Query 009074
Match_columns 544
No_of_seqs 42 out of 44
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 18:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009074.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009074hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 68.9 20 0.0014 28.0 9.9 85 156-244 3-119 (133)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 49.6 12 0.0009 28.9 5.3 58 37-126 27-84 (89)
3 d2fupa1 a.47.5.1 (A:1-130) Hyp 47.7 54 0.0039 25.1 9.0 47 97-143 1-55 (130)
4 d2efla1 a.238.1.4 (A:1-288) Fo 32.7 1.2E+02 0.0086 24.5 15.4 18 218-235 205-222 (288)
5 d1h7ca_ a.7.5.1 (A:) Tubulin c 30.0 1.2E+02 0.0088 23.8 10.4 42 162-210 43-84 (103)
6 d1qsda_ a.7.5.1 (A:) Tubulin c 22.5 1.7E+02 0.012 23.0 8.9 69 126-198 8-77 (102)
7 d1dd5a_ d.67.3.1 (A:) Ribosome 20.6 44 0.0032 28.4 4.3 34 108-141 149-183 (184)
8 d1n2aa1 a.45.1.1 (A:81-201) Cl 20.5 86 0.0062 22.9 5.5 50 263-315 13-62 (121)
9 d1uklc_ a.38.1.1 (C:) SREBP-2 20.4 55 0.004 23.1 4.1 34 151-184 23-56 (61)
10 d2efka1 a.238.1.4 (A:10-288) C 19.1 2.1E+02 0.016 22.8 14.3 10 71-80 25-34 (279)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=68.89 E-value=20 Score=28.00 Aligned_cols=85 Identities=15% Similarity=0.270 Sum_probs=61.1
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------c-------------------h-
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA------G-------------------G- 209 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLa------g-------------------g- 209 (544)
+++|..+.+.|..+|+.++.+-..| +..+.|.+.+..++..|.+..-. | |
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l----~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~ 78 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAV----RATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecC
Confidence 3567777777777777777776665 56788888888888887653100 0 1
Q ss_pred ------hhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 210 ------AAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 210 ------aaaNAvrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
....|+..|.+++.+++.....|..++...+-...
T Consensus 79 g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~ 119 (133)
T d1fxkc_ 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12268899999999999999999988877665544
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.57 E-value=12 Score=28.90 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHH
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQ 116 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~ 116 (544)
++-..-+..++..|.-++.+|++|.||+.-+. | +.=+++-+-|+.||.
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~~p------------------------------~--s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVREIP------------------------------P--QSRGMYSNRMRSYKQ 74 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------------------------------T--TTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC------------------------------H--HHHHHHHHHHHHHHH
Confidence 56677888899999999999999999986543 3 234567788888998
Q ss_pred HHHHhhhchH
Q 009074 117 EIAKLQDDNK 126 (544)
Q Consensus 117 Ei~kLqddnk 126 (544)
++.+|+.+.+
T Consensus 75 dl~~lk~elk 84 (89)
T d1vcsa1 75 EMGKLETDFK 84 (89)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHH
Confidence 8888877644
No 3
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.65 E-value=54 Score=25.14 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=30.7
Q ss_pred CChhHHhhhccHHHHHHHHHHHHH--------hhhchHHHHHHhhhHHHHHHHHH
Q 009074 97 MPPIEAILAPLEAELKLARQEIAK--------LQDDNKALDRLTKSKEAALLEAE 143 (544)
Q Consensus 97 mppieaiiApLeaelk~~r~Ei~k--------LqddnkaLerltksKEaALleAe 143 (544)
||-....+.-|..|+..|+.=..- .+-|..+|+.++..|...+...+
T Consensus 1 m~d~~~L~~~L~~e~~~~~~L~~LL~~e~~aL~~~d~~~Le~l~~~k~~ll~~l~ 55 (130)
T d2fupa1 1 MPDSPTLLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLE 55 (130)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 454555556666677666643322 24577889999999988876655
No 4
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.70 E-value=1.2e+02 Score=24.51 Aligned_cols=18 Identities=6% Similarity=0.386 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 009074 218 YQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 218 yqrq~~elneEkrtLerE 235 (544)
|...+..+.+....++.+
T Consensus 205 ~~~~~~~~~~~~q~~e~~ 222 (288)
T d2efla1 205 YHTHIPNIFQKIQEMEER 222 (288)
T ss_dssp HHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 5
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.04 E-value=1.2e+02 Score=23.83 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchh
Q 009074 162 KNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGA 210 (544)
Q Consensus 162 ~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLagga 210 (544)
--.++++|+++++|-.+.+-.+++ +|+..+.+|++.+-..+.
T Consensus 43 dey~iKkq~~vl~Es~~mipd~~~-------Rl~~a~~~L~~~l~~e~~ 84 (103)
T d1h7ca_ 43 ENYDIKKQAEILQESRMMIPDCQR-------RLEAAYLDLQRILENEKD 84 (103)
T ss_dssp SCTHHHHHHHHHHHHHTTHHHHHH-------HHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHCCC
Confidence 467999999999999999998876 455556666665544333
No 6
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Probab=22.54 E-value=1.7e+02 Score=23.00 Aligned_cols=69 Identities=26% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh-HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Q 009074 126 KALDRLTKSKEAALLEAERTVQVALAKASMV-DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV 198 (544)
Q Consensus 126 kaLerltksKEaALleAeR~v~~AlakA~~V-~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv 198 (544)
-++-||.|-+..--.|+. ...+|-.-. .|-.+..+++++|+++.+|-.+.+-.+++-=..-|.+|.+.+
T Consensus 8 g~vkRL~KE~~~Y~kE~~----~q~~kv~k~kad~~~dey~iKkq~evL~Es~~mipd~~~RL~~a~~~L~~~l 77 (102)
T d1qsda_ 8 KALKRLTKEEGYYQQELK----DQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 77 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356666665443333332 222222222 132345799999999999999999999874444444444433
No 7
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=20.61 E-value=44 Score=28.40 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhc-hHHHHHHhhhHHHHHHH
Q 009074 108 EAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 141 (544)
Q Consensus 108 eaelk~~r~Ei~kLqdd-nkaLerltksKEaALle 141 (544)
|-+.+.+..+|+++.|+ ++-+|.+++.||..|++
T Consensus 149 eD~~k~~~~~iq~ltd~~~~~id~~~~~Kekeim~ 183 (184)
T d1dd5a_ 149 EDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 78999999999999987 57799999999999875
No 8
>d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli [TaxId: 562]}
Probab=20.47 E-value=86 Score=22.94 Aligned_cols=50 Identities=14% Similarity=0.359 Sum_probs=31.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 009074 263 PVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRG 315 (544)
Q Consensus 263 PVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~ 315 (544)
.+.|||. |+.+||+----.+--.+......+..+++++..|++||+.|.+
T Consensus 13 ~~~~wl~---~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 62 (121)
T d1n2aa1 13 KTIEWLN---YIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKD 62 (121)
T ss_dssp HHHHHHH---HHHHHTHHHHHHHHCSSSCGGGHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHH---HHHhchHHHHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3556764 6777765422222223333444555678899999999999964
No 9
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=55 Score=23.06 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=21.7
Q ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 009074 151 AKASMVDDLQNKNQELMKQIEICQEENKILDKMH 184 (544)
Q Consensus 151 akA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~h 184 (544)
-||+|+.+-=+-+..|.+|++..++|+.-|...+
T Consensus 23 ~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 23 HKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666667766665444
No 10
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.08 E-value=2.1e+02 Score=22.80 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=4.4
Q ss_pred HHHhHHHHHH
Q 009074 71 KRASMAAQFA 80 (544)
Q Consensus 71 KK~alAAQfA 80 (544)
+|+.+.-.||
T Consensus 25 eRa~iE~~Ya 34 (279)
T d2efka1 25 ERTEVEQAYA 34 (279)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
Done!