AmiGO: BLAST Results


BLAST match view associations BLAST with AT1G60900 AT1G60900 AT1G60900	protein from Arabidopsis thaliana	9.9e-142
BLAST match view associations BLAST with ATU2AF65A ATU2AF65A ATU2AF65A AT4G36690	protein from Arabidopsis thaliana	3.4e-141
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 U2 small nuclear RNA auxiliary factor 2	protein from Bos taurus	1.2e-58
BLAST match view associations BLAST with u2af2a u2af2a u2af2a U2 small nuclear RNA auxiliary factor 2a	gene_product from Danio rerio	2.5e-58
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 Splicing factor U2AF 65 kDa subunit	protein from Homo sapiens	3.2e-58
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 Uncharacterized protein	protein from Canis lupus familiaris	4.0e-58
BLAST match view associations BLAST with U2af2 U2af2 U2af2 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein from Mus musculus	4.0e-58
BLAST match view associations BLAST with LOC690372 LOC690372 LOC690372 similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b	gene from Rattus norvegicus	4.0e-58
BLAST match view associations BLAST with u2af2b u2af2b u2af2b U2 small nuclear RNA auxiliary factor 2b	gene_product from Danio rerio	5.9e-57
BLAST match view associations BLAST with U2af50 U2af50 U2af50 U2 small nuclear riboprotein auxiliary factor 50	protein from Drosophila melanogaster	5.6e-52
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 Splicing factor U2AF 65 kDa subunit	protein from Homo sapiens	1.1e-50
BLAST match view associations BLAST with LS2 LS2 LS2 Large Subunit 2	protein from Drosophila melanogaster	2.7e-45
BLAST match view associations BLAST with u2af2 u2af2 u2af2 U2 snRNP auxiliary factor large subunit	gene from Dictyostelium discoideum	1.2e-44
BLAST match view associations BLAST with uaf-1 uaf-1 uaf-1	gene from Caenorhabditis elegans	8.0e-37
BLAST match view associations BLAST with PF14_0656 PF14_0656 PF14_0656 U2 snRNP auxiliary factor, putative	gene from Plasmodium falciparum	7.9e-28
BLAST match view associations BLAST with PF14_0656 PF14_0656 PF14_0656 U2 snRNP auxiliary factor, putative	protein from Plasmodium falciparum 3D7	7.9e-28
BLAST match view associations BLAST with AT1G60830 AT1G60830 AT1G60830	protein from Arabidopsis thaliana	7.5e-13
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	4.4e-11
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	5.7e-11
BLAST match view associations BLAST with F1P133 F1P133 F1P133 Uncharacterized protein	protein from Gallus gallus	9.4e-11
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	9.7e-11
BLAST match view associations BLAST with RBM38 RBM38 RBM38 Uncharacterized protein	protein from Bos taurus	2.0e-10
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	2.0e-10
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	protein from Mus musculus	2.6e-10
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	gene from Rattus norvegicus	2.6e-10
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	3.9e-10
BLAST match view associations BLAST with CG10466 CG10466 CG10466	protein from Drosophila melanogaster	7.2e-10
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RBM24 protein	protein from Bos taurus	1.2e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Homo sapiens	1.2e-09
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	protein from Mus musculus	1.2e-09
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	gene from Rattus norvegicus	1.2e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	1.2e-09
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Gallus gallus	1.4e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	1.4e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	1.6e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	1.7e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	1.9e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	1.9e-09
BLAST match view associations BLAST with AT5G09880 AT5G09880 AT5G09880	protein from Arabidopsis thaliana	1.9e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	2.0e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Pongo abelii	2.0e-09
BLAST match view associations BLAST with Cstf2 Cstf2 Cstf2 cleavage stimulation factor, 3' pre-RNA subunit 2	protein from Mus musculus	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	2.1e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	2.1e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	2.1e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	2.1e-09
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	protein from Mus musculus	2.2e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	2.2e-09
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA-binding motif protein, X-linked 2	protein from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with rbm24-b rbm24-b rbm24-b RNA-binding protein 24-B	protein from Xenopus laevis	2.4e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	2.4e-09
BLAST match view associations BLAST with rbm24-a rbm24-a rbm24-a RNA-binding protein 24-A	protein from Xenopus laevis	2.5e-09
BLAST match view associations BLAST with rbm24 rbm24 rbm24 RNA-binding protein 24	protein from Xenopus (Silurana) tropicalis	2.7e-09
BLAST match view associations BLAST with rbm38 rbm38 rbm38 RNA binding motif protein 38	gene_product from Danio rerio	3.2e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	3.3e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	4.1e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Gallus gallus	4.2e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	4.3e-09
BLAST match view associations BLAST with AT2G33435 AT2G33435 AT2G33435	protein from Arabidopsis thaliana	4.3e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Bos taurus	4.4e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Canis lupus familiaris	4.4e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Splicing factor 3B subunit 4	protein from Homo sapiens	4.4e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Sus scrofa	4.4e-09
BLAST match view associations BLAST with Sf3b4 Sf3b4 Sf3b4 splicing factor 3b, subunit 4	protein from Mus musculus	4.4e-09
BLAST match view associations BLAST with Sf3b4 Sf3b4 Sf3b4 splicing factor 3b, subunit 4	gene from Rattus norvegicus	4.4e-09
BLAST match view associations BLAST with rbm24a rbm24a rbm24a RNA binding motif protein 24a	gene_product from Danio rerio	4.4e-09
BLAST match view associations BLAST with CstF-64 CstF-64 CstF-64 Cleavage stimulation factor 64 kilodalton subunit	protein from Drosophila melanogaster	4.5e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 RNA-binding motif protein, X-linked 2	protein from Homo sapiens	8.0e-09
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	9.7e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Bos taurus	1.2e-08
BLAST match view associations BLAST with cstf2 cstf2 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2	gene_product from Danio rerio	1.2e-08
BLAST match view associations BLAST with sf3b4 sf3b4 sf3b4 splicing factor 3b, subunit 4	gene_product from Danio rerio	1.2e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	1.5e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Sus scrofa	1.8e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Cleavage stimulation factor subunit 2 tau variant	protein from Homo sapiens	1.8e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	gene from Rattus norvegicus	1.8e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein from Mus musculus	1.8e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	1.8e-08
BLAST match view associations BLAST with Rbp4 Rbp4 Rbp4 RNA-binding protein 4	protein from Drosophila melanogaster	2.0e-08
BLAST match view associations BLAST with rbm24b rbm24b rbm24b RNA binding motif protein 24b	gene_product from Danio rerio	3.1e-08
BLAST match view associations BLAST with LOC534630 LOC534630 LOC534630 Uncharacterized protein	protein from Bos taurus	4.2e-08
BLAST match view associations BLAST with DDB_G0285403 DDB_G0285403 DDB_G0285403 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	4.3e-08
BLAST match view associations BLAST with rbmx2 rbmx2 rbmx2 RNA binding motif protein, X-linked 2	gene_product from Danio rerio	4.9e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	5.2e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	5.2e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Uncharacterized protein	protein from Canis lupus familiaris	5.6e-08
BLAST match view associations BLAST with CSTF64 CSTF64 CSTF64 AT1G71800	protein from Arabidopsis thaliana	5.6e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding protein 39	protein from Homo sapiens	6.0e-08
BLAST match view associations BLAST with emb2444 emb2444 emb2444 AT2G18510	protein from Arabidopsis thaliana	6.1e-08
BLAST match view associations BLAST with CPS_0338 CPS_0338 CPS_0338 RNA-binding protein	protein from Colwellia psychrerythraea 34H	6.7e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  009076
        (544 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi...  1386  9.9e-142  1
TAIR|locus:2115280 - symbol:ATU2AF65A species:3702 "Arabi...  1381  3.4e-141  1
UNIPROTKB|Q24JZ8 - symbol:U2AF2 "Uncharacterized protein"...   602  1.2e-58   1
ZFIN|ZDB-GENE-050706-131 - symbol:u2af2a "U2 small nuclea...   599  2.5e-58   1
UNIPROTKB|P26368 - symbol:U2AF2 "Splicing factor U2AF 65 ...   598  3.2e-58   1
UNIPROTKB|E2R0G3 - symbol:U2AF2 "Uncharacterized protein"...   597  4.0e-58   1
MGI|MGI:98886 - symbol:U2af2 "U2 small nuclear ribonucleo...   597  4.0e-58   1
RGD|1597319 - symbol:LOC690372 "similar to U2 (RNU2) smal...   597  4.0e-58   1
ZFIN|ZDB-GENE-040426-1881 - symbol:u2af2b "U2 small nucle...   586  5.9e-57   1
FB|FBgn0005411 - symbol:U2af50 "U2 small nuclear riboprot...   539  5.6e-52   1
UNIPROTKB|K7ENG2 - symbol:U2AF2 "Splicing factor U2AF 65 ...   527  1.1e-50   1
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722...   476  2.7e-45   1
DICTYBASE|DDB_G0286395 - symbol:u2af2 "U2 snRNP auxiliary...   425  1.2e-44   2
WB|WBGene00006697 - symbol:uaf-1 species:6239 "Caenorhabd...   396  8.0e-37   1
ASPGD|ASPL0000008688 - symbol:AN6681 species:162425 "Emer...   336  5.0e-30   1
GENEDB_PFALCIPARUM|PF14_0656 - symbol:PF14_0656 "U2 snRNP...   267  7.9e-28   2
UNIPROTKB|Q8IKE9 - symbol:PF14_0656 "U2 snRNP auxiliary f...   267  7.9e-28   2
POMBASE|SPBC146.07 - symbol:prp2 "U2AF large subunit (U2A...   216  4.1e-15   1
TAIR|locus:2025860 - symbol:AT1G60830 species:3702 "Arabi...   175  7.5e-13   1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"...   159  4.4e-11   1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ...   158  5.7e-11   1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein...   156  9.4e-11   1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ...   166  9.7e-11   1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"...   164  2.0e-10   1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p...   153  2.0e-10   1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein...   163  2.6e-10   1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"...   163  2.6e-10   1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"...   162  3.9e-10   1
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ...   148  7.2e-10   1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"...   158  1.2e-09   1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ...   158  1.2e-09   1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein...   158  1.2e-09   1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"...   158  1.2e-09   1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac...   167  1.2e-09   1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ...   153  1.4e-09   1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"...   167  1.4e-09   1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"...   167  1.6e-09   1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ...   155  1.7e-09   1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p...   167  1.9e-09   1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p...   167  1.9e-09   1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi...   135  1.9e-09   2
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac...   167  2.0e-09   1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p...   167  2.0e-09   1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"...   167  2.0e-09   1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac...   167  2.0e-09   1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac...   167  2.0e-09   1
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact...   167  2.0e-09   1
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"...   167  2.1e-09   1
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac...   167  2.1e-09   1
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p...   167  2.1e-09   1
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac...   167  2.1e-09   1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein...   162  2.2e-09   1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"...   167  2.2e-09   1
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei...   162  2.2e-09   1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"...   158  2.2e-09   1
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-...   162  2.2e-09   1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24...   154  2.4e-09   1
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac...   167  2.4e-09   1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24...   154  2.5e-09   1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ...   154  2.7e-09   1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot...   156  3.2e-09   1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro...   142  3.3e-09   1
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"...   160  3.7e-09   1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ...   155  4.1e-09   1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"...   111  4.2e-09   2
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"...   160  4.3e-09   1
TAIR|locus:1005716652 - symbol:AT2G33435 species:3702 "Ar...   167  4.3e-09   1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"...   111  4.4e-09   2
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"...   111  4.4e-09   2
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun...   111  4.4e-09   2
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"...   111  4.4e-09   2
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni...   111  4.4e-09   2
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4...   111  4.4e-09   2
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif...   153  4.4e-09   1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac...   162  4.5e-09   1
UNIPROTKB|Q9Y388 - symbol:RBMX2 "RNA-binding motif protei...   157  8.0e-09   1
POMBASE|SPBC3B9.11c - symbol:ctf1 "mRNA cleavage and poly...   158  8.4e-09   1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein...   159  9.7e-09   1
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"...   156  1.2e-08   1
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati...   159  1.2e-08   1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3...   111  1.2e-08   2
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein...   159  1.5e-08   1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein...   159  1.8e-08   1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa...   159  1.8e-08   1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,...   159  1.8e-08   1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein...   159  1.8e-08   1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac...   159  1.8e-08   1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei...   145  1.8e-08   2
FB|FBgn0010258 - symbol:Rbp4 "RNA-binding protein 4" spec...   156  2.0e-08   1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti...   148  3.1e-08   1
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot...   151  4.2e-08   1
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding...   124  4.3e-08   3
ZFIN|ZDB-GENE-050626-88 - symbol:rbmx2 "RNA binding motif...   153  4.9e-08   1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s...   131  5.2e-08   1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s...   131  5.2e-08   1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"...   147  5.6e-08   2
TAIR|locus:2013016 - symbol:CSTF64 "cleavage stimulating ...   153  5.6e-08   2
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1...   148  6.0e-08   2
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244...   100  6.1e-08   2
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ...   130  6.7e-08   1

WARNING:  Descriptions of 339 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2206001 [details] [associations]
            symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
            HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
            IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
            UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
            PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
            KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
            OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
            Genevestigator:Q8L716 Uniprot:Q8L716
        Length = 589

 Score = 1386 (493.0 bits), Expect = 9.9e-142, P = 9.9e-142
 Identities = 268/300 (89%), Positives = 282/300 (94%)

Query:   213 MFPNMFPLVTGQ-FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAA 271
             MF NMFP+V GQ  GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+A
Sbjct:   222 MFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSA 281

Query:   272 IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNP 331
             IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII EG PVKVRRP+DYNP
Sbjct:   282 IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNP 341

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SLAATLGPSQPNPNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFTE QIRELLESFGPL
Sbjct:   342 SLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPL 401

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPE 451
             RGF+LVKDRETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPE
Sbjct:   402 RGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPE 461

Query:   452 QESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             QE VLL+AQQQIALQRLM QPG  P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKF
Sbjct:   462 QEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKF 521


>TAIR|locus:2115280 [details] [associations]
            symbol:ATU2AF65A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0042742 "defense
            response to bacterium" evidence=IEP] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 GO:GO:0042742 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL161589 GO:GO:0000398 EMBL:Z99708 HSSP:P26368 EMBL:AF462805
            EMBL:AY080711 EMBL:AY143980 EMBL:BT000965 EMBL:BX827587
            IPI:IPI00524736 IPI:IPI00525889 IPI:IPI00534734 PIR:C85433
            RefSeq:NP_195387.1 RefSeq:NP_849509.1 RefSeq:NP_974695.1
            UniGene:At.21204 ProteinModelPortal:O23212 SMR:O23212 IntAct:O23212
            STRING:O23212 PaxDb:O23212 PRIDE:O23212 EnsemblPlants:AT4G36690.1
            GeneID:829822 KEGG:ath:AT4G36690 TAIR:At4g36690 eggNOG:NOG298004
            HOGENOM:HOG000180745 InParanoid:O23212 KO:K12837 OMA:EDIRMEA
            PhylomeDB:O23212 ProtClustDB:CLSN2915914 Genevestigator:O23212
            TIGRFAMs:TIGR01642 Uniprot:O23212
        Length = 573

 Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
 Identities = 266/300 (88%), Positives = 285/300 (95%)

Query:   213 MFPNMFPLVTGQ-FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAA 271
             MFPNMFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA
Sbjct:   206 MFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAA 265

Query:   272 IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNP 331
             +GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNP
Sbjct:   266 VGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNP 325

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SLAATLGPSQP+P+LNLAAVGLTPG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L
Sbjct:   326 SLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGL 385

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPE 451
             +GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG    KPE
Sbjct:   386 KGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPE 445

Query:   452 QESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             QE+VLLHAQQQIA QR+MLQPG+V + VVCLTQVV+ DEL+DDEEY +I+EDMRQEGGKF
Sbjct:   446 QENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKF 505


>UNIPROTKB|Q24JZ8 [details] [associations]
            symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
            GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
            KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
            HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
            EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
            UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
            Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
            InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
        Length = 475

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 135/299 (45%), Positives = 184/299 (61%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 276
             + P +T    A+   PV  +  Q TR ARR+YVG +P    E+++  FF+  M  +GG T
Sbjct:   121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLT 179

Query:   277 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 336
               PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G  +K+RRP DY P    +
Sbjct:   180 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS 239

Query:   337 LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
               PS   P +    V   P SA       ++F+GGLP Y  + Q++ELL SFGPL+ F+L
Sbjct:   240 ENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESV 455
             VKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N       S 
Sbjct:   291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPLST 350

Query:   456 LLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E GK+
Sbjct:   351 INQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECGKY 409


>ZFIN|ZDB-GENE-050706-131 [details] [associations]
            symbol:u2af2a "U2 small nuclear RNA auxiliary
            factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
            GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
            IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
            Uniprot:E7F8Y4
        Length = 470

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 131/298 (43%), Positives = 186/298 (62%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 276
             + P +T +  A+   PV  +  Q TR ARR+YVG +P    E+S+  FF+  M  +GG T
Sbjct:   114 LLPTMTPEGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMR-LGGLT 172

Query:   277 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 336
               PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G  +K+RRP DY P    +
Sbjct:   173 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS 232

Query:   337 LGPSQPNP-NLNLAAVG-LTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGF 394
               PS   P +L +  V  + P SA       ++F+GGLP Y  + Q++ELL SFGPL+ F
Sbjct:   233 ENPSVYVPGSLPVGVVSTVVPDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAF 286

Query:   395 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQE 453
             +LVKD  TG SKGYAFC Y D++++D A A LNG+++GDK L V+RA+ G+ N       
Sbjct:   287 NLVKDSATGLSKGYAFCEYVDVNISDQAIAGLNGMQLGDKKLLVQRASVGSKNTTLTGIN 346

Query:   454 SVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
                +  Q    +   + Q G +P++V+CL  +V+ +EL DDEEYEEI+ED+R E  K+
Sbjct:   347 QTPVTLQVPGLMNSSVNQMGGIPTEVLCLMNMVAPEELLDDEEYEEIVEDVRDECSKY 404


>UNIPROTKB|P26368 [details] [associations]
            symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
            "C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
            evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
            EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
            GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
            eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
            OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
            EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
            RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
            PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
            PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
            PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
            SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
            STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
            PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
            Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
            UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
            HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
            HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
            PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
            GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
            CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
            Uniprot:P26368
        Length = 475

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 134/299 (44%), Positives = 183/299 (61%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 276
             + P +T    A+   PV  +  Q TR ARR+YVG +P    E+++  FF+  M  +GG T
Sbjct:   121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLT 179

Query:   277 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 336
               PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G  +K+RRP DY P    +
Sbjct:   180 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS 239

Query:   337 LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
               PS   P +    V   P SA       ++F+GGLP Y  + Q++ELL SFGPL+ F+L
Sbjct:   240 ENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESV 455
             VKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N       S 
Sbjct:   291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 350

Query:   456 LLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+
Sbjct:   351 INQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY 409


>UNIPROTKB|E2R0G3 [details] [associations]
            symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
            OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
            ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
            GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
        Length = 471

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 132/295 (44%), Positives = 179/295 (60%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 276
             + P +T    A+   PV  +  Q TR ARR+YVG +P    E+++  FF+  M  +GG T
Sbjct:   121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLT 179

Query:   277 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 336
               PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G  +K+RRP DY P    +
Sbjct:   180 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS 239

Query:   337 LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
               PS   P +    V   P SA       ++F+GGLP Y  + Q++ELL SFGPL+ F+L
Sbjct:   240 ENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVL 456
             VKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA        +  
Sbjct:   291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350

Query:   457 LHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
                 Q   L    +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+
Sbjct:   351 PVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY 405


>MGI|MGI:98886 [details] [associations]
            symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
            factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
            [GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
            GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
            KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
            HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
            IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
            PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
            STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
            Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
            UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
            Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
            Uniprot:P26369
        Length = 475

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 134/299 (44%), Positives = 183/299 (61%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 276
             + P +T    A+   PV  +  Q TR ARR+YVG +P    E+++  FF+  M  +GG T
Sbjct:   121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLT 179

Query:   277 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 336
               PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G  +K+RRP DY P    +
Sbjct:   180 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS 239

Query:   337 LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
               PS   P +    V   P SA       ++F+GGLP Y  + Q++ELL SFGPL+ F+L
Sbjct:   240 ENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESV 455
             VKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N       S 
Sbjct:   291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPST 350

Query:   456 LLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+
Sbjct:   351 INQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY 409


>RGD|1597319 [details] [associations]
            symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
            auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
            binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
            finger domain binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
            KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
            RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
            SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
            KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
        Length = 475

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 134/299 (44%), Positives = 183/299 (61%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 276
             + P +T    A+   PV  +  Q TR ARR+YVG +P    E+++  FF+  M  +GG T
Sbjct:   121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLT 179

Query:   277 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 336
               PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G  +K+RRP DY P    +
Sbjct:   180 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS 239

Query:   337 LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
               PS   P +    V   P SA       ++F+GGLP Y  + Q++ELL SFGPL+ F+L
Sbjct:   240 ENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESV 455
             VKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N       S 
Sbjct:   291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPST 350

Query:   456 LLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+
Sbjct:   351 INQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY 409


>ZFIN|ZDB-GENE-040426-1881 [details] [associations]
            symbol:u2af2b "U2 small nuclear RNA auxiliary
            factor 2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0046660 "female sex differentiation" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1881 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
            eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
            HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:BX950195 EMBL:BC065869
            IPI:IPI00502836 RefSeq:NP_991252.1 UniGene:Dr.77328 SMR:Q6P022
            STRING:Q6P022 Ensembl:ENSDART00000023571 GeneID:402989
            KEGG:dre:402989 CTD:402989 InParanoid:Q6P022 OMA:HERDKEN
            NextBio:20816796 Uniprot:Q6P022
        Length = 475

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 129/296 (43%), Positives = 179/296 (60%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 276
             + P +T    A+   PV  +  Q TR ARR+YVG +P    E+S+  FF+  M  +GG T
Sbjct:   124 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMR-LGGLT 182

Query:   277 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 336
               PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+   +K+RRP DY P    +
Sbjct:   183 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQAQSLKIRRPHDYQPLPGMS 242

Query:   337 LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
               PS   P +    V   P S        ++F+GGLP Y  + Q++ELL SFGPL+ F+L
Sbjct:   243 ENPSVYVPGVVSTVV---PDSI------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 293

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESV 455
             VKD  TG SKGYAFC Y D++V D A A LNG+++ DK L V+RA+ GA N         
Sbjct:   294 VKDSATGLSKGYAFCEYVDVNVNDQAIAGLNGMQLADKKLLVQRASVGAKNATMTSINET 353

Query:   456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
              +  Q        M+Q G +P++V+CL  +V+ +EL DDEEYEEI+ED+++E  K+
Sbjct:   354 PVTLQVPGLTSNPMIQMGGIPTEVLCLMNMVAPEELIDDEEYEEIVEDVKEECSKY 409


>FB|FBgn0005411 [details] [associations]
            symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
            50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
            snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
            evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
            evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
            evidence=NAS] [GO:0046982 "protein heterodimerization activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
            "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
            organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
            evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
            GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
            GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
            GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
            TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
            RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
            ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
            MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
            EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
            KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
            InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
            GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
            Uniprot:Q24562
        Length = 416

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 121/283 (42%), Positives = 168/283 (59%)

Query:   229 PVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI 288
             P   V  +    TR ARR+YVG +P    E+ +  FF+Q M  +G   A  G  V+   I
Sbjct:    77 PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAA-GSPVLACQI 135

Query:   289 NHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNL 348
             N +K FAF+E RS++E + AMA DGI  +G  +K+RRP DY P    T       P +  
Sbjct:   136 NLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGIT-----DTPAIKP 190

Query:   349 AAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY 408
             A V     S    + P +IF+GGLP Y  + Q++ELL SFG LR F+LVKD  TG SKGY
Sbjct:   191 AVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGY 250

Query:   409 AFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRL 468
             AFC Y DLS+TD + A LNG+++GDK L V+RA+ GA   +    +      Q   L  +
Sbjct:   251 AFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNV 310

Query:   469 MLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             +   G  P++V+CL  +V+ DEL+D+EEYE+ILED+++E  K+
Sbjct:   311 VTS-GP-PTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKY 351


>UNIPROTKB|K7ENG2 [details] [associations]
            symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
            EMBL:AC008735 TIGRFAMs:TIGR01642 HGNC:HGNC:23156
            Ensembl:ENST00000590551 Uniprot:K7ENG2
        Length = 307

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 116/248 (46%), Positives = 154/248 (62%)

Query:   264 FFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323
             FF+  M  +GG T  PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G  +K+
Sbjct:     4 FFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 62

Query:   324 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRE 383
             RRP DY P    +  PS   P +    V   P SA       ++F+GGLP Y  + Q++E
Sbjct:    63 RRPHDYQPLPGMSENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKE 113

Query:   384 LLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443
             LL SFGPL+ F+LVKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ 
Sbjct:   114 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 173

Query:   444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILED 503
             GA        +      Q   L    +Q G  P++V+CL  +V  +EL DDEEYEEI+ED
Sbjct:   174 GAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVED 233

Query:   504 MRQEGGKF 511
             +R E  K+
Sbjct:   234 VRDECSKY 241


>FB|FBgn0034834 [details] [associations]
            symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
            melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
            "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0060968 "regulation of gene silencing"
            evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
            evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
            HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
            ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
            PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
            OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
        Length = 449

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 114/289 (39%), Positives = 167/289 (57%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGP----GDAVVNVYINH 290
             A     TR ARR+YVG +P    ++ +  FF+  + A+G          G+AV+    N 
Sbjct:   101 AAISMITRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNL 160

Query:   291 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNP--SLAATLGPSQPN---PN 345
             EK FAF+E RS++EAS A+  DG++F G  +K+RRP DY P  S++ +   S  +   P 
Sbjct:   161 EKNFAFLEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPA 220

Query:   346 LNLA---AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402
             +N+A   AV L P +    + P++I+VGGLP    + Q++ELL+SFG L+G +LV D  T
Sbjct:   221 INVAQQPAVTL-PVTTIVPDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNT 279

Query:   403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQ 462
               +KG+AF  Y D SVTD A A L+G+ +GD+ L V+R+  G     P     +L     
Sbjct:   280 NLNKGFAFFEYCDPSVTDHAIAGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGI 339

Query:   463 IALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
               LQ     PGS P++ +CL  +V  +EL DDEE+E+I  D++QE  KF
Sbjct:   340 STLQ----DPGS-PTETLCLLNMVRPEELLDDEEFEDIRTDIKQECAKF 383


>DICTYBASE|DDB_G0286395 [details] [associations]
            symbol:u2af2 "U2 snRNP auxiliary factor large
            subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
            evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
            GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
            GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
            TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
            SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
            KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
        Length = 671

 Score = 425 (154.7 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
 Identities = 96/225 (42%), Positives = 133/225 (59%)

Query:   242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 301
             + +RR+YVG +PP  ++  +  FF+  + A   NT  PG  VV   IN  K FAF+E RS
Sbjct:   265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTK-PGPPVVFCQINAPKCFAFIEFRS 323

Query:   302 VEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL 361
              EEA+NAM  DGI  +   +K+RRP DY  +   T G +   P++        P +    
Sbjct:   324 PEEATNAMRFDGISLKNFTLKIRRPKDYQSTSDNTGGNASLLPSI-------VPTNVPDS 376

Query:   362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 421
             E  ++I+VGGLP   +E Q++ LL ++G L+ F+LVKD  TG SKG+AFC YQD  VTD+
Sbjct:   377 E--NKIYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDV 434

Query:   422 ACAALNGIKMGDKTLTVRRANQGANQP----KPEQESVLLHAQQQ 462
             AC+ LNGI + DKTL V+RA+ G+  P    K    +   H QQQ
Sbjct:   435 ACSKLNGIPLADKTLVVQRASIGSKPPGDASKGGDVTQQQHQQQQ 479

 Score = 70 (29.7 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
 Identities = 13/36 (36%), Positives = 25/36 (69%)

Query:   476 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             PS V+ +  +V  +++ DD+EY+ IL D+++E  +F
Sbjct:   567 PSCVIQILNLVDREDIFDDKEYDNILIDVKEECEQF 602


>WB|WBGene00006697 [details] [associations]
            symbol:uaf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
            "feminization of hermaphroditic germ-line" evidence=IMP]
            [GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
            development" evidence=IMP] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
            evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
            [GO:0010172 "embryonic body morphogenesis" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
            GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
            GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
            HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
            RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
            UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
            IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
            PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
            KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
            WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
            InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
            Uniprot:P90978
        Length = 496

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 95/217 (43%), Positives = 130/217 (59%)

Query:   233 VQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEK 292
             V  +    T  +RR+YVG +P   NE+++  FF+Q M   G   A PG+ ++   IN +K
Sbjct:   172 VPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQA-PGNPILLCQINLDK 230

Query:   293 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVG 352
              FAF+E RS++E +  MA DGI F G  +KVRRP DY PS        Q   ++N     
Sbjct:   231 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN----S 278

Query:   353 LTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCV 412
               P S   ++  ++IF+GGLP Y TE Q++ELL SFGPL+ F L  D + GNSKGYAF  
Sbjct:   279 RMPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAE 337

Query:   413 YQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPK 449
             Y D ++TD A A LNG+++GDK L V+ A   ANQ +
Sbjct:   338 YLDPTLTDQAIAGLNGMQLGDKQLVVQLAC--ANQQR 372

 Score = 310 (114.2 bits), Expect = 2.3e-27, P = 2.3e-27
 Identities = 77/173 (44%), Positives = 107/173 (61%)

Query:   339 PSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             PSQ   ++N       P S   ++  ++IF+GGLP Y TE Q++ELL SFGPL+ F L  
Sbjct:   269 PSQNTFDMN----SRMPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNV 324

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLH 458
             D + GNSKGYAF  Y D ++TD A A LNG+++GDK L V+ A   ANQ +    + L +
Sbjct:   325 DSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLAC--ANQQR--HNTNLPN 379

Query:   459 AQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             +   IA   L    G   ++++CL  +V+ DELK D+EYEEILED+R E  K+
Sbjct:   380 SASAIAGIDLSQGAGRA-TEILCLMNMVTEDELKADDEYEEILEDVRDECSKY 431


>ASPGD|ASPL0000008688 [details] [associations]
            symbol:AN6681 species:162425 "Emericella nidulans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000349 "generation of catalytic
            spliceosome for first transesterification step" evidence=IEA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
            [GO:0000243 "commitment complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001301 TIGRFAMs:TIGR01642
            ProteinModelPortal:C8V1L6 EnsemblFungi:CADANIAT00007466 OMA:CISAQIS
            Uniprot:C8V1L6
        Length = 547

 Score = 336 (123.3 bits), Expect = 5.0e-30, P = 5.0e-30
 Identities = 97/287 (33%), Positives = 148/287 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKF 294
             A+    +R A+R++V  LPP A  +++ +FF+  +   G N     D  ++  I+ +  F
Sbjct:   214 ALKPSNSRQAKRLFVYNLPPNATVENLVSFFN--LQLNGLNVIQSVDPCISAQISDDHSF 271

Query:   295 AFVEMRSVEEASNAMALDGIIF--------EGAP--VKVRRPSDYNPSLAATLGPSQPNP 344
             A +E +S  + + A+ALDGI           GA   ++VRRP DY       + P+    
Sbjct:   272 ALLEFKSPNDTTVALALDGITMGEHESNGENGAAKGLEVRRPKDY-------IVPNLAEQ 324

Query:   345 NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 404
             +L  A+     G     + P++I V  +P Y  E  +  LL+SFG L+ F LVKD  T  
Sbjct:   325 DLEGAS-----GMKDVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEE 379

Query:   405 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIA 464
             S+G AFC Y D + T IA   LNG+++GD+ L V RA+ G  Q       V  +A    A
Sbjct:   380 SRGIAFCEYADPNTTTIAVQGLNGMELGDRHLKVVRASIGMTQAAGLDMGV--NAMSMFA 437

Query:   465 LQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
               +   Q     S+V+ L  +V+ +EL D+E+YEEI +D+R E  KF
Sbjct:   438 --KTTSQDLE-SSRVLQLLNMVTPEELMDNEDYEEICDDVRDECSKF 481


>GENEDB_PFALCIPARUM|PF14_0656 [details] [associations]
            symbol:PF14_0656 "U2 snRNP auxiliary factor,
            putative" species:5833 "Plasmodium falciparum" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
            TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
            IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
            GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
            HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
            Uniprot:Q8IKE9
        Length = 833

 Score = 267 (99.0 bits), Expect = 7.9e-28, Sum P(2) = 7.9e-28
 Identities = 65/217 (29%), Positives = 112/217 (51%)

Query:   238 QQATRHARRVYVGGLPPTANEQSVATFFSQ-VMAAIGGNTAGP--GDA----VVNVYI-N 289
             Q   +  R++Y+G +PP + ++ V  FF+  ++A I  ++     GD     V+   I N
Sbjct:   449 QDTDKKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFN 508

Query:   290 HEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLA 349
              + +F F+E R+V+     + LD I +    +++ RP DY P        +    ++N+ 
Sbjct:   509 SDSRFCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMD 568

Query:   350 AVG-LTPGSAGGL----EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 404
                 L P     +    +  +R+++  LP+   + QI++LLE FG L+ F+++KD  TG 
Sbjct:   569 VFEKLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGL 628

Query:   405 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441
             +KGY F  Y+D S T +A  ALNG   G   L V++A
Sbjct:   629 NKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNVKKA 665

 Score = 81 (33.6 bits), Expect = 7.9e-28, Sum P(2) = 7.9e-28
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query:   473 GSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             G   SKVV LT  V  ++L  D +YEEIL+++++E  K+
Sbjct:   726 GEKSSKVVQLTNAVFQEDLIVDSQYEEILKEVKEEAEKY 764


>UNIPROTKB|Q8IKE9 [details] [associations]
            symbol:PF14_0656 "U2 snRNP auxiliary factor, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
            TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
            IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
            GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
            HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
            Uniprot:Q8IKE9
        Length = 833

 Score = 267 (99.0 bits), Expect = 7.9e-28, Sum P(2) = 7.9e-28
 Identities = 65/217 (29%), Positives = 112/217 (51%)

Query:   238 QQATRHARRVYVGGLPPTANEQSVATFFSQ-VMAAIGGNTAGP--GDA----VVNVYI-N 289
             Q   +  R++Y+G +PP + ++ V  FF+  ++A I  ++     GD     V+   I N
Sbjct:   449 QDTDKKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFN 508

Query:   290 HEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLA 349
              + +F F+E R+V+     + LD I +    +++ RP DY P        +    ++N+ 
Sbjct:   509 SDSRFCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMD 568

Query:   350 AVG-LTPGSAGGL----EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 404
                 L P     +    +  +R+++  LP+   + QI++LLE FG L+ F+++KD  TG 
Sbjct:   569 VFEKLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGL 628

Query:   405 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441
             +KGY F  Y+D S T +A  ALNG   G   L V++A
Sbjct:   629 NKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNVKKA 665

 Score = 81 (33.6 bits), Expect = 7.9e-28, Sum P(2) = 7.9e-28
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query:   473 GSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             G   SKVV LT  V  ++L  D +YEEIL+++++E  K+
Sbjct:   726 GEKSSKVVQLTNAVFQEDLIVDSQYEEILKEVKEEAEKY 764


>POMBASE|SPBC146.07 [details] [associations]
            symbol:prp2 "U2AF large subunit (U2AF-59)" species:4896
            "Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
            evidence=IDA] [GO:0000348 "mRNA branch site recognition"
            evidence=ISS] [GO:0000349 "generation of catalytic spliceosome for
            first transesterification step" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005686 "U2 snRNP" evidence=TAS] [GO:0030515 "snoRNA binding"
            evidence=TAS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR006529
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPBC146.07 GO:GO:0000166 EMBL:CU329671 GO:GO:0030515
            GO:GO:0003729 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
            GO:GO:0000243 GO:GO:0000349 GO:GO:0005686 GO:GO:0045292
            OrthoDB:EOG44XNS9 GO:GO:0000348 eggNOG:NOG298004 KO:K12837
            TIGRFAMs:TIGR01642 OMA:TQMGGLP EMBL:L22577 EMBL:AB027985 PIR:A48250
            RefSeq:NP_595396.1 ProteinModelPortal:P36629 IntAct:P36629
            STRING:P36629 PRIDE:P36629 EnsemblFungi:SPBC146.07.1 GeneID:2539645
            KEGG:spo:SPBC146.07 NextBio:20800799 Uniprot:P36629
        Length = 517

 Score = 216 (81.1 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 73/281 (25%), Positives = 135/281 (48%)

Query:   230 VMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDA-VVNVYI 288
             + P   +   A+R ARR+ V G+P    E +  +F   +   I      P      +V +
Sbjct:   184 IAPPPPLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLF--ISTTYHKPETKHFSSVNV 241

Query:   289 NHEKKFAFVEMRSVEEASNAMALDGIIFEGAP-VKVRRPSDYN-PSLAATLGPSQPNPNL 346
               E+ FA +E+ + E+A+    L    +     +K +R  +Y  P +   +  SQ   + 
Sbjct:   242 CKEENFAILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNYIVPQITPEV--SQKRSD- 298

Query:   347 NLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSK 406
             + A   +       L+  D+I++  LP    E Q+ ELL+ FG L  F L+K+   G+SK
Sbjct:   299 DYAKNDV-------LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSK 351

Query:   407 GYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ 466
             G+ FC +++ S  ++A + L+G       L  + A  G NQ   ++ + +    +   L 
Sbjct:   352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACVGLNQAMIDKSNGMAILTE---LA 408

Query:   467 RLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQE 507
             +   Q  S+P++V+ L  +++ DE+ D +EYE+I E ++ +
Sbjct:   409 KASSQ--SIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQ 447


>TAIR|locus:2025860 [details] [associations]
            symbol:AT1G60830 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC079675 HSSP:P26368 eggNOG:NOG298004 KO:K12837
            UniGene:At.52293 IPI:IPI00520905 PIR:G96633 RefSeq:NP_564764.1
            ProteinModelPortal:Q9C6C1 SMR:Q9C6C1 EnsemblPlants:AT1G60830.1
            GeneID:842376 KEGG:ath:AT1G60830 TAIR:At1g60830
            HOGENOM:HOG000152174 InParanoid:Q9C6C1 PhylomeDB:Q9C6C1
            Genevestigator:Q9C6C1 Uniprot:Q9C6C1
        Length = 111

 Score = 175 (66.7 bits), Expect = 7.5e-13, P = 7.5e-13
 Identities = 31/43 (72%), Positives = 38/43 (88%)

Query:   469 MLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 511
             MLQPG  P+K+VCLTQVV+AD+L+DD EY +I+EDM QEGGKF
Sbjct:     1 MLQPGGTPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKF 43


>UNIPROTKB|A5GFN7 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
            GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
            ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
            ArrayExpress:A5GFN7 Uniprot:A5GFN7
        Length = 193

 Score = 159 (61.0 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 43/127 (33%), Positives = 60/127 (47%)

Query:   341 QPNPNLNLAAVGLTPGSAGGLEGPDR------IFVGGLPYYFTEAQIRELLESFGPLRGF 394
             QP P    A     P + G + G  +      IFVGGLPY+ T+A +R+  E FG +   
Sbjct:     4 QPAPCAPSAGFPRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA 63

Query:   395 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 454
              ++ DR+TG S+GY F    D +  + AC   N    G K   V  A  GA +P+  Q  
Sbjct:    64 VVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGRKA-NVNLAYLGA-KPRSLQTG 121

Query:   455 VLLHAQQ 461
               +  QQ
Sbjct:   122 FAIGVQQ 128


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 158 (60.7 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 37/96 (38%), Positives = 52/96 (54%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQ 461
              N I  G K   V  A  GA +P+  Q    +  QQ
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRSLQTGFAIGVQQ 105


>UNIPROTKB|F1P133 [details] [associations]
            symbol:F1P133 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
            IPI:IPI00575891 ProteinModelPortal:F1P133
            Ensembl:ENSGALT00000006408 Uniprot:F1P133
        Length = 166

 Score = 156 (60.0 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 39/121 (32%), Positives = 63/121 (52%)

Query:   345 NLNLAAVGLTPGSAGGLEGPDR--IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402
             N   A +G++   +   E  D   +F+GGLPY  TE  +  +   +G +   +LV+D++T
Sbjct:    14 NAREAELGVSEAVSWHAEYKDSAWVFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKT 73

Query:   403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR-ANQGANQPKPEQESVL--LHA 459
             G SKG+ F  Y+D   T +A    NGIK+  +T+ V   AN    +   + + V   LHA
Sbjct:    74 GKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRPPKDSDDLDDVTKALHA 133

Query:   460 Q 460
             +
Sbjct:   134 K 134


>UNIPROTKB|Q9H0Z9 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA;IDA] [GO:0010830 "regulation of myotube
            differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
            [GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
            signal transduction by p53 class mediator resulting in
            transcription of p21 class mediator" evidence=IDA] [GO:0007050
            "cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
            of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
            GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
            GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
            HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
            EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
            RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
            ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
            PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
            Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
            KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
            H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
            neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
            EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
            ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
            Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
        Length = 239

 Score = 166 (63.5 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 55/158 (34%), Positives = 75/158 (47%)

Query:   335 ATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGF 394
             A   PS   P   LAA G   GS        +IFVGGLPY+ T+A +R+  E FG +   
Sbjct:     6 APCAPSAGFPR-PLAAPGAMHGSQKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDIEEA 63

Query:   395 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 454
              ++ DR+TG S+GY F    D +  + AC   N I  G K   V  A  GA +P+  Q  
Sbjct:    64 VVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA-NVNLAYLGA-KPRSLQTG 121

Query:   455 VLLHAQQ--QIALQRLM-LQPGSV-PSKVVCLTQVVSA 488
               +  QQ     +QR   L P  + P  +V  + V+ A
Sbjct:   122 FAIGVQQLHPTLIQRTYGLTPHYIYPPAIVQPSVVIPA 159


>UNIPROTKB|E1BLB7 [details] [associations]
            symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
            OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
            UniGene:Bt.106613 ProteinModelPortal:E1BLB7
            Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
            NextBio:20876057 Uniprot:E1BLB7
        Length = 239

 Score = 164 (62.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 51/158 (32%), Positives = 73/158 (46%)

Query:   341 QPNPNLNLAAVGLTPGSAGGLEGPDR------IFVGGLPYYFTEAQIRELLESFGPLRGF 394
             QP P    A     P + G + G  +      IFVGGLPY+ T+A +R+  E FG +   
Sbjct:     4 QPAPCAPSAGFSRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA 63

Query:   395 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 454
              ++ DR+TG S+GY F    D +  + AC   N    G K   V  A  GA +P+  Q  
Sbjct:    64 VVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGRKA-NVNLAYLGA-KPRSLQTG 121

Query:   455 VLLHAQQ--QIALQRLM-LQPGSV-PSKVVCLTQVVSA 488
               +  QQ     +QR   L P  + P  +V  + V+ A
Sbjct:   122 FAIGVQQVPPTLIQRTYGLTPHYIYPQAIVQPSVVIPA 159


>UNIPROTKB|K7GQZ8 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
            Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
        Length = 88

 Score = 153 (58.9 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 32/78 (41%), Positives = 41/78 (52%)

Query:   370 GGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI 429
             G +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   LNG 
Sbjct:     2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61

Query:   430 KMGDKTLTVRRANQGANQ 447
             +   + L V  A    N+
Sbjct:    62 EFSGRALRVDNAASEKNK 79


>MGI|MGI:1889294 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
            [GO:0006978 "DNA damage response, signal transduction by p53 class
            mediator resulting in transcription of p21 class mediator"
            evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
            "cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
            of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
            GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
            GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
            EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
            IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
            ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
            PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
            Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
            KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
            NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
            GermOnline:ENSMUSG00000027510 Uniprot:Q62176
        Length = 237

 Score = 163 (62.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 46/127 (36%), Positives = 65/127 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  D AC  
Sbjct:    33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQ--QIALQRLM-LQPGSV-PSKVVC 481
              N I  G K   V  A  GA +P+  Q    +  QQ     +QR   L P  + P  +V 
Sbjct:    93 PNPIIDGRKA-NVNLAYLGA-KPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPAIVQ 150

Query:   482 LTQVVSA 488
              + V+ A
Sbjct:   151 PSVVIPA 157


>RGD|1308503 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in transcription of p21 class mediator" evidence=IEA]
            [GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
            regulation of cell proliferation" evidence=IEA] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
            IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
            Uniprot:D3ZGE9
        Length = 237

 Score = 163 (62.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 46/127 (36%), Positives = 65/127 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  D AC  
Sbjct:    33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQ--QIALQRLM-LQPGSV-PSKVVC 481
              N I  G K   V  A  GA +P+  Q    +  QQ     +QR   L P  + P  +V 
Sbjct:    93 PNPIIDGRKA-NVNLAYLGA-KPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPAIVQ 150

Query:   482 LTQVVSA 488
              + V+ A
Sbjct:   151 PSVVIPA 157


>UNIPROTKB|A5GFN8 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
            HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
            CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
            SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
            GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
        Length = 239

 Score = 162 (62.1 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 51/158 (32%), Positives = 73/158 (46%)

Query:   341 QPNPNLNLAAVGLTPGSAGGLEGPDR------IFVGGLPYYFTEAQIRELLESFGPLRGF 394
             QP P    A     P + G + G  +      IFVGGLPY+ T+A +R+  E FG +   
Sbjct:     4 QPAPCAPSAGFPRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA 63

Query:   395 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 454
              ++ DR+TG S+GY F    D +  + AC   N    G K   V  A  GA +P+  Q  
Sbjct:    64 VVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGRKA-NVNLAYLGA-KPRSLQTG 121

Query:   455 VLLHAQQ--QIALQRLM-LQPGSV-PSKVVCLTQVVSA 488
               +  QQ     +QR   L P  + P  +V  + V+ A
Sbjct:   122 FAIGVQQLHPTLIQRTYGLTPHYIYPQAIVQPSVVIPA 159


>FB|FBgn0032822 [details] [associations]
            symbol:CG10466 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
            RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
            SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
            PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
            EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
            UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
            OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
            ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
        Length = 154

 Score = 148 (57.2 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IFV G PY  TE  +  +   +G +   +L++D +TG SKG+ F  Y+D   T +A   L
Sbjct:    36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNL 95

Query:   427 NGIKMGDKTLTV 438
             NGIK+ D+TL V
Sbjct:    96 NGIKILDRTLRV 107


>UNIPROTKB|A6QPJ1 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
            EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
            RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
            Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
            NextBio:20873922 Uniprot:A6QPJ1
        Length = 236

 Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 42/116 (36%), Positives = 60/116 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ-PGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ   L   ++Q P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ---LHPALIQRPFGIPAHYV 122


>UNIPROTKB|Q9BX46 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
            EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
            RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
            UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
            IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
            DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
            Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
            UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
            HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
            InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
            GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
            CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
        Length = 236

 Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 42/116 (36%), Positives = 60/116 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ-PGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ   L   ++Q P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ---LHPALIQRPFGIPAHYV 122


>MGI|MGI:3610364 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
            EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
            UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
            Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
            UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
        Length = 236

 Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 42/116 (36%), Positives = 60/116 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ-PGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ   L   ++Q P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ---LHPALIQRPFGIPAHYV 122


>RGD|1584029 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA;ISO]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
            OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
            UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
            Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
            NextBio:740266 Uniprot:D3ZLP6
        Length = 236

 Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 42/116 (36%), Positives = 60/116 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ-PGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ   L   ++Q P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ---LHPALIQRPFGIPAHYV 122


>UNIPROTKB|E9PID8 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
            HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
            Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
            Uniprot:E9PID8
        Length = 438

 Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|Q5ZJX4 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
            UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
            InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
        Length = 215

 Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 36/96 (37%), Positives = 52/96 (54%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQ 461
              N I  G K   V  A  GA +P+  Q    +  QQ
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRSIQTGFTIGVQQ 105


>UNIPROTKB|Q5ZLS0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
            EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
            UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
            Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
            NextBio:20824917 Uniprot:Q5ZLS0
        Length = 475

 Score = 167 (63.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|J9NX69 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
            Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
        Length = 509

 Score = 167 (63.8 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|Q5ZMA3 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
            IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
            ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
            KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
        Length = 225

 Score = 155 (59.6 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 41/116 (35%), Positives = 60/116 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ-PGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ   L   ++Q P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ---LHPALIQRPFGIPAHYV 122


>UNIPROTKB|F1S1L9 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
            Uniprot:F1S1L9
        Length = 551

 Score = 167 (63.8 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|K7GQE7 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
        Length = 555

 Score = 167 (63.8 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>TAIR|locus:2178198 [details] [associations]
            symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
            IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
            ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
            EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
            TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
            ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
        Length = 527

 Score = 135 (52.6 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 34/94 (36%), Positives = 52/94 (55%)

Query:   347 NLAAVGLTPGSAGGLEGPDR-IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNS 405
             NLA    T  + GG    DR ++VG L +  +E Q+R++ E+FGP+    L  D ETG  
Sbjct:   248 NLAQSNST--TVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQC 305

Query:   406 KGYAFCVYQDLSVTDIACAALNG-IKMGDKTLTV 438
             KG+ F  +  L  +  A  ALNG +++  +T+ V
Sbjct:   306 KGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339

 Score = 76 (31.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 30/105 (28%), Positives = 46/105 (43%)

Query:   242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 301
             R  R V+   +P  A E+ V  FFS+      G        +++      K   ++E   
Sbjct:   165 RDQRTVFAYQMPLKATERDVYEFFSKA-----GKVRDVR-LIMDRNSRRSKGVGYIEFYD 218

Query:   302 VEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA----ATLGPSQP 342
             V     A+AL G +F G PV V+ PS+   +LA     T+G + P
Sbjct:   219 VMSVPMAIALSGQLFLGQPVMVK-PSEAEKNLAQSNSTTVGGTGP 262


>UNIPROTKB|Q8HXM1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
            UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
            SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            Uniprot:Q8HXM1
        Length = 572

 Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|K7GS58 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
            Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
        Length = 572

 Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|E2RP40 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
            RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
            KEGG:cfa:492015 Uniprot:E2RP40
        Length = 577

 Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|P33240 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=IDA]
            [GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006369 "termination of RNA polymerase II transcription"
            evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
            GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
            Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
            EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
            PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
            PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
            DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
            PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
            Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
            KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
            HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
            neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
            OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
            GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
            CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
            Uniprot:P33240
        Length = 577

 Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|Q5RDA3 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISS]
            [GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
            ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
            KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
        Length = 577

 Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>MGI|MGI:1343054 [details] [associations]
            symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
            subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
            body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
            EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
            UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
            PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
            PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
            GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
            GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
            Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
            GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
        Length = 580

 Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|E1BVJ6 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
            Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
        Length = 592

 Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|F1MVI1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
            IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
            Uniprot:F1MVI1
        Length = 592

 Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|I3LE23 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
            "mRNA cleavage and polyadenylation specificity factor complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
            KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
            Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
        Length = 592

 Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|E7EWR4 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
            EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
            ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
            UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
            Uniprot:E7EWR4
        Length = 597

 Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>MGI|MGI:1919414 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
            EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
            ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
            PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
            GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
            NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
            GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
        Length = 326

 Score = 162 (62.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 36/97 (37%), Positives = 54/97 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IFVGGLPY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   +N  A Q   + + V    Q++
Sbjct:    98 NGIKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEK 134


>UNIPROTKB|E1C8T0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
            IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
            Uniprot:E1C8T0
        Length = 608

 Score = 167 (63.8 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|F1LMQ9 [details] [associations]
            symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
            OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
            Uniprot:F1LMQ9
        Length = 327

 Score = 162 (62.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 36/97 (37%), Positives = 54/97 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IF+GGLPY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 96

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   AN  A Q   + + V    Q++
Sbjct:    97 NGIKIKGRTIRVDHVANYRAPQESEDVDDVTRELQEK 133


>UNIPROTKB|F1RUJ2 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
            EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
        Length = 254

 Score = 158 (60.7 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 42/116 (36%), Positives = 60/116 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    30 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 89

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ-PGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ   L   ++Q P  +P+  V
Sbjct:    90 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ---LHPALIQRPFGIPAHYV 140


>RGD|1562693 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
            RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
            STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
            NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
        Length = 328

 Score = 162 (62.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 36/97 (37%), Positives = 54/97 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IF+GGLPY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   AN  A Q   + + V    Q++
Sbjct:    98 NGIKIKGRTIRVDHVANYRAPQESEDVDDVTRELQEK 134


>UNIPROTKB|Q9I8B3 [details] [associations]
            symbol:rbm24-b "RNA-binding protein 24-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=ISS]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
            EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
            ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
            CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
        Length = 224

 Score = 154 (59.3 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 40/115 (34%), Positives = 59/115 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ      L+ +P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ--IHPALVQRPYGIPAHYV 122


>UNIPROTKB|G1K177 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
            Uniprot:G1K177
        Length = 644

 Score = 167 (63.8 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 37/89 (41%), Positives = 48/89 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    GP+  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|Q6GQD3 [details] [associations]
            symbol:rbm24-a "RNA-binding protein 24-A" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=IMP]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
            UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
            GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
            HOVERGEN:HBG108399 Uniprot:Q6GQD3
        Length = 225

 Score = 154 (59.3 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 40/115 (34%), Positives = 59/115 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ      L+ +P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ--IHPALIQRPFGIPAHYV 122


>UNIPROTKB|Q6P8A7 [details] [associations]
            symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
            evidence=ISS] [GO:0043488 "regulation of mRNA stability"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
            HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
            RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
            SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
            Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
            Bgee:Q6P8A7 Uniprot:Q6P8A7
        Length = 226

 Score = 154 (59.3 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 40/115 (34%), Positives = 59/115 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ      L+ +P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ--IHPALIQRPFGIPAHYV 122


>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
            symbol:rbm38 "RNA binding motif protein 38"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
            HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
            ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
            InParanoid:Q7T2V9 Uniprot:Q7T2V9
        Length = 246

 Score = 156 (60.0 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 35/85 (41%), Positives = 47/85 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T+A +R+  E+FG +    ++ DR+TG S+GY F    D S  + AC  
Sbjct:    26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 85

Query:   426 LNGIKMGDKTLTVRRANQGANQPKP 450
              N I  G K   V  A  GA    P
Sbjct:    86 PNPIIDGRKA-NVNLAYLGAKPRSP 109


>UNIPROTKB|G3V5Z6 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
            ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
            ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
        Length = 189

 Score = 142 (55.0 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 29/79 (36%), Positives = 42/79 (53%)

Query:   360 GLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             G  GP R++VG L +  TE  +R + E FG +    L+KD +TG SKGY F  + D    
Sbjct:     8 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 67

Query:   420 DIACAALNGIKMGDKTLTV 438
               A   LNG ++  + + V
Sbjct:    68 RRALEQLNGFELAGRPMRV 86


>UNIPROTKB|F1PRG0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
            Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
        Length = 326

 Score = 160 (61.4 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 35/97 (36%), Positives = 54/97 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IF+GGLPY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 96

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   +N  A +   E + V    Q++
Sbjct:    97 NGIKIKGRTIRVDHVSNYRAPKDSEEMDDVTKELQEK 133


>UNIPROTKB|E1BZ17 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
            myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
            mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
            GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
            IPI:IPI00580084 ProteinModelPortal:E1BZ17
            Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
        Length = 245

 Score = 155 (59.6 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 41/116 (35%), Positives = 60/116 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D +  + AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ-PGSVPSKVV 480
              N I  G K   V  A  GA +P+  Q       QQ   L   ++Q P  +P+  V
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRIMQPGFAFGVQQ---LHPALIQRPFGIPAHYV 122


>UNIPROTKB|H9L019 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
            ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
            KEGG:gga:426042 Uniprot:H9L019
        Length = 418

 Score = 111 (44.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 96 (38.9 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     VYVGGL    +E  +   F Q    +  NT  P D V      H+
Sbjct:     5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>UNIPROTKB|J9P250 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
            ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
        Length = 341

 Score = 160 (61.4 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 35/97 (36%), Positives = 54/97 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IF+GGLPY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   +N  A +   E + V    Q++
Sbjct:    98 NGIKIKGRTIRVDHVSNYRAPKDSEEMDDVTKELQEK 134


>TAIR|locus:1005716652 [details] [associations]
            symbol:AT2G33435 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00541152
            RefSeq:NP_850209.1 UniGene:At.37925 ProteinModelPortal:F4IVU7
            SMR:F4IVU7 PRIDE:F4IVU7 EnsemblPlants:AT2G33435.1 GeneID:817908
            KEGG:ath:AT2G33435 OMA:KEDHVGA Uniprot:F4IVU7
        Length = 979

 Score = 167 (63.8 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 34/91 (37%), Positives = 55/91 (60%)

Query:   239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 298
             ++TR  RR+Y   +P +A+E+S+   F+  M + G N     +  ++  IN EK  A VE
Sbjct:   872 ESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVE 931

Query:   299 MRSVEEASNAMALDGIIFEGAPVKVRRPSDY 329
               + ++AS A++LDG  F G+ +K+RRP DY
Sbjct:   932 FLTPQDASAALSLDGCSFAGSNLKIRRPKDY 962


>UNIPROTKB|F1MWR2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
            UniGene:Bt.3914 ProteinModelPortal:F1MWR2
            Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
            NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
        Length = 424

 Score = 111 (44.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 96 (38.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     VYVGGL    +E  +   F Q    +  NT  P D V      H+
Sbjct:     5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>UNIPROTKB|E2R5T2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
            ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
            KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
        Length = 424

 Score = 111 (44.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 96 (38.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     VYVGGL    +E  +   F Q    +  NT  P D V      H+
Sbjct:     5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>UNIPROTKB|Q15427 [details] [associations]
            symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
            HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
            EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
            EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
            UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
            ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
            MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
            PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
            Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
            KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
            HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
            neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
            OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
            GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
            CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
            Uniprot:Q15427
        Length = 424

 Score = 111 (44.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 96 (38.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     VYVGGL    +E  +   F Q    +  NT  P D V      H+
Sbjct:     5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>UNIPROTKB|F1SDG0 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
            ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
            GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
        Length = 424

 Score = 111 (44.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 96 (38.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     VYVGGL    +E  +   F Q    +  NT  P D V      H+
Sbjct:     5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>MGI|MGI:109580 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
            OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
            EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
            UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
            IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
            PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
            KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
            NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
        Length = 424

 Score = 111 (44.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 96 (38.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     VYVGGL    +E  +   F Q    +  NT  P D V      H+
Sbjct:     5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>RGD|1309667 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
            OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
            RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
            SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
            GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
            NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
        Length = 424

 Score = 111 (44.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 96 (38.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     VYVGGL    +E  +   F Q    +  NT  P D V      H+
Sbjct:     5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>ZFIN|ZDB-GENE-040628-1 [details] [associations]
            symbol:rbm24a "RNA binding motif protein 24a"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003228
            "atrial cardiac muscle tissue development" evidence=IMP]
            [GO:0072358 "cardiovascular system development" evidence=IGI]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
            GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
            ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
            Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
            ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
        Length = 230

 Score = 153 (58.9 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 36/87 (41%), Positives = 49/87 (56%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D S  D AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQ 452
              N I  G K   V  A  GA +P+  Q
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPRVMQ 96


>FB|FBgn0027841 [details] [associations]
            symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
            subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
            cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
            factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
            SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
            InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
            ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
        Length = 437

 Score = 162 (62.1 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 42/139 (30%), Positives = 71/139 (51%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE +++E+    GP+    LV DRE+G  KG+ FC Y+D      A   L
Sbjct:    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVV 486
             NG ++G +TL V   N    + + E + +L   Q +        +P   P  +   T+ V
Sbjct:    78 NGYEIGGRTLRVD--NACTEKSRMEMQQLLQGPQVENPYGE-PCEPEDAPELI---TKTV 131

Query:   487 SADELKDDEEYEEILEDMR 505
             ++  L  ++ YE +++ M+
Sbjct:   132 AS--LPPEQMYE-LMKQMK 147


>UNIPROTKB|Q9Y388 [details] [associations]
            symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
            EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
            ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
            PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
            Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
            CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
            neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
            InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
            NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
            Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
        Length = 322

 Score = 157 (60.3 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 35/97 (36%), Positives = 54/97 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IF+GGLPY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   +N  A +   E + V    Q++
Sbjct:    98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEK 134


>POMBASE|SPBC3B9.11c [details] [associations]
            symbol:ctf1 "mRNA cleavage and polyadenylation
            specificity factor complex subunit Ctf1" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
            specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
            GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
            GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
            eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
            ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
            GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
            NextBio:20802132 Uniprot:O43040
        Length = 363

 Score = 158 (60.7 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  +E Q+ E+    GP++ F LV D ETG+ KGY FC + D   T +A   L
Sbjct:     9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQ 452
             N  ++G + +   R    +N P+  Q
Sbjct:    69 NNSELGPRKI---RVEFPSNDPRRNQ 91


>UNIPROTKB|E2R1C1 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
            Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
        Length = 435

 Score = 159 (61.0 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    G +  F LV DRETG  KGY FC YQD      A   L
Sbjct:    22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    82 NGREFSGRALRVDNAASEKN--KEELKSL 108


>UNIPROTKB|G5E5I0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
            Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
        Length = 338

 Score = 156 (60.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/97 (35%), Positives = 53/97 (54%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IF+GGLPY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   +N    +   E + V    Q++
Sbjct:    98 NGIKIKGRTIRVDHVSNYRLPEDSEEMDEVTRELQER 134


>ZFIN|ZDB-GENE-031118-2 [details] [associations]
            symbol:cstf2 "cleavage stimulation factor, 3'
            pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
            UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
            STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
            InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
            Uniprot:Q6P0U7
        Length = 488

 Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 41/112 (36%), Positives = 55/112 (49%)

Query:   345 NLNLAAVGLTPGSAGGLEGPDR-IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 403
             NL +AA          ++   R +FVG +PY  TE Q++++    G +  F LV DRETG
Sbjct:     3 NLAVAAAAAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETG 62

Query:   404 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV 455
               KGY FC YQD      A   LNG +   + L V  A    N  K E +S+
Sbjct:    63 KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN--KEELKSL 112


>ZFIN|ZDB-GENE-020419-22 [details] [associations]
            symbol:sf3b4 "splicing factor 3b, subunit 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
            IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
            SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
            Uniprot:Q8JGT1
        Length = 400

 Score = 111 (44.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:   102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   162 MNGQYLCNRPITVSYA 177

 Score = 91 (37.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:   247 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEAS 306
             VYVGGL    +E  +   F Q    +  NT  P D V      H+  + FVE  S E+A 
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQG-YGFVEFLSEEDAD 68

Query:   307 NAMALDGII-FEGAPVKVRRPSDYNPSL 333
              A+ +  +I   G P++V + S +N +L
Sbjct:    69 YAIKIMNMIKLYGKPIRVNKASAHNKNL 96


>UNIPROTKB|J9P8Y3 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
            EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
        Length = 558

 Score = 159 (61.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    G +  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|F1SD01 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
            RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
            Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
            Uniprot:F1SD01
        Length = 615

 Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    G +  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|Q9H0L4 [details] [associations]
            symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
            variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
            EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
            RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
            SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
            PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
            PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
            Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
            CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
            MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
            InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
            NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
            GermOnline:ENSG00000177613 Uniprot:Q9H0L4
        Length = 616

 Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    G +  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>RGD|1310026 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
            2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
            ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
            Uniprot:B5DFH8
        Length = 629

 Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    G +  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|G3MZ78 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
            EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
        Length = 632

 Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    G +  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>MGI|MGI:1932622 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
            subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
            OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
            EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
            RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
            SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
            REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
            Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
            UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
            Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
        Length = 632

 Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q++++    G +  F LV DRETG  KGY FC YQD      A   L
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NG +   + L V  A    N  K E +S+
Sbjct:    78 NGREFSGRALRVDNAASEKN--KEELKSL 104


>UNIPROTKB|G3XAP0 [details] [associations]
            symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
            HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
            ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
            ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
        Length = 269

 Score = 145 (56.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 35/99 (35%), Positives = 49/99 (49%)

Query:   340 SQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 399
             SQ   N  LAA+        G  GP R++VG L +  TE  +R + E FG +    L+KD
Sbjct:    71 SQAEKN-RLAAMANNLQKGNG--GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 127

Query:   400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
              +TG SKGY F  + D      A   LNG ++  + + V
Sbjct:   128 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 166

 Score = 43 (20.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query:   292 KKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 335
             K  A+VE   ++    A+ L G    G P+ V+        LAA
Sbjct:    37 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 80


>FB|FBgn0010258 [details] [associations]
            symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
            melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=ISS] [GO:0003729 "mRNA binding"
            evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
            GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
            ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
            FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
            OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
        Length = 428

 Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 64/220 (29%), Positives = 97/220 (44%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVV--NVYINHEK 292
             A+ ++   H R++++GGL      +++  FFSQ      G  A   DAVV  +   NH +
Sbjct:    22 AIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQF-----GIVA---DAVVLRDPVSNHSR 73

Query:   293 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA-V 351
              F FV    V+  S  +           V+  RP   +  +  T   + P  +      V
Sbjct:    74 GFGFVTY--VDPKSVEI-----------VQRARPHTIDNKIVETKH-ALPRQDFKRGGGV 119

Query:   352 GLTPGSAG---GLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY 408
             G   GS G   G     RIF+GGL  Y  E  +RE    FGP+    L+ DRETG  + +
Sbjct:   120 GSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAF 179

Query:   409 AFCVYQDLSVTDIACAALNGIKMGDKTLT-VRRANQGANQ 447
              F  + D S  + A A      +  +TL  V+R+ Q A++
Sbjct:   180 GFLEFVDPSSAEKALAPRKHWIL--QTLVEVKRSTQKADR 217


>ZFIN|ZDB-GENE-060312-43 [details] [associations]
            symbol:rbm24b "RNA binding motif protein 24b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
            looping" evidence=IMP] [GO:0072358 "cardiovascular system
            development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
            tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
            muscle tissue development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
            GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
            IPI:IPI00898048 ProteinModelPortal:E9QCG4
            Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
        Length = 245

 Score = 148 (57.2 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 34/84 (40%), Positives = 48/84 (57%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ T++ +R+  E FG +    ++ DR+TG S+GY F    D S  + AC  
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKD 71

Query:   426 LNGIKMGDKTLTVRRANQGANQPK 449
              N I  G K   V  A  GA +P+
Sbjct:    72 PNPIIDGRKA-NVNLAYLGA-KPR 93


>UNIPROTKB|G3X6K3 [details] [associations]
            symbol:LOC534630 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
            GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
            RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
            GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
        Length = 330

 Score = 151 (58.2 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 34/97 (35%), Positives = 52/97 (53%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             IF+GGLPY  TE  I  +   +G +   +LV D++TG SKG+ F  Y+D   T +A    
Sbjct:    38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
             NGIK+  +T+ V   +N    +   E + V    Q++
Sbjct:    98 NGIKIKGRTIRVDHVSNYRLPEDSEEMDEVTRELQER 134


>DICTYBASE|DDB_G0285403 [details] [associations]
            symbol:DDB_G0285403 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
            EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
            EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
            InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
        Length = 1035

 Score = 124 (48.7 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
 Identities = 30/117 (25%), Positives = 55/117 (47%)

Query:   339 PSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             P  P PN +   V +   S        RI++G + +  TE Q+R +   FG +    L++
Sbjct:   751 PDVPKPNESAPPVPINEAS--------RIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQ 802

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV 455
             + +TG  KG+ F  ++     D A A +NG ++  +++ V R  + +N       S+
Sbjct:   803 NADTGKHKGFGFVDFELKKSADDAIATMNGFELLGRSIKVGRPTKSSNNNNNNNNSI 859

 Score = 123 (48.4 bits), Expect = 0.00034, P = 0.00034
 Identities = 35/109 (32%), Positives = 49/109 (44%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             RI+VG L +  TE  IR     FG ++   L KD  +G SKGYAF  Y +      A  +
Sbjct:   589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKALQS 647

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ--RLMLQP 472
             +    M  + + V R   G    + +Q+      QQQI L      +QP
Sbjct:   648 MTNYVMCGRAIKVARPFTGTGSHQQQQQQQQQQQQQQILLSPNHQQIQP 696

 Score = 77 (32.2 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
 Identities = 28/99 (28%), Positives = 44/99 (44%)

Query:   229 PVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI 288
             P+ P   + Q  ++   R+YVG L  +  E  +   FS V   I     G  DA      
Sbjct:   574 PIPPT--LNQSTSQDQSRIYVGSLHFSLTEDVIRATFS-VFGNIKSLALGK-DAS----- 624

Query:   289 NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRP 326
                K +AF+E  + E A+ A+ ++   +  G  +KV RP
Sbjct:   625 GKSKGYAFIEYDNQESAAKALQSMTNYVMCGRAIKVARP 663

 Score = 46 (21.3 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query:   457 LHAQQQIAL-QRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGK 510
             L ++Q+I L Q+L+    + PS+ + L    S D++  D  +E+ +     E G+
Sbjct:   925 LTSEQRIQLTQKLLGSDTTQPSRCLVLKNAGSPDDI--DSSFEDDIRSGCNEFGE 977


>ZFIN|ZDB-GENE-050626-88 [details] [associations]
            symbol:rbmx2 "RNA binding motif protein, X-linked 2"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
            IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
            Uniprot:F1RAH8
        Length = 450

 Score = 153 (58.9 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 39/144 (27%), Positives = 70/144 (48%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +F+GG PY  TE  I  +   +G +   +LV+D++TG SKG+ F  Y+D   T +A    
Sbjct:    38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVV 486
             NGIK+  +T+   R +  AN   P+    +    +Q+  +    +P S   +       V
Sbjct:    98 NGIKIKGRTI---RVDHVANYRPPKDTDDIDDITKQLREEGCAPKPVSSSEEESAEEYAV 154

Query:   487 SADELKDDEEYEEILEDMRQEGGK 510
                + K D++ ++  +  ++E  K
Sbjct:   155 PVKKPKKDKKEKKKKKKEKKEKKK 178


>UNIPROTKB|Q8EK89 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 131 (51.2 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 29/80 (36%), Positives = 41/80 (51%)

Query:   363 GPDR-IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 421
             GP   ++VG LPY   E +++ L   FGP+    LV+DR+TG  KG+ F    +      
Sbjct:    61 GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQK- 119

Query:   422 ACAALNGIKMGDKTLTVRRA 441
             A   LN     ++TL VR A
Sbjct:   120 AMVKLNDFNFQERTLKVREA 139


>TIGR_CMR|SO_0208 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 131 (51.2 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 29/80 (36%), Positives = 41/80 (51%)

Query:   363 GPDR-IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 421
             GP   ++VG LPY   E +++ L   FGP+    LV+DR+TG  KG+ F    +      
Sbjct:    61 GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQK- 119

Query:   422 ACAALNGIKMGDKTLTVRRA 441
             A   LN     ++TL VR A
Sbjct:   120 AMVKLNDFNFQERTLKVREA 139


>UNIPROTKB|E2QVA8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
            Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
        Length = 440

 Score = 147 (56.8 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
 Identities = 34/101 (33%), Positives = 50/101 (49%)

Query:   360 GLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             G  GP R++VG L +  TE  +R + E FG +    L+KD +TG SKGY F  + D    
Sbjct:   259 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 318

Query:   420 DIACAALNGIKMGDKTLTV----RRANQGANQPKPEQESVL 456
               A   LNG ++  + + V     R + G +   P+ E  L
Sbjct:   319 RRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGEQEL 359

 Score = 46 (21.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
 Identities = 26/108 (24%), Positives = 42/108 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  ++ +  R AR V+   L      + +  FFS    A+G         + +  
Sbjct:   151 PVREPIDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFS----AVG--KVRDVRIISDRN 203

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 335
                 K  A+VE   ++    A+ L G    G P+ V+        LAA
Sbjct:   204 SRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 251


>TAIR|locus:2013016 [details] [associations]
            symbol:CSTF64 "cleavage stimulating factor 64"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
            processing" evidence=IMP] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IMP] [GO:0048589
            "developmental growth" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
            IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
            SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
            GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
            OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
            Uniprot:Q9M9G6
        Length = 461

 Score = 153 (58.9 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
 Identities = 34/88 (38%), Positives = 44/88 (50%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG +PY  TE Q+RE+    GP+  F LV DRETG  KGY FC Y+D      A   L
Sbjct:    11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQES 454
                ++  + L V  A       K   +S
Sbjct:    71 QSYEINGRQLRVDFAENDKGTDKTRDQS 98

 Score = 40 (19.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query:   450 PEQESVLLHAQQQIALQRLMLQP 472
             PEQ+  +L  QQ +  Q  M+QP
Sbjct:   439 PEQQQEVLKLQQALK-QDHMMQP 460


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 148 (57.2 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>TAIR|locus:2046298 [details] [associations]
            symbol:emb2444 "embryo defective 2444" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
            KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
            RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
            SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
            GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
            OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
            Genevestigator:Q9ZU66 Uniprot:Q9ZU66
        Length = 363

 Score = 100 (40.3 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
 Identities = 30/88 (34%), Positives = 44/88 (50%)

Query:   247 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEAS 306
             VYVGGL    +E+ +   F Q    +  N   P D V N++ N    + F+E RS E+A 
Sbjct:    27 VYVGGLDAQLSEELLWELFVQAGPVV--NVYVPKDRVTNLHQN----YGFIEYRSEEDAD 80

Query:   307 NAM-ALDGIIFEGAPVKVRRPSDYNPSL 333
              A+  L+ I   G P++V + S    SL
Sbjct:    81 YAIKVLNMIKLHGKPIRVNKASQDKKSL 108

 Score = 95 (38.5 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
 Identities = 20/76 (26%), Positives = 39/76 (51%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFD-LVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +F+G L     E  + +   +FG +     +++D +TGNS+G+ F  Y     +D A  +
Sbjct:   114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173

Query:   426 LNGIKMGDKTLTVRRA 441
             + G  + ++ +TV  A
Sbjct:   174 MTGQYLSNRQITVSYA 189


>UNIPROTKB|Q48A10 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
            STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 130 (50.8 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 35/112 (31%), Positives = 54/112 (48%)

Query:   333 LAATLGPSQP-NPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             ++A L P    +P+ N A+   +  +    E    ++VG LPY   E  +REL    G +
Sbjct:    39 VSAFLAPLLTGSPSTNTAS-STSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSV 97

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443
                 L+KD+ TG  +G+ F V       D A +ALN  +   +TL VR A +
Sbjct:    98 HSVRLMKDKHTGKRRGFGF-VEMASDDLDKAISALNDTEFQQRTLKVREAKE 148


>TIGR_CMR|CPS_0338 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
            RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
            GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 130 (50.8 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 35/112 (31%), Positives = 54/112 (48%)

Query:   333 LAATLGPSQP-NPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             ++A L P    +P+ N A+   +  +    E    ++VG LPY   E  +REL    G +
Sbjct:    39 VSAFLAPLLTGSPSTNTAS-STSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSV 97

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443
                 L+KD+ TG  +G+ F V       D A +ALN  +   +TL VR A +
Sbjct:    98 HSVRLMKDKHTGKRRGFGF-VEMASDDLDKAISALNDTEFQQRTLKVREAKE 148


>UNIPROTKB|H0YJJ3 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
            Uniprot:H0YJJ3
        Length = 214

 Score = 142 (55.0 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 29/79 (36%), Positives = 42/79 (53%)

Query:   360 GLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             G  GP R++VG L +  TE  +R + E FG +    L+KD +TG SKGY F  + D    
Sbjct:    33 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 92

Query:   420 DIACAALNGIKMGDKTLTV 438
               A   LNG ++  + + V
Sbjct:    93 RRALEQLNGFELAGRPMRV 111


>UNIPROTKB|F1MY46 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
            TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
            UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
        Length = 463

 Score = 146 (56.5 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
 Identities = 36/99 (36%), Positives = 49/99 (49%)

Query:   340 SQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 399
             SQ   N  LAA+        G  GP R++VG L    TE  +R +LE FG +    L+KD
Sbjct:   256 SQAEKN-RLAAMANNLQKGSG--GPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKD 312

Query:   400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
              ETG SKGY F  + D      A   LNG ++  + + +
Sbjct:   313 SETGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRI 351

 Score = 47 (21.6 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
 Identities = 27/108 (25%), Positives = 42/108 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  PV  ++ +  R AR V+   L      + +  FFS    A+G         + +  
Sbjct:   165 PVREPVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFS----AVG--KVRDVRIISDRN 217

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 335
                 K  A+VE   ++    A+ L G    G P+ V+        LAA
Sbjct:   218 SRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 265


>UNIPROTKB|G4MTM5 [details] [associations]
            symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
            phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
            KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
            EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
            Uniprot:G4MTM5
        Length = 378

 Score = 150 (57.9 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 30/82 (36%), Positives = 47/82 (57%)

Query:   358 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 417
             AG  +GP  I++G +PY F E +IR+ L  FG +    L ++++TG SKGYAF  +QD S
Sbjct:   161 AGSSDGPRVIYIGHIPYGFFEHEIRQYLSQFGTITNLRLSRNKKTGASKGYAFVEFQDAS 220

Query:   418 VTDIACAALNGIKMGDKTLTVR 439
                I    ++   +  + L V+
Sbjct:   221 TAAIVAKTMDAYLLFGRILKVK 242


>UNIPROTKB|Q86U06 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
            EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
            EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
            IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
            RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
            UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
            ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
            MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
            PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
            Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
            KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
            UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
            HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
            HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
            ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
            NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
            Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
            Uniprot:Q86U06
        Length = 439

 Score = 145 (56.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
 Identities = 35/99 (35%), Positives = 49/99 (49%)

Query:   340 SQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 399
             SQ   N  LAA+        G  GP R++VG L +  TE  +R + E FG +    L+KD
Sbjct:   241 SQAEKN-RLAAMANNLQKGNG--GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 297

Query:   400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
              +TG SKGY F  + D      A   LNG ++  + + V
Sbjct:   298 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336

 Score = 47 (21.6 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
 Identities = 27/108 (25%), Positives = 42/108 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  PV  ++ +  R AR V+   L      + +  FFS    A+G         + +  
Sbjct:   150 PVREPVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFS----AVG--KVRDVRIISDRN 202

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 335
                 K  A+VE   ++    A+ L G    G P+ V+        LAA
Sbjct:   203 SRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 250


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 153 (58.9 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 46/153 (30%), Positives = 67/153 (43%)

Query:   289 NHEKKF---AFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPN 345
             N  K+F   A++E    E  + A+ L G    G P+ V+               ++ N  
Sbjct:   272 NKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQ------------AEKN-R 318

Query:   346 LNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNS 405
             L  AA    P S     GP R++VG L +  TE  +R + E FG +    L+ D ETG S
Sbjct:   319 LQNAAPAFQPKSH---TGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRS 375

Query:   406 KGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             KGY F  Y +      A   LNG ++  + + V
Sbjct:   376 KGYGFITYHNADDAKKALEQLNGFELAGRLMKV 408


>UNIPROTKB|I3LK87 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
            Uniprot:I3LK87
        Length = 312

 Score = 148 (57.2 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 35/100 (35%), Positives = 54/100 (54%)

Query:   367 IFVGGLPYYFTEAQIR---ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423
             IF+GGLPY  TE  I      +  +G +   +LV+D++TG SKG+ F  Y+D   T +A 
Sbjct:    38 IFLGGLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 97

Query:   424 AALNGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQ 462
                NGIK+  +T+ V   +N  A +   E + V    Q++
Sbjct:    98 DNFNGIKIKGRTIRVDHVSNYRAPKDSEETDDVTKELQER 137


>UNIPROTKB|H0YEM1 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
            InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
            Ensembl:ENST00000527744 Uniprot:H0YEM1
        Length = 336

 Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   128 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 187

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   188 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 215

 Score = 106 (42.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   224 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 283

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   284 SMNLFDLGGQYLRVGKA 300

 Score = 86 (35.3 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:   101 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 154

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   155 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 205


>ZFIN|ZDB-GENE-050327-97 [details] [associations]
            symbol:rbm39b "RNA binding motif protein 39b"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
            GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
            EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
            UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
            GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
            OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
        Length = 539

 Score = 152 (58.6 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 34/92 (36%), Positives = 47/92 (51%)

Query:   347 NLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSK 406
             N AA   +    GG  GP R++VG L +  TE  +R + E FG + G  L+ D ETG SK
Sbjct:   247 NRAAAMASMLQRGGA-GPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSK 305

Query:   407 GYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             GY F  + D      A   LNG ++  + + V
Sbjct:   306 GYGFISFADAECAKKALEQLNGFELAGRPMKV 337


>UNIPROTKB|Q9KVI6 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 129 (50.5 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 32/87 (36%), Positives = 46/87 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             ++VG LPY   E+ ++EL   FG +    L+KD+ TG  +G+ F V    S    A  AL
Sbjct:    66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIA-ASQAQTAIDAL 124

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQE 453
             N  +   +TL VR AN     PK ++E
Sbjct:   125 NEKEYMQRTLKVRIAND----PKSDEE 147


>TIGR_CMR|VC_0159 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 129 (50.5 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 32/87 (36%), Positives = 46/87 (52%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             ++VG LPY   E+ ++EL   FG +    L+KD+ TG  +G+ F V    S    A  AL
Sbjct:    66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIA-ASQAQTAIDAL 124

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQE 453
             N  +   +TL VR AN     PK ++E
Sbjct:   125 NEKEYMQRTLKVRIAND----PKSDEE 147


>UNIPROTKB|F1NA97 [details] [associations]
            symbol:LOC426301 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
            EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
            EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
            IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
            Uniprot:F1NA97
        Length = 366

 Score = 128 (50.1 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:    87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   147 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 174

 Score = 106 (42.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   183 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 242

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   243 SMNLFDLGGQYLRVGKA 259

 Score = 86 (35.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:    60 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 113

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   114 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 164


>UNIPROTKB|I3LPP8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
            GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
            Uniprot:I3LPP8
        Length = 423

 Score = 143 (55.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 28/79 (35%), Positives = 42/79 (53%)

Query:   360 GLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             G  GP R++VG L +  TE  +R + E FG +    L+KD +TG SKGY F  + D    
Sbjct:   249 GTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 308

Query:   420 DIACAALNGIKMGDKTLTV 438
               A   LNG ++  + + +
Sbjct:   309 RRALEQLNGFELAGRPMRI 327

 Score = 47 (21.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 27/108 (25%), Positives = 42/108 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  PV  ++ +  R AR V+   L      + +  FFS    A+G         + +  
Sbjct:   141 PVREPVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFS----AVG--KVRDVRIISDRN 193

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 335
                 K  A+VE   ++    A+ L G    G P+ V+        LAA
Sbjct:   194 SRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 241


>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
            symbol:puf60a "poly-U binding splicing factor a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
            ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
            TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
            Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
            Uniprot:F1QZ57
        Length = 538

 Score = 127 (49.8 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:    94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   154 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 181

 Score = 101 (40.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y        A +
Sbjct:   190 NRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVS 249

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   250 SMNLFDLGGQYLRVGKA 266

 Score = 82 (33.9 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query:   215 PNMFPL--VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVM 269
             PN   +  +T  FG  P+ P+Q++  Q  R      RVYVG +     E ++   F+   
Sbjct:    59 PNSLQMASLTMGFGD-PLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF- 116

Query:   270 AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 G       +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   117 ----GPIKSIDMSWDSVTLKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 171

 Score = 52 (23.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 20/74 (27%), Positives = 37/74 (50%)

Query:   451 EQE--SVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEG 508
             EQE  S+   + + + +Q+L+ +  S    V+ L  +V  +++ DD E E     + +E 
Sbjct:   415 EQEHMSISGSSARHMVMQKLLRKQEST---VMVLRNMVGPEDIDDDLEGE-----VTEEC 466

Query:   509 GKFAFCSPTFCYKE 522
             GKF   +    Y+E
Sbjct:   467 GKFGAVNRVIIYQE 480


>RGD|1310071 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10116
            "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
            "centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
            KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
            KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
            RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
            GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
            NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
        Length = 524

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>UNIPROTKB|F6QIA5 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
            Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
        Length = 525

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>UNIPROTKB|F2Z5I2 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:CU210870
            Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
        Length = 525

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>UNIPROTKB|E1BRU3 [details] [associations]
            symbol:LOC100858247 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
            IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
        Length = 529

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>UNIPROTKB|E2R4L0 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
            EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
            SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
            KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
        Length = 530

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>UNIPROTKB|Q14498 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
            "centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
            EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
            PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
            RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
            PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
            MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
            PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
            Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
            KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
            GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
            neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
            InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
            GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
            CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
            Uniprot:Q14498
        Length = 530

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>MGI|MGI:2157953 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
            DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
            GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
            EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
            HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
            EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
            IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
            UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
            PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
            STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
            Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
            Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
            GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
            EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
            CleanEx:MM_RBM39 Genevestigator:Q8VH51
            GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
        Length = 530

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>UNIPROTKB|F1MA64 [details] [associations]
            symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
            IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
            SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
            KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
        Length = 530

 Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   228 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 283

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323

 Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%)

Query:   229 PVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY 287
             PV  P+  +T +  R AR V+   L      + +  FFS V     G        + +  
Sbjct:   137 PVREPIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV-----GKVRDVR-MISDRN 189

Query:   288 INHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
                 K  A+VE   V     A+ L G    G P+ V+
Sbjct:   190 SRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 226


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + +   SFGP+    +VKDRET  S+G+ F  + +     +A  A
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66

Query:   426 LNGIKMGDKTLTVRRANQGA 445
             +NG  +  + + V  A + A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|J9P4I7 [details] [associations]
            symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
            TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
            Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
        Length = 560

 Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   191 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 218

 Score = 106 (42.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   227 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 286

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   287 SMNLFDLGGQYLRVGKA 303

 Score = 90 (36.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 35/112 (31%), Positives = 53/112 (47%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P++P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:   104 VTMGFGK-PLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 157

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   158 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 208


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 148 (57.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:    71 SQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 126

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   127 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 166

 Score = 38 (18.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query:   292 KKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 324
             K  A+VE   V     A+ L G    G P+ V+
Sbjct:    37 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ 69


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + +   SFGP+    +VKDRET  S+G+ F  + D      A  A
Sbjct:     7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66

Query:   426 LNGIKMGDKTLTVRRANQGA 445
             +NG  +  + + V  A + A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 112 (44.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             RI+VG LP+     ++  L    G +    +V DRETG S+G+ F    + +  ++A AA
Sbjct:   208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267

Query:   426 LNGIKMGDKTLTVRRANQ 443
             L+G  +  + + V  A +
Sbjct:   268 LDGQNLEGRAIKVNVAEE 285

 Score = 73 (30.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query:   246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEA 305
             +++VG LP   + Q++A  F Q        T    + + N   +  + F FV M +VEEA
Sbjct:   114 KLFVGNLPYDVDSQALAMLFEQA------GTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167

Query:   306 SNAM 309
               A+
Sbjct:   168 EKAV 171


>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
            symbol:rbm39a "RNA binding motif protein 39a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
            KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
            IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
            Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
            KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
        Length = 523

 Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 37/100 (37%), Positives = 49/100 (49%)

Query:   340 SQPNPNLNLA-AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398
             SQ   N   A A  L  GSAG    P R++VG L +  TE  +R + E FG +    L+ 
Sbjct:   224 SQAEKNRAAALANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMM 279

Query:   399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             D ETG SKGY F  + D      A   LNG ++  + + V
Sbjct:   280 DSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKV 319


>UNIPROTKB|F1P1V2 [details] [associations]
            symbol:LOC426301 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
            "cyclin-dependent protein kinase activating kinase holoenzyme
            complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
            TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
            EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
            EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
            ArrayExpress:F1P1V2 Uniprot:F1P1V2
        Length = 522

 Score = 128 (50.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:    93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   153 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 180

 Score = 106 (42.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   189 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 248

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   249 SMNLFDLGGQYLRVGKA 265

 Score = 86 (35.3 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:    66 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 119

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   120 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 170


>UNIPROTKB|F1N238 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
            kinase activating kinase holoenzyme complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
            InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
            UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
            Ensembl:ENSBTAT00000002882 Uniprot:F1N238
        Length = 530

 Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   161 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 188

 Score = 106 (42.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   197 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 256

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   257 SMNLFDLGGQYLRVGKA 273

 Score = 86 (35.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:    74 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 127

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   128 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 178


>UNIPROTKB|Q2HJG2 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
            OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
            EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
            UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
            PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
            InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
        Length = 530

 Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   161 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 188

 Score = 106 (42.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   197 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 256

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   257 SMNLFDLGGQYLRVGKA 273

 Score = 86 (35.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:    74 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 127

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   128 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 178


>UNIPROTKB|Q9UHX1 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0019907
            "cyclin-dependent protein kinase activating kinase holoenzyme
            complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
            EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
            HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
            KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
            EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
            EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
            IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
            RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
            RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
            RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
            PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
            PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
            PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
            IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
            DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
            Ensembl:ENST00000349157 Ensembl:ENST00000453551
            Ensembl:ENST00000456095 Ensembl:ENST00000526683
            Ensembl:ENST00000527197 Ensembl:ENST00000563311
            Ensembl:ENST00000563654 Ensembl:ENST00000566765
            Ensembl:ENST00000567937 Ensembl:ENST00000568960
            Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
            UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
            HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
            PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
            EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
            ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
            Genevestigator:Q9UHX1 Uniprot:Q9UHX1
        Length = 559

 Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   190 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 217

 Score = 106 (42.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   226 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 285

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   286 SMNLFDLGGQYLRVGKA 302

 Score = 86 (35.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:   103 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 156

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   157 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 207


>MGI|MGI:1915209 [details] [associations]
            symbol:Puf60 "poly-U binding splicing factor 60"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
            eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
            HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
            InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
            OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
            IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
            RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
            UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
            STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
            Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
            KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
            InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
            Genevestigator:Q3UEB3 Uniprot:Q3UEB3
        Length = 564

 Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   195 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 222

 Score = 106 (42.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   291 SMNLFDLGGQYLRVGKA 307

 Score = 86 (35.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:   108 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 161

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   162 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 212


>RGD|621674 [details] [associations]
            symbol:Puf60 "poly-U binding splicing factor 60" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0019907 "cyclin-dependent protein kinase activating kinase
            holoenzyme complex" evidence=IEA;ISO] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
            GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
            GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
            HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
            TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
            EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
            ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
            Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
            UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
            Genevestigator:Q9WV25 Uniprot:Q9WV25
        Length = 564

 Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   195 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 222

 Score = 106 (42.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   291 SMNLFDLGGQYLRVGKA 307

 Score = 86 (35.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:   221 VTGQFGALPVMPVQAMTQQATRHAR---RVYVGGLPPTANEQSVATFFSQVMAAIGGNTA 277
             VT  FG  P+ P+Q+M  Q  R      RVYVG +     E ++   F+       G   
Sbjct:   108 VTMGFGD-PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIK 161

Query:   278 GPGDAVVNVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
                 +  +V + H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   162 SIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 212


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 141 (54.7 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 48/206 (23%), Positives = 83/206 (40%)

Query:   246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEA 305
             +++VG LP   +   +A  F        GN     + + +      + F FV M SV E 
Sbjct:    92 KLFVGNLPFNVDSAQLAQLFESA-----GNVEMV-EVIYDKITGRSRGFGFVTMSSVSEV 145

Query:   306 -SNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQ-PNPNLNLAAVGLTPGSAGGLEG 363
              + A   +G   +G P++V       P      G S+ P  +   +  G   G   G   
Sbjct:   146 EAAAQQFNGYELDGRPLRVNAGP---PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS 202

Query:   364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423
              +R++VG L +   +  +  L    G +    ++ DR++G SKG+ F  Y        A 
Sbjct:   203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262

Query:   424 AALNGIKMGDKTLTVRRANQGANQPK 449
              +L+G  +  + + V  A   A  P+
Sbjct:   263 KSLDGADLDGRQIRVSEAE--ARPPR 286

 Score = 130 (50.8 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 28/86 (32%), Positives = 45/86 (52%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVG LP+    AQ+ +L ES G +   +++ D+ TG S+G+ F     +S  + A   
Sbjct:    92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPE 451
              NG ++  + L   R N G   PK E
Sbjct:   152 FNGYELDGRPL---RVNAGPPPPKRE 174


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 122 (48.0 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 28/82 (34%), Positives = 42/82 (51%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             ++I+VG L Y  T  +++     +G +    L+ DRETG SKG+AF  Y        A +
Sbjct:    18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77

Query:   425 ALNGIKM-GDKT-LTVRRANQG 444
               NGI + G K  + + R N G
Sbjct:    78 KANGIDLQGRKIRVNIARENTG 99


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 122 (48.0 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 28/82 (34%), Positives = 42/82 (51%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             ++I+VG L Y  T  +++     +G +    L+ DRETG SKG+AF  Y        A +
Sbjct:    18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77

Query:   425 ALNGIKM-GDKT-LTVRRANQG 444
               NGI + G K  + + R N G
Sbjct:    78 KANGIDLQGRKIRVNIARENTG 99


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 122 (48.0 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 28/106 (26%), Positives = 55/106 (51%)

Query:   347 NLAAVGLTPGSA--GGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 403
             N+++ G  P ++  G L     ++F+GGL +   +A +R+    FG +    ++ DRETG
Sbjct:    14 NISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73

Query:   404 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPK 449
              S+G+ F  + D      A + ++G ++  + + V  AN   + P+
Sbjct:    74 RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPR 119


>UNIPROTKB|Q5SZ64 [details] [associations]
            symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
            HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
            UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
            MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
            Uniprot:Q5SZ64
        Length = 190

 Score = 111 (44.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IF+G L     E  + +   +FG  L+   +++D +TGNSKGYAF  +     +D A  A
Sbjct:    59 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 118

Query:   426 LNGIKMGDKTLTVRRA 441
             +NG  + ++ +TV  A
Sbjct:   119 MNGQYLCNRPITVSYA 134

 Score = 60 (26.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query:   294 FAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
             + FVE  S E+A  A+ +  +I   G P++V + S +N +L
Sbjct:    13 YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 53


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 112 (44.5 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)

Query:   346 LNLAAV-GLTPGSAGGLEGPD-RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 403
             +N AA  G  P  A  +  P  R++VG LP+     ++ +L    G +    +V DRETG
Sbjct:   223 VNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 282

Query:   404 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443
              S+G+ F    D+   + A +AL+G  +  + + V  A +
Sbjct:   283 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322

 Score = 71 (30.1 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query:   246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEA 305
             +++VG L    N Q++A  F Q        T    + + N   +  + F FV M SV+EA
Sbjct:   151 KLFVGNLAYDVNSQALAMLFEQA------GTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204

Query:   306 SNAM 309
               A+
Sbjct:   205 ETAV 208


>SGD|S000003012 [details] [associations]
            symbol:RNA15 "Component of the cleavage and polyadenylation
            factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
            [GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0006379 "mRNA
            cleavage" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0046982 "protein heterodimerization
            activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000003012
            EMBL:BK006941 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            eggNOG:NOG246793 GO:GO:0006378 GO:GO:0006379 GO:GO:0005849
            KO:K14407 InterPro:IPR026896 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OrthoDB:EOG4GQTF6 PDB:2KM8 PDBsum:2KM8
            PDB:2L9B PDBsum:2L9B EMBL:M73462 EMBL:Z72566 PIR:B40257
            RefSeq:NP_011471.1 PDB:2X1A PDB:2X1B PDB:2X1F PDBsum:2X1A
            PDBsum:2X1B PDBsum:2X1F ProteinModelPortal:P25299 SMR:P25299
            DIP:DIP-1489N IntAct:P25299 MINT:MINT-389896 STRING:P25299
            PaxDb:P25299 PeptideAtlas:P25299 EnsemblFungi:YGL044C GeneID:852838
            KEGG:sce:YGL044C CYGD:YGL044c HOGENOM:HOG000247912 OMA:NINMTTP
            EvolutionaryTrace:P25299 NextBio:972414 Genevestigator:P25299
            GermOnline:YGL044C Uniprot:P25299
        Length = 296

 Score = 140 (54.3 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query:   364 PDRI-FVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 422
             P R+ ++G +PY  TE QI +L  + GP+    ++ D +TG SKGYAF  ++DL  +  A
Sbjct:    16 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 75

Query:   423 CAALNGIKMGDKTL 436
                LNG ++G + L
Sbjct:    76 VRNLNGYQLGSRFL 89


>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
            symbol:hnrnpa0a "heterogeneous nuclear
            ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
            EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
            ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
            GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
            NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
        Length = 305

 Score = 109 (43.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 29/107 (27%), Positives = 46/107 (42%)

Query:   343 NPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402
             N  L  A      G    L    +IF+GGL     E  +R+    FG +   +++ D+ET
Sbjct:    79 NVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKET 138

Query:   403 GNSKGYAFCVYQDLSVTDIACAA----LNGIKMGDKTLTVRRANQGA 445
             G  +G+ F  ++D    D A       +NG K+  K    ++  Q A
Sbjct:   139 GKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEMQAA 185

 Score = 73 (30.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 27/92 (29%), Positives = 41/92 (44%)

Query:   236 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVV--NVYINHEKK 293
             MT Q      +++VGGL     +  +   F Q     G  T    D VV  N  +   + 
Sbjct:     1 MTAQMENQLCKLFVGGLNVQTTDDGLRNHFEQY----GKLT----DCVVVQNQQLKRSRC 52

Query:   294 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 325
             F FV   S +EA +AM+    I +G  V+++R
Sbjct:    53 FGFVTYSSPDEADSAMSARPHILDGNNVELKR 84


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + +   SFGP+    +VKDRET  S+G+ F  + +      A  A
Sbjct:     7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   426 LNGIKMGDKTLTVRRANQGA 445
             +NG  +  + + V  A + A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + +   SFGP+    +VKDRET  S+G+ F  + +      A  A
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   426 LNGIKMGDKTLTVRRANQGA 445
             +NG  +  + + V  A + A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + +   SFGP+    +VKDRET  S+G+ F  + +      A  A
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   426 LNGIKMGDKTLTVRRANQGA 445
             +NG  +  + + V  A + A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + +   SFGP+    +VKDRET  S+G+ F  + +      A  A
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   426 LNGIKMGDKTLTVRRANQGA 445
             +NG  +  + + V  A + A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 25/77 (32%), Positives = 40/77 (51%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             ++VG +PY  TE +I     + G +    +V DRETG  +G+AF  + + +    A   L
Sbjct:     8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67

Query:   427 NGIKMGDKTLTVRRANQ 443
             NG+    + L V  AN+
Sbjct:    68 NGVAFNGRNLRVNYANK 84


>WB|WBGene00006321 [details] [associations]
            symbol:sup-12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
            "regulation of actin cytoskeleton organization" evidence=IGI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
            binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
            complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
            GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 137 (53.3 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 35/100 (35%), Positives = 49/100 (49%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ ++  + E  E FG +    ++ DR T  S+GY F   +D +  + AC  
Sbjct:    36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIAL 465
              N I  G K   V  A  GA      Q + L   Q Q+ L
Sbjct:    96 PNPIIDGRKA-NVNLAYLGAKPRTNVQLAALAAGQVQLPL 134


>UNIPROTKB|O45189 [details] [associations]
            symbol:sup-12 "Protein SUP-12, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
            GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 137 (53.3 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 35/100 (35%), Positives = 49/100 (49%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGLPY+ ++  + E  E FG +    ++ DR T  S+GY F   +D +  + AC  
Sbjct:    36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIAL 465
              N I  G K   V  A  GA      Q + L   Q Q+ L
Sbjct:    96 PNPIIDGRKA-NVNLAYLGAKPRTNVQLAALAAGQVQLPL 134


>POMBASE|SPAC644.16 [details] [associations]
            symbol:SPAC644.16 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
            cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
            polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
            GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
            GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
            ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
            KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
        Length = 422

 Score = 142 (55.0 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 27/72 (37%), Positives = 39/72 (54%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             ++VG +PY   E Q+ ++ +  GP++ F LV D E+G  KGY FC Y D +    A   L
Sbjct:     7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66

Query:   427 NGIKMGDKTLTV 438
             N    G + L V
Sbjct:    67 NNYDAGTRRLRV 78


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 140 (54.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
 Identities = 66/268 (24%), Positives = 116/268 (43%)

Query:   240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEM 299
             AT+  R +++  LP +A  +S+A  FSQ  + +  +       VV+      K + FV  
Sbjct:    32 ATQPRRELFIRSLPASATNESLAEHFSQ--SYVIKHAV----VVVDPKTKQSKGYGFVTF 85

Query:   300 RSVEEASNAMA-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 358
               VE+A  A+  L+G  FEG  +KV      +  +  T+G S P+    L          
Sbjct:    86 ADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEA-LERKKQREQQK 144

Query:   359 GGLEGPDRIFVGGLPYYF-TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 417
                + P ++ V  LP+   T   +     SFG ++   L K  +     G+ F V +   
Sbjct:   145 ADTQ-PPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPK--KGSQLAGFGFVVLRGKK 201

Query:   418 VTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQR--LMLQPGSV 475
               + A  A+NG ++  +TL V  A +       ++E    HA+  +  +   + ++ G V
Sbjct:   202 NAEKALEAVNGKEVDGRTLAVDWAVEKEVWENLQKEEE--HAEPDVKEESSDVDMEDGGV 259

Query:   476 PSKVVCLTQVVSADELKDDEEYEEILED 503
                   L + +S D   DDEE +E+ ++
Sbjct:   260 GLDNGELDEDMSED---DDEEDDEVSDE 284

 Score = 48 (22.0 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query:   489 DELKDDEEYEEILEDMRQEGGKFAFCSPTFCYKES 523
             DE +++EE EE  ED R     F    P  C  ES
Sbjct:   290 DEEEEEEEEEEEKEDERNASTIFIRNLPFTCDDES 324


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 127 (49.8 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:    22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:    82 MELDGRRIRVDYSITKRAHTPTP 104


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 127 (49.8 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:    22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:    82 MELDGRRIRVDYSITKRAHTPTP 104


>UNIPROTKB|B1AM48 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
            HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
            Ensembl:ENST00000440102 Uniprot:B1AM48
        Length = 189

 Score = 129 (50.5 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 42/151 (27%), Positives = 67/151 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GP+  N N +      +P  +G  E     + V  LP   T+ +++ L  S G +    L
Sbjct:    17 GPTTINNNCS------SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL 70

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   +     V 
Sbjct:    71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              L     Q  L++L  Q G + +  + + QV
Sbjct:   131 GLPKTMTQKELEQLFSQYGRIITSRILVDQV 161


>UNIPROTKB|F1PVV1 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
            Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
        Length = 367

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 46/150 (30%), Positives = 66/150 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397
             GP+ PN  L L   G T  S   L       V  LP   T+ + + L  S G +    LV
Sbjct:    19 GPALPNGPL-LGTNGATDDSKTNL------IVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71

Query:   398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV-- 455
             +D+ TG S GY F  Y D +  D A   LNG+K+  KT+ V  A   +   +     V  
Sbjct:    72 RDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131

Query:   456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
             L     Q  +++L  Q G + +  + + QV
Sbjct:   132 LPKTMSQKEMEQLFSQYGRIITSRILVDQV 161

 Score = 114 (45.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 34/107 (31%), Positives = 52/107 (48%)

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SL A   P   +    LA VGL+ G+AG   G   IFV  L     E+ + +L   FG +
Sbjct:   254 SLIARFSPIAIDGMSGLAGVGLSGGAAGA--GWC-IFVYNLSPEADESVLWQLFGPFGAV 310

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
                 +++D  T   KG+ F    +     +A A+LNG ++G++ L V
Sbjct:   311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 357

 Score = 51 (23.0 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 267
             A    A+     +YV GLP T +++ +   FSQ
Sbjct:   115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147


>UNIPROTKB|Q14576 [details] [associations]
            symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
            "nervous system development" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
            EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
            RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
            SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
            PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
            Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
            KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
            GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
            neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
            PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
            ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
            Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
        Length = 367

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 46/150 (30%), Positives = 66/150 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397
             GP+ PN  L L   G T  S   L       V  LP   T+ + + L  S G +    LV
Sbjct:    19 GPALPNGPL-LGTNGATDDSKTNL------IVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71

Query:   398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV-- 455
             +D+ TG S GY F  Y D +  D A   LNG+K+  KT+ V  A   +   +     V  
Sbjct:    72 RDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131

Query:   456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
             L     Q  +++L  Q G + +  + + QV
Sbjct:   132 LPKTMSQKEMEQLFSQYGRIITSRILVDQV 161

 Score = 114 (45.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 34/107 (31%), Positives = 52/107 (48%)

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SL A   P   +    LA VGL+ G+AG   G   IFV  L     E+ + +L   FG +
Sbjct:   254 SLIARFSPIAIDGMSGLAGVGLSGGAAGA--GWC-IFVYNLSPEADESVLWQLFGPFGAV 310

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
                 +++D  T   KG+ F    +     +A A+LNG ++G++ L V
Sbjct:   311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 357

 Score = 51 (23.0 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 267
             A    A+     +YV GLP T +++ +   FSQ
Sbjct:   115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147


>UNIPROTKB|F1SA16 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
            Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
        Length = 367

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 46/150 (30%), Positives = 66/150 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397
             GP+ PN  L L   G T  S   L       V  LP   T+ + + L  S G +    LV
Sbjct:    19 GPALPNGPL-LGTNGATDDSKTNL------IVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71

Query:   398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV-- 455
             +D+ TG S GY F  Y D +  D A   LNG+K+  KT+ V  A   +   +     V  
Sbjct:    72 RDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131

Query:   456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
             L     Q  +++L  Q G + +  + + QV
Sbjct:   132 LPKTMSQKEMEQLFSQYGRIITSRILVDQV 161

 Score = 107 (42.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 32/107 (29%), Positives = 48/107 (44%)

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SL A   P   +    LA VG   G  GG      IFV  L     E+ + +L   FG +
Sbjct:   255 SLIARFSPIAIDGMSGLAGVGPVRGCGGGW----CIFVYNLSPEADESVLWQLFGPFGAV 310

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
                 +++D  T   KG+ F    +     +A A+LNG ++G++ L V
Sbjct:   311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 357

 Score = 51 (23.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 267
             A    A+     +YV GLP T +++ +   FSQ
Sbjct:   115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147


>UNIPROTKB|F1N4V6 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
            IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
        Length = 368

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 46/150 (30%), Positives = 66/150 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397
             GP+ PN  L L   G T  S   L       V  LP   T+ + + L  S G +    LV
Sbjct:    19 GPALPNGPL-LGTNGATDDSKTNL------IVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71

Query:   398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV-- 455
             +D+ TG S GY F  Y D +  D A   LNG+K+  KT+ V  A   +   +     V  
Sbjct:    72 RDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131

Query:   456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
             L     Q  +++L  Q G + +  + + QV
Sbjct:   132 LPKTMSQKEMEQLFSQYGRIITSRILVDQV 161

 Score = 114 (45.2 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 34/107 (31%), Positives = 52/107 (48%)

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SL A   P   +    LA VGL+ G+AG   G   IFV  L     E+ + +L   FG +
Sbjct:   255 SLIARFSPIAIDGMSGLAGVGLSGGAAGA--GWC-IFVYNLSPEADESVLWQLFGPFGAV 311

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
                 +++D  T   KG+ F    +     +A A+LNG ++G++ L V
Sbjct:   312 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 358

 Score = 51 (23.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 267
             A    A+     +YV GLP T +++ +   FSQ
Sbjct:   115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147


>WB|WBGene00000774 [details] [associations]
            symbol:cpf-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
            interference" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
            GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
            RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
            DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
            PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
            GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
            WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
            NextBio:893824 Uniprot:O45577
        Length = 336

 Score = 138 (53.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 30/95 (31%), Positives = 43/95 (45%)

Query:   352 GLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFC 411
             G      G       +FVG + Y  +E  IR +    G +    +V DRETG  KGY F 
Sbjct:     5 GYKSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFI 64

Query:   412 VYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446
              + D+   ++A   LNG ++  + L V  A  G N
Sbjct:    65 EFPDIQTAEVAIRNLNGYELSGRILRVDSAAGGMN 99

 Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query:   446 NQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQ 484
             N  + +Q + LL    Q++   L + P     K++ L Q
Sbjct:   291 NHQEEQQNAELLMQVMQLSEHDLQMLPAGDREKIIELRQ 329


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 134 (52.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 29/86 (33%), Positives = 51/86 (59%)

Query:   362 EGPD-RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTD 420
             E P+ R F+GGL +  ++  +R+  E +G L    +V D+ +G S+G+ F  + +    D
Sbjct:     3 EDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMD 62

Query:   421 IACAALNGIKMGDKTLTVRRA--NQG 444
              A AA+NG+ +  +T+TV +A  +QG
Sbjct:    63 EAIAAMNGMDLDGRTITVDKAQPHQG 88


>MGI|MGI:109157 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
            differentiation" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
            ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
            IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
            UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
            PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
            STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
            Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
            UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
            EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
            Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
        Length = 367

 Score = 138 (53.6 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 46/149 (30%), Positives = 65/149 (43%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397
             GP+ PN  L L   G T  S   L       V  LP   T+ + + L  S G +    LV
Sbjct:    19 GPALPNGPL-LGTNGATDDSKTNL------IVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71

Query:   398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV-- 455
             +D+ TG S GY F  Y D +  D A   LNG+K+  KT+ V  A   +   +     V  
Sbjct:    72 RDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131

Query:   456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQ 484
             L     Q  +++L  Q G + +  + L Q
Sbjct:   132 LPKTMSQKEMEQLFSQYGRIITSRILLDQ 160

 Score = 114 (45.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 34/107 (31%), Positives = 52/107 (48%)

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SL A   P   +    LA VGL+ G+AG   G   IFV  L     E+ + +L   FG +
Sbjct:   254 SLIARFSPIAIDGMSGLAGVGLSGGAAGA--GWC-IFVYNLSPEADESVLWQLFGPFGAV 310

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
                 +++D  T   KG+ F    +     +A A+LNG ++G++ L V
Sbjct:   311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 357

 Score = 51 (23.0 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 267
             A    A+     +YV GLP T +++ +   FSQ
Sbjct:   115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147


>RGD|628892 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
            EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
            SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
            KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
            Genevestigator:Q76IJ9 Uniprot:Q76IJ9
        Length = 367

 Score = 138 (53.6 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 46/149 (30%), Positives = 65/149 (43%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397
             GP+ PN  L L   G T  S   L       V  LP   T+ + + L  S G +    LV
Sbjct:    19 GPALPNGPL-LGTNGATDDSKTNL------IVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71

Query:   398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV-- 455
             +D+ TG S GY F  Y D +  D A   LNG+K+  KT+ V  A   +   +     V  
Sbjct:    72 RDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131

Query:   456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQ 484
             L     Q  +++L  Q G + +  + L Q
Sbjct:   132 LPKTMSQKEMEQLFSQYGRIITSRILLDQ 160

 Score = 114 (45.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 34/107 (31%), Positives = 52/107 (48%)

Query:   332 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391
             SL A   P   +    LA VGL+ G+AG   G   IFV  L     E+ + +L   FG +
Sbjct:   254 SLIARFSPIAIDGMSGLAGVGLSGGAAGA--GWC-IFVYNLSPEADESVLWQLFGPFGAV 310

Query:   392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
                 +++D  T   KG+ F    +     +A A+LNG ++G++ L V
Sbjct:   311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 357

 Score = 51 (23.0 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 267
             A    A+     +YV GLP T +++ +   FSQ
Sbjct:   115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147


>WB|WBGene00016245 [details] [associations]
            symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
            GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
            eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
            HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
            RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
            SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
            STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
            KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
            InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
        Length = 302

 Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 26/88 (29%), Positives = 49/88 (55%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             I++GGL Y  +E  +  +   +G +   +L++D++TG SKG+AF  Y+D   T +A    
Sbjct:    40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQES 454
             NGI +  + + V    +    PK ++++
Sbjct:   100 NGISLHKRMIRVDHVEE-YKVPKYKEDA 126


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNGIKMGDKTLTVRRANQGAN 446
             +NG  +  + + V +A + ++
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSD 87


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNGIKMGDKTLTVRRANQGAN 446
             +NG  +  + + V +A + ++
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSD 87


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/83 (33%), Positives = 41/83 (49%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             D+I+VG LPY+  E  + +    FG +    +V++  TG SKGYAF  Y        A  
Sbjct:    44 DQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103

Query:   425 ALNGIKMGDKTLTVRRANQGANQ 447
             A +G  +  ++L VR A     Q
Sbjct:   104 A-HGKDLQGRSLVVRIAKSREQQ 125


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/83 (33%), Positives = 41/83 (49%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             D+I+VG LPY+  E  + +    FG +    +V++  TG SKGYAF  Y        A  
Sbjct:    44 DQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103

Query:   425 ALNGIKMGDKTLTVRRANQGANQ 447
             A +G  +  ++L VR A     Q
Sbjct:   104 A-HGKDLQGRSLVVRIAKSREQQ 125


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + +   SFGP+    +VKDRET  S+G+ F  + +         A
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66

Query:   426 LNGIKMGDKTLTVRRANQGA 445
             +NG  +  + + V  A + A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 126 (49.4 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:    22 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 81

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:    82 MELDGRRIRVDYSITKRAHTPTP 104


>WB|WBGene00004723 [details] [associations]
            symbol:sap-49 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0040022 "feminization of hermaphroditic germ-line"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
            GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
            GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
            ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
            PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
            GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 98 (39.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 32/114 (28%), Positives = 56/114 (49%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IFVG L     E  + +   +FG  L+   +++D ++G SKG+AF  +     +D A  A
Sbjct:   102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKV 479
             +NG  + ++ +TV  A +     K E+      A++ +A Q  +  P   P +V
Sbjct:   162 MNGQFLCNRAITVSYAFK--RDSKGERHGTA--AERMLAAQNPLF-PKDRPHQV 210

 Score = 83 (34.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 30/103 (29%), Positives = 45/103 (43%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     +YVGGL    +E  +     Q    +  N   P D V     NH+
Sbjct:     5 PIVERNQDAT-----IYVGGLDEKVSESILWELMVQAGPVVSVNM--PKDRVT---ANHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               F FVE    E+A  A+ +  +I   G P+KV + S +  ++
Sbjct:    55 G-FGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 96


>UNIPROTKB|Q09442 [details] [associations]
            symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
            GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
            GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
            PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
            SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
            EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
            KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 98 (39.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 32/114 (28%), Positives = 56/114 (49%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             IFVG L     E  + +   +FG  L+   +++D ++G SKG+AF  +     +D A  A
Sbjct:   102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161

Query:   426 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKV 479
             +NG  + ++ +TV  A +     K E+      A++ +A Q  +  P   P +V
Sbjct:   162 MNGQFLCNRAITVSYAFK--RDSKGERHGTA--AERMLAAQNPLF-PKDRPHQV 210

 Score = 83 (34.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 30/103 (29%), Positives = 45/103 (43%)

Query:   232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE 291
             P+    Q AT     +YVGGL    +E  +     Q    +  N   P D V     NH+
Sbjct:     5 PIVERNQDAT-----IYVGGLDEKVSESILWELMVQAGPVVSVNM--PKDRVT---ANHQ 54

Query:   292 KKFAFVEMRSVEEASNAMALDGII-FEGAPVKVRRPSDYNPSL 333
               F FVE    E+A  A+ +  +I   G P+KV + S +  ++
Sbjct:    55 G-FGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 96


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 116 (45.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNG---IKMGDKTLTVRRANQGANQPKP 450
             +NG   I++  ++   R  +  AN  +P
Sbjct:    67 MNGKVRIRVLSRSPVSRMGHPPANPSRP 94


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 116 (45.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 24/83 (28%), Positives = 40/83 (48%)

Query:   361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTD 420
             + G   ++VG  P+  TE ++     S G +    +V DRETG  +G+AF  + +     
Sbjct:     1 MSGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQ 60

Query:   421 IACAALNGIKMGDKTLTVRRANQ 443
              A   +NG +   + L V  AN+
Sbjct:    61 RAVEQMNGAEFNGRPLRVNLANK 83


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 131 (51.2 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 24/82 (29%), Positives = 45/82 (54%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++F+GGL Y  TE  + E    +G +   D+++DRET  S+G+ F  +++      A AA
Sbjct:    24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83

Query:   426 LNGIKMGDKTLTVRRANQGANQ 447
             +NG ++  + + V  A +   +
Sbjct:    84 MNGKQVDGRMIRVDEAGKSGGR 105


>TAIR|locus:2075676 [details] [associations]
            symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
            PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
            EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
            RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
            ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
            PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
            KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
            HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
            PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
            Uniprot:Q9SD61
        Length = 352

 Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 30/87 (34%), Positives = 50/87 (57%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             ++VGG+P+  TE  +  +   +G +   +L++D+ TG SKG+AF  Y+D   T +A   L
Sbjct:    38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQE 453
             NG  +  +T+ V     GA + K E+E
Sbjct:    98 NGALVLGRTIKVDHC--GAYK-KHEEE 121


>UNIPROTKB|F1NYP4 [details] [associations]
            symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
            EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
            EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
            EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
            Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
        Length = 361

 Score = 110 (43.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query:   362 EGPD--RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             EGP+   +F+  LP  F +A++ ++   FG +    +  DR T  SK + F  + + +  
Sbjct:   271 EGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASA 330

Query:   420 DIACAALNGIKMGDKTLTVR-RANQGANQP 448
               A  A+NG ++G K L V+ +  + AN+P
Sbjct:   331 QAAIQAMNGFQIGMKRLKVQLKRPKDANRP 360

 Score = 68 (29.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 25/90 (27%), Positives = 40/90 (44%)

Query:   287 YINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNP-N 345
             Y+N    FA  +M+ +     A+ ++G+    AP+         P + A   PS P+P  
Sbjct:   141 YLNPMAAFAAAQMQQMA----ALNMNGLA--AAPMTPTSGGSTPPGITAPAVPSIPSPIG 194

Query:   346 LNLAAVGLTPGSAGGLEGPDRIFVGGL-PY 374
             +N    GL P  A G    + +F  G+ PY
Sbjct:   195 VN-GFTGLPP-QANGQPAAEAVFANGIHPY 222

 Score = 45 (20.9 bits), Expect = 0.00057, Sum P(2) = 0.00057
 Identities = 21/59 (35%), Positives = 24/59 (40%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 275
             MF  +  QFGA        M QQA   A     G L P A   + A    Q MAA+  N
Sbjct:   107 MFNPMAIQFGAYGAYAQALMQQQAAIMASVAQGGYLNPMA---AFAAAQMQQMAALNMN 162


>UNIPROTKB|B4DQL3 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
            EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
            Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
        Length = 260

 Score = 122 (48.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query:   362 EGPD--RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             EGPD   IF+  LP  FT+++I ++   FG +    +  DR T  SK + F  + + +  
Sbjct:   170 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 229

Query:   420 DIACAALNGIKMGDKTLTVR-RANQGANQP 448
               A  A+NG ++G K L V+ +  + AN+P
Sbjct:   230 QAAIQAMNGFQIGMKRLKVQLKRPKDANRP 259

 Score = 48 (22.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 275
             MF  +  QFGA        M QQA   A   +   L P A   ++A    Q MAAI  N
Sbjct:    10 MFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSPMA---TMAAVQMQHMAAINAN 63


>ASPGD|ASPL0000074275 [details] [associations]
            symbol:AN4665 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
            HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
            ProteinModelPortal:Q5B465 STRING:Q5B465
            EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
            OMA:VFSQNRY Uniprot:Q5B465
        Length = 279

 Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             I++GGLP+  +E  I  +   +G     +LV+D+ETG S+G+AF  Y+D   TD+A   L
Sbjct:    35 IYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNL 94

Query:   427 NGIKMGDKTLTV 438
              G  +  + L V
Sbjct:    95 GGATVLGRVLRV 106


>UNIPROTKB|E9PQ56 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
            InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
            IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
            Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
            Uniprot:E9PQ56
        Length = 323

 Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   172 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 199

 Score = 106 (42.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   208 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 267

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   268 SMNLFDLGGQYLRVGKA 284

 Score = 70 (29.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
 Identities = 28/99 (28%), Positives = 45/99 (45%)

Query:   231 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 290
             + + A  Q+A     RVYVG +     E ++   F+       G       +  +V + H
Sbjct:    97 LQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIKSIDMSWDSVTMKH 151

Query:   291 EKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
              K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   152 -KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 189


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 116 (45.9 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNGIKMGDKTLTVRRANQGAN 446
             +NG  +  + + V +A + ++
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSD 87

 Score = 37 (18.1 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query:   505 RQEGGKFAFCSPTFCYKESGLIYTDRRLHN 534
             R +GG + + S    Y++S   Y     HN
Sbjct:   145 RSQGGSYGYRSSGGSYRDS---YDSYATHN 171


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 116 (45.9 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNGIKMGDKTLTVRRANQGAN 446
             +NG  +  + + V +A + ++
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSD 87

 Score = 37 (18.1 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query:   505 RQEGGKFAFCSPTFCYKESGLIYTDRRLHN 534
             R +GG + + S    Y++S   Y     HN
Sbjct:   145 RSQGGSYGYRSSGGSYRDS---YDSYATHN 171


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 116 (45.9 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNGIKMGDKTLTVRRANQGAN 446
             +NG  +  + + V +A + ++
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSD 87

 Score = 37 (18.1 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query:   505 RQEGGKFAFCSPTFCYKESGLIYTDRRLHN 534
             R +GG + + S    Y++S   Y     HN
Sbjct:   145 RSQGGSYGYRSSGGSYRDS---YDSYATHN 171


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 113 (44.8 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++F+GGL ++ T+  +RE    +G +    +VKDR+T  S+G+ F  +      D A  A
Sbjct:     3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62

Query:   426 LNGIKMGDKTLTVRRANQ 443
             +N  +   + + V +A++
Sbjct:    63 MNNQEFDGRIIRVDKASE 80


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 113 (44.8 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 26/81 (32%), Positives = 42/81 (51%)

Query:   364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423
             P +IFVGGL        ++E   SFG +    +V DRE+G S+G+ F  Y  + V + A 
Sbjct:    35 PSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAM 94

Query:   424 AALNGIKMGDKTLTVRRANQG 444
              A+   ++  + + V  A+ G
Sbjct:    95 QAMQNKELDGRIIGVHPADSG 115


>UNIPROTKB|F1LRL1 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
            Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
        Length = 384

 Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 49/176 (27%), Positives = 76/176 (43%)

Query:   317 EGAPVKV----RRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGG 371
             +GA +K+      P   N P+   + GPS  N N       +  G+A   +    + V  
Sbjct:     1 QGAGLKIIISTMEPQVSNGPTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNY 56

Query:   372 LPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM 431
             LP   T+ + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++
Sbjct:    57 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 116

Query:   432 GDKTLTVRRANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
               KT+ V  A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   117 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 172


>UNIPROTKB|I3LVL9 [details] [associations]
            symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
            kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
            InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
            Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
        Length = 406

 Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:    22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:    82 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 109

 Score = 106 (42.4 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   118 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 177

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   178 SMNLFDLGGQYLRVGKA 194

 Score = 71 (30.1 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
 Identities = 28/100 (28%), Positives = 46/100 (46%)

Query:   230 VMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN 289
             ++ + A  Q+A     RVYVG +     E ++   F+       G       +  +V + 
Sbjct:     6 LLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIKSIDMSWDSVTMK 60

Query:   290 HEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
             H K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:    61 H-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 99


>UNIPROTKB|D4AAT0 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
            Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
        Length = 351

 Score = 133 (51.9 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 379
             +    P   N P+   + GPS  N N       +  G+A   +    + V  LP   T+ 
Sbjct:     3 ISTMEPQVSNGPTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQE 58

Query:   380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439
             + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V 
Sbjct:    59 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 118

Query:   440 RANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   119 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 166


>TAIR|locus:504955752 [details] [associations]
            symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
            KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
            EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
            ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
            EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
            TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
            ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
        Length = 358

 Score = 133 (51.9 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 30/106 (28%), Positives = 53/106 (50%)

Query:   355 PGSAGGLEGPD----RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 410
             P  AGG +  D    +IFVGG+P   TE ++++    +G +    +++D ET  S+G+ F
Sbjct:    95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154

Query:   411 CVYQDLSVTDIACAALNGIKMGDKTLTVRRAN--QGANQPKPEQES 454
              ++    V D   +  N I M D  + +++A   +  N+  P   S
Sbjct:   155 VIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGS 200


>UNIPROTKB|A2VDK5 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
            IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
            STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
            KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
        Length = 366

 Score = 133 (51.9 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 379
             +    P   N P+   + GPS  N N       +  G+A   +    + V  LP   T+ 
Sbjct:     5 ISTMEPQVSNGPTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQE 60

Query:   380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439
             + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V 
Sbjct:    61 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 120

Query:   440 RANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   121 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168


>UNIPROTKB|J9PAL3 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
            RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
            Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
            Uniprot:J9PAL3
        Length = 366

 Score = 133 (51.9 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 379
             +    P   N P+   + GPS  N N       +  G+A   +    + V  LP   T+ 
Sbjct:     5 ISTMEPQVSNGPTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQE 60

Query:   380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439
             + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V 
Sbjct:    61 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 120

Query:   440 RANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   121 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168


>ASPGD|ASPL0000005213 [details] [associations]
            symbol:AN6074 species:162425 "Emericella nidulans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
            cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
            "mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
            Uniprot:C8V2S8
        Length = 293

 Score = 131 (51.2 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 30/96 (31%), Positives = 47/96 (48%)

Query:   363 GPDR----IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 418
             GPDR    +F+G +PY  TE Q++++L + G +  F L+ + ETG  KGY F  + D   
Sbjct:     2 GPDRAGKSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADA 61

Query:   419 TDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 454
                A   LN  ++  + + V   +       PE  S
Sbjct:    62 AASAVRNLNDYEIMGRKIRVDWPHNNEKDSVPEDYS 97


>UNIPROTKB|Q3SZM1 [details] [associations]
            symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
            phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
            regulation of phosphatase activity" evidence=ISS] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
            GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
            UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
            STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
            KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
            GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
            HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
            OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
            Uniprot:Q3SZM1
        Length = 296

 Score = 131 (51.2 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 28/73 (38%), Positives = 38/73 (52%)

Query:   364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423
             P  I+VG LP    E QIR     FG +  F L + ++TGNSKGY F  ++   V  IA 
Sbjct:    44 PGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAA 103

Query:   424 AALNGIKMGDKTL 436
               +N    G++ L
Sbjct:   104 ETMNNYLFGERLL 116


>UNIPROTKB|F1LRX3 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
            Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
        Length = 380

 Score = 133 (51.9 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 379
             +    P   N P+   + GPS  N N       +  G+A   +    + V  LP   T+ 
Sbjct:     5 ISTMEPQVSNGPTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQE 60

Query:   380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439
             + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V 
Sbjct:    61 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 120

Query:   440 RANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   121 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168


>UNIPROTKB|F1P856 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
            Ensembl:ENSCAFT00000006315 Uniprot:F1P856
        Length = 382

 Score = 133 (51.9 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 379
             +    P   N P+   + GPS  N N       +  G+A   +    + V  LP   T+ 
Sbjct:    21 ISTMEPQVSNGPTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQE 76

Query:   380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439
             + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V 
Sbjct:    77 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 136

Query:   440 RANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   137 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 184


>MGI|MGI:107427 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
            PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
            ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
            PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
            Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
            InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
            Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
        Length = 385

 Score = 133 (51.9 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 379
             +    P   N P+   + GPS  N N       +  G+A   +    + V  LP   T+ 
Sbjct:    10 ISTMEPQVSNGPTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQE 65

Query:   380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439
             + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V 
Sbjct:    66 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 125

Query:   440 RANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   126 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 173


>UNIPROTKB|G4MR34 [details] [associations]
            symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
            subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
            ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
            GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
        Length = 305

 Score = 131 (51.2 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 31/89 (34%), Positives = 45/89 (50%)

Query:   364 PDRI-FVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 422
             P R+ FVG +PY  +E QI ++    G +  F LV DRETG  KG+ F  Y D      A
Sbjct:     6 PSRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASA 65

Query:   423 CAALNGIKMGDKTLTVRRANQGANQPKPE 451
                LN  ++  + L V  +N+  +   P+
Sbjct:    66 VRNLNDTEIMGRKLRVDFSNEKPSTNDPD 94


>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
            symbol:hnrnpa0b "heterogeneous nuclear
            ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
            EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
            ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
            GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
            OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
            Uniprot:Q6NYW8
        Length = 314

 Score = 99 (39.9 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             +IFVGGL     E  + E    FG +   +++ D++TG  +G+ F  ++D    D A   
Sbjct:   100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVL 159

Query:   426 ----LNGIKMGDKTLTVRRANQGA 445
                 +NG K+  K    ++  Q A
Sbjct:   160 KFHMINGHKVEVKKALTKQEIQAA 183

 Score = 74 (31.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
 Identities = 25/82 (30%), Positives = 38/82 (46%)

Query:   246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVV--NVYINHEKKFAFVEMRSVE 303
             +++VGGL        + ++F Q      GN     D VV  N  +   + F FV   + E
Sbjct:     9 KLFVGGLNVQTTNDGLRSYFEQF-----GNLT---DCVVVQNDQLQRSRCFGFVTYSTSE 60

Query:   304 EASNAMALDGIIFEGAPVKVRR 325
             EA  AMA    + +G  V+V+R
Sbjct:    61 EADAAMAARPHVVDGKNVEVKR 82


>TAIR|locus:2176222 [details] [associations]
            symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
            SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
            EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
            RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
            UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
            STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
            EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
            KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
            PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
            Uniprot:Q9LU44
        Length = 804

 Score = 137 (53.3 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 43/146 (29%), Positives = 68/146 (46%)

Query:   303 EEASNAMA-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA---VGLTPGSA 358
             +E  N +A L G + E + +K        P  + +  P   N     +A   +G TP   
Sbjct:   414 DEYQNFLAELGGTVPESS-LKQSATLALGPGSSGSNPPWANNAGNGASAHPGLGSTPTKP 472

Query:   359 GGLEGPD-RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 417
                E  +  +++G LP    +  +  L  SFG +    ++KDR TG SKGY F  Y D+ 
Sbjct:   473 PSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQ 532

Query:   418 VTDIACAALNGIKMGDKTLTVRRANQ 443
             + + A  A+NG +   +TL VR A +
Sbjct:   533 MANTAVQAMNGYRFEGRTLAVRIAGK 558


>ASPGD|ASPL0000065410 [details] [associations]
            symbol:AN7456 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACD01000129 EMBL:BN001304 eggNOG:COG0724
            HOGENOM:HOG000276232 KO:K12833 OrthoDB:EOG4HB1W3 RefSeq:XP_680725.1
            ProteinModelPortal:Q5AW74 SMR:Q5AW74 STRING:Q5AW74
            EnsemblFungi:CADANIAT00000549 GeneID:2869562 KEGG:ani:AN7456.2
            Uniprot:Q5AW74
        Length = 172

 Score = 120 (47.3 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 37/107 (34%), Positives = 53/107 (49%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FV  L Y  T  Q+ +L   FGP+R    ++     NSKG AF VY+D+     AC  L
Sbjct:    72 LFVKNLNYNVTAEQLFDLFGKFGPIRQ---IRQGIANNSKGTAFVVYEDVHDAKQACDKL 128

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG 473
             NG    ++ L V       +QP+   +S    A++Q  L+RL  Q G
Sbjct:   129 NGFNFQNRYLVVLY-----HQPEKMLKSKEDLAERQENLERLKQQHG 170


>UNIPROTKB|F1NLH0 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
            EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
            Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
        Length = 371

 Score = 132 (51.5 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 46/168 (27%), Positives = 71/168 (42%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 379
             +    P   N P+   T GPS  + N       +  G+A   +    + V  LP   T+ 
Sbjct:    10 ISTMEPQVSNGPTSNTTNGPSSNSRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQE 65

Query:   380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439
             + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V 
Sbjct:    66 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 125

Query:   440 RANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   126 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 173


>RGD|1560027 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
            EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
            ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
            PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
            InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
            Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 132 (51.5 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 44/157 (28%), Positives = 68/157 (43%)

Query:   331 PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 390
             P+   + GPS  N N       +  G+A   +    + V  LP   T+ + R L  S G 
Sbjct:     9 PTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 64

Query:   391 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP 450
             +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   + 
Sbjct:    65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124

Query:   451 EQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
                 V  L     Q  L++L  Q G + +  + + QV
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161


>UNIPROTKB|O09032 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
            CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
            RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
            SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
            KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
            ArrayExpress:O09032 Genevestigator:O09032
            GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 132 (51.5 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 44/157 (28%), Positives = 68/157 (43%)

Query:   331 PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 390
             P+   + GPS  N N       +  G+A   +    + V  LP   T+ + R L  S G 
Sbjct:     9 PTSNTSNGPSSNNRN---CPSPMQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 64

Query:   391 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP 450
             +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   + 
Sbjct:    65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124

Query:   451 EQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
                 V  L     Q  L++L  Q G + +  + + QV
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 111 (44.1 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNGIKMGDKTLTV 438
             +NG  +  + + V
Sbjct:    67 MNGKSVDGRQIRV 79


>UNIPROTKB|E9PMU7 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
            HGNC:HGNC:17042 IPI:IPI00976817 ProteinModelPortal:E9PMU7
            SMR:E9PMU7 Ensembl:ENST00000531897 ArrayExpress:E9PMU7 Bgee:E9PMU7
            Uniprot:E9PMU7
        Length = 247

 Score = 128 (50.1 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   150 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 209

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   210 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 237


>POMBASE|SPBC887.05c [details] [associations]
            symbol:cwf29 "RNA-binding protein Cwf29" species:4896
            "Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
            assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
            GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
            HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
            RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
            STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
            KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
            Uniprot:O94290
        Length = 217

 Score = 126 (49.4 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 37/143 (25%), Positives = 69/143 (48%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             I++G L +   E  I  +   FG     +LV+D+ETG SKG+AF  Y+D   T +A   +
Sbjct:    33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92

Query:   427 NGIKMGDKTLTVRR-ANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPS---KVVCL 482
               +K+ D+ + V   A+    Q + E  +++   +   +L    +   ++P    K +  
Sbjct:    93 TNVKLLDRLVRVDHVASYKVPQKEKEPANLVPLGESGSSLSVSTINTSNLPDHDYKTIIQ 152

Query:   483 TQVVSADELKDDEEYEEILEDMR 505
              +V      KD+++   +L+ MR
Sbjct:   153 NEVEQTLSPKDEKD---LLDPMR 172


>UNIPROTKB|H0YCP8 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
            Uniprot:H0YCP8
        Length = 273

 Score = 129 (50.5 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 45/159 (28%), Positives = 75/159 (47%)

Query:   285 NVYINHEKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSDYN-PSLAATLGPSQP 342
             +V + H K FAFVE    E A  A+  ++ ++  G  +KVR+ +  + P       P +P
Sbjct:    29 SVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVRQGAKASIPQACRAAPPRKP 87

Query:   343 NPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402
                  +A  GLT  S   +  P       LP   ++  I+ + E+FG ++   L +D  T
Sbjct:    88 F----VAGPGLTGLS---ISPP-------LPQDLSDDDIKSVFEAFGKIKSCTLARDPTT 133

Query:   403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441
             G  KGY F  Y+    +  A +++N   +G + L V +A
Sbjct:   134 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 172


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 132 (51.5 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 42/157 (26%), Positives = 71/157 (45%)

Query:   331 PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 390
             PS  ++ GP+  + N   + V +  GS    +    + V  LP   T+ +++ L  S G 
Sbjct:    38 PSCTSSNGPNSVS-NTCTSPVEMPNGSE---DSKTNLIVNYLPQNMTQEELKSLFGSIGE 93

Query:   391 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP 450
             +    LV+D+ TG S GY F  Y +    + A   LNG+++  KT+ V  A   +   + 
Sbjct:    94 IESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 153

Query:   451 EQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
                 V  L     Q  L++L  Q G + +  + + QV
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQV 190


>UNIPROTKB|E9PN18 [details] [associations]
            symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
            HGNC:HGNC:17042 IPI:IPI00983055 ProteinModelPortal:E9PN18
            SMR:E9PN18 Ensembl:ENST00000529999 ArrayExpress:E9PN18 Bgee:E9PN18
            Uniprot:E9PN18
        Length = 263

 Score = 128 (50.1 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   150 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 209

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   210 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 237


>TAIR|locus:2036520 [details] [associations]
            symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
            EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
            RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
            UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
            PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
            EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
            TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
            ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
        Length = 292

 Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query:   359 GGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 418
             G LE   RIFVGGL +  TE Q+    + +G +    ++  R+TG  +G+ F  + D   
Sbjct:     8 GNLES--RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG 65

Query:   419 TDIACAALNGIKMGDKTLTVRRA 441
              D A   ++G ++G+K ++V +A
Sbjct:    66 ADDAIKHMHGRELGNKVISVNKA 88


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 28/94 (29%), Positives = 46/94 (48%)

Query:   364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423
             P ++F+GGL     E  +  +   +G +    L+KDRET  S+G+AF  ++  +    A 
Sbjct:     7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 66

Query:   424 AALNGIKMGDKTLTVRRANQGANQPKPEQESVLL 457
               +NG  +  K + V +A       KP  E+V L
Sbjct:    67 RDMNGKSLDGKAIKVEQAT------KPSFENVYL 94


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 21/84 (25%), Positives = 46/84 (54%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   ++ +++   SFG +    ++ DRETG S+G+ F  +      + A   
Sbjct:    36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query:   426 LNGIKMGDKTLTVRRANQGANQPK 449
             ++G ++  + + V  A + ++ P+
Sbjct:    96 MDGKELNGRQIRVNLATERSSAPR 119


>WB|WBGene00008688 [details] [associations]
            symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0071688 "striated muscle
            myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] [GO:0018991 "oviposition"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
            GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
            GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
            GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
            eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
            RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
            STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
            KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
            HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
            Uniprot:Q95QL3
        Length = 394

 Score = 112 (44.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query:   363 GPDR-IFVGGLPYYFTE-AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY-QDLSVT 419
             G D  IFVG LP+  TE A I       GP+    +V+D++TG  KG+AF  + QD SV+
Sbjct:   243 GKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS 302

Query:   420 DIACAALNGIKMGDKTLTVRR 440
                  ++  IKM  + L + +
Sbjct:   303 --LALSMETIKMEKRDLRITK 321

 Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query:   240 ATRHARRVYVGGLPPTANEQSVATFFS 266
             A  +A  V+VG +P T NE+SV   FS
Sbjct:   138 AAENALTVFVGNMPLTMNEKSVRRIFS 164


>UNIPROTKB|G4ND38 [details] [associations]
            symbol:MGG_00985 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:CM001235 Gene3D:3.30.70.330
            GO:GO:0003676 RefSeq:XP_003717964.1 ProteinModelPortal:G4ND38
            EnsemblFungi:MGG_00985T0 GeneID:2674402 KEGG:mgr:MGG_00985
            Uniprot:G4ND38
        Length = 454

 Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 53/205 (25%), Positives = 86/205 (41%)

Query:   247 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK----------FAF 296
             V++G LP TA    V   F  ++   GG+        VN+ ++ +KK          FA+
Sbjct:   112 VWIGNLPFTATRADV---FKWLVENSGGSITEDAITRVNLPLSKDKKPGSERRDNKGFAY 168

Query:   297 VEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYN----PSLAATL-GPSQPNPNLNL-AA 350
             V+  + +    A+AL    + G  + ++    +     P+ AAT  G  +  P     AA
Sbjct:   169 VDFAAYDACIAAIALSESDYGGRKLLIKDSKSFEGRPAPAPAATADGADETKPGSKAGAA 228

Query:   351 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 410
              G T  +A       +I+VG LPY  TE  +R   E  G +    +    ++G  KGY +
Sbjct:   229 AGAT--AAAPSTNTKKIYVGNLPYDATEETLRWQFEKCGTIEWAKVATFEDSGKCKGYGW 286

Query:   411 CVYQDLSVTDIACAALNGIKMGDKT 435
               + D +  D A      IK   +T
Sbjct:   287 VRFADSAACDWAVKGFVKIKEAVET 311


>UNIPROTKB|D4A7H6 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
            SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
            Uniprot:D4A7H6
        Length = 346

 Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 42/151 (27%), Positives = 67/151 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GP+  N N +      +P  +G  E     + V  LP   T+ +++ L  S G +    L
Sbjct:    17 GPTTVNNNCS------SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL 70

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   +     V 
Sbjct:    71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              L     Q  L++L  Q G + +  + + QV
Sbjct:   131 GLPKTMTQKELEQLFSQYGRIITSRILVDQV 161


>DICTYBASE|DDB_G0290307 [details] [associations]
            symbol:DDB_G0290307 "ELAVL1-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
            ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
            KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
        Length = 459

 Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 29/116 (25%), Positives = 53/116 (45%)

Query:   331 PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 390
             P++  T  P              +  ++        +F+  LP  +T   +R +  +FG 
Sbjct:    65 PAVVTTPPPPTTTTTTTTTMTQTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGE 124

Query:   391 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446
             +    ++ D  TG S+G+ F  ++D++    A  ++NG K+ +KTL VR AN   N
Sbjct:   125 IDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANSDPN 180


>RGD|1307630 [details] [associations]
            symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
            GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
            Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
        Length = 355

 Score = 104 (41.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query:   362 EGPD--RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             EGP+   + +  LP  F +A++ ++   FG +    +  DR T  SK + F  + + +  
Sbjct:   265 EGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASA 324

Query:   420 DIACAALNGIKMGDKTLTVR-RANQGANQP 448
               A  A+NG ++G K L V+ +  + AN+P
Sbjct:   325 QTAIQAMNGFQIGMKRLKVQLKRPKDANRP 354

 Score = 68 (29.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 25/90 (27%), Positives = 40/90 (44%)

Query:   287 YINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNP-N 345
             Y+N    FA  +M+ +     A+ ++G+    AP+         P + A   PS P+P  
Sbjct:   133 YLNPMAAFAAAQMQQMA----ALNMNGLA--AAPMTPTSGGSTPPGITAPAVPSIPSPIG 186

Query:   346 LNLAAVGLTPGSAGGLEGPDRIFVGGL-PY 374
             +N    GL P  A G    + +F  G+ PY
Sbjct:   187 VN-GFTGLPP-QANGQPAAEAVFANGIHPY 214


>UNIPROTKB|E2R3E1 [details] [associations]
            symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
            Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
        Length = 429

 Score = 108 (43.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 23/82 (28%), Positives = 40/82 (48%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG LPY   E+ + E     G +    +V+DR TG  +G+ + ++++     +A    
Sbjct:   289 VFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALKLN 348

Query:   427 NGIKMGDKTLTVRRANQGANQP 448
             N   MG K   +R  N+   +P
Sbjct:   349 NSELMGRKLRVMRSVNKEKLKP 370

 Score = 66 (28.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 23/103 (22%), Positives = 52/103 (50%)

Query:   238 QQATRHARRVYVGGLPPTANEQSVATFFSQV--MAAIGGNTAGPGD-------AVVNVYI 288
             ++  ++ R V+VG LP T N++ + +FF +   + ++   +  P +       A +   I
Sbjct:   178 EEKLKNERTVFVGNLPVTCNKKKLKSFFREYGQIDSVRFRSLIPAEGTLSKKLAAIKRKI 237

Query:   289 NHEKKF--AFVEMRSVEEASNAMALDGI-IFEGAPVKVRRPSD 328
             + ++K+  A+V  +    A+ A+  +G  I +G  ++V   S+
Sbjct:   238 HPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLASE 280


>ZFIN|ZDB-GENE-980526-76 [details] [associations]
            symbol:elavl3 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
            EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
            SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
            InParanoid:Q6P105 Uniprot:Q6P105
        Length = 359

 Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 44/153 (28%), Positives = 68/153 (44%)

Query:   338 GPSQPN-PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GPS  + PN     V  T G+    +    + V  LP   T+ + + L  S G +    L
Sbjct:    15 GPSGTSLPN---GPVISTNGATD--DSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKL 69

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D +  D A   LNG+K+  KT+ V  A   +   +     V 
Sbjct:    70 VRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 129

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQVVS 487
              L     Q  +++L  Q G + +  + + QV +
Sbjct:   130 GLPKTMSQKDMEQLFSQYGRIITSRILVDQVTA 162

 Score = 103 (41.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 30/93 (32%), Positives = 45/93 (48%)

Query:   347 NLAAVGLT-PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNS 405
             +LA V LT P  AG       IFV  L     E+ + +L   FG +    +++D  T   
Sbjct:   262 SLAGVNLTGPTGAGWC-----IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKC 316

Query:   406 KGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438
             KG+ F    +     +A A+LNG ++GD+ L V
Sbjct:   317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349

 Score = 51 (23.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   235 AMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 267
             A    A+     +YV GLP T +++ +   FSQ
Sbjct:   114 ARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQ 146


>MGI|MGI:1100887 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
            IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
            ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
            PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
            Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
            InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
            GermOnline:ENSMUSG00000008489 Uniprot:Q60899
        Length = 360

 Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 42/151 (27%), Positives = 67/151 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GP+  N N +      +P  +G  E     + V  LP   T+ +++ L  S G +    L
Sbjct:    17 GPTTVNNNCS------SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL 70

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   +     V 
Sbjct:    71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              L     Q  L++L  Q G + +  + + QV
Sbjct:   131 GLPKTMTQKELEQLFSQYGRIITSRILVDQV 161


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 117 (46.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +  TE  + ++   +G +    +VKDRE+  S+G+ F  +++      A  A
Sbjct:     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query:   426 LNGIKMGDKTLTVRRANQGAN 446
             +NG  +  + + V +A + +N
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSN 87


>UNIPROTKB|E9PSF1 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955 HGNC:HGNC:15818
            IPI:IPI00974044 ProteinModelPortal:E9PSF1 SMR:E9PSF1
            Ensembl:ENST00000342690 ArrayExpress:E9PSF1 Bgee:E9PSF1
            Uniprot:E9PSF1
        Length = 77

 Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 28/70 (40%), Positives = 38/70 (54%)

Query:   335 ATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGF 394
             A   PS   P   LAA G   GS        +IFVGGLPY+ T+A +R+  E FG +   
Sbjct:     6 APCAPSAGFPR-PLAAPGAMHGSQKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDIEEA 63

Query:   395 DLVKDRETGN 404
              ++ DR+TG+
Sbjct:    64 VVITDRQTGD 73


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNG 428
             +NG
Sbjct:    67 MNG 69


>SGD|S000001444 [details] [associations]
            symbol:IST3 "Component of the U2 snRNP" species:4932
            "Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
            assembly" evidence=IMP] [GO:0000349 "generation of catalytic
            spliceosome for first transesterification step" evidence=IMP]
            [GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
            transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
            snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
            EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
            GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
            ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
            MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
            EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
            GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
            Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
        Length = 148

 Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             I++G L    TE  I  +   +G      L +D  TG S+G+A+  Y+D   T +A   L
Sbjct:    33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92

Query:   427 NGIKMGDKTLTV 438
             NG K+G + L +
Sbjct:    93 NGFKIGGRALKI 104


>UNIPROTKB|E2R4B2 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
            Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
        Length = 278

 Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTP 205


>DICTYBASE|DDB_G0294559 [details] [associations]
            symbol:DDB_G0294559 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
            EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
            ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
            KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
        Length = 348

 Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 29/89 (32%), Positives = 45/89 (50%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             I+VGGL Y   E  +  +   +G +   +LV+++ETG S+G+ F  Y     T +A   L
Sbjct:    35 IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNL 94

Query:   427 NGIKMGDKTLTVRRANQGANQPKPEQESV 455
             NGI +  KT+ V        +PK   E +
Sbjct:    95 NGINLLGKTIKVDHVKD-YKRPKKNNEDL 122


>UNIPROTKB|E2RA48 [details] [associations]
            symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
            TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
            RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
            KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
        Length = 543

 Score = 128 (50.1 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             R++VG + Y   E  IR+    FGP++  D+  D  T   KG+AF  Y+      +A   
Sbjct:   114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173

Query:   426 LNGIKMGDKTLTVRR-ANQGANQPKPEQ 452
             +N + +G + + V R +N G  QP  +Q
Sbjct:   174 MNSVMLGGRNIKVGRPSNIGQAQPIIDQ 201

 Score = 106 (42.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:   365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424
             +RI+V  +    ++  I+ + E+FG ++   L +D  TG  KGY F  Y+    +  A +
Sbjct:   210 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 269

Query:   425 ALNGIKMGDKTLTVRRA 441
             ++N   +G + L V +A
Sbjct:   270 SMNLFDLGGQYLRVGKA 286

 Score = 70 (29.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 28/99 (28%), Positives = 45/99 (45%)

Query:   231 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 290
             + + A  Q+A     RVYVG +     E ++   F+       G       +  +V + H
Sbjct:    99 LQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIKSIDMSWDSVTMKH 153

Query:   291 EKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSD 328
              K FAFVE    E A  A+  ++ ++  G  +KV RPS+
Sbjct:   154 -KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 191


>UNIPROTKB|Q06AA6 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
            SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
            Uniprot:Q06AA6
        Length = 279

 Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTP 205


>UNIPROTKB|Q2KJ71 [details] [associations]
            symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
            OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
            IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
            STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
            KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
        Length = 281

 Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTP 205


>MGI|MGI:1933972 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
            IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
            SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
            PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
            CleanEx:MM_TRA2A Genevestigator:Q6PFR5
            GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
        Length = 281

 Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:   121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 180

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:   181 MELDGRRIRVDYSITKRAHTPTP 203


>UNIPROTKB|Q13595 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
            IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
            UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
            IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
            DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
            Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
            CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
            MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
            HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
            OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
            NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
            GermOnline:ENSG00000164548 Uniprot:Q13595
        Length = 282

 Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:   183 MELDGRRIRVDYSITKRAHTPTP 205


>RGD|1562563 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0042802 "identical protein binding"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
            UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
            Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
            Uniprot:B1WC25
        Length = 282

 Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:   121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 180

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:   181 MELDGRRIRVDYSITKRAHTPTP 203


>WB|WBGene00011730 [details] [associations]
            symbol:drr-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008340
            "determination of adult lifespan" evidence=IMP] [GO:0006412
            "translation" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0008340 GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005844
            GeneTree:ENSGT00530000063406 HSSP:P26368 EMBL:Z81120 PIR:T24858
            RefSeq:NP_499818.1 ProteinModelPortal:O45781 SMR:O45781
            DIP:DIP-26980N MINT:MINT-1066038 STRING:O45781 PaxDb:O45781
            EnsemblMetazoa:T12D8.2.1 EnsemblMetazoa:T12D8.2.2 GeneID:259546
            KEGG:cel:CELE_T12D8.2 UCSC:T12D8.2.1 CTD:259546 WormBase:T12D8.2
            eggNOG:NOG240551 InParanoid:O45781 OMA:YVTFENE NextBio:952074
            Uniprot:O45781
        Length = 207

 Score = 123 (48.4 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLE--SFGP--LRGFD--LVKDRETGNSKGYAFCVYQDLSVT 419
             + F+GGLPY      I  +L+   F    L+ FD  LV DR++G+ KG+A+  +++    
Sbjct:     7 KAFIGGLPYDSIATDIETILKHCKFTDEELKKFDIHLVHDRDSGSFKGFAYVTFENEQQM 66

Query:   420 DIACAALNGIKMGDKTLTVRRANQ 443
             + A + LNG   G++ L V RA Q
Sbjct:    67 NTAISGLNGADFGNRVLKVNRAQQ 90


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425
             ++FVGGL +   E  + ++   +G +    +VKDRET  S+G+ F  ++++     A  A
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   426 LNGIKMGDKTLTVRRANQGAN 446
             +NG  +  + + V +A + ++
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSD 87


>UNIPROTKB|Q12926 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
            EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
            RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
            UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
            STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
            PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
            Ensembl:ENST00000380110 Ensembl:ENST00000380117
            Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
            KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
            GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
            neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
            OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
            ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
            Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
        Length = 359

 Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 42/151 (27%), Positives = 67/151 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GP+  N N +      +P  +G  E     + V  LP   T+ +++ L  S G +    L
Sbjct:    17 GPTTINNNCS------SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL 70

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   +     V 
Sbjct:    71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              L     Q  L++L  Q G + +  + + QV
Sbjct:   131 GLPKTMTQKELEQLFSQYGRIITSRILVDQV 161


>FB|FBgn0037602 [details] [associations]
            symbol:CG8021 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
            [GO:0035145 "exon-exon junction complex" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
            GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
            RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
            EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
            UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
            OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
        Length = 91

 Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 26/87 (29%), Positives = 45/87 (51%)

Query:   357 SAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 416
             S+G +    ++FVG LP+     ++R     +G +   ++V DR+ G SK Y F V+   
Sbjct:     2 SSGFVRSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQR 61

Query:   417 SVTDIACAALNGIKMGDKTLTVRRANQ 443
                + A +  N   +  + LTV+RAN+
Sbjct:    62 DAFNSA-SNQNTHFLDGRVLTVQRANE 87


>UNIPROTKB|B1APY9 [details] [associations]
            symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
            protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
            SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
            Uniprot:B1APY9
        Length = 371

 Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 46/170 (27%), Positives = 70/170 (41%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFT 377
             +    P   N P+   + GPS  N N        +P   G    +    + V  LP   T
Sbjct:    10 ISTMEPQVSNGPTSNTSNGPSSNNRNCP------SPMQTGATTDDSKTNLIVNYLPQNMT 63

Query:   378 EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437
             + + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ 
Sbjct:    64 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 123

Query:   438 VRRANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
             V  A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   124 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 173


>UNIPROTKB|P26378 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
            eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
            EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
            EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
            IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
            RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
            RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
            PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
            MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
            PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
            Ensembl:ENST00000371823 Ensembl:ENST00000371824
            Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
            KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
            UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
            HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
            EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
            ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
            Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
        Length = 380

 Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 46/170 (27%), Positives = 70/170 (41%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFT 377
             +    P   N P+   + GPS  N N        +P   G    +    + V  LP   T
Sbjct:     5 ISTMEPQVSNGPTSNTSNGPSSNNRNCP------SPMQTGATTDDSKTNLIVNYLPQNMT 58

Query:   378 EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437
             + + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ 
Sbjct:    59 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 118

Query:   438 VRRANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
             V  A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   119 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168


>UNIPROTKB|B1APY8 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
            EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
            IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
            Uniprot:B1APY8
        Length = 385

 Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 46/170 (27%), Positives = 70/170 (41%)

Query:   321 VKVRRPSDYN-PSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFT 377
             +    P   N P+   + GPS  N N        +P   G    +    + V  LP   T
Sbjct:    10 ISTMEPQVSNGPTSNTSNGPSSNNRNCP------SPMQTGATTDDSKTNLIVNYLPQNMT 63

Query:   378 EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437
             + + R L  S G +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ 
Sbjct:    64 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 123

Query:   438 VRRANQGANQPKPEQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
             V  A   +   +     V  L     Q  L++L  Q G + +  + + QV
Sbjct:   124 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 173


>UNIPROTKB|B1AM49 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
            UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
            Ensembl:ENST00000359598 Uniprot:B1AM49
        Length = 387

 Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 42/151 (27%), Positives = 67/151 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GP+  N N +      +P  +G  E     + V  LP   T+ +++ L  S G +    L
Sbjct:    45 GPTTINNNCS------SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL 98

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   +     V 
Sbjct:    99 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 158

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              L     Q  L++L  Q G + +  + + QV
Sbjct:   159 GLPKTMTQKELEQLFSQYGRIITSRILVDQV 189


>UNIPROTKB|G3N063 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
            EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
        Length = 388

 Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 42/151 (27%), Positives = 67/151 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GP+  N N +      +P  +G  E     + V  LP   T+ +++ L  S G +    L
Sbjct:    46 GPTTINNNCS------SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL 99

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   +     V 
Sbjct:   100 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              L     Q  L++L  Q G + +  + + QV
Sbjct:   160 GLPKTMTQKELEQLFSQYGRIITSRILVDQV 190


>UNIPROTKB|E2RI94 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
            EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
            Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
        Length = 388

 Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 42/151 (27%), Positives = 67/151 (44%)

Query:   338 GPSQPNPNLNLAAVGLTPGSAGGLE-GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396
             GP+  N N +      +P  +G  E     + V  LP   T+ +++ L  S G +    L
Sbjct:    46 GPTTINNNCS------SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL 99

Query:   397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV- 455
             V+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   +     V 
Sbjct:   100 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159

Query:   456 -LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
              L     Q  L++L  Q G + +  + + QV
Sbjct:   160 GLPKTMTQKELEQLFSQYGRIITSRILVDQV 190


>UNIPROTKB|F1NPM7 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
            OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
            Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
        Length = 277

 Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query:   369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428
             V GL  Y TE  +RE+   +GPL G ++V D+ TG S+G+AF  ++ +  +  A    NG
Sbjct:   125 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 184

Query:   429 IKMGDKTLTVRRA-NQGANQPKP 450
             +++  + + V  +  + A+ P P
Sbjct:   185 MELDGRRIRVDYSITKRAHTPTP 207


>ASPGD|ASPL0000000406 [details] [associations]
            symbol:AN6501 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
            eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
            RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
            STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
            KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
        Length = 352

 Score = 101 (40.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 29/96 (30%), Positives = 45/96 (46%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FVG L    TE  + +    FG L     V   ++  SKGY F  + D   +D A A +
Sbjct:   103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANM 162

Query:   427 NGIKMGDKTLTVRRA--NQGANQPKPEQESVLLHAQ 460
             NG  + +K ++V+ A    G  +   +Q   +L AQ
Sbjct:   163 NGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ 198

 Score = 69 (29.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 24/82 (29%), Positives = 37/82 (45%)

Query:   247 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEAS 306
             VY+G L    ++  V     Q    +  N   P D V     +H+  + FVE  S E+A 
Sbjct:    15 VYIGNLDERVSDSLVWELMLQAGRIV--NVHLPKDRVTQ---SHQG-YGFVEFNSEEDAE 68

Query:   307 NAMAL-DGIIFEGAPVKVRRPS 327
              A  + +GI   G P++V + S
Sbjct:    69 YASRIMNGIRLYGKPIRVNKAS 90


>ZFIN|ZDB-GENE-990415-246 [details] [associations]
            symbol:elavl4 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
            EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
            Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
            Uniprot:F1R133
        Length = 408

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 43/157 (27%), Positives = 66/157 (42%)

Query:   331 PSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 390
             P+ A   GPS    N       +  G +   +    + V  LP   T+ + R L  S G 
Sbjct:    58 PNSATANGPSS---NSRSCPSPMQTGGSND-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 113

Query:   391 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP 450
             +    LV+D+ TG S GY F  Y D    + A   LNG+++  KT+ V  A   +   + 
Sbjct:   114 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 173

Query:   451 EQESV--LLHAQQQIALQRLMLQPGSVPSKVVCLTQV 485
                 V  L     Q  L++L  Q G + +  + + QV
Sbjct:   174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 210


>UNIPROTKB|Q5SZQ7 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
            HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
            EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
            KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
            NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
            STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
            EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
        Length = 415

 Score = 122 (48.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query:   362 EGPD--RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 419
             EGPD   IF+  LP  FT+++I ++   FG +    +  DR T  SK + F  + + +  
Sbjct:   325 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 384

Query:   420 DIACAALNGIKMGDKTLTVR-RANQGANQP 448
               A  A+NG ++G K L V+ +  + AN+P
Sbjct:   385 QAAIQAMNGFQIGMKRLKVQLKRPKDANRP 414

 Score = 48 (22.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query:   217 MFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 275
             MF  +  QFGA        M QQA   A   +   L P A   ++A    Q MAAI  N
Sbjct:   193 MFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSPMA---TMAAVQMQHMAAINAN 246


>TAIR|locus:4515103555 [details] [associations]
            symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
            UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
            EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
            TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
            Genevestigator:Q1G378 Uniprot:Q1G378
        Length = 175

 Score = 118 (46.6 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query:   366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423
             +I+VGGLP+      +R   E FG +   ++V DRETG S+GY F  ++D      AC
Sbjct:    53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRAC 110


>UNIPROTKB|E1C131 [details] [associations]
            symbol:E1C131 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
            EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
            EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
            EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
            EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
            EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
            EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
            EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
            IPI:IPI00822398 ProteinModelPortal:E1C131
            Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
        Length = 123

 Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query:   330 NPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPD----RIFVGGLPYYFTEAQIRELL 385
             N SL++    S P+ N ++  +  +PG+   +   D    ++F+G +P    E  ++ L 
Sbjct:    15 NTSLSSN--HSNPSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLF 72

Query:   386 ESFGPLRGFDLVKDRETGNSKGYAFCVY 413
             E FG +    ++KDR TG  KG AF  Y
Sbjct:    73 EEFGKIYELTVLKDRFTGMHKGCAFLTY 100


>UNIPROTKB|E5RGV5 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
            HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
            ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
            ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
        Length = 144

 Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 30/100 (30%), Positives = 46/100 (46%)

Query:   362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 421
             E P  ++VG L    TEA I +L    GP +   ++ D   GN   Y F  + +      
Sbjct:     4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAA 61

Query:   422 ACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQ 461
             A AA+NG K+  K + V  A   ++Q K    S ++  Q+
Sbjct:    62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR 101


>UNIPROTKB|F6UBL3 [details] [associations]
            symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
            Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
        Length = 133

 Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 25/64 (39%), Positives = 35/64 (54%)

Query:   352 GLTPGSAGGLEGPD--RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYA 409
             GL PG A  ++  D  ++FVG +P    E  ++ L E FG +    ++KDR TG  KG A
Sbjct:     2 GLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCA 61

Query:   410 FCVY 413
             F  Y
Sbjct:    62 FLTY 65


>UNIPROTKB|G4MTV6 [details] [associations]
            symbol:MGG_01579 "Pre-mRNA branch site protein p14"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
            ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
            GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
        Length = 115

 Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query:   367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426
             +FV  L Y  T  ++ +L   FGP+R    V+     N+KG AF VY+D+     AC  L
Sbjct:    15 LFVKNLSYNVTPEELFDLFGKFGPIRQ---VRQGIASNTKGTAFVVYEDVMDAKQACDKL 71

Query:   427 NGIKMGDKTLTV 438
             NG    ++ L V
Sbjct:    72 NGFNFQNRYLVV 83

WARNING:  HSPs involving 189 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      544       357   0.00080  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  439
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  213 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.80u 0.09s 31.89t   Elapsed:  00:00:01
  Total cpu time:  31.82u 0.09s 31.91t   Elapsed:  00:00:01
  Start:  Mon May 20 22:20:14 2013   End:  Mon May 20 22:20:15 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G60900 AT1G60900 AT1G60900	protein from Arabidopsis thaliana	9.9e-142
BLAST match view associations BLAST with ATU2AF65A ATU2AF65A ATU2AF65A AT4G36690	protein from Arabidopsis thaliana	3.4e-141
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 U2 small nuclear RNA auxiliary factor 2	protein from Bos taurus	1.2e-58
BLAST match view associations BLAST with u2af2a u2af2a u2af2a U2 small nuclear RNA auxiliary factor 2a	gene_product from Danio rerio	2.5e-58
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 Splicing factor U2AF 65 kDa subunit	protein from Homo sapiens	3.2e-58
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 Uncharacterized protein	protein from Canis lupus familiaris	4.0e-58
BLAST match view associations BLAST with U2af2 U2af2 U2af2 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein from Mus musculus	4.0e-58
BLAST match view associations BLAST with LOC690372 LOC690372 LOC690372 similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b	gene from Rattus norvegicus	4.0e-58
BLAST match view associations BLAST with u2af2b u2af2b u2af2b U2 small nuclear RNA auxiliary factor 2b	gene_product from Danio rerio	5.9e-57
BLAST match view associations BLAST with U2af50 U2af50 U2af50 U2 small nuclear riboprotein auxiliary factor 50	protein from Drosophila melanogaster	5.6e-52
BLAST match view associations BLAST with U2AF2 U2AF2 U2AF2 Splicing factor U2AF 65 kDa subunit	protein from Homo sapiens	1.1e-50
BLAST match view associations BLAST with LS2 LS2 LS2 Large Subunit 2	protein from Drosophila melanogaster	2.7e-45
BLAST match view associations BLAST with u2af2 u2af2 u2af2 U2 snRNP auxiliary factor large subunit	gene from Dictyostelium discoideum	1.2e-44
BLAST match view associations BLAST with uaf-1 uaf-1 uaf-1	gene from Caenorhabditis elegans	8.0e-37
BLAST match view associations BLAST with PF14_0656 PF14_0656 PF14_0656 U2 snRNP auxiliary factor, putative	gene from Plasmodium falciparum	7.9e-28
BLAST match view associations BLAST with PF14_0656 PF14_0656 PF14_0656 U2 snRNP auxiliary factor, putative	protein from Plasmodium falciparum 3D7	7.9e-28
BLAST match view associations BLAST with AT1G60830 AT1G60830 AT1G60830	protein from Arabidopsis thaliana	7.5e-13
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	4.4e-11
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	5.7e-11
BLAST match view associations BLAST with F1P133 F1P133 F1P133 Uncharacterized protein	protein from Gallus gallus	9.4e-11
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	9.7e-11
BLAST match view associations BLAST with RBM38 RBM38 RBM38 Uncharacterized protein	protein from Bos taurus	2.0e-10
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	2.0e-10
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	protein from Mus musculus	2.6e-10
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	gene from Rattus norvegicus	2.6e-10
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	3.9e-10
BLAST match view associations BLAST with CG10466 CG10466 CG10466	protein from Drosophila melanogaster	7.2e-10
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RBM24 protein	protein from Bos taurus	1.2e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Homo sapiens	1.2e-09
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	protein from Mus musculus	1.2e-09
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	gene from Rattus norvegicus	1.2e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	1.2e-09
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Gallus gallus	1.4e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	1.4e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	1.6e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	1.7e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	1.9e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	1.9e-09
BLAST match view associations BLAST with AT5G09880 AT5G09880 AT5G09880	protein from Arabidopsis thaliana	1.9e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	2.0e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Pongo abelii	2.0e-09
BLAST match view associations BLAST with Cstf2 Cstf2 Cstf2 cleavage stimulation factor, 3' pre-RNA subunit 2	protein from Mus musculus	2.0e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	2.1e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	2.1e-09
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	2.1e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	2.1e-09
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	protein from Mus musculus	2.2e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	2.2e-09
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA-binding motif protein, X-linked 2	protein from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with rbm24-b rbm24-b rbm24-b RNA-binding protein 24-B	protein from Xenopus laevis	2.4e-09
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	2.4e-09
BLAST match view associations BLAST with rbm24-a rbm24-a rbm24-a RNA-binding protein 24-A	protein from Xenopus laevis	2.5e-09
BLAST match view associations BLAST with rbm24 rbm24 rbm24 RNA-binding protein 24	protein from Xenopus (Silurana) tropicalis	2.7e-09
BLAST match view associations BLAST with rbm38 rbm38 rbm38 RNA binding motif protein 38	gene_product from Danio rerio	3.2e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	3.3e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-09
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	4.1e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Gallus gallus	4.2e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	4.3e-09
BLAST match view associations BLAST with AT2G33435 AT2G33435 AT2G33435	protein from Arabidopsis thaliana	4.3e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Bos taurus	4.4e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Canis lupus familiaris	4.4e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Splicing factor 3B subunit 4	protein from Homo sapiens	4.4e-09
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Uncharacterized protein	protein from Sus scrofa	4.4e-09
BLAST match view associations BLAST with Sf3b4 Sf3b4 Sf3b4 splicing factor 3b, subunit 4	protein from Mus musculus	4.4e-09
BLAST match view associations BLAST with Sf3b4 Sf3b4 Sf3b4 splicing factor 3b, subunit 4	gene from Rattus norvegicus	4.4e-09
BLAST match view associations BLAST with rbm24a rbm24a rbm24a RNA binding motif protein 24a	gene_product from Danio rerio	4.4e-09
BLAST match view associations BLAST with CstF-64 CstF-64 CstF-64 Cleavage stimulation factor 64 kilodalton subunit	protein from Drosophila melanogaster	4.5e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 RNA-binding motif protein, X-linked 2	protein from Homo sapiens	8.0e-09
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	9.7e-09
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Bos taurus	1.2e-08
BLAST match view associations BLAST with cstf2 cstf2 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2	gene_product from Danio rerio	1.2e-08
BLAST match view associations BLAST with sf3b4 sf3b4 sf3b4 splicing factor 3b, subunit 4	gene_product from Danio rerio	1.2e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	1.5e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Sus scrofa	1.8e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Cleavage stimulation factor subunit 2 tau variant	protein from Homo sapiens	1.8e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	gene from Rattus norvegicus	1.8e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein from Mus musculus	1.8e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	1.8e-08
BLAST match view associations BLAST with Rbp4 Rbp4 Rbp4 RNA-binding protein 4	protein from Drosophila melanogaster	2.0e-08
BLAST match view associations BLAST with rbm24b rbm24b rbm24b RNA binding motif protein 24b	gene_product from Danio rerio	3.1e-08
BLAST match view associations BLAST with LOC534630 LOC534630 LOC534630 Uncharacterized protein	protein from Bos taurus	4.2e-08
BLAST match view associations BLAST with DDB_G0285403 DDB_G0285403 DDB_G0285403 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	4.3e-08
BLAST match view associations BLAST with rbmx2 rbmx2 rbmx2 RNA binding motif protein, X-linked 2	gene_product from Danio rerio	4.9e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	5.2e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	5.2e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Uncharacterized protein	protein from Canis lupus familiaris	5.6e-08
BLAST match view associations BLAST with CSTF64 CSTF64 CSTF64 AT1G71800	protein from Arabidopsis thaliana	5.6e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding protein 39	protein from Homo sapiens	6.0e-08
BLAST match view associations BLAST with emb2444 emb2444 emb2444 AT2G18510	protein from Arabidopsis thaliana	6.1e-08
BLAST match view associations BLAST with CPS_0338 CPS_0338 CPS_0338 RNA-binding protein	protein from Colwellia psychrerythraea 34H	6.7e-08