Query 009074
Match_columns 544
No_of_seqs 42 out of 44
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 18:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 96.8 0.0023 7.7E-08 71.2 8.3 40 34-73 857-896 (1184)
2 1c1g_A Tropomyosin; contractIl 96.4 0.37 1.3E-05 40.9 32.4 14 300-313 268-281 (284)
3 1i84_S Smooth muscle myosin he 95.9 0.0074 2.5E-07 67.1 5.9 46 270-315 1117-1162(1184)
4 1c1g_A Tropomyosin; contractIl 95.5 0.99 3.4E-05 38.3 28.6 23 103-125 77-99 (284)
5 3na7_A HP0958; flagellar bioge 94.7 2 6.7E-05 40.3 17.3 102 104-206 34-135 (256)
6 3vkg_A Dynein heavy chain, cyt 94.7 3 0.0001 52.2 23.0 89 105-203 2010-2098(3245)
7 2dfs_A Myosin-5A; myosin-V, in 92.7 2.8 9.5E-05 47.2 16.7 55 115-183 959-1013(1080)
8 3vkg_A Dynein heavy chain, cyt 91.8 18 0.0006 45.6 23.3 81 125-206 1901-1986(3245)
9 2dfs_A Myosin-5A; myosin-V, in 89.0 6.1 0.00021 44.6 14.9 81 156-236 923-1007(1080)
10 2v71_A Nuclear distribution pr 88.5 17 0.00056 34.3 17.8 88 163-285 83-170 (189)
11 3oja_B Anopheles plasmodium-re 85.6 31 0.001 34.5 16.3 44 155-205 538-581 (597)
12 3na7_A HP0958; flagellar bioge 84.0 28 0.00095 32.5 20.1 31 42-72 12-42 (256)
13 1f5n_A Interferon-induced guan 82.6 16 0.00056 38.6 13.6 127 100-235 433-582 (592)
14 3oja_B Anopheles plasmodium-re 78.4 22 0.00075 35.5 12.2 30 107-136 454-483 (597)
15 3mq9_A Bone marrow stromal ant 77.9 44 0.0015 32.7 14.0 96 134-242 370-465 (471)
16 1hjb_A Ccaat/enhancer binding 76.1 15 0.00053 30.7 8.8 64 123-186 12-75 (87)
17 2oqq_A Transcription factor HY 75.4 3.3 0.00011 31.3 4.1 29 155-183 11-39 (42)
18 1gu4_A CAAT/enhancer binding p 75.2 14 0.00047 30.4 8.1 64 123-186 12-75 (78)
19 1t2k_D Cyclic-AMP-dependent tr 72.9 18 0.00063 27.5 7.9 53 129-181 4-56 (61)
20 1dh3_A Transcription factor CR 71.6 9.2 0.00031 29.2 5.9 49 128-176 3-51 (55)
21 2wt7_A Proto-oncogene protein 70.5 29 0.00099 26.8 8.5 55 128-182 4-58 (63)
22 2b9c_A Striated-muscle alpha t 69.7 40 0.0014 30.1 10.5 87 193-293 18-104 (147)
23 2efr_A General control protein 68.8 70 0.0024 29.2 16.5 120 104-232 2-152 (155)
24 2v71_A Nuclear distribution pr 67.2 85 0.0029 29.5 13.7 54 104-157 97-150 (189)
25 3oja_A Leucine-rich immune mol 66.9 48 0.0016 32.6 11.4 47 107-153 433-479 (487)
26 1ci6_A Transcription factor AT 63.7 28 0.00095 27.0 7.3 53 132-184 8-60 (63)
27 3tnu_B Keratin, type II cytosk 63.6 41 0.0014 28.7 9.0 25 214-238 76-100 (129)
28 1go4_E MAD1 (mitotic arrest de 63.1 12 0.0004 32.4 5.5 60 221-289 27-95 (100)
29 3mq7_A Bone marrow stromal ant 63.1 71 0.0024 28.6 10.6 73 156-241 20-92 (121)
30 3mq7_A Bone marrow stromal ant 62.6 87 0.003 28.1 11.1 75 134-208 29-111 (121)
31 3tnu_A Keratin, type I cytoske 61.6 35 0.0012 29.3 8.3 73 190-277 53-131 (131)
32 3mxz_A Tubulin-specific chaper 60.9 61 0.0021 28.2 9.7 74 125-203 14-88 (116)
33 1jnm_A Proto-oncogene C-JUN; B 60.3 27 0.00093 26.7 6.6 52 130-181 5-56 (62)
34 3o0z_A RHO-associated protein 56.7 1.3E+02 0.0043 28.1 15.9 115 162-310 7-131 (168)
35 3ol1_A Vimentin; structural ge 53.0 1.1E+02 0.0037 26.2 12.6 98 93-191 11-113 (119)
36 1gk4_A Vimentin; intermediate 52.5 36 0.0012 27.5 6.4 75 190-279 2-82 (84)
37 2ocy_A RAB guanine nucleotide 51.9 1.4E+02 0.0049 27.3 15.0 125 104-242 15-144 (154)
38 2v4h_A NF-kappa-B essential mo 51.1 49 0.0017 29.2 7.4 65 42-122 25-89 (110)
39 3ghg_A Fibrinogen alpha chain; 51.0 2.2E+02 0.0074 31.0 13.6 107 107-222 62-182 (562)
40 1deq_A Fibrinogen (alpha chain 50.6 1.8E+02 0.0063 30.2 12.6 41 165-207 117-159 (390)
41 2k48_A Nucleoprotein; viral pr 49.5 81 0.0028 27.8 8.5 60 116-175 35-103 (107)
42 2eqb_B RAB guanine nucleotide 47.4 1.4E+02 0.0047 25.8 11.5 59 169-237 34-93 (97)
43 3oja_A Leucine-rich immune mol 47.4 2.1E+02 0.0073 28.0 12.7 74 76-154 323-398 (487)
44 3lhp_S 4E10_D0_1ISEA_004_N (T9 46.6 69 0.0023 28.7 7.7 91 30-141 18-122 (123)
45 1x79_B RAB GTPase binding effe 45.9 1.5E+02 0.0053 25.9 10.3 86 154-239 6-96 (112)
46 3lf9_A 4E10_D0_1IS1A_001_C (T1 44.9 31 0.001 30.9 5.2 45 88-141 67-112 (121)
47 1m1j_B Fibrinogen beta chain; 44.8 45 0.0015 35.0 7.3 25 33-57 99-123 (464)
48 3swk_A Vimentin; cytoskeleton, 44.4 99 0.0034 25.3 7.9 29 156-184 58-86 (86)
49 2ic6_A Nucleocapsid protein; h 44.3 1.1E+02 0.0039 25.5 8.2 28 149-176 47-74 (78)
50 2fxo_A Myosin heavy chain, car 43.4 1.6E+02 0.0053 25.3 15.1 44 38-82 17-60 (129)
51 1fxk_C Protein (prefoldin); ar 43.2 94 0.0032 26.0 7.8 85 156-244 3-119 (133)
52 1gd2_E Transcription factor PA 43.0 32 0.0011 27.8 4.6 44 134-180 26-69 (70)
53 2p22_A Suppressor protein STP2 41.5 2.2E+02 0.0075 26.4 12.8 68 114-181 10-90 (174)
54 3a7p_A Autophagy protein 16; c 40.6 2.1E+02 0.0072 26.3 10.2 37 159-195 108-145 (152)
55 1deq_A Fibrinogen (alpha chain 40.5 3.4E+02 0.012 28.3 22.3 94 105-198 63-157 (390)
56 2ic9_A Nucleocapsid protein; h 39.0 1.5E+02 0.0053 25.6 8.5 30 149-178 47-76 (96)
57 1x8y_A Lamin A/C; structural p 38.5 29 0.001 28.3 3.9 17 261-277 61-82 (86)
58 4fi5_A Nucleoprotein; structur 37.8 98 0.0033 27.5 7.2 28 148-175 63-90 (113)
59 1vcs_A Vesicle transport throu 37.6 58 0.002 27.1 5.6 58 37-126 34-91 (102)
60 3mov_A Lamin-B1; LMNB1, B-type 37.5 1.6E+02 0.0055 24.6 8.3 68 156-237 14-82 (95)
61 1wt6_A Myotonin-protein kinase 37.5 1.6E+02 0.0055 24.8 8.2 21 188-212 58-78 (81)
62 1ik9_A DNA repair protein XRCC 37.4 2.7E+02 0.0091 26.2 10.8 59 157-222 135-198 (213)
63 2qyw_A Vesicle transport throu 36.5 67 0.0023 26.8 5.8 56 37-124 45-100 (102)
64 4gkw_A Spindle assembly abnorm 34.9 39 0.0013 31.2 4.4 45 149-193 6-50 (167)
65 4emc_A Monopolin complex subun 33.3 1.7E+02 0.0058 27.8 8.6 46 146-205 11-57 (190)
66 3u1c_A Tropomyosin alpha-1 cha 32.4 2.2E+02 0.0074 23.7 12.2 33 195-227 68-100 (101)
67 1l8d_A DNA double-strand break 32.1 1.9E+02 0.0067 23.3 7.8 21 215-235 66-86 (112)
68 3nmd_A CGMP dependent protein 31.3 45 0.0015 27.5 3.8 47 23-70 16-62 (72)
69 3hnw_A Uncharacterized protein 30.4 2.8E+02 0.0097 24.4 11.6 79 145-240 59-137 (138)
70 2v4h_A NF-kappa-B essential mo 30.3 2.9E+02 0.0098 24.4 10.4 55 187-242 43-105 (110)
71 1l8d_A DNA double-strand break 30.1 2.2E+02 0.0075 23.0 7.8 33 107-139 8-40 (112)
72 2lw1_A ABC transporter ATP-bin 29.9 55 0.0019 26.4 4.1 46 189-238 29-74 (89)
73 1fxk_A Prefoldin; archaeal pro 29.9 2.1E+02 0.0071 22.7 10.3 39 211-249 6-44 (107)
74 4dzn_A Coiled-coil peptide CC- 29.7 36 0.0012 24.4 2.6 20 487-506 5-24 (33)
75 1qsd_A Protein (beta-tubulin b 29.3 2.7E+02 0.0091 23.7 9.3 38 161-198 43-80 (106)
76 3iyk_A VP5; icosahedral virus; 27.1 6.2E+02 0.021 27.3 16.0 174 11-215 64-246 (526)
77 1uii_A Geminin; human, DNA rep 26.6 1.2E+02 0.0039 25.7 5.6 38 148-185 33-70 (83)
78 1x8y_A Lamin A/C; structural p 26.5 2.6E+02 0.0088 22.7 7.7 45 189-237 28-73 (86)
79 2fup_A Hypothetical protein PA 26.4 2.8E+02 0.0096 23.1 9.3 41 103-143 8-56 (157)
80 2dgc_A Protein (GCN4); basic d 26.4 1.5E+02 0.0051 23.1 5.9 43 133-175 16-58 (63)
81 3a7p_A Autophagy protein 16; c 25.9 1.6E+02 0.0055 27.1 6.9 39 34-72 68-106 (152)
82 3onj_A T-snare VTI1; helix, HA 25.7 2.8E+02 0.0095 22.8 9.6 59 37-127 30-91 (97)
83 1nkp_B MAX protein, MYC proto- 25.6 1.2E+02 0.004 24.0 5.3 33 145-180 41-73 (83)
84 1fxk_C Protein (prefoldin); ar 25.5 1.2E+02 0.0042 25.3 5.7 40 462-501 84-126 (133)
85 2pms_C Pneumococcal surface pr 25.3 1.5E+02 0.0053 26.5 6.4 74 99-201 41-122 (125)
86 3he4_A Synzip6; heterodimeric 24.1 73 0.0025 24.9 3.6 33 98-130 20-52 (56)
87 1h7c_A Tubulin-specific chaper 23.2 3.5E+02 0.012 23.0 8.9 68 126-198 14-82 (108)
88 3ghg_A Fibrinogen alpha chain; 23.1 4.5E+02 0.015 28.6 10.5 40 193-235 114-153 (562)
89 1hlo_A Protein (transcription 23.1 76 0.0026 25.0 3.7 30 145-177 51-80 (80)
90 2w6b_A RHO guanine nucleotide 22.6 2.2E+02 0.0075 22.7 6.1 42 146-187 9-50 (56)
91 1ytz_T Troponin T; muscle, THI 22.3 1.7E+02 0.0057 25.3 5.9 46 156-201 44-89 (107)
92 1gd2_E Transcription factor PA 22.2 2.2E+02 0.0075 22.9 6.2 39 141-181 18-56 (70)
93 1dip_A Delta-sleep-inducing pe 21.7 75 0.0026 26.7 3.5 29 155-183 16-44 (78)
94 4emc_A Monopolin complex subun 21.7 2.1E+02 0.0072 27.2 7.0 53 97-149 1-53 (190)
95 3tnu_B Keratin, type II cytosk 21.6 3.7E+02 0.013 22.8 12.1 73 105-177 32-105 (129)
96 3tnu_A Keratin, type I cytoske 21.5 3.8E+02 0.013 22.8 10.9 71 107-177 36-107 (131)
97 1p9i_A Cortexillin I/GCN4 hybr 21.1 66 0.0023 22.8 2.6 24 97-120 1-24 (31)
98 2yy0_A C-MYC-binding protein; 21.1 1.1E+02 0.0036 23.5 4.0 25 156-180 21-45 (53)
99 2oqq_A Transcription factor HY 20.8 88 0.003 23.7 3.4 22 215-236 12-33 (42)
100 2qfa_B Borealin; three-helical 20.8 1.6E+02 0.0054 23.5 5.0 47 152-200 7-53 (62)
101 4etp_A Kinesin-like protein KA 20.5 1.8E+02 0.0063 29.2 6.7 18 184-201 40-57 (403)
102 4gfq_A Ribosome-recycling fact 20.3 92 0.0032 29.7 4.3 68 65-141 127-208 (209)
103 1t2k_D Cyclic-AMP-dependent tr 20.2 2.6E+02 0.009 21.0 6.1 18 189-206 43-60 (61)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.80 E-value=0.0023 Score=71.17 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=29.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 009074 34 PVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRA 73 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~ 73 (544)
+-+.++.+++..+++++...+..+....-++..+..++..
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~ 896 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL 896 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888777666666666665553
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.41 E-value=0.37 Score=40.94 Aligned_cols=14 Identities=7% Similarity=0.007 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q 009074 300 EKYHLRLKVLEESL 313 (544)
Q Consensus 300 eK~~lRLk~LEe~l 313 (544)
.++..++..+.+.|
T Consensus 268 ~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 268 KAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34445555554444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.90 E-value=0.0074 Score=67.14 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 009074 270 ERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRG 315 (544)
Q Consensus 270 ErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~ 315 (544)
+..-++.++..|.+.|...+.....-..-++.++..+..|.+.|..
T Consensus 1117 ~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555554433211111111123444555555555444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.50 E-value=0.99 Score=38.31 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=9.9
Q ss_pred hhhccHHHHHHHHHHHHHhhhch
Q 009074 103 ILAPLEAELKLARQEIAKLQDDN 125 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddn 125 (544)
-+..++.++......+..+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ 99 (284)
T 1c1g_A 77 KATDAEADVASLNRRIQLFEEEL 99 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.72 E-value=2 Score=40.25 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=51.7
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
|.-|+.++...+..+..++.....+++-.+..|..+.++...+...-.+-.-|. =.-....|.++|+....+...|++-
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANRE 112 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555544443333322221 0112345666676666666666655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 009074 184 HRQKVAEVEKLTQTVRELEEAVL 206 (544)
Q Consensus 184 hRQKvaEVEKLtqTv~ELEEAvL 206 (544)
-..-..+++.+...+.++++.+-
T Consensus 113 ile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 113 IENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.67 E-value=3 Score=52.16 Aligned_cols=89 Identities=8% Similarity=0.101 Sum_probs=45.4
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 009074 105 APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMH 184 (544)
Q Consensus 105 ApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~h 184 (544)
+|+..++..+..+..+.++.-.+++..++.-|..|...+...+.+.. +-+.|..+++.|+.--.--+++-
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~----------ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR----------ETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988888888777777666665555555555555444443333322 23445555555553211111111
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 009074 185 RQKVAEVEKLTQTVRELEE 203 (544)
Q Consensus 185 RQKvaEVEKLtqTv~ELEE 203 (544)
-.=-.|-++-++++.+|++
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHH
Confidence 1112344555666666654
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.67 E-value=2.8 Score=47.23 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 115 RQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 115 r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
-+|+.+|+.|+..|+.+.+.++.+ + ..|.+|+..+.+|.++++....|.+-|+.-
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~----~----------~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNA----T----------NRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777654433311 1 335666777777777777666666666443
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.81 E-value=18 Score=45.62 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=58.6
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHH----hhhhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhhHHHHHHHHHHHHH
Q 009074 125 NKALDRLTKSKEAALLEAERTVQVALAK----ASMVDDLQNKNQELMKQIEICQEENK-ILDKMHRQKVAEVEKLTQTVR 199 (544)
Q Consensus 125 nkaLerltksKEaALleAeR~v~~Alak----A~~V~dlQN~N~EL~kQiEIcqEEnk-iLdk~hRQKvaEVEKLtqTv~ 199 (544)
.+..-.|+..|-..+.+....++..|.| +..|++||.+..++..+++.-++|.. +|+++...+ .|+++-...+.
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~-~~ae~~k~~v~ 1979 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ-QAAEIKQKDAR 1979 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3455677888888888888888888887 67889999999999999988777765 777776543 24444444444
Q ss_pred HHHHHHH
Q 009074 200 ELEEAVL 206 (544)
Q Consensus 200 ELEEAvL 206 (544)
+.|+.+.
T Consensus 1980 ~~~~~~~ 1986 (3245)
T 3vkg_A 1980 ELQVQLD 1986 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.96 E-value=6.1 Score=44.55 Aligned_cols=81 Identities=25% Similarity=0.219 Sum_probs=27.2
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhh
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMH----RQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKT 231 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~h----RQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrt 231 (544)
..+|+|+..||..+++...++|+.|..-. .....|+.+|...+.+||..-.---.+-|-|...+.++.++.++...
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888888776443 34567888887777777764222222223344444444444444444
Q ss_pred HHHHH
Q 009074 232 LDREL 236 (544)
Q Consensus 232 LerEL 236 (544)
+..|.
T Consensus 1003 ~~ke~ 1007 (1080)
T 2dfs_A 1003 TQTEK 1007 (1080)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.50 E-value=17 Score=34.29 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhh
Q 009074 163 NQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVT 242 (544)
Q Consensus 163 N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~ 242 (544)
..+..++|...|.|.--|-..+++=-.-|-+|-|.-..||-+. -++...+-|++.+....-|....|+-||.
T Consensus 83 ~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~---R~~~~SleD~e~kln~aiEr~alLE~El~----- 154 (189)
T 2v71_A 83 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK---RATIMSLEDFEQRLNQAIERNAFLESELD----- 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3334444555666655555555544444455555555555443 34555688888888888888888888883
Q ss_pred hhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHH
Q 009074 243 ANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRL 285 (544)
Q Consensus 243 AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKL 285 (544)
|+--|+.++|||||.+
T Consensus 155 ---------------------------EKe~l~~~~QRLkdE~ 170 (189)
T 2v71_A 155 ---------------------------EKESLLVSVQRLKDEA 170 (189)
T ss_dssp ---------------------------HHHHHHCCC-------
T ss_pred ---------------------------HHHHHHHHHHHHHHHH
Confidence 4555788888888875
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.55 E-value=31 Score=34.45 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=25.4
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV 205 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAv 205 (544)
..+.+++++.++.++++..++...-|. -|+..+.+.+.+|++.+
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~-------~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELR-------QETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTT
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 345666777777777665554433222 34566666666666654
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.97 E-value=28 Score=32.51 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 009074 42 ELSKVEEKLKLAENLIETKNLEIKKINDEKR 72 (544)
Q Consensus 42 El~K~dEKLk~tE~lle~kNLEiKklndEKK 72 (544)
+|..+|-++..++..+.+...+|..+.++..
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~ 42 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKE 42 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666666666666666666666666554
No 13
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=82.65 E-value=16 Score=38.64 Aligned_cols=127 Identities=26% Similarity=0.314 Sum_probs=72.2
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhH-----------------HHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSK-----------------EAALLEAERTVQVALAKASMVDDLQNK 162 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerltksK-----------------EaALleAeR~v~~AlakA~~V~dlQN~ 162 (544)
+...+.-++.=...|.++..+=-.-..+|...++++ |.++.+....=+.|...+.+.++.|.+
T Consensus 433 ~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~ 512 (592)
T 1f5n_A 433 YRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRK 512 (592)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554322222334555555544 444444444445566667778899999
Q ss_pred hHHHHHHHHHHHHHhHH--HHHHhhh---HHHHHHH-HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 009074 163 NQELMKQIEICQEENKI--LDKMHRQ---KVAEVEK-LTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 163 N~EL~kQiEIcqEEnki--Ldk~hRQ---KvaEVEK-LtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerE 235 (544)
++..|.+-+...+|+-. -+||.+- -..|.++ |.+.+.|-+ .+|.-| |+.+...|+.|...|.++
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~-~~~~~g--------~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQE-QLLKEG--------FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHT--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHHHHHHHHHHHHHh
Confidence 99999888877777642 2344332 2333332 122222222 222223 899999999999998887
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.40 E-value=22 Score=35.49 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHH
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKE 136 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKE 136 (544)
|++++...+.++..|++.....++.+...+
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~ 483 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLH 483 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554444444443333
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.94 E-value=44 Score=32.69 Aligned_cols=96 Identities=23% Similarity=0.249 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 009074 134 SKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAAN 213 (544)
Q Consensus 134 sKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaN 213 (544)
+-+.||.++...++.++.+.....+..|-+..|.+||..+|.----+++ --.-..+||--|-+.+-+--+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--- 439 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA-------QAATANHTVMALMASLDAEKA--- 439 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH-------HhhhcchhHHHHHHHHHHHHH---
Confidence 5588999999999999999999999999999999999988753222111 111223445445444443211
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHhhhhhh
Q 009074 214 AVRDYQRKVQEMNEERKTLDRELARAKVT 242 (544)
Q Consensus 214 Avrdyqrq~~elneEkrtLerELARaKv~ 242 (544)
.-+.+++||..|..+|+.+|.-+..-
T Consensus 440 ---~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 440 ---QGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11247888888888888888655443
No 16
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.11 E-value=15 Score=30.69 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=53.0
Q ss_pred hchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh
Q 009074 123 DDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ 186 (544)
Q Consensus 123 ddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQ 186 (544)
+|..-.++--|+.+|+=-+=+..=+-..+...-|+.|+..|..|..+|+....|...|-.+..|
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888877777777778888889999999999999999999888888777655
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.41 E-value=3.3 Score=31.35 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=25.4
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
-|.||+++|.||...|-+.|.||-.|..+
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36899999999999999999999877544
No 18
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.16 E-value=14 Score=30.41 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=53.7
Q ss_pred hchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh
Q 009074 123 DDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ 186 (544)
Q Consensus 123 ddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQ 186 (544)
+|..-.++--|+.+|+=-+=+..=+-..+...-|++|...|..|..+|+....|...|-.+..|
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888899998888887778888888899999999999999999999999888766543
No 19
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.93 E-value=18 Score=27.49 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHH
Q 009074 129 DRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILD 181 (544)
Q Consensus 129 erltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLd 181 (544)
.++.+++.||.-.=+|.-+-...--.-|++|...|.+|..+|...++|+.-|.
T Consensus 4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888887776666666666666677888888888877777777766554
No 20
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=71.58 E-value=9.2 Score=29.25 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=34.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHH
Q 009074 128 LDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEE 176 (544)
Q Consensus 128 LerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEE 176 (544)
.-|++++.|+|-.+=.|.-.-.-.--.-|.+|+..|..|..|++..+++
T Consensus 3 ~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888887777765544444455777777777777777776654
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.46 E-value=29 Score=26.75 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=41.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 128 LDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 128 LerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
.-++.++++||--.=.|..+-...--.-|+.|+..|.+|..+|...++|..-|.-
T Consensus 4 ~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 4 RIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888777777777777777888888888888888777776655543
No 22
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=69.74 E-value=40 Score=30.13 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhh
Q 009074 193 KLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERR 272 (544)
Q Consensus 193 KLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR 272 (544)
+|+.+...|++|=-++--.-.+.+.+.++-..-.+....|+.+|.-|+-.|. -.++| .-.|-++| -
T Consensus 18 rl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~ae------eadrK-----yeE~~RKl---~ 83 (147)
T 2b9c_A 18 RLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE------DADRK-----YEEVARKL---V 83 (147)
T ss_dssp TTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-----HHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH------HHHHh-----HHHHHHHH---H
Confidence 4666777777776666555566777887777777888889999988887776 23444 34666666 3
Q ss_pred hhHHHHHHHHHHHHHhHHhhh
Q 009074 273 FLQGEMQQLRDRLAITERTAK 293 (544)
Q Consensus 273 ~LQGEmqrLrdKLAiaERtAk 293 (544)
++.|+..+.-+++..+|...+
T Consensus 84 ~~E~dLeraeeRae~aE~k~~ 104 (147)
T 2b9c_A 84 IIESDLERAEERAELSEGKCA 104 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577888887777777766554
No 23
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.80 E-value=70 Score=29.18 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHH-----------hhhhHHhhhhhHHHHHHHHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAK-----------ASMVDDLQNKNQELMKQIEI 172 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Alak-----------A~~V~dlQN~N~EL~kQiEI 172 (544)
|.-||.+||-+ ..+..+-.+-..+ =|..|..|+-.+..|..+ .-.+..|...-..-..+.+.
T Consensus 2 ~~~lE~qlkea------ae~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~ 74 (155)
T 2efr_A 2 MKQLEDKVEEL------LSKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDK 74 (155)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Q ss_pred HHHHhHHHHHHhhhHHHH---------HHHHHHHHHHHHHHHHhc-----------hhhhhhhHHHHHHHHHHHHHhhhH
Q 009074 173 CQEENKILDKMHRQKVAE---------VEKLTQTVRELEEAVLAG-----------GAAANAVRDYQRKVQEMNEERKTL 232 (544)
Q Consensus 173 cqEEnkiLdk~hRQKvaE---------VEKLtqTv~ELEEAvLag-----------gaaaNAvrdyqrq~~elneEkrtL 232 (544)
|.+.-++|.. +.|-+| |.||..+|..||+-+.+. -.+.|-+..|+.++-+|+.|...|
T Consensus 75 yEeqIk~L~~--kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 75 YEEEIKVLSD--KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.19 E-value=85 Score=29.54 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=39.7
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVD 157 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~ 157 (544)
|+-|......++..|-.|--.|--|+|-.+...+.|...+-.+-.|+++-.+++
T Consensus 97 l~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE 150 (189)
T 2v71_A 97 LSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666667777777888888888888888888888888877774
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.93 E-value=48 Score=32.58 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA 153 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA 153 (544)
.+.+.+..+.+|.+|.+.+.-++.++..=+.++.+|..+++.|..+-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 44556677778888888888888888888888888888888776543
No 26
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.72 E-value=28 Score=27.05 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 009074 132 TKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMH 184 (544)
Q Consensus 132 tksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~h 184 (544)
-+++.||---=++.-+-.-.--.-|++|...|.+|..+|+..+.|+..|-.+-
T Consensus 8 ~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 8 EQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444455555555556789999999999999999999999886543
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.55 E-value=41 Score=28.73 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHhh
Q 009074 214 AVRDYQRKVQEMNEERKTLDRELAR 238 (544)
Q Consensus 214 Avrdyqrq~~elneEkrtLerELAR 238 (544)
++.+|+.++..|..+...+..+++|
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566666666555555544444433
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=63.14 E-value=12 Score=32.37 Aligned_cols=60 Identities=25% Similarity=0.452 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchh---------hHHHHhhhhHHHHHHHHHHHHHhH
Q 009074 221 KVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVK---------QWLEERRFLQGEMQQLRDRLAITE 289 (544)
Q Consensus 221 q~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVK---------qWLEErR~LQGEmqrLrdKLAiaE 289 (544)
....|.+++..||-+|.+. ...+++-..+-||+|.. +.-++---||.|+.+||.++...|
T Consensus 27 E~~rLr~~~~~LE~~Le~~---------~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 27 ERSRLEEEKRMLEAQLERR---------ALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------SCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHH---------hhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666666332 13356656677888653 344555567777777777765544
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.09 E-value=71 Score=28.64 Aligned_cols=73 Identities=26% Similarity=0.282 Sum_probs=54.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerE 235 (544)
..+.+|-+.=|..|+-..|+ ..|+..++.---.+||--|-.++-.--+.. |.++++|..|..+|..+
T Consensus 20 q~ECrN~T~lLq~qLTqAQe-------~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~------q~~vqeLqgEI~~Lnq~ 86 (121)
T 3mq7_A 20 VMEARNVTHLLQQELTEAQK-------GFQDVEAQAATANHTVMALMASLDAEKAQG------QKKVEELEGEITTLNHK 86 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 45677888888888877773 567777777788888888877776532222 77899999999999988
Q ss_pred Hhhhhh
Q 009074 236 LARAKV 241 (544)
Q Consensus 236 LARaKv 241 (544)
|--+.+
T Consensus 87 Lq~a~a 92 (121)
T 3mq7_A 87 LQDASA 92 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865544
No 30
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.65 E-value=87 Score=28.10 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh----HHhhhhhHHH----HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 009074 134 SKEAALLEAERTVQVALAKASMV----DDLQNKNQEL----MKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV 205 (544)
Q Consensus 134 sKEaALleAeR~v~~AlakA~~V----~dlQN~N~EL----~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAv 205 (544)
.=+..|-.|...++.+.+-|.-| .+|.-...+. .+|++..+.|.+.|....+-.-+|||.|......|---|
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 33445666666677777666543 4444433333 345999999999999999999999999998887775554
Q ss_pred Hhc
Q 009074 206 LAG 208 (544)
Q Consensus 206 Lag 208 (544)
-..
T Consensus 109 ~~~ 111 (121)
T 3mq7_A 109 ADK 111 (121)
T ss_dssp C--
T ss_pred hhc
Confidence 433
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.64 E-value=35 Score=29.32 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhch-hhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHH
Q 009074 190 EVEKLTQTVRELEEAVLAGG-AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWL 268 (544)
Q Consensus 190 EVEKLtqTv~ELEEAvLagg-aaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWL 268 (544)
|++.+.....-||..|--.. --..++.+|+.++..|..+...+-.+++|- ..|.. .+|.||..|
T Consensus 53 el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q-----------l~EYq----~Ll~vKl~L 117 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ-----------NQEYK----ILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HHHHHHHHH
Confidence 33333333344444443321 123346677777766655555555555432 23443 347888777
Q ss_pred HH-----hhhhHHH
Q 009074 269 EE-----RRFLQGE 277 (544)
Q Consensus 269 EE-----rR~LQGE 277 (544)
+- |++|-||
T Consensus 118 d~EIatYRkLLEGE 131 (131)
T 3tnu_A 118 EQEIATYRRLLEGE 131 (131)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhHCcC
Confidence 52 5666554
No 32
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=60.86 E-value=61 Score=28.19 Aligned_cols=74 Identities=26% Similarity=0.329 Sum_probs=49.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 009074 125 NKALDRLTKSKEAALLEAERTVQVALAKA-SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEE 203 (544)
Q Consensus 125 nkaLerltksKEaALleAeR~v~~AlakA-~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEE 203 (544)
-.++.||.|-+..---|+... .++- .|.++ .+..++|++|.++++|=.+.+-.+++-=..-+.+|.+.+.+.++
T Consensus 14 tg~vkRL~KE~~~Y~kE~~~q----~~kiekmk~e-~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 88 (116)
T 3mxz_A 14 TSTCKRIVKELHSYEKEVERE----AAKTADMKDK-GADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEE 88 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356777777665544444311 1111 12222 46679999999999999999999998777777777777766543
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.28 E-value=27 Score=26.69 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=40.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHH
Q 009074 130 RLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILD 181 (544)
Q Consensus 130 rltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLd 181 (544)
+..++++||--.=+|..+-...--.-|++|...|.+|..+|...++|+.-|.
T Consensus 5 rr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 5 KRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776667777788999999999999999888876653
No 34
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=56.71 E-value=1.3e+02 Score=28.08 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 009074 162 KNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKV 241 (544)
Q Consensus 162 ~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv 241 (544)
++..|-||++.+++-.|.-...+=.----.--++.++..+|.. +|++|-++.-|...+-.|++|++..-.
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~----------~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESL----------NRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhccccCCCCccchhhHHHHh----------hhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Q 009074 242 TANRVATVVANEWKDANDKVMPVKQWLEER----------RFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLE 310 (544)
Q Consensus 242 ~AnRVA~vVAnEWKDendkVmPVKqWLEEr----------R~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LE 310 (544)
+|-.|| +=|||-|+.|...|...--.-..-.-=+-+++-|+-.||
T Consensus 77 ------------------------~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 77 ------------------------ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.03 E-value=1.1e+02 Score=26.17 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=50.3
Q ss_pred cCCCCChhHHhhhccHHHHHHHHHHHHHhhhchH----HHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhHHhhhhhHHHH
Q 009074 93 KDDDMPPIEAILAPLEAELKLARQEIAKLQDDNK----ALDRLTKSKEAALLEAERTVQVALAKA-SMVDDLQNKNQELM 167 (544)
Q Consensus 93 KdddmppieaiiApLeaelk~~r~Ei~kLqddnk----aLerltksKEaALleAeR~v~~AlakA-~~V~dlQN~N~EL~ 167 (544)
-..+-|.+++.|..|...|...-.+.+.|+-+.. +++.+-..=|..+ .....++..+.-. -.||+.-=...+|.
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-~~r~~~E~di~~lrK~lD~~~l~r~dLE 89 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-LQREEAENTLQSFRQDVDNASLARLDLE 89 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 3445566666677666666666555555443222 2222211111111 0011122221111 12344444556788
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHH
Q 009074 168 KQIEICQEENKILDKMHRQKVAEV 191 (544)
Q Consensus 168 kQiEIcqEEnkiLdk~hRQKvaEV 191 (544)
.||+..++|--+|.++|-+-|.|+
T Consensus 90 ~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 90 RKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997755543
No 36
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.45 E-value=36 Score=27.49 Aligned_cols=75 Identities=29% Similarity=0.448 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhchh-hhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHH
Q 009074 190 EVEKLTQTVRELEEAVLAGGA-AANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWL 268 (544)
Q Consensus 190 EVEKLtqTv~ELEEAvLagga-aaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWL 268 (544)
|++-|..+..-||..|--.-. -...+.+|+.++..+..+...+..++++- ..|+.+ +|-||.-|
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q-----------~~EYq~----LlnvK~~L 66 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH-----------LREYQD----LLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH----HHHHHHhh
Confidence 344444444445444433211 12235555555555554444444444322 123332 36666665
Q ss_pred HH-----hhhhHHHHH
Q 009074 269 EE-----RRFLQGEMQ 279 (544)
Q Consensus 269 EE-----rR~LQGEmq 279 (544)
+- |++|.||=.
T Consensus 67 d~EIatYRkLLEGEe~ 82 (84)
T 1gk4_A 67 DIEIATYRKLLEGEES 82 (84)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHcCCcc
Confidence 53 566666543
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.90 E-value=1.4e+02 Score=27.27 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=65.1
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
.+-||-+|--.|+++...+.-++.|+.+-.. +..+. ++ ..++.-....|+.++...+.-..-.++-
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~----~~~l~--~~--------~~~~~~e~~~L~~~l~~E~~~R~~aE~~ 80 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKED----YNTLK--RE--------LSDRDDEVKRLREDIAKENELRTKAEEE 80 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HHHHH--TH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HH--------HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999888888888865322 11111 11 1223333444544444444444444555
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHhc-hhhhhh---hHHHHHHHHHHHHHhhhHHHHHhhhhhh
Q 009074 184 HRQKVAEVEKLTQTVRE-LEEAVLAG-GAAANA---VRDYQRKVQEMNEERKTLDRELARAKVT 242 (544)
Q Consensus 184 hRQKvaEVEKLtqTv~E-LEEAvLag-gaaaNA---vrdyqrq~~elneEkrtLerELARaKv~ 242 (544)
..+=-.|||-||..+=+ -=+-|-.. -..+++ +..++.+..+-..-...|..+|+.-|.+
T Consensus 81 ~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556678888776532 11222111 112222 3333444555555555566666555544
No 38
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=51.07 E-value=49 Score=29.21 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHh
Q 009074 42 ELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKL 121 (544)
Q Consensus 42 El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kL 121 (544)
++.-|..+|...|..|..|..+|.++..|-- .+-++. +.||-|.+.+-+..+|...=|..-.++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~----q~~~~l------------E~I~vLkaQv~IY~~DF~aERadREkl 88 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAE----QHKIVM------------ETVPVLKAQADIYKADFQAERHAREKL 88 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------HHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 6777888999999999999999999876432 222222 335555555555555555444433333
Q ss_pred h
Q 009074 122 Q 122 (544)
Q Consensus 122 q 122 (544)
+
T Consensus 89 ~ 89 (110)
T 2v4h_A 89 V 89 (110)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.97 E-value=2.2e+02 Score=30.95 Aligned_cols=107 Identities=18% Similarity=0.279 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhh-HHHHHHHHHHHHHhHHHHHHhh
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKN-QELMKQIEICQEENKILDKMHR 185 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N-~EL~kQiEIcqEEnkiLdk~hR 185 (544)
|-.-|...|+++..+|...+-.+.+++.+--.|-.-..... =.+..-|+. .||.++|+..+++- -..+.+
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-------dNdNtynE~S~ELRRrIqyLKekV--dnQlsn 132 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-------NRDNTYNRVSEDLRSRIEVLKRKV--IEKVQH 132 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-------HHHHHHHHTTHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-------ccchhHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 33444555666666666666667666655444432221111 011111122 26777777666542 222233
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHhc-----hhhh--hh----hHHHHHHH
Q 009074 186 QKVAE--VEKLTQTVRELEEAVLAG-----GAAA--NA----VRDYQRKV 222 (544)
Q Consensus 186 QKvaE--VEKLtqTv~ELEEAvLag-----gaaa--NA----vrdyqrq~ 222 (544)
.++++ |+.+-..|..||-+|.+- |.-+ .+ +.+|..+-
T Consensus 133 IrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~Q 182 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQ 182 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHH
Confidence 33333 667777888888888763 3322 22 78886543
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.63 E-value=1.8e+02 Score=30.24 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHh
Q 009074 165 ELMKQIEICQEENKILDKMHRQKVAE--VEKLTQTVRELEEAVLA 207 (544)
Q Consensus 165 EL~kQiEIcqEEnkiLdk~hRQKvaE--VEKLtqTv~ELEEAvLa 207 (544)
||.++|++.|+ +|-+.+.+.++++ |+.+.-.|..||-+|-.
T Consensus 117 eLe~~i~~lk~--~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 117 DLRSRIEILRR--KVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555543 3334444444443 45666666677777743
No 41
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=49.55 E-value=81 Score=27.79 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHhhhchHHHHHHhhhHHHHHHHHHHHH---------HHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 009074 116 QEIAKLQDDNKALDRLTKSKEAALLEAERTV---------QVALAKASMVDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 116 ~Ei~kLqddnkaLerltksKEaALleAeR~v---------~~AlakA~~V~dlQN~N~EL~kQiEIcqE 175 (544)
..|..||+...+.|..+-.---.|-.|++.+ ++--.|-+.|.-||++.-||++||-....
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666555444444444444443 23345667788899999999999876554
No 42
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.39 E-value=1.4e+02 Score=25.76 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHHHhhhHHHHHh
Q 009074 169 QIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA-VRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 169 QiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNA-vrdyqrq~~elneEkrtLerELA 237 (544)
++...+.-+...+.-..+=-.|||-||+.+= +|| |- |.+-++..+.+......|..+|.
T Consensus 34 ~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF--eEA--------N~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 34 DIAKENELRTKAEEEADKLNKEVEDLTASLF--DEA--------NNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444567777776652 332 32 44445666666666666666664
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.39 E-value=2.1e+02 Score=27.99 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHHH-HHHHHhhhccCCCCChhHHh-hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 009074 76 AAQFAAEA-TLRRVHAAQKDDDMPPIEAI-LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA 153 (544)
Q Consensus 76 AAQfAAEA-tLRRvha~QKdddmppieai-iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA 153 (544)
..+|.+|- +|.++|.-- .+|+-+. .+|-+ ++..++.+...++...++++.....-..+..+.+..++.+....
T Consensus 323 ~~eF~~Eve~L~~i~HrN----LV~L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
T 3oja_A 323 SETERLECERENQARQRE----IDALKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397 (487)
T ss_dssp --CHHHHHHHHHHHHHHH----HHHHHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcccccc----hhhHHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchh
Confidence 45677764 566665532 3444442 33444 55556666668888888888888877777777777777765544
Q ss_pred h
Q 009074 154 S 154 (544)
Q Consensus 154 ~ 154 (544)
-
T Consensus 398 e 398 (487)
T 3oja_A 398 E 398 (487)
T ss_dssp C
T ss_pred h
Confidence 3
No 44
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=46.62 E-value=69 Score=28.65 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=63.9
Q ss_pred hccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHH-----HHH---H-----HhhhccCCC
Q 009074 30 ALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEA-----TLR---R-----VHAAQKDDD 96 (544)
Q Consensus 30 ~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEA-----tLR---R-----vha~QKddd 96 (544)
.--||||+-+.+-+.+.+.-+++. |= +.|+|..|+=+.-..+ .+| | +...+||.+
T Consensus 18 ~~~~~~~~~~~n~~~~~~~~IRl~----------iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~e 85 (123)
T 3lhp_S 18 VRMDKAVEAFKNKLDKFKAAVRKV----------FP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKE 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS----------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTT
T ss_pred HHHHHHHHHHHHHHhcCCCeEEee----------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCC
Confidence 344788988888888887766542 22 6666666554433322 133 3 445667766
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhc-hHHHHHHhhhHHHHHHH
Q 009074 97 MPPIEAILAPLEAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 141 (544)
Q Consensus 97 mppieaiiApLeaelk~~r~Ei~kLqdd-nkaLerltksKEaALle 141 (544)
++ |-+.+.+..+|++|.|. .+-+|.+++.||+.|++
T Consensus 86 iS---------EDe~k~~e~eIQKLTDkyIkkID~ll~~KEKEIm~ 122 (123)
T 3lhp_S 86 IN---------WFDISQSLWDVQKLTDAAIKKIEAALADMEAWLTQ 122 (123)
T ss_dssp SC---------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55 67889999999999987 57899999999999874
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=45.87 E-value=1.5e+02 Score=25.91 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=61.0
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHh-chhhhhhhHHHHHHHHHHHHH
Q 009074 154 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKV----AEVEKLTQTVRELEEAVLA-GGAAANAVRDYQRKVQEMNEE 228 (544)
Q Consensus 154 ~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKv----aEVEKLtqTv~ELEEAvLa-ggaaaNAvrdyqrq~~elneE 228 (544)
.-|+-||+....|.+|++-...+.+-|+.--..|. .+|-.|+..+..-|-.+.. -++-.=+.++-+.++++|...
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999988888887766544443 4677788777777766665 366666677778888888888
Q ss_pred hhhHHHHHhhh
Q 009074 229 RKTLDRELARA 239 (544)
Q Consensus 229 krtLerELARa 239 (544)
+..+-.||-|.
T Consensus 86 Re~V~~eL~rL 96 (112)
T 1x79_B 86 REQVSEELVRL 96 (112)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHHHHHH
Confidence 88777777543
No 46
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=44.85 E-value=31 Score=30.90 Aligned_cols=45 Identities=33% Similarity=0.378 Sum_probs=38.4
Q ss_pred HhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhc-hHHHHHHhhhHHHHHHH
Q 009074 88 VHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 141 (544)
Q Consensus 88 vha~QKdddmppieaiiApLeaelk~~r~Ei~kLqdd-nkaLerltksKEaALle 141 (544)
+...+||.+++ |-+++.+..+|++|.|. .+-+|.+++.||..|.+
T Consensus 67 lKKl~KdkeIS---------EDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI~~ 112 (121)
T 3lf9_A 67 LAALGKDKEVN---------WFDISQALWEIQKLTDVAVKKIDEVLAAKEKELME 112 (121)
T ss_dssp HHHGGGCTTSC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhcCCCC---------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777766 78899999999999987 57899999999999875
No 47
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.81 E-value=45 Score=34.95 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=13.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHh
Q 009074 33 LPVFPKLTEELSKVEEKLKLAENLI 57 (544)
Q Consensus 33 dKaveEl~~El~K~dEKLk~tE~ll 57 (544)
++.|++|.+.|..+..+-..+..++
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i 123 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYV 123 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3456666666666655544444443
No 48
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.37 E-value=99 Score=25.32 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=23.1
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMH 184 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~h 184 (544)
||++-=.-.+|..|||..++|--+|-++|
T Consensus 58 vD~a~l~r~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 58 VDNASLARLDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45555556789999999999999988776
No 49
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=44.30 E-value=1.1e+02 Score=25.49 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=21.7
Q ss_pred HHHHhhhhHHhhhhhHHHHHHHHHHHHH
Q 009074 149 ALAKASMVDDLQNKNQELMKQIEICQEE 176 (544)
Q Consensus 149 AlakA~~V~dlQN~N~EL~kQiEIcqEE 176 (544)
--.|-+.|.-||++.-+|++||-+...+
T Consensus 47 ~~~R~~~V~~lq~Ki~elkrqlAd~va~ 74 (78)
T 2ic6_A 47 LQSRRAAVSALETKLGELKRELADLIAA 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677899999999999998776543
No 50
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.41 E-value=1.6e+02 Score=25.26 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHH
Q 009074 38 KLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE 82 (544)
Q Consensus 38 El~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAE 82 (544)
.+.+++.++.++|.-.+......--...++..||- .|..|..+|
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~-~L~~qL~~E 60 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKN-DLQLQVQAE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34555555555555444444333333344444433 444444443
No 51
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.21 E-value=94 Score=26.00 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=61.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH--HH-----------------------Hhchh
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEE--AV-----------------------LAGGA 210 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEE--Av-----------------------Lagga 210 (544)
+..++...+.|..+++.++....-| +.++.|++++-.+|..|.. .. +.-|+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l----~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAV----RATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence 4556667777777777777766655 5677888888888888873 11 11122
Q ss_pred -------hhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 211 -------AANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 211 -------aaNAvrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
...|+.+|.+++..+......|+..+...+-..+
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999977665444
No 52
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.01 E-value=32 Score=27.76 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 134 SKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 134 sKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
-|+.-+-+.|..|..-.. ...++++.|..|..||+.++.|+.+|
T Consensus 26 RK~~~i~~LE~~v~~le~---~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKE---LHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555555544433221 23456777777777777777777654
No 53
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=41.48 E-value=2.2e+02 Score=26.41 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHHHHHhhhchHHHHHHhhhH-HHHHHHHHHHHHHHHH------------HhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 114 ARQEIAKLQDDNKALDRLTKSK-EAALLEAERTVQVALA------------KASMVDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 114 ~r~Ei~kLqddnkaLerltksK-EaALleAeR~v~~Ala------------kA~~V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
+++-+++||+-.-+|+..+..- --.|+..+-.+|.++. --.+++.|+..-++|.++|+++++....+
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788898888888888733 3344555555555544 22356777777777777777777755544
Q ss_pred H
Q 009074 181 D 181 (544)
Q Consensus 181 d 181 (544)
+
T Consensus 90 ~ 90 (174)
T 2p22_A 90 Q 90 (174)
T ss_dssp H
T ss_pred H
Confidence 4
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.57 E-value=2.1e+02 Score=26.34 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHHHHHHh-HHHHHHhhhHHHHHHHHH
Q 009074 159 LQNKNQELMKQIEICQEEN-KILDKMHRQKVAEVEKLT 195 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEn-kiLdk~hRQKvaEVEKLt 195 (544)
||=++..+...+..+++|| .++++.-.+|-.|.+++-
T Consensus 108 Lqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 108 GTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777788888 455666666666666543
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.46 E-value=3.4e+02 Score=28.30 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=62.3
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHH-HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 105 APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALA-KASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 105 ApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Ala-kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
-++.-.|...++++..++..++-...+++.=--.|-.-...+..-.. +-..-+||..+...|++-|+.--..-+.|...
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555566666666666666665555554432222222222211111 12234899999999999998766689999999
Q ss_pred hhhHHHHHHHHHHHH
Q 009074 184 HRQKVAEVEKLTQTV 198 (544)
Q Consensus 184 hRQKvaEVEKLtqTv 198 (544)
.|..+.+|.||.--|
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999999
No 56
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=39.03 E-value=1.5e+02 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.9
Q ss_pred HHHHhhhhHHhhhhhHHHHHHHHHHHHHhH
Q 009074 149 ALAKASMVDDLQNKNQELMKQIEICQEENK 178 (544)
Q Consensus 149 AlakA~~V~dlQN~N~EL~kQiEIcqEEnk 178 (544)
--.|-..|.-||++.-+|++||-+...+-+
T Consensus 47 ~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 47 LQSRRAAVSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345667788999999999999987665443
No 57
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.46 E-value=29 Score=28.27 Aligned_cols=17 Identities=35% Similarity=0.687 Sum_probs=10.6
Q ss_pred ccchhhHHHH-----hhhhHHH
Q 009074 261 VMPVKQWLEE-----RRFLQGE 277 (544)
Q Consensus 261 VmPVKqWLEE-----rR~LQGE 277 (544)
+|-||.-|+- |++|.||
T Consensus 61 LlnvK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 61 LLDIKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHcCC
Confidence 3777766653 6666665
No 58
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=37.77 E-value=98 Score=27.49 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=21.0
Q ss_pred HHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 009074 148 VALAKASMVDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 148 ~AlakA~~V~dlQN~N~EL~kQiEIcqE 175 (544)
.--.|-+.|.-||++.-||++||-....
T Consensus 63 tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 63 TLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667788899999999999876544
No 59
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.58 E-value=58 Score=27.08 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHH
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQ 116 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~ 116 (544)
++-...+..++..|.-.+.+|++|.+|+.-+.. +.=+++-+-|+.||.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~--------------------------------~~R~~~~~klr~Yk~ 81 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPP--------------------------------QSRGMYSNRMRSYKQ 81 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT--------------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------------------------------HhHHHHHHHHHHHHH
Confidence 666778888999999999999999998776532 122367778888888
Q ss_pred HHHHhhhchH
Q 009074 117 EIAKLQDDNK 126 (544)
Q Consensus 117 Ei~kLqddnk 126 (544)
++.+|+.+-+
T Consensus 82 dL~~lk~elk 91 (102)
T 1vcs_A 82 EMGKLETDFK 91 (102)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 60
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.53 E-value=1.6e+02 Score=24.61 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=31.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHHHhhhHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag-gaaaNAvrdyqrq~~elneEkrtLer 234 (544)
+..||++|.-|.++|..... +--.+++.+...|..||..+... ..-+--.++|| +|..-|-.|+-
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~----------~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq----~LlnvKl~Le~ 79 (95)
T 3mov_A 14 YFQGQKESRACLERIQELED----------LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE----QLLDVKLALDM 79 (95)
T ss_dssp ----CCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44566666666555544333 22335555666666666655432 11222234443 44455555555
Q ss_pred HHh
Q 009074 235 ELA 237 (544)
Q Consensus 235 ELA 237 (544)
|+|
T Consensus 80 EIa 82 (95)
T 3mov_A 80 EIS 82 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 61
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.47 E-value=1.6e+02 Score=24.79 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhh
Q 009074 188 VAEVEKLTQTVRELEEAVLAGGAAA 212 (544)
Q Consensus 188 vaEVEKLtqTv~ELEEAvLaggaaa 212 (544)
..||++|...+.+ +.+.|++|
T Consensus 58 ~~e~~~l~~~~ee----lq~~~~~~ 78 (81)
T 1wt6_A 58 EAHVRQLQERMEL----LQAEGATA 78 (81)
T ss_dssp HHHHHHHHHHHHH----HHC-----
T ss_pred HHHHHHHHHHHHH----HHccchhh
Confidence 3455555555555 34566554
No 62
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.35 E-value=2.7e+02 Score=26.17 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=40.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhhhh----hHHHHHHH
Q 009074 157 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANA----VRDYQRKV 222 (544)
Q Consensus 157 ~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag-gaaaNA----vrdyqrq~ 222 (544)
..+|.+|..|. ++|.-|.....+-...+|++..+-.++|..+++- -..-|. +|.+|+++
T Consensus 135 ~~~~~~~~~L~-------~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 135 AENQAKNEHLQ-------KENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555555554 4444455555556688899999999999998885 666777 77777544
No 63
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=36.46 E-value=67 Score=26.79 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHH
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQ 116 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~ 116 (544)
++-..-+..++..|.-.+.+|+++.+|+.-+..--| +++-+-|+.||.
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R--------------------------------~~~~~klr~Yk~ 92 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFR--------------------------------NPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH--------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--------------------------------HHHHHHHHHHHH
Confidence 677778889999999999999999998876642222 356778888888
Q ss_pred HHHHhhhc
Q 009074 117 EIAKLQDD 124 (544)
Q Consensus 117 Ei~kLqdd 124 (544)
++.+|+.+
T Consensus 93 dL~~lk~e 100 (102)
T 2qyw_A 93 DLAKLHRE 100 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88887654
No 64
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.86 E-value=39 Score=31.25 Aligned_cols=45 Identities=33% Similarity=0.438 Sum_probs=36.8
Q ss_pred HHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Q 009074 149 ALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEK 193 (544)
Q Consensus 149 AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEK 193 (544)
|..|-.+|.||++-...|.+++|..|+|-.|.-+|.|-.---|..
T Consensus 6 aE~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQ 50 (167)
T 4gkw_A 6 VEDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQ 50 (167)
T ss_dssp -CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455678899999999999999999999999999998864433333
No 65
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.27 E-value=1.7e+02 Score=27.84 Aligned_cols=46 Identities=26% Similarity=0.448 Sum_probs=29.1
Q ss_pred HHHHHHHh-hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 009074 146 VQVALAKA-SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV 205 (544)
Q Consensus 146 v~~AlakA-~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAv 205 (544)
++..|..| ..|..||++|..|..|++ .|-.||+.|...+..|++.+
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~--------------~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLD--------------TKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhh
Confidence 45555555 457899999999999988 45566777777777777665
No 66
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.42 E-value=2.2e+02 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHH
Q 009074 195 TQTVRELEEAVLAGGAAANAVRDYQRKVQEMNE 227 (544)
Q Consensus 195 tqTv~ELEEAvLaggaaaNAvrdyqrq~~elne 227 (544)
..+...||++--....|=.-|-.+.|+++-|.+
T Consensus 68 ~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 68 HKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333444454433322222226666777776654
No 67
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.11 E-value=1.9e+02 Score=23.29 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHH
Q 009074 215 VRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerE 235 (544)
+..|+.++.++..+...|..+
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 68
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.33 E-value=45 Score=27.46 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=31.5
Q ss_pred hccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 009074 23 CSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDE 70 (544)
Q Consensus 23 kv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndE 70 (544)
..|++-..|++ ++.+-.+||...|+.+...|..|..|.-+|+.|..+
T Consensus 16 ~~mgti~eLq~-~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 16 EGRGSLRDLQY-ALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp ---CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454333432 556666777788888888888888888888887654
No 69
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.37 E-value=2.8e+02 Score=24.40 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHH
Q 009074 145 TVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQE 224 (544)
Q Consensus 145 ~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~e 224 (544)
.|=.||--|.=.-.++.++.+|..+|+.+..|.--|-.=.-..-.+.+.+.+.+.+| ++++.+
T Consensus 59 aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l-----------------~~~~~~ 121 (138)
T 3hnw_A 59 TDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL-----------------KSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH
Q ss_pred HHHHhhhHHHHHhhhh
Q 009074 225 MNEERKTLDRELARAK 240 (544)
Q Consensus 225 lneEkrtLerELARaK 240 (544)
|+.+...|+.||...+
T Consensus 122 l~~~~~~le~~~~~~~ 137 (138)
T 3hnw_A 122 YQKNIVKLETELNDSK 137 (138)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhc
No 70
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.29 E-value=2.9e+02 Score=24.41 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhh-hHHHHHHH-------HHHHHHhhhHHHHHhhhhhh
Q 009074 187 KVAEVEKLTQTVRELEEAVLAGGAAANA-VRDYQRKV-------QEMNEERKTLDRELARAKVT 242 (544)
Q Consensus 187 KvaEVEKLtqTv~ELEEAvLaggaaaNA-vrdyqrq~-------~elneEkrtLerELARaKv~ 242 (544)
|-.++.+|.+++..+++++-- =..-.| |.-|..-| ..+++|+-.|..+|+...--
T Consensus 43 Kq~~idelk~ei~q~~~~lE~-I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMET-VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 666777777777777665421 111222 45555544 46888888888888765443
No 71
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.11 E-value=2.2e+02 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHH
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAAL 139 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaAL 139 (544)
++.++..++.++..|+.....+...+..-+..+
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666555555544444433333
No 72
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.89 E-value=55 Score=26.42 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhh
Q 009074 189 AEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 238 (544)
Q Consensus 189 aEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELAR 238 (544)
.+|++|.+.+.+|++.+-..+--+ .|| .+++++..+...++.+|..
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~---~d~-~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFS---QPH-EQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGG---SCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccc---CCH-HHHHHHHHHHHHHHHHHHH
Confidence 346677777777776664443221 233 3567777777777777743
No 73
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.88 E-value=2.1e+02 Score=22.71 Aligned_cols=39 Identities=8% Similarity=0.261 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhh
Q 009074 211 AANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV 249 (544)
Q Consensus 211 aaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~v 249 (544)
-.|....++.+++.+...+..|+.++.....+..-+..+
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l 44 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 357788999999999999999999999888877765544
No 74
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.69 E-value=36 Score=24.36 Aligned_cols=20 Identities=40% Similarity=0.760 Sum_probs=12.9
Q ss_pred HHHhHHHHHhHHHHHhhhcc
Q 009074 487 KKMRREVAAMEKEVAAMRVE 506 (544)
Q Consensus 487 KKmrREvaa~EKEvaa~r~~ 506 (544)
--++.|+|+..||+++.+.+
T Consensus 5 aalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777766543
No 75
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=29.26 E-value=2.7e+02 Score=23.75 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Q 009074 161 NKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV 198 (544)
Q Consensus 161 N~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv 198 (544)
|..++|++|.++++|=.+.+-.+++.=..-+.+|.+-+
T Consensus 43 ~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 43 VDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999874444444444433
No 76
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=27.07 E-value=6.2e+02 Score=27.32 Aligned_cols=174 Identities=20% Similarity=0.249 Sum_probs=98.6
Q ss_pred HHHhhhhhhhhhhccccchhccCCch---hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHH-HHHH
Q 009074 11 SLFFAMSKITILCSMGADFALNLPVF---PKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE-ATLR 86 (544)
Q Consensus 11 ~l~~A~sei~~lkv~~~~e~lKdKav---eEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAE-AtLR 86 (544)
|+|-+.+.--.|-|+++-+..-|.-= -++...|..++..-+--+-. +..|-.|.+. |..+ -.++
T Consensus 64 s~GesvKqAVilNV~G~~~~~pDPLsPgE~~~~~Kl~eLE~e~k~d~~~-~khn~~I~~k-----------~g~~l~~v~ 131 (526)
T 3iyk_A 64 SYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVR-LKYNDKIKEK-----------FGKELEEVY 131 (526)
T ss_pred chHHHHHHHHHHHhcccCCCCCCCCCHhHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHH-----------HHHHHHHHH
Confidence 67888888889999999888877631 12222233222222211111 1112222221 2211 1122
Q ss_pred HHhhhccCC---CCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 009074 87 RVHAAQKDD---DMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKN 163 (544)
Q Consensus 87 Rvha~QKdd---dmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N 163 (544)
.+-.+|-.. +.--|+-+=..|++=++..+.|-..|+.=.+||-+ |. ..|+.-+ ..||++.-++.
T Consensus 132 ~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~k-----E~-------~~Rt~dE-~~mi~~yr~k~ 198 (526)
T 3iyk_A 132 NFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQK-----EI-------GERTHAE-TVMVKEYRDKI 198 (526)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HH-------HhhcHHH-HHHHHHHHHHH
Confidence 222222121 22345555566666667777777777766666642 22 2333333 45889999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhchhhhhhh
Q 009074 164 QELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE--LEEAVLAGGAAANAV 215 (544)
Q Consensus 164 ~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~E--LEEAvLaggaaaNAv 215 (544)
.-|+.-||+.++ -|+=--|-|+--++..|-| -||.=+-|.++||++
T Consensus 199 ~aL~~aIe~Er~------~~~EEAIqe~~dmsaeI~E~AaeEVP~vGag~At~i 246 (526)
T 3iyk_A 199 DALKNAIEVERD------GMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAV 246 (526)
T ss_pred HHHHHHHHHHHh------HHHHHHHHHHhcchHHHHHHHhhhCCcchHHHHHHH
Confidence 999999998764 3455667788888888888 566666676666663
No 77
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.59 E-value=1.2e+02 Score=25.74 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 009074 148 VALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHR 185 (544)
Q Consensus 148 ~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hR 185 (544)
.|..|....+|.-..|.+|..+|+..++|+..|.+++.
T Consensus 33 lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 33 VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556667777899999999999999888877664
No 78
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.53 E-value=2.6e+02 Score=22.67 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHHHhhhHHHHHh
Q 009074 189 AEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 189 aEVEKLtqTv~ELEEAvLag-gaaaNAvrdyqrq~~elneEkrtLerELA 237 (544)
.+++.+..+|..||..+-.. +.-+--.++| ++|..-|-.|+-|+|
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EY----q~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEY----QELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHH
Confidence 46666666777776665443 1111123444 345555666666654
No 79
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=26.41 E-value=2.8e+02 Score=23.07 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=24.9
Q ss_pred hhhccHHHHHHHHH-------HHHHhh-hchHHHHHHhhhHHHHHHHHH
Q 009074 103 ILAPLEAELKLARQ-------EIAKLQ-DDNKALDRLTKSKEAALLEAE 143 (544)
Q Consensus 103 iiApLeaelk~~r~-------Ei~kLq-ddnkaLerltksKEaALleAe 143 (544)
++.-|+.++..+.. |-..|. -|..+|+.++..|+.-+...+
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~ 56 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLE 56 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554 333332 355688999999988776433
No 80
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.38 E-value=1.5e+02 Score=23.08 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 009074 133 KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 133 ksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqE 175 (544)
++.++|--.=+|..+-.-.--.-|+.|.+.|.+|..+|+...+
T Consensus 16 rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 16 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665665554444445556666666666665554443
No 81
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.91 E-value=1.6e+02 Score=27.12 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=31.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 009074 34 PVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 72 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK 72 (544)
+.|..|+.|+..+..|++-.+-.|+-|+.-+-.++||=-
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~ 106 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888888888888777777777643
No 82
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.74 E-value=2.8e+02 Score=22.77 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh--hhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHH
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKI--NDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLA 114 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKkl--ndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~ 114 (544)
++=..-+..++..+.-++.+|++|.+|+.-+ ..--| +++-+-|+.|
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R--------------------------------~~~~~klr~Y 77 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASER--------------------------------ATYKAKLREW 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--------------------------------HHHHHHHHHH
Confidence 5677788889999999999999999998766 32222 3566777888
Q ss_pred HHHHHH-hhhchHH
Q 009074 115 RQEIAK-LQDDNKA 127 (544)
Q Consensus 115 r~Ei~k-Lqddnka 127 (544)
|.++.+ |+.+-+-
T Consensus 78 k~dl~~~lk~~lk~ 91 (97)
T 3onj_A 78 KKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 888877 7665543
No 83
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.63 E-value=1.2e+02 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 145 TVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 145 ~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
||+.|..| +..||.++++|..+++....+|..|
T Consensus 41 iL~~Ai~Y---I~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 41 ILDKATEY---IQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 5566777777666655555555444
No 84
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.51 E-value=1.2e+02 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=28.5
Q ss_pred cChhHHHHHHHHhHhhhhhHHHH---HHHHHhHHHHHhHHHHH
Q 009074 462 KDKDDAIEILAKKVDTLTKAMEV---EAKKMRREVAAMEKEVA 501 (544)
Q Consensus 462 kdKddaIeML~KKVdtLtKAmEV---EaKKmrREvaa~EKEva 501 (544)
.+.|+|++.|-+|++.|++.++. ...+++..+..++.++.
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999987753 34455555555555443
No 85
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=25.27 E-value=1.5e+02 Score=26.49 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=0.0
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHh
Q 009074 99 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEICQEEN 177 (544)
Q Consensus 99 pieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~-~V~dlQN~N~EL~kQiEIcqEEn 177 (544)
|-+...+|++++|..-..|+.+| +.+. -|++|||++-+|.++|.-.+..+
T Consensus 41 ~ke~~~~~~qsele~k~aeLe~l-----------------------------eeL~~ki~eL~~kvA~le~e~~~~e~~~ 91 (125)
T 2pms_C 41 AKEGFRAPLQSKLDAKKAKLSKL-----------------------------EELSDKIDELDAEIAKLEDQLKAAEENN 91 (125)
T ss_dssp ------CHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-----------------------------HHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred -------HHHHHHhhhHHHHHHHHHHHHHHH
Q 009074 178 -------KILDKMHRQKVAEVEKLTQTVREL 201 (544)
Q Consensus 178 -------kiLdk~hRQKvaEVEKLtqTv~EL 201 (544)
.-|++-.--|-+|.+|........
T Consensus 92 ~~~~~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 92 NVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 86
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.14 E-value=73 Score=24.92 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.6
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHH
Q 009074 98 PPIEAILAPLEAELKLARQEIAKLQDDNKALDR 130 (544)
Q Consensus 98 ppieaiiApLeaelk~~r~Ei~kLqddnkaLer 130 (544)
..+|.|+|.||.+--.....|+.|..|+--|||
T Consensus 20 aklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 457889999999888888888888888887776
No 87
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=23.21 E-value=3.5e+02 Score=23.02 Aligned_cols=68 Identities=25% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Q 009074 126 KALDRLTKSKEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV 198 (544)
Q Consensus 126 kaLerltksKEaALleAeR~v~~AlakA~-~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv 198 (544)
.++.||.|-+..--.|+..- .+|-. |-.+ ..-.++|++|.++++|-.+.+-.+++.=...+.+|.+-+
T Consensus 14 ~~vkRL~KE~~~Y~kE~~~q----~~riek~k~e-~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 82 (108)
T 1h7c_A 14 GVVRRLVKERVMYEKEAKQQ----EEKIEKMRAE-DGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRIL 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46777776654444433211 11111 1121 223689999999999999999999885555555555544
No 88
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.12 E-value=4.5e+02 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 009074 193 KLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 193 KLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerE 235 (544)
-|...|..|++-|..-= +-++.-|.-+.++-.+...||--
T Consensus 114 ELRRrIqyLKekVdnQl---snIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV---QHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443321 22344444444444444445433
No 89
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.06 E-value=76 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh
Q 009074 145 TVQVALAKASMVDDLQNKNQELMKQIEICQEEN 177 (544)
Q Consensus 145 ~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEn 177 (544)
||+.|..| +..||.++++|..+++..+.+|
T Consensus 51 iL~~Ai~Y---I~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 51 ILDKATEY---IQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
Confidence 45555544 6778888888888888777665
No 90
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.57 E-value=2.2e+02 Score=22.69 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH
Q 009074 146 VQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQK 187 (544)
Q Consensus 146 v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQK 187 (544)
|....+----|.+||+.|.-|.+-+|..|-..|=|+++-|.-
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555678899999999999999999999999988864
No 91
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=22.27 E-value=1.7e+02 Score=25.28 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=39.7
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVREL 201 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~EL 201 (544)
.++||..-.||-..|..+.+|.==|+.-++.+.-||.-|.+.|.+|
T Consensus 44 ~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 44 EDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 4788999999999999999998777777777778999999999887
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.24 E-value=2.2e+02 Score=22.88 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHH
Q 009074 141 EAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILD 181 (544)
Q Consensus 141 eAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLd 181 (544)
.|+|..+ .-|..-+.||+.+..+|....+..+.||..|-
T Consensus 18 ~AQRafR--eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 18 AAQRAFR--KRKEDHLKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 55666777777777777766666666665554
No 93
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.68 E-value=75 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.7
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
-||-|.+++.||+.++....-||.||.-.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998643
No 94
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.68 E-value=2.1e+02 Score=27.22 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=24.5
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHH
Q 009074 97 MPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVA 149 (544)
Q Consensus 97 mppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~A 149 (544)
|-||.--=..+|..|..+...|++||-.|..|-.-+..|+..+-...+.|+++
T Consensus 1 md~~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 1 MDPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555677888888888999999999988888877766655544444433
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.59 E-value=3.7e+02 Score=22.77 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=45.9
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhHHhhhhhHHHHHHHHHHHHHh
Q 009074 105 APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA-SMVDDLQNKNQELMKQIEICQEEN 177 (544)
Q Consensus 105 ApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA-~~V~dlQN~N~EL~kQiEIcqEEn 177 (544)
-....||.-+|..|..|+-+.-++...-.+=|..|.+++..-..++..+ ..+.+|....+.++..|+-...|.
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456677888888888888888887777777888888887666555443 233455555555544444433333
No 96
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.48 E-value=3.8e+02 Score=22.83 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhHHhhhhhHHHHHHHHHHHHHh
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA-SMVDDLQNKNQELMKQIEICQEEN 177 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA-~~V~dlQN~N~EL~kQiEIcqEEn 177 (544)
...||.-+|..|..|+-+.-++.....+=|..|.+++.....++..+ ..+.+|....+.++..|+-...|.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665555666777777776655554433 233455555555444444433333
No 97
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.10 E-value=66 Score=22.80 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=16.8
Q ss_pred CChhHHhhhccHHHHHHHHHHHHH
Q 009074 97 MPPIEAILAPLEAELKLARQEIAK 120 (544)
Q Consensus 97 mppieaiiApLeaelk~~r~Ei~k 120 (544)
|-.+.+++|+||+|-|..+.....
T Consensus 1 mdqlnallasleaenkqlkakvee 24 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEE 24 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999998877655443
No 98
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.08 E-value=1.1e+02 Score=23.47 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=16.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
|+-|+..|.+|+.+++..++++.-|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766666655444
No 99
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.81 E-value=88 Score=23.74 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHhhhHHHHH
Q 009074 215 VRDYQRKVQEMNEERKTLDREL 236 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerEL 236 (544)
+++-+.+.+||++-..||.+|=
T Consensus 12 ~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 6788888999999999999984
No 100
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=20.79 E-value=1.6e+02 Score=23.54 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=40.7
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 009074 152 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 200 (544)
Q Consensus 152 kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~E 200 (544)
.|+-..|.-++.+...+|+.+-- +.+|..++-+.-.||-||-..+++
T Consensus 7 LasFLkDFD~ev~~~~~~~~~~~--~~llk~i~~~y~~eiiklp~~ir~ 53 (62)
T 2qfa_B 7 LASFLKDFDREVEIRIKQIESDR--QNLLKEVDNLYNIEILRLPKALRE 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 57888999999999999998544 778889999999999999998876
No 101
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.54 E-value=1.8e+02 Score=29.17 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 009074 184 HRQKVAEVEKLTQTVREL 201 (544)
Q Consensus 184 hRQKvaEVEKLtqTv~EL 201 (544)
.+....+--+|-.++.||
T Consensus 40 ~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 40 LIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 333333333444444444
No 102
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=20.30 E-value=92 Score=29.66 Aligned_cols=68 Identities=25% Similarity=0.446 Sum_probs=46.5
Q ss_pred hhhhhHHHHhHHHHHHH---HH-----HHHH-----HhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhc-hHHHHH
Q 009074 65 KKINDEKRASMAAQFAA---EA-----TLRR-----VHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDD-NKALDR 130 (544)
Q Consensus 65 KklndEKK~alAAQfAA---EA-----tLRR-----vha~QKdddmppieaiiApLeaelk~~r~Ei~kLqdd-nkaLer 130 (544)
=.++.|+|..|.-+.-. +| ..|| +....||.+++ |-+++.+..+|++|.|+ .+-+|.
T Consensus 127 P~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~is---------EDe~k~~e~eiQklTd~~i~~iD~ 197 (209)
T 4gfq_A 127 PALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEIT---------EDDLRGYTEDIQKETDKYIAKVDE 197 (209)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777666544322 22 2343 22344555543 67899999999999997 578999
Q ss_pred HhhhHHHHHHH
Q 009074 131 LTKSKEAALLE 141 (544)
Q Consensus 131 ltksKEaALle 141 (544)
+++.||..|++
T Consensus 198 ~l~~KEkEim~ 208 (209)
T 4gfq_A 198 IAKNKEKEIME 208 (209)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 99999999875
No 103
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.19 E-value=2.6e+02 Score=21.01 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009074 189 AEVEKLTQTVRELEEAVL 206 (544)
Q Consensus 189 aEVEKLtqTv~ELEEAvL 206 (544)
.+|..|..++..|..-++
T Consensus 43 ~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 43 SEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555555555554444
Done!