BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009075
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 198/402 (49%), Gaps = 55/402 (13%)
Query: 115 HSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTL 174
++ DFG GDG+T +++FK AI +LS+ GG +L VP G +LTG +L S+ L
Sbjct: 26 REVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIEL 82
Query: 175 YLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDG 234
++ K PV+ R Y+ L++ + +V +TG +G +DG
Sbjct: 83 HV-KGTIKFIPDPERYLPVV-----LTRFEGIELYNYSPLVYALDCENVAITG-SGVLDG 135
Query: 235 QG--ALWW----------------QQFHKGKLK------------------YTRPYLMEF 258
WW QQ KLK Y RP ++F
Sbjct: 136 SADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQF 195
Query: 259 MYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIED 318
N+ + + ++NSP W +HPV S N++++ I I + T PN DGI+P+SC IE
Sbjct: 196 YRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISS--TGPNNDGIDPESCKYMLIEK 253
Query: 319 CYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS-ATIALGSEMSGGIQDVR 377
C +GDD V +KSG D G G+P++ +++R IS S + +GSEMSGG+++V
Sbjct: 254 CRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVV 313
Query: 378 AEDIKAINTESGVRIKTAVGRGGYVKDI-YVRGMTMHTMKWAFWMTGNYGSHADNHYDPK 436
A + +N E +R+KT RGGY+++I ++ + ++ + + Y DN + +
Sbjct: 314 ARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRY----DNE-EGE 368
Query: 437 ALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATI 478
LPV++ + +++ A A R+EG+ D I I++ I
Sbjct: 369 YLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTII 410
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 159/399 (39%), Gaps = 74/399 (18%)
Query: 111 SCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLIS 170
S + ++ DFG + DGKT NTKA + AI+ S G ++ +PAG + +G+ L S
Sbjct: 151 SAKPQIVNVRDFGAIDDGKTLNTKAIQQAID-----SCKPGCRVEIPAGTYKSGALWLKS 205
Query: 171 HFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTN--------LTD 222
TL L A LL S++ +++P L Y + R SLI + +
Sbjct: 206 DMTLNLQAGAILLGSENPDDYPAGYRLYPY-----STIERPASLINAIDPNNSKPGTFRN 260
Query: 223 VIVTGDNGTIDGQGALWWQ---------------------QFH----------------- 244
+ +TG +G IDG G L + + H
Sbjct: 261 IRITG-SGVIDGNGWLRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAVSDG 319
Query: 245 ---KGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSP 301
K R LM +N+ ++ T+ N + + + N++ G+ I +
Sbjct: 320 MDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGL-IHQTYDAN 378
Query: 302 NTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY-- 359
N DGI + N + + + +GDDC+ +G E +Q ++ + Y
Sbjct: 379 NGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKA------QEQEPMKGAWLFNNYFR 432
Query: 360 --SATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTM-K 416
I GS I+D+ AE+ T+ G+R K+ GG +++ R M + K
Sbjct: 433 MGHGAIVTGSHTGAWIEDILAENNVMYLTDIGLRAKSTSTIGGGARNVTFRNNAMRDLAK 492
Query: 417 WAFWMTGNYG-SHADNHYDPKALPV-IQGINYRDIVADN 453
MT +Y S+A+ Y P +P +++ DN
Sbjct: 493 QVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDN 531
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 131/309 (42%), Gaps = 56/309 (18%)
Query: 133 TKAFKDAINQLSQYSSDGGAQLYVPAGK---WLTGSFNLISHFTLYLHKDAFLLASQDLN 189
T + A+N Q G + + AG +L+G +L S +L + K L A +N
Sbjct: 26 TSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRA---VN 77
Query: 190 EWPVIKPLPSY-------GRGRDA---AAGRYTSLIFGTNLTDVIVTGDNGTIDGQGAL- 238
+ PS G+G DA A S I+G GTIDGQG +
Sbjct: 78 NAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGP-----------GTIDGQGGVK 126
Query: 239 -------WWQQFHKGK---LKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSN-- 286
WW+ K LK P L++ + N + +++L+NSP N H V+S
Sbjct: 127 LQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDG 184
Query: 287 ILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK 346
TI P T+ NTDGI+P S N I I +GDD VA+K AY +
Sbjct: 185 FTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIK--------AYKGRAE 236
Query: 347 QLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIY 406
I L +++GSE + G+ +V +D+K T +G+RIK+ G V +
Sbjct: 237 TRNISILHNDFGTGHGMSIGSE-TMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVR 295
Query: 407 VRGMTMHTM 415
+ M +
Sbjct: 296 YSNVVMKNV 304
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 41/297 (13%)
Query: 221 TDVIVTGDNG-TIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNV 279
+D+ +TG +G +I+G G+ WW G T+P N IS L ++NSP
Sbjct: 72 SDLTITGASGHSINGDGSRWWDG-EGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVF 130
Query: 280 HPVYSSNILVQGITIIAPVTSPN----TDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD 335
S + ++ ITI N TD + + T I + + DDCVAV SG
Sbjct: 131 SVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-- 188
Query: 336 EYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGGIQDVRAEDIKAINTESGVRIKT 394
+ + C + +I ++G +++V D IN+++GVRIKT
Sbjct: 189 ----------ENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKT 238
Query: 395 AVGRGGYVKDIYVRGMTMHTM-KWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADN 453
+ G V D+ + +T+ ++ K+ + NYG D + P G+ D V DN
Sbjct: 239 NIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYG-------DTSSTPT-TGVPITDFVLDN 290
Query: 454 VSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLP 510
V + G T I I+ WT D+ ++ G T C +P
Sbjct: 291 VHGSVVSSG------TNILIS------CGSGSCSDWTWTDV-SVSGGKTSSKCTNVP 334
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 221 TDVIVTGDNG-TIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQ---ISSLTLLNSPS 276
T++ + G +G +ID QG+ WW K T+P +F Y +++ I L +LN+P
Sbjct: 68 TNININGASGHSIDCQGSRWWDSKGSNGGK-TKP---KFFYAHSLKSSNIKGLNVLNTPV 123
Query: 277 WNVHPVYSSNILVQGITIIAPVTSP----NTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 332
++ + V + I NTD + S T I + + DDC+A+ S
Sbjct: 124 QAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINS 183
Query: 333 GWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGGIQDVRAEDIKAINTESGVR 391
G + TC + +I ++G ++ V + K +N+++GVR
Sbjct: 184 G------------TNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVR 231
Query: 392 IKTAVGRGGYVKDIYVRGMTMHTM 415
IKT G G V + G+T+ +
Sbjct: 232 IKTVSGATGSVSGVTYSGITLSNI 255
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 119/300 (39%), Gaps = 48/300 (16%)
Query: 222 DVIVT-GDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVH 280
D+ VT D IDG G+ WW K T+P +FMY +++ S+ +N + V
Sbjct: 69 DLTVTMADGAVIDGDGSRWWDSKGTNGGK-TKP---KFMYIHDVEDSTFKGINIKNTPVQ 124
Query: 281 P--VYSSNILVQGITIIAPVTSPN----TDGINPDSCTNTRIEDCYIVSGDDCVAVKSGW 334
V ++N+ + TI N TDG + T I + + DDC+A+ SG
Sbjct: 125 AISVQATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG- 183
Query: 335 DEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGGIQDVRAEDIKAINTESGVRIK 393
+ + TC + +I ++G +++V D N+ +GVRIK
Sbjct: 184 -----------ESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIK 232
Query: 394 TAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYD---PKALPVIQGINYRDIV 450
T G V +I + + + +YG + Y+ P P GI D+
Sbjct: 233 TIYKETGDVSEITYSNIQLSGIT-------DYGIVIEQDYENGSPTGTPS-TGIPITDVT 284
Query: 451 ADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLP 510
D V+ LE D T + I + WT + + ++ G T CE +P
Sbjct: 285 VDGVT--GTLE----DDATQVYI------LCGDGSCSDWTWSGV-DLSGGKTSDKCENVP 331
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 96/215 (44%), Gaps = 31/215 (14%)
Query: 214 LIFGTNLTDVIVTGDNG-TIDGQGALWWQQFHKGKLKYTRP--YLMEFMYTDNIQISSLT 270
+I G+N+T +TG +G IDG G +W +P +++ T N +I++L
Sbjct: 65 VISGSNIT---ITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLN 121
Query: 271 LLNSPSWNVHPVYSSNILVQGITIIAPV------------TSPNTDGINPDSCTNTRIED 318
+ N P SS + + G+ + + NTDG + S + +++
Sbjct: 122 IQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDN 181
Query: 319 CYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGGIQDVR 377
++ + DDCVAV SG +V+ + C + +I ++G + + V+
Sbjct: 182 NHVYNQDDCVAVTSG------------TNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQ 229
Query: 378 AEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTM 412
+ +N+++G RIK+ G G + ++ + + +
Sbjct: 230 FLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIAL 264
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 116/297 (39%), Gaps = 45/297 (15%)
Query: 223 VIVTGDNG-TIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHP 281
+ VTG +G I+ GA WW KG +P D+ I+ L + N+P
Sbjct: 97 ITVTGASGHLINCDGARWWDG--KGTSGKKKPKFFYAHGLDSSSITGLNIKNTP-LMAFS 153
Query: 282 VYSSNILVQGITIIAPVTSP----NTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEY 337
V +++I +TI NTD + + I ++ + DDC+AV SG
Sbjct: 154 VQANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG---- 209
Query: 338 GIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGGIQDVRAEDIKAINTESGVRIKTAV 396
+ + TCI + +I ++G + +++V E N+E+ VRIKT
Sbjct: 210 --------ENIWFTGGTCIGGHGLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTIS 261
Query: 397 GRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYD---PKALPVIQGINYRDIVADN 453
G G V +I + M + +YG Y+ P P G+ +D+
Sbjct: 262 GATGSVSEITYSNIVMSGIS-------DYGVVIQQDYEDGKPTGKPT-NGVTIQDV---- 309
Query: 454 VSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLP 510
+LE ++G +G A + WT D+ +T G C+ P
Sbjct: 310 -----KLESVTGSVDSG---ATEIYLLCGSGSCSDWTWDDV-KVTGGKKSTACKNFP 357
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 118 SITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTG 164
SI DFG + DG T N +A ++AI+ ++ S G +L++PA G
Sbjct: 53 SILDFGVIDDGVTDNYQAIQNAIDAVASLPS--GGELFIPASNQAVG 97
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 215 IFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNS 274
+F + T + G + DG GAL+W KG T + +LNS
Sbjct: 60 LFTIDGTGINFVGADHIFDGNGALYWDG--KGTNNGTHKPHPFLKIKGSGTYKKFEVLNS 117
Query: 275 PSW--NVHPVYSSNILVQGITI--IAPVTSP---NTDGINPDSCTNTRIEDCYIVSGDDC 327
P+ +V P +++ + GIT+ A T NTDG + S N I++C + + DDC
Sbjct: 118 PAQAISVGPT-DAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDC 175
Query: 328 VAVKSG 333
+A+ G
Sbjct: 176 IAINDG 181
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 118 SITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTG 164
SI DFG + DG T N +A ++AI+ ++ S G +L++PA G
Sbjct: 53 SILDFGVIDDGVTDNYQAIQNAIDAVASLPS--GGELFIPASNQAVG 97
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 104 SFEYNAISCRAHSASITDFGG---VGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGK 160
+F +I C +T G VG G T++ ++ N++S S+ GGA L + GK
Sbjct: 348 NFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGK 407
Query: 161 WLTGSFNL 168
L G L
Sbjct: 408 ELPGVLAL 415
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 104 SFEYNAISCRAHSASITDFGG---VGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGK 160
+F +I C +T G VG G T++ ++ N++S S+ GGA L + GK
Sbjct: 354 NFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGK 413
Query: 161 WLTGSFNL 168
L G L
Sbjct: 414 ELPGVLAL 421
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 104 SFEYNAISCRAHSASITDFGG---VGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGK 160
+F +I C +T G VG G T++ ++ N++S S+ GGA L + GK
Sbjct: 355 NFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGK 414
Query: 161 WLTGSFNL 168
L G L
Sbjct: 415 ELPGVLAL 422
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 25/109 (22%)
Query: 113 RAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHF 172
+ S+ +G GDG T + +AF+ AI + G +YVP G ++
Sbjct: 19 KQFGVSVKTYGAKGDGVTDDIRAFEKAI--------ESGFPVYVPYGTFMVSR------- 63
Query: 173 TLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLT 221
+ L + L + N VI+ + S GRG SL++ N+T
Sbjct: 64 GIKLPSNTVLTGAGKRN--AVIRFMDSVGRGE--------SLMYNENVT 102
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With Cobalt Ions
Length = 609
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 25/104 (24%)
Query: 118 SITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLH 177
S+ +G GDG T + +AF+ AI + G +YVP G ++ + L
Sbjct: 24 SVKTYGAKGDGVTDDIRAFEKAI--------ESGFPVYVPYGTFMVSR-------GIKLP 68
Query: 178 KDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLT 221
+ L + N VI+ + S GRG SL++ N+T
Sbjct: 69 SNTVLTGAGKRN--AVIRFMDSVGRGE--------SLMYNENVT 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,756,191
Number of Sequences: 62578
Number of extensions: 740432
Number of successful extensions: 1601
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 25
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)