Query 009075
Match_columns 544
No_of_seqs 386 out of 2189
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 20:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 2.7E-72 5.9E-77 594.9 43.6 363 113-509 49-425 (443)
2 PLN02155 polygalacturonase 100.0 2.3E-71 4.9E-76 579.2 43.5 358 113-508 24-393 (394)
3 PLN02188 polygalacturonase/gly 100.0 1.8E-70 3.8E-75 574.9 39.7 359 110-507 30-404 (404)
4 PLN03003 Probable polygalactur 100.0 5.5E-70 1.2E-74 572.8 39.8 362 112-512 19-394 (456)
5 PLN02218 polygalacturonase ADP 100.0 1.4E-69 3E-74 571.8 41.9 353 113-507 64-431 (431)
6 PLN03010 polygalacturonase 100.0 2.8E-68 6.2E-73 556.9 43.2 348 113-508 43-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.8E-53 3.8E-58 439.7 29.9 309 149-496 4-322 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.1E-47 2.4E-52 408.8 28.6 303 111-422 77-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 2.6E-25 5.7E-30 230.4 20.1 226 114-388 35-285 (455)
10 PF12708 Pectate_lyase_3: Pect 99.8 3E-20 6.4E-25 181.3 17.7 220 116-390 1-224 (225)
11 PLN03003 Probable polygalactur 99.8 4.6E-19 9.9E-24 187.6 23.6 208 254-494 105-344 (456)
12 PLN02155 polygalacturonase 99.8 2E-18 4.2E-23 181.3 25.1 245 255-540 108-394 (394)
13 PLN02793 Probable polygalactur 99.8 7.9E-19 1.7E-23 187.0 22.4 246 254-540 135-425 (443)
14 PLN03010 polygalacturonase 99.8 1.1E-18 2.3E-23 183.7 22.7 250 254-538 131-403 (409)
15 PLN02188 polygalacturonase/gly 99.8 2.8E-18 6E-23 180.9 23.2 251 255-537 115-403 (404)
16 PLN02218 polygalacturonase ADP 99.8 4.3E-18 9.4E-23 180.6 22.5 206 254-492 148-393 (431)
17 PF03718 Glyco_hydro_49: Glyco 99.8 9.1E-17 2E-21 168.3 24.7 270 151-480 232-553 (582)
18 PF00295 Glyco_hydro_28: Glyco 99.8 4.6E-17 9.9E-22 168.6 21.1 198 253-482 51-284 (326)
19 TIGR03805 beta_helix_1 paralle 99.6 4.1E-13 8.9E-18 138.1 25.3 225 136-422 1-250 (314)
20 COG5434 PGU1 Endopygalactoruna 99.3 1.9E-11 4.1E-16 131.8 14.8 212 211-454 165-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.1 1.1E-09 2.4E-14 112.8 16.6 164 220-415 31-203 (314)
22 PF13229 Beta_helix: Right han 98.6 2.6E-07 5.7E-12 84.3 11.3 142 255-422 2-145 (158)
23 PF12541 DUF3737: Protein of u 98.6 1.5E-07 3.3E-12 91.6 9.4 80 307-420 151-230 (277)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.6 1.7E-06 3.7E-11 91.1 15.7 143 255-421 108-290 (455)
25 PF12541 DUF3737: Protein of u 98.5 3.6E-07 7.7E-12 89.1 9.2 114 258-416 94-207 (277)
26 PF13229 Beta_helix: Right han 98.4 3.4E-06 7.3E-11 76.9 10.8 152 216-411 4-157 (158)
27 PF03718 Glyco_hydro_49: Glyco 98.3 6.6E-06 1.4E-10 87.6 14.0 173 279-480 323-514 (582)
28 PRK10123 wcaM putative colanic 98.2 7.8E-05 1.7E-09 73.5 16.2 52 113-177 31-85 (464)
29 PF05048 NosD: Periplasmic cop 98.1 3.4E-05 7.5E-10 76.2 12.9 114 255-392 37-151 (236)
30 PF07602 DUF1565: Protein of u 98.1 0.00014 2.9E-09 72.0 16.6 39 133-176 15-58 (246)
31 PF05048 NosD: Periplasmic cop 98.1 2.5E-05 5.3E-10 77.3 11.0 137 254-421 14-151 (236)
32 COG3866 PelB Pectate lyase [Ca 98.0 0.00021 4.6E-09 71.2 16.4 63 215-296 95-165 (345)
33 PF14592 Chondroitinas_B: Chon 98.0 0.00017 3.6E-09 76.2 16.5 32 132-168 3-34 (425)
34 smart00656 Amb_all Amb_all dom 98.0 6E-05 1.3E-09 72.2 11.6 112 284-415 39-166 (190)
35 COG3420 NosD Nitrous oxidase a 98.0 0.00063 1.4E-08 68.8 18.3 144 149-332 32-179 (408)
36 COG3866 PelB Pectate lyase [Ca 97.9 0.00012 2.7E-09 72.8 11.9 126 256-393 95-237 (345)
37 PLN02480 Probable pectinestera 97.9 0.0011 2.3E-08 68.9 19.5 132 258-414 128-276 (343)
38 smart00656 Amb_all Amb_all dom 97.9 0.00042 9.1E-09 66.4 15.0 123 255-387 33-167 (190)
39 PF12708 Pectate_lyase_3: Pect 97.7 0.0012 2.6E-08 64.0 14.7 124 264-419 94-224 (225)
40 PF00544 Pec_lyase_C: Pectate 97.6 0.00018 3.9E-09 69.5 8.5 73 301-386 73-158 (200)
41 PLN02176 putative pectinestera 97.6 0.007 1.5E-07 62.8 19.2 130 260-414 120-270 (340)
42 PLN02682 pectinesterase family 97.4 0.04 8.7E-07 57.7 22.6 134 256-414 157-304 (369)
43 PLN02773 pectinesterase 97.3 0.021 4.5E-07 58.8 19.1 135 257-414 97-239 (317)
44 PLN02634 probable pectinestera 97.2 0.052 1.1E-06 56.7 21.1 131 259-414 146-290 (359)
45 PLN02432 putative pectinestera 97.1 0.062 1.3E-06 54.8 19.4 132 258-414 90-229 (293)
46 PLN02497 probable pectinestera 97.1 0.093 2E-06 54.4 20.7 132 258-414 111-263 (331)
47 PRK10531 acyl-CoA thioesterase 96.9 0.22 4.9E-06 53.0 22.6 118 255-386 199-336 (422)
48 PLN02933 Probable pectinestera 96.9 0.094 2E-06 57.6 20.3 140 256-415 299-454 (530)
49 PF00544 Pec_lyase_C: Pectate 96.9 0.012 2.6E-07 56.8 11.9 128 256-393 39-188 (200)
50 PLN02713 Probable pectinestera 96.9 0.082 1.8E-06 58.7 19.8 140 256-415 334-489 (566)
51 PF01095 Pectinesterase: Pecti 96.9 0.012 2.6E-07 60.3 12.4 133 258-415 83-236 (298)
52 PLN02170 probable pectinestera 96.9 0.11 2.4E-06 56.9 20.1 135 255-414 306-451 (529)
53 PLN02304 probable pectinestera 96.8 0.11 2.4E-06 54.6 19.1 132 258-414 158-311 (379)
54 PLN02708 Probable pectinestera 96.8 0.14 3E-06 56.9 20.5 139 256-414 324-486 (553)
55 PLN02201 probable pectinestera 96.8 0.14 3E-06 56.2 20.3 140 256-415 287-442 (520)
56 PLN02671 pectinesterase 96.8 0.15 3.2E-06 53.4 19.6 132 257-414 149-294 (359)
57 PLN02217 probable pectinestera 96.8 0.093 2E-06 59.1 19.2 139 257-415 332-486 (670)
58 PLN02468 putative pectinestera 96.8 0.13 2.8E-06 57.2 20.2 138 257-414 340-489 (565)
59 PLN02506 putative pectinestera 96.7 0.13 2.8E-06 56.8 19.7 134 256-414 313-458 (537)
60 PLN02484 probable pectinestera 96.7 0.22 4.8E-06 55.7 21.0 140 256-415 354-509 (587)
61 PLN02665 pectinesterase family 96.6 0.14 3.1E-06 53.7 18.2 134 256-415 148-298 (366)
62 PLN03043 Probable pectinestera 96.6 0.21 4.5E-06 55.3 20.4 141 255-415 306-462 (538)
63 PLN02301 pectinesterase/pectin 96.6 0.22 4.8E-06 55.1 20.3 139 256-414 317-471 (548)
64 PLN02916 pectinesterase family 96.5 0.26 5.6E-06 53.8 20.1 141 255-415 270-426 (502)
65 PLN02416 probable pectinestera 96.5 0.2 4.4E-06 55.4 19.4 138 257-414 312-465 (541)
66 PLN02313 Pectinesterase/pectin 96.5 0.25 5.5E-06 55.2 20.0 139 256-414 356-510 (587)
67 PLN02995 Probable pectinestera 96.4 0.29 6.3E-06 54.2 19.9 138 258-415 308-461 (539)
68 PLN02745 Putative pectinestera 96.4 0.36 7.8E-06 54.0 20.7 139 256-414 366-520 (596)
69 PLN02314 pectinesterase 96.4 0.29 6.3E-06 54.8 19.6 139 256-415 359-509 (586)
70 PLN02197 pectinesterase 96.2 0.42 9.1E-06 53.3 19.8 138 257-414 359-513 (588)
71 PLN02990 Probable pectinestera 96.2 0.38 8.2E-06 53.7 19.3 139 257-415 342-496 (572)
72 PLN02488 probable pectinestera 96.2 0.58 1.3E-05 51.0 19.9 138 257-414 279-432 (509)
73 PF12218 End_N_terminal: N ter 96.0 0.0075 1.6E-07 45.7 3.2 37 124-166 1-38 (67)
74 PF01696 Adeno_E1B_55K: Adenov 95.8 0.46 9.9E-06 49.9 16.8 53 118-185 45-99 (386)
75 PRK10123 wcaM putative colanic 95.3 1.2 2.6E-05 44.6 16.7 48 403-462 301-352 (464)
76 COG3420 NosD Nitrous oxidase a 95.1 0.13 2.8E-06 52.5 9.4 63 255-322 122-191 (408)
77 PF03211 Pectate_lyase: Pectat 94.2 0.68 1.5E-05 44.9 11.7 129 286-448 62-194 (215)
78 COG4677 PemB Pectin methyleste 94.1 7.2 0.00016 40.0 18.9 141 258-414 185-350 (405)
79 PF03211 Pectate_lyase: Pectat 91.7 2.4 5.1E-05 41.2 11.3 129 261-409 60-194 (215)
80 PF01696 Adeno_E1B_55K: Adenov 90.8 3.6 7.7E-05 43.4 12.4 59 259-323 118-177 (386)
81 PF07602 DUF1565: Protein of u 87.2 3 6.5E-05 41.5 8.5 39 283-323 95-133 (246)
82 TIGR03804 para_beta_helix para 87.0 0.46 1E-05 33.7 2.0 27 305-331 1-27 (44)
83 PF14592 Chondroitinas_B: Chon 86.1 1.9 4E-05 46.1 6.8 20 373-392 309-328 (425)
84 TIGR03804 para_beta_helix para 84.7 0.62 1.3E-05 33.1 1.8 39 279-322 2-40 (44)
85 PLN02773 pectinesterase 83.1 12 0.00026 38.7 11.0 109 283-415 100-212 (317)
86 PF08480 Disaggr_assoc: Disagg 81.2 14 0.00031 34.9 9.6 43 345-387 63-110 (198)
87 PLN02665 pectinesterase family 77.2 24 0.00052 37.3 11.1 113 282-416 151-273 (366)
88 PLN02698 Probable pectinestera 77.2 41 0.00089 37.1 13.3 139 257-415 265-419 (497)
89 PLN02480 Probable pectinestera 74.8 29 0.00063 36.4 10.9 110 283-415 130-252 (343)
90 PLN02682 pectinesterase family 74.6 27 0.0006 36.9 10.7 111 283-415 161-280 (369)
91 PF09251 PhageP22-tail: Salmon 72.1 32 0.0007 36.6 10.2 66 345-412 263-347 (549)
92 KOG1777 Putative Zn-finger pro 71.5 87 0.0019 33.7 13.2 40 136-177 35-74 (625)
93 PLN02634 probable pectinestera 70.3 34 0.00074 36.0 10.1 110 284-415 148-266 (359)
94 PF08480 Disaggr_assoc: Disagg 69.8 27 0.00058 33.1 8.2 18 347-364 3-20 (198)
95 PLN02170 probable pectinestera 69.2 64 0.0014 35.8 12.3 113 282-416 310-428 (529)
96 PLN02708 Probable pectinestera 69.1 47 0.001 37.2 11.5 110 283-415 328-449 (553)
97 PF09251 PhageP22-tail: Salmon 68.5 21 0.00045 38.0 7.9 45 345-395 310-355 (549)
98 PLN02698 Probable pectinestera 67.0 46 0.001 36.8 10.8 113 282-416 267-386 (497)
99 PLN02671 pectinesterase 66.4 43 0.00093 35.3 9.9 110 284-415 153-270 (359)
100 PLN02916 pectinesterase family 65.8 61 0.0013 35.8 11.3 110 283-415 275-392 (502)
101 PLN02432 putative pectinestera 64.4 62 0.0013 33.2 10.4 108 283-414 92-204 (293)
102 PLN02416 probable pectinestera 64.3 87 0.0019 35.0 12.3 111 283-415 315-432 (541)
103 PLN02745 Putative pectinestera 63.7 85 0.0018 35.5 12.2 111 283-415 370-487 (596)
104 PLN02217 probable pectinestera 63.5 56 0.0012 37.4 10.8 110 283-415 335-452 (670)
105 PLN02713 Probable pectinestera 62.8 63 0.0014 36.3 11.0 111 283-415 338-455 (566)
106 PLN02506 putative pectinestera 62.1 64 0.0014 36.0 10.8 112 282-415 316-434 (537)
107 PLN02176 putative pectinestera 61.1 1.2E+02 0.0025 31.9 11.9 111 283-415 120-246 (340)
108 PLN02313 Pectinesterase/pectin 60.6 84 0.0018 35.5 11.5 112 283-416 360-478 (587)
109 PLN02484 probable pectinestera 60.3 86 0.0019 35.4 11.5 112 282-415 357-475 (587)
110 PF01095 Pectinesterase: Pecti 58.9 76 0.0017 32.6 10.1 110 283-415 85-202 (298)
111 PLN02990 Probable pectinestera 57.9 92 0.002 35.1 11.2 112 283-416 345-463 (572)
112 PLN02301 pectinesterase/pectin 57.7 90 0.002 34.9 11.0 111 283-415 321-438 (548)
113 PLN02201 probable pectinestera 57.5 1.1E+02 0.0024 34.1 11.5 111 282-415 290-408 (520)
114 PLN02933 Probable pectinestera 56.9 1.2E+02 0.0025 33.9 11.6 111 282-415 302-420 (530)
115 PLN03043 Probable pectinestera 56.7 1.2E+02 0.0026 33.9 11.8 111 283-415 311-428 (538)
116 PLN02497 probable pectinestera 54.8 93 0.002 32.5 9.9 111 283-415 113-239 (331)
117 PLN02488 probable pectinestera 54.7 1.3E+02 0.0029 33.2 11.5 112 283-416 282-400 (509)
118 PLN02468 putative pectinestera 54.0 1E+02 0.0022 34.7 10.7 111 283-415 343-460 (565)
119 PLN02197 pectinesterase 53.6 1.3E+02 0.0028 34.0 11.5 113 282-416 361-481 (588)
120 PLN02995 Probable pectinestera 52.4 1.1E+02 0.0023 34.3 10.5 111 283-415 310-427 (539)
121 PLN02314 pectinesterase 52.3 97 0.0021 35.0 10.3 112 283-416 363-481 (586)
122 PLN02304 probable pectinestera 49.9 1.6E+02 0.0034 31.4 10.8 109 283-414 160-286 (379)
123 PRK10531 acyl-CoA thioesterase 48.4 1.4E+02 0.003 32.3 10.2 123 282-415 203-336 (422)
124 smart00710 PbH1 Parallel beta- 42.3 26 0.00057 20.6 2.3 19 375-393 3-22 (26)
125 PRK09752 adhesin; Provisional 35.9 9E+02 0.019 29.8 14.9 37 375-411 223-262 (1250)
126 PF00879 Defensin_propep: Defe 34.2 74 0.0016 23.8 3.8 17 74-90 1-17 (52)
127 PHA00672 hypothetical protein 30.2 88 0.0019 27.7 4.3 31 152-183 50-80 (152)
128 smart00722 CASH Domain present 27.2 2E+02 0.0043 24.8 6.5 95 256-365 39-145 (146)
129 COG4704 Uncharacterized protei 20.1 2.5E+02 0.0055 25.3 5.3 35 130-167 59-95 (151)
130 cd07986 LPLAT_ACT14924-like Ly 20.0 99 0.0022 29.6 3.2 27 131-161 83-109 (210)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.7e-72 Score=594.95 Aligned_cols=363 Identities=25% Similarity=0.450 Sum_probs=319.8
Q ss_pred CceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCC-eEEeeeEEE----eeeeEEeeecCcEEEecCC
Q 009075 113 RAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAG-KWLTGSFNL----ISHFTLYLHKDAFLLASQD 187 (544)
Q Consensus 113 ~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G-~Yl~g~i~l----~S~~tl~l~~ga~l~~~~~ 187 (544)
.+.++||+||||+|||++|||+|||+||+++|. ..+|++|+||+| +|+++++.| +|+++|+++ ++|+++.+
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~--~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d 124 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS--SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD 124 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc--cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence 458999999999999999999999999995432 267899999999 599999999 899999996 89999999
Q ss_pred CCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhccc---CCCCCCCCeeEEEEeeecE
Q 009075 188 LNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHK---GKLKYTRPYLMEFMYTDNI 264 (544)
Q Consensus 188 ~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~---~~~~~~rp~~i~~~~~~nv 264 (544)
+++|+.. ....||++.+.+||+|+|. |+|||+|+.||..... ......||++|.|.+|+|+
T Consensus 125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv 188 (443)
T PLN02793 125 PDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL 188 (443)
T ss_pred hHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence 9888632 1235899999999999997 9999999999975321 1123468999999999999
Q ss_pred EEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCc
Q 009075 265 QISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMP 344 (544)
Q Consensus 265 ~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~ 344 (544)
+|++++++|||+|++++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~----------- 257 (443)
T PLN02793 189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN----------- 257 (443)
T ss_pred EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------
Confidence 999999999999999999999999999999999989999999999999999999999999999999986
Q ss_pred eeeEEEEEEEEeCCCCceEEEccc----ccCCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccceeEE
Q 009075 345 TKQLVIRRLTCISPYSATIALGSE----MSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFW 420 (544)
Q Consensus 345 s~nI~I~n~~~~~~~~~gIsIGs~----~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~ 420 (544)
++||+|+||+|..+ |||+|||+ +.++|+||+|+||+|.++.+|+|||||+|++|.|+||+|+||+|+++.+||.
T Consensus 258 s~nI~I~n~~c~~G--hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~ 335 (443)
T PLN02793 258 SSRIKIRNIACGPG--HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPII 335 (443)
T ss_pred cCCEEEEEeEEeCC--ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEE
Confidence 89999999999853 79999997 3468999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeeccCCCC
Q 009075 421 MTGNYGSHADNHYDPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTS 499 (544)
Q Consensus 421 I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~~~ 499 (544)
|++.|++.......+...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+++...++ ...+.|.|++|...
T Consensus 336 I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~ 414 (443)
T PLN02793 336 IDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSS 414 (443)
T ss_pred EEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeEC
Confidence 9999976432222334456899999999999986 568899999999999999999999976433 56789999999874
Q ss_pred c-cCCCCCCCC
Q 009075 500 G-VTPPPCELL 509 (544)
Q Consensus 500 ~-v~p~~c~~~ 509 (544)
+ +.|+||.+.
T Consensus 415 ~~~~p~~C~~~ 425 (443)
T PLN02793 415 GQVYPPPCFSD 425 (443)
T ss_pred CeEcCCccccC
Confidence 4 889999854
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=2.3e-71 Score=579.19 Aligned_cols=358 Identities=23% Similarity=0.391 Sum_probs=314.2
Q ss_pred CceeEEEeecCccCCCccchHHHHHHHHH-HhhccCCCCCcEEEEcCCeEEeeeEEE----eeeeEEeeecCcEEEecCC
Q 009075 113 RAHSASITDFGGVGDGKTSNTKAFKDAIN-QLSQYSSDGGAQLYVPAGKWLTGSFNL----ISHFTLYLHKDAFLLASQD 187 (544)
Q Consensus 113 ~~~~~~v~dfGa~gDg~tddT~Aiq~AI~-~~~~~~~~gg~~v~iP~G~Yl~g~i~l----~S~~tl~l~~ga~l~~~~~ 187 (544)
++.++||+||||+|||++|||+|||+||+ +|++ .+|++|+||+|+|++++|.| ||+++|+|+ ++|+++.+
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~---~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~--G~l~~~~d 98 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGS---ASSATVVVPTGTFLLKVITFGGPCKSKITFQVA--GTVVAPED 98 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHccc---CCCeEEEECCCcEEEEEEEEcccCCCCceEEEe--eEEECccc
Confidence 45789999999999999999999999996 5654 78999999999999999999 899999997 57887766
Q ss_pred CCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEE
Q 009075 188 LNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQIS 267 (544)
Q Consensus 188 ~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~ 267 (544)
+..|.. ...|+.+.+++|++|+| |+|||||+.||.....+.....+|++|.|.+|+|++|+
T Consensus 99 ~~~~~~-----------------~~~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~ 159 (394)
T PLN02155 99 YRTFGN-----------------SGYWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIIS 159 (394)
T ss_pred cccccc-----------------cceeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEE
Confidence 544421 12378999999999999 99999999999764433334467889999999999999
Q ss_pred eeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceee
Q 009075 268 SLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQ 347 (544)
Q Consensus 268 ~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~n 347 (544)
+++++|||.|++++..|+||+|++++|.++.+++|+||||+.+|++|+|+||+|.+|||||+++++ ++|
T Consensus 160 gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s~n 228 (394)
T PLN02155 160 GVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRN 228 (394)
T ss_pred CeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------Cce
Confidence 999999999999999999999999999999889999999999999999999999999999999997 899
Q ss_pred EEEEEEEEeCCCCceEEEccc----ccCCeEEEEEEeeEEEcCCceEEEEeecC-CCCceeeEEEEeeEecccceeEEEE
Q 009075 348 LVIRRLTCISPYSATIALGSE----MSGGIQDVRAEDIKAINTESGVRIKTAVG-RGGYVKDIYVRGMTMHTMKWAFWMT 422 (544)
Q Consensus 348 I~I~n~~~~~~~~~gIsIGs~----~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g-~~g~v~nI~~~ni~~~~v~~~i~I~ 422 (544)
|+|+||+|.. +|||+|||+ ..++|+||+|+||+|.++.+|+|||||.+ ++|.|+||+|+||+|+++.+||.|+
T Consensus 229 I~I~n~~c~~--GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~ 306 (394)
T PLN02155 229 FLITKLACGP--GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIID 306 (394)
T ss_pred EEEEEEEEEC--CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEE
Confidence 9999999995 379999997 36789999999999999999999999975 6899999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeeccCCCCcc
Q 009075 423 GNYGSHADNHYDPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGV 501 (544)
Q Consensus 423 ~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~~~~v 501 (544)
+.|++.......+...+.|+||+|+||+++.. ..++.|.|+++.||++|+|+||+++.. ++.+..+.|.|+.|...++
T Consensus 307 q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~-~~~~~~~~C~n~~G~~~~~ 385 (394)
T PLN02155 307 QNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYN-KGTPATSFCFNAVGKSLGV 385 (394)
T ss_pred ecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEec-CCCccCcEEeccEeEEccc
Confidence 99975432211223346899999999999987 568899999999999999999999986 4556689999999987555
Q ss_pred -CCCCCCC
Q 009075 502 -TPPPCEL 508 (544)
Q Consensus 502 -~p~~c~~ 508 (544)
.|++|..
T Consensus 386 ~~p~~c~~ 393 (394)
T PLN02155 386 IQPTSCLN 393 (394)
T ss_pred CCcccccC
Confidence 7778964
No 3
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.8e-70 Score=574.93 Aligned_cols=359 Identities=25% Similarity=0.400 Sum_probs=312.3
Q ss_pred ccCCceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCCeEEeeeEEEe------eeeEEeeecCcEEE
Q 009075 110 ISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLI------SHFTLYLHKDAFLL 183 (544)
Q Consensus 110 ~~~~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Yl~g~i~l~------S~~tl~l~~ga~l~ 183 (544)
..+++.++||+||||+|||++|||+|||+||+++|. ..||++|+||+|+|+++++.|+ ++++| +|+
T Consensus 30 ~~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~--~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~ 101 (404)
T PLN02188 30 KGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACA--STGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLK 101 (404)
T ss_pred ccCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhc--cCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEE
Confidence 345678999999999999999999999999985432 2678899999999999999996 55554 889
Q ss_pred ecCCCCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhccc--CCCCCCCCeeEEEEee
Q 009075 184 ASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHK--GKLKYTRPYLMEFMYT 261 (544)
Q Consensus 184 ~~~~~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~--~~~~~~rp~~i~~~~~ 261 (544)
++.++++|+.. ..|+.+..++||+|+|. |+|||+|+.||+.... ......||++|.|.+|
T Consensus 102 ~s~d~~~y~~~-----------------~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~ 163 (404)
T PLN02188 102 AATDLSRYGSG-----------------NDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNM 163 (404)
T ss_pred cCCCHHHCCCc-----------------cceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEEEEEee
Confidence 99999888531 23677788999999996 9999999999974321 1234579999999999
Q ss_pred ecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccc
Q 009075 262 DNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAY 341 (544)
Q Consensus 262 ~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~ 341 (544)
+|++|++++++|||+|++++.+|+||+|++++|.++.+++|+||||+++|++|+|+||+|.+|||||++|++
T Consensus 164 ~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg-------- 235 (404)
T PLN02188 164 NNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG-------- 235 (404)
T ss_pred eeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC--------
Confidence 999999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred cCceeeEEEEEEEEeCCCCceEEEcc----cccCCeEEEEEEeeEEEcCCceEEEEeecC--CCCceeeEEEEeeEeccc
Q 009075 342 GMPTKQLVIRRLTCISPYSATIALGS----EMSGGIQDVRAEDIKAINTESGVRIKTAVG--RGGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 342 ~~~s~nI~I~n~~~~~~~~~gIsIGs----~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g--~~g~v~nI~~~ni~~~~v 415 (544)
++||+|+|+.|.. +|||+||| ++.++++||+|+||+|.++.+|+|||||.+ ++|.|+||+|+||+|+++
T Consensus 236 ---~~nI~I~n~~c~~--ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v 310 (404)
T PLN02188 236 ---NSQVTITRIRCGP--GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNV 310 (404)
T ss_pred ---CccEEEEEEEEcC--CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCc
Confidence 7899999999974 37999999 667889999999999999999999999986 358999999999999999
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeec
Q 009075 416 KWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADI 494 (544)
Q Consensus 416 ~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv 494 (544)
.+||.|++.|+++..+...+...+.|+||+|+||+++.. ..++.|.|+++.||++|+|+||+++...+.....|.|.|+
T Consensus 311 ~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv 390 (404)
T PLN02188 311 TNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENV 390 (404)
T ss_pred cceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcc
Confidence 999999999986543222223346899999999999886 5688999999999999999999999764444567999999
Q ss_pred cCCC-CccCCCCCC
Q 009075 495 GGMT-SGVTPPPCE 507 (544)
Q Consensus 495 ~g~~-~~v~p~~c~ 507 (544)
+|.. +.+.|+||.
T Consensus 391 ~g~~~g~~~p~~C~ 404 (404)
T PLN02188 391 RAKYIGTQIPPPCP 404 (404)
T ss_pred eeEEcccCcCCCCC
Confidence 9987 468888884
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=5.5e-70 Score=572.79 Aligned_cols=362 Identities=27% Similarity=0.490 Sum_probs=313.5
Q ss_pred CCceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCCe-EEeeeEEEeeee---EEeeecCcEEEecCC
Q 009075 112 CRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGK-WLTGSFNLISHF---TLYLHKDAFLLASQD 187 (544)
Q Consensus 112 ~~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~-Yl~g~i~l~S~~---tl~l~~ga~l~~~~~ 187 (544)
.++.++||++|||+|||++|||+|||+||++||. ..+|++|+||+|+ |+++++.|+++. .+.++.+++|+++..
T Consensus 19 ~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~--~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~ 96 (456)
T PLN03003 19 TSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCS--GTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK 96 (456)
T ss_pred eeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhh--ccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc
Confidence 3567899999999999999999999999999653 2678999999995 899999998643 245566788887543
Q ss_pred CCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEE
Q 009075 188 LNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQIS 267 (544)
Q Consensus 188 ~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~ 267 (544)
..|.. ....||.+.+++|++|+|. |+|||+|+.||... ..||+++.|.+|+|++|+
T Consensus 97 -~~w~~----------------~~~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~ 152 (456)
T PLN03003 97 -GNWKG----------------DKDQWILFTDIEGLVIEGD-GEINGQGSSWWEHK------GSRPTALKFRSCNNLRLS 152 (456)
T ss_pred -ccccC----------------CCcceEEEEcccceEEecc-ceEeCCchhhhhcc------cCCceEEEEEecCCcEEe
Confidence 33421 0135899999999999997 99999999999742 468999999999999999
Q ss_pred eeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceee
Q 009075 268 SLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQ 347 (544)
Q Consensus 268 ~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~n 347 (544)
|++++|||.|++++.+|++|+|++++|.++..++|+||||+.+|+||+|+||.|.+|||||+||+| ++|
T Consensus 153 gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~N 221 (456)
T PLN03003 153 GLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSN 221 (456)
T ss_pred CeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------Ccc
Confidence 999999999999999999999999999999889999999999999999999999999999999997 899
Q ss_pred EEEEEEEEeCCCCceEEEccccc----CCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccceeEEEEe
Q 009075 348 LVIRRLTCISPYSATIALGSEMS----GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTG 423 (544)
Q Consensus 348 I~I~n~~~~~~~~~gIsIGs~~~----g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~I~~ 423 (544)
|+|+||+|.. +|||+|||++. +.|+||+|+||+|.++.+|+|||||+|++|.|+||+|+||+|+++.+||.|++
T Consensus 222 I~I~n~~c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq 299 (456)
T PLN03003 222 IHISGIDCGP--GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQ 299 (456)
T ss_pred EEEEeeEEEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEc
Confidence 9999999984 37999999975 35999999999999999999999999989999999999999999999999999
Q ss_pred ecCCCC-CCCC-CCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEecC--CCCCcCeEeeeccCCC
Q 009075 424 NYGSHA-DNHY-DPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGMAA--KHKKVPWTCADIGGMT 498 (544)
Q Consensus 424 ~y~~~~-~~~~-~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~~~--~~~~~~~~c~nv~g~~ 498 (544)
.|++.. ...+ .+...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+++... ++....|.|.||.|..
T Consensus 300 ~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~ 379 (456)
T PLN03003 300 FYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGAS 379 (456)
T ss_pred ccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEecccccc
Confidence 998532 2212 223457999999999999876 5688999999999999999999999762 2335789999999988
Q ss_pred CccCC-CCCCCCCCC
Q 009075 499 SGVTP-PPCELLPDQ 512 (544)
Q Consensus 499 ~~v~p-~~c~~~~~~ 512 (544)
..+.| .||.++...
T Consensus 380 ~~~~~~~~C~~~~~~ 394 (456)
T PLN03003 380 TIAVPGLECLELSTD 394 (456)
T ss_pred CceECCCCccccCCC
Confidence 77655 489976543
No 5
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.4e-69 Score=571.82 Aligned_cols=353 Identities=28% Similarity=0.486 Sum_probs=312.3
Q ss_pred CceeEEEeecCccCCCccchHHHHHHHHHH-hhccCCCCCcEEEEcCC-eEEeeeEEEe----eeeEEeeecCcEEEecC
Q 009075 113 RAHSASITDFGGVGDGKTSNTKAFKDAINQ-LSQYSSDGGAQLYVPAG-KWLTGSFNLI----SHFTLYLHKDAFLLASQ 186 (544)
Q Consensus 113 ~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~-~~~~~~~gg~~v~iP~G-~Yl~g~i~l~----S~~tl~l~~ga~l~~~~ 186 (544)
++.++||+||||+|||++|||+|||+||++ |++ .++++|+||+| +|+++++.|+ ++++|++ +|+|+++.
T Consensus 64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~---~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~ 138 (431)
T PLN02218 64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSS---NGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ 138 (431)
T ss_pred CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhc---CCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence 578999999999999999999999999965 543 67889999999 6999999995 6778776 69999999
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCc-ccEEeCCCchhhhhcccC---CCCCCCCeeEEEEeee
Q 009075 187 DLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGD-NGTIDGQGALWWQQFHKG---KLKYTRPYLMEFMYTD 262 (544)
Q Consensus 187 ~~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~-~GtidG~G~~ww~~~~~~---~~~~~rp~~i~~~~~~ 262 (544)
++++|+. ...|+.+.+++||+|+|. .|+|||+|+.||...... .....||+++.|.+|+
T Consensus 139 d~~~y~~-----------------~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~ 201 (431)
T PLN02218 139 KRSDYKD-----------------ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSK 201 (431)
T ss_pred Chhhccc-----------------cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccc
Confidence 9988852 124789999999999994 399999999999754321 1234699999999999
Q ss_pred cEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCcccc
Q 009075 263 NIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYG 342 (544)
Q Consensus 263 nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~ 342 (544)
|++|+|++++|||+|++++.+|+||+|++++|.++.++||+||||+.+|+||+|+||+|.+|||||+||+|
T Consensus 202 nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg--------- 272 (431)
T PLN02218 202 SLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG--------- 272 (431)
T ss_pred cEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC---------
Confidence 99999999999999999999999999999999999899999999999999999999999999999999997
Q ss_pred CceeeEEEEEEEEeCCCCceEEEccccc----CCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEeccccee
Q 009075 343 MPTKQLVIRRLTCISPYSATIALGSEMS----GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWA 418 (544)
Q Consensus 343 ~~s~nI~I~n~~~~~~~~~gIsIGs~~~----g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~ 418 (544)
++||+|+||+|.. +|||+|||++. ++|+||+|+||+|.++.+|+|||||+|++|.|+||+|+|++|+++.+|
T Consensus 273 --s~nI~I~n~~c~~--GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 273 --SQNVQINDITCGP--GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred --CceEEEEeEEEEC--CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 8999999999974 37999999873 579999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeeccCC
Q 009075 419 FWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGM 497 (544)
Q Consensus 419 i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~ 497 (544)
|.|++.|+++..+... ...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+++.. ...|.||.+.
T Consensus 349 I~Idq~Y~~~~~~~~~-~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~ 421 (431)
T PLN02218 349 IIIDQDYCDKSKCTSQ-QSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVV 421 (431)
T ss_pred EEEEeeccCCCCCCCC-CCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEE
Confidence 9999999875533322 3346899999999999877 578899999999999999999999842 3579999998
Q ss_pred CCccCCCCCC
Q 009075 498 TSGVTPPPCE 507 (544)
Q Consensus 498 ~~~v~p~~c~ 507 (544)
..++.|+.|.
T Consensus 422 ~~~~~~p~c~ 431 (431)
T PLN02218 422 DKGAVSPQCN 431 (431)
T ss_pred EcccCCCCCC
Confidence 8776666884
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.8e-68 Score=556.95 Aligned_cols=348 Identities=25% Similarity=0.428 Sum_probs=308.6
Q ss_pred CceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCC--CcEEEEcCC-eEEeeeEEEee-----eeEEeeecCcEEEe
Q 009075 113 RAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDG--GAQLYVPAG-KWLTGSFNLIS-----HFTLYLHKDAFLLA 184 (544)
Q Consensus 113 ~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~g--g~~v~iP~G-~Yl~g~i~l~S-----~~tl~l~~ga~l~~ 184 (544)
.+.++||+||||+|||++|||+|||+||+++|. .+ +++|+||+| +|+++++.|++ +++|+++ |+|++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~---~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCG---GEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHcc---CCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 356899999999999999999999999998653 23 379999999 79999999995 6777765 89999
Q ss_pred cCCCCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecE
Q 009075 185 SQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNI 264 (544)
Q Consensus 185 ~~~~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv 264 (544)
+.++..|+.. ....|+.+.+++||+|+|. |+|||+|+.||. ++.|.+|+|+
T Consensus 118 ~~d~~~w~~~---------------~~~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv 168 (409)
T PLN03010 118 PSNIVAWSNP---------------KSQMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNL 168 (409)
T ss_pred cCChhhccCC---------------CCcceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCe
Confidence 9999888531 1134788999999999997 999999999996 5899999999
Q ss_pred EEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCc
Q 009075 265 QISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMP 344 (544)
Q Consensus 265 ~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~ 344 (544)
+|++++++|+|.|++++.+|++|+|++++|.++..++|+||||+.+|++|+|+||+|.+|||||++|+|
T Consensus 169 ~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg----------- 237 (409)
T PLN03010 169 TINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG----------- 237 (409)
T ss_pred EEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------
Confidence 999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred eeeEEEEEEEEeCCCCceEEEcccccCC----eEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccceeEE
Q 009075 345 TKQLVIRRLTCISPYSATIALGSEMSGG----IQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFW 420 (544)
Q Consensus 345 s~nI~I~n~~~~~~~~~gIsIGs~~~g~----v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~ 420 (544)
+.|+.|+++.|.. +|||+|||++.++ |+||+|+||+|.++.+|+|||+|+|++|.|+||+|+||+|+++++||.
T Consensus 238 s~ni~I~~~~C~~--gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~ 315 (409)
T PLN03010 238 SSNINITQINCGP--GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPII 315 (409)
T ss_pred CCcEEEEEEEeEC--cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEE
Confidence 7889999999974 3799999997644 999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeeccCCC-
Q 009075 421 MTGNYGSHADNHYDPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMT- 498 (544)
Q Consensus 421 I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~~- 498 (544)
|++.|+........+...+.|+||+|+||+++.. ..++.|.|++..||+||+|+||+++... +.+..+.|.|+.+..
T Consensus 316 I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~ 394 (409)
T PLN03010 316 IDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMEN-GEKPKVECQNVEGESS 394 (409)
T ss_pred EEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecC-CCccceEeeCcccccc
Confidence 9999986443223344557999999999999866 5789999999999999999999999863 335689999999976
Q ss_pred CccCCCCCCC
Q 009075 499 SGVTPPPCEL 508 (544)
Q Consensus 499 ~~v~p~~c~~ 508 (544)
+.+.|.+|.+
T Consensus 395 ~~~~~~~C~~ 404 (409)
T PLN03010 395 DTDLMRDCFK 404 (409)
T ss_pred CCCCCCcccc
Confidence 5577888984
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.8e-53 Score=439.65 Aligned_cols=309 Identities=36% Similarity=0.624 Sum_probs=261.1
Q ss_pred CCCcEEEEcCCeEEeeeEEEe----eeeEEeeecCcEEEecCCCCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceE
Q 009075 149 DGGAQLYVPAGKWLTGSFNLI----SHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVI 224 (544)
Q Consensus 149 ~gg~~v~iP~G~Yl~g~i~l~----S~~tl~l~~ga~l~~~~~~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~ 224 (544)
.++++|+||+|+|+++++.|+ ++.+++|+ +++.++.....++ . ..||.+.+++|++
T Consensus 4 ~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~~-----------------~-~~~i~~~~~~ni~ 63 (326)
T PF00295_consen 4 IGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEGP-----------------N-SALIYAENAENIT 63 (326)
T ss_dssp EEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTSE-------------------SEEEEEESEEEEE
T ss_pred CcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccCC-----------------c-cEEEEEEceEEEE
Confidence 567799999999999999999 45555553 4555542222211 1 4689999999999
Q ss_pred EeCcccEEeCCCchhhhhccc-CCCCCCCCeeEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCC
Q 009075 225 VTGDNGTIDGQGALWWQQFHK-GKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNT 303 (544)
Q Consensus 225 I~G~~GtidG~G~~ww~~~~~-~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~ 303 (544)
|+|. |+|||+|+.||+.... ......||+++.|.+|+|++|++++++|+|.|++++..|+||+|++++|.++...+|+
T Consensus 64 i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~Nt 142 (326)
T PF00295_consen 64 ITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNT 142 (326)
T ss_dssp CTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS-
T ss_pred ecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCc
Confidence 9997 9999999999986433 1345689999999999999999999999999999999999999999999998888999
Q ss_pred CCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccC----CeEEEEEE
Q 009075 304 DGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSG----GIQDVRAE 379 (544)
Q Consensus 304 DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g----~v~nI~v~ 379 (544)
||||+.+|++|+|+||+|.++||||++|++ ..||+|+||+|.++ +|++|||++.+ .++||+|+
T Consensus 143 DGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~g--hGisiGS~~~~~~~~~i~nV~~~ 209 (326)
T PF00295_consen 143 DGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSGG--HGISIGSEGSGGSQNDIRNVTFE 209 (326)
T ss_dssp -SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEESS--SEEEEEEESSSSE--EEEEEEEE
T ss_pred ceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEecc--ccceeeeccCCccccEEEeEEEE
Confidence 999999999999999999999999999996 56999999999864 68999999876 48999999
Q ss_pred eeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeE
Q 009075 380 DIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVS-MAA 458 (544)
Q Consensus 380 n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~-~a~ 458 (544)
||+|.++.+|++||++++++|.|+||+|+||+|+++.+||.|++.|...... ..+...+.|+||+|+||+++... .++
T Consensus 210 n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~-~~~~~~~~i~nI~~~nitg~~~~~~~i 288 (326)
T PF00295_consen 210 NCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPC-GKPPSGVSISNITFRNITGTSAGSSAI 288 (326)
T ss_dssp EEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEES-SCSSSSSEEEEEEEEEEEEEESTSEEE
T ss_pred EEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEecccccccc-CcccCCceEEEEEEEeeEEEeccceEE
Confidence 9999999999999999999999999999999999999999999999863221 22334468999999999999885 789
Q ss_pred EEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeeccC
Q 009075 459 RLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGG 496 (544)
Q Consensus 459 ~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g 496 (544)
.|.|.++.||++|+|+||+++. + ...+.|.|+..
T Consensus 289 ~i~~~~~~~~~ni~f~nv~i~~-g---~~~~~c~nv~~ 322 (326)
T PF00295_consen 289 SIDCSPGSPCSNITFENVNITG-G---KKPAQCKNVPS 322 (326)
T ss_dssp EEE-BTTSSEEEEEEEEEEEES-S---BSESEEBSCCT
T ss_pred EEEECCcCcEEeEEEEeEEEEc-C---CcCeEEECCCC
Confidence 9999999999999999999997 2 56789998875
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-47 Score=408.84 Aligned_cols=303 Identities=37% Similarity=0.585 Sum_probs=259.3
Q ss_pred cCCceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCCeEEeeeEEEeeeeEEeeecCcEEEecCCCCC
Q 009075 111 SCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNE 190 (544)
Q Consensus 111 ~~~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Yl~g~i~l~S~~tl~l~~ga~l~~~~~~~~ 190 (544)
.+....++|++|||+|||.+++++|||+||++|++ .+|++|+||+|+|+.++|+|||+++|++++|++|+++.++++
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~---a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~ 153 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS---AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKD 153 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhh---hcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhh
Confidence 34567899999999999999999999999999976 799999999999999999999999999999999999999999
Q ss_pred CCC--------CCC----CC-----CCCCccccCCCcceeeEEEeceeceE-EeCcccEEeCCC----chhhhhcc--cC
Q 009075 191 WPV--------IKP----LP-----SYGRGRDAAAGRYTSLIFGTNLTDVI-VTGDNGTIDGQG----ALWWQQFH--KG 246 (544)
Q Consensus 191 ~~~--------~~~----l~-----s~g~g~~~~~~~~~~~i~~~~~~nV~-I~G~~GtidG~G----~~ww~~~~--~~ 246 (544)
|+. ..+ .+ .+++| +..+ +..++.....+|.. |.|. |+++|++ ..||.... ..
T Consensus 154 y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g--~~d~-~~~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~ 229 (542)
T COG5434 154 YPSFTSRFNGNSGPYVYATDSDNAMISGEG--LADG-KADLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVET 229 (542)
T ss_pred ccccccccccccCcceeeecccCceeeeec--cccc-CcccceeccCCceEEEecc-ceecCccccchhhhhhcccchhh
Confidence 984 111 00 11222 2222 23344445556666 8896 9999974 22776543 11
Q ss_pred CCCC--CCCeeEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecC
Q 009075 247 KLKY--TRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSG 324 (544)
Q Consensus 247 ~~~~--~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~g 324 (544)
+... .||..+.+..|.||+++|++|.+++.|++++..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.+|
T Consensus 230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg 308 (542)
T COG5434 230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308 (542)
T ss_pred cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence 2222 69999999999999999999999999999999999999999999998755 99999999999999999999999
Q ss_pred CceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCCCceee
Q 009075 325 DDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKD 404 (544)
Q Consensus 325 DD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~n 404 (544)
||||++|+|....+.....|++||+|+||++..++ .++.+|||+.++++||++|||.|.++.+|+||||..+++|.++|
T Consensus 309 DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~gh-G~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~n 387 (542)
T COG5434 309 DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGH-GGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRN 387 (542)
T ss_pred CceEEeecccCCcccccccccccEEEecceecccc-cceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEE
Confidence 99999999987776667778999999999999888 58999999999999999999999999999999999999999999
Q ss_pred EEEEeeEecccceeEEEE
Q 009075 405 IYVRGMTMHTMKWAFWMT 422 (544)
Q Consensus 405 I~~~ni~~~~v~~~i~I~ 422 (544)
|+|++++|.++..+..|.
T Consensus 388 I~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 388 IVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEecccccCcccceeee
Confidence 999999999986555554
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.93 E-value=2.6e-25 Score=230.42 Aligned_cols=226 Identities=18% Similarity=0.199 Sum_probs=163.4
Q ss_pred ceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCCeEEeeeEEEeeeeEEeeecCcEEEecCCCCCCCC
Q 009075 114 AHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPV 193 (544)
Q Consensus 114 ~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Yl~g~i~l~S~~tl~l~~ga~l~~~~~~~~~~~ 193 (544)
...+|+++|||++||++|+|+|||+||++|. .++++|++|+|+|+.+++.|+++++|..+++++.+.-.
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa----~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vId------- 103 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEAA----RAQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFT------- 103 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHhh----cCCCEEEECCCceecccEEECCCcEEEecCCcEEEEEc-------
Confidence 3458999999999999999999999999985 46789999999999999999999999999888732110
Q ss_pred CCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEEeeEEee
Q 009075 194 IKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLN 273 (544)
Q Consensus 194 ~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~n 273 (544)
+ . ..++...+.+||+|+| -+|+|+|..| ..++.+|++..|++++|++++|.+
T Consensus 104 -------G--------~-~~lIiai~A~nVTIsG--LtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~g 155 (455)
T TIGR03808 104 -------G--------G-PSLLSSEGADGIGLSG--LTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITG 155 (455)
T ss_pred -------C--------C-ceEEEEecCCCeEEEe--eEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEc
Confidence 0 0 2467778999999999 5999999754 257889999999999999999999
Q ss_pred CCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEec-CCceeeccC--------------------
Q 009075 274 SPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVS-GDDCVAVKS-------------------- 332 (544)
Q Consensus 274 s~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gDD~Iai~s-------------------- 332 (544)
+..|++.+..|+ ..|.+.+|... ...+|+++.+++++|++++|.. .|++|.+..
T Consensus 156 sg~FGI~L~~~~-~~I~~N~I~g~----~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a 230 (455)
T TIGR03808 156 SGGNGIWLETVS-GDISGNTITQI----AVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKA 230 (455)
T ss_pred CCcceEEEEcCc-ceEecceEecc----ccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccc
Confidence 999999999999 56666666653 2344777777777777777665 555555441
Q ss_pred ---CCCccCccc-cCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCc
Q 009075 333 ---GWDEYGIAY-GMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTES 388 (544)
Q Consensus 333 ---g~~~~G~~~-~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~ 388 (544)
|..++|... -..+.+++|+++++..+.-+||.+-+ .+|+.|++++|.+...
T Consensus 231 ~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns-----ss~~~i~~N~~~~~R~ 285 (455)
T TIGR03808 231 GPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS-----ASNIQITGNSVSDVRE 285 (455)
T ss_pred cCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEc-----ccCcEEECcEeeeeee
Confidence 112333211 12356666777666654324666543 3345555555554443
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.85 E-value=3e-20 Score=181.31 Aligned_cols=220 Identities=22% Similarity=0.322 Sum_probs=124.9
Q ss_pred eEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCCeEEee-eEEEeeeeEEeeecC-cEEEecC-CCCCCC
Q 009075 116 SASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTG-SFNLISHFTLYLHKD-AFLLASQ-DLNEWP 192 (544)
Q Consensus 116 ~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Yl~g-~i~l~S~~tl~l~~g-a~l~~~~-~~~~~~ 192 (544)
.+||++|||+|||.+|||+|||+||+++.. .++++|+||+|+|++. ++.++++++|..+.+ .+++... ....+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~---~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~ 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA---AGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCS---TTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhccc---CCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc
Confidence 479999999999999999999999966654 7899999999999887 599999999999765 3444322 211111
Q ss_pred CCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEEeeEEe
Q 009075 193 VIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLL 272 (544)
Q Consensus 193 ~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ 272 (544)
... +... .......+. ..++|++|.| ++... ......+.+..+++++|+++++.
T Consensus 78 ~~~-------~~~~-~~~~~~~~~-~~i~nl~i~~-------~~~~~----------~~~~~~i~~~~~~~~~i~nv~~~ 131 (225)
T PF12708_consen 78 VVP-------GIGV-FDSGNSNIG-IQIRNLTIDG-------NGIDP----------NNNNNGIRFNSSQNVSISNVRIE 131 (225)
T ss_dssp CEE-------EEEE-CCSCSCCEE-EEEEEEEEEE-------TCGCE-----------SCEEEEEETTEEEEEEEEEEEE
T ss_pred ccc-------ceee-eecCCCCce-EEEEeeEEEc-------ccccC----------CCCceEEEEEeCCeEEEEeEEEE
Confidence 000 0000 000000000 1144555555 33211 01145788888999999999999
Q ss_pred eCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCC-CcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEE
Q 009075 273 NSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPD-SCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIR 351 (544)
Q Consensus 273 ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~-~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~ 351 (544)
++...++.+..++...+.+..... ++.+. ++.++.+.++.+..+++++.. + .+++.|+
T Consensus 132 ~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~--~-----------~~~~~i~ 190 (225)
T PF12708_consen 132 NSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL--G-----------NNNITIS 190 (225)
T ss_dssp S-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC--E-----------EEEEEEE
T ss_pred ccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe--e-----------cceEEEE
Confidence 887777777755554444332220 12221 224455667766666665211 1 3567777
Q ss_pred EEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceE
Q 009075 352 RLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGV 390 (544)
Q Consensus 352 n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi 390 (544)
||++......||.+... .+++|+|++|.++..|+
T Consensus 191 n~~~~~~~~~gi~i~~~-----~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 191 NNTFEGNCGNGINIEGG-----SNIIISNNTIENCDDGI 224 (225)
T ss_dssp CEEEESSSSESEEEEEC-----SEEEEEEEEEESSSEEE
T ss_pred eEEECCccceeEEEECC-----eEEEEEeEEEECCccCc
Confidence 77776533356666432 23666666666665554
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.83 E-value=4.6e-19 Score=187.59 Aligned_cols=208 Identities=16% Similarity=0.209 Sum_probs=165.6
Q ss_pred eeEEEEeeecEEEEeeEEeeCCC---C--------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEe
Q 009075 254 YLMEFMYTDNIQISSLTLLNSPS---W--------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIV 322 (544)
Q Consensus 254 ~~i~~~~~~nv~I~~v~i~ns~~---~--------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~ 322 (544)
..|.|.+.+|+.|.|--..+..+ | .+.+..|+|++|+++++.+++ .-.+++..|++|+|++..|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp----~w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP----MAHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC----cEEEEEeccccEEEEEEEEe
Confidence 47999999999999865555432 3 477889999999999999865 23488889999999999998
Q ss_pred cC-----CceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecC
Q 009075 323 SG-----DDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVG 397 (544)
Q Consensus 323 ~g-----DD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g 397 (544)
+. -|+|.+.+ ++||+|+||++.+++ ++|+|++ +.+||+|+||++.. .+|+.|.+...
T Consensus 181 ap~~spNTDGIDi~~------------S~nV~I~n~~I~tGD-DCIaiks----gs~NI~I~n~~c~~-GHGISIGSlg~ 242 (456)
T PLN03003 181 APESSPNTDGIDVGA------------SSNVVIQDCIIATGD-DCIAINS----GTSNIHISGIDCGP-GHGISIGSLGK 242 (456)
T ss_pred CCCCCCCCCcEeecC------------cceEEEEecEEecCC-CeEEeCC----CCccEEEEeeEEEC-CCCeEEeeccC
Confidence 73 35555543 899999999999998 9999997 46799999999976 48999998753
Q ss_pred C--CCceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEccC-----------
Q 009075 398 R--GGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGIS----------- 464 (544)
Q Consensus 398 ~--~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~~----------- 464 (544)
. .+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||.+.++..|+.|....
T Consensus 243 ~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~ 312 (456)
T PLN03003 243 DGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDR 312 (456)
T ss_pred CCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccC
Confidence 2 2579999999999999999999998643 1258999999999999998888774321
Q ss_pred ---CCCeecEEEEeEEEEecCCCCCcCeEeeec
Q 009075 465 ---GDPFTGICIANATIGMAAKHKKVPWTCADI 494 (544)
Q Consensus 465 ---~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv 494 (544)
...++||+|+||+.+.+ ......+.|+..
T Consensus 313 ~~s~v~IsnI~f~NI~GTs~-~~~ai~l~Cs~~ 344 (456)
T PLN03003 313 KSSAVEVSKVVFSNFIGTSK-SEYGVDFRCSER 344 (456)
T ss_pred CCCCcEEEeEEEEeEEEEeC-ccceEEEEeCCC
Confidence 13589999999999865 223344666543
No 12
>PLN02155 polygalacturonase
Probab=99.82 E-value=2e-18 Score=181.26 Aligned_cols=245 Identities=13% Similarity=0.200 Sum_probs=178.0
Q ss_pred eEEEEeeecEEEEeeEEeeCCC---C--------------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEE
Q 009075 255 LMEFMYTDNIQISSLTLLNSPS---W--------------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIE 317 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~---~--------------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~ 317 (544)
.+.+.+.+|+.|.+=+| +..+ | .+.+..|++++|+++++.+++ ..-+++..|++|+|+
T Consensus 108 wi~~~~~~~i~i~GG~i-DGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp----~w~i~~~~~~nv~i~ 182 (394)
T PLN02155 108 WILFNKVNRFSLVGGTF-DARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ----VSHMTLNGCTNVVVR 182 (394)
T ss_pred eEEEECcCCCEEEccEE-ecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC----CeEEEEECeeeEEEE
Confidence 57888888888887433 3221 1 367889999999999999865 334788899999999
Q ss_pred ccEEecC-----CceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEE
Q 009075 318 DCYIVSG-----DDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRI 392 (544)
Q Consensus 318 n~~i~~g-----DD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~I 392 (544)
+..|.+. -|+|.+.+ ++||+|+||++..++ ++|+|++ +.+||+|+||++... +|+.|
T Consensus 183 ~v~I~~p~~~~NtDGidi~~------------s~nV~I~~~~I~~gD-DcIaik~----gs~nI~I~n~~c~~G-hGisI 244 (394)
T PLN02155 183 NVKLVAPGNSPNTDGFHVQF------------STGVTFTGSTVQTGD-DCVAIGP----GTRNFLITKLACGPG-HGVSI 244 (394)
T ss_pred EEEEECCCCCCCCCcccccc------------ceeEEEEeeEEecCC-ceEEcCC----CCceEEEEEEEEECC-ceEEe
Confidence 9999872 25555543 899999999999998 8999987 467999999999864 89999
Q ss_pred EeecC--CCCceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEccC------
Q 009075 393 KTAVG--RGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGIS------ 464 (544)
Q Consensus 393 kt~~g--~~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~~------ 464 (544)
.+... ..+.|+||+++|+++.+..++++|+.+... +.+.++||+|+||++.++..|+.|....
T Consensus 245 GS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~---------~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~ 315 (394)
T PLN02155 245 GSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP---------STGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEG 315 (394)
T ss_pred ccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC---------CCEEEEEEEEEeEEEcCccccEEEEecccCCCCC
Confidence 98632 257899999999999999999999975321 2358999999999999998888774211
Q ss_pred ------CCCeecEEEEeEEEEecCCCCCcCeEeeeccCC------CCccCCCCCCCCCCCCCcCCccCCCCCCCCcccee
Q 009075 465 ------GDPFTGICIANATIGMAAKHKKVPWTCADIGGM------TSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMV 532 (544)
Q Consensus 465 ------~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~------~~~v~p~~c~~~~~~~~~~~~~c~~~~~~~~~~~~ 532 (544)
...++||+|+||+.+.+. .......|+..... ...+.+. + .......|++.......-.+
T Consensus 316 ~~~~~s~v~i~~It~~ni~gt~~~-~~a~~l~c~~~~pc~~I~l~nv~i~~~------~-~~~~~~~C~n~~G~~~~~~~ 387 (394)
T PLN02155 316 CPNEYSGVKISQVTYKNIQGTSAT-QEAMKLVCSKSSPCTGITLQDIKLTYN------K-GTPATSFCFNAVGKSLGVIQ 387 (394)
T ss_pred CcCCCCCeEEEEEEEEeeEEEecC-CceEEEEeCCCCCEEEEEEEeeEEEec------C-CCccCcEEeccEeEEcccCC
Confidence 135899999999998752 22334555432221 1112111 1 11123568888776555555
Q ss_pred eeeeeEee
Q 009075 533 EMKKCTYR 540 (544)
Q Consensus 533 ~~~~~~~~ 540 (544)
++ .|+++
T Consensus 388 p~-~c~~~ 394 (394)
T PLN02155 388 PT-SCLNR 394 (394)
T ss_pred cc-cccCC
Confidence 55 78653
No 13
>PLN02793 Probable polygalacturonase
Probab=99.82 E-value=7.9e-19 Score=187.02 Aligned_cols=246 Identities=14% Similarity=0.179 Sum_probs=181.6
Q ss_pred eeEEEEeeecEEEEeeEEeeCCC---C-----------------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCccc
Q 009075 254 YLMEFMYTDNIQISSLTLLNSPS---W-----------------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTN 313 (544)
Q Consensus 254 ~~i~~~~~~nv~I~~v~i~ns~~---~-----------------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~n 313 (544)
..|.+.+.+|++|.|--..+..+ | .+.+..|+|++|+++++.+++ ..-+++..|++
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp----~~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ----QMHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC----CeEEEEEccCc
Confidence 47888899999998855555322 1 356778999999999999865 33478889999
Q ss_pred EEEEccEEec-----CCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCc
Q 009075 314 TRIEDCYIVS-----GDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTES 388 (544)
Q Consensus 314 V~I~n~~i~~-----gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~ 388 (544)
|+|++..|.+ .-|+|.+.+ ++||+|+||++..++ ++|+|++ +.+||+|+||++... +
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~------------s~nV~I~n~~I~~gD-DcIaik~----~s~nI~I~n~~c~~G-h 272 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISA------------SRGVVIKDSIVRTGD-DCISIVG----NSSRIKIRNIACGPG-H 272 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeec------------cceEEEEeCEEeCCC-CeEEecC----CcCCEEEEEeEEeCC-c
Confidence 9999999986 345666544 899999999999998 8999986 467999999999665 8
Q ss_pred eEEEEeecC--CCCceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEccC--
Q 009075 389 GVRIKTAVG--RGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGIS-- 464 (544)
Q Consensus 389 Gi~Ikt~~g--~~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~~-- 464 (544)
|+.|.+... ..+.|+||+|+|+++.+..++++|+.+.+. .+.++||+|+||++.++..|+.|....
T Consensus 273 GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~----------~G~v~nItf~ni~m~nv~~pI~I~q~Y~~ 342 (443)
T PLN02793 273 GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG----------SGNASKITFQNIFMENVSNPIIIDQYYCD 342 (443)
T ss_pred cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCC----------CEEEEEEEEEeEEEecCCceEEEEeeecC
Confidence 999998632 236799999999999999999999976431 258999999999999998888875421
Q ss_pred ----------CCCeecEEEEeEEEEecCCCCCcCeEeeeccCCC------CccCCCCCCCCCCCCCcCCccCCCCCCCCc
Q 009075 465 ----------GDPFTGICIANATIGMAAKHKKVPWTCADIGGMT------SGVTPPPCELLPDQGPEKIRACDFPTESLP 528 (544)
Q Consensus 465 ----------~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~~------~~v~p~~c~~~~~~~~~~~~~c~~~~~~~~ 528 (544)
...++||+|+||+.+.+. .....+.|+...... -.+.+ +. .......|++......
T Consensus 343 ~~~~~~~~ts~v~I~nI~~~nI~Gt~~~-~~ai~l~cs~~~pc~ni~l~nI~l~~------~~-g~~~~~~C~n~~g~~~ 414 (443)
T PLN02793 343 SRKPCANQTSAVKVENISFVHIKGTSAT-EEAIKFACSDSSPCEGLYLEDVQLLS------ST-GDFTESFCWEAYGSSS 414 (443)
T ss_pred CCCCCCCCCCCeEEEeEEEEEEEEEEcc-cccEEEEeCCCCCEeeEEEEeeEEEe------cC-CCCCCcEEEccEEeEC
Confidence 124899999999988742 223445665322211 11111 11 1112356888887777
Q ss_pred cceeeeeeeEee
Q 009075 529 IDMVEMKKCTYR 540 (544)
Q Consensus 529 ~~~~~~~~~~~~ 540 (544)
...++. +|+..
T Consensus 415 ~~~~p~-~C~~~ 425 (443)
T PLN02793 415 GQVYPP-PCFSD 425 (443)
T ss_pred CeEcCC-ccccC
Confidence 666665 78744
No 14
>PLN03010 polygalacturonase
Probab=99.82 E-value=1.1e-18 Score=183.67 Aligned_cols=250 Identities=14% Similarity=0.179 Sum_probs=180.3
Q ss_pred eeEEEEeeecEEEEeeEEeeCCC---C-CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecC-----
Q 009075 254 YLMEFMYTDNIQISSLTLLNSPS---W-NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSG----- 324 (544)
Q Consensus 254 ~~i~~~~~~nv~I~~v~i~ns~~---~-~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~g----- 324 (544)
..+.|.+.+|+.|.|--..+..+ | .+.+..|+|++|+++++.+++ ..-+++..|++|+|++..|.+-
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp----~~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSP----KNHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCC----ceEEEEeccccEEEEEEEEeCCCCCCC
Confidence 35788999999999866666533 4 478899999999999999865 3347888999999999999872
Q ss_pred CceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCC--CCce
Q 009075 325 DDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGR--GGYV 402 (544)
Q Consensus 325 DD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~--~g~v 402 (544)
-|+|.+.+ ++||+|+||++..++ ++|+|++. ..++.|+++.+.. .+|+.|.+.... ...|
T Consensus 207 TDGiDi~~------------s~nV~I~n~~I~~gD-DcIaiksg----s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 207 TDGIDISY------------STNINIFDSTIQTGD-DCIAINSG----SSNINITQINCGP-GHGISVGSLGADGANAKV 268 (409)
T ss_pred CCceeeec------------cceEEEEeeEEecCC-CeEEecCC----CCcEEEEEEEeEC-cCCEEEccCCCCCCCCee
Confidence 34554433 899999999999998 99999984 3478888888865 489999986432 2569
Q ss_pred eeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEccC------------CCCeec
Q 009075 403 KDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGIS------------GDPFTG 470 (544)
Q Consensus 403 ~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~~------------~~~i~~ 470 (544)
+||+|+|++|.+..++++|+.+.+. .+.++||+|+||++.++..|+.|.... ...++|
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G~----------~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isd 338 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQGG----------QGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISN 338 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecCC----------CEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEe
Confidence 9999999999999999999986431 258999999999999998888875321 125899
Q ss_pred EEEEeEEEEecCCCCCcCeEeeeccCCCCccCCCCCCCCCCCCCcCCccCCCCCCCCccceeeeeeeE
Q 009075 471 ICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCT 538 (544)
Q Consensus 471 I~~~NV~~~~~~~~~~~~~~c~nv~g~~~~v~p~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 538 (544)
|+|+||+.+.+ ......+.|+.....+....-.--...++ +......|.+.........+++ .|+
T Consensus 339 i~~~ni~GT~~-~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~~~~~~~-~C~ 403 (409)
T PLN03010 339 VKYVGFRGTTS-NENAITLKCSAITHCKDVVMDDIDVTMEN-GEKPKVECQNVEGESSDTDLMR-DCF 403 (409)
T ss_pred EEEEeeEEEeC-CCccEEEEeCCCCCEeceEEEEEEEEecC-CCccceEeeCccccccCCCCCC-ccc
Confidence 99999999875 33455677754333221100000000111 1112346877766665555555 676
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.81 E-value=2.8e-18 Score=180.86 Aligned_cols=251 Identities=16% Similarity=0.177 Sum_probs=176.7
Q ss_pred eEEEEeeecEEEEeeEEeeCCC---C----------------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEE
Q 009075 255 LMEFMYTDNIQISSLTLLNSPS---W----------------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTR 315 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~---~----------------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~ 315 (544)
.+.+.+.+|++|.+--..+..+ | .+.+..|+|++|+++++.+++ ...+++..|++|+
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp----~w~i~~~~~~~v~ 190 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK----FFHIALVECRNFK 190 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC----CeEEEEEccccEE
Confidence 4667778888888755554332 2 246779999999999999965 3458888999999
Q ss_pred EEccEEec-----CCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceE
Q 009075 316 IEDCYIVS-----GDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGV 390 (544)
Q Consensus 316 I~n~~i~~-----gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi 390 (544)
|++..|.+ .-|+|.+.+ ++||+|+||++..++ ++|+|++. .+||+|+|+++... +|+
T Consensus 191 i~~v~I~~~~~spNtDGidi~~------------s~nV~I~n~~I~~GD-DcIaiksg----~~nI~I~n~~c~~g-hGi 252 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIER------------SSGVYISDSRIGTGD-DCISIGQG----NSQVTITRIRCGPG-HGI 252 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeC------------cccEEEEeeEEeCCC-cEEEEccC----CccEEEEEEEEcCC-CcE
Confidence 99999986 345565544 899999999999998 89999873 46999999999654 899
Q ss_pred EEEeecC--CCCceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEcc-----
Q 009075 391 RIKTAVG--RGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGI----- 463 (544)
Q Consensus 391 ~Ikt~~g--~~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~----- 463 (544)
.|.+... ..+.|+||+|+|+++.+..++++|+.+.+.. ..+.++||+|+||++.++..|+.|...
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~--------~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~ 324 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSP--------GKSAATNMTFENIVMNNVTNPIIIDQKYCPFY 324 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCC--------CceEEEEEEEEeEEecCccceEEEEccccCCC
Confidence 9988431 2367999999999999999999999754311 125899999999999999888877531
Q ss_pred -------CCCCeecEEEEeEEEEecCCCCCcCeEeeeccCCCCccCCCCCCCCCCCCCcCCccCCCCCCCCccceeeeee
Q 009075 464 -------SGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKK 536 (544)
Q Consensus 464 -------~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~~~~v~p~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 536 (544)
....++||+|+||+.+.+ ......+.|+..........-.--...++........|.+.........+++ .
T Consensus 325 ~~~~~~~s~v~I~nIt~~nI~gt~~-~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~-~ 402 (404)
T PLN02188 325 SCESKYPSGVTLSDIYFKNIRGTSS-SQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPP-P 402 (404)
T ss_pred CCCcCCCCCcEEEeEEEEEEEEEec-CceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCC-C
Confidence 124589999999999874 2223345564322211100000000011111111256888877777666665 5
Q ss_pred e
Q 009075 537 C 537 (544)
Q Consensus 537 ~ 537 (544)
|
T Consensus 403 C 403 (404)
T PLN02188 403 C 403 (404)
T ss_pred C
Confidence 6
No 16
>PLN02218 polygalacturonase ADPG
Probab=99.80 E-value=4.3e-18 Score=180.59 Aligned_cols=206 Identities=15% Similarity=0.255 Sum_probs=161.6
Q ss_pred eeEEEEeeecEEEEee--EEeeCCC---C-----------------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCc
Q 009075 254 YLMEFMYTDNIQISSL--TLLNSPS---W-----------------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSC 311 (544)
Q Consensus 254 ~~i~~~~~~nv~I~~v--~i~ns~~---~-----------------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s 311 (544)
..|.+.+.+|++|++- -..|..+ | .+.+..|+|++|+++++.+++ ..-+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp----~w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQ----QIQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCC----CEEEEEEce
Confidence 3588889999999882 2222211 2 356789999999999999865 334888899
Q ss_pred ccEEEEccEEec-----CCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcC
Q 009075 312 TNTRIEDCYIVS-----GDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINT 386 (544)
Q Consensus 312 ~nV~I~n~~i~~-----gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~ 386 (544)
++|+|+|.+|.+ .-|+|.+.+ ++||+|+||++..++ ++|+|++ +.+||+|+||++..
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s------------s~nV~I~n~~I~tGD-DcIaIks----gs~nI~I~n~~c~~- 285 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN------------TQNIRVSNSIIGTGD-DCISIES----GSQNVQINDITCGP- 285 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc------------cceEEEEccEEecCC-ceEEecC----CCceEEEEeEEEEC-
Confidence 999999999986 345665544 899999999999998 9999997 46899999999965
Q ss_pred CceEEEEeecCC--CCceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEccC
Q 009075 387 ESGVRIKTAVGR--GGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGIS 464 (544)
Q Consensus 387 ~~Gi~Ikt~~g~--~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~~ 464 (544)
.+|+.|.+.... .+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++.++..|+.|....
T Consensus 286 GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~pI~Idq~Y 355 (431)
T PLN02218 286 GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKNPIIIDQDY 355 (431)
T ss_pred CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccccEEEEeec
Confidence 589999986532 3689999999999999999999997532 2358999999999999998888775321
Q ss_pred -----------CCCeecEEEEeEEEEecCCCCCcCeEee
Q 009075 465 -----------GDPFTGICIANATIGMAAKHKKVPWTCA 492 (544)
Q Consensus 465 -----------~~~i~~I~~~NV~~~~~~~~~~~~~~c~ 492 (544)
...++||+|+||+.+.+. .......|+
T Consensus 356 ~~~~~~~~~~s~v~I~nI~~~NI~gtsa~-~~ai~l~cs 393 (431)
T PLN02218 356 CDKSKCTSQQSAVQVKNVVYRNISGTSAS-DVAITFNCS 393 (431)
T ss_pred cCCCCCCCCCCCeEEEEEEEEeEEEEecC-CcEEEEEEC
Confidence 234899999999998752 223345553
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.77 E-value=9.1e-17 Score=168.28 Aligned_cols=270 Identities=16% Similarity=0.253 Sum_probs=158.9
Q ss_pred CcEEEEcCCeEEeee---EEEeeee-EEeeecCcEEEecCCCCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEe
Q 009075 151 GAQLYVPAGKWLTGS---FNLISHF-TLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVT 226 (544)
Q Consensus 151 g~~v~iP~G~Yl~g~---i~l~S~~-tl~l~~ga~l~~~~~~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~ 226 (544)
..+|||+||+|.++. +.|++++ +++|++||.+++. +.+....+|+.|.
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA----------------------------f~~~~~~~nv~i~ 283 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA----------------------------FEYTDTQQNVKIT 283 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-----------------------------EEE---SSEEEEE
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE----------------------------EEEccCCceEEEE
Confidence 469999999999874 8999885 8999999998753 2223688999999
Q ss_pred CcccEEeCCCchhhhhcccCCC--------CCCCCeeEE---EEeeecEEEEeeEEeeCCCCCccccCCe----eEEEEe
Q 009075 227 GDNGTIDGQGALWWQQFHKGKL--------KYTRPYLME---FMYTDNIQISSLTLLNSPSWNVHPVYSS----NILVQG 291 (544)
Q Consensus 227 G~~GtidG~G~~ww~~~~~~~~--------~~~rp~~i~---~~~~~nv~I~~v~i~ns~~~~i~~~~~~----nv~I~~ 291 (544)
|. |+++|....|......... ....-+++. ...+.++.++|++|.++|+|.+.+.+.. +..|+|
T Consensus 284 G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~n 362 (582)
T PF03718_consen 284 GR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISN 362 (582)
T ss_dssp SS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEE
T ss_pred ee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeec
Confidence 97 9999988766322111100 011123444 4566799999999999999999998544 589999
Q ss_pred eEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC-CceEEEccccc
Q 009075 292 ITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY-SATIALGSEMS 370 (544)
Q Consensus 292 ~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-~~gIsIGs~~~ 370 (544)
.++.... -.|+|||.+. ++-+|+||++++.||+|-+.. +++.|+||+++..+ +.-|.+|.. +
T Consensus 363 yKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh-------------S~v~v~~~ViWk~~Ngpiiq~GW~-p 425 (582)
T PF03718_consen 363 YKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLYH-------------SNVSVSNTVIWKNENGPIIQWGWT-P 425 (582)
T ss_dssp EEEE----CTT----B----TT-EEEEEEEEESS-SEE--S-------------TTEEEEEEEEEE-SSS-SEE--CS--
T ss_pred eeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhheee-------------cCcceeeeEEEecCCCCeEEeecc-c
Confidence 9999754 4799999985 777889999999999986542 68999999999755 234667765 4
Q ss_pred CCeEEEEEEeeEEEcCC---------ceEEEEeecC----C------CCceeeEEEEeeEeccc-ceeEEEEeecCCCCC
Q 009075 371 GGIQDVRAEDIKAINTE---------SGVRIKTAVG----R------GGYVKDIYVRGMTMHTM-KWAFWMTGNYGSHAD 430 (544)
Q Consensus 371 g~v~nI~v~n~~~~~~~---------~Gi~Ikt~~g----~------~g~v~nI~~~ni~~~~v-~~~i~I~~~y~~~~~ 430 (544)
..+++|+|+|+.+..+. .+|.-.+..- . .-.|++++|+|+++++. ...++|.+.
T Consensus 426 r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl------ 499 (582)
T PF03718_consen 426 RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL------ 499 (582)
T ss_dssp --EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S------
T ss_pred cccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec------
Confidence 46999999999998762 3443332111 1 12479999999999996 556677642
Q ss_pred CCCCCCCCCeEEeEEEEEEEEe-----ccCeeEE----EEcc---CCCCeecEEEEeEEEEe
Q 009075 431 NHYDPKALPVIQGINYRDIVAD-----NVSMAAR----LEGI---SGDPFTGICIANATIGM 480 (544)
Q Consensus 431 ~~~~~~~~~~I~nItf~NI~~t-----~~~~a~~----i~g~---~~~~i~~I~~~NV~~~~ 480 (544)
...+|+.++|+... ....... ..+. ......+|.|+|.++..
T Consensus 500 --------qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 500 --------QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp --------EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETT
T ss_pred --------CCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECC
Confidence 13445555555554 1111111 1111 23458999999999965
No 18
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.76 E-value=4.6e-17 Score=168.58 Aligned_cols=198 Identities=19% Similarity=0.221 Sum_probs=155.9
Q ss_pred CeeEEEEeeecEEEEeeEEeeCCC------------------CCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccE
Q 009075 253 PYLMEFMYTDNIQISSLTLLNSPS------------------WNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNT 314 (544)
Q Consensus 253 p~~i~~~~~~nv~I~~v~i~ns~~------------------~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV 314 (544)
..+|.+.+++|+.|.|--..+..+ ..+.+..|++++|+++++.+++ ...+++..|++|
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp----~w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP----FWHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S----SESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC----eeEEEEEccCCe
Confidence 457889999999998733333211 2366788999999999999865 234788899999
Q ss_pred EEEccEEec-----CCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCce
Q 009075 315 RIEDCYIVS-----GDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESG 389 (544)
Q Consensus 315 ~I~n~~i~~-----gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~G 389 (544)
+|++..|.+ ..|+|.+.+ ++||+|+||++..++ ++|++++... ||+|+||++.+. +|
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~------------s~nv~I~n~~i~~gD-D~Iaiks~~~----ni~v~n~~~~~g-hG 188 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDS------------SKNVTIENCFIDNGD-DCIAIKSGSG----NILVENCTCSGG-HG 188 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEES------------EEEEEEESEEEESSS-ESEEESSEEC----EEEEESEEEESS-SE
T ss_pred EEcceEEEecCCCCCcceEEEEe------------eeEEEEEEeeccccc-Cccccccccc----ceEEEeEEEecc-cc
Confidence 999999986 246666654 899999999999988 9999998543 999999999765 89
Q ss_pred EEEEeecCCC--CceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEcc----
Q 009075 390 VRIKTAVGRG--GYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGI---- 463 (544)
Q Consensus 390 i~Ikt~~g~~--g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~---- 463 (544)
+.|.+....+ ..|+||+|+|+++.+..++++|+.... +.+.|+||+|+||++++...|+.|...
T Consensus 189 isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~----------~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~ 258 (326)
T PF00295_consen 189 ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG----------GGGYVSNITFENITMENVKYPIFIDQDYRDG 258 (326)
T ss_dssp EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT----------TSEEEEEEEEEEEEEEEESEEEEEEEEECTT
T ss_pred ceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc----------cceEEeceEEEEEEecCCceEEEEEeccccc
Confidence 9999875322 369999999999999999999997532 225899999999999999888877531
Q ss_pred -------CCCCeecEEEEeEEEEecC
Q 009075 464 -------SGDPFTGICIANATIGMAA 482 (544)
Q Consensus 464 -------~~~~i~~I~~~NV~~~~~~ 482 (544)
....+++|+|+||+.+...
T Consensus 259 ~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 259 GPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred cccCcccCCceEEEEEEEeeEEEecc
Confidence 1235999999999998763
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.59 E-value=4.1e-13 Score=138.12 Aligned_cols=225 Identities=15% Similarity=0.166 Sum_probs=128.6
Q ss_pred HHHHHHHhhccCCCCCcEEEEcCCeEEe-eeEEEe-eeeEEeeecC--cEEEecCCCCCCCCCCCCCCCCCccccCCCcc
Q 009075 136 FKDAINQLSQYSSDGGAQLYVPAGKWLT-GSFNLI-SHFTLYLHKD--AFLLASQDLNEWPVIKPLPSYGRGRDAAAGRY 211 (544)
Q Consensus 136 iq~AI~~~~~~~~~gg~~v~iP~G~Yl~-g~i~l~-S~~tl~l~~g--a~l~~~~~~~~~~~~~~l~s~g~g~~~~~~~~ 211 (544)
||+|+++| +.|.+|++|+|+|.. +++.+. ++++|..+.. ++|.+..... +
T Consensus 1 iQ~Ai~~A-----~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~-------------~-------- 54 (314)
T TIGR03805 1 LQEALIAA-----QPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVG-------------G-------- 54 (314)
T ss_pred CHhHHhhC-----CCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCC-------------C--------
Confidence 69999998 568999999999975 578876 7777765432 2232221100 0
Q ss_pred eeeEEEeceeceEEeCcccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEEeeEEee-------CCCCCccccCC
Q 009075 212 TSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLN-------SPSWNVHPVYS 284 (544)
Q Consensus 212 ~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~n-------s~~~~i~~~~~ 284 (544)
..-+ ....++|+|+|. ++...+ ..+|.+..+++++|+++++.. ...++|.+..|
T Consensus 55 ~~~i-~v~a~~VtI~~l--tI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s 115 (314)
T TIGR03805 55 AEGL-LVTSDDVTLSDL--AVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVES 115 (314)
T ss_pred CceE-EEEeCCeEEEee--EEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEecc
Confidence 0011 123466666662 332211 125666677777777777651 23466777777
Q ss_pred eeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEE
Q 009075 285 SNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIA 364 (544)
Q Consensus 285 ~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIs 364 (544)
++++|+++++... ..+||.+..|++++|+++.+.....+|-+.. +.++.|+++.+.... .||.
T Consensus 116 ~~v~I~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~------------S~~~~v~~N~~~~N~-~Gi~ 178 (314)
T TIGR03805 116 TNVLVEDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN------------SQNADVYNNIATNNT-GGIL 178 (314)
T ss_pred CCEEEECCEEECC----CcccEEECCCCCeEEECCEEccCcceEEEEe------------cCCcEEECCEEeccc-eeEE
Confidence 7777777777652 2247777777777777777766555555532 566777777777655 5666
Q ss_pred Eccccc---CCeEEEEEEeeEEEcCC-ceEE-----EEeecCCCCce----eeEEEEeeEecccc-eeEEEE
Q 009075 365 LGSEMS---GGIQDVRAEDIKAINTE-SGVR-----IKTAVGRGGYV----KDIYVRGMTMHTMK-WAFWMT 422 (544)
Q Consensus 365 IGs~~~---g~v~nI~v~n~~~~~~~-~Gi~-----Ikt~~g~~g~v----~nI~~~ni~~~~v~-~~i~I~ 422 (544)
+-.... ...++++|+++++.+.. ..+. +...+...|.+ +++.|+|.++.+.. .++.+.
T Consensus 179 v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 179 VFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred EeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 633211 13457777777776542 1111 11111112322 66777777776653 345554
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.9e-11 Score=131.81 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=151.9
Q ss_pred ceeeEEEeceeceEEeCcccEEeCCCc--hhhhhccc---------CCCCCCCCeeEEEEeeecEEEEeeEEeeCCCCCc
Q 009075 211 YTSLIFGTNLTDVIVTGDNGTIDGQGA--LWWQQFHK---------GKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNV 279 (544)
Q Consensus 211 ~~~~i~~~~~~nV~I~G~~GtidG~G~--~ww~~~~~---------~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i 279 (544)
+.+.++.....+..+.++ |.+|+.+. .||..... ....+.|+.. .+...- .....+.-+-.+..++
T Consensus 165 ~~~~~~a~~~~~~~~~~~-g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~-~~~~~g-~~~~~i~~~~~rp~~~ 241 (542)
T COG5434 165 SGPYVYATDSDNAMISGE-GLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDK-WFSGLG-AVETRIGGKGVRPRTV 241 (542)
T ss_pred cCcceeeecccCceeeee-cccccCcccceeccCCceEEEeccceecCccccchhh-hhhccc-chhhcccccCcCCceE
Confidence 456678888888889886 87776332 23322110 0000112210 000000 0011111111234578
Q ss_pred cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCc----eeeccCCCCccCccccCceeeEEEEEEEE
Q 009075 280 HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDD----CVAVKSGWDEYGIAYGMPTKQLVIRRLTC 355 (544)
Q Consensus 280 ~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD----~Iai~sg~~~~G~~~~~~s~nI~I~n~~~ 355 (544)
.+..|+||++.+++|.+++ -.++|+..|++++++|..|.+.++ ++.+.+ |+|++|++|+|
T Consensus 242 ~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s------------c~NvlI~~~~f 305 (542)
T COG5434 242 VLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS------------CSNVLIEGCRF 305 (542)
T ss_pred EEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc------------ceeEEEeccEE
Confidence 8899999999999999965 367999999999999999988443 555544 99999999999
Q ss_pred eCCCCceEEEccccc-------CCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccceeEEEEeecCCC
Q 009075 356 ISPYSATIALGSEMS-------GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSH 428 (544)
Q Consensus 356 ~~~~~~gIsIGs~~~-------g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~ 428 (544)
..++ ++|++.+... +..++|+|+||+|.....++-+.++. +|.|+||++||+.|.+...+++|+.....
T Consensus 306 dtgD-D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~~- 381 (542)
T COG5434 306 DTGD-DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDGR- 381 (542)
T ss_pred ecCC-ceEEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeeccc-
Confidence 9987 8999998643 23689999999999777778787875 78999999999999999999999976432
Q ss_pred CCCCCCCCCCCeEEeEEEEEEEEecc
Q 009075 429 ADNHYDPKALPVIQGINYRDIVADNV 454 (544)
Q Consensus 429 ~~~~~~~~~~~~I~nItf~NI~~t~~ 454 (544)
.+.++||+|+++.+.++
T Consensus 382 ---------gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 382 ---------GGGVRNIVFEDNKMRNV 398 (542)
T ss_pred ---------ceeEEEEEEecccccCc
Confidence 25899999999998776
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.14 E-value=1.1e-09 Score=112.78 Aligned_cols=164 Identities=20% Similarity=0.239 Sum_probs=127.3
Q ss_pred eeceEEeCccc----EEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEE
Q 009075 220 LTDVIVTGDNG----TIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITII 295 (544)
Q Consensus 220 ~~nV~I~G~~G----tidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~ 295 (544)
.++|+|+|. | +||+.++. .....+ +..+++|+|+++++.++..++|.+..|++++|+++++.
T Consensus 31 ~~~Iti~G~-g~~~tvid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~ 96 (314)
T TIGR03805 31 ADGVTIRGA-GMDETILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVE 96 (314)
T ss_pred CCCeEEEec-CCCccEEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEE
Confidence 378999996 4 47776642 112334 44689999999999999999999999999999999997
Q ss_pred CCCC---CCCCCCCCCCCcccEEEEccEEecC-CceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccC
Q 009075 296 APVT---SPNTDGINPDSCTNTRIEDCYIVSG-DDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSG 371 (544)
Q Consensus 296 ~~~~---~~n~DGI~~~~s~nV~I~n~~i~~g-DD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g 371 (544)
.... ....+||.+..|++++|++|.++.. |++|.++. ++|++|+||++.... .||.+-.
T Consensus 97 ~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~n~-~GI~i~~---- 159 (314)
T TIGR03805 97 WTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEENV-AGIEIEN---- 159 (314)
T ss_pred eccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEccCc-ceEEEEe----
Confidence 4322 1346899999999999999999884 45787754 799999999999876 7888852
Q ss_pred CeEEEEEEeeEEEcCCceEEEEeecCCC-CceeeEEEEeeEeccc
Q 009075 372 GIQDVRAEDIKAINTESGVRIKTAVGRG-GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 372 ~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~nI~~~ni~~~~v 415 (544)
..++.|+|+++.+...|+.+-..++.. -.-+++++++..+.+.
T Consensus 160 -S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 160 -SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred -cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 467899999999988899886554321 2346788887777643
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.63 E-value=2.6e-07 Score=84.25 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=100.7
Q ss_pred eEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCC
Q 009075 255 LMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGW 334 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~ 334 (544)
+|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+++....++++++|.+.....++.+..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~-- 74 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVSG-- 74 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECCS--
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEEe--
Confidence 467778889999999999999999999999999999999997 4678999888999999999998665555542
Q ss_pred CccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCC-ceEEEEeecCCCCceeeEEEEeeEec
Q 009075 335 DEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTE-SGVRIKTAVGRGGYVKDIYVRGMTMH 413 (544)
Q Consensus 335 ~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~-~Gi~Ikt~~g~~g~v~nI~~~ni~~~ 413 (544)
+.+++|++|.+......||.+.. ...+++|++|+|.+.. .|+.+.... -.+++|+++++.
T Consensus 75 ----------~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~ 135 (158)
T PF13229_consen 75 ----------SSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTIS 135 (158)
T ss_dssp -----------CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEE
T ss_pred ----------cCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEE
Confidence 78899999999988755888863 2557999999999876 788887643 235777777777
Q ss_pred ccc-eeEEEE
Q 009075 414 TMK-WAFWMT 422 (544)
Q Consensus 414 ~v~-~~i~I~ 422 (544)
+.. .+|.+.
T Consensus 136 ~~~~~gi~~~ 145 (158)
T PF13229_consen 136 NNGGNGIYLI 145 (158)
T ss_dssp CESSEEEE-T
T ss_pred eCcceeEEEE
Confidence 653 666553
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.62 E-value=1.5e-07 Score=91.61 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=56.5
Q ss_pred CCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcC
Q 009075 307 NPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINT 386 (544)
Q Consensus 307 ~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~ 386 (544)
.|++++||.|+|+.+.+.| |+ |+ ++||+|.|+++.+- -+|. ..+|+++.||++.+.
T Consensus 151 ~Fq~~kNvei~ns~l~sKD---AF---Wn---------~eNVtVyDS~i~GE-----YLgW----~SkNltliNC~I~g~ 206 (277)
T PF12541_consen 151 SFQYCKNVEIHNSKLDSKD---AF---WN---------CENVTVYDSVINGE-----YLGW----NSKNLTLINCTIEGT 206 (277)
T ss_pred EeeceeeEEEEccEEeccc---cc---cc---------CCceEEEcceEeee-----EEEE----EcCCeEEEEeEEecc
Confidence 4567889999999888765 22 22 78888888888732 2443 466888888888776
Q ss_pred CceEEEEeecCCCCceeeEEEEeeEecccceeEE
Q 009075 387 ESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFW 420 (544)
Q Consensus 387 ~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~ 420 (544)
+ |+ -+++|++++|++|.++.-+|-
T Consensus 207 Q-pL---------CY~~~L~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 207 Q-PL---------CYCDNLVLENCTMIDTDLAFE 230 (277)
T ss_pred C-cc---------EeecceEEeCcEeecceeeee
Confidence 2 32 457788888888887766553
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.55 E-value=1.7e-06 Score=91.06 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=106.8
Q ss_pred eEEEEeeecEEEEeeEEeeCCC------CCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEec-CCce
Q 009075 255 LMEFMYTDNIQISSLTLLNSPS------WNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVS-GDDC 327 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gDD~ 327 (544)
++.-...+||+|++++|.++.. ..|++..|++++|++++|.++. .-||.++.|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 5667778999999999999763 4688899999999999999742 3789999998 7777777765 5555
Q ss_pred eeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEccc-------------------------ccC------CeEEE
Q 009075 328 VAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSE-------------------------MSG------GIQDV 376 (544)
Q Consensus 328 Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~-------------------------~~g------~v~nI 376 (544)
|.+.. +++..|+++++.+....||.|--. ..| ...++
T Consensus 183 I~lw~------------S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v 250 (455)
T TIGR03808 183 IVSFD------------ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNV 250 (455)
T ss_pred EEEec------------cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCe
Confidence 54432 889999999999876556766521 001 14578
Q ss_pred EEEeeEEEcCC-ceEEEEeecCCCCceeeEEEEeeEecccce-eEEE
Q 009075 377 RAEDIKAINTE-SGVRIKTAVGRGGYVKDIYVRGMTMHTMKW-AFWM 421 (544)
Q Consensus 377 ~v~n~~~~~~~-~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~-~i~I 421 (544)
+|+++++.++. .|+++.+. +|+.|++.+++++++ ++..
T Consensus 251 ~V~gN~I~~~r~dgI~~nss-------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 251 IVRGNRIRNCDYSAVRGNSA-------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred EEECCEEeccccceEEEEcc-------cCcEEECcEeeeeeeeEEEE
Confidence 88888888888 88888764 567777777777766 5543
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.53 E-value=3.6e-07 Score=89.08 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=60.7
Q ss_pred EEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCcc
Q 009075 258 FMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEY 337 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~ 337 (544)
|+.|++++++|++|-+++-. +..|++|+++|+.+.+.. -+..|+|+.|++..+... -++
T Consensus 94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdY--------f~m~s~ni~id~l~~~Gn---Y~F------- 152 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDY--------FFMNSENIYIDNLVLDGN---YSF------- 152 (277)
T ss_pred hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceE--------eeeeccceEEeceEEeCC---EEe-------
Confidence 34555555555555555321 223555555555553211 112345555555544321 001
Q ss_pred CccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccc
Q 009075 338 GIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 338 G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~ 416 (544)
..++||.|+|+.+.+-+ ++ ...+||+|.|..+.|- .+ .|. -+|++|.|+++.+.+
T Consensus 153 -----q~~kNvei~ns~l~sKD--AF-------Wn~eNVtVyDS~i~GE----YL-gW~-----SkNltliNC~I~g~Q 207 (277)
T PF12541_consen 153 -----QYCKNVEIHNSKLDSKD--AF-------WNCENVTVYDSVINGE----YL-GWN-----SKNLTLINCTIEGTQ 207 (277)
T ss_pred -----eceeeEEEEccEEeccc--cc-------ccCCceEEEcceEeee----EE-EEE-----cCCeEEEEeEEeccC
Confidence 12678888887777543 22 2567888888777432 23 232 378888888888754
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.35 E-value=3.4e-06 Score=76.88 Aligned_cols=152 Identities=21% Similarity=0.200 Sum_probs=97.9
Q ss_pred EEeceeceEEeCcccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEE
Q 009075 216 FGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITII 295 (544)
Q Consensus 216 ~~~~~~nV~I~G~~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~ 295 (544)
...+..+++|++ .+|...+ ..+|.+..+..++|++.+|.+ ...++.+....+++++++++.
T Consensus 4 ~i~~~~~~~i~~--~~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~ 64 (158)
T PF13229_consen 4 SINNGSNVTIRN--CTISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTIS 64 (158)
T ss_dssp EETTCEC-EEES--EEEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEE
T ss_pred EEECCcCeEEee--eEEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEE
Confidence 344556666766 4555432 246888888889999999999 778899999999999999998
Q ss_pred CCCCCCCCCCCCCCCcccEEEEccEEec-CCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeE
Q 009075 296 APVTSPNTDGINPDSCTNTRIEDCYIVS-GDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQ 374 (544)
Q Consensus 296 ~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~ 374 (544)
... .|+.+..+.+++|++|.|.. ++.+|.+.. +..+++|++|++....+.|+.+.... -.
T Consensus 65 ~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~-----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~ 125 (158)
T PF13229_consen 65 DNG-----SGIYVSGSSNITIENNRIENNGDYGIYISN-----------SSSNVTIENNTIHNNGGSGIYLEGGS---SP 125 (158)
T ss_dssp S-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TC-----------EECS-EEES-EEECCTTSSCEEEECC-----
T ss_pred Ecc-----ceEEEEecCCceecCcEEEcCCCccEEEec-----------cCCCEEEEeEEEEeCcceeEEEECCC---CC
Confidence 742 68888889999999999987 444776653 25789999999998766788876432 34
Q ss_pred EEEEEeeEEEcCC-ceEEEEeecCCCCceeeEEEEeeE
Q 009075 375 DVRAEDIKAINTE-SGVRIKTAVGRGGYVKDIYVRGMT 411 (544)
Q Consensus 375 nI~v~n~~~~~~~-~Gi~Ikt~~g~~g~v~nI~~~ni~ 411 (544)
+++|++|++.+.. .|+.+.... .++++.|.+
T Consensus 126 ~~~i~~n~i~~~~~~gi~~~~~~------~~~~v~~n~ 157 (158)
T PF13229_consen 126 NVTIENNTISNNGGNGIYLISGS------SNCTVTNNT 157 (158)
T ss_dssp S-EEECEEEECESSEEEE-TT-S------S--EEES-E
T ss_pred eEEEEEEEEEeCcceeEEEECCC------CeEEEECCC
Confidence 7889999998875 677664432 145555544
No 27
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.35 E-value=6.6e-06 Score=87.58 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=100.7
Q ss_pred ccccCCeeEEEEeeEEECCCCCCCCCCCCCCC-cc---cEEEEccEEec----CCceeeccCCCCccCccccCceeeEEE
Q 009075 279 VHPVYSSNILVQGITIIAPVTSPNTDGINPDS-CT---NTRIEDCYIVS----GDDCVAVKSGWDEYGIAYGMPTKQLVI 350 (544)
Q Consensus 279 i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~-s~---nV~I~n~~i~~----gDD~Iai~sg~~~~G~~~~~~s~nI~I 350 (544)
+....+++.++++++|..++. ..+++.+ +. +..|+|...-. .-|++.+. +|-+|
T Consensus 323 ~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly--------------~nS~i 384 (582)
T PF03718_consen 323 ISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY--------------PNSTI 384 (582)
T ss_dssp CS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B----------------TT-EE
T ss_pred hccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCcccc--------------CCCee
Confidence 456788999999999999762 2344443 32 46788877654 45666654 45589
Q ss_pred EEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEeccc---------ceeEEE
Q 009075 351 RRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTM---------KWAFWM 421 (544)
Q Consensus 351 ~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v---------~~~i~I 421 (544)
+||.++..+ ++|.+- ..++.++||+++...+|--|...- .+..++||+|+|+.+-.. ..+|+-
T Consensus 385 ~dcF~h~nD-D~iKlY------hS~v~v~~~ViWk~~Ngpiiq~GW-~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ 456 (582)
T PF03718_consen 385 RDCFIHVND-DAIKLY------HSNVSVSNTVIWKNENGPIIQWGW-TPRNISNVSVENIDIIHNRWIWHNNYVNTAILG 456 (582)
T ss_dssp EEEEEEESS--SEE--------STTEEEEEEEEEE-SSS-SEE--C-S---EEEEEEEEEEEEE---SSGGCTTT-ECEE
T ss_pred eeeEEEecC-chhhee------ecCcceeeeEEEecCCCCeEEeec-cccccCceEEeeeEEEeeeeecccCCCCceeEe
Confidence 999999888 898764 358999999999987766564321 256799999999998754 234554
Q ss_pred E-eecCCCCCCCCCCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEe
Q 009075 422 T-GNYGSHADNHYDPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGM 480 (544)
Q Consensus 422 ~-~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~ 480 (544)
. ..|.+-.. .......-.|++++|+||+.++. ...++|. +-...+||.++|+.+..
T Consensus 457 ss~~y~~~~s-~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~~ 514 (582)
T PF03718_consen 457 SSPFYDDMAS-TKTADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFES 514 (582)
T ss_dssp E--BTTS-SS-S--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEECE
T ss_pred cccccccccC-CCCCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeeccc
Confidence 3 34522111 11111112789999999999876 3344454 55567789999999974
No 28
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.17 E-value=7.8e-05 Score=73.46 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=35.7
Q ss_pred CceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCCeE---EeeeEEEeeeeEEeee
Q 009075 113 RAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKW---LTGSFNLISHFTLYLH 177 (544)
Q Consensus 113 ~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Y---l~g~i~l~S~~tl~l~ 177 (544)
...++|+.||-.. |=-++|..|+.. +.||++|+|-- +-..+.++.+-||++.
T Consensus 31 ~~~~vni~dy~~~-----dwiasfkqaf~e--------~qtvvvpagl~cenint~ifip~gktl~v~ 85 (464)
T PRK10123 31 ARQSVNINDYNPH-----DWIASFKQAFSE--------GQTVVVPAGLVCDNINTGIFIPPGKTLHIL 85 (464)
T ss_pred CCceeehhhcCcc-----cHHHHHHHHhcc--------CcEEEecCccEecccccceEeCCCCeEEEE
Confidence 5678899999654 556778777663 56899999952 2235666766666553
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.12 E-value=3.4e-05 Score=76.22 Aligned_cols=114 Identities=22% Similarity=0.152 Sum_probs=88.8
Q ss_pred eEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCC
Q 009075 255 LMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGW 334 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~ 334 (544)
.+.+..+.+++|++.++.+. .+++++..|++++|+++.+.. +..||.+..+.+.+|+++.|.....+|.+..
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 46788888888988888888 778888888888888888886 3478888888877888888887666777654
Q ss_pred CccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcC-CceEEE
Q 009075 335 DEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINT-ESGVRI 392 (544)
Q Consensus 335 ~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~-~~Gi~I 392 (544)
+.+.+|+++++.... .||.+.. ..+.+|++++|.+. ..|+.+
T Consensus 109 ----------s~~~~I~~N~i~~~~-~GI~l~~-----s~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 109 ----------SSNNTISNNTISNNG-YGIYLSS-----SSNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred ----------CCceEEECcEEeCCC-EEEEEEe-----CCCCEEECeEEeCCCccceEE
Confidence 566788888888544 7888763 25778888888877 678873
No 30
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.11 E-value=0.00014 Score=71.95 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEcCCeEEee-----eEEEeeeeEEee
Q 009075 133 TKAFKDAINQLSQYSSDGGAQLYVPAGKWLTG-----SFNLISHFTLYL 176 (544)
Q Consensus 133 T~Aiq~AI~~~~~~~~~gg~~v~iP~G~Yl~g-----~i~l~S~~tl~l 176 (544)
=+-|++|++.| ..|.+|++-+|+|... ||.++++++|..
T Consensus 15 ~~Ti~~A~~~a-----~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G 58 (246)
T PF07602_consen 15 FKTITKALQAA-----QPGDTIQLAPGTYSEATGETFPIIIKPGVTLIG 58 (246)
T ss_pred HHHHHHHHHhC-----CCCCEEEECCceeccccCCcccEEecCCeEEee
Confidence 35689999987 5788999999999642 577777776644
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.08 E-value=2.5e-05 Score=77.27 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=111.7
Q ss_pred eeEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCC
Q 009075 254 YLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 333 (544)
Q Consensus 254 ~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg 333 (544)
..|.+..+++..|++.++.+.. .++.+..+.+++|++++|.. +..||++..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 3588888899999999998764 57789999999999999986 3689999999999999999998778888876
Q ss_pred CCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEec
Q 009075 334 WDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMH 413 (544)
Q Consensus 334 ~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~ 413 (544)
+.+.+|+++++.... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.
T Consensus 87 -----------s~~~~I~~N~i~~n~-~GI~l~~-----s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~ 142 (236)
T PF05048_consen 87 -----------SSNNTISNNTISNNG-YGIYLYG-----SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTIS 142 (236)
T ss_pred -----------CCCcEEECCEecCCC-ceEEEee-----CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEe
Confidence 455699999999877 5887753 44688999999987888888653 45677777777
Q ss_pred cc-ceeEEE
Q 009075 414 TM-KWAFWM 421 (544)
Q Consensus 414 ~v-~~~i~I 421 (544)
+. ..+|.+
T Consensus 143 ~n~~~Gi~~ 151 (236)
T PF05048_consen 143 NNTDYGIYF 151 (236)
T ss_pred CCCccceEE
Confidence 76 777773
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=0.00021 Score=71.18 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=37.5
Q ss_pred EEEeceeceEEeCc--ccEEeCCCchhhhhcccCCCCCCCCeeEEEEeeecEEEEeeEEeeCCC-----CCccc-cCCee
Q 009075 215 IFGTNLTDVIVTGD--NGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPS-----WNVHP-VYSSN 286 (544)
Q Consensus 215 i~~~~~~nV~I~G~--~GtidG~G~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~-----~~i~~-~~~~n 286 (544)
+....+.|.+|.|. ++++-|- .+.+....||.|+|++|...+. ..|.+ ...+|
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~-------------------gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~n 155 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGG-------------------GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHN 155 (345)
T ss_pred EEEeeccccEEEeeccccEEEec-------------------eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeE
Confidence 55577888889886 2244432 3666667788888888877652 23333 34444
Q ss_pred EEEEeeEEEC
Q 009075 287 ILVQGITIIA 296 (544)
Q Consensus 287 v~I~~~~I~~ 296 (544)
+.|++|++..
T Consensus 156 IWIDH~tf~~ 165 (345)
T COG3866 156 IWIDHNTFSG 165 (345)
T ss_pred EEEEeeEecc
Confidence 4444444443
No 33
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.03 E-value=0.00017 Score=76.17 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhhccCCCCCcEEEEcCCeEEeeeEEE
Q 009075 132 NTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNL 168 (544)
Q Consensus 132 dT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Yl~g~i~l 168 (544)
+.++||+||+.| .+|.+|+++.|+|.-..|.+
T Consensus 3 s~~~lq~Ai~~a-----~pGD~I~L~~Gty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNA-----KPGDTIVLADGTYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEET-EEEE
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceeecceEEE
Confidence 578999999988 67999999999997433443
No 34
>smart00656 Amb_all Amb_all domain.
Probab=98.00 E-value=6e-05 Score=72.16 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=73.5
Q ss_pred CeeEEEEeeEEECCCC--CCCCCCCCCCCcccEEEEccEEecC----------CceeeccCCCCccCccccCceeeEEEE
Q 009075 284 SSNILVQGITIIAPVT--SPNTDGINPDSCTNTRIEDCYIVSG----------DDCVAVKSGWDEYGIAYGMPTKQLVIR 351 (544)
Q Consensus 284 ~~nv~I~~~~I~~~~~--~~n~DGI~~~~s~nV~I~n~~i~~g----------DD~Iai~sg~~~~G~~~~~~s~nI~I~ 351 (544)
++||.|++++|..... ..+.|+|.+..+++|.|.+|.|..+ |..+.++.+ +.+++|+
T Consensus 39 ~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s~~vTvs 107 (190)
T smart00656 39 VSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------STYVTIS 107 (190)
T ss_pred cceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------cccEEEE
Confidence 4455555555554332 1357888888889999999999876 444455543 8999999
Q ss_pred EEEEeCCCCceEEEccccc---CCeEEEEEEeeEEEcCC-ceEEEEeecCCCCceeeEEEEeeEeccc
Q 009075 352 RLTCISPYSATIALGSEMS---GGIQDVRAEDIKAINTE-SGVRIKTAVGRGGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 352 n~~~~~~~~~gIsIGs~~~---g~v~nI~v~n~~~~~~~-~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v 415 (544)
+|.|..-+ .+.-+|+... ....+|++.++.+.++. +.-+++ .| .+.+-|..+.+.
T Consensus 108 ~~~f~~h~-~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-----~g---~~hv~NN~~~n~ 166 (190)
T smart00656 108 NNYFHNHW-KVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-----FG---YVHVYNNYYTGW 166 (190)
T ss_pred CceEecCC-EEEEEccCCCccccccceEEEECcEEcCcccCCCccc-----CC---EEEEEeeEEeCc
Confidence 99998655 6888887532 23458999999997652 333332 12 355555555554
No 35
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.97 E-value=0.00063 Score=68.75 Aligned_cols=144 Identities=20% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCCcEEEEcCCeEEeeeEEEeeeeEEeeecCcEEEecCCCCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCc
Q 009075 149 DGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGD 228 (544)
Q Consensus 149 ~gg~~v~iP~G~Yl~g~i~l~S~~tl~l~~ga~l~~~~~~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~ 228 (544)
.+|+.+-+. |+| .|++.+...++|..+.++++-+... | +.+. ....+++++|
T Consensus 32 ~pgd~~~i~-g~~-~g~~vInr~l~l~ge~ga~l~g~g~---------------G---------~~vt-v~aP~~~v~G- 83 (408)
T COG3420 32 KPGDYYGIS-GRY-AGNFVINRALTLRGENGAVLDGGGK---------------G---------SYVT-VAAPDVIVEG- 83 (408)
T ss_pred CCCcEEEEe-eee-cccEEEccceeeccccccEEecCCc---------------c---------cEEE-EeCCCceeee-
Confidence 577777788 887 4566666677777888888765321 1 2233 3456777777
Q ss_pred ccEEeCCCchhhhhcccCCCCCCCCeeEEE-EeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCC---CCCCC
Q 009075 229 NGTIDGQGALWWQQFHKGKLKYTRPYLMEF-MYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVT---SPNTD 304 (544)
Q Consensus 229 ~GtidG~G~~ww~~~~~~~~~~~rp~~i~~-~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~---~~n~D 304 (544)
-+..+.|..-- .....|.+ ...+.-.|+...+... .+++.+..+.++.|.+.+|....+ ...++
T Consensus 84 -l~vr~sg~~lp----------~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGn 151 (408)
T COG3420 84 -LTVRGSGRSLP----------AMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGN 151 (408)
T ss_pred -EEEecCCCCcc----------cccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccC
Confidence 46666554211 11122322 3344555666655554 468888899999999999988654 24578
Q ss_pred CCCCCCcccEEEEccEEecCCceeeccC
Q 009075 305 GINPDSCTNTRIEDCYIVSGDDCVAVKS 332 (544)
Q Consensus 305 GI~~~~s~nV~I~n~~i~~gDD~Iai~s 332 (544)
||++++++++.|....+.-+.|||-...
T Consensus 152 GI~vyNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 152 GIYVYNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred ceEEEcCCCcEEEcCccccccceEEEcc
Confidence 9999999999999999999999998765
No 36
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.00012 Score=72.79 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=95.1
Q ss_pred EEEEeeecEEEEeeEEe-eCCCCCccccCCeeEEEEeeEEECCCC-CCCCCCCCC-CCcccEEEEccEEec---------
Q 009075 256 MEFMYTDNIQISSLTLL-NSPSWNVHPVYSSNILVQGITIIAPVT-SPNTDGINP-DSCTNTRIEDCYIVS--------- 323 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~-ns~~~~i~~~~~~nv~I~~~~I~~~~~-~~n~DGI~~-~~s~nV~I~n~~i~~--------- 323 (544)
+.+.-+.|.+|.|+--. ---+|++.+....||.|+|++|+.... .++-|+|.+ ..++|+.|.+|+|..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 77888888888877522 123588999999999999999998552 244588999 789999999999987
Q ss_pred CCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEccccc----CCeEEEEEEeeEEEcCC-ceEEEE
Q 009075 324 GDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMS----GGIQDVRAEDIKAINTE-SGVRIK 393 (544)
Q Consensus 324 gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~----g~v~nI~v~n~~~~~~~-~Gi~Ik 393 (544)
+|..+.|+-+ +..|+|++|+|...+ -++-+|+... ++-.+|++.+|+|.+.. ++=||+
T Consensus 175 ~DGl~Dik~~-----------AnyITiS~n~fhdh~-Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriR 237 (345)
T COG3866 175 GDGLVDIKKD-----------ANYITISYNKFHDHD-KSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIR 237 (345)
T ss_pred CCccEEeccC-----------CcEEEEEeeeeecCC-eeeeeccCCcccccCCceeEEEeccccccccccCCceE
Confidence 3444445443 899999999999766 6888888643 35568999999998863 333444
No 37
>PLN02480 Probable pectinesterase
Probab=97.90 E-value=0.0011 Score=68.94 Aligned_cols=132 Identities=11% Similarity=0.094 Sum_probs=71.8
Q ss_pred EEeeecEEEEeeEEeeCCCC---------Cccc-cCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCce
Q 009075 258 FMYTDNIQISSLTLLNSPSW---------NVHP-VYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDC 327 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~---------~i~~-~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ 327 (544)
....++++++||+|+|+... .+-+ ...+++.+.+|+|.... |-+.. ....-..+||+|...=|=
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~Q-----DTLy~-~~gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTH-----NTLFD-YKGRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEeccc-----ceeEe-CCCCEEEEeCEEEeeeeE
Confidence 34567888999999988321 1222 35677788888887643 32221 123466777877764332
Q ss_pred eeccCCCCccCccccCceeeEEEEEEEEeCCCC------ceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCC-C
Q 009075 328 VAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS------ATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-G 400 (544)
Q Consensus 328 Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~------~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g 400 (544)
| . | .-...++||++..... ..|.-.+.....-....|.||++.+.. .+ +-|+. +
T Consensus 202 I-F--G-----------~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~g-~~----yLGRPW~ 262 (343)
T PLN02480 202 I-F--G-----------RGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGIG-EV----YLGRAKG 262 (343)
T ss_pred E-c--c-----------ceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEcccC-ce----eeecCCC
Confidence 2 1 1 2355777777774310 123222222223346778888886642 12 22222 3
Q ss_pred ceeeEEEEeeEecc
Q 009075 401 YVKDIYVRGMTMHT 414 (544)
Q Consensus 401 ~v~nI~~~ni~~~~ 414 (544)
.-..+.|.|+.|.+
T Consensus 263 ~ya~vVf~~t~l~~ 276 (343)
T PLN02480 263 AYSRVIFAKTYLSK 276 (343)
T ss_pred CcceEEEEecccCC
Confidence 35667777777765
No 38
>smart00656 Amb_all Amb_all domain.
Probab=97.88 E-value=0.00042 Score=66.36 Aligned_cols=123 Identities=12% Similarity=0.046 Sum_probs=84.9
Q ss_pred eEEEEeeecEEEEeeEEeeCCC------CCccccCCeeEEEEeeEEECCC----CCCCCCCC-CCC-CcccEEEEccEEe
Q 009075 255 LMEFMYTDNIQISSLTLLNSPS------WNVHPVYSSNILVQGITIIAPV----TSPNTDGI-NPD-SCTNTRIEDCYIV 322 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~I~~~~I~~~~----~~~n~DGI-~~~-~s~nV~I~n~~i~ 322 (544)
.|.+..++||.|++++|++... .+|.+..+++|.|++|++.... .....||. ++. .+.+|+|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4777779999999999998643 5788889999999999999741 01114553 333 4789999999998
Q ss_pred cCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCC
Q 009075 323 SGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTE 387 (544)
Q Consensus 323 ~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~ 387 (544)
..+-+..+.++.... .....+|++.+|++.+..+..-.+.. + .+.+-|+.+.+..
T Consensus 113 ~h~~~~liG~~d~~~----~~~~~~vT~h~N~~~~~~~R~P~~r~----g--~~hv~NN~~~n~~ 167 (190)
T smart00656 113 NHWKVMLLGHSDSDT----DDGKMRVTIAHNYFGNLRQRAPRVRF----G--YVHVYNNYYTGWT 167 (190)
T ss_pred cCCEEEEEccCCCcc----ccccceEEEECcEEcCcccCCCcccC----C--EEEEEeeEEeCcc
Confidence 766566665531100 00024799999999865433333321 2 6899999998874
No 39
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.66 E-value=0.0012 Score=63.95 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=80.1
Q ss_pred EEEEeeEEeeCCC------CCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCcc
Q 009075 264 IQISSLTLLNSPS------WNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEY 337 (544)
Q Consensus 264 v~I~~v~i~ns~~------~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~ 337 (544)
+.|+|+++..... .++.+..++++.|++|++.+. +.+|+.+..+....+.+..... ++.+..+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~---- 162 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNG---- 162 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESC----
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccc----
Confidence 3477777665432 346677788888888888763 4566666644444444433221 1222222
Q ss_pred CccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEc-CCceEEEEeecCCCCceeeEEEEeeEecccc
Q 009075 338 GIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAIN-TESGVRIKTAVGRGGYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 338 G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~-~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~ 416 (544)
+.++.+.|+.+.+.. .|+..++ ++++++||.+.+ ...|+.+.... +++++|++++++.
T Consensus 163 -------~~~~~~~~~~~~~~~-~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~~-------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 163 -------SNNVIVNNCIFNGGD-NGIILGN------NNITISNNTFEGNCGNGINIEGGS-------NIIISNNTIENCD 221 (225)
T ss_dssp -------EEEEEEECEEEESSS-CSEECEE------EEEEEECEEEESSSSESEEEEECS-------EEEEEEEEEESSS
T ss_pred -------eeEEEECCccccCCC-ceeEeec------ceEEEEeEEECCccceeEEEECCe-------EEEEEeEEEECCc
Confidence 466778888888776 6754443 799999999988 67899887642 3888888888887
Q ss_pred eeE
Q 009075 417 WAF 419 (544)
Q Consensus 417 ~~i 419 (544)
.+|
T Consensus 222 ~g~ 224 (225)
T PF12708_consen 222 DGI 224 (225)
T ss_dssp EEE
T ss_pred cCc
Confidence 765
No 40
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.65 E-value=0.00018 Score=69.48 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=48.4
Q ss_pred CCCCCCCCCCcccEEEEccEEecC---------CceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccc--
Q 009075 301 PNTDGINPDSCTNTRIEDCYIVSG---------DDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEM-- 369 (544)
Q Consensus 301 ~n~DGI~~~~s~nV~I~n~~i~~g---------DD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~-- 369 (544)
...|+|.+..+++|.|.+|.|..+ |..+.++.+ +.+|+|++|.|.+.. .+..+|+..
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~-----------s~~vTiS~n~f~~~~-k~~l~G~~d~~ 140 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG-----------SDNVTISNNIFDNHN-KTMLIGSSDSN 140 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESS-----------TEEEEEES-EEEEEE-ETCEESSCTTC
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeC-----------CceEEEEchhccccc-cccccCCCCCc
Confidence 457888888888888888888765 333455443 789999999998654 566677751
Q ss_pred --cCCeEEEEEEeeEEEcC
Q 009075 370 --SGGIQDVRAEDIKAINT 386 (544)
Q Consensus 370 --~g~v~nI~v~n~~~~~~ 386 (544)
..+ .+|++.++.+.++
T Consensus 141 ~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 141 STDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp GGGTT-EEEEEES-EEEEE
T ss_pred cccCC-ceEEEEeEEECch
Confidence 223 7888888888664
No 41
>PLN02176 putative pectinesterase
Probab=97.57 E-value=0.007 Score=62.77 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=66.3
Q ss_pred eeecEEEEeeEEeeCCCC----------Cc-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCcee
Q 009075 260 YTDNIQISSLTLLNSPSW----------NV-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCV 328 (544)
Q Consensus 260 ~~~nv~I~~v~i~ns~~~----------~i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~I 328 (544)
.++++..+|++|.|.... .+ .....+...+.+|+|.... |-+... ...-..++|+|...=|=|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~Q-----DTLy~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQ-----DTLFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEeccc-----ceeEeC-CcCEEEEecEEEecccEE
Confidence 467888888888886321 00 1123566777777777533 222222 234666777777544432
Q ss_pred eccCCCCccCccccCceeeEEEEEEEEeCCC-------Cce-EEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecCCC
Q 009075 329 AVKSGWDEYGIAYGMPTKQLVIRRLTCISPY-------SAT-IALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG 399 (544)
Q Consensus 329 ai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-------~~g-IsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~ 399 (544)
- | .-...++||++.... ..| |.--+ .....-....|.||++.+.. +.+-|+.
T Consensus 194 F---G-----------~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-----~~yLGRP 254 (340)
T PLN02176 194 F---G-----------YAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGVG-----KALLGRA 254 (340)
T ss_pred e---c-----------CceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccCc-----ceeeecC
Confidence 1 1 234567777776311 011 22111 11123346777777776542 2222222
Q ss_pred -CceeeEEEEeeEecc
Q 009075 400 -GYVKDIYVRGMTMHT 414 (544)
Q Consensus 400 -g~v~nI~~~ni~~~~ 414 (544)
+.-..+.|.|..|.+
T Consensus 255 W~~yarvVf~~t~m~~ 270 (340)
T PLN02176 255 WGSYARVIFYRSRFSD 270 (340)
T ss_pred CCCCceEEEEecCcCC
Confidence 234567777777665
No 42
>PLN02682 pectinesterase family protein
Probab=97.41 E-value=0.04 Score=57.75 Aligned_cols=134 Identities=12% Similarity=0.116 Sum_probs=70.1
Q ss_pred EEEEeeecEEEEeeEEeeCCCC---C------c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCC
Q 009075 256 MEFMYTDNIQISSLTLLNSPSW---N------V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGD 325 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~---~------i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gD 325 (544)
-.....+++..+|++|.|+... + + .....+.+.+.+|+|.... |-+... ..+-..+||+|...=
T Consensus 157 T~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~V 230 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQ-----DTLYDH-LGRHYFKDCYIEGSV 230 (369)
T ss_pred EEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccc-----cceEEC-CCCEEEEeeEEcccc
Confidence 3455677899999999997421 0 1 1124677777777777643 223222 234567777777544
Q ss_pred ceeeccCCCCccCccccCceeeEEEEEEEEeCCC-Cce-EEEccc-ccCCeEEEEEEeeEEEcCCceEEEEeecCCC-Cc
Q 009075 326 DCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY-SAT-IALGSE-MSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GY 401 (544)
Q Consensus 326 D~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-~~g-IsIGs~-~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~ 401 (544)
|=| . | .-...+++|++..-. ..| |.--+. ....-....|.||++.+.. -+.+ |+. +.
T Consensus 231 DFI-F--G-----------~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yL----GRpW~~ 291 (369)
T PLN02682 231 DFI-F--G-----------NGLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGSG-ALYL----GRAWGT 291 (369)
T ss_pred cEE-e--c-----------CceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCCC-ceEe----ecCCCC
Confidence 422 1 1 234577777776321 012 222121 1122346777777776642 1211 222 23
Q ss_pred eeeEEEEeeEecc
Q 009075 402 VKDIYVRGMTMHT 414 (544)
Q Consensus 402 v~nI~~~ni~~~~ 414 (544)
-..+.|.|..|.+
T Consensus 292 yarvVf~~t~m~~ 304 (369)
T PLN02682 292 FSRVVFAYTYMDN 304 (369)
T ss_pred cceEEEEeccCCC
Confidence 4567777777665
No 43
>PLN02773 pectinesterase
Probab=97.33 E-value=0.021 Score=58.84 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=75.7
Q ss_pred EEEeeecEEEEeeEEeeCCCCC-----ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSWN-----VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~~-----i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.+..++++..+||+|.|+..-. -.....+.+.+.+|+|.... |-+... ..+..++||+|...=|=| .+
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~Q-----DTL~~~-~gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQ-----DTLYLH-YGKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeeccc-----ceeEeC-CCCEEEEeeEEeecccEE-ee
Confidence 4456889999999999984321 11224677888888888643 333222 235677888887654433 11
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCCCceE-EEccc-ccCCeEEEEEEeeEEEcCCceEEEEeecCCC-CceeeEEEE
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSE-MSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVKDIYVR 408 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gI-sIGs~-~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~nI~~~ 408 (544)
.-...+++|++.... .|. .--+. ....-....|.||++.+....- +..-|+. +.-..+.|.
T Consensus 170 -------------~g~a~Fe~c~i~s~~-~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~--~~yLGRpW~~~a~vVf~ 233 (317)
T PLN02773 170 -------------NSTALLEHCHIHCKS-AGFITAQSRKSSQESTGYVFLRCVITGNGGSG--YMYLGRPWGPFGRVVFA 233 (317)
T ss_pred -------------ccEEEEEeeEEEEcc-CcEEECCCCCCCCCCceEEEEccEEecCCCCc--ceeecCCCCCCceEEEE
Confidence 234678888887543 332 22211 1122346788888887653100 1111222 334567777
Q ss_pred eeEecc
Q 009075 409 GMTMHT 414 (544)
Q Consensus 409 ni~~~~ 414 (544)
|+.|.+
T Consensus 234 ~t~l~~ 239 (317)
T PLN02773 234 YTYMDA 239 (317)
T ss_pred ecccCC
Confidence 777776
No 44
>PLN02634 probable pectinesterase
Probab=97.25 E-value=0.052 Score=56.67 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=69.9
Q ss_pred EeeecEEEEeeEEeeCCCCC----------ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCcee
Q 009075 259 MYTDNIQISSLTLLNSPSWN----------VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCV 328 (544)
Q Consensus 259 ~~~~nv~I~~v~i~ns~~~~----------i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~I 328 (544)
...+++..+|++|.|+.... -.....+...+.+|+|.... |-+... ...-..+||+|...=|=|
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~Q-----DTL~~~-~gR~yf~~CyIeG~VDFI 219 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQ-----DTLCDD-AGRHYFKECYIEGSIDFI 219 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEeccc-----ceeeeC-CCCEEEEeeEEcccccEE
Confidence 35678888899998874211 11124667777888877643 333222 235667777777644432
Q ss_pred eccCCCCccCccccCceeeEEEEEEEEeCCCC--ceEEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecCCC-Cceee
Q 009075 329 AVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS--ATIALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVKD 404 (544)
Q Consensus 329 ai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~--~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~n 404 (544)
. | .-...++||++....+ ..|.--+ .....-....|.||++.+.. +.+-|+. +.-..
T Consensus 220 -F--G-----------~g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g-----~~yLGRPW~~yar 280 (359)
T PLN02634 220 -F--G-----------NGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTG-----PLYVGRAMGQYSR 280 (359)
T ss_pred -c--C-----------CceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCCc-----ceEecCCCCCcce
Confidence 1 1 2344677777764221 1122211 12223346778888886642 1122222 33456
Q ss_pred EEEEeeEecc
Q 009075 405 IYVRGMTMHT 414 (544)
Q Consensus 405 I~~~ni~~~~ 414 (544)
+.|.+..|.+
T Consensus 281 vVf~~t~l~~ 290 (359)
T PLN02634 281 IVYAYTYFDA 290 (359)
T ss_pred EEEEecccCC
Confidence 7777777765
No 45
>PLN02432 putative pectinesterase
Probab=97.09 E-value=0.062 Score=54.77 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=66.6
Q ss_pred EEeeecEEEEeeEEeeCCCCC----ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCC
Q 009075 258 FMYTDNIQISSLTLLNSPSWN----VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 333 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~~----i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg 333 (544)
....+++..+||+|+|...-. -.....+.+.+.+|+|.... |-+... ...-..+||+|...=|=| .+
T Consensus 90 ~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~Q-----DTLy~~-~gr~yf~~c~I~G~VDFI-FG-- 160 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQ-----DTLLDD-TGRHYYRNCYIEGATDFI-CG-- 160 (293)
T ss_pred EEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccc-----ceeEEC-CCCEEEEeCEEEecccEE-ec--
Confidence 345678899999999874311 11124566777777777533 323222 234566777776544432 11
Q ss_pred CCccCccccCceeeEEEEEEEEeCCC--CceEEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecCCC-CceeeEEEEe
Q 009075 334 WDEYGIAYGMPTKQLVIRRLTCISPY--SATIALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVKDIYVRG 409 (544)
Q Consensus 334 ~~~~G~~~~~~s~nI~I~n~~~~~~~--~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~nI~~~n 409 (544)
.-...+++|++.... ...|.--+ .....-....|.||++.+.. +..-|+. +.-..+.|.|
T Consensus 161 -----------~g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g-----~~yLGRpW~~~srvvf~~ 224 (293)
T PLN02432 161 -----------NAASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTGAG-----TTYLGRPWGPYSRVVFAL 224 (293)
T ss_pred -----------CceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcccc-----hhhccCCCCCccEEEEEe
Confidence 233566777665321 01222211 11122335677777776431 1122222 2345666666
Q ss_pred eEecc
Q 009075 410 MTMHT 414 (544)
Q Consensus 410 i~~~~ 414 (544)
..|.+
T Consensus 225 t~l~~ 229 (293)
T PLN02432 225 SYMSS 229 (293)
T ss_pred cccCC
Confidence 66655
No 46
>PLN02497 probable pectinesterase
Probab=97.07 E-value=0.093 Score=54.36 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=69.8
Q ss_pred EEeeecEEEEeeEEeeCCCCCc------------cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCC
Q 009075 258 FMYTDNIQISSLTLLNSPSWNV------------HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGD 325 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~~i------------~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gD 325 (544)
....+++..+|++|.|+..+.. .....+...+.+|++.... |-+... ...-..++|+|...=
T Consensus 111 ~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~V 184 (331)
T PLN02497 111 STLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQ-----DTLWDS-DGRHYFKRCTIQGAV 184 (331)
T ss_pred EEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccc-----cceeeC-CCcEEEEeCEEEecc
Confidence 3456788889999988753211 1124667777777777643 333222 234567777777644
Q ss_pred ceeeccCCCCccCccccCceeeEEEEEEEEeCCCC-------ceEEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecC
Q 009075 326 DCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS-------ATIALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVG 397 (544)
Q Consensus 326 D~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~-------~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g 397 (544)
|=| . | .-...++||++..-.. ..|.--+ ..........|.||++.+.. -+ +-|
T Consensus 185 DFI-F--G-----------~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~----yLG 245 (331)
T PLN02497 185 DFI-F--G-----------SGQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTG-SA----YLG 245 (331)
T ss_pred cEE-c--c-----------CceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccCC-CE----EEe
Confidence 422 1 1 2345777777763210 1122211 12223346677788877642 11 112
Q ss_pred CC-CceeeEEEEeeEecc
Q 009075 398 RG-GYVKDIYVRGMTMHT 414 (544)
Q Consensus 398 ~~-g~v~nI~~~ni~~~~ 414 (544)
+. +.-..+.|.+..|.+
T Consensus 246 RPW~~ysrvvf~~t~m~~ 263 (331)
T PLN02497 246 RPWRGYSRVLFYNSNLTD 263 (331)
T ss_pred CCCCCCceEEEEecccCC
Confidence 22 223567777777766
No 47
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.94 E-value=0.22 Score=53.02 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred eEEEEeeecEEEEeeEEeeCCCCCc---------cccCCeeEEEEeeEEECCCCCCCC------CCCCCCCcccEEEEcc
Q 009075 255 LMEFMYTDNIQISSLTLLNSPSWNV---------HPVYSSNILVQGITIIAPVTSPNT------DGINPDSCTNTRIEDC 319 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~~~i---------~~~~~~nv~I~~~~I~~~~~~~n~------DGI~~~~s~nV~I~n~ 319 (544)
.-.....++++.+||+|.|+..... .....+.+.+.+|+|....+---. .+...+......+++|
T Consensus 199 ATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~C 278 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNS 278 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeC
Confidence 4455688999999999999854321 123467788888888875432111 1111112235777888
Q ss_pred EEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC----ce-EEEcccccCCeEEEEEEeeEEEcC
Q 009075 320 YIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS----AT-IALGSEMSGGIQDVRAEDIKAINT 386 (544)
Q Consensus 320 ~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~----~g-IsIGs~~~g~v~nI~v~n~~~~~~ 386 (544)
+|...=|=| . | .-...++||++..-.. .| |.-.+.....-..++|.||+|.+.
T Consensus 279 yIeG~VDFI-F--G-----------~g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 279 YIEGDVDFV-F--G-----------RGAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EEeecccEE-c--c-----------CceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 887644432 1 1 2345777777764210 12 111221222344678888888764
No 48
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.92 E-value=0.094 Score=57.57 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=80.1
Q ss_pred EEEEeeecEEEEeeEEeeCCCCC----cc-ccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWN----VH-PVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~----i~-~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|..... +- -...+...+.+|+|.... |-+.... ..-..++|+|...=|=|
T Consensus 299 T~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~IeGtVDFI-- 370 (530)
T PLN02933 299 TVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVHS-AKQFYRECDIYGTIDFI-- 370 (530)
T ss_pred EEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccCC-CceEEEeeEEeccccee--
Confidence 34456678899999999975421 11 235778888888888743 4444433 34578888888643422
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCceEE----EEeecCCC-
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESGVR----IKTAVGRG- 399 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~- 399 (544)
-| .-...++||.+..-. ...|.--+ .....-..+.|.||++.+...... .+++-|+.
T Consensus 371 -FG-----------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW 438 (530)
T PLN02933 371 -FG-----------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPW 438 (530)
T ss_pred -cc-----------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEeccCC
Confidence 11 234677888776421 01222222 122334578888888887532111 12333333
Q ss_pred CceeeEEEEeeEeccc
Q 009075 400 GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 400 g~v~nI~~~ni~~~~v 415 (544)
+.-..+.|.+..|.+.
T Consensus 439 ~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 439 RKYSRTVIIKSFIDDL 454 (530)
T ss_pred CCCceEEEEecccCCe
Confidence 3456778888777763
No 49
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.90 E-value=0.012 Score=56.82 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=78.2
Q ss_pred EEE-EeeecEEEEeeEEee---------------CCCCCccccCCeeEEEEeeEEECCCCC---CCCCC-CCCC-CcccE
Q 009075 256 MEF-MYTDNIQISSLTLLN---------------SPSWNVHPVYSSNILVQGITIIAPVTS---PNTDG-INPD-SCTNT 314 (544)
Q Consensus 256 i~~-~~~~nv~I~~v~i~n---------------s~~~~i~~~~~~nv~I~~~~I~~~~~~---~n~DG-I~~~-~s~nV 314 (544)
+.+ ..++||.|++++|++ .....+.+..+++|.|++|++...... ...|| +++. .+.+|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 489999999999998 245678889999999999999985211 11455 4553 57899
Q ss_pred EEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEEEcccccCCeEEEEEEeeEEEcC-CceEEEE
Q 009075 315 RIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINT-ESGVRIK 393 (544)
Q Consensus 315 ~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~-~~Gi~Ik 393 (544)
+|++|.|...+.+..+++. +.. ..... .++++.+|.|.+.....=.+. .+ .+.+-|+.+.+. ..++...
T Consensus 119 TiS~n~f~~~~k~~l~G~~-d~~--~~~~~-~~vT~hhN~f~~~~~R~P~~r----~G--~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSS-DSN--STDRG-LRVTFHHNYFANTNSRNPRVR----FG--YVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp EEES-EEEEEEETCEESSC-TTC--GGGTT-EEEEEES-EEEEEEE-TTEEC----SC--EEEEES-EEEEECSESEEEE
T ss_pred EEEchhccccccccccCCC-CCc--cccCC-ceEEEEeEEECchhhCCCccc----cc--EEEEEEeeeECCCCEEEEcc
Confidence 9999999986665555442 111 12222 899999999875331111221 12 588888877653 3455443
No 50
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.89 E-value=0.082 Score=58.73 Aligned_cols=140 Identities=14% Similarity=0.076 Sum_probs=81.5
Q ss_pred EEEEeeecEEEEeeEEeeCCCC--C--c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSW--N--V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~--~--i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|..+. + + .-...+...+.+|+|.... |-+... ...-..++|+|...=|=|
T Consensus 334 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 405 (566)
T PLN02713 334 TFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ-----DTLYTH-SLRQFYRECDIYGTVDFI-- 405 (566)
T ss_pred eEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC-----cceEEC-CCCEEEEeeEEeccccee--
Confidence 3344568899999999997432 1 1 1235778889999998743 434433 234678889887644432
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEE-cccccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIAL-GSEMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG- 399 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~- 399 (544)
-| .-...++||.+.... ...|.- |......-..+.|.||++....... ..+++-|+.
T Consensus 406 -FG-----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW 473 (566)
T PLN02713 406 -FG-----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPW 473 (566)
T ss_pred -cc-----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCC
Confidence 11 345688888886421 011222 2222334457889999998653211 122333333
Q ss_pred CceeeEEEEeeEeccc
Q 009075 400 GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 400 g~v~nI~~~ni~~~~v 415 (544)
..-..+.|.+..|.+.
T Consensus 474 ~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 474 KEYSRTVVMQSYIDGL 489 (566)
T ss_pred CCcceEEEEecccCCe
Confidence 3345677877777763
No 51
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.89 E-value=0.012 Score=60.32 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=70.9
Q ss_pred EEeeecEEEEeeEEeeCCCC------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 258 FMYTDNIQISSLTLLNSPSW------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
....++++++||+|.|+... .+. ...+.+.+.+|+|.... |-+... ..+..+.||+|...-|=|- +
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~Q-----DTL~~~-~~r~y~~~c~IeG~vDFIf-G 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQ-----DTLYAN-GGRQYFKNCYIEGNVDFIF-G 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-ST-----T-EEE--SSEEEEES-EEEESEEEEE-E
T ss_pred cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcccc-----ceeeec-cceeEEEeeEEEecCcEEE-C
Confidence 34578999999999997432 222 35678889999998743 434333 3457788999887656442 1
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCCC----ce-EEE-cccccCCeEEEEEEeeEEEcCCc--------eEEEE-eec
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPYS----AT-IAL-GSEMSGGIQDVRAEDIKAINTES--------GVRIK-TAV 396 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~~----~g-IsI-Gs~~~g~v~nI~v~n~~~~~~~~--------Gi~Ik-t~~ 396 (544)
.....++||++..... .| |.- +......-..++|.||++..... ...+. .|
T Consensus 155 -------------~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW- 220 (298)
T PF01095_consen 155 -------------NGTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPW- 220 (298)
T ss_dssp -------------SSEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--S-
T ss_pred -------------CeeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecCcc-
Confidence 2345788888874320 12 222 21222345578899999987532 12221 22
Q ss_pred CCCCceeeEEEEeeEeccc
Q 009075 397 GRGGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 397 g~~g~v~nI~~~ni~~~~v 415 (544)
+.-..+.|.|+.|.+.
T Consensus 221 ---~~~s~vvf~~t~m~~~ 236 (298)
T PF01095_consen 221 ---GPYSRVVFINTYMDDH 236 (298)
T ss_dssp ---SEETEEEEES-EE-TT
T ss_pred ---cceeeEEEEccccCCe
Confidence 2345688888888874
No 52
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=96.86 E-value=0.11 Score=56.86 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=76.6
Q ss_pred eEEEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceee
Q 009075 255 LMEFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVA 329 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Ia 329 (544)
.-.....+++..+|++|.|..... + .....+...+.+|+|.... |-+... ..+-..++|+|...=|=|
T Consensus 306 aTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI- 378 (529)
T PLN02170 306 ATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ-----DSLYTH-SKRQFYRETDITGTVDFI- 378 (529)
T ss_pred eEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC-----CcceeC-CCCEEEEeeEEcccccee-
Confidence 345566778999999999984321 1 1235777888888888643 334333 234567888887644422
Q ss_pred ccCCCCccCccccCceeeEEEEEEEEeCCCC---ce-EEE-cccccCCeEEEEEEeeEEEcCCceEEEEeecCCC-Ccee
Q 009075 330 VKSGWDEYGIAYGMPTKQLVIRRLTCISPYS---AT-IAL-GSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVK 403 (544)
Q Consensus 330 i~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~---~g-IsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~ 403 (544)
-| .-...++||.+..... .| |.- |......-..+.|.||++.+.. +++-|+. +.-.
T Consensus 379 --FG-----------~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~-----~~yLGRPW~~ys 440 (529)
T PLN02170 379 --FG-----------NSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES-----MTYLGRPWKEYS 440 (529)
T ss_pred --cc-----------cceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC-----ceeeeCCCCCCc
Confidence 11 2346777777764321 11 221 1112233456788888887753 2222332 2345
Q ss_pred eEEEEeeEecc
Q 009075 404 DIYVRGMTMHT 414 (544)
Q Consensus 404 nI~~~ni~~~~ 414 (544)
.+.|.+..|.+
T Consensus 441 rvVf~~t~l~~ 451 (529)
T PLN02170 441 RTVVMQSFIDG 451 (529)
T ss_pred eEEEEecccCC
Confidence 67777777765
No 53
>PLN02304 probable pectinesterase
Probab=96.83 E-value=0.11 Score=54.55 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=67.6
Q ss_pred EEeeecEEEEeeEEeeCCCC---------C-ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCce
Q 009075 258 FMYTDNIQISSLTLLNSPSW---------N-VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDC 327 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~---------~-i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ 327 (544)
....+++..+||+|.|+... . -.....+...+.+|+|.... |-+... ...-..+||+|...=|=
T Consensus 158 ~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~Q-----DTLy~~-~gR~Yf~~CyIeG~VDF 231 (379)
T PLN02304 158 QVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQ-----DTLHDD-RGRHYFKDCYIQGSIDF 231 (379)
T ss_pred EEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEeccc-----ceeEeC-CCCEEEEeeEEcccccE
Confidence 34467888888888887421 0 11124677777777777643 223222 23456777777764342
Q ss_pred eeccCCCCccCccccCceeeEEEEEEEEeCCCC----------ceEEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeec
Q 009075 328 VAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS----------ATIALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAV 396 (544)
Q Consensus 328 Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~----------~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~ 396 (544)
| .+ .-...+++|++..... ..|.--+ .....-....|.||++.+.. - .+-
T Consensus 232 I-FG-------------~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~g-~----vyL 292 (379)
T PLN02304 232 I-FG-------------DARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTG-R----IWL 292 (379)
T ss_pred E-ec-------------cceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccCc-c----eee
Confidence 2 11 2344677777764210 0122111 11223346677777776532 1 122
Q ss_pred CCC-CceeeEEEEeeEecc
Q 009075 397 GRG-GYVKDIYVRGMTMHT 414 (544)
Q Consensus 397 g~~-g~v~nI~~~ni~~~~ 414 (544)
|+. +.-..+.|.+..|.+
T Consensus 293 GRPW~pysrvVf~~t~m~~ 311 (379)
T PLN02304 293 GRAWRPYSRVVFAYTSMTD 311 (379)
T ss_pred cCCCCCcceEEEEecccCC
Confidence 222 234567777777665
No 54
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.79 E-value=0.14 Score=56.91 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=76.4
Q ss_pred EEEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|..+-. + .-...+.+.+.+|+|.... |-+...+ ..-..++|+|...=|=| +
T Consensus 324 T~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~~-~rq~y~~C~I~GtVDFI-F 396 (553)
T PLN02708 324 TVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ-----DTLYAHS-LRQFYKSCRIQGNVDFI-F 396 (553)
T ss_pred EEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceeCC-CceEEEeeEEeecCCEE-e
Confidence 34445678999999999985421 1 1235677888888888643 3343332 34567888887644422 1
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCC------C---CceEEE-cccccCCeEEEEEEeeEEEcCCceE--------EE
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISP------Y---SATIAL-GSEMSGGIQDVRAEDIKAINTESGV--------RI 392 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~------~---~~gIsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi--------~I 392 (544)
| .-...++||.+... . ...|.. |......-..+.|.||++.+...-. .-
T Consensus 397 --G-----------~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~ 463 (553)
T PLN02708 397 --G-----------NSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVH 463 (553)
T ss_pred --c-----------CceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCCccccccccccccc
Confidence 1 34567777777631 0 112322 1122233456788888887653211 01
Q ss_pred EeecCCC-CceeeEEEEeeEecc
Q 009075 393 KTAVGRG-GYVKDIYVRGMTMHT 414 (544)
Q Consensus 393 kt~~g~~-g~v~nI~~~ni~~~~ 414 (544)
+++-|+. +.-..+.|-+..|.+
T Consensus 464 ~~yLGRPW~~ysr~V~~~s~l~~ 486 (553)
T PLN02708 464 KNFLGRPWKEYSRTVFIGCNLEA 486 (553)
T ss_pred ceeeecCCCCcceEEEEecccCC
Confidence 2222333 334567777777665
No 55
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.79 E-value=0.14 Score=56.22 Aligned_cols=140 Identities=11% Similarity=0.037 Sum_probs=77.7
Q ss_pred EEEEeeecEEEEeeEEeeCCCC--C--c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSW--N--V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~--~--i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|+..- + + .....+...+.+|+|.... |-+.... .+-..++|+|...=|=| +
T Consensus 287 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F 359 (520)
T PLN02201 287 TFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-----DTLYTHT-MRQFYRECRITGTVDFI-F 359 (520)
T ss_pred EEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----CeeEeCC-CCEEEEeeEEeecccEE-e
Confidence 3445577888999999998542 1 1 1134677888888888643 3343332 34566888887644432 1
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG- 399 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~- 399 (544)
| .-...++||++.... ...|.--+ .....-..+.|.||++.+..... ..+++-|+.
T Consensus 360 --G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW 426 (520)
T PLN02201 360 --G-----------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPW 426 (520)
T ss_pred --c-----------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCC
Confidence 1 244677888777421 01232222 12233456888888887643211 112233333
Q ss_pred CceeeEEEEeeEeccc
Q 009075 400 GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 400 g~v~nI~~~ni~~~~v 415 (544)
+.-..+.|-+..|.++
T Consensus 427 ~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 427 KLYSRTVFMQNYMSDA 442 (520)
T ss_pred CCCceEEEEecCcCCe
Confidence 3456677777777763
No 56
>PLN02671 pectinesterase
Probab=96.79 E-value=0.15 Score=53.36 Aligned_cols=132 Identities=13% Similarity=0.151 Sum_probs=70.1
Q ss_pred EEEeeecEEEEeeEEeeCCCC----------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCc
Q 009075 257 EFMYTDNIQISSLTLLNSPSW----------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDD 326 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~----------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD 326 (544)
.....+++..+||+|.|.... .+. ...+.+.+.+|+|.... |-+... ...-..+||+|...=|
T Consensus 149 v~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALr-v~gDra~f~~c~f~G~Q-----DTLy~~-~gR~yf~~CyIeG~VD 221 (359)
T PLN02671 149 VTIESDYFCATGITFENTVVAEPGGQGMQAVALR-ISGDKAFFYKVRVLGAQ-----DTLLDE-TGSHYFYQCYIQGSVD 221 (359)
T ss_pred EEEECCceEEEeeEEEcCCCCCCCCCCccEEEEE-EcCccEEEEcceEeccc-----cccEeC-CCcEEEEecEEEEecc
Confidence 445567888888888887311 111 24677777888887643 323222 2345677788776444
Q ss_pred eeeccCCCCccCccccCceeeEEEEEEEEeCCC--CceEEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecCCC-Cce
Q 009075 327 CVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY--SATIALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYV 402 (544)
Q Consensus 327 ~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~--~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v 402 (544)
=| . | .-...++||++.... ...|.--+ .....-....|.||++.+.. -+.+ |+. +.-
T Consensus 222 FI-F--G-----------~g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~vyL----GRPW~~y 282 (359)
T PLN02671 222 FI-F--G-----------NAKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGTG-KIYL----GRAWGNY 282 (359)
T ss_pred EE-e--c-----------ceeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccCc-cEEE----eCCCCCC
Confidence 33 1 1 234577777776421 01222222 11223346778888886642 1212 222 233
Q ss_pred eeEEEEeeEecc
Q 009075 403 KDIYVRGMTMHT 414 (544)
Q Consensus 403 ~nI~~~ni~~~~ 414 (544)
..+.|.|..|.+
T Consensus 283 arvVf~~t~m~~ 294 (359)
T PLN02671 283 SRTVYSNCFIAD 294 (359)
T ss_pred ceEEEEecccCC
Confidence 567777777766
No 57
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.78 E-value=0.093 Score=59.13 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=84.8
Q ss_pred EEEeeecEEEEeeEEeeCCCC----Cc-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSW----NV-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.....+++..+|++|.|...- .+ .....+...+.+|+|.... |-+... ..+-..++|+|...=|=| +
T Consensus 332 ~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-F- 403 (670)
T PLN02217 332 VAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAH-SHRQFYRDCTISGTIDFL-F- 403 (670)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccC-CCcEEEEeCEEEEeccEE-e-
Confidence 344577899999999998541 11 1235788999999998743 444443 345688999998744432 1
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCCC----ce-EEE-cccccCCeEEEEEEeeEEEcCCceEE----EEeecCCC-C
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPYS----AT-IAL-GSEMSGGIQDVRAEDIKAINTESGVR----IKTAVGRG-G 400 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~~----~g-IsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~-g 400 (544)
| .-...++||.+..... .+ |.- |......-..+.|.||++.+...-+. .+++-||. +
T Consensus 404 -G-----------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~ 471 (670)
T PLN02217 404 -G-----------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWK 471 (670)
T ss_pred -c-----------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCCC
Confidence 2 2456888888874310 11 221 11222344579999999988642111 23333443 4
Q ss_pred ceeeEEEEeeEeccc
Q 009075 401 YVKDIYVRGMTMHTM 415 (544)
Q Consensus 401 ~v~nI~~~ni~~~~v 415 (544)
.-..+.|.+..|.+.
T Consensus 472 ~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 472 EYSRTIIMNTFIPDF 486 (670)
T ss_pred CCceEEEEecccCCe
Confidence 457788888888774
No 58
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.78 E-value=0.13 Score=57.20 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=80.6
Q ss_pred EEEeeecEEEEeeEEeeCCCCC-----ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSWN-----VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~~-----i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.....+++..+|++|.|..+-. -.....+...+.+|+|.... |-+...+ ..-..++|+|...=|=|
T Consensus 340 ~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rq~y~~C~I~GtvDFI--- 410 (565)
T PLN02468 340 FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-----DTLYAHA-QRQFYRECNIYGTVDFI--- 410 (565)
T ss_pred eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-----chhccCC-CceEEEeeEEeccccee---
Confidence 3445678999999999975421 11235778888888888744 4444443 34568888887643422
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEc-ccccCCeEEEEEEeeEEEcCCceEEEEeecCCC-Cceee
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALG-SEMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVKD 404 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIG-s~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~n 404 (544)
-| .-...++||.+.... ...|.-- ......-..+.|.||++......-..+++-|+. +.-..
T Consensus 411 FG-----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr 479 (565)
T PLN02468 411 FG-----------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYST 479 (565)
T ss_pred ec-----------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCce
Confidence 11 345678888876321 0123222 122234457888899888753322233443443 33456
Q ss_pred EEEEeeEecc
Q 009075 405 IYVRGMTMHT 414 (544)
Q Consensus 405 I~~~ni~~~~ 414 (544)
+.|-+..|.+
T Consensus 480 ~v~~~s~~~~ 489 (565)
T PLN02468 480 TVIMHSMMGS 489 (565)
T ss_pred EEEEecccCC
Confidence 7777777766
No 59
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.74 E-value=0.13 Score=56.84 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=70.6
Q ss_pred EEEEeeecEEEEeeEEeeCCCCC-----ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWN-----VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~-----i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|..... -.....+.+.+.+|+|.... |-+.... ..-..++|+|...=|=| +
T Consensus 313 T~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q-----DTLy~~~-~rqyy~~C~I~GtVDFI-F 385 (537)
T PLN02506 313 TVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ-----DTLYAHS-LRQFYRECEIYGTIDFI-F 385 (537)
T ss_pred EEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc-----ccceecC-CceEEEeeEEecccceE-c
Confidence 34567788999999999985321 11134677777777777643 3333322 33567777777543322 1
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecCCC-Ccee
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVK 403 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~ 403 (544)
| .-...++||.+.... ...|.--+ .....-..+.|.||++.+.. +++-|+. +.-.
T Consensus 386 --G-----------~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~-----~~yLGRPW~~~s 447 (537)
T PLN02506 386 --G-----------NGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQ-----PTYLGRPWKQYS 447 (537)
T ss_pred --c-----------CceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccCC-----ceEEecCCCCCc
Confidence 1 234577777776421 01222211 11223346777777776542 1222222 3345
Q ss_pred eEEEEeeEecc
Q 009075 404 DIYVRGMTMHT 414 (544)
Q Consensus 404 nI~~~ni~~~~ 414 (544)
.++|-+..|.+
T Consensus 448 r~v~~~t~l~~ 458 (537)
T PLN02506 448 RTVFMNTYMSQ 458 (537)
T ss_pred eEEEEecCCCC
Confidence 56666666665
No 60
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.67 E-value=0.22 Score=55.67 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=81.0
Q ss_pred EEEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|...-. + .....+...+.+|+|.... |-+... ...-..++|+|...=|=|
T Consensus 354 T~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 425 (587)
T PLN02484 354 SFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----DTLYVH-SNRQFFRECDIYGTVDFI-- 425 (587)
T ss_pred EEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----cccccC-CCcEEEEecEEEecccee--
Confidence 34456678889999999875321 1 1235778888888888743 444443 334578888888643422
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCce----EEEEeecCCC-
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESG----VRIKTAVGRG- 399 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~G----i~Ikt~~g~~- 399 (544)
-| .-...++||++.... ..-|.--+ .....-..+.|.||++.+...- -..+++-|+.
T Consensus 426 -FG-----------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW 493 (587)
T PLN02484 426 -FG-----------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPW 493 (587)
T ss_pred -cc-----------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCC
Confidence 11 345688888887421 01222222 1222345788999998775321 0123333443
Q ss_pred CceeeEEEEeeEeccc
Q 009075 400 GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 400 g~v~nI~~~ni~~~~v 415 (544)
+.-..+.|.+..|.+.
T Consensus 494 ~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 494 KLYSRTVYMMSYMGDH 509 (587)
T ss_pred CCCceEEEEecccCCe
Confidence 3456778888777763
No 61
>PLN02665 pectinesterase family protein
Probab=96.63 E-value=0.14 Score=53.72 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=75.7
Q ss_pred EEEEeeecEEEEeeEEeeCCCC-----------CccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecC
Q 009075 256 MEFMYTDNIQISSLTLLNSPSW-----------NVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSG 324 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~-----------~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~g 324 (544)
-....++++..+|++|+|+... .+. ...+...+.+|++.... |-+... ..+-..++|+|...
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~-v~gDka~f~~C~f~G~Q-----DTL~~~-~gr~yf~~CyIeG~ 220 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMR-ISGDKAAFYNCRFIGFQ-----DTLCDD-KGRHFFKDCYIEGT 220 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEE-EcCCcEEEEcceecccc-----ceeEeC-CCCEEEEeeEEeec
Confidence 3455678899999999987421 111 24677888888887643 333222 23466788888765
Q ss_pred CceeeccCCCCccCccccCceeeEEEEEEEEeCCCCce----EEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecCCC
Q 009075 325 DDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAT----IALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG 399 (544)
Q Consensus 325 DD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~g----IsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~ 399 (544)
=|=| . | .-...+++|++.... .+ |.--+ .....-....|.||++.+....+.+ |+.
T Consensus 221 VDFI-F--G-----------~g~a~fe~C~i~s~~-~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yL----GRp 281 (366)
T PLN02665 221 VDFI-F--G-----------SGKSLYLNTELHVVG-DGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYL----GRA 281 (366)
T ss_pred ccee-c--c-----------ccceeeEccEEEEec-CCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceee----cCC
Confidence 4433 1 1 234577777777532 22 22211 1112334678888888775322222 222
Q ss_pred -CceeeEEEEeeEeccc
Q 009075 400 -GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 400 -g~v~nI~~~ni~~~~v 415 (544)
+.-..+.|.+..|.+.
T Consensus 282 W~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 282 WMSRPRVVFAYTEMSSV 298 (366)
T ss_pred CCCcceEEEEccccCCe
Confidence 3345688888887763
No 62
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.62 E-value=0.21 Score=55.29 Aligned_cols=141 Identities=8% Similarity=-0.019 Sum_probs=83.4
Q ss_pred eEEEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceee
Q 009075 255 LMEFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVA 329 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Ia 329 (544)
+-.....+++..+|++|+|..+.. + .....+...+.+|+|.... |-+...+ ..-..+||+|...=|=|
T Consensus 306 aT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ-----DTLy~~~-~rq~y~~c~I~GtVDFI- 378 (538)
T PLN03043 306 STFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ-----DTLYVHS-LRQFYRECDIYGTVDFI- 378 (538)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC-----cccccCC-CcEEEEeeEEeeccceE-
Confidence 344556688999999999975421 1 1235778889999998744 4444443 44678889888654432
Q ss_pred ccCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCceE----EEEeecCCC
Q 009075 330 VKSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG 399 (544)
Q Consensus 330 i~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~ 399 (544)
+ | .-...++||++.... ...|...+ .....-..+.|.||++.+...-. ..+++-|+.
T Consensus 379 F--G-----------~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRp 445 (538)
T PLN03043 379 F--G-----------NAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRP 445 (538)
T ss_pred e--e-----------cceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCcccccccccceeccCC
Confidence 1 1 345688888886421 12233321 22233457889999998753210 123333443
Q ss_pred -CceeeEEEEeeEeccc
Q 009075 400 -GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 400 -g~v~nI~~~ni~~~~v 415 (544)
..-..+.|-+..|.+.
T Consensus 446 W~~ysr~v~~~s~i~~~ 462 (538)
T PLN03043 446 WKPYSRTVYMQSYIGDL 462 (538)
T ss_pred CCCCceEEEEecccCCe
Confidence 3356677777777763
No 63
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.60 E-value=0.22 Score=55.12 Aligned_cols=139 Identities=15% Similarity=0.124 Sum_probs=80.1
Q ss_pred EEEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|..+.. + .-...+...+.+|+|.... |-+...+ ..-..+||+|...=|=|
T Consensus 317 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-- 388 (548)
T PLN02301 317 TVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ-----DTLYAHS-LRQFYRDSYITGTVDFI-- 388 (548)
T ss_pred EEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceecC-CcEEEEeeEEEecccee--
Confidence 44456678999999999975421 1 1235778888888888744 3343333 34578888888654432
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCCC-----ceEEE-cccccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPYS-----ATIAL-GSEMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG- 399 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~-----~gIsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~- 399 (544)
-| .-...++||++..... .-|.- |......-..+.|.||++.+...-. ..+++-|+.
T Consensus 389 -FG-----------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW 456 (548)
T PLN02301 389 -FG-----------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPW 456 (548)
T ss_pred -cc-----------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCccccccccccceeeecCC
Confidence 11 3456788888764210 11322 2222334457888899888753211 122333333
Q ss_pred CceeeEEEEeeEecc
Q 009075 400 GYVKDIYVRGMTMHT 414 (544)
Q Consensus 400 g~v~nI~~~ni~~~~ 414 (544)
..-..+.|.+..|.+
T Consensus 457 ~~ysr~V~~~s~l~~ 471 (548)
T PLN02301 457 KEYSRTVVMQSYIDD 471 (548)
T ss_pred CCCceEEEEecccCC
Confidence 335667777777765
No 64
>PLN02916 pectinesterase family protein
Probab=96.54 E-value=0.26 Score=53.79 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=78.0
Q ss_pred eEEEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceee
Q 009075 255 LMEFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVA 329 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Ia 329 (544)
+-.....+++..+|++|.|..... + .-...+...+.+|+|.... |-+...+ .+-..++|+|...=|=|
T Consensus 270 AT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI- 342 (502)
T PLN02916 270 ATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQ-----DTLFVHS-LRQFYRDCHIYGTIDFI- 342 (502)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccC-----ceeEeCC-CCEEEEecEEeccccee-
Confidence 344456678889999999874321 1 1125677888888888643 3333332 34567888887644422
Q ss_pred ccCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCceE----EEEeecCCC
Q 009075 330 VKSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG 399 (544)
Q Consensus 330 i~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~ 399 (544)
-| .-...++||.+.... ..-|.-.+ .....-..+.|.||++.+..... ..+++-|+.
T Consensus 343 --FG-----------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRP 409 (502)
T PLN02916 343 --FG-----------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRP 409 (502)
T ss_pred --cc-----------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecC
Confidence 11 345677777776421 01222211 12233457888888887653111 122333333
Q ss_pred -CceeeEEEEeeEeccc
Q 009075 400 -GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 400 -g~v~nI~~~ni~~~~v 415 (544)
+.-..+.|.+..|.+.
T Consensus 410 W~~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 410 WKKYSRTVFLKTDLDGL 426 (502)
T ss_pred CCCCceEEEEecccCCe
Confidence 3456677777777763
No 65
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.51 E-value=0.2 Score=55.37 Aligned_cols=138 Identities=15% Similarity=0.134 Sum_probs=77.4
Q ss_pred EEEeeecEEEEeeEEeeCCCCC-----ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSWN-----VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~~-----i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.....+++..+|++|.|..... -.....+.+.+.+|+|.... |-+... +.+-..++|+|...=|=| +
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-F- 383 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ-----DTLYVH-SFRQFYRECDIYGTIDYI-F- 383 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc-----chhccC-CCceEEEeeEEeecccee-e-
Confidence 3445788999999999985421 11134677888888888744 334333 345578888887644432 1
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCCC----ce-EEEcc-cccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-C
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPYS----AT-IALGS-EMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG-G 400 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~~----~g-IsIGs-~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~-g 400 (544)
| .-...++||++..... .+ |.--+ .....-..+.|.||++.+...-. ..+++-|+. +
T Consensus 384 -G-----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~ 451 (541)
T PLN02416 384 -G-----------NAAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWR 451 (541)
T ss_pred -c-----------cceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecCCccccccccccccccCCCC
Confidence 1 3456777887764210 01 11111 11223457888888887653110 123333433 3
Q ss_pred ceeeEEEEeeEecc
Q 009075 401 YVKDIYVRGMTMHT 414 (544)
Q Consensus 401 ~v~nI~~~ni~~~~ 414 (544)
.-..+.|.+..|.+
T Consensus 452 ~~sr~v~~~s~i~~ 465 (541)
T PLN02416 452 VYSRTVVLESYIDD 465 (541)
T ss_pred CCccEEEEecccCC
Confidence 34567777777766
No 66
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.47 E-value=0.25 Score=55.23 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=76.6
Q ss_pred EEEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|+|..+.. + .....+...+.+|+|.... |-+...+ .+-..++|+|...=|=| +
T Consensus 356 t~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-----DTLy~~~-~rq~y~~c~I~GtvDFI-F 428 (587)
T PLN02313 356 TVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-----DTLYVHS-NRQFFVKCHITGTVDFI-F 428 (587)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-----chhccCC-CcEEEEeeEEeecccee-c
Confidence 34456678999999999985421 1 1235677788888888643 4444433 34577888887644432 1
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC----C-ceEEE-cccccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY----S-ATIAL-GSEMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG- 399 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~----~-~gIsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~- 399 (544)
| .-...++||.+.... . ..|.- |......-..+.|.||++.+...-. ..+++-|+.
T Consensus 429 --G-----------~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRPW 495 (587)
T PLN02313 429 --G-----------NAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPW 495 (587)
T ss_pred --c-----------ceeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCCccccccccchhhccCCC
Confidence 1 345677787776421 0 11222 2222233457888888887653211 122333333
Q ss_pred CceeeEEEEeeEecc
Q 009075 400 GYVKDIYVRGMTMHT 414 (544)
Q Consensus 400 g~v~nI~~~ni~~~~ 414 (544)
..-..+.|-+..|.+
T Consensus 496 ~~ysr~v~~~s~i~~ 510 (587)
T PLN02313 496 KEYSRTVIMQSDISD 510 (587)
T ss_pred CCCccEEEEecccCC
Confidence 334556666666665
No 67
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.43 E-value=0.29 Score=54.18 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=76.6
Q ss_pred EEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccC
Q 009075 258 FMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 332 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~s 332 (544)
....+++..+|++|.|..... + .....+...+.+|+|.... |-+.... ..-..++|+|...=|=| +
T Consensus 308 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F-- 378 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ-----DTLMVHS-QRQFYRECYIYGTVDFI-F-- 378 (539)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEeccc-----chhccCC-CceEEEeeEEeeccceE-e--
Confidence 345678888999999875421 1 1235677888888888643 3343332 34577888887643422 1
Q ss_pred CCCccCccccCceeeEEEEEEEEeCCCC-----ceEEEcc-cccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-Cc
Q 009075 333 GWDEYGIAYGMPTKQLVIRRLTCISPYS-----ATIALGS-EMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG-GY 401 (544)
Q Consensus 333 g~~~~G~~~~~~s~nI~I~n~~~~~~~~-----~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~-g~ 401 (544)
| .....++||++..... .-|.--+ .....-..+.|.||++.+..... ..+++-|+. +.
T Consensus 379 G-----------~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 447 (539)
T PLN02995 379 G-----------NAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMK 447 (539)
T ss_pred c-----------ccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCC
Confidence 1 2345777777764210 1122111 12223457888888887753211 123333443 33
Q ss_pred eeeEEEEeeEeccc
Q 009075 402 VKDIYVRGMTMHTM 415 (544)
Q Consensus 402 v~nI~~~ni~~~~v 415 (544)
-..+.|-+..|.+.
T Consensus 448 ysrvv~~~t~~~~~ 461 (539)
T PLN02995 448 FSRTVVLQTYLDNV 461 (539)
T ss_pred CcceEEEeccccCc
Confidence 45577777777663
No 68
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.41 E-value=0.36 Score=54.03 Aligned_cols=139 Identities=12% Similarity=0.085 Sum_probs=81.9
Q ss_pred EEEEeeecEEEEeeEEeeCCCC--C--c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSW--N--V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~--~--i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|...- + + ....++...+.+|+|.... |-+... ..+-..++|+|...=|=| +
T Consensus 366 T~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-F 438 (596)
T PLN02745 366 TFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ-----DTLYAQ-THRQFYRSCVITGTIDFI-F 438 (596)
T ss_pred EEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc-----cccccC-CCcEEEEeeEEEeeccEE-e
Confidence 3344678899999999997431 1 1 1235788889999998744 334333 345678889888654422 1
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG- 399 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~- 399 (544)
| .-...++||.+.... ..-|.-.+ .....-..+.|.||++.+..... ..+++-|+.
T Consensus 439 --G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW 505 (596)
T PLN02745 439 --G-----------DAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPW 505 (596)
T ss_pred --c-----------ceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCC
Confidence 1 345688888887431 01222221 12223457889999998753211 123333443
Q ss_pred CceeeEEEEeeEecc
Q 009075 400 GYVKDIYVRGMTMHT 414 (544)
Q Consensus 400 g~v~nI~~~ni~~~~ 414 (544)
+.-..+.|.+..|.+
T Consensus 506 ~~ysrvv~~~s~l~~ 520 (596)
T PLN02745 506 KEFSRTIVMESTIED 520 (596)
T ss_pred CCCccEEEEecccCC
Confidence 345667777777776
No 69
>PLN02314 pectinesterase
Probab=96.36 E-value=0.29 Score=54.78 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=79.7
Q ss_pred EEEEeeecEEEEeeEEeeCCCCC-----ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeec
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWN-----VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 330 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~-----i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai 330 (544)
-.....+++..+|++|.|..+-. -.....+...+.+|+|.... |-+...+ ..-..++|+|...=|=|
T Consensus 359 T~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----DTLy~~~-~rq~y~~C~I~GtvDFI-- 430 (586)
T PLN02314 359 TFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----DTLYAHS-NRQFYRDCDITGTIDFI-- 430 (586)
T ss_pred EEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----chheeCC-CCEEEEeeEEEecccee--
Confidence 34456778899999999985321 11235777888888888743 4343333 34577888887644422
Q ss_pred cCCCCccCccccCceeeEEEEEEEEeCCC-----CceEEEcc-cccCCeEEEEEEeeEEEcCCceEEEEeecCCC-Ccee
Q 009075 331 KSGWDEYGIAYGMPTKQLVIRRLTCISPY-----SATIALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVK 403 (544)
Q Consensus 331 ~sg~~~~G~~~~~~s~nI~I~n~~~~~~~-----~~gIsIGs-~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~ 403 (544)
-| .-...++||.+.... ...|.--+ .....-..+.|.||++.+... +..+++-|+. ..-.
T Consensus 431 -FG-----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ys 497 (586)
T PLN02314 431 -FG-----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFS 497 (586)
T ss_pred -cc-----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCc
Confidence 11 245678888776421 01222211 122334578888888887632 2233343443 3345
Q ss_pred eEEEEeeEeccc
Q 009075 404 DIYVRGMTMHTM 415 (544)
Q Consensus 404 nI~~~ni~~~~v 415 (544)
.+.|.+..|.+.
T Consensus 498 r~v~~~s~i~~~ 509 (586)
T PLN02314 498 TTVIMQSYIGSF 509 (586)
T ss_pred eEEEEecccCCc
Confidence 677777777663
No 70
>PLN02197 pectinesterase
Probab=96.22 E-value=0.42 Score=53.34 Aligned_cols=138 Identities=8% Similarity=0.056 Sum_probs=77.9
Q ss_pred EEEeeecEEEEeeEEeeCCCC----Cc-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSW----NV-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.....+++..+|++|.|.... .+ .....+...+.+|+|.... |-+.... .+-..++|+|...=|=|
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ-----DTLy~~~-~Rqyy~~C~I~GtVDFI--- 429 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ-----DTLYVNN-GRQFYRNIVVSGTVDFI--- 429 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-----cceEecC-CCEEEEeeEEEeccccc---
Confidence 445677899999999997542 11 1235778888888888743 3343332 34577888887643322
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCCC-ce----EEEcc-cc-cCCeEEEEEEeeEEEcCCc----eEEEEeecCCC-
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPYS-AT----IALGS-EM-SGGIQDVRAEDIKAINTES----GVRIKTAVGRG- 399 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~~-~g----IsIGs-~~-~g~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~- 399 (544)
-| .....++||++..... .| |.-.+ .. ...-..+.|.||++.+... ....+++-|+.
T Consensus 430 FG-----------~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW 498 (588)
T PLN02197 430 FG-----------KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPW 498 (588)
T ss_pred cc-----------ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCC
Confidence 11 2336788887763210 11 11111 11 1233468888888877532 11233444443
Q ss_pred CceeeEEEEeeEecc
Q 009075 400 GYVKDIYVRGMTMHT 414 (544)
Q Consensus 400 g~v~nI~~~ni~~~~ 414 (544)
..-..+.|-+..|.+
T Consensus 499 ~~ysrvV~~~s~~~~ 513 (588)
T PLN02197 499 KKFSTTVIISTEIGD 513 (588)
T ss_pred CCCceEEEEecccCC
Confidence 345667777777765
No 71
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.19 E-value=0.38 Score=53.66 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=79.1
Q ss_pred EEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.....+++..+|++|.|..+.. + .....+...+.+|+|.... |-+... +..-..++|+|...=|=| +
T Consensus 342 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-F- 413 (572)
T PLN02990 342 VAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ-----DTLYVH-SHRQFFRDCTVSGTVDFI-F- 413 (572)
T ss_pred EEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEecccceE-c-
Confidence 3345678899999999985421 1 1235778888888888643 444433 334567888888654432 1
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCC---C-ce-EEE-cccccCCeEEEEEEeeEEEcCCceEE----EEeecCCC-C
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPY---S-AT-IAL-GSEMSGGIQDVRAEDIKAINTESGVR----IKTAVGRG-G 400 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~---~-~g-IsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~-g 400 (544)
| .-...++||++.... + .+ |.- |......-..+.|.||++.+...... .+++-|+. +
T Consensus 414 -G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~ 481 (572)
T PLN02990 414 -G-----------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWK 481 (572)
T ss_pred -c-----------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCCC
Confidence 1 244678888876421 0 11 211 11122234578888998887542111 22333333 3
Q ss_pred ceeeEEEEeeEeccc
Q 009075 401 YVKDIYVRGMTMHTM 415 (544)
Q Consensus 401 ~v~nI~~~ni~~~~v 415 (544)
.-..+.|.+..|.+.
T Consensus 482 ~ysrvV~~~s~i~~~ 496 (572)
T PLN02990 482 EFSRTIIMGTTIDDV 496 (572)
T ss_pred CCceEEEEecccCCe
Confidence 346677777777763
No 72
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.15 E-value=0.58 Score=51.02 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=74.5
Q ss_pred EEEeeecEEEEeeEEeeCCCC--C--c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSW--N--V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~--~--i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.....+++..+|++|.|...- + + .....+...+.+|+|.... |-+... +.+-..++|+|...=|=| +
T Consensus 279 v~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ-----DTLy~~-~~RqyyrdC~I~GtVDFI-F- 350 (509)
T PLN02488 279 VASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ-----DALYPH-RDRQFYRECFITGTVDFI-C- 350 (509)
T ss_pred EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC-----cceeeC-CCCEEEEeeEEeeccceE-e-
Confidence 334566788888888887532 1 1 1134677788888887643 333333 345677888887643422 1
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCCC----ce-EEEcc-cccCCeEEEEEEeeEEEcCCceE----EEEeecCCC-C
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPYS----AT-IALGS-EMSGGIQDVRAEDIKAINTESGV----RIKTAVGRG-G 400 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~~----~g-IsIGs-~~~g~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~-g 400 (544)
| .-...++||.+..... .+ |.-.+ .....-..+.|.||++.+..... ..+++-|+. .
T Consensus 351 -G-----------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~ 418 (509)
T PLN02488 351 -G-----------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWR 418 (509)
T ss_pred -c-----------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCC
Confidence 1 3456777777764210 11 22111 11223346788888887653211 123333443 3
Q ss_pred ceeeEEEEeeEecc
Q 009075 401 YVKDIYVRGMTMHT 414 (544)
Q Consensus 401 ~v~nI~~~ni~~~~ 414 (544)
.-..+.|-+..|.+
T Consensus 419 ~ySrvVf~~s~i~~ 432 (509)
T PLN02488 419 KYSTVAVLQSFIGD 432 (509)
T ss_pred CCccEEEEeccCCC
Confidence 34556666666665
No 73
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=95.96 E-value=0.0075 Score=45.73 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=22.5
Q ss_pred ccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCC-eEEeeeE
Q 009075 124 GVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAG-KWLTGSF 166 (544)
Q Consensus 124 a~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G-~Yl~g~i 166 (544)
|+|||.+|||+||.+|+++. ..|.++=-.| ||.+.++
T Consensus 1 A~GDGvtdDt~A~~a~l~a~------~~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS------PVGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-------TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhcc------CCCeEEecCCceEEEeeC
Confidence 68999999999999999974 3344444555 6877653
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.83 E-value=0.46 Score=49.94 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=35.5
Q ss_pred EEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCC-eEEe-eeEEEeeeeEEeeecCcEEEec
Q 009075 118 SITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAG-KWLT-GSFNLISHFTLYLHKDAFLLAS 185 (544)
Q Consensus 118 ~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G-~Yl~-g~i~l~S~~tl~l~~ga~l~~~ 185 (544)
.|+.|=+.|+. | +..||+.- ++|.+-|| +|.+ .++.|++...+.. .||+++..
T Consensus 45 qvkt~~~~P~e--D----le~~I~~h--------aKVaL~Pg~~Y~i~~~V~I~~~cYIiG-nGA~V~v~ 99 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQH--------AKVALRPGAVYVIRKPVNIRSCCYIIG-NGATVRVN 99 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHhc--------CEEEeCCCCEEEEeeeEEecceEEEEC-CCEEEEEe
Confidence 45667677754 3 45555542 35676666 5976 5999999988744 58888754
No 75
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=95.34 E-value=1.2 Score=44.65 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=25.4
Q ss_pred eeEEEEeeEecccce-eE---EEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEc
Q 009075 403 KDIYVRGMTMHTMKW-AF---WMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEG 462 (544)
Q Consensus 403 ~nI~~~ni~~~~v~~-~i---~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g 462 (544)
.|..+.||.|.+... -| .|++.|-.-| .|..+.||+..+...+-.+.|
T Consensus 301 dnfvidni~mvnsagmligygvikg~ylsip------------qnfkln~i~ldn~~l~yklrg 352 (464)
T PRK10123 301 DNFVIDNIEMINSAGMLIGYGVIKGKYLSIP------------QNFKLNNIQLDNTHLAYKLRG 352 (464)
T ss_pred cceEEeccccccccccEEEeeeeeccEeccc------------ccceeceEeecccccceeeee
Confidence 577888888877532 11 1344443222 355566666655544444444
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.13 Score=52.46 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=29.3
Q ss_pred eEEEEeeecEEEEeeEEeeC-------CCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEe
Q 009075 255 LMEFMYTDNIQISSLTLLNS-------PSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIV 322 (544)
Q Consensus 255 ~i~~~~~~nv~I~~v~i~ns-------~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~ 322 (544)
.|.+.++.+++|++.++..- .+-++++..+.++.|.+.+|. .-.|||..+.|++..|++..++
T Consensus 122 Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndis-----y~rDgIy~~~S~~~~~~gnr~~ 191 (408)
T COG3420 122 GIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDIS-----YGRDGIYSDTSQHNVFKGNRFR 191 (408)
T ss_pred EEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccc-----cccceEEEcccccceecccchh
Confidence 34445555555555554331 123444444444444444443 2345555555555555544443
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.22 E-value=0.68 Score=44.92 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=71.0
Q ss_pred eEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEec-CCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCceEE
Q 009075 286 NILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVS-GDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIA 364 (544)
Q Consensus 286 nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~gIs 364 (544)
..+++|+.|-. +..||||..+ +.+|+|+++.. +.|++.++.. ...++|.+.-..+...--|.
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~-----------~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGD-----------GGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESS-----------EEEEEEESTEEEEEEEEEEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCC-----------CceEEEeCCcccCCCccEEE
Confidence 45666666633 4578998876 78889988876 8999999874 22555555444421101122
Q ss_pred EcccccCCeEEEEEEeeEEEcCCceEEEEeecC---CCCceeeEEEEeeEecccceeEEEEeecCCCCCCCCCCCCCCeE
Q 009075 365 LGSEMSGGIQDVRAEDIKAINTESGVRIKTAVG---RGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVI 441 (544)
Q Consensus 365 IGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g---~~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~~~~~~~~~I 441 (544)
.. +--.++|+|-+..+ .|-...+..+ .++.-|+|.+++........-+-|..+|++. ..|
T Consensus 125 ~N-----g~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~----------ati 187 (215)
T PF03211_consen 125 HN-----GGGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDT----------ATI 187 (215)
T ss_dssp E------SSEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTT----------EEE
T ss_pred ec-----CceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCe----------EEE
Confidence 21 11246666644432 3444444321 1234567777777665545556678888753 256
Q ss_pred EeEEEEE
Q 009075 442 QGINYRD 448 (544)
Q Consensus 442 ~nItf~N 448 (544)
+++++..
T Consensus 188 ~~~~~~~ 194 (215)
T PF03211_consen 188 SNSCIKG 194 (215)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 6666655
No 78
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=94.10 E-value=7.2 Score=39.98 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=69.1
Q ss_pred EEeeecEEEEeeEEeeCCCCCcc---------ccCCeeEEEEeeEEECCCCC--------CCCCCCCCCCcccEEEEccE
Q 009075 258 FMYTDNIQISSLTLLNSPSWNVH---------PVYSSNILVQGITIIAPVTS--------PNTDGINPDSCTNTRIEDCY 320 (544)
Q Consensus 258 ~~~~~nv~I~~v~i~ns~~~~i~---------~~~~~nv~I~~~~I~~~~~~--------~n~DGI~~~~s~nV~I~n~~ 320 (544)
+..-+++..++++++|....+.. ....+.+.+++|++....+- .|.-+-+. .-.-.++||+
T Consensus 185 ~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~--~~R~yftNsy 262 (405)
T COG4677 185 WVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR--QPRTYFTNSY 262 (405)
T ss_pred eeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc--chhhheecce
Confidence 34455677777777776554322 23566777777777764320 01111111 1245677888
Q ss_pred EecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC----ceE-EEcccccCCeEEEEEEeeEEEcCCc--eEEE-
Q 009075 321 IVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS----ATI-ALGSEMSGGIQDVRAEDIKAINTES--GVRI- 392 (544)
Q Consensus 321 i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~----~gI-sIGs~~~g~v~nI~v~n~~~~~~~~--Gi~I- 392 (544)
|+..=|-| .++ --..+.+|.+...+. .|. .--|.-++.-....+-||+|..... -+.+
T Consensus 263 I~GdvDfI-fGs-------------gtaVFd~c~i~~~d~r~~~~gYIfApST~~~~~YGflalNsrfna~g~~~s~~LG 328 (405)
T COG4677 263 IEGDVDFI-FGS-------------GTAVFDNCEIQVVDSRTQQEGYIFAPSTLSGIPYGFLALNSRFNASGDAGSAQLG 328 (405)
T ss_pred ecccceEE-ecc-------------ceEEeccceEEEeccCCCcceeEeccCCCCCCceeEEEEeeeeecCCCCCeeeec
Confidence 87543422 222 234566666553220 121 1122223444567777888765533 1112
Q ss_pred EeecCCCCceeeEEEEeeEecc
Q 009075 393 KTAVGRGGYVKDIYVRGMTMHT 414 (544)
Q Consensus 393 kt~~g~~g~v~nI~~~ni~~~~ 414 (544)
..|.-.....-.+.|+|..|..
T Consensus 329 Rpwd~~a~~nGQvVirds~m~e 350 (405)
T COG4677 329 RPWDVDANTNGQVVIRDSVMGE 350 (405)
T ss_pred CccccccccCceEEEEeccccc
Confidence 1232222234457777777654
No 79
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=91.67 E-value=2.4 Score=41.24 Aligned_cols=129 Identities=13% Similarity=0.086 Sum_probs=84.0
Q ss_pred eecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcc-cEEEEccEEecCCceeeccCCCCccCc
Q 009075 261 TDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCT-NTRIEDCYIVSGDDCVAVKSGWDEYGI 339 (544)
Q Consensus 261 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~-nV~I~n~~i~~gDD~Iai~sg~~~~G~ 339 (544)
-+..+|+|+.|-.+...+||... +.+|+|+.+..- -.|.+.+.+.. .++|.+.-.+..+|=|--..|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------ 127 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------ 127 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S------
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecC------
Confidence 35789999999777778999887 889999998863 36777777666 788999888887776543332
Q ss_pred cccCceeeEEEEEEEEeCCCCceEEE---ccccc--CCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEe
Q 009075 340 AYGMPTKQLVIRRLTCISPYSATIAL---GSEMS--GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRG 409 (544)
Q Consensus 340 ~~~~~s~nI~I~n~~~~~~~~~gIsI---Gs~~~--g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~n 409 (544)
.-.+.|+|.+... .|--+ |.-.. +.-+.|.+++........-+.|....++...|+++.+..
T Consensus 128 -----~Gtv~I~nF~a~d---~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -----GGTVTIKNFYAED---FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp -----SEEEEEEEEEEEE---EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred -----ceeEEEEeEEEcC---CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 3468888866652 34322 22222 245667777766544434456666667767777776665
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=90.81 E-value=3.6 Score=43.43 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=29.2
Q ss_pred EeeecEEEEeeEEeeCC-CCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEec
Q 009075 259 MYTDNIQISSLTLLNSP-SWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVS 323 (544)
Q Consensus 259 ~~~~nv~I~~v~i~ns~-~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~ 323 (544)
.+-.+|++.|+.|...+ .-++.+....+++|.+|.+.+.. |.-++.-....|++|.|..
T Consensus 118 ~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~------g~cl~~~~~~~VrGC~F~~ 177 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH------GTCLESWAGGEVRGCTFYG 177 (386)
T ss_pred eeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc------ceeEEEcCCcEEeeeEEEE
Confidence 33445666666665555 34444555555666666655421 2222223445555555543
No 81
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=87.15 E-value=3 Score=41.53 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=20.6
Q ss_pred CCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEec
Q 009075 283 YSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVS 323 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~ 323 (544)
...+.+|++++|.++.. ...-||.+.++ +.+|+||+|..
T Consensus 95 ~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~ 133 (246)
T PF07602_consen 95 LANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTN 133 (246)
T ss_pred ecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEEC
Confidence 34567888888888621 12234444433 44444444443
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=86.96 E-value=0.46 Score=33.73 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=13.2
Q ss_pred CCCCCCcccEEEEccEEecCCceeecc
Q 009075 305 GINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 305 GI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
||.++.+.+.+|+++.+....|+|.+.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~ 27 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLT 27 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEE
Confidence 344444455555555555544455443
No 83
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=86.11 E-value=1.9 Score=46.14 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=9.7
Q ss_pred eEEEEEEeeEEEcCCceEEE
Q 009075 373 IQDVRAEDIKAINTESGVRI 392 (544)
Q Consensus 373 v~nI~v~n~~~~~~~~Gi~I 392 (544)
++|++|.+++|.++..+|.+
T Consensus 309 v~nv~I~~NT~In~~~~i~~ 328 (425)
T PF14592_consen 309 VKNVLIANNTFINCKSPIHF 328 (425)
T ss_dssp -BSEEEES-EEES-SEEEES
T ss_pred cceeEEecceEEccCCceEE
Confidence 55666666666665544444
No 84
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=84.74 E-value=0.62 Score=33.07 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=23.8
Q ss_pred ccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEe
Q 009075 279 VHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIV 322 (544)
Q Consensus 279 i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~ 322 (544)
|.+..+.+.+|++.++.. +.|||++..+++-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 444555556666666654 455777766666666666654
No 85
>PLN02773 pectinesterase
Probab=83.06 E-value=12 Score=38.71 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=72.9
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
.++++..+|++|.|.... ..+-.+.+. +..+.+.||.|....|.+..+.+ .-.++||++.+.-
T Consensus 100 ~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~g-------------r~yf~~c~IeG~V- 164 (317)
T PLN02773 100 EGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHYG-------------KQYLRDCYIEGSV- 164 (317)
T ss_pred ECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCCC-------------CEEEEeeEEeecc-
Confidence 467889999999986421 223334443 67899999999998888776543 3588999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|++|++.....|. | |.+++. ..-....|.|+++...
T Consensus 165 -DFIFG~------g~a~Fe~c~i~s~~~g~-I-TA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 165 -DFIFGN------STALLEHCHIHCKSAGF-I-TAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred -cEEeec------cEEEEEeeEEEEccCcE-E-ECCCCCCCCCCceEEEEccEEecC
Confidence 344553 25789999997654442 3 333221 1224578999999874
No 86
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=81.18 E-value=14 Score=34.88 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=29.4
Q ss_pred eeeEEEEEEEEeCCCCceEEEc-cc----ccCCeEEEEEEeeEEEcCC
Q 009075 345 TKQLVIRRLTCISPYSATIALG-SE----MSGGIQDVRAEDIKAINTE 387 (544)
Q Consensus 345 s~nI~I~n~~~~~~~~~gIsIG-s~----~~g~v~nI~v~n~~~~~~~ 387 (544)
..|.+|+|+.|.+..+.||+-- .. ..+.-.-.+|||+.|.++.
T Consensus 63 F~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 63 FYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred ccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 6788999999998776666542 11 1233345889999998874
No 87
>PLN02665 pectinesterase family protein
Probab=77.20 E-value=24 Score=37.31 Aligned_cols=113 Identities=13% Similarity=0.118 Sum_probs=73.2
Q ss_pred cCCeeEEEEeeEEECCCCC-------CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEE
Q 009075 282 VYSSNILVQGITIIAPVTS-------PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLT 354 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~-------~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~ 354 (544)
..++++..+|++|.|.... ..+-.+.+ .+....+.||.|....|.+....| .-.++||+
T Consensus 151 v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~~g-------------r~yf~~Cy 216 (366)
T PLN02665 151 VESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDDKG-------------RHFFKDCY 216 (366)
T ss_pred EECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceeccccceeEeCCC-------------CEEEEeeE
Confidence 3578899999999986421 12223333 367899999999998887765443 34889999
Q ss_pred EeCCCCceEEEcccccCCeEEEEEEeeEEEcCCce-EEEEeecCCC--CceeeEEEEeeEecccc
Q 009075 355 CISPYSATIALGSEMSGGIQDVRAEDIKAINTESG-VRIKTAVGRG--GYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 355 ~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v~ 416 (544)
+.+.- -+-+|. -...+++|++.-...| ...-|.+++. ..-....|.|+++....
T Consensus 217 IeG~V--DFIFG~------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 217 IEGTV--DFIFGS------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred Eeecc--ceeccc------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 99643 344453 2567888988765444 2333444332 22346789999998754
No 88
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.16 E-value=41 Score=37.12 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=78.9
Q ss_pred EEEeeecEEEEeeEEeeCCCCC----c-cccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeecc
Q 009075 257 EFMYTDNIQISSLTLLNSPSWN----V-HPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVK 331 (544)
Q Consensus 257 ~~~~~~nv~I~~v~i~ns~~~~----i-~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~ 331 (544)
.....+++..+|++|.|..... + .....+...+.+|+|.... |-+.... .+-..++|+|...=|=| +
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI-F- 336 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI-F- 336 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE-e-
Confidence 3446788999999999986431 1 1235778888888888643 4344333 34577888887643422 1
Q ss_pred CCCCccCccccCceeeEEEEEEEEeCCCC-----ceEEE-cccccCCeEEEEEEeeEEEcCCceEE----EEeecCCC-C
Q 009075 332 SGWDEYGIAYGMPTKQLVIRRLTCISPYS-----ATIAL-GSEMSGGIQDVRAEDIKAINTESGVR----IKTAVGRG-G 400 (544)
Q Consensus 332 sg~~~~G~~~~~~s~nI~I~n~~~~~~~~-----~gIsI-Gs~~~g~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~-g 400 (544)
| .....++||++..... ..|.- |......-..+.|.||++.+...... .+++-|+. +
T Consensus 337 -G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~ 404 (497)
T PLN02698 337 -G-----------NAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWK 404 (497)
T ss_pred -c-----------ccceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCC
Confidence 1 2345778887763210 11222 22222334578888888877532111 23333443 3
Q ss_pred ceeeEEEEeeEeccc
Q 009075 401 YVKDIYVRGMTMHTM 415 (544)
Q Consensus 401 ~v~nI~~~ni~~~~v 415 (544)
.-..+.|.+..|.+.
T Consensus 405 ~ysr~vf~~s~l~~~ 419 (497)
T PLN02698 405 KYSRAIVMESYIDDA 419 (497)
T ss_pred CCceEEEEecccCCc
Confidence 345677777777663
No 89
>PLN02480 Probable pectinesterase
Probab=74.75 E-value=29 Score=36.37 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=68.4
Q ss_pred CCeeEEEEeeEEECCCCC-----CCCCCCCC-CCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEe
Q 009075 283 YSSNILVQGITIIAPVTS-----PNTDGINP-DSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCI 356 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~-----~n~DGI~~-~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~ 356 (544)
..++++++|++|.+.... ...-++-+ ..+.++.+.||.|....|.+-...| .-.++||++.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~g-------------R~yf~~C~Ie 196 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKG-------------RHYYHSCYIQ 196 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCC-------------CEEEEeCEEE
Confidence 357889999999986311 01122333 2477899999999998887754433 3488899998
Q ss_pred CCCCceEEEcccccCCeEEEEEEeeEEEcCCc------eEEEEeecCCC-CceeeEEEEeeEeccc
Q 009075 357 SPYSATIALGSEMSGGIQDVRAEDIKAINTES------GVRIKTAVGRG-GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 357 ~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~------Gi~Ikt~~g~~-g~v~nI~~~ni~~~~v 415 (544)
+.- -+-+|. -...|+||++..... |. | |.+++. ..-....|.|+++...
T Consensus 197 G~V--DFIFG~------g~a~fe~C~i~s~~~~~~~~~G~-I-TA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 197 GSI--DFIFGR------GRSIFHNCEIFVIADRRVKIYGS-I-TAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred eee--eEEccc------eeEEEEccEEEEecCCCCCCceE-E-EcCCCCCCCCCEEEEECCEEccc
Confidence 532 233443 267889999875421 22 2 333321 2334678889988763
No 90
>PLN02682 pectinesterase family protein
Probab=74.61 E-value=27 Score=36.88 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=70.2
Q ss_pred CCeeEEEEeeEEECCCCC-------CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEE
Q 009075 283 YSSNILVQGITIIAPVTS-------PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTC 355 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~-------~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~ 355 (544)
..+++..+|++|.|.... ..+..+.+ .+.++.+.||.|....|.+....| .-.++||++
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v-~gDr~~fy~C~f~G~QDTLy~~~g-------------Rqyf~~C~I 226 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRI-SADTAAFYGCKFLGAQDTLYDHLG-------------RHYFKDCYI 226 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEe-cCCcEEEEcceEeccccceEECCC-------------CEEEEeeEE
Confidence 456888999999986421 11222333 367899999999998887765543 358999999
Q ss_pred eCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 356 ISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 356 ~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
.+.- -+-+|. -...|++|++.........-|.+++. ..-....|.|+++...
T Consensus 227 eG~V--DFIFG~------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 227 EGSV--DFIFGN------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred cccc--cEEecC------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 9643 344553 26788999997532211122333321 2235688899998874
No 91
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=72.13 E-value=32 Score=36.62 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=33.8
Q ss_pred eeeEEEEEEEEeCCCCceEEEccccc--------C-----------CeEEEEEEeeEEEcCCceEEEEeecCCCCceeeE
Q 009075 345 TKQLVIRRLTCISPYSATIALGSEMS--------G-----------GIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDI 405 (544)
Q Consensus 345 s~nI~I~n~~~~~~~~~gIsIGs~~~--------g-----------~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI 405 (544)
..|..++|.....+--+|+-+|+... + -..|=.|+|+...++ .|+.+. +.|.+++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 56777888777666557888777411 0 033445566655555 455543 34567777777
Q ss_pred EEEeeEe
Q 009075 406 YVRGMTM 412 (544)
Q Consensus 406 ~~~ni~~ 412 (544)
+.+++.-
T Consensus 341 ~~~d~~g 347 (549)
T PF09251_consen 341 TVQDCAG 347 (549)
T ss_dssp EEES-SS
T ss_pred EeecccC
Confidence 7776643
No 92
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=71.55 E-value=87 Score=33.68 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHHHhhccCCCCCcEEEEcCCeEEeeeEEEeeeeEEeee
Q 009075 136 FKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLH 177 (544)
Q Consensus 136 iq~AI~~~~~~~~~gg~~v~iP~G~Yl~g~i~l~S~~tl~l~ 177 (544)
+.+|+..+.+. .-...+++-+|+|....|.+.|.+.+..+
T Consensus 35 iEea~~~l~e~--~~e~LIFlH~G~~e~~~i~I~sdvqiiGA 74 (625)
T KOG1777|consen 35 IEEALRFLDEN--DEEKLIFLHEGTHETETIRITSDVQIIGA 74 (625)
T ss_pred HHHHhhhcccc--cccceEEEEeccccceEEEEcCCeeEecc
Confidence 44444444331 33567788899999888998888887443
No 93
>PLN02634 probable pectinesterase
Probab=70.32 E-value=34 Score=36.04 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=69.5
Q ss_pred CeeEEEEeeEEECCCCC-------CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEe
Q 009075 284 SSNILVQGITIIAPVTS-------PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCI 356 (544)
Q Consensus 284 ~~nv~I~~~~I~~~~~~-------~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~ 356 (544)
.+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+....| .-.++||++.
T Consensus 148 a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v-~gDra~f~~C~f~G~QDTL~~~~g-------------R~yf~~CyIe 213 (359)
T PLN02634 148 ANYFTARNISFKNTAPAPMPGMQGWQAVAFRI-SGDKAFFFGCGFYGAQDTLCDDAG-------------RHYFKECYIE 213 (359)
T ss_pred CCCeEEEeCeEEeCCccCCCCCCCCceEEEEe-cCCcEEEEEeEEecccceeeeCCC-------------CEEEEeeEEc
Confidence 46777888888875421 12222333 267799999999998887765443 4588999999
Q ss_pred CCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 357 SPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 357 ~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
+.- -+-+|. -...|+||++.........-+.+++. ..-....|.|+++...
T Consensus 214 G~V--DFIFG~------g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 214 GSI--DFIFGN------GRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred ccc--cEEcCC------ceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCC
Confidence 543 344453 15578899987543222233444432 2335689999999764
No 94
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=69.79 E-value=27 Score=33.08 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=8.5
Q ss_pred eEEEEEEEEeCCCCceEE
Q 009075 347 QLVIRRLTCISPYSATIA 364 (544)
Q Consensus 347 nI~I~n~~~~~~~~~gIs 364 (544)
||+|-|+++....+.||.
T Consensus 3 dIEIYnN~I~~T~g~GIW 20 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIW 20 (198)
T ss_pred ceEEecceeecccCceEE
Confidence 444455555444444443
No 95
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=69.24 E-value=64 Score=35.84 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=72.9
Q ss_pred cCCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC
Q 009075 282 VYSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY 359 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~ 359 (544)
...+++..+|++|.|.... ..+-.+.+. +....+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~-gDr~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~GtV 375 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVG-SDKSVVYRCSVEGYQDSLYTHSK-------------RQFYRETDITGTV 375 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEec-CCcEEEEeeeEeccCCcceeCCC-------------CEEEEeeEEcccc
Confidence 4467888999999986432 233334443 67899999999998887766543 3478999999643
Q ss_pred CceEEEcccccCCeEEEEEEeeEEEcCCc--eEEEEeecCCC--CceeeEEEEeeEecccc
Q 009075 360 SATIALGSEMSGGIQDVRAEDIKAINTES--GVRIKTAVGRG--GYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 360 ~~gIsIGs~~~g~v~nI~v~n~~~~~~~~--Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v~ 416 (544)
-+-+|. -...|+||.+.-... .-..-|.+++. ..-..+.|.|+++....
T Consensus 376 --DFIFG~------a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 376 --DFIFGN------SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred --ceeccc------ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 344443 267888998865321 11223444432 33456899999998743
No 96
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=69.13 E-value=47 Score=37.22 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|..+. ..+-.+.+ .+..+.+.||.|....|.+-..++ .-.+++|++.+.-
T Consensus 328 ~~~~f~a~~it~~Ntag~~~~QAVAlrv-~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~GtV- 392 (553)
T PLN02708 328 LGDGFMARDLTIQNTAGPDAHQAVAFRS-DSDLSVIENCEFLGNQDTLYAHSL-------------RQFYKSCRIQGNV- 392 (553)
T ss_pred EcCCeEEEeeEEEcCCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceeCCC-------------ceEEEeeEEeecC-
Confidence 456889999999986532 23333433 367899999999998888776553 3478999999653
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcC------Cce--EEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINT------ESG--VRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~------~~G--i~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-. ..| -.| |.+++. ..-..+.|.|+++...
T Consensus 393 -DFIFG~------a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 393 -DFIFGN------SAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred -CEEecC------ceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecC
Confidence 355553 2678999999732 111 223 444432 3345789999999764
No 97
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=68.55 E-value=21 Score=38.03 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=25.6
Q ss_pred eeeEEEEEEEEeCCCCceEEEccccc-CCeEEEEEEeeEEEcCCceEEEEee
Q 009075 345 TKQLVIRRLTCISPYSATIALGSEMS-GGIQDVRAEDIKAINTESGVRIKTA 395 (544)
Q Consensus 345 s~nI~I~n~~~~~~~~~gIsIGs~~~-g~v~nI~v~n~~~~~~~~Gi~Ikt~ 395 (544)
..|-.|+|....++. |+-+|.... +.++||++++|. ..|+.+++.
T Consensus 310 PtnHiidNi~~~~~l--GVG~~~DG~~~yvsni~~~d~~----g~G~~~~~~ 355 (549)
T PF09251_consen 310 PTNHIIDNILVRGSL--GVGIGMDGKGGYVSNITVQDCA----GAGIFIRGT 355 (549)
T ss_dssp ----EEEEEEEES-S--SESCEEECCS-EEEEEEEES-S----SESEEEECC
T ss_pred chhhhhhhhheeccc--eeeeeecCCCceEeeEEeeccc----CCceEEeec
Confidence 456778998888654 666655433 357777777762 357777664
No 98
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=66.96 E-value=46 Score=36.76 Aligned_cols=113 Identities=10% Similarity=0.125 Sum_probs=72.1
Q ss_pred cCCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC
Q 009075 282 VYSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY 359 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~ 359 (544)
...+++..+|++|.|.... ..+-.+.+ .+..+.+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v-~~D~~~fy~c~~~G~QDTLy~~~~-------------rqyy~~C~I~G~v 332 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSI-TSDHSVLYRCSIAGYQDTLYAAAL-------------RQFYRECDIYGTI 332 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEcceeecccchheeCCC-------------cEEEEeeEEEecc
Confidence 3567889999999986532 22333444 367899999999998887766553 2388899999543
Q ss_pred CceEEEcccccCCeEEEEEEeeEEEcCCc--e-EEEEeecCC--CCceeeEEEEeeEecccc
Q 009075 360 SATIALGSEMSGGIQDVRAEDIKAINTES--G-VRIKTAVGR--GGYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 360 ~~gIsIGs~~~g~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~--~g~v~nI~~~ni~~~~v~ 416 (544)
-+-+|. -...|+||++.-... | -..-|.+++ ...-..+.|.|+++....
T Consensus 333 --DFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 333 --DFIFGN------AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred --ceEecc------cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 344553 256888888864311 1 112244432 233457899999988643
No 99
>PLN02671 pectinesterase
Probab=66.40 E-value=43 Score=35.33 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=66.9
Q ss_pred CeeEEEEeeEEECCCC------CCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeC
Q 009075 284 SSNILVQGITIIAPVT------SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCIS 357 (544)
Q Consensus 284 ~~nv~I~~~~I~~~~~------~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~ 357 (544)
.+++..+|++|.|... ...+-.+.+. +.++.+.||.|....|.+-...| .-.++||++.+
T Consensus 153 a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~QDTLy~~~g-------------R~yf~~CyIeG 218 (359)
T PLN02671 153 SDYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQDTLLDETG-------------SHYFYQCYIQG 218 (359)
T ss_pred CCceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEeccccccEeCCC-------------cEEEEecEEEE
Confidence 4667778888887531 1123333333 67899999999998887755443 34889999995
Q ss_pred CCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCC--CCceeeEEEEeeEeccc
Q 009075 358 PYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGR--GGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 358 ~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~--~g~v~nI~~~ni~~~~v 415 (544)
.- -+-+|. -...|+||.+......-..-|.+++ ...-....|.|+++...
T Consensus 219 ~V--DFIFG~------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 219 SV--DFIFGN------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred ec--cEEecc------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccC
Confidence 43 344453 2578888888653221112233332 12235678999998763
No 100
>PLN02916 pectinesterase family protein
Probab=65.76 E-value=61 Score=35.76 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=71.2
Q ss_pred CCeeEEEEeeEEECCCCCC--CCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTSP--NTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|..... .+-.+.+ .+....+.+|.|....|.+-..++ .-.+++|++.+.-
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv-~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 339 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRV-SSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGTI- 339 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEE-cCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEeccc-
Confidence 4567888999998865322 2233333 367889999999998888776653 2478999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC----ceEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE----SGVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-.. .+-.| |.+++. ..-..+.|.|+++...
T Consensus 340 -DFIFG~------a~avFq~C~I~~~~~~~~~~g~I-TAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 340 -DFIFGD------AAVVFQNCDIFVRRPMDHQGNMI-TAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred -ceeccC------ceEEEecCEEEEecCCCCCcceE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 344453 26788899886431 11223 444432 3345789999998874
No 101
>PLN02432 putative pectinesterase
Probab=64.37 E-value=62 Score=33.17 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCeeEEEEeeEEECCCCC-CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCCc
Q 009075 283 YSSNILVQGITIIAPVTS-PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSA 361 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~-~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~~ 361 (544)
..+++.++|++|.|.... ..+-.+.+ .+..+.+.+|.|....|.+-...| .-.++||++.+.-
T Consensus 92 ~a~~f~a~nlt~~Nt~g~~~QAvAl~v-~gDr~~f~~c~~~G~QDTLy~~~g-------------r~yf~~c~I~G~V-- 155 (293)
T PLN02432 92 LASDFVGRFLTIQNTFGSSGKAVALRV-AGDRAAFYGCRILSYQDTLLDDTG-------------RHYYRNCYIEGAT-- 155 (293)
T ss_pred ECCCeEEEeeEEEeCCCCCCceEEEEE-cCCcEEEEcceEecccceeEECCC-------------CEEEEeCEEEecc--
Confidence 457888999999986421 12223333 367899999999988887765443 3488999999543
Q ss_pred eEEEcccccCCeEEEEEEeeEEEcCC--ceEEEEeecCC--CCceeeEEEEeeEecc
Q 009075 362 TIALGSEMSGGIQDVRAEDIKAINTE--SGVRIKTAVGR--GGYVKDIYVRGMTMHT 414 (544)
Q Consensus 362 gIsIGs~~~g~v~nI~v~n~~~~~~~--~Gi~Ikt~~g~--~g~v~nI~~~ni~~~~ 414 (544)
-+-+|. -...|++|.+.-.. .| .| +.+++ ...-....|.|+++..
T Consensus 156 DFIFG~------g~a~Fe~c~i~s~~~~~g-~i-tA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 156 DFICGN------AASLFEKCHLHSLSPNNG-AI-TAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred cEEecC------ceEEEEeeEEEEecCCCC-eE-EecCCCCCCCCceEEEEeeEEcc
Confidence 344553 25788888886421 23 33 33332 1223467899998875
No 102
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=64.26 E-value=87 Score=35.02 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|..+. ..+-.+.+ .+..+.+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 379 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRV-NADLVALYRCTINGYQDTLYVHSF-------------RQFYRECDIYGTI- 379 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEE-cCccEEEEcceEecccchhccCCC-------------ceEEEeeEEeecc-
Confidence 357888999999986532 23333333 367899999999998887765543 3489999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC--ce-EEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE--SG-VRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-.. .| ...-|.+++. ..-..+.|.|+++...
T Consensus 380 -DFIFG~------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 380 -DYIFGN------AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred -ceeecc------ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 344553 26788888886431 11 1223444432 2335789999998764
No 103
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=63.67 E-value=85 Score=35.52 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=72.2
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-.++||++.+.-
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~Dr~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 434 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRV-QSDRSIFLNCRFEGYQDTLYAQTH-------------RQFYRSCVITGTI- 434 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeEEeecccccccCCC-------------cEEEEeeEEEeec-
Confidence 457888999999986421 23333443 367899999999998887765543 3589999999653
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCCc--e-EEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTES--G-VRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-... + -..-|.+++. ..-..+.|.|+++...
T Consensus 435 -DFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 435 -DFIFGD------AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred -cEEecc------eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecC
Confidence 244553 367889999864310 0 1122444432 3346789999999864
No 104
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=63.50 E-value=56 Score=37.35 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv-~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 399 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRV-LSDESIFYNCKFDGYQDTLYAHSH-------------RQFYRDCTISGTI- 399 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeeeccchhccCCC-------------cEEEEeCEEEEec-
Confidence 456788999999986532 22223333 367899999999998887766543 3488999999543
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC----ceEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE----SGVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-.. ..-.| |.+++. ..-..+.|.|+++...
T Consensus 400 -DFIFG~------a~avfq~C~I~~r~~~~~~~~~I-TAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 400 -DFLFGD------AAAVFQNCTLLVRKPLLNQACPI-TAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred -cEEecC------ceEEEEccEEEEccCCCCCceeE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 344443 25788999997431 11223 444432 3345789999999874
No 105
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=62.83 E-value=63 Score=36.31 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCeeEEEEeeEEECCCCCC--CCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTSP--NTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|..... .+-.+.+ .+....+.+|.|....|.+-..++ .-.++||++.+.-
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 402 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRS-GADLSTFYSCSFEAYQDTLYTHSL-------------RQFYRECDIYGTV- 402 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeeccCCcceEECCC-------------CEEEEeeEEeccc-
Confidence 4578999999999865322 2223333 367789999999998888776553 3489999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC--ce-EEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE--SG-VRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -.+.|+||.+.-.. .+ -..-|.+++. ..-..+.|.|+++...
T Consensus 403 -DFIFG~------a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 403 -DFIFGN------AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred -ceeccc------ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 344443 26788999986431 11 1122444322 3345689999998764
No 106
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=62.06 E-value=64 Score=36.00 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=72.5
Q ss_pred cCCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC
Q 009075 282 VYSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY 359 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~ 359 (544)
...+++..+|++|.|.... ..+-.+.+ .+.++.+.+|.|....|.+-..++ .-..+||++.+.-
T Consensus 316 v~~~~F~a~nit~~Ntag~~~~QAVAl~v-~~D~~~fy~C~~~G~QDTLy~~~~-------------rqyy~~C~I~GtV 381 (537)
T PLN02506 316 VSGRGFIARDITFRNTAGPQNHQAVALRV-DSDQSAFYRCSMEGYQDTLYAHSL-------------RQFYRECEIYGTI 381 (537)
T ss_pred EEcCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeecccccceecCC-------------ceEEEeeEEeccc
Confidence 4567889999999986532 23333433 368899999999998887766543 3488999999643
Q ss_pred CceEEEcccccCCeEEEEEEeeEEEcCCc---eEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 360 SATIALGSEMSGGIQDVRAEDIKAINTES---GVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 360 ~~gIsIGs~~~g~v~nI~v~n~~~~~~~~---Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-... .-..-|.+++. ..-..+.|.|+++...
T Consensus 382 --DFIFG~------a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 382 --DFIFGN------GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred --ceEccC------ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 344553 257888999874311 11222444431 2335688999988763
No 107
>PLN02176 putative pectinesterase
Probab=61.15 E-value=1.2e+02 Score=31.89 Aligned_cols=111 Identities=18% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCeeEEEEeeEEECCCCC--------CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEE
Q 009075 283 YSSNILVQGITIIAPVTS--------PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLT 354 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--------~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~ 354 (544)
..+++..+|++|.|.... ..+..+.+ .+..+.+.+|.|....|.+-...| .-.++||+
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v-~gDr~~f~~C~f~G~QDTLy~~~g-------------Rqyf~~Cy 185 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARM-LGDKYAIIDSSFDGFQDTLFDGKG-------------RHYYKRCV 185 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEe-cCccEEEEccEEecccceeEeCCc-------------CEEEEecE
Confidence 367889999999986421 11222333 267899999999998887765443 45889999
Q ss_pred EeCCCCceEEEcccccCCeEEEEEEeeEEEcCC------ceEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 355 CISPYSATIALGSEMSGGIQDVRAEDIKAINTE------SGVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 355 ~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~------~Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
+.+.- -+-+|. -...|+||++.-.. ..-..-|.+++. ..-....|.|+++...
T Consensus 186 IeG~V--DFIFG~------a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 186 ISGGI--DFIFGY------AQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred EEecc--cEEecC------ceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccC
Confidence 99643 344453 26788999987421 111222444332 2334688999999864
No 108
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=60.60 E-value=84 Score=35.53 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=72.5
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-..++|++.+.-
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~fy~C~~~g~QDTLy~~~~-------------rq~y~~c~I~Gtv- 424 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRV-GSDFSAFYQCDMFAYQDTLYVHSN-------------RQFFVKCHITGTV- 424 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeecc-
Confidence 346788888999886532 23333433 367889999999998887766653 2388999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC--ce-EEEEeecCCC--CceeeEEEEeeEecccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE--SG-VRIKTAVGRG--GYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v~ 416 (544)
-+-+|. -...|+||.+.-.. .| ...-|.+++. ..-..+.|.|+++....
T Consensus 425 -DFIFG~------a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 425 -DFIFGN------AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred -ceeccc------eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 344443 36789999997431 11 1233555432 33457899999997643
No 109
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=60.32 E-value=86 Score=35.41 Aligned_cols=112 Identities=12% Similarity=0.143 Sum_probs=71.8
Q ss_pred cCCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC
Q 009075 282 VYSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY 359 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~ 359 (544)
...+++..+|++|.|.... ..+-.+.+ .+....+.||.|....|.+...++ .-.++||++.+.-
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 422 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRV-GADHAVVYRCNIIGYQDTLYVHSN-------------RQFFRECDIYGTV 422 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeeEeccCcccccCCC-------------cEEEEecEEEecc
Confidence 3456788888888886432 22333333 367899999999998887766553 3488999999543
Q ss_pred CceEEEcccccCCeEEEEEEeeEEEcCC--c-eEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 360 SATIALGSEMSGGIQDVRAEDIKAINTE--S-GVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 360 ~~gIsIGs~~~g~v~nI~v~n~~~~~~~--~-Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-.. . .-..-|.+++. ..-..+.|.|+++...
T Consensus 423 --DFIFG~------a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 423 --DFIFGN------AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred --ceeccc------ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 344443 26788999986421 1 11223444432 3346789999999764
No 110
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=58.88 E-value=76 Score=32.58 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=60.0
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..++++++|++|.+.... ..+-.+.+ .+.++.+.+|.|...-|.+-... ....++||++.+.-
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG~v- 149 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEGNV- 149 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEESE-
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEecC-
Confidence 467888999999885421 23334444 35778999999998888776654 24588999999542
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC----ceEEEEeecCC--CCceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE----SGVRIKTAVGR--GGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~--~g~v~nI~~~ni~~~~v 415 (544)
=+-.|.. ...|+||++.-.. .+..| +.+++ ...-....|.|+++...
T Consensus 150 -DFIfG~~------~a~f~~c~i~~~~~~~~~~~~I-tA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 150 -DFIFGNG------TAVFENCTIHSRRPGGGQGGYI-TAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp -EEEEESS------EEEEES-EEEE--SSTSSTEEE-EEE---CTTSS-EEEEES-EEEES
T ss_pred -cEEECCe------eEEeeeeEEEEeccccccceeE-EeCCccccCCCeEEEEEEeEEecC
Confidence 3445531 5578888887432 12233 33322 23345678899888753
No 111
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=57.88 E-value=92 Score=35.07 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=71.6
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 409 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRV-SADYAVFYNCQIDGYQDTLYVHSH-------------RQFFRDCTVSGTV- 409 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEE-cCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeccc-
Confidence 456788899999986532 22222333 367899999999998887766543 3478999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC--ce-EEEEeecCCC--CceeeEEEEeeEecccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE--SG-VRIKTAVGRG--GYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v~ 416 (544)
-+-+|. -...|+||.+.-.. .| -..-|.+++. ..-..+.|.|+++....
T Consensus 410 -DFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 410 -DFIFGD------AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred -ceEccC------ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 344453 25788999986421 11 1233444432 23356899999998753
No 112
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=57.73 E-value=90 Score=34.92 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=71.0
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-..+||++.+.-
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 385 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRV-SADQAVINRCRIDAYQDTLYAHSL-------------RQFYRDSYITGTV- 385 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceecCC-------------cEEEEeeEEEecc-
Confidence 456788888999886432 22333333 367899999999998887766553 3489999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCCc--e-EEEEeecCC--CCceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTES--G-VRIKTAVGR--GGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~--~g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-... | -..-|.+++ ...-..+.|.|+++...
T Consensus 386 -DFIFG~------a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 386 -DFIFGN------AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred -ceeccc------ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 344443 267888998864321 1 112244443 23345789999998864
No 113
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=57.55 E-value=1.1e+02 Score=34.06 Aligned_cols=111 Identities=11% Similarity=0.120 Sum_probs=71.0
Q ss_pred cCCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC
Q 009075 282 VYSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY 359 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~ 359 (544)
...+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-..++|++.+.-
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 355 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRS-DSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGTV 355 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeecc
Confidence 3456788889999886532 22333333 367899999999998888776553 2377999999643
Q ss_pred CceEEEcccccCCeEEEEEEeeEEEcCC----ceEEEEeecCC--CCceeeEEEEeeEeccc
Q 009075 360 SATIALGSEMSGGIQDVRAEDIKAINTE----SGVRIKTAVGR--GGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 360 ~~gIsIGs~~~g~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~--~g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-.. ..-.| |.+++ ...-..+.|.|+++...
T Consensus 356 --DFIFG~------a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 356 --DFIFGD------ATAVFQNCQILAKKGLPNQKNTI-TAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred --cEEecC------ceEEEEccEEEEecCCCCCCceE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 344553 25788999886421 11122 44443 23345688999998763
No 114
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=56.93 E-value=1.2e+02 Score=33.85 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=70.4
Q ss_pred cCCeeEEEEeeEEECCCCCC--CCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC
Q 009075 282 VYSSNILVQGITIIAPVTSP--NTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY 359 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~ 359 (544)
...+++..+|++|.|..... .+-.+.+ .+..+.+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 302 v~a~~F~a~nitf~Ntag~~~~QAVAlrv-~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~IeGtV 367 (530)
T PLN02933 302 VKGKGFIAKDISFVNYAGPAKHQAVALRS-GSDHSAFYRCEFDGYQDTLYVHSA-------------KQFYRECDIYGTI 367 (530)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEEeEEEecccccccCCC-------------ceEEEeeEEeccc
Confidence 34567888999999865321 2222332 367899999999998887766553 2389999999643
Q ss_pred CceEEEcccccCCeEEEEEEeeEEEcCC----ceEEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 360 SATIALGSEMSGGIQDVRAEDIKAINTE----SGVRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 360 ~~gIsIGs~~~g~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-.. ..-.| |.+++. ..-..+.|.|+++...
T Consensus 368 --DFIFG~------a~avFq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 368 --DFIFGN------AAVVFQNCSLYARKPNPNHKIAF-TAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred --ceeccC------ceEEEeccEEEEeccCCCCceEE-EecCCCCCCCCceEEEEeeEEecC
Confidence 344553 25678888886431 11223 444432 2335688999998764
No 115
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=56.70 E-value=1.2e+02 Score=33.92 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=70.7
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-..+||++.+.-
T Consensus 311 ~~~~F~a~~it~~Ntag~~~~QAvAlrv-~~D~~~f~~C~~~gyQDTLy~~~~-------------rq~y~~c~I~GtV- 375 (538)
T PLN03043 311 SGERFVAVDVTFRNTAGPEKHQAVALRN-NADLSTFYRCSFEGYQDTLYVHSL-------------RQFYRECDIYGTV- 375 (538)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeEEeccCcccccCCC-------------cEEEEeeEEeecc-
Confidence 457889999999986532 12222333 367799999999998887766553 3488999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC--ce-EEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE--SG-VRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-.. .+ -..-|.+++. ..-..+.|.|+++...
T Consensus 376 -DFIFG~------a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 376 -DFIFGN------AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred -ceEeec------ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 344553 26788999986431 11 1122334322 2235688999998864
No 116
>PLN02497 probable pectinesterase
Probab=54.82 E-value=93 Score=32.49 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCeeEEEEeeEEECCCCCC---------CCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEE
Q 009075 283 YSSNILVQGITIIAPVTSP---------NTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRL 353 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~~---------n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~ 353 (544)
..+++..+|++|.|....+ .+-.+.+ .+....+.||.|....|.+-...| .-.++||
T Consensus 113 ~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v-~gDr~~fy~C~f~G~QDTLy~~~g-------------Rqyf~~C 178 (331)
T PLN02497 113 LADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMI-GGDKSAFYSCGFAGVQDTLWDSDG-------------RHYFKRC 178 (331)
T ss_pred ecCCeEEEccEEEeCCCCccccCCCCCcceEEEEe-cCCcEEEEeeEEeccccceeeCCC-------------cEEEEeC
Confidence 4678999999999865311 1112222 367889999999998887754433 3588999
Q ss_pred EEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCc----e-EEEEeecCC--CCceeeEEEEeeEeccc
Q 009075 354 TCISPYSATIALGSEMSGGIQDVRAEDIKAINTES----G-VRIKTAVGR--GGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 354 ~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~----G-i~Ikt~~g~--~g~v~nI~~~ni~~~~v 415 (544)
++.+.- -+-+|. -...|+||.+..... + -..-|.+++ ...-....|.|+++...
T Consensus 179 ~IeG~V--DFIFG~------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 179 TIQGAV--DFIFGS------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred EEEecc--cEEccC------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 999543 344443 257888888864311 1 122233332 13334678899998863
No 117
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=54.71 E-value=1.3e+02 Score=33.17 Aligned_cols=112 Identities=10% Similarity=0.066 Sum_probs=71.6
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv-~~Dra~Fy~C~f~GyQDTLy~~~~-------------RqyyrdC~I~GtV- 346 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRV-SGDMSVIYRCRIEGYQDALYPHRD-------------RQFYRECFITGTV- 346 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEcceeeccCcceeeCCC-------------CEEEEeeEEeecc-
Confidence 356778888888886532 12223333 367899999999998887765543 3588999999653
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCCc--e-EEEEeecCCC--CceeeEEEEeeEecccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTES--G-VRIKTAVGRG--GYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v~ 416 (544)
-+-+|. -...|+||.+.-... | -..-|.+++. ..-..+.|.|+++....
T Consensus 347 -DFIFG~------a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 347 -DFICGN------AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred -ceEecc------eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 344553 367899999964311 1 1123555432 23356899999988753
No 118
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=53.98 E-value=1e+02 Score=34.68 Aligned_cols=111 Identities=12% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... +.+-.+.+ .+....+.+|.|....|.+-..++ .-..+||++.+.-
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gtv- 407 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMS-SADLSVFYRCTMDAFQDTLYAHAQ-------------RQFYRECNIYGTV- 407 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEE-cCCcEEEEEeEEEeccchhccCCC-------------ceEEEeeEEeccc-
Confidence 457889999999986532 22333333 367899999999998887766543 3478999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCCc--e-EEEEeecCC--CCceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTES--G-VRIKTAVGR--GGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~--~g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||.+.-... | -..-|.+++ ...-..+.|.|+++...
T Consensus 408 -DFIFG~------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 408 -DFIFGN------SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred -ceeecc------ceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecC
Confidence 344553 267889998863211 0 112344443 23345689999998864
No 119
>PLN02197 pectinesterase
Probab=53.59 E-value=1.3e+02 Score=34.01 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=72.9
Q ss_pred cCCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCC
Q 009075 282 VYSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPY 359 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~ 359 (544)
...+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-.+++|++.+.-
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~GtV 426 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRV-NGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGTV 426 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEe-cCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEecc
Confidence 3467788899999986432 23334444 367899999999998888776653 3388999999543
Q ss_pred CceEEEcccccCCeEEEEEEeeEEEcCC--ce-EEEEeecCCC---CceeeEEEEeeEecccc
Q 009075 360 SATIALGSEMSGGIQDVRAEDIKAINTE--SG-VRIKTAVGRG---GYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 360 ~~gIsIGs~~~g~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~---g~v~nI~~~ni~~~~v~ 416 (544)
-+-+|. -...|+||.+.-.. .| -..-|.+++. ..-..+.|.|+++....
T Consensus 427 --DFIFG~------a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 427 --DFIFGK------SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred --cccccc------eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 234442 24788899886321 12 1222555542 33457899999998743
No 120
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=52.36 E-value=1.1e+02 Score=34.33 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=70.2
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-.++||++.+.-
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~Dr~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 374 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRS-SSDLSIFYKCSIEGYQDTLMVHSQ-------------RQFYRECYIYGTV- 374 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEE-cCCceeEEcceEecccchhccCCC-------------ceEEEeeEEeecc-
Confidence 356778888888886432 12333333 367899999999998887765543 3488999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC--ce-EEEEeecCCC--CceeeEEEEeeEeccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE--SG-VRIKTAVGRG--GYVKDIYVRGMTMHTM 415 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~~~ni~~~~v 415 (544)
-+-+|. -...|+||++.-.. .| -..-|.+++. ..-..+.|.|+++...
T Consensus 375 -DFIFG~------a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 375 -DFIFGN------AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred -ceEecc------cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecC
Confidence 344553 25678888886431 11 1223444432 3346789999999874
No 121
>PLN02314 pectinesterase
Probab=52.34 E-value=97 Score=35.03 Aligned_cols=112 Identities=11% Similarity=0.134 Sum_probs=71.6
Q ss_pred CCeeEEEEeeEEECCCCC--CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC
Q 009075 283 YSSNILVQGITIIAPVTS--PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS 360 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~ 360 (544)
..+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|.+...++ .-..+||++.+.-
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gtv- 427 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRS-GSDMSVFYQCSFDAFQDTLYAHSN-------------RQFYRDCDITGTI- 427 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeEEEeccchheeCCC-------------CEEEEeeEEEecc-
Confidence 457788899999886422 12223333 367789999999998887766553 2488999999643
Q ss_pred ceEEEcccccCCeEEEEEEeeEEEcCC--c-eEEEEeecCC--CCceeeEEEEeeEecccc
Q 009075 361 ATIALGSEMSGGIQDVRAEDIKAINTE--S-GVRIKTAVGR--GGYVKDIYVRGMTMHTMK 416 (544)
Q Consensus 361 ~gIsIGs~~~g~v~nI~v~n~~~~~~~--~-Gi~Ikt~~g~--~g~v~nI~~~ni~~~~v~ 416 (544)
-+-+|. -...|+||.+.-.. . .-..-|.+++ ...-..+.|.|+++....
T Consensus 428 -DFIFG~------a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 428 -DFIFGN------AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -ceeccC------ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 344443 26788899886421 1 1123355543 234457899999998753
No 122
>PLN02304 probable pectinesterase
Probab=49.92 E-value=1.6e+02 Score=31.42 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCeeEEEEeeEEECCCCC-------CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEE
Q 009075 283 YSSNILVQGITIIAPVTS-------PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTC 355 (544)
Q Consensus 283 ~~~nv~I~~~~I~~~~~~-------~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~ 355 (544)
..+++..+|++|.|.... ..+-.+.+ .+..+.+.+|.|....|.+-...| .-.++||++
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v-~gDra~fy~C~f~G~QDTLy~~~g-------------R~Yf~~CyI 225 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRI-AGDQAAFWGCGFFGAQDTLHDDRG-------------RHYFKDCYI 225 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEe-cCCcEEEEeceEecccceeEeCCC-------------CEEEEeeEE
Confidence 346788888888885421 11222333 367899999999998887765443 357999999
Q ss_pred eCCCCceEEEcccccCCeEEEEEEeeEEEcCCce---------EEEEeecCC--CCceeeEEEEeeEecc
Q 009075 356 ISPYSATIALGSEMSGGIQDVRAEDIKAINTESG---------VRIKTAVGR--GGYVKDIYVRGMTMHT 414 (544)
Q Consensus 356 ~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~G---------i~Ikt~~g~--~g~v~nI~~~ni~~~~ 414 (544)
.+.- -+-+|. -...|++|.+...... -.| |.+++ ...-....|.|+++..
T Consensus 226 eG~V--DFIFG~------g~A~Fe~C~I~s~~~~~~~g~~~~~G~I-TA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 226 QGSI--DFIFGD------ARSLYENCRLISMANPVPPGSKSINGAV-TAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred cccc--cEEecc------ceEEEEccEEEEecCCcccccccCceEE-EecCCCCCCCCceEEEECCEEcc
Confidence 9543 344553 2568888888743211 122 33332 1333467799998876
No 123
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=48.37 E-value=1.4e+02 Score=32.30 Aligned_cols=123 Identities=10% Similarity=0.060 Sum_probs=69.2
Q ss_pred cCCeeEEEEeeEEECCCCC------CCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEE
Q 009075 282 VYSSNILVQGITIIAPVTS------PNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTC 355 (544)
Q Consensus 282 ~~~~nv~I~~~~I~~~~~~------~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~ 355 (544)
...+++..+|++|.+.... ..+-.+.+ .+..+.+.+|.|....|-+-....-...+.. ......-.++||++
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv-~GDra~fy~C~flG~QDTLy~~~~~~~~~~~-~~~~gRqYf~~CyI 280 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRT-DGDKVQIENVNILGRQDTFFVTNSGVQNRLE-TDRQPRTYVKNSYI 280 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE-cCCcEEEEeeEEecccceeeecccccccccc-ccccccEEEEeCEE
Confidence 4568899999999986521 11222322 3678889999999877877653210000000 00123568889999
Q ss_pred eCCCCceEEEcccccCCeEEEEEEeeEEEcCCc----eEEEEeecC-CCCceeeEEEEeeEeccc
Q 009075 356 ISPYSATIALGSEMSGGIQDVRAEDIKAINTES----GVRIKTAVG-RGGYVKDIYVRGMTMHTM 415 (544)
Q Consensus 356 ~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~----Gi~Ikt~~g-~~g~v~nI~~~ni~~~~v 415 (544)
.+.- -+-+|. -...|+||+|.-... .-.| +.+. ....-....|.|+++...
T Consensus 281 eG~V--DFIFG~------g~AvFenC~I~s~~~~~~~~g~I-TA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 281 EGDV--DFVFGR------GAVVFDNTEFRVVNSRTQQEAYV-FAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred eecc--cEEccC------ceEEEEcCEEEEecCCCCCceEE-EecCCCCCCCCEEEEECCEEecC
Confidence 8543 344453 256788888865321 1222 2221 112334578888888764
No 124
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=42.32 E-value=26 Score=20.57 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=9.7
Q ss_pred EEEEEeeEEEcCCc-eEEEE
Q 009075 375 DVRAEDIKAINTES-GVRIK 393 (544)
Q Consensus 375 nI~v~n~~~~~~~~-Gi~Ik 393 (544)
+++|++|++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 45555555555543 55443
No 125
>PRK09752 adhesin; Provisional
Probab=35.89 E-value=9e+02 Score=29.82 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=18.0
Q ss_pred EEEEEeeEEEcC---CceEEEEeecCCCCceeeEEEEeeE
Q 009075 375 DVRAEDIKAINT---ESGVRIKTAVGRGGYVKDIYVRGMT 411 (544)
Q Consensus 375 nI~v~n~~~~~~---~~Gi~Ikt~~g~~g~v~nI~~~ni~ 411 (544)
++.|.|+.|.+. ..|-.|........++=|+++.+..
T Consensus 223 ~liI~NSsFtnNsA~~~GGAIY~~s~t~p~~~n~~~d~~~ 262 (1250)
T PRK09752 223 YTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSY 262 (1250)
T ss_pred eEEEeccEEEccccCCcceEEEecCCCCceEEEEEecccc
Confidence 456666666654 2344444433233444455554443
No 126
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=34.23 E-value=74 Score=23.75 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=12.2
Q ss_pred cchhhhHHHHHHHHHhh
Q 009075 74 SQVTKLVPLLIVVALLS 90 (544)
Q Consensus 74 ~~~~~~~~~l~l~~~~~ 90 (544)
||+|.+|.+++|+++-+
T Consensus 1 MRTL~LLaAlLLlAlqa 17 (52)
T PF00879_consen 1 MRTLALLAALLLLALQA 17 (52)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 57788888887766554
No 127
>PHA00672 hypothetical protein
Probab=30.17 E-value=88 Score=27.74 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=22.7
Q ss_pred cEEEEcCCeEEeeeEEEeeeeEEeeecCcEEE
Q 009075 152 AQLYVPAGKWLTGSFNLISHFTLYLHKDAFLL 183 (544)
Q Consensus 152 ~~v~iP~G~Yl~g~i~l~S~~tl~l~~ga~l~ 183 (544)
-++.||+|+-++|.+.--+++ |.+....++.
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~-ii~sG~itV~ 80 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTV-LIFSGHATVF 80 (152)
T ss_pred EEEeccCceeeeeeeeEeeEE-EEecccEEEE
Confidence 368899999999988877777 5555444443
No 128
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=27.24 E-value=2e+02 Score=24.81 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred EEEEeeecEEEEeeEEeeCCCCCccccCCe--------eEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecC---
Q 009075 256 MEFMYTDNIQISSLTLLNSPSWNVHPVYSS--------NILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSG--- 324 (544)
Q Consensus 256 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~--------nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~g--- 324 (544)
.......+++++++++.++..++..+.... +..+.+..+..... .+..||++..+.+..+.++.+. .
T Consensus 39 ~~~i~~~~~~~~G~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~N~~~~~~~-~~~~Gi~~~~~~~~~~~~N~i~-~~~~ 116 (146)
T smart00722 39 NITINSNDVRVDGITIGGSTVTGIYVSASGDGVIQNTGKNLIIDNVTINGTE-GSGAGIVVTAGSEGLFIGNRII-TNND 116 (146)
T ss_pred EEEEeCCCCEEECeEEEeEEeeCcccccCCceEecCccccEEEcceecCCCc-cceEEEEEECCccceEecCeEE-eecC
Q ss_pred CceeeccCCCCccCccccCceeeEEEEE-EEEeCCCCceEEE
Q 009075 325 DDCVAVKSGWDEYGIAYGMPTKQLVIRR-LTCISPYSATIAL 365 (544)
Q Consensus 325 DD~Iai~sg~~~~G~~~~~~s~nI~I~n-~~~~~~~~~gIsI 365 (544)
.+++.+.. ..+..+.+ ....... +|+.+
T Consensus 117 g~G~~~~~------------~~~~~~~~~~~~~~~~-~Gi~~ 145 (146)
T smart00722 117 GDGNYLSD------------SSGGDLIGNRIYDNGR-DGIAV 145 (146)
T ss_pred CCCEEEeC------------CCCcEEEcceeEecCC-CcEee
No 129
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.14 E-value=2.5e+02 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHhhccCCCCC--cEEEEcCCeEEeeeEE
Q 009075 130 TSNTKAFKDAINQLSQYSSDGG--AQLYVPAGKWLTGSFN 167 (544)
Q Consensus 130 tddT~Aiq~AI~~~~~~~~~gg--~~v~iP~G~Yl~g~i~ 167 (544)
.++...||+|--.+.. ..- ...-+++|+|-+..++
T Consensus 59 ~~~~~~f~ractsit~---dpv~~~f~~Lk~G~YAvaa~q 95 (151)
T COG4704 59 MSDPSRFQRACTSITG---DPVSKSFYGLKPGKYAVAAFQ 95 (151)
T ss_pred CCCchHHhhhcccccC---CchhheeecCCCccEEEEEEE
Confidence 4678888888655532 111 1222799999886655
No 130
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=20.04 E-value=99 Score=29.64 Aligned_cols=27 Identities=33% Similarity=0.732 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHhhccCCCCCcEEEEcCCeE
Q 009075 131 SNTKAFKDAINQLSQYSSDGGAQLYVPAGKW 161 (544)
Q Consensus 131 ddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Y 161 (544)
.+.+++++|.+.+. +|+..++||+|+-
T Consensus 83 ~~~~~~~~~~~~L~----~G~~l~IFPEGtr 109 (210)
T cd07986 83 KNRESLREALRHLK----NGGALIIFPAGRV 109 (210)
T ss_pred hhHHHHHHHHHHHh----CCCEEEEECCccc
Confidence 56778888888885 5778889999984
Done!