Query 009076
Match_columns 544
No_of_seqs 402 out of 4252
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 20:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.1E-52 2.3E-57 442.2 37.7 303 236-538 167-482 (509)
2 TIGR01622 SF-CC1 splicing fact 100.0 2.6E-43 5.7E-48 365.6 26.5 275 242-539 87-429 (457)
3 KOG0147 Transcriptional coacti 100.0 1.1E-38 2.4E-43 307.7 16.3 275 240-536 175-506 (549)
4 KOG0120 Splicing factor U2AF, 100.0 3E-38 6.6E-43 309.9 16.8 298 232-538 163-472 (500)
5 TIGR01645 half-pint poly-U bin 100.0 6.2E-35 1.4E-39 297.8 22.7 178 242-443 105-283 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-34 3.9E-39 289.6 18.2 167 244-445 3-172 (352)
7 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.4E-31 1.4E-35 276.9 28.5 192 243-442 294-500 (509)
8 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-31 2.3E-36 285.1 20.0 226 246-537 2-236 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 2.4E-31 5.3E-36 271.5 17.8 221 243-537 57-286 (578)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-30 2.6E-35 277.0 22.5 243 244-537 88-343 (562)
11 KOG0117 Heterogeneous nuclear 100.0 7.9E-31 1.7E-35 246.3 17.0 223 242-537 81-310 (506)
12 TIGR01659 sex-lethal sex-letha 100.0 3.2E-30 7E-35 251.1 17.7 169 241-444 104-275 (346)
13 KOG0145 RNA-binding protein EL 100.0 3.5E-30 7.5E-35 225.0 15.1 249 244-537 41-337 (360)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.9E-29 4.2E-34 260.7 22.3 252 244-537 2-330 (481)
15 KOG0127 Nucleolar protein fibr 100.0 9.8E-30 2.1E-34 244.2 15.4 195 245-449 6-201 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-28 3E-33 254.3 20.8 269 245-538 97-454 (481)
17 KOG0124 Polypyrimidine tract-b 100.0 3.3E-29 7.1E-34 228.9 13.1 180 239-442 108-288 (544)
18 KOG0148 Apoptosis-promoting RN 100.0 3E-29 6.4E-34 220.8 11.4 212 242-538 4-218 (321)
19 TIGR01622 SF-CC1 splicing fact 100.0 1E-27 2.2E-32 249.0 22.4 188 244-441 186-445 (457)
20 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.3E-27 5E-32 238.1 20.6 195 244-444 89-349 (352)
21 KOG0148 Apoptosis-promoting RN 99.9 3.5E-27 7.6E-32 207.8 14.5 184 244-452 62-246 (321)
22 KOG0147 Transcriptional coacti 99.9 6.5E-27 1.4E-31 226.5 14.1 188 243-441 277-525 (549)
23 KOG0127 Nucleolar protein fibr 99.9 1.6E-25 3.4E-30 215.4 18.4 193 244-443 117-377 (678)
24 KOG0131 Splicing factor 3b, su 99.9 6.8E-26 1.5E-30 188.4 9.9 170 244-447 9-180 (203)
25 KOG0144 RNA-binding protein CU 99.9 2E-25 4.2E-30 209.1 13.5 170 242-446 32-208 (510)
26 KOG0123 Polyadenylate-binding 99.9 5.6E-25 1.2E-29 215.4 15.3 213 246-536 3-224 (369)
27 KOG0145 RNA-binding protein EL 99.9 1.1E-23 2.4E-28 184.4 17.8 195 243-443 126-357 (360)
28 KOG0123 Polyadenylate-binding 99.9 2.6E-24 5.6E-29 210.7 14.5 242 246-537 78-328 (369)
29 KOG0117 Heterogeneous nuclear 99.9 9.8E-23 2.1E-27 192.1 15.4 163 241-446 161-333 (506)
30 TIGR01648 hnRNP-R-Q heterogene 99.9 1.8E-22 3.8E-27 206.7 18.5 164 243-445 137-308 (578)
31 TIGR01659 sex-lethal sex-letha 99.9 1.1E-22 2.4E-27 198.4 12.9 139 363-538 106-253 (346)
32 KOG0109 RNA-binding protein LA 99.9 6.2E-23 1.3E-27 182.9 9.1 146 246-444 4-150 (346)
33 KOG0110 RNA-binding protein (R 99.9 2.9E-21 6.3E-26 192.6 17.2 257 241-537 382-672 (725)
34 TIGR01645 half-pint poly-U bin 99.8 1.6E-20 3.4E-25 192.6 12.3 148 364-537 107-263 (612)
35 KOG0120 Splicing factor U2AF, 99.8 8.6E-20 1.9E-24 180.2 16.9 189 242-442 287-490 (500)
36 KOG0146 RNA-binding protein ET 99.8 2E-20 4.3E-25 164.7 10.6 81 365-445 286-366 (371)
37 KOG0110 RNA-binding protein (R 99.8 1.8E-20 4E-25 186.9 10.4 173 245-444 516-693 (725)
38 KOG0144 RNA-binding protein CU 99.8 1.7E-19 3.8E-24 169.4 9.6 137 365-537 35-182 (510)
39 KOG4206 Spliceosomal protein s 99.8 2.8E-18 6E-23 149.6 16.1 185 244-442 9-220 (221)
40 KOG0124 Polypyrimidine tract-b 99.8 7.1E-19 1.5E-23 161.5 10.3 143 365-533 114-265 (544)
41 KOG4205 RNA-binding protein mu 99.8 3.2E-19 7E-24 168.2 7.4 174 243-446 5-178 (311)
42 KOG1190 Polypyrimidine tract-b 99.8 1.9E-17 4.1E-22 154.7 17.0 268 245-538 151-470 (492)
43 PLN03134 glycine-rich RNA-bind 99.7 1.5E-16 3.3E-21 135.6 13.2 85 362-446 32-116 (144)
44 KOG0105 Alternative splicing f 99.7 3.8E-16 8.2E-21 130.4 14.6 173 242-440 4-186 (241)
45 KOG0131 Splicing factor 3b, su 99.7 5.1E-17 1.1E-21 135.7 7.7 137 364-536 9-155 (203)
46 KOG1190 Polypyrimidine tract-b 99.7 8.7E-15 1.9E-19 137.1 19.5 183 244-442 297-489 (492)
47 KOG1457 RNA binding protein (c 99.6 4.5E-15 9.8E-20 127.9 13.5 179 240-431 30-273 (284)
48 KOG0109 RNA-binding protein LA 99.6 8.4E-16 1.8E-20 137.7 8.8 124 366-536 4-128 (346)
49 KOG4211 Splicing factor hnRNP- 99.6 3.4E-15 7.4E-20 143.7 13.5 168 244-441 10-179 (510)
50 KOG1548 Transcription elongati 99.6 1.1E-14 2.3E-19 133.9 16.2 195 244-444 134-352 (382)
51 KOG0106 Alternative splicing f 99.6 3.1E-15 6.7E-20 132.3 8.4 165 245-440 2-167 (216)
52 KOG1548 Transcription elongati 99.6 1.8E-14 4E-19 132.4 13.5 170 365-535 135-329 (382)
53 PF00076 RRM_1: RNA recognitio 99.6 1.9E-14 4E-19 107.8 9.0 70 367-437 1-70 (70)
54 PLN03134 glycine-rich RNA-bind 99.5 1.1E-14 2.5E-19 124.1 7.7 84 241-330 31-115 (144)
55 KOG4212 RNA-binding protein hn 99.5 7.1E-14 1.5E-18 131.9 13.6 190 243-440 43-290 (608)
56 KOG0122 Translation initiation 99.5 4.3E-14 9.2E-19 124.0 9.3 82 363-444 188-269 (270)
57 KOG4207 Predicted splicing fac 99.5 4.1E-14 8.9E-19 120.6 7.8 84 362-445 11-94 (256)
58 KOG4206 Spliceosomal protein s 99.5 7.9E-14 1.7E-18 121.9 9.0 163 365-537 10-200 (221)
59 PF14259 RRM_6: RNA recognitio 99.5 1.7E-13 3.6E-18 102.5 8.4 70 367-437 1-70 (70)
60 KOG0113 U1 small nuclear ribon 99.5 2.4E-13 5.1E-18 122.7 10.4 82 361-442 98-179 (335)
61 KOG0121 Nuclear cap-binding pr 99.5 1.4E-13 3.1E-18 108.1 7.8 79 363-441 35-113 (153)
62 KOG0126 Predicted RNA-binding 99.5 9.3E-15 2E-19 122.0 1.2 78 365-442 36-113 (219)
63 KOG0125 Ataxin 2-binding prote 99.5 3.2E-13 7E-18 123.4 10.5 85 359-445 91-175 (376)
64 KOG0114 Predicted RNA-binding 99.5 8.6E-13 1.9E-17 99.7 10.7 78 362-442 16-93 (124)
65 KOG0130 RNA-binding protein RB 99.4 1.4E-13 3.1E-18 109.0 6.4 81 366-446 74-154 (170)
66 KOG0107 Alternative splicing f 99.4 3.6E-13 7.9E-18 112.1 8.0 77 364-445 10-86 (195)
67 KOG4205 RNA-binding protein mu 99.4 3.5E-13 7.5E-18 127.6 8.9 146 364-541 6-160 (311)
68 PLN03120 nucleic acid binding 99.4 9.5E-13 2.1E-17 119.8 10.8 75 365-443 5-79 (260)
69 PLN03213 repressor of silencin 99.4 2.1E-12 4.6E-17 123.9 11.3 76 365-444 11-88 (759)
70 KOG1456 Heterogeneous nuclear 99.4 1.6E-11 3.5E-16 114.0 16.6 268 243-536 119-463 (494)
71 KOG1365 RNA-binding protein Fu 99.4 1.8E-12 3.9E-17 120.6 8.5 248 244-535 60-339 (508)
72 PF00076 RRM_1: RNA recognitio 99.3 9.1E-13 2E-17 98.6 4.6 69 247-322 1-70 (70)
73 smart00362 RRM_2 RNA recogniti 99.3 6.6E-12 1.4E-16 94.1 9.4 72 366-439 1-72 (72)
74 COG0724 RNA-binding proteins ( 99.3 6.1E-12 1.3E-16 122.5 11.4 168 244-423 115-284 (306)
75 KOG0121 Nuclear cap-binding pr 99.3 1.6E-12 3.4E-17 102.3 5.6 86 238-329 30-116 (153)
76 KOG0111 Cyclophilin-type pepti 99.3 8.9E-13 1.9E-17 113.5 4.4 82 365-446 11-92 (298)
77 KOG4212 RNA-binding protein hn 99.3 3.5E-11 7.6E-16 114.0 15.0 72 365-441 537-608 (608)
78 KOG0149 Predicted RNA-binding 99.3 2.8E-12 6.1E-17 112.4 7.0 78 365-443 13-90 (247)
79 PLN03121 nucleic acid binding 99.3 1E-11 2.2E-16 111.1 10.3 74 365-442 6-79 (243)
80 smart00360 RRM RNA recognition 99.3 8.2E-12 1.8E-16 93.3 8.3 71 369-439 1-71 (71)
81 PLN03120 nucleic acid binding 99.3 6.3E-12 1.4E-16 114.5 8.7 78 244-330 4-81 (260)
82 KOG0130 RNA-binding protein RB 99.3 1.4E-12 3E-17 103.5 3.8 83 240-328 68-151 (170)
83 KOG1365 RNA-binding protein Fu 99.3 2E-12 4.4E-17 120.3 5.1 191 247-441 164-359 (508)
84 PF13893 RRM_5: RNA recognitio 99.3 1.3E-11 2.7E-16 87.5 7.6 56 381-441 1-56 (56)
85 KOG0105 Alternative splicing f 99.3 3E-11 6.4E-16 101.4 10.9 156 364-533 6-163 (241)
86 KOG0122 Translation initiation 99.3 1.7E-11 3.7E-16 107.8 8.6 80 243-328 188-268 (270)
87 KOG0149 Predicted RNA-binding 99.3 4.8E-12 1E-16 111.0 5.2 78 244-327 12-89 (247)
88 smart00361 RRM_1 RNA recogniti 99.3 2.5E-11 5.4E-16 90.2 8.1 61 378-438 2-69 (70)
89 cd00590 RRM RRM (RNA recogniti 99.2 5.7E-11 1.2E-15 89.5 9.9 74 366-440 1-74 (74)
90 KOG1456 Heterogeneous nuclear 99.2 6.9E-11 1.5E-15 109.9 12.2 162 245-445 32-200 (494)
91 KOG0125 Ataxin 2-binding prote 99.2 2.9E-11 6.3E-16 110.7 9.6 79 241-329 93-174 (376)
92 PLN03121 nucleic acid binding 99.2 1.3E-11 2.9E-16 110.4 7.3 79 244-331 5-83 (243)
93 KOG0108 mRNA cleavage and poly 99.2 2E-11 4.2E-16 121.0 8.4 79 365-443 19-97 (435)
94 KOG0129 Predicted RNA-binding 99.2 1.5E-10 3.3E-15 112.9 12.4 173 241-425 256-432 (520)
95 KOG0107 Alternative splicing f 99.2 3E-11 6.5E-16 100.9 6.4 72 244-327 10-83 (195)
96 KOG0132 RNA polymerase II C-te 99.2 1.2E-10 2.6E-15 118.2 11.3 76 242-329 419-495 (894)
97 KOG4211 Splicing factor hnRNP- 99.2 6.6E-11 1.4E-15 114.5 8.9 145 364-538 10-163 (510)
98 KOG0126 Predicted RNA-binding 99.2 1.3E-12 2.8E-17 109.4 -2.9 84 241-330 32-116 (219)
99 PF14259 RRM_6: RNA recognitio 99.2 1.1E-11 2.5E-16 92.5 2.3 69 247-322 1-70 (70)
100 COG0724 RNA-binding proteins ( 99.2 1.4E-10 2.9E-15 113.0 10.1 80 364-443 115-194 (306)
101 KOG4207 Predicted splicing fac 99.1 5.7E-11 1.2E-15 101.7 5.3 78 244-327 13-91 (256)
102 PLN03213 repressor of silencin 99.1 7.8E-11 1.7E-15 113.3 6.0 74 244-327 10-86 (759)
103 KOG0111 Cyclophilin-type pepti 99.1 3E-11 6.5E-16 104.2 2.7 81 242-328 8-89 (298)
104 KOG0113 U1 small nuclear ribon 99.1 1.5E-10 3.3E-15 104.8 7.0 78 242-325 99-177 (335)
105 smart00362 RRM_2 RNA recogniti 99.1 2.8E-10 6.1E-15 85.1 6.5 71 246-324 1-72 (72)
106 KOG0226 RNA-binding proteins [ 99.1 4.2E-10 9E-15 99.7 8.3 136 283-441 131-267 (290)
107 KOG0114 Predicted RNA-binding 99.1 4.5E-10 9.8E-15 85.1 7.2 74 243-328 17-94 (124)
108 KOG4454 RNA binding protein (R 99.1 9.8E-12 2.1E-16 107.3 -2.3 144 242-436 7-155 (267)
109 KOG4307 RNA binding protein RB 99.1 2.5E-09 5.3E-14 107.3 13.8 197 242-446 309-516 (944)
110 KOG0108 mRNA cleavage and poly 99.0 1.3E-10 2.9E-15 115.1 4.7 80 245-330 19-99 (435)
111 KOG0415 Predicted peptidyl pro 99.0 3.7E-10 7.9E-15 104.4 6.6 81 362-442 237-317 (479)
112 KOG4208 Nucleolar RNA-binding 99.0 8.4E-10 1.8E-14 95.1 7.8 80 365-444 50-130 (214)
113 KOG0106 Alternative splicing f 99.0 8.1E-10 1.8E-14 98.2 7.3 143 366-537 3-150 (216)
114 smart00360 RRM RNA recognition 99.0 7.8E-10 1.7E-14 82.3 5.7 70 249-324 1-71 (71)
115 KOG0128 RNA-binding protein SA 99.0 9.1E-11 2E-15 120.6 -0.4 155 239-445 662-816 (881)
116 cd00590 RRM RRM (RNA recogniti 98.9 2.1E-09 4.6E-14 80.7 6.7 72 246-324 1-73 (74)
117 KOG0146 RNA-binding protein ET 98.9 9.1E-10 2E-14 98.0 4.1 80 240-325 281-361 (371)
118 KOG4210 Nuclear localization s 98.9 1.1E-09 2.3E-14 104.0 4.8 176 243-444 87-264 (285)
119 KOG0112 Large RNA-binding prot 98.9 7.8E-10 1.7E-14 114.3 4.0 166 239-448 367-535 (975)
120 KOG0132 RNA polymerase II C-te 98.8 6.5E-09 1.4E-13 105.9 7.9 76 365-446 422-497 (894)
121 KOG4660 Protein Mei2, essentia 98.8 8.5E-09 1.8E-13 101.8 8.1 179 239-443 70-249 (549)
122 KOG1457 RNA binding protein (c 98.8 1.8E-08 3.8E-13 87.7 7.9 81 364-444 34-118 (284)
123 PF13893 RRM_5: RNA recognitio 98.8 1.1E-08 2.3E-13 72.4 5.2 53 261-325 1-55 (56)
124 KOG0153 Predicted RNA-binding 98.8 2.7E-08 5.8E-13 92.5 9.0 74 364-443 228-302 (377)
125 KOG4676 Splicing factor, argin 98.7 1E-08 2.2E-13 96.4 5.2 179 246-432 9-214 (479)
126 smart00361 RRM_1 RNA recogniti 98.7 1.3E-08 2.9E-13 75.5 4.6 61 258-323 2-69 (70)
127 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.1E-08 8.8E-13 96.5 7.8 83 241-329 402-485 (940)
128 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.4E-07 3E-12 92.9 10.5 82 363-444 404-485 (940)
129 KOG0533 RRM motif-containing p 98.6 1.5E-07 3.1E-12 86.0 9.4 83 363-446 82-164 (243)
130 KOG0415 Predicted peptidyl pro 98.6 3.4E-08 7.3E-13 91.7 4.5 82 243-330 238-320 (479)
131 KOG0153 Predicted RNA-binding 98.6 9.7E-08 2.1E-12 88.8 6.7 76 241-328 225-302 (377)
132 KOG0128 RNA-binding protein SA 98.6 4.7E-09 1E-13 108.3 -2.5 215 242-536 569-793 (881)
133 KOG0151 Predicted splicing reg 98.5 3.1E-07 6.6E-12 93.0 9.2 83 363-445 173-258 (877)
134 PF04059 RRM_2: RNA recognitio 98.5 1.2E-06 2.6E-11 68.1 9.4 78 365-442 2-85 (97)
135 KOG4208 Nucleolar RNA-binding 98.5 1.1E-07 2.5E-12 82.2 3.9 75 245-325 50-126 (214)
136 KOG4454 RNA binding protein (R 98.4 1.1E-07 2.4E-12 82.6 2.3 76 365-442 10-85 (267)
137 KOG4307 RNA binding protein RB 98.4 9.8E-06 2.1E-10 82.1 16.3 76 365-440 868-943 (944)
138 KOG4209 Splicing factor RNPS1, 98.4 3.3E-07 7.1E-12 84.1 5.6 78 364-442 101-178 (231)
139 KOG4660 Protein Mei2, essentia 98.4 2.3E-07 4.9E-12 91.9 4.7 68 365-437 76-143 (549)
140 PF11608 Limkain-b1: Limkain b 98.3 3.2E-06 7E-11 62.2 7.1 69 366-444 4-77 (90)
141 KOG0116 RasGAP SH3 binding pro 98.3 1.8E-06 3.9E-11 85.6 7.1 77 365-442 289-365 (419)
142 KOG0533 RRM motif-containing p 98.3 7.3E-06 1.6E-10 75.0 10.4 78 244-328 83-161 (243)
143 KOG2193 IGF-II mRNA-binding pr 98.2 9.8E-08 2.1E-12 90.7 -2.1 151 245-441 2-154 (584)
144 KOG0112 Large RNA-binding prot 98.2 4.4E-07 9.6E-12 94.5 2.4 134 364-537 372-508 (975)
145 KOG0151 Predicted splicing reg 98.2 4E-06 8.7E-11 85.1 7.1 78 244-328 174-256 (877)
146 KOG0116 RasGAP SH3 binding pro 98.2 4.8E-06 1E-10 82.6 7.6 78 242-325 286-363 (419)
147 KOG1996 mRNA splicing factor [ 98.0 1.2E-05 2.6E-10 73.2 6.8 77 366-442 283-365 (378)
148 PF08777 RRM_3: RNA binding mo 98.0 9.6E-06 2.1E-10 64.9 5.0 71 365-441 2-77 (105)
149 KOG4209 Splicing factor RNPS1, 98.0 4.6E-06 1E-10 76.6 2.9 83 239-327 96-178 (231)
150 KOG0226 RNA-binding proteins [ 97.9 1.2E-05 2.5E-10 72.0 4.7 77 243-325 189-266 (290)
151 PF04059 RRM_2: RNA recognitio 97.9 3.2E-05 7E-10 60.2 6.3 79 245-327 2-85 (97)
152 KOG1995 Conserved Zn-finger pr 97.9 9.1E-06 2E-10 76.7 3.9 81 365-445 67-155 (351)
153 PF11608 Limkain-b1: Limkain b 97.8 0.00018 3.8E-09 53.2 8.4 70 246-326 4-74 (90)
154 KOG2202 U2 snRNP splicing fact 97.6 3.7E-05 8.1E-10 69.3 2.5 65 379-444 83-148 (260)
155 COG5175 MOT2 Transcriptional r 97.6 0.00013 2.9E-09 67.8 6.1 80 366-445 116-204 (480)
156 KOG1995 Conserved Zn-finger pr 97.6 0.00019 4.1E-09 68.0 7.0 88 242-329 64-154 (351)
157 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00056 1.2E-08 53.7 8.1 75 365-441 7-89 (100)
158 KOG4849 mRNA cleavage factor I 97.5 0.00018 4E-09 67.2 6.0 79 365-443 81-161 (498)
159 KOG0129 Predicted RNA-binding 97.5 0.00029 6.4E-09 69.8 7.2 157 364-540 259-437 (520)
160 KOG2314 Translation initiation 97.4 0.00056 1.2E-08 68.2 8.7 75 365-440 59-140 (698)
161 KOG4210 Nuclear localization s 97.4 6.2E-05 1.4E-09 71.7 2.0 149 364-538 88-245 (285)
162 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00042 9.2E-09 47.7 5.3 52 365-423 2-53 (53)
163 KOG0115 RNA-binding protein p5 97.4 0.00041 8.8E-09 62.5 6.1 101 304-441 6-111 (275)
164 KOG1996 mRNA splicing factor [ 97.3 9.2E-05 2E-09 67.6 1.5 60 475-539 279-348 (378)
165 KOG1855 Predicted RNA-binding 97.2 0.0003 6.4E-09 67.9 3.6 68 363-430 230-310 (484)
166 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0011 2.4E-08 45.6 5.1 52 245-309 2-53 (53)
167 KOG3152 TBP-binding protein, a 97.1 0.00034 7.4E-09 62.9 3.2 70 366-435 76-157 (278)
168 KOG2416 Acinus (induces apopto 97.0 0.0008 1.7E-08 67.6 5.1 77 361-443 441-521 (718)
169 KOG1855 Predicted RNA-binding 96.9 0.00033 7.2E-09 67.6 1.3 72 242-313 229-308 (484)
170 PF08777 RRM_3: RNA binding mo 96.9 0.002 4.3E-08 51.6 5.2 68 245-324 2-75 (105)
171 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0058 1.3E-07 48.1 6.3 81 244-325 6-88 (100)
172 COG5175 MOT2 Transcriptional r 96.5 0.0029 6.2E-08 59.2 4.4 74 246-327 116-201 (480)
173 PF08952 DUF1866: Domain of un 96.4 0.015 3.3E-07 48.6 7.4 59 379-446 51-109 (146)
174 PF08675 RNA_bind: RNA binding 96.0 0.028 6E-07 41.8 6.4 53 366-427 11-63 (87)
175 KOG3152 TBP-binding protein, a 96.0 0.0039 8.5E-08 56.3 2.0 78 243-320 73-157 (278)
176 KOG4849 mRNA cleavage factor I 95.9 0.013 2.8E-07 55.2 5.1 75 244-324 80-157 (498)
177 KOG2193 IGF-II mRNA-binding pr 95.9 0.011 2.3E-07 57.3 4.5 74 366-445 3-77 (584)
178 PF10309 DUF2414: Protein of u 95.8 0.056 1.2E-06 38.1 6.9 54 365-426 6-62 (62)
179 KOG2591 c-Mpl binding protein, 95.8 0.098 2.1E-06 52.8 11.1 69 365-440 176-248 (684)
180 KOG0670 U4/U6-associated splic 95.7 0.027 5.9E-07 56.7 6.9 26 366-396 510-535 (752)
181 KOG2253 U1 snRNP complex, subu 95.7 0.0089 1.9E-07 61.4 3.6 67 244-325 40-107 (668)
182 KOG2548 SWAP mRNA splicing reg 95.6 0.041 8.8E-07 54.9 7.6 19 250-268 555-573 (653)
183 KOG2068 MOT2 transcription fac 95.4 0.013 2.8E-07 55.5 3.2 81 366-446 79-165 (327)
184 KOG2416 Acinus (induces apopto 95.3 0.012 2.7E-07 59.4 3.0 75 242-327 442-520 (718)
185 KOG2202 U2 snRNP splicing fact 95.0 0.02 4.2E-07 52.1 3.0 62 259-327 83-146 (260)
186 KOG4285 Mitotic phosphoprotein 94.9 0.23 4.9E-06 46.4 9.6 71 366-444 199-270 (350)
187 KOG4574 RNA-binding protein (c 94.6 0.032 7E-07 58.9 3.9 75 366-446 300-376 (1007)
188 PF04847 Calcipressin: Calcipr 94.6 0.11 2.3E-06 46.2 6.7 62 377-444 8-71 (184)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 94.3 0.045 9.8E-07 48.4 3.7 79 365-443 8-97 (176)
190 PF07576 BRAP2: BRCA1-associat 94.1 0.53 1.1E-05 37.9 9.0 65 366-432 15-80 (110)
191 PF15023 DUF4523: Protein of u 94.0 0.21 4.4E-06 41.3 6.5 69 365-441 87-159 (166)
192 PF08952 DUF1866: Domain of un 93.5 0.13 2.9E-06 43.1 4.7 33 293-325 71-103 (146)
193 KOG4285 Mitotic phosphoprotein 93.5 0.24 5.3E-06 46.2 6.8 71 246-329 199-270 (350)
194 KOG2314 Translation initiation 92.9 0.1 2.2E-06 52.7 3.8 74 244-324 58-139 (698)
195 KOG0670 U4/U6-associated splic 92.5 0.2 4.4E-06 50.7 5.1 6 293-298 420-425 (752)
196 KOG0115 RNA-binding protein p5 92.3 0.5 1.1E-05 43.2 6.9 58 245-309 32-89 (275)
197 KOG4246 Predicted DNA-binding 91.7 0.2 4.4E-06 52.9 4.3 8 522-529 971-978 (1194)
198 KOG2135 Proteins containing th 91.5 0.085 1.9E-06 52.2 1.3 75 242-328 370-445 (526)
199 KOG2253 U1 snRNP complex, subu 91.4 0.28 6.1E-06 50.9 4.9 70 362-440 38-107 (668)
200 KOG2135 Proteins containing th 91.4 0.16 3.6E-06 50.3 3.1 73 366-445 374-447 (526)
201 PF11767 SET_assoc: Histone ly 91.0 1.2 2.7E-05 32.0 6.5 55 375-438 11-65 (66)
202 KOG0804 Cytoplasmic Zn-finger 90.7 0.98 2.1E-05 44.8 7.6 68 364-433 74-142 (493)
203 KOG2548 SWAP mRNA splicing reg 90.4 0.15 3.2E-06 51.1 1.8 9 1-9 325-333 (653)
204 PF15023 DUF4523: Protein of u 90.2 0.85 1.8E-05 37.8 5.7 70 243-326 85-159 (166)
205 PF10309 DUF2414: Protein of u 90.2 1.4 3E-05 31.2 6.0 56 245-311 6-62 (62)
206 PF07292 NID: Nmi/IFP 35 domai 89.5 0.22 4.7E-06 38.1 1.7 70 295-386 1-74 (88)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 87.4 0.23 5E-06 43.9 0.8 69 243-318 6-82 (176)
208 PF10567 Nab6_mRNP_bdg: RNA-re 87.2 2.7 5.8E-05 39.5 7.5 79 365-443 16-107 (309)
209 PF03880 DbpA: DbpA RNA bindin 86.9 3.5 7.6E-05 30.5 6.8 59 374-441 11-74 (74)
210 KOG2891 Surface glycoprotein [ 86.6 1 2.2E-05 41.5 4.3 81 362-442 147-266 (445)
211 KOG2318 Uncharacterized conser 86.2 4.7 0.0001 41.5 9.1 81 361-441 171-305 (650)
212 PF08675 RNA_bind: RNA binding 85.6 1.3 2.8E-05 33.2 3.7 54 244-312 9-63 (87)
213 PF06495 Transformer: Fruit fl 84.6 4.2 9.2E-05 34.9 6.8 15 179-193 117-131 (182)
214 KOG4574 RNA-binding protein (c 83.7 1.6 3.4E-05 46.9 4.7 70 246-327 300-372 (1007)
215 PF07576 BRAP2: BRCA1-associat 83.1 4.7 0.0001 32.5 6.3 64 246-317 14-80 (110)
216 PF04847 Calcipressin: Calcipr 82.0 2.6 5.6E-05 37.5 4.9 57 258-326 9-68 (184)
217 PF11767 SET_assoc: Histone ly 81.4 5.4 0.00012 28.7 5.4 54 255-323 11-65 (66)
218 KOG0804 Cytoplasmic Zn-finger 78.6 8.3 0.00018 38.6 7.4 67 244-318 74-142 (493)
219 KOG1924 RhoA GTPase effector D 77.8 3.6 7.9E-05 43.9 5.0 7 251-257 609-615 (1102)
220 KOG2591 c-Mpl binding protein, 76.6 2.7 5.8E-05 42.9 3.5 70 243-323 174-246 (684)
221 KOG4019 Calcineurin-mediated s 76.1 4 8.7E-05 35.5 4.0 75 365-445 11-91 (193)
222 KOG2068 MOT2 transcription fac 75.3 0.65 1.4E-05 44.4 -1.0 78 246-327 79-161 (327)
223 KOG4483 Uncharacterized conser 70.5 17 0.00036 35.8 7.1 57 362-425 389-446 (528)
224 PF14111 DUF4283: Domain of un 68.4 3.9 8.5E-05 35.1 2.4 86 291-399 54-140 (153)
225 PF03880 DbpA: DbpA RNA bindin 68.0 8.9 0.00019 28.3 3.9 62 254-325 11-73 (74)
226 KOG4410 5-formyltetrahydrofola 67.6 22 0.00047 33.3 6.9 47 246-303 332-378 (396)
227 KOG1882 Transcriptional regula 66.9 11 0.00023 34.4 4.7 31 273-303 194-227 (293)
228 PF15519 RBM39linker: linker b 65.0 3.7 8E-05 30.3 1.3 22 474-495 51-72 (73)
229 PF10567 Nab6_mRNP_bdg: RNA-re 57.5 73 0.0016 30.3 8.5 180 243-427 14-212 (309)
230 KOG4410 5-formyltetrahydrofola 54.6 83 0.0018 29.6 8.2 47 365-417 331-378 (396)
231 PF15513 DUF4651: Domain of un 53.9 27 0.00057 24.7 3.9 21 497-517 4-24 (62)
232 PF07530 PRE_C2HC: Associated 52.9 35 0.00075 24.8 4.6 62 379-443 2-64 (68)
233 KOG2318 Uncharacterized conser 52.0 61 0.0013 33.8 7.6 77 241-325 171-304 (650)
234 COG5638 Uncharacterized conser 48.3 66 0.0014 31.9 6.9 36 407-442 259-296 (622)
235 KOG4483 Uncharacterized conser 48.1 42 0.00091 33.1 5.6 57 243-311 390-446 (528)
236 smart00596 PRE_C2HC PRE_C2HC d 47.1 36 0.00078 24.7 3.7 62 379-443 2-64 (69)
237 COG5470 Uncharacterized conser 44.6 31 0.00067 26.7 3.3 45 490-534 11-67 (96)
238 PF03468 XS: XS domain; Inter 44.3 54 0.0012 26.7 5.0 50 366-418 10-68 (116)
239 KOG2295 C2H2 Zn-finger protein 39.8 4.5 9.7E-05 41.4 -2.3 73 364-436 231-303 (648)
240 KOG4019 Calcineurin-mediated s 39.3 2.6E+02 0.0056 24.7 8.4 75 246-329 12-90 (193)
241 KOG1295 Nonsense-mediated deca 38.7 36 0.00077 33.6 3.6 66 365-431 8-77 (376)
242 PRK14548 50S ribosomal protein 36.9 1.5E+02 0.0032 22.6 5.9 56 368-426 24-81 (84)
243 KOG1882 Transcriptional regula 34.1 52 0.0011 30.2 3.6 8 316-323 197-204 (293)
244 KOG4365 Uncharacterized conser 33.5 6.9 0.00015 38.8 -2.0 75 366-441 5-79 (572)
245 TIGR03636 L23_arch archaeal ri 33.4 1.9E+02 0.0042 21.6 6.0 57 367-426 16-74 (77)
246 KOG3430 Dynein light chain typ 32.8 1.3E+02 0.0028 23.0 5.0 33 497-529 36-71 (90)
247 PF03439 Spt5-NGN: Early trans 30.5 75 0.0016 24.1 3.6 36 390-430 33-68 (84)
248 KOG2812 Uncharacterized conser 29.9 1.9E+02 0.0042 28.3 6.8 16 408-423 363-378 (426)
249 KOG0334 RNA helicase [RNA proc 28.1 27 0.00059 39.1 1.1 21 373-393 446-466 (997)
250 PLN03058 dynein light chain ty 25.9 2.3E+02 0.0049 23.6 5.8 31 498-528 69-102 (128)
251 KOG1295 Nonsense-mediated deca 24.7 45 0.00097 32.9 1.7 63 244-317 7-78 (376)
252 KOG4008 rRNA processing protei 22.9 85 0.0018 28.8 3.0 32 365-396 41-72 (261)
253 PF14893 PNMA: PNMA 21.9 81 0.0018 31.1 2.9 25 244-268 18-42 (331)
254 KOG4213 RNA-binding protein La 21.8 74 0.0016 27.8 2.3 36 498-535 120-165 (205)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.1e-52 Score=442.17 Aligned_cols=303 Identities=48% Similarity=0.669 Sum_probs=236.2
Q ss_pred ccHHhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCce
Q 009076 236 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII 315 (544)
Q Consensus 236 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~ 315 (544)
..++.....++|||+|||+.+|+++|.+||..++...+.....++.+|..+.++..+|||||+|.+.++|..||+|+|+.
T Consensus 167 ~~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 167 YQQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred cCccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 34566778899999999999999999999999988777665566778999999999999999999999999999999999
Q ss_pred eCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEE
Q 009076 316 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFD 395 (544)
Q Consensus 316 l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~ 395 (544)
|.|+.|+|.++..+.+............+.....................+|||+|||..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 99999999988877643322211111111111111111112222334567999999999999999999999999999999
Q ss_pred EccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHH-HHHHHHHHHHHHHhhcCCCC
Q 009076 396 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES-VLLHAQQQIALQRLMLQPGS 474 (544)
Q Consensus 396 i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 474 (544)
|+.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++............. ..........+.........
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 99998899999999999999999999999999999999999999986554332221111 00000011111111223345
Q ss_pred CCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------------ccCceEEEEecCCCCCCCceE
Q 009076 475 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------------FCYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 475 ~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------------~~~g~a~V~f~~~~~A~a~~~ 538 (544)
.++.|++|.|+++.++|.++++|++|+++|+++|++||.|+.| .+.|+|||+|.++++|++|+.
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999998 136899999999999977753
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.6e-43 Score=365.63 Aligned_cols=275 Identities=23% Similarity=0.354 Sum_probs=212.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
...++|||+|||..+++++|.++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+||.|+|..|.|++|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~------i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i 160 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQ------CIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPI 160 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeee
Confidence 4467899999999999999999999999887665 4555567889999999999999999999999999999999
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 401 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~ 401 (544)
.|.++............. .........+|||+|||..+++++|+++|++||.|..|.|+.+..
T Consensus 161 ~v~~~~~~~~~~~~~~~~-----------------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~ 223 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATH-----------------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE 223 (457)
T ss_pred EEeecchhhhhhhhcccc-----------------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 998653322111000000 000011256899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCCh-------------------hhHHHHHHHH--
Q 009076 402 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP-------------------EQESVLLHAQ-- 460 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~-------------------~~~~~~~~~~-- 460 (544)
+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+......... .....+....
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDR 303 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhcc
Confidence 8999999999999999999999999999999999999997532211000 0000000000
Q ss_pred --------------HHHHHHHh----------------------------hcCCCCCCcceeEecCCCCcccCCChHHHH
Q 009076 461 --------------QQIALQRL----------------------------MLQPGSVPSKVVCLTQVVSADELKDDEEYE 498 (544)
Q Consensus 461 --------------~~~~~~~~----------------------------~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~ 498 (544)
....+..+ .......++.|++|.||+++.++.++.+|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~ 383 (457)
T TIGR01622 304 DDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDN 383 (457)
T ss_pred CCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHH
Confidence 00000000 000133688999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCceee-----ccCceEEEEecCCCCCCCceEE
Q 009076 499 EILEDMRQEGGKFAFCSPT-----FCYKESGLIYTDRRLHNPQFVY 539 (544)
Q Consensus 499 ~~~~~l~~~f~~fG~V~~i-----~~~g~a~V~f~~~~~A~a~~~~ 539 (544)
+|.++|+++|++||.|+.| ...|+|||+|.+.++|.+++..
T Consensus 384 ~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~ 429 (457)
T TIGR01622 384 EILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQA 429 (457)
T ss_pred HHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHH
Confidence 9999999999999999998 5689999999999999776543
No 3
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=1.1e-38 Score=307.68 Aligned_cols=275 Identities=23% Similarity=0.333 Sum_probs=213.2
Q ss_pred hhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 240 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
..+..++||+..|+..+++.+|.+||+.+|+|..+. +|.+.....++|.|||+|.+.+....|+.|.|+.+.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVr------iI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~ 248 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVR------IIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGV 248 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeE------eeccccchhhcceeEEEEecccchhhHhhhcCCcccCc
Confidence 466788999999999999999999999999987665 56677788899999999999999999999999999999
Q ss_pred eeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCC-EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEcc
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPD-RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~ 398 (544)
+|.|+........ ++...+.. .......+. .|+|+||..++++++|+.+|++||.|..|.+..
T Consensus 249 pv~vq~sEaeknr-~a~~s~a~---------------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~ 312 (549)
T KOG0147|consen 249 PVIVQLSEAEKNR-AANASPAL---------------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTK 312 (549)
T ss_pred eeEecccHHHHHH-HHhccccc---------------cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecc
Confidence 9999864321111 11000000 001111222 399999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCCh--------------------hhHHHHHH
Q 009076 399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP--------------------EQESVLLH 458 (544)
Q Consensus 399 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~--------------------~~~~~~~~ 458 (544)
+..+|.++||+||+|.+.++|.+|+..|||+.|.|+.|+|...+.....+.. ...+....
T Consensus 313 d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~k 392 (549)
T KOG0147|consen 313 DSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAK 392 (549)
T ss_pred ccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHH
Confidence 9889999999999999999999999999999999999999876554432211 00000000
Q ss_pred HHH----------HHHHH---H-----hh-------cCCCC-------CCcceeEecCCCCcccCCChHHHHHHHHHHHH
Q 009076 459 AQQ----------QIALQ---R-----LM-------LQPGS-------VPSKVVCLTQVVSADELKDDEEYEEILEDMRQ 506 (544)
Q Consensus 459 ~~~----------~~~~~---~-----~~-------~~~~~-------~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~ 506 (544)
..+ ...+. . .. ..... +++.|+.|.||+++.+.+++.|-.+|.++|++
T Consensus 393 la~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~E 472 (549)
T KOG0147|consen 393 LAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIE 472 (549)
T ss_pred HhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHH
Confidence 000 00000 0 00 01122 78999999999999999999999999999999
Q ss_pred HHhhcCCceee----ccCceEEEEecCCCCCCCc
Q 009076 507 EGGKFAFCSPT----FCYKESGLIYTDRRLHNPQ 536 (544)
Q Consensus 507 ~f~~fG~V~~i----~~~g~a~V~f~~~~~A~a~ 536 (544)
+|++||+|.+| ...|++||.|.+++.|.++
T Consensus 473 ec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a 506 (549)
T KOG0147|consen 473 ECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTA 506 (549)
T ss_pred HHHhcCCeeEEEEccCCCceEEEecCcHHHHHHH
Confidence 99999999999 4559999999999999443
No 4
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3e-38 Score=309.91 Aligned_cols=298 Identities=51% Similarity=0.800 Sum_probs=255.1
Q ss_pred ccccccHHhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHc
Q 009076 232 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMAL 311 (544)
Q Consensus 232 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l 311 (544)
+.+.+..+...+.+.++|+++|+.++++.+..+|..-..+.+++....+..++.+.++..++||||+|.+.+.|..|+.+
T Consensus 163 ~~~~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~ 242 (500)
T KOG0120|consen 163 PTPPMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMAL 242 (500)
T ss_pred CCCccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcc
Confidence 33445566778889999999999999999999999987777777666678899999999999999999999999999999
Q ss_pred CCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCc
Q 009076 312 DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391 (544)
Q Consensus 312 ~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i 391 (544)
++..+.|.++++..+.++.+.........+ ................++.++|++||..+++.++.++...||.+
T Consensus 243 ~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 243 DGIIFEGRPLKIRRPHDYQPVPGITLSPSQ------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred cchhhCCCCceecccccccCCccchhhhcc------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 999999999999999888876655444433 22223344455666777899999999999999999999999999
Q ss_pred eEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcC
Q 009076 392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ 471 (544)
Q Consensus 392 ~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (544)
....++.+..+|.++||||.+|.+...+..|+..|||..++++.|.|+.+......+..... ..+.+...+..+..+
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---~~~~~~~~i~~~~~q 393 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN---ISQSQVPGIPLLMTQ 393 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC---ccccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999776655544433 112245566666667
Q ss_pred CCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------------ccCceEEEEecCCCCCCCceE
Q 009076 472 PGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------------FCYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 472 ~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------------~~~g~a~V~f~~~~~A~a~~~ 538 (544)
....++.|++|.|+|++++|+++++|++|+|+|+.+|.+||.|..| .+.|++||+|.++++|+.|..
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~ 472 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAME 472 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999 689999999999999965543
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6.2e-35 Score=297.77 Aligned_cols=178 Identities=25% Similarity=0.373 Sum_probs=151.3
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+++++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|..|| .|||..|.|+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~------I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEE------EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 4678999999999999999999999999988765 4556678899999999999999999999 89999999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCC
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 400 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~ 400 (544)
|+|.++......... . ..........++|||+||++.+++++|+++|+.||.|..+.|.+++
T Consensus 179 IkV~rp~~~p~a~~~----------~--------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 179 IKVGRPSNMPQAQPI----------I--------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred eeecccccccccccc----------c--------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 999865432111000 0 0000111233589999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 401 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 401 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.+|.++|||||+|.+.++|.+|+..|||+.|+|+.|+|.++..
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 8999999999999999999999999999999999999998753
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.8e-34 Score=289.59 Aligned_cols=167 Identities=23% Similarity=0.367 Sum_probs=146.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
..+|||+|||+.+|+++|+++|+.||+|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.|.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~------i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~ 76 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCK------LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK 76 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEE------EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence 46899999999999999999999999988765 4555567889999999999999999999 8999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.++..... ....++|||+|||..+++++|+++|+.||.|..+.++.+..+
T Consensus 77 v~~a~~~~~-----------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 127 (352)
T TIGR01661 77 VSYARPSSD-----------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVT 127 (352)
T ss_pred EEeeccccc-----------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCC
Confidence 987542211 011247999999999999999999999999999999998778
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcCCCC
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGA 445 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~~~~ 445 (544)
|.++|||||+|.+.++|..|+..|||..+.| ..|.|.|+....
T Consensus 128 ~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 128 GLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 8999999999999999999999999999977 678999986443
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=6.4e-31 Score=276.91 Aligned_cols=192 Identities=18% Similarity=0.231 Sum_probs=144.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||..+|+++|.++|+.||.|..+. ++.+..++.++|||||+|.+.++|..|| .|||+.|.|+.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN------LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 457999999999999999999999999987765 4555567889999999999999999999 899999999999
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCC-CCCCCCCCCCEEEEcCCCCCC----------cHHHHHHHHHhcCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTP-GSAGGLEGPDRIFVGGLPYYF----------TEAQIRELLESFGP 390 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~~----------~ee~l~~~f~~~G~ 390 (544)
.|.++............... .+. ......... .......++.+|+|.||.... ..++|+++|++||.
T Consensus 368 ~v~~a~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 368 HVQRACVGANQATIDTSNGM-APV-TLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred EEEECccCCCCCCccccccc-ccc-ccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 99987543321111000000 000 000000000 001122355689999996421 23789999999999
Q ss_pred ceEEEEccCC---CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 391 LRGFDLVKDR---ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 391 i~~v~i~~~~---~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
|+.|.|+++. .++.+.|+|||+|.++++|++|+.+|||..|+|+.|.|.|..
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 9999998753 245567999999999999999999999999999999999984
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.98 E-value=1.1e-31 Score=285.07 Aligned_cols=226 Identities=16% Similarity=0.268 Sum_probs=183.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
+|||+|||+.+||++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .+|+..|.|+.|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~------v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVR------VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 699999999999999999999999887664 3455556889999999999999999999 899999999999998
Q ss_pred CCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCC
Q 009076 325 RPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 404 (544)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~ 404 (544)
|+...... ......+|||+|||.++++++|+++|+.||.|..|+|+.+ .+|.
T Consensus 76 ~s~~~~~~---------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~ 127 (562)
T TIGR01628 76 WSQRDPSL---------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGK 127 (562)
T ss_pred cccccccc---------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCC
Confidence 85321100 0112247999999999999999999999999999999988 4788
Q ss_pred cceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecC
Q 009076 405 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQ 484 (544)
Q Consensus 405 ~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 484 (544)
++|||||+|.+.++|.+|+..|||..+.|+.|.|.......... .........+++.|
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~----------------------~~~~~~~~~l~V~n 185 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE----------------------AAPLKKFTNLYVKN 185 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc----------------------cccccCCCeEEEeC
Confidence 99999999999999999999999999999999997763332110 00112334577777
Q ss_pred CCCcccCCChHHHHHHHHHHHHHHhhcCCceee--------ccCceEEEEecCCCCCCCce
Q 009076 485 VVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 485 ~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i--------~~~g~a~V~f~~~~~A~a~~ 537 (544)
+ +.++++ ++|+++|++||.|+.+ ..+|+|||+|.+.++|..++
T Consensus 186 l--~~~~te--------e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av 236 (562)
T TIGR01628 186 L--DPSVNE--------DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAV 236 (562)
T ss_pred C--CCcCCH--------HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 7 333333 4899999999999988 35789999999999996554
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2.4e-31 Score=271.46 Aligned_cols=221 Identities=17% Similarity=0.251 Sum_probs=176.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC-Cce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE-GAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~-g~~ 320 (544)
..++|||+|||+.+++++|.++|++||.|..+. ++.+ ..+.++|||||+|.+.++|++|| .||+..|. |+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vr------l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELR------LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEE------EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 357999999999999999999999999987764 3444 77899999999999999999999 89998885 777
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEc-c
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLV-K 398 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~-~ 398 (544)
|.|.++. ..++|||+|||..+++++|.++|++++. ++.+.+. .
T Consensus 130 l~V~~S~-----------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~ 174 (578)
T TIGR01648 130 LGVCISV-----------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS 174 (578)
T ss_pred ccccccc-----------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc
Confidence 7765321 1248999999999999999999999864 4444433 3
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHhCC--CeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 009076 399 DRETGNSKGYAFCVYQDLSVTDIACAALNG--IKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVP 476 (544)
Q Consensus 399 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (544)
....++++|||||+|.+.++|..|+..|+. ..+.|+.|.|.|+.+..... ......
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d----------------------~~~~~~ 232 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD----------------------EDVMAK 232 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc----------------------cccccc
Confidence 334567899999999999999999988863 46789999999995442110 001234
Q ss_pred cceeEecCCCCcccCCChHHHHHHHHHHHHHHhhc--CCceee-ccCceEEEEecCCCCCCCce
Q 009076 477 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF--AFCSPT-FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 477 ~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~f--G~V~~i-~~~g~a~V~f~~~~~A~a~~ 537 (544)
.++|+|.|+ +.++++ ++|+++|++| |.|+.| ...++|||+|.+.++|++++
T Consensus 233 ~k~LfVgNL--~~~~te--------e~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 233 VKILYVRNL--MTTTTE--------EIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAM 286 (578)
T ss_pred ccEEEEeCC--CCCCCH--------HHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHH
Confidence 578999988 333332 3899999999 999999 66889999999999997765
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.2e-30 Score=277.04 Aligned_cols=243 Identities=21% Similarity=0.318 Sum_probs=188.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
..+|||+|||..+++++|+++|+.||.|..|. +.....+.++|||||+|.+.++|..|+ .+||..+.|+.|.
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~-------i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCK-------VATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeE-------eeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 34799999999999999999999999988764 444456778999999999999999999 9999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.......... .......++|||+||+..+++++|+++|+.||.|..+.++.+ .+
T Consensus 161 v~~~~~~~~~~------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~ 215 (562)
T TIGR01628 161 VGRFIKKHERE------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GS 215 (562)
T ss_pred Eeccccccccc------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CC
Confidence 96533221110 001122357999999999999999999999999999999988 47
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeC----CeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMG----DKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSK 478 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (544)
|.++|||||+|.+.++|.+|+..|||..|. |+.|.|.++..+. +....+.....+..... .......
T Consensus 216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~-----er~~~~~~~~~~~~~~~----~~~~~~~ 286 (562)
T TIGR01628 216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA-----EREAELRRKFEELQQER----KMKAQGV 286 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh-----hhHHHHHhhHHhhhhhh----hcccCCC
Confidence 889999999999999999999999999999 9999999984432 22212221111111111 1123345
Q ss_pred eeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee--------ccCceEEEEecCCCCCCCce
Q 009076 479 VVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 479 ~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i--------~~~g~a~V~f~~~~~A~a~~ 537 (544)
.+++.|+ +..+++ ++|+++|++||.|+.+ ..+|+|||+|.+.++|.+++
T Consensus 287 ~l~V~nl--~~~~~~--------~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~ 343 (562)
T TIGR01628 287 NLYVKNL--DDTVTD--------EKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAV 343 (562)
T ss_pred EEEEeCC--CCccCH--------HHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHH
Confidence 5777777 333332 3899999999999988 45799999999999997765
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.9e-31 Score=246.28 Aligned_cols=223 Identities=17% Similarity=0.274 Sum_probs=184.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee-CCc
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF-EGA 319 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l-~g~ 319 (544)
...|.|||+.||.++.|++|.-||+..|+|..+. ++.+...|.++|||||.|.+.+.|+.|+ .||+..| .|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR------LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR------LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEE------EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3578899999999999999999999999998876 5666688999999999999999999999 9999987 688
Q ss_pred eeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEcc
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVK 398 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~~ 398 (544)
.|.|..+. ..++|||+|||.++++++|+++|.+.+. |++|.|..
T Consensus 155 ~igvc~Sv-----------------------------------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 155 LLGVCVSV-----------------------------------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred EeEEEEee-----------------------------------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEec
Confidence 88885321 2358999999999999999999999987 77877776
Q ss_pred CCC-CCCcceEEEEEEcChHHHHHHHHHhC--CCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCC
Q 009076 399 DRE-TGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSV 475 (544)
Q Consensus 399 ~~~-~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (544)
.+. ..+++|||||+|.+...|..|...|- .+.+-|..|.|.|+.+... ++.. ...
T Consensus 200 ~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e---~ded-------------------~ms 257 (506)
T KOG0117|consen 200 SPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE---PDED-------------------TMS 257 (506)
T ss_pred CccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccC---CChh-------------------hhh
Confidence 653 56789999999999999999987773 4568999999999955532 1111 112
Q ss_pred CcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-ccCceEEEEecCCCCCCCce
Q 009076 476 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 476 ~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-~~~g~a~V~f~~~~~A~a~~ 537 (544)
..++|++.|+ ..+. +.|.|+++|+.||.|..| ..+.+|||+|.+.++|.+|.
T Consensus 258 ~VKvLYVRNL--~~~t--------TeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 258 KVKVLYVRNL--MEST--------TEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAM 310 (506)
T ss_pred heeeeeeecc--chhh--------hHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHH
Confidence 3789999998 2222 335899999999999999 67889999999999996653
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.2e-30 Score=251.13 Aligned_cols=169 Identities=21% Similarity=0.325 Sum_probs=149.5
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
....++|||+|||+++|+++|+++|+.||+|+.+. ++.+..++.++|||||+|.+.++|..|| .|++..|.++
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~------i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCR------IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 34578999999999999999999999999987765 4566678889999999999999999999 8999999999
Q ss_pred eeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccC
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 399 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~ 399 (544)
+|+|.++..... .....+|||.|||..+++++|+++|++||.|+.|.|+.+
T Consensus 178 ~i~V~~a~p~~~-----------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d 228 (346)
T TIGR01659 178 RLKVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD 228 (346)
T ss_pred eeeeeccccccc-----------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec
Confidence 999987542110 011247999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcCCC
Q 009076 400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQG 444 (544)
Q Consensus 400 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~~~ 444 (544)
+.+|.++|||||+|.+.++|++||+.||+..|.| +.|.|.++...
T Consensus 229 ~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 229 KLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 8899999999999999999999999999999865 79999998654
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=224.98 Aligned_cols=249 Identities=20% Similarity=0.274 Sum_probs=195.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
...|+|.-||..+|+++|+.+|...|+|.+|+ +|.+..+|.+-|||||.|.++++|++|+ .|||..|..+.|+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK------LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeee------eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEE
Confidence 44699999999999999999999999999998 7889999999999999999999999999 9999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.++...... .....|||.+||..+|..+|.++|++||.|..-+|+.+..+
T Consensus 115 VSyARPSs~~-----------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvt 165 (360)
T KOG0145|consen 115 VSYARPSSDS-----------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVT 165 (360)
T ss_pred EEeccCChhh-----------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 9986533221 11237999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcCCCCCCCChhhHHHHHH-----------HH-HHHHH---
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGANQPKPEQESVLLH-----------AQ-QQIAL--- 465 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~--- 465 (544)
|.++|++||.|+...+|..||..|||..-.| .+|.|.|++-............+.. .+ +-..+
T Consensus 166 g~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~ 245 (360)
T KOG0145|consen 166 GLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNL 245 (360)
T ss_pred ceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccc
Confidence 9999999999999999999999999998866 5799999965532211110000000 00 00000
Q ss_pred ------H---------------HhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-------
Q 009076 466 ------Q---------------RLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 517 (544)
Q Consensus 466 ------~---------------~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------- 517 (544)
. .+..+......+|+++.|+-.+.+ + ..|-.+|..||.|+.|
T Consensus 246 ~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~d---e-------~~LWQlFgpFGAv~nVKvirD~t 315 (360)
T KOG0145|consen 246 LNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDAD---E-------SILWQLFGPFGAVTNVKVIRDFT 315 (360)
T ss_pred cchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCch---H-------hHHHHHhCcccceeeEEEEecCC
Confidence 0 001122345678899988843332 1 2577899999999888
Q ss_pred --ccCceEEEEecCCCCCCCce
Q 009076 518 --FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 --~~~g~a~V~f~~~~~A~a~~ 537 (544)
.++|++||.+.+-++|..|+
T Consensus 316 tnkCKGfgFVtMtNYdEAamAi 337 (360)
T KOG0145|consen 316 TNKCKGFGFVTMTNYDEAAMAI 337 (360)
T ss_pred cccccceeEEEecchHHHHHHH
Confidence 78999999999998885443
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.9e-29 Score=260.66 Aligned_cols=252 Identities=15% Similarity=0.140 Sum_probs=178.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-H--cCCceeCCce
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-A--LDGIIFEGAP 320 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~--l~~~~l~g~~ 320 (544)
+++|||+|||+.+|+++|+++|++||.|. .+.+..+++||||+|.+.++|+.|+ . +++..|.|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~------------~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~ 69 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVS------------YVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQP 69 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCee------------EEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeE
Confidence 67899999999999999999999999754 4444467899999999999999999 4 5789999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCC
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 400 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~ 400 (544)
|.|.++.......... . . ..........+|+|.||++.+++++|+++|+.||.|..|.|+++.
T Consensus 70 l~v~~s~~~~~~~~~~---~----~----------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~ 132 (481)
T TIGR01649 70 AFFNYSTSQEIKRDGN---S----D----------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN 132 (481)
T ss_pred EEEEecCCcccccCCC---C----c----------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC
Confidence 9999875432111000 0 0 000011122369999999999999999999999999999998763
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcCCCCCC-----CC------h----hhHHHHH----HH
Q 009076 401 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGANQ-----PK------P----EQESVLL----HA 459 (544)
Q Consensus 401 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~~~~~~-----~~------~----~~~~~~~----~~ 459 (544)
. +|+|||+|.+.++|.+|+..|||..|.| +.|+|.|+...... .. + +....+. ..
T Consensus 133 ~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~ 208 (481)
T TIGR01649 133 N----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQR 208 (481)
T ss_pred C----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCcccccc
Confidence 2 4799999999999999999999999954 68999998653311 00 0 0000000 00
Q ss_pred HHHH---------------------------HHH-----------Hh-----------hcCCCCCCcceeEecCCCCccc
Q 009076 460 QQQI---------------------------ALQ-----------RL-----------MLQPGSVPSKVVCLTQVVSADE 490 (544)
Q Consensus 460 ~~~~---------------------------~~~-----------~~-----------~~~~~~~~~~~~~l~n~~~~~~ 490 (544)
+... .+. .. .......+..+|++.|+- ++.
T Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~-~~~ 287 (481)
T TIGR01649 209 QPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLH-QEK 287 (481)
T ss_pred ccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCC-CCC
Confidence 0000 000 00 000012366788998882 112
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCceee----ccCceEEEEecCCCCCCCce
Q 009076 491 LKDDEEYEEILEDMRQEGGKFAFCSPT----FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 491 l~~~~~~~~~~~~l~~~f~~fG~V~~i----~~~g~a~V~f~~~~~A~a~~ 537 (544)
+++ ++|+++|+.||.|..| ...|+|||+|.+.++|..|+
T Consensus 288 vt~--------~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 288 VNC--------DRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLAL 330 (481)
T ss_pred CCH--------HHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHH
Confidence 332 3899999999999999 45799999999999997665
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9.8e-30 Score=244.19 Aligned_cols=195 Identities=19% Similarity=0.292 Sum_probs=151.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
.||||++||+.++.++|.++|+.+|+|..|. +|.+...+.++|||||.|+-.++++.|+ .+++..|.|+.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~------vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAV------VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeE------EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 5899999999999999999999999999886 4555566778999999999999999999 89999999999999
Q ss_pred cCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCC
Q 009076 324 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 403 (544)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g 403 (544)
..+...........+.... .....-...+.......+.-.|+|+|||+.+...+|+.+|+.||.|..|.|++.. .|
T Consensus 80 ~~A~~R~r~e~~~~~e~~~---veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dg 155 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKA---VEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DG 155 (678)
T ss_pred ccccccccchhcccccchh---hhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CC
Confidence 8766544332111000000 0000000000000011123479999999999999999999999999999999775 45
Q ss_pred CcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCC
Q 009076 404 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPK 449 (544)
Q Consensus 404 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~ 449 (544)
.-.|||||+|....+|..||..|||..|+|++|-|.|+.++.....
T Consensus 156 klcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 156 KLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred CccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 5569999999999999999999999999999999999987765443
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.4e-28 Score=254.29 Aligned_cols=269 Identities=19% Similarity=0.181 Sum_probs=179.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC--cee
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--APV 321 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g--~~l 321 (544)
..|||+||++.+|+++|+++|+.||.|..+. +......++|||+|.+.++|.+|+ .|||..|.+ +.|
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~----------i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l 166 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIV----------TFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTL 166 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEE----------EEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEE
Confidence 4799999999999999999999999875432 122333579999999999999999 899999865 478
Q ss_pred EEcCCCCCCcc------cc-c----cC-C-----------CCCCC---------CCccccc-----------ccCC----
Q 009076 322 KVRRPSDYNPS------LA-A----TL-G-----------PSQPN---------PNLNLAA-----------VGLT---- 354 (544)
Q Consensus 322 ~v~~~~~~~~~------~~-~----~~-~-----------~~~~~---------~~~~~~~-----------~~~~---- 354 (544)
+|.|+....-. .. . .. + ..... ....+.. ....
T Consensus 167 ~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR01649 167 KIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHG 246 (481)
T ss_pred EEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCccc
Confidence 88765431100 00 0 00 0 00000 0000000 0000
Q ss_pred ------------C---C----CCCCCCCCCEEEEcCCCC-CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEc
Q 009076 355 ------------P---G----SAGGLEGPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 414 (544)
Q Consensus 355 ------------~---~----~~~~~~~~~~l~v~nl~~-~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 414 (544)
+ . ......+.++|||+||++ .+++++|+++|+.||.|..|+|+.++ +|+|||+|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~ 321 (481)
T TIGR01649 247 PPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMA 321 (481)
T ss_pred CCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEEC
Confidence 0 0 000123456899999998 69999999999999999999998873 699999999
Q ss_pred ChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhh--HHHHH--HHHHHHHHHHh------hcCCCCCCcceeEecC
Q 009076 415 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQ--ESVLL--HAQQQIALQRL------MLQPGSVPSKVVCLTQ 484 (544)
Q Consensus 415 ~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~l~n 484 (544)
+.++|..|+..|||..|.|+.|.|.++........... ..... ........... .......++..|.+.|
T Consensus 322 ~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~N 401 (481)
T TIGR01649 322 DPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSN 401 (481)
T ss_pred CHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEec
Confidence 99999999999999999999999999866533211100 00000 00000000000 0001134678899999
Q ss_pred CCCcccCCChHHHHHHHHHHHHHHhhcCC--ceee---c----cCceEEEEecCCCCCCCceE
Q 009076 485 VVSADELKDDEEYEEILEDMRQEGGKFAF--CSPT---F----CYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 485 ~~~~~~l~~~~~~~~~~~~l~~~f~~fG~--V~~i---~----~~g~a~V~f~~~~~A~a~~~ 538 (544)
+ +.++++ ++|+++|+.||. |..| . ..|+|||+|.+.++|..|+.
T Consensus 402 L--p~~~te--------e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~ 454 (481)
T TIGR01649 402 I--PLSVSE--------EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALI 454 (481)
T ss_pred C--CCCCCH--------HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHH
Confidence 9 444443 389999999998 6666 2 25899999999999966654
No 17
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.3e-29 Score=228.92 Aligned_cols=180 Identities=26% Similarity=0.368 Sum_probs=153.4
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
++..-.|+||||.+.+.+.|+.|+..|.+||+|++++ .-.+..+++.+|||||+|.-+|.|+.|+ .|||.+++
T Consensus 108 qALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSIn------MSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG 181 (544)
T KOG0124|consen 108 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 181 (544)
T ss_pred HHHHHhHheeeeeeEEEechHHHHhhccCCCCcceee------cccccccccccceEEEEEeCcHHHHHHHHHhcccccc
Confidence 3445679999999999999999999999999999987 5677789999999999999999999999 99999999
Q ss_pred CceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEc
Q 009076 318 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397 (544)
Q Consensus 318 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~ 397 (544)
|+.|+|.++..-...+. ... -........++|||..+.++++|+||+..|+.||.|+.|.+.
T Consensus 182 GRNiKVgrPsNmpQAQp--------iID----------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LA 243 (544)
T KOG0124|consen 182 GRNIKVGRPSNMPQAQP--------IID----------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA 243 (544)
T ss_pred CccccccCCCCCcccch--------HHH----------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEee
Confidence 99999987653321110 000 000111223589999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 398 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
+.+..+.++||+||+|.+..+...|+..||-+.|+|.-|+|..|.
T Consensus 244 r~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 244 RAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 998888899999999999999999999999999999999998763
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3e-29 Score=220.83 Aligned_cols=212 Identities=22% Similarity=0.344 Sum_probs=162.2
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
.+.++|||+||...+||+-|..||++.|.+..|+ +|.+ .|
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k------~i~~----------------------------------e~ 43 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTK------VIFD----------------------------------EL 43 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccce------eehh----------------------------------hh
Confidence 4578999999999999999999999999887665 2211 45
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 401 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~ 401 (544)
+|.|+.... .+..+.+ .....+||+.|...++-|+|++.|.+||.|.+++|++|..
T Consensus 44 ~v~wa~~p~---------nQsk~t~---------------~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~ 99 (321)
T KOG0148|consen 44 KVNWATAPG---------NQSKPTS---------------NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN 99 (321)
T ss_pred ccccccCcc---------cCCCCcc---------------ccceeEEehhcchhcchHHHHHHhccccccccceEeeccc
Confidence 666554321 1111111 1123699999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeE
Q 009076 402 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVC 481 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (544)
|++++||+||.|-+.++|+.||..|||.+|++|.|+..|+.-+........ +....+..+.....+. ++
T Consensus 100 T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~----------ltfdeV~NQssp~Nts-VY 168 (321)
T KOG0148|consen 100 TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP----------LTFDEVYNQSSPDNTS-VY 168 (321)
T ss_pred CCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC----------ccHHHHhccCCCCCce-EE
Confidence 999999999999999999999999999999999999999977763322221 3333344333333333 34
Q ss_pred ecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee---ccCceEEEEecCCCCCCCceE
Q 009076 482 LTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---FCYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 482 l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i---~~~g~a~V~f~~~~~A~a~~~ 538 (544)
..|+.. .|++ ++|+..|+.||.|..| +.+|+|||.|.+.|.|..|++
T Consensus 169 ~G~I~~--~lte--------~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 169 VGNIAS--GLTE--------DLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred eCCcCc--cccH--------HHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHH
Confidence 444422 2333 2899999999999999 899999999999999977765
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=1e-27 Score=249.00 Aligned_cols=188 Identities=21% Similarity=0.267 Sum_probs=138.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.++|||+|||..+|+++|.++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|++|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~------~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQ------LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence 67899999999999999999999999886654 3344445688999999999999999999 8999999999999
Q ss_pred EcCCCCCCccccccC-----------CC---------------------CCCCCCcc--------cccccCCC-------
Q 009076 323 VRRPSDYNPSLAATL-----------GP---------------------SQPNPNLN--------LAAVGLTP------- 355 (544)
Q Consensus 323 v~~~~~~~~~~~~~~-----------~~---------------------~~~~~~~~--------~~~~~~~~------- 355 (544)
|.++........... +. ....+... ....+...
T Consensus 260 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (457)
T TIGR01622 260 VGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRY 339 (457)
T ss_pred EEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccc
Confidence 998654321110000 00 00000000 00000000
Q ss_pred ----------C--C--CCCCCCCCEEEEcCCCCCCc----------HHHHHHHHHhcCCceEEEEccCCCCCCcceEEEE
Q 009076 356 ----------G--S--AGGLEGPDRIFVGGLPYYFT----------EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFC 411 (544)
Q Consensus 356 ----------~--~--~~~~~~~~~l~v~nl~~~~~----------ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV 411 (544)
. . ........+|+|.||....+ .++|+++|++||.|+.|.|... ...|++||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV 415 (457)
T TIGR01622 340 ATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYL 415 (457)
T ss_pred cccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEE
Confidence 0 0 00123456899999954433 3789999999999999998643 34799999
Q ss_pred EEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 412 VYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 412 ~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+|.+.++|.+|+..|||.+|+|+.|.|.|.
T Consensus 416 ~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 416 KFSSVDAALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred EECCHHHHHHHHHHhcCcccCCeEEEEEEE
Confidence 999999999999999999999999999998
No 20
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.3e-27 Score=238.12 Aligned_cols=195 Identities=24% Similarity=0.373 Sum_probs=145.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC--ce
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--AP 320 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g--~~ 320 (544)
.++|||+|||..+++++|..+|..||.|..+. ++.+...+.++|||||+|.+.++|+.|+ .|||..+.| .+
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSR------ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 56799999999999999999999999876543 2333345678999999999999999999 999999887 56
Q ss_pred eEEcCCCCCCccccccC--------CCCCCC-------------CCcc----------c--------------c----cc
Q 009076 321 VKVRRPSDYNPSLAATL--------GPSQPN-------------PNLN----------L--------------A----AV 351 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~--------~~~~~~-------------~~~~----------~--------------~----~~ 351 (544)
|.|.++........... .+.... +... . . ..
T Consensus 163 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR01661 163 ITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQ 242 (352)
T ss_pred EEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccc
Confidence 77876643221000000 000000 0000 0 0 00
Q ss_pred c--------------CCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChH
Q 009076 352 G--------------LTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 417 (544)
Q Consensus 352 ~--------------~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e 417 (544)
. ...........+.+|||+|||+.+++++|+++|++||.|..++|+.+..+|.++|||||+|.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~ 322 (352)
T TIGR01661 243 RASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYD 322 (352)
T ss_pred cCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHH
Confidence 0 00000011122347999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 418 VTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 418 ~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
+|.+||..|||..|+|+.|.|.|...+
T Consensus 323 ~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 323 EAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred HHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999999999999999999999998654
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.5e-27 Score=207.81 Aligned_cols=184 Identities=18% Similarity=0.386 Sum_probs=154.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.--|||+.|.+.++.++|++.|.+||+|..++ +|.+..++++||||||.|...++|+.|+ .|||+=|+++.|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~ak------virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAK------VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccce------EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 44699999999999999999999999998877 7999999999999999999999999999 9999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
..|+.-....... .+ ..............++|||+|++..++|++|++.|++||.|.+|+|.++
T Consensus 136 TNWATRKp~e~n~-------~~------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~--- 199 (321)
T KOG0148|consen 136 TNWATRKPSEMNG-------KP------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD--- 199 (321)
T ss_pred ccccccCccccCC-------CC------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---
Confidence 9997654311000 00 0000011122334578999999999999999999999999999999999
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhh
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQ 452 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~ 452 (544)
+||+||.|.+.|.|..||..|||..++|..|++.|.+..........
T Consensus 200 ---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~~~~ 246 (321)
T KOG0148|consen 200 ---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGINNQQ 246 (321)
T ss_pred ---cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCCchh
Confidence 89999999999999999999999999999999999977765544433
No 22
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=6.5e-27 Score=226.52 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=135.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
+...|||+||++++++++|+.+|++||.|..+. ..++..+|.++|||||+|...++|.+|+ .|||+.|.|+.|
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~------l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQ------LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLI 350 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeee------eccccccccccCcceEEEecHHHHHHHHHHhccceecCceE
Confidence 344599999999999999999999999986553 4566669999999999999999999999 999999999999
Q ss_pred EEcCCCCCCccccccC---------------------------CCCCC---CCCc----------c--ccccc------C
Q 009076 322 KVRRPSDYNPSLAATL---------------------------GPSQP---NPNL----------N--LAAVG------L 353 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~---------------------------~~~~~---~~~~----------~--~~~~~------~ 353 (544)
+|....+......... .+... .... . ....+ .
T Consensus 351 kV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 430 (549)
T KOG0147|consen 351 KVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSV 430 (549)
T ss_pred EEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCcccc
Confidence 9964332221110000 00000 0000 0 00000 0
Q ss_pred CCC--CCCCCCCCCEEEEcCCCC--CCc--------HHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHH
Q 009076 354 TPG--SAGGLEGPDRIFVGGLPY--YFT--------EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 421 (544)
Q Consensus 354 ~~~--~~~~~~~~~~l~v~nl~~--~~~--------ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~ 421 (544)
.+. .+....++.++.|.||-. ..| .+||.+.|.+||+|.+|.+.+. +.|++||.|.+++.|..
T Consensus 431 ~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~ 505 (549)
T KOG0147|consen 431 DPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGT 505 (549)
T ss_pred CccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHH
Confidence 000 001113445788888832 222 3899999999999999999765 34999999999999999
Q ss_pred HHHHhCCCeeCCeEEEEEEc
Q 009076 422 ACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 422 A~~~l~g~~~~g~~i~v~~~ 441 (544)
|+.+|||.||.|+.|++.|.
T Consensus 506 a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 506 AVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHhhhhhccceeEEEEe
Confidence 99999999999999999997
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=215.39 Aligned_cols=193 Identities=22% Similarity=0.334 Sum_probs=144.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
-++|+|.|||+.+...+|..+|+.||.|..+++ -...-+.-.|||||+|....+|..|| .+|+.+|.|++|-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I-------P~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VA 189 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI-------PRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVA 189 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEc-------ccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeE
Confidence 678999999999999999999999998655431 11122333599999999999999999 9999999999999
Q ss_pred EcCCCCCCccccccCC---------------C--CC---------------CCC--C--c--------------cccc--
Q 009076 323 VRRPSDYNPSLAATLG---------------P--SQ---------------PNP--N--L--------------NLAA-- 350 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~---------------~--~~---------------~~~--~--~--------------~~~~-- 350 (544)
|.|+.+.......... . .. ... . . ....
T Consensus 190 VDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e 269 (678)
T KOG0127|consen 190 VDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEE 269 (678)
T ss_pred Eeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccc
Confidence 9998654433221100 0 00 000 0 0 0000
Q ss_pred -ccCCCC--------CCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHH
Q 009076 351 -VGLTPG--------SAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 421 (544)
Q Consensus 351 -~~~~~~--------~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~ 421 (544)
.+.... ......-..+|||+|||+++|+++|.++|++||.|..+.|+.++.||.++|+|||.|.+..+|+.
T Consensus 270 ~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ 349 (678)
T KOG0127|consen 270 SSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQN 349 (678)
T ss_pred ccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHH
Confidence 000000 01111122689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----CC-CeeCCeEEEEEEcCC
Q 009076 422 ACAAL-----NG-IKMGDKTLTVRRANQ 443 (544)
Q Consensus 422 A~~~l-----~g-~~~~g~~i~v~~~~~ 443 (544)
||.+. .| ..|.|+.|.|..+..
T Consensus 350 ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 350 CIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHhcCccCCCceEEEeccEEeeeeccc
Confidence 99877 24 788999999998733
No 24
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=6.8e-26 Score=188.35 Aligned_cols=170 Identities=25% Similarity=0.429 Sum_probs=144.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
..+|||+||+..++++.|+++|-+.|+|+.+. .-.+..+...+|||||+|.+.++|+-|+ -||...|.|++|+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~------iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLH------IPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeee------cchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 56899999999999999999999999866554 2233345567899999999999999999 8999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceE-EEEccCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDRE 401 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~-v~i~~~~~ 401 (544)
|..+...... .....+|||+||.+.++|..|.+.|+.||.|.. -.|++++.
T Consensus 83 v~kas~~~~n----------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~ 134 (203)
T KOG0131|consen 83 VNKASAHQKN----------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD 134 (203)
T ss_pred EEeccccccc----------------------------ccccccccccccCcchhHHHHHHHHHhccccccCCccccccc
Confidence 9865421111 111248999999999999999999999999765 58888988
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCC
Q 009076 402 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQ 447 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 447 (544)
||.++|+|||-|.+.|.+.+|+..|||..+.+++|.|.|+..+...
T Consensus 135 tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 135 TGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999776543
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2e-25 Score=209.06 Aligned_cols=170 Identities=27% Similarity=0.431 Sum_probs=145.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCce-eCC-
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII-FEG- 318 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~-l~g- 318 (544)
...-+|||+-+|..++|.||+++|++||.|..|+ ++.|..++.++|||||.|.+.++|.+|+ +|+++. |.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ein------l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEIN------LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEE------eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 4456899999999999999999999999998887 7888899999999999999999999999 877644 655
Q ss_pred -ceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEc
Q 009076 319 -APVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397 (544)
Q Consensus 319 -~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~ 397 (544)
.+|.|.++....... ....+|||+-|+..++|.+|+++|++||.|++|.|+
T Consensus 106 ~~pvqvk~Ad~E~er~----------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 106 HHPVQVKYADGERERI----------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred Ccceeecccchhhhcc----------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 467777654332111 112479999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEEEcChHHHHHHHHHhCCCe-eC--CeEEEEEEcCCCCC
Q 009076 398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIK-MG--DKTLTVRRANQGAN 446 (544)
Q Consensus 398 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~-~~--g~~i~v~~~~~~~~ 446 (544)
++ ..|.++|||||.|.+.|.|..||++|||.. +. ..+|.|.|+..+..
T Consensus 158 rd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 158 RD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred ec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99 479999999999999999999999999875 44 47899999976654
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.6e-25 Score=215.39 Aligned_cols=213 Identities=17% Similarity=0.276 Sum_probs=169.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
.|||| +.+|+.+|.++|+++|++.++. +.++. + +-|||||.|.++++|.+|| +||...|.|++|+|.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~r------vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIR------VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEE------EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 58999 9999999999999999998876 44454 4 9999999999999999999 999999999999999
Q ss_pred CCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCC
Q 009076 325 RPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 404 (544)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~ 404 (544)
|...-. ..|||.||+++++..+|.++|+.||.|++|++..+. .|
T Consensus 71 ~s~rd~----------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g- 114 (369)
T KOG0123|consen 71 WSQRDP----------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG- 114 (369)
T ss_pred hhccCC----------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-
Confidence 853211 139999999999999999999999999999999984 55
Q ss_pred cceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecC
Q 009076 405 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQ 484 (544)
Q Consensus 405 ~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 484 (544)
++|+ ||+|+++++|.+|+..|||..+.|+.|.|...........+... . .+ ......+..+.
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~---------~~------~~t~v~vk~~~- 176 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-Y---------KK------RFTNVYVKNLE- 176 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-h---------hh------hhhhhheeccc-
Confidence 8999 99999999999999999999999999999887444321111110 0 00 00111111111
Q ss_pred CCCcccCCChHHHHHHHHHHHHHHhhcCCceee--------ccCceEEEEecCCCCCCCc
Q 009076 485 VVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQ 536 (544)
Q Consensus 485 ~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i--------~~~g~a~V~f~~~~~A~a~ 536 (544)
.+.. . +.|.+.|..||.|+.+ ...|++||.|.+.++|..+
T Consensus 177 ----~~~~-~-------~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 177 ----EDST-D-------EELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred ----cccc-h-------HHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHH
Confidence 1111 1 3899999999999999 4589999999999988544
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=184.36 Aligned_cols=195 Identities=24% Similarity=0.403 Sum_probs=151.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc--
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA-- 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~-- 319 (544)
....|||.+||..+|..+|.++|++||.|+-.. ++++..++.++|.|||.|....+|+.|+ .|||+.-.|.
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSR------iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~te 199 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSR------ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTE 199 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhh------hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCC
Confidence 455799999999999999999999999997655 5677778999999999999999999999 9999987765
Q ss_pred eeEEcCCCCCCcccccc-------------CCCCCCCCC-c--------ccccccCC------------CCCCCCCCCCC
Q 009076 320 PVKVRRPSDYNPSLAAT-------------LGPSQPNPN-L--------NLAAVGLT------------PGSAGGLEGPD 365 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~-------------~~~~~~~~~-~--------~~~~~~~~------------~~~~~~~~~~~ 365 (544)
+|.|++++......... .++...... . .......+ ..........-
T Consensus 200 pItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ 279 (360)
T KOG0145|consen 200 PITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGW 279 (360)
T ss_pred CeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCee
Confidence 78888776443211100 000000000 0 00000000 01122233346
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
+|||-||.++++|.-|.++|.+||.|..|+|++|..+.+=+||+||.+.+-++|..||..|||..++++.|.|.|...
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 899999999999999999999999999999999988899999999999999999999999999999999999999743
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.6e-24 Score=210.71 Aligned_cols=242 Identities=21% Similarity=0.304 Sum_probs=184.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
.|||.||++.++..+|.++|+.||.|++|. +.....| ++|| ||+|.+.+.|.+|+ .+||..+.|+.|.|.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~k-------v~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCK-------VATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEE-------EEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 399999999999999999999999999986 3333333 8999 99999999999999 999999999999997
Q ss_pred CCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCC
Q 009076 325 RPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 404 (544)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~ 404 (544)
.............. ....-..++|.|++.+++++.|.+.|..||.|.++.++.+. .|.
T Consensus 149 ~~~~~~er~~~~~~---------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~ 206 (369)
T KOG0123|consen 149 LFERKEEREAPLGE---------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGK 206 (369)
T ss_pred eccchhhhcccccc---------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCC
Confidence 54433221111000 01112368999999999999999999999999999999984 677
Q ss_pred cceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecC
Q 009076 405 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQ 484 (544)
Q Consensus 405 ~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 484 (544)
++||+||+|.+.++|..|+..|+|..+++..+.|..+.. ..+....+...+.+..... ........+++.|
T Consensus 207 ~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk-----k~e~~~~l~~~~~~~~~~~----~~~~~~~nl~vkn 277 (369)
T KOG0123|consen 207 SKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK-----KSEREAELKRKFEQEFAKR----SVSLQGANLYVKN 277 (369)
T ss_pred CCCccceeecChhHHHHHHHhccCCcCCccceeeccccc-----chhhHHHHhhhhHhhhhhc----ccccccccccccc
Confidence 999999999999999999999999999999999998844 2223333322222222222 1223344555555
Q ss_pred CCCcccCCChHHHHHHHHHHHHHHhhcCCceee--------ccCceEEEEecCCCCCCCce
Q 009076 485 VVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 485 ~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i--------~~~g~a~V~f~~~~~A~a~~ 537 (544)
+ ...+. . +.|+.+|+.||+|+.+ ...|++||+|.+.++|..++
T Consensus 278 l--d~~~~-~-------e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~ 328 (369)
T KOG0123|consen 278 L--DETLS-D-------EKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAM 328 (369)
T ss_pred C--ccccc-h-------hHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHH
Confidence 3 12222 2 3899999999999997 77999999999999996553
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=9.8e-23 Score=192.07 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=136.3
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEe-------ecCCCcEEEEEecCHHHHHHHH-Hc-
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY-------INHEKKFAFVEMRSVEEASNAM-AL- 311 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~-------~~~~kg~afV~f~~~~~A~~Al-~l- 311 (544)
+...|+|||+|||...++++|.+-|++.++ -|+++. ..+++|||||+|.+..+|..|- +|
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-----------GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-----------GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-----------CeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 457789999999999999999999999865 233332 3467999999999999999998 54
Q ss_pred CC-ceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCC
Q 009076 312 DG-IIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 390 (544)
Q Consensus 312 ~~-~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~ 390 (544)
++ +.|.|..+.|.|+......-. ......+.|||+||+.++|||.|+++|+.||.
T Consensus 230 ~g~~klwgn~~tVdWAep~~e~de------------------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 230 PGKIKLWGNAITVDWAEPEEEPDE------------------------DTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred CCceeecCCcceeeccCcccCCCh------------------------hhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 44 668999999999875442111 11222357999999999999999999999999
Q ss_pred ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 391 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 391 i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
|+.|+.++| ||||.|.+.++|.+||+.|||..|+|..|.|.++++...
T Consensus 286 veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 286 VERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 999999877 999999999999999999999999999999999966543
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.8e-22 Score=206.70 Aligned_cols=164 Identities=24% Similarity=0.312 Sum_probs=131.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEE---EeecCCCcEEEEEecCHHHHHHHH-HcCC--cee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVN---VYINHEKKFAFVEMRSVEEASNAM-ALDG--IIF 316 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~---~~~~~~kg~afV~f~~~~~A~~Al-~l~~--~~l 316 (544)
..++|||+|||..+|+++|.+.|..++.... ..++. ...+.++|||||+|.+.++|..|+ .|+. ..+
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv-------~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l 209 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVV-------DVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL 209 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCce-------EEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence 4689999999999999999999999864210 01111 123467899999999999999999 6653 568
Q ss_pred CCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhc--CCceEE
Q 009076 317 EGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESF--GPLRGF 394 (544)
Q Consensus 317 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~--G~i~~v 394 (544)
.|+.|.|.|+....... .......++|||+||+..+++++|+++|+.| |.|+.|
T Consensus 210 ~Gr~I~VdwA~p~~~~d------------------------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV 265 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEVD------------------------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERV 265 (578)
T ss_pred cCceEEEEeeccccccc------------------------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE
Confidence 89999999865332110 0011223589999999999999999999999 999999
Q ss_pred EEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 395 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 395 ~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
.+++ +||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+..
T Consensus 266 ~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 266 KKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred Eeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 8764 499999999999999999999999999999999996653
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.88 E-value=1.1e-22 Score=198.43 Aligned_cols=139 Identities=22% Similarity=0.343 Sum_probs=117.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||+++++++|+++|+.||.|+.|+|+.+..++.++|||||+|.+.++|.+||..|||..|.++.|+|.|+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 44689999999999999999999999999999999998899999999999999999999999999999999999999985
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-----
Q 009076 443 QGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----- 517 (544)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i----- 517 (544)
+... ......|+|.|+ +..+++ ++|+++|++||.|+.+
T Consensus 186 p~~~---------------------------~~~~~~lfV~nL--p~~vte--------e~L~~~F~~fG~V~~v~i~~d 228 (346)
T TIGR01659 186 PGGE---------------------------SIKDTNLYVTNL--PRTITD--------DQLDTIFGKYGQIVQKNILRD 228 (346)
T ss_pred cccc---------------------------ccccceeEEeCC--CCcccH--------HHHHHHHHhcCCEEEEEEeec
Confidence 4211 011234677777 333332 3899999999999887
Q ss_pred ----ccCceEEEEecCCCCCCCceE
Q 009076 518 ----FCYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 518 ----~~~g~a~V~f~~~~~A~a~~~ 538 (544)
..+|+|||+|.+.++|++|+.
T Consensus 229 ~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 229 KLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred CCCCccceEEEEEECCHHHHHHHHH
Confidence 345899999999999977653
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=6.2e-23 Score=182.95 Aligned_cols=146 Identities=25% Similarity=0.475 Sum_probs=131.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
+|||+|||..+++.+|+.+|++||+|+.|. +| |.||||...+...|..|+ .|++..|+|..|.|+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECD------Iv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECD------IV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeee------ee--------cccceEEeecccccHHHHhhcccceecceEEEEE
Confidence 699999999999999999999999876664 22 569999999999999999 899999999999998
Q ss_pred CCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCC
Q 009076 325 RPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 404 (544)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~ 404 (544)
.++... ....+|+|+||.+.++.++|++.|++||+|..+.|+++
T Consensus 70 aSksKs-------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----- 113 (346)
T KOG0109|consen 70 ASKSKS-------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----- 113 (346)
T ss_pred eccccC-------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----
Confidence 655432 12348999999999999999999999999999999876
Q ss_pred cceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 405 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 405 ~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
|+||.|+-.++|..|+..|+|.+|.|+.++|+.++..
T Consensus 114 ---y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 114 ---YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ---eeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999999999999998554
No 33
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=2.9e-21 Score=192.60 Aligned_cols=257 Identities=17% Similarity=0.178 Sum_probs=179.4
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
.+....|+|+|||..+..++|..+|..||.| ..+.+.+....|+|+|..+.+|.+|. .|....+...
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i------------~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~ 449 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEI------------GRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSA 449 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhccccc------------ceeecCcccceeeeeecCccchHHHHHHhchhhhccC
Confidence 3455789999999999999999999999974 33344444446999999999999999 8999999888
Q ss_pred eeEEcCCCCCCcc---ccccC--CCCCC---CCCc---cccccc-CCCC----C-----CCCCCCCCEEEEcCCCCCCcH
Q 009076 320 PVKVRRPSDYNPS---LAATL--GPSQP---NPNL---NLAAVG-LTPG----S-----AGGLEGPDRIFVGGLPYYFTE 378 (544)
Q Consensus 320 ~l~v~~~~~~~~~---~~~~~--~~~~~---~~~~---~~~~~~-~~~~----~-----~~~~~~~~~l~v~nl~~~~~e 378 (544)
++.+.|+....-. ..... ..... .+.. ....+. .... . .......++|||.||+++++.
T Consensus 450 plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~ 529 (725)
T KOG0110|consen 450 PLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTL 529 (725)
T ss_pred ccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccch
Confidence 8888775322111 00000 00000 0000 000000 0000 0 011122234999999999999
Q ss_pred HHHHHHHHhcCCceEEEEccCCCC---CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHH
Q 009076 379 AQIRELLESFGPLRGFDLVKDRET---GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV 455 (544)
Q Consensus 379 e~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~ 455 (544)
++|..+|.++|.|..+.|...+.. -.+.|||||+|.+.++|+.|+.+|+|..|+|..|.|.++...+.....
T Consensus 530 e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g----- 604 (725)
T KOG0110|consen 530 EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG----- 604 (725)
T ss_pred hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc-----
Confidence 999999999999999988776421 235699999999999999999999999999999999999611111000
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee---------ccCceEEEE
Q 009076 456 LLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---------FCYKESGLI 526 (544)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i---------~~~g~a~V~ 526 (544)
..........-|.+.|+ .++....+|+.+|+.||.|..| .+.|++||+
T Consensus 605 -------------K~~~~kk~~tKIlVRNi----------pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~ 661 (725)
T KOG0110|consen 605 -------------KKKSKKKKGTKILVRNI----------PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVD 661 (725)
T ss_pred -------------cccccccccceeeeecc----------chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeee
Confidence 00001112334555555 4556667999999999999999 568999999
Q ss_pred ecCCCCCCCce
Q 009076 527 YTDRRLHNPQF 537 (544)
Q Consensus 527 f~~~~~A~a~~ 537 (544)
|.+.++|..|+
T Consensus 662 f~t~~ea~nA~ 672 (725)
T KOG0110|consen 662 FLTPREAKNAF 672 (725)
T ss_pred ccCcHHHHHHH
Confidence 99999997776
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=1.6e-20 Score=192.60 Aligned_cols=148 Identities=20% Similarity=0.387 Sum_probs=117.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+||++.+++++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 517 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------ 517 (544)
.... .+ .. ..+ .........+++.|+ +.++.+ ++|+.+|++||.|+.+
T Consensus 187 ~p~a-~~----~~---------~~~--~~~~~~~~rLfVgnL--p~~vte--------edLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 187 MPQA-QP----II---------DMV--QEEAKKFNRIYVASV--HPDLSE--------TDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred cccc-cc----cc---------ccc--cccccccceEEeecC--CCCCCH--------HHHHHHHhhcCCeeEEEEEecC
Confidence 2110 00 00 000 001123456778877 333333 3899999999999988
Q ss_pred ---ccCceEEEEecCCCCCCCce
Q 009076 518 ---FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ---~~~g~a~V~f~~~~~A~a~~ 537 (544)
..+||+||+|.+.++|..|+
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHH
Confidence 36899999999999996554
No 35
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=8.6e-20 Score=180.21 Aligned_cols=189 Identities=17% Similarity=0.230 Sum_probs=143.3
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
....++||++||..+++.++.+++..||++..+. .+.+..++.++||||++|.++.....|+ .|||+.++++.
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~------lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR------LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhhe------eecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 4567899999999999999999999999999887 6788888999999999999999999999 99999999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCC-CCCCCCCCCEEEEcCCCC--CC--------cHHHHHHHHHhcC
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPG-SAGGLEGPDRIFVGGLPY--YF--------TEAQIRELLESFG 389 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~--~~--------~ee~l~~~f~~~G 389 (544)
|.|+.+..............+ ....++... ......+..+|++.|+-. ++ -.|+|+..|.+||
T Consensus 361 lvvq~A~~g~~~~~~~~~~~~------~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g 434 (500)
T KOG0120|consen 361 LVVQRAIVGASNANVNFNISQ------SQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG 434 (500)
T ss_pred eEeehhhccchhccccCCccc------cccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC
Confidence 999876543322211111000 000111110 112223344566666621 11 1278889999999
Q ss_pred CceEEEEccCCC---CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 390 PLRGFDLVKDRE---TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 390 ~i~~v~i~~~~~---~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.|..|.|.++-. ..-..|.+||+|.+.++|++|+.+|+|.+|+|++|...|..
T Consensus 435 ~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 435 AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 999999998722 23357889999999999999999999999999999999973
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2e-20 Score=164.73 Aligned_cols=81 Identities=26% Similarity=0.450 Sum_probs=77.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
|+|||..||.+..+.+|.++|-+||.|++.++..|+.|+.++.|+||.|+++.+|+.||.+|||+.|+-+.|+|....++
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred C
Q 009076 445 A 445 (544)
Q Consensus 445 ~ 445 (544)
.
T Consensus 366 d 366 (371)
T KOG0146|consen 366 D 366 (371)
T ss_pred c
Confidence 4
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=1.8e-20 Score=186.93 Aligned_cols=173 Identities=21% Similarity=0.359 Sum_probs=141.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEee----cCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI----NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
.+|||.||++..|.++|...|...|.|+++. |....- ..+.|||||+|.++++|+.|+ .|+|+.|.|+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~-------I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH 588 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIE-------ISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH 588 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEE-------EeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc
Confidence 3499999999999999999999999876643 222221 235699999999999999999 9999999999
Q ss_pred eeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccC
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 399 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~ 399 (544)
.|.|..+....... .+. .......++.|+|.|||+..+..+|+.+|..||.|.+|.|+..
T Consensus 589 ~l~lk~S~~k~~~~---~gK-----------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 589 KLELKISENKPAST---VGK-----------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred eEEEEeccCccccc---ccc-----------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 99998765111100 000 0001112458999999999999999999999999999999988
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 400 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
...+.++|||||+|-++.+|..|+.+|.+..|.|+.|.+.|+...
T Consensus 649 ~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 667778999999999999999999999999999999999999544
No 38
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.7e-19 Score=169.42 Aligned_cols=137 Identities=23% Similarity=0.349 Sum_probs=109.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCe-eCC--eEEEEEEc
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK-MGD--KTLTVRRA 441 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~-~~g--~~i~v~~~ 441 (544)
-+|||+-+|..++|.||+++|++||.|.+|.|++|+.+|.++|||||.|.+.++|.+|+.+||+.. |-| .+|.|.|+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 479999999999999999999999999999999999999999999999999999999999998765 444 67888888
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee----
Q 009076 442 NQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---- 517 (544)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i---- 517 (544)
....... ..+....+-.|....++ .+|+++|++||.|+++
T Consensus 115 d~E~er~-----------------------~~e~KLFvg~lsK~~te-------------~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 115 DGERERI-----------------------VEERKLFVGMLSKQCTE-------------NEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred chhhhcc-----------------------ccchhhhhhhccccccH-------------HHHHHHHHhhCccchhhhee
Confidence 4332110 00111223333322221 3899999999999999
Q ss_pred ----ccCceEEEEecCCCCCCCce
Q 009076 518 ----FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ----~~~g~a~V~f~~~~~A~a~~ 537 (544)
.++|||||+|.+.+.|.+|+
T Consensus 159 d~~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 159 DPDGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred cccccccceeEEEEehHHHHHHHH
Confidence 78999999999999986653
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=2.8e-18 Score=149.56 Aligned_cols=185 Identities=22% Similarity=0.340 Sum_probs=142.6
Q ss_pred cceEEEcCCCCCCcHHHHHH----HHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 244 ARRVYVGGLPPTANEQSVAT----FFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~----~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
..||||.||+..+..++|+. +|++||.|+ .|+...+.+.+|.|||.|.+.+.|..|+ +|+|+.|.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~il---------dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL---------DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeE---------EEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 34899999999999998888 999999765 2555667888999999999999999999 999999999
Q ss_pred ceeEEcCCCCCCccccccCCC-------------------CCCCCCccc-ccccCCCCC-CCCCCCCCEEEEcCCCCCCc
Q 009076 319 APVKVRRPSDYNPSLAATLGP-------------------SQPNPNLNL-AAVGLTPGS-AGGLEGPDRIFVGGLPYYFT 377 (544)
Q Consensus 319 ~~l~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~ 377 (544)
++++|++++..........+. ...+..... ......+.. .....+...||+.|||..++
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~ 159 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE 159 (221)
T ss_pred chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh
Confidence 999999987665433331110 000000000 000000111 12234456799999999999
Q ss_pred HHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC-CeEEEEEEcC
Q 009076 378 EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRAN 442 (544)
Q Consensus 378 ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~i~v~~~~ 442 (544)
.+.|..+|.+|.....|+++... .+.|||+|.+...|..|...|+|..+- ...|.|.|+.
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999999998864 789999999999999999999999986 8888888873
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=7.1e-19 Score=161.52 Aligned_cols=143 Identities=21% Similarity=0.360 Sum_probs=115.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
|+|||+.+.+.+.|+.|+..|.+||+|++|.+.+|+.|++++|||||+|+-+|.|+.|++.|||..++|+.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP--- 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP--- 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC---
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-------
Q 009076 445 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 517 (544)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------- 517 (544)
+..++....+...+.....- .-.++..++.-++. +||+.+|+-||+|+++
T Consensus 191 --sNmpQAQpiID~vqeeAk~f--------nRiYVaSvHpDLSe-------------~DiKSVFEAFG~I~~C~LAr~pt 247 (544)
T KOG0124|consen 191 --SNMPQAQPIIDMVQEEAKKF--------NRIYVASVHPDLSE-------------TDIKSVFEAFGEIVKCQLARAPT 247 (544)
T ss_pred --CCCcccchHHHHHHHHHHhh--------heEEeeecCCCccH-------------HHHHHHHHhhcceeeEEeeccCC
Confidence 34444444443333332211 12334444433222 3899999999999999
Q ss_pred --ccCceEEEEecCCCCC
Q 009076 518 --FCYKESGLIYTDRRLH 533 (544)
Q Consensus 518 --~~~g~a~V~f~~~~~A 533 (544)
.++||+||+|.+..+-
T Consensus 248 ~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CCCccceeeEEeccccch
Confidence 6799999999997765
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=3.2e-19 Score=168.24 Aligned_cols=174 Identities=21% Similarity=0.352 Sum_probs=149.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
+.++|||++|++.++++.|+++|.+||+|..|. ++.+..+++++||+||+|.+++...++|....+.|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~------vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV------VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE------EeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 678999999999999999999999999998876 56666788999999999999999999997778889999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
+..+.......... ......+|||++||.++++++|++.|++||.|..+.++.+..+
T Consensus 79 ~k~av~r~~~~~~~-----------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 79 PKRAVSREDQTKVG-----------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT 135 (311)
T ss_pred ceeccCcccccccc-----------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc
Confidence 98765433221110 0113358999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
...+||+||.|.+.+.+.+++ .+.-+.|.|+.|.|..|.++..
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred cccccceeeEeccccccceec-ccceeeecCceeeEeeccchhh
Confidence 999999999999999999988 5678899999999999976654
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=1.9e-17 Score=154.75 Aligned_cols=268 Identities=17% Similarity=0.171 Sum_probs=179.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcE-EEEEecCHHHHHHHH-HcCCceeCC--ce
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKF-AFVEMRSVEEASNAM-ALDGIIFEG--AP 320 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~-afV~f~~~~~A~~Al-~l~~~~l~g--~~ 320 (544)
-.++|+++-+.++-+-|..+|+.||.|. .-+.+.++-+| |+|+|.+.+.|+.|. .|+|+.|.. +.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~Vl-----------KIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCt 219 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVL-----------KIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCT 219 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeE-----------EEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeE
Confidence 3688999999999999999999999742 22334556665 999999999999999 999988743 45
Q ss_pred eEEcCCC----------CCCccc---cccCCCCCC------------CCCcccccccCCC---------CCCCCCCCCCE
Q 009076 321 VKVRRPS----------DYNPSL---AATLGPSQP------------NPNLNLAAVGLTP---------GSAGGLEGPDR 366 (544)
Q Consensus 321 l~v~~~~----------~~~~~~---~~~~~~~~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~ 366 (544)
|+|.+++ +..... ....+..++ .+........... +.........+
T Consensus 220 LrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~v 299 (492)
T KOG1190|consen 220 LRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVV 299 (492)
T ss_pred EEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceE
Confidence 6665432 111000 000000000 0000000000000 01111112467
Q ss_pred EEEcCCCCC-CcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 367 IFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 367 l~v~nl~~~-~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
|.|.||... +|.+.|..+|..||.|..|+|+..+ +..|+|+|.+...|+.|+..|+|..+.|+.|+|.+++...
T Consensus 300 llvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 300 LLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred EEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 889998654 9999999999999999999999885 4679999999999999999999999999999999998776
Q ss_pred CCCChhh--HHHHHHHHHHHHHHHhh------cCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee
Q 009076 446 NQPKPEQ--ESVLLHAQQQIALQRLM------LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT 517 (544)
Q Consensus 446 ~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i 517 (544)
.+...+- ...+.....+..+.... ......|+..+.|.|+ +....+ |++++.|..-|.+++.
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsni--p~svse--------e~lk~~f~~~g~~vka 444 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNI--PPSVSE--------EDLKNLFQEPGGQVKA 444 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccC--Ccccch--------hHHHHhhhcCCceEEe
Confidence 5543321 11112222222222211 1123467778888888 333332 4899999999998777
Q ss_pred -----ccCceEEEEecCCCCCCCceE
Q 009076 518 -----FCYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 518 -----~~~g~a~V~f~~~~~A~a~~~ 538 (544)
.....|++++.++|+|.-++.
T Consensus 445 fkff~kd~kmal~q~~sveeA~~ali 470 (492)
T KOG1190|consen 445 FKFFQKDRKMALPQLESVEEAIQALI 470 (492)
T ss_pred eeecCCCcceeecccCChhHhhhhcc
Confidence 566899999999999955543
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.5e-16 Score=135.57 Aligned_cols=85 Identities=26% Similarity=0.547 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 66543
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.8e-16 Score=130.44 Aligned_cols=173 Identities=24% Similarity=0.353 Sum_probs=127.1
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC---CCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH---EKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~---~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
...++|||+|||.++-+.+|.++|.+||.| ..+.+.. .-.||||+|.++.+|+.|+ ..+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i------------~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRI------------REIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcce------------EEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 347899999999999999999999999975 3333332 2579999999999999999 89999999
Q ss_pred CceeEEcCCCCCCccccccCCCCCCCCCcccccc-cCCCCC---CCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceE
Q 009076 318 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAV-GLTPGS---AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG 393 (544)
Q Consensus 318 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~ 393 (544)
|..|.|.++...-...... +.. +.... +...+. ...--....|.|.+||+..+++||++++...|.|-.
T Consensus 72 g~rLRVEfprggr~s~~~~-G~y------~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCf 144 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRR-GSY------SGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCF 144 (241)
T ss_pred cceEEEEeccCCCcccccc-ccc------CCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeee
Confidence 9999999876543111100 000 00000 000000 001112247999999999999999999999999998
Q ss_pred EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee--CCeEEEEEE
Q 009076 394 FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM--GDKTLTVRR 440 (544)
Q Consensus 394 v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--~g~~i~v~~ 440 (544)
..+.++ |++.|+|...|+..-|+..|....+ .|...-+..
T Consensus 145 adv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 145 ADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 888877 4889999999999999999987766 444444433
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.69 E-value=5.1e-17 Score=135.72 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=111.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
..+|||+||+..++++.|.++|-+.|+|+.+.|+++..+...+|||||+|.+.|+|.-|++.||...|.|++|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999841
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 517 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------ 517 (544)
... ......-+.+.|+ ++ + .|.. .|...|+.||.|...
T Consensus 89 ~~~--------------------------nl~vganlfvgNL-d~-~-vDe~-------~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 89 HQK--------------------------NLDVGANLFVGNL-DP-E-VDEK-------LLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc--------------------------ccccccccccccc-Cc-c-hhHH-------HHHHHHHhccccccCCccccc
Confidence 110 0111233455555 22 2 2222 678899999999885
Q ss_pred ----ccCceEEEEecCCCCCCCc
Q 009076 518 ----FCYKESGLIYTDRRLHNPQ 536 (544)
Q Consensus 518 ----~~~g~a~V~f~~~~~A~a~ 536 (544)
...|++||.|.+.+.+-++
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHH
Confidence 6688999999998877443
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.66 E-value=8.7e-15 Score=137.11 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=136.8
Q ss_pred cceEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 244 ARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 244 ~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...|.|.||.. .+|.+-|..+|.-||+| ..+.+-. .+-.|+|+|.+...|+.|| .|+|..|.|+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdV------------qRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDV------------QRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcce------------EEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCce
Confidence 67899999976 66999999999999974 3343333 3468999999999999999 99999999999
Q ss_pred eEEcCCCCCCccccccCCCCCC------CCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEE
Q 009076 321 VKVRRPSDYNPSLAATLGPSQP------NPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGF 394 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v 394 (544)
|+|.+++....+......+.+. ...+................++.+|++.|+|..++||+|+.+|..-|.....
T Consensus 365 lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vka 444 (492)
T KOG1190|consen 365 LRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA 444 (492)
T ss_pred EEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEe
Confidence 9999887666544432222111 0111111111222233444566799999999999999999999998876554
Q ss_pred EEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCe-EEEEEEcC
Q 009076 395 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TLTVRRAN 442 (544)
Q Consensus 395 ~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~i~v~~~~ 442 (544)
..... +.+.+|++++.++|+|..|+..||.+.+++. .|+|+|++
T Consensus 445 fkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 445 FKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred eeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 33322 2366999999999999999999999999765 89999984
No 47
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.63 E-value=4.5e-15 Score=127.88 Aligned_cols=179 Identities=21% Similarity=0.342 Sum_probs=120.7
Q ss_pred hhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC----CCcEEEEEecCHHHHHHHH-HcCCc
Q 009076 240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH----EKKFAFVEMRSVEEASNAM-ALDGI 314 (544)
Q Consensus 240 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~----~kg~afV~f~~~~~A~~Al-~l~~~ 314 (544)
....-++|||.|||.++...+|+.+|..|--..+ ..++. +.+ .+-+|||.|.+...|.+|| .|||+
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEg--------slLK~-Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv 100 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEG--------SLLKY-TSKGDQVCKPVAFATFTSHQFALAAMNALNGV 100 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccc--------eeeee-ccCCCccccceEEEEecchHHHHHHHHHhcCe
Confidence 3445789999999999999999999998843222 12222 222 3579999999999999999 99999
Q ss_pred eeC---CceeEEcCCCCCCccccccCCC-CCCCCCcc-------------------------cccccCC-----------
Q 009076 315 IFE---GAPVKVRRPSDYNPSLAATLGP-SQPNPNLN-------------------------LAAVGLT----------- 354 (544)
Q Consensus 315 ~l~---g~~l~v~~~~~~~~~~~~~~~~-~~~~~~~~-------------------------~~~~~~~----------- 354 (544)
.|+ +..|+|..++............ +...+.+. +...+..
T Consensus 101 rFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~ 180 (284)
T KOG1457|consen 101 RFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKS 180 (284)
T ss_pred eeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccch
Confidence 985 5678887554332211110000 00000000 0000000
Q ss_pred ----------C----------CCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEc
Q 009076 355 ----------P----------GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 414 (544)
Q Consensus 355 ----------~----------~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 414 (544)
+ ........+.+|||-||..+++|++|+.+|+.|.....++|-.. .| ..+|||+|+
T Consensus 181 ~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~ 256 (284)
T KOG1457|consen 181 EALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFE 256 (284)
T ss_pred hhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHH
Confidence 0 00011223357999999999999999999999988777777543 23 458999999
Q ss_pred ChHHHHHHHHHhCCCee
Q 009076 415 DLSVTDIACAALNGIKM 431 (544)
Q Consensus 415 ~~e~A~~A~~~l~g~~~ 431 (544)
..+.|..|+..|+|..|
T Consensus 257 ~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 257 EIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHhhccee
Confidence 99999999999999887
No 48
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.63 E-value=8.4e-16 Score=137.69 Aligned_cols=124 Identities=19% Similarity=0.317 Sum_probs=105.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
+|||+|||..+++.+|+.+|++||+|.++.|+++ ||||..++...|.-||..|||..|.|..|.|.-++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 7999999999999999999999999999999976 99999999999999999999999999999999885441
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-ccCceEE
Q 009076 446 NQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-FCYKESG 524 (544)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-~~~g~a~ 524 (544)
.++..+.+.|+. +. +.+ .+|++.|++||+|+.+ .-++++|
T Consensus 76 -----------------------------k~stkl~vgNis-~t--ctn-------~ElRa~fe~ygpviecdivkdy~f 116 (346)
T KOG0109|consen 76 -----------------------------KASTKLHVGNIS-PT--CTN-------QELRAKFEKYGPVIECDIVKDYAF 116 (346)
T ss_pred -----------------------------CCccccccCCCC-cc--ccC-------HHHhhhhcccCCceeeeeecceeE
Confidence 234445555551 11 222 2899999999999999 7789999
Q ss_pred EEecCCCCCCCc
Q 009076 525 LIYTDRRLHNPQ 536 (544)
Q Consensus 525 V~f~~~~~A~a~ 536 (544)
|+|.-.++|.-+
T Consensus 117 vh~d~~eda~~a 128 (346)
T KOG0109|consen 117 VHFDRAEDAVEA 128 (346)
T ss_pred EEEeeccchHHH
Confidence 999999999443
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.63 E-value=3.4e-15 Score=143.66 Aligned_cols=168 Identities=23% Similarity=0.291 Sum_probs=129.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v 323 (544)
..-|-+.+||+.+|+++|.+||+.|+ |.. .++....++..|-|||+|.+.+++++||+++...+..+-|.|
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~--------~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IEN--------LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeE--------EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 34588999999999999999999984 211 344445588899999999999999999999999999999999
Q ss_pred cCCCCCCc-cccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceE-EEEccCCC
Q 009076 324 RRPSDYNP-SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDRE 401 (544)
Q Consensus 324 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~-v~i~~~~~ 401 (544)
-.+..... +.....++. ......+|-|++||+.|+++||.++|+..-.|.. |.++.+ .
T Consensus 81 f~~~~~e~d~~~~~~g~~-------------------s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~ 140 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPN-------------------SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-Q 140 (510)
T ss_pred EccCCccccccccCCCCC-------------------CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-C
Confidence 76543321 111111110 1122348999999999999999999998766655 445555 4
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 402 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.+.|-|||+|++.+.|++||.. |...|+-+-|.|-.+
T Consensus 141 rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 141 RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 677899999999999999999954 777888888888654
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=1.1e-14 Score=133.91 Aligned_cols=195 Identities=16% Similarity=0.176 Sum_probs=136.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEe---ecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~---~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
+..|||.|||..+|.+++.++|+.||-|..- +..+.+.+.+. .|.-+|=|+|.|...++...|+ -|++..|.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d--~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRD--PQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEecc--CCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4569999999999999999999999977542 11223333332 3566899999999999999999 8999999999
Q ss_pred eeEEcCCCCCCccccccCCCCC-CCCCc----ccc--cccCCCC--CCCCCCCCCEEEEcCCCCC----C-------cHH
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQ-PNPNL----NLA--AVGLTPG--SAGGLEGPDRIFVGGLPYY----F-------TEA 379 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~-~~~~~----~~~--~~~~~~~--~~~~~~~~~~l~v~nl~~~----~-------~ee 379 (544)
.|+|+.++.+..-.-....... ..... ... ..+..+. ...-....++|.|.||-.. . -++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999887643321111000000 00000 000 0001111 1222334568999998322 1 248
Q ss_pred HHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 380 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 380 ~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
+|.+.|++||.|..|.|.-. .+.|.+-|.|.+.++|..||+.|+|++|+|+.|......-.
T Consensus 292 dl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 89999999999999988743 24789999999999999999999999999999999876433
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.1e-15 Score=132.33 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=126.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
..|||++||+.+.+.+|..||..||.+..+ .+ -.||+||+|.+..+|..|+ .+++..|.|-.+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~------------~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDA------------DM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccc------------ee--ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 369999999999999999999999976432 22 2368899999999999999 99999999988888
Q ss_pred cCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCC
Q 009076 324 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 403 (544)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g 403 (544)
.++......... +... ...+............+.|+|.|+...+.+.+|.+.|.++|.+....+
T Consensus 68 e~~r~~~~~~g~----~~~g-----~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------- 131 (216)
T KOG0106|consen 68 EHARGKRRGRGR----PRGG-----DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------- 131 (216)
T ss_pred ecccccccccCC----CCCC-----CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------
Confidence 887643322200 0000 000000111122334468999999999999999999999999955544
Q ss_pred CcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 404 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 404 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
..+++||+|.+.++|..|+..|+|..+.|+.|.+.+
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 256999999999999999999999999999999944
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.59 E-value=1.8e-14 Score=132.44 Aligned_cols=170 Identities=18% Similarity=0.310 Sum_probs=129.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceE--------EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRG--------FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
+.|||.|||.++|-+++.++|++||.|.. |+|.++. .|.-+|-|++.|...++...|+..|++..|.|+.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 46999999999999999999999998753 7888874 58999999999999999999999999999999999
Q ss_pred EEEEcCCCCCC---CChhhH-HHHHHHHHHHHHHHhh-------cCCCCCCcceeEecCCCCcccCCCh-HHHHHHHHHH
Q 009076 437 TVRRANQGANQ---PKPEQE-SVLLHAQQQIALQRLM-------LQPGSVPSKVVCLTQVVSADELKDD-EEYEEILEDM 504 (544)
Q Consensus 437 ~v~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~n~~~~~~l~~~-~~~~~~~~~l 504 (544)
+|..|+-.... +..... ........+...+++. .....-...++.|.|+|++.++.++ ....+|.++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99988543311 111100 0000011111111111 1112345678999999999988665 7888999999
Q ss_pred HHHHhhcCCceee-----ccCceEEEEecCCCCCCC
Q 009076 505 RQEGGKFAFCSPT-----FCYKESGLIYTDRRLHNP 535 (544)
Q Consensus 505 ~~~f~~fG~V~~i-----~~~g~a~V~f~~~~~A~a 535 (544)
.+.|++||.|.+| ...|.+-|.|.+.++|..
T Consensus 294 ~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ 329 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQ 329 (382)
T ss_pred HHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHH
Confidence 9999999999999 679999999999999844
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=1.9e-14 Score=107.81 Aligned_cols=70 Identities=30% Similarity=0.653 Sum_probs=66.9
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 367 l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
|||+|||..+++++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5788999999999999999999999999999999985
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.55 E-value=1.1e-14 Score=124.09 Aligned_cols=84 Identities=19% Similarity=0.399 Sum_probs=74.0
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
....++|||+|||+.+|+++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|+.|+ .||+..|.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK------VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34567899999999999999999999999987765 4556667889999999999999999999 8999999999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
.|+|.++....
T Consensus 105 ~l~V~~a~~~~ 115 (144)
T PLN03134 105 HIRVNPANDRP 115 (144)
T ss_pred EEEEEeCCcCC
Confidence 99999876543
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.55 E-value=7.1e-14 Score=131.93 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=137.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHH-HHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQ-VMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~-~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..+.+||+|||+++..++|+++|.. .|+|..|. ++-...++++|||.|+|.++|.+++|+ .||.+.+.|++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yve-------Ll~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~ 115 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVE-------LLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRE 115 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeee-------eecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCce
Confidence 4567999999999999999999986 45554332 334456789999999999999999999 99999999999
Q ss_pred eEEcCCCCCCccccccC---C------------------------------CCCC-----C---------------CCcc
Q 009076 321 VKVRRPSDYNPSLAATL---G------------------------------PSQP-----N---------------PNLN 347 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~---~------------------------------~~~~-----~---------------~~~~ 347 (544)
|.|+...+.+..+-... + .... . ...+
T Consensus 116 l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~ 195 (608)
T KOG4212|consen 116 LVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYN 195 (608)
T ss_pred EEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhh
Confidence 99975443221110000 0 0000 0 0000
Q ss_pred ccc---ccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHH
Q 009076 348 LAA---VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424 (544)
Q Consensus 348 ~~~---~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~ 424 (544)
+.. .-..+-....+.....+||.||.+.+....|++.|.-.|.|..|.+-.++ -|.++|+|.++|..+-+|.+||.
T Consensus 196 lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 196 LFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred cccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHH
Confidence 000 00000001122233579999999999999999999999999999998886 46889999999999999999999
Q ss_pred HhCCCeeCCeEEEEEE
Q 009076 425 ALNGIKMGDKTLTVRR 440 (544)
Q Consensus 425 ~l~g~~~~g~~i~v~~ 440 (544)
.|++.-+..++..+..
T Consensus 275 ml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 275 MLDRQGLFDRRMTVRL 290 (608)
T ss_pred hhccCCCccccceeec
Confidence 9998777777777766
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.3e-14 Score=124.00 Aligned_cols=82 Identities=30% Similarity=0.466 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|-|.||+.+++|++|.++|.+||.|..|.|.+++.||.++|||||.|.+.++|++||..|||+-++.-.|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 54
No 57
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=4.1e-14 Score=120.63 Aligned_cols=84 Identities=27% Similarity=0.471 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
++...|.|-||-+.++.++|+.+|++||.|-+|.|++++.|+.++|||||.|....+|+.|+++|+|.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
.-..
T Consensus 91 rygr 94 (256)
T KOG4207|consen 91 RYGR 94 (256)
T ss_pred hcCC
Confidence 5543
No 58
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.50 E-value=7.9e-14 Score=121.92 Aligned_cols=163 Identities=17% Similarity=0.230 Sum_probs=113.0
Q ss_pred CEEEEcCCCCCCcHHHHHH----HHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRE----LLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~----~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
.+|||.||+..+..++|+. +|+.||.|..|...+. .+.+|-|||.|.+++.|..|+.+|+|+.|.|++++|+|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999988887 9999999999988754 56799999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhH---HH--------HH----HHHHHH--------HHHHhhcCCCCCCcceeEecCCCCcccCCChHHH
Q 009076 441 ANQGANQPKPEQE---SV--------LL----HAQQQI--------ALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEY 497 (544)
Q Consensus 441 ~~~~~~~~~~~~~---~~--------~~----~~~~~~--------~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~ 497 (544)
|......-....- .. .. ....+. .+..........+..++.+.|+ +.+ .-
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ni--P~e-----s~ 159 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNI--PSE-----SE 159 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecC--Ccc-----hh
Confidence 9776542221000 00 00 000000 0000000122456677777777 222 22
Q ss_pred HHHHHHHHHHHhhcCCceee-ccCceEEEEecCCCCCCCce
Q 009076 498 EEILEDMRQEGGKFAFCSPT-FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 498 ~~~~~~l~~~f~~fG~V~~i-~~~g~a~V~f~~~~~A~a~~ 537 (544)
.+..++|.+-|.-|..|..| .-.+.|||+|.+.-.|.++.
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~ 200 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQ 200 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHh
Confidence 33445666667777777777 56889999999988775444
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.7e-13 Score=102.48 Aligned_cols=70 Identities=29% Similarity=0.614 Sum_probs=64.9
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 367 l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
|+|+|||+.+++++|.++|+.||.|..+.+...+. |..+|+|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999884
No 60
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.4e-13 Score=122.71 Aligned_cols=82 Identities=32% Similarity=0.547 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
..+.+||||.-|+++++|.+|+.+|+.||.|+.|.|+.+..||+++|||||+|+..-+..+|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 009076 441 AN 442 (544)
Q Consensus 441 ~~ 442 (544)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 63
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.4e-13 Score=108.12 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+++|||+||...++||+|.++|+++|.|..|.|-.++.+..+-|||||+|.+.++|..|+..++|..|+.++|.|.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3469999999999999999999999999999999888877778899999999999999999999999999999999986
No 62
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=9.3e-15 Score=122.00 Aligned_cols=78 Identities=38% Similarity=0.718 Sum_probs=75.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.-|||+|||+.+||.||..+|++||.|+.|.+++++.||+++||||+.|++.-+...|+..|||..|.|+.|+|..+.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999873
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=3.2e-13 Score=123.36 Aligned_cols=85 Identities=24% Similarity=0.521 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 359 GGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 359 ~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
.....+++|+|.|||+..-+-||+.+|++||.|.+|.|+.+. - -+|||+||.|++.++|.+|..+|||..+.||.|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-R-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-R-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-C-CCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344566799999999999999999999999999999999883 3 35999999999999999999999999999999999
Q ss_pred EEcCCCC
Q 009076 439 RRANQGA 445 (544)
Q Consensus 439 ~~~~~~~ 445 (544)
.-++...
T Consensus 169 n~ATarV 175 (376)
T KOG0125|consen 169 NNATARV 175 (376)
T ss_pred eccchhh
Confidence 9986553
No 64
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=8.6e-13 Score=99.65 Aligned_cols=78 Identities=26% Similarity=0.532 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+....|||.|||+.+|.|++.++|.+||.|..|+|-..+. .+|.|||.|+++.+|.+|+..|+|..+.++.|.|.|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3445799999999999999999999999999999976643 4899999999999999999999999999999999998
Q ss_pred C
Q 009076 442 N 442 (544)
Q Consensus 442 ~ 442 (544)
+
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 3
No 65
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.4e-13 Score=109.03 Aligned_cols=81 Identities=31% Similarity=0.455 Sum_probs=77.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
.|||.++...++|++|.+.|..||.|+.|.+-.+..||..+|||+|+|++.++|++|+.+|||..|.|+.|.|.||..+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999996554
Q ss_pred C
Q 009076 446 N 446 (544)
Q Consensus 446 ~ 446 (544)
+
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 3
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.6e-13 Score=112.14 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=71.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+||+..+++.+|..+|..||.|..|.|...+ .|||||+|+++-+|..|+..|+|..|.|..|.|.+++-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3589999999999999999999999999999998875 89999999999999999999999999999999999854
Q ss_pred CC
Q 009076 444 GA 445 (544)
Q Consensus 444 ~~ 445 (544)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.43 E-value=3.5e-13 Score=127.60 Aligned_cols=146 Identities=18% Similarity=0.312 Sum_probs=119.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||++|++.+++|.|++.|.+||.|..+.+++++.++.++||+||+|.+++....+| ...-+.|.|+.|.+..+.+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceeccC
Confidence 468999999999999999999999999999999999999999999999999999998887 4467889999999999866
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 517 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------ 517 (544)
...+..... ...++.+.+..+ +.++.. ++++++|++||.|..+
T Consensus 85 r~~~~~~~~---------------------~~~tkkiFvGG~--~~~~~e--------~~~r~yfe~~g~v~~~~~~~d~ 133 (311)
T KOG4205|consen 85 REDQTKVGR---------------------HLRTKKIFVGGL--PPDTTE--------EDFKDYFEQFGKVADVVIMYDK 133 (311)
T ss_pred ccccccccc---------------------ccceeEEEecCc--CCCCch--------HHHhhhhhccceeEeeEEeecc
Confidence 655433221 124666777655 333332 3899999999988877
Q ss_pred ---ccCceEEEEecCCCCCCCceEEEE
Q 009076 518 ---FCYKESGLIYTDRRLHNPQFVYFY 541 (544)
Q Consensus 518 ---~~~g~a~V~f~~~~~A~a~~~~~~ 541 (544)
...|++||.|.+.+...+.+..-|
T Consensus 134 ~~~~~rgFgfv~~~~e~sVdkv~~~~f 160 (311)
T KOG4205|consen 134 TTSRPRGFGFVTFDSEDSVDKVTLQKF 160 (311)
T ss_pred cccccccceeeEeccccccceecccce
Confidence 778999999999999866665544
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=9.5e-13 Score=119.84 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=69.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
++|||+||++.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..|| .|||..|.|+.|.|.++..
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 5899999999999999999999999999999988743 4789999999999999999 5999999999999999863
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=2.1e-12 Score=123.93 Aligned_cols=76 Identities=17% Similarity=0.356 Sum_probs=70.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcCh--HHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL--SVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.+|||+||++.+++++|..+|..||.|..|.|++. +| +|||||+|.+. .++.+||..|||..+.|+.|+|..+.
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 48999999999999999999999999999999954 67 99999999987 68999999999999999999999984
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 43
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.39 E-value=1.6e-11 Score=114.02 Aligned_cols=268 Identities=18% Similarity=0.125 Sum_probs=165.5
Q ss_pred ccceEEEcCC--CCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC-C
Q 009076 243 HARRVYVGGL--PPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE-G 318 (544)
Q Consensus 243 ~~~~l~V~nL--p~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~-g 318 (544)
.++.|.+.=| -+.+|.+-|..+..+.|+|. .-+.+.++--.|.|+|.+.+.|++|. .|||..|. |
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVl-----------RIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVL-----------RIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceE-----------EEEEEeccceeeEEeechhHHHHHHHhhccccccccc
Confidence 4455555544 45789999999999998753 22334445557999999999999999 99998864 3
Q ss_pred -ceeEEcCCCCCC---------cc---ccccCCC---------CCCCCC------cccc--ccc----------------
Q 009076 319 -APVKVRRPSDYN---------PS---LAATLGP---------SQPNPN------LNLA--AVG---------------- 352 (544)
Q Consensus 319 -~~l~v~~~~~~~---------~~---~~~~~~~---------~~~~~~------~~~~--~~~---------------- 352 (544)
.+|+|.+++... .| +....++ .+..+. .+.. ..+
T Consensus 188 CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r 267 (494)
T KOG1456|consen 188 CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSR 267 (494)
T ss_pred ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCC
Confidence 478887654211 00 0000000 000000 0000 000
Q ss_pred --------CCCCCCCCCCCCCEEEEcCCCCC-CcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHH
Q 009076 353 --------LTPGSAGGLEGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423 (544)
Q Consensus 353 --------~~~~~~~~~~~~~~l~v~nl~~~-~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~ 423 (544)
..........+.+++.|.+|+.. ++-+.|..+|-.||.|..|++++.+ .|.|.||+.+..+.+.|+
T Consensus 268 ~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 268 YRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAV 342 (494)
T ss_pred CccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHH
Confidence 00111233345578999999877 6779999999999999999999885 789999999999999999
Q ss_pred HHhCCCeeCCeEEEEEEcCCCCCCCC---------hhhHHHHHHHHH-HHHHHHhhcCCCCCCcceeEecCCCCcccCCC
Q 009076 424 AALNGIKMGDKTLTVRRANQGANQPK---------PEQESVLLHAQQ-QIALQRLMLQPGSVPSKVVCLTQVVSADELKD 493 (544)
Q Consensus 424 ~~l~g~~~~g~~i~v~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~ 493 (544)
..||+..+.|..|.|.++.+....+. +..+.......+ ..............|+.+|..-|. +-.+++
T Consensus 343 ~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNa--P~~vtE 420 (494)
T KOG1456|consen 343 THLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNA--PLGVTE 420 (494)
T ss_pred HHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecC--CCccCH
Confidence 99999999999999999876654332 111111111111 011111122223456777777766 444443
Q ss_pred hHHHHHHHHHHHHHHhhcCCc---eee-----ccCceEEEEecCCCCCCCc
Q 009076 494 DEEYEEILEDMRQEGGKFAFC---SPT-----FCYKESGLIYTDRRLHNPQ 536 (544)
Q Consensus 494 ~~~~~~~~~~l~~~f~~fG~V---~~i-----~~~g~a~V~f~~~~~A~a~ 536 (544)
+ .|..+|..-+.- ++| .-.-.+.++|+++.+|.-+
T Consensus 421 e--------~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Avea 463 (494)
T KOG1456|consen 421 E--------QLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEA 463 (494)
T ss_pred H--------HHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHH
Confidence 3 444455433221 122 3334579999999999443
No 71
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=1.8e-12 Score=120.62 Aligned_cols=248 Identities=19% Similarity=0.178 Sum_probs=158.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v 323 (544)
.-.|-..+||+...+.+|..||...--.. -+..+.....+..-|+|.|.|.+.+.-..|++.+.+.+.++.|.|
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~------gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryiev 133 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIAN------GGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEV 133 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccc------cceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceee
Confidence 34567789999999999999998653221 122344444566778999999999999999998999999999999
Q ss_pred cCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhc----CCceEEEEccC
Q 009076 324 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESF----GPLRGFDLVKD 399 (544)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~----G~i~~v~i~~~ 399 (544)
-.+....-..-.........+- ......-.|-+++||+++++.+|.++|.+- |.++.|.++..
T Consensus 134 Yka~ge~f~~iagg~s~e~~~f-------------lsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r 200 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPF-------------LSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR 200 (508)
T ss_pred eccCchhheEecCCccccCCCC-------------CCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC
Confidence 6544222110000000000000 000011258899999999999999999742 23445555554
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHH---hhc------
Q 009076 400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQR---LML------ 470 (544)
Q Consensus 400 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------ 470 (544)
.+|+.+|-|||.|..+++|+.||.+ |...++-+-|.+-.++.. +.++-+.... +..
T Consensus 201 -pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaa-------------Evqqvlnr~~s~pLi~~~~sp~ 265 (508)
T KOG1365|consen 201 -PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAA-------------EVQQVLNREVSEPLIPGLTSPL 265 (508)
T ss_pred -CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHH-------------HHHHHHHhhccccccCCCCCCC
Confidence 3789999999999999999999955 666666666655443111 0111111110 111
Q ss_pred --------CCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-----------ccCceEEEEecCCC
Q 009076 471 --------QPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-----------FCYKESGLIYTDRR 531 (544)
Q Consensus 471 --------~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-----------~~~g~a~V~f~~~~ 531 (544)
-+...+..|+-|..+ .|+..+|+|-.+|..|-.-+.. ...|.|||+|.+.|
T Consensus 266 ~p~~p~~~~p~~~~kdcvRLRGL----------Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae 335 (508)
T KOG1365|consen 266 LPGGPARLVPPTRSKDCVRLRGL----------PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAE 335 (508)
T ss_pred CCCCccccCCCCCCCCeeEecCC----------ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhH
Confidence 011123567777666 4666677888777776554333 55789999999999
Q ss_pred CCCC
Q 009076 532 LHNP 535 (544)
Q Consensus 532 ~A~a 535 (544)
.|.+
T Consensus 336 ~a~a 339 (508)
T KOG1365|consen 336 RARA 339 (508)
T ss_pred HHHH
Confidence 9844
No 72
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=9.1e-13 Score=98.56 Aligned_cols=69 Identities=35% Similarity=0.570 Sum_probs=59.4
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 247 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 247 l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
|||+|||+.+|+++|.++|++||.|..+. +.....+..++||||+|.+.++|.+|+ .++|..|.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~-------~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIK-------VMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEE-------EEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccc-------ccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999875542 222244567899999999999999999 7999999999885
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=6.6e-12 Score=94.11 Aligned_cols=72 Identities=40% Similarity=0.731 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
+|+|.|||..+++++|+++|..||.|..+.+..+. +.+.|+|||+|.+.++|..|+..|+|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 6778999999999999999999999999999999873
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.34 E-value=6.1e-12 Score=122.51 Aligned_cols=168 Identities=24% Similarity=0.337 Sum_probs=115.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.++|||+|||..+|+++|.++|..||.|..+. +..+..++.++|||||+|.+.++|..|+ .+++..|.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~------~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR------LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE------eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 68999999999999999999999999986654 3344467899999999999999999999 8999999999999
Q ss_pred EcCCCC-CCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCC
Q 009076 323 VRRPSD-YNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 401 (544)
Q Consensus 323 v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~ 401 (544)
|.+... .......... .. ....................+++.+++..++...+..+|..+|.+..+.+.....
T Consensus 189 v~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 189 VQKAQPASQPRSELSNN-----LD-ASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred eeccccccccccccccc-----cc-hhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 998543 1110000000 00 0000000111222233445799999999999999999999999997776665533
Q ss_pred CCCcceEEEEEEcChHHHHHHH
Q 009076 402 TGNSKGYAFCVYQDLSVTDIAC 423 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~ 423 (544)
........++.+.....+..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 263 GKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred CcccccccccchhHHHhhhhhh
Confidence 2223333444444444444444
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.6e-12 Score=102.29 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=69.7
Q ss_pred HHhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009076 238 QQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 316 (544)
Q Consensus 238 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l 316 (544)
..+...+++|||+||+..++|++|.++|+.+|+|..+. .-++..+...-|||||+|.+.++|..|| -+++..|
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irrii------MGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL 103 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRII------MGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL 103 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeE------eccccCCcCccceEEEEEecchhHHHHHHHhccCcc
Confidence 34667899999999999999999999999999865421 1112222334589999999999999999 8999999
Q ss_pred CCceeEEcCCCCC
Q 009076 317 EGAPVKVRRPSDY 329 (544)
Q Consensus 317 ~g~~l~v~~~~~~ 329 (544)
..++|.|.|...+
T Consensus 104 ddr~ir~D~D~GF 116 (153)
T KOG0121|consen 104 DDRPIRIDWDAGF 116 (153)
T ss_pred cccceeeeccccc
Confidence 9999999885443
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=8.9e-13 Score=113.46 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=78.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||++|...++|.-|...|-+||.|+.|.++.+-++++++|||||+|.-.|+|.+||..||+..|.|++|+|.|+.+.
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred CC
Q 009076 445 AN 446 (544)
Q Consensus 445 ~~ 446 (544)
..
T Consensus 91 ki 92 (298)
T KOG0111|consen 91 KI 92 (298)
T ss_pred cc
Confidence 53
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.32 E-value=3.5e-11 Score=113.99 Aligned_cols=72 Identities=25% Similarity=0.458 Sum_probs=66.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
|+|||.|||.++|++.|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+..|+|..|.|+.|.|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 6899999999999999999999999999998853 477776 89999999999999999999999999999984
No 78
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.8e-12 Score=112.37 Aligned_cols=78 Identities=28% Similarity=0.540 Sum_probs=71.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
++|||+||++.+..+.|+..|++||.|++..|+.|+.+|+++||+||.|.+.++|.+|++.. +-.|+||...+..+..
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 47999999999999999999999999999999999999999999999999999999999654 5678999888877644
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=1e-11 Score=111.09 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=68.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.+|+|+||++.+|+++|+++|+.||.|.+|.|+.+. ...++|||+|.+.++|..|+ .|+|..|.++.|.|....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 589999999999999999999999999999999883 44589999999999999999 899999999999998864
No 80
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=8.2e-12 Score=93.27 Aligned_cols=71 Identities=39% Similarity=0.696 Sum_probs=66.8
Q ss_pred EcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 369 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 369 v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
|+|||..+++++|+++|+.||.|..+.+...+.++.++|+|||+|.+.++|..|+..|+|..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778899999999999999999999999999999999873
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=6.3e-12 Score=114.55 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=67.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v 323 (544)
.++|||+|||+.+|+++|++||+.||.|..+. | ......+|||||+|.+.++|..||.|+|..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~-------I--~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVE-------M--QSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------E--eecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEE
Confidence 56899999999999999999999999876543 1 11223579999999999999999999999999999999
Q ss_pred cCCCCCC
Q 009076 324 RRPSDYN 330 (544)
Q Consensus 324 ~~~~~~~ 330 (544)
.++..+.
T Consensus 75 t~a~~~~ 81 (260)
T PLN03120 75 TPAEDYQ 81 (260)
T ss_pred EeccCCC
Confidence 9877654
No 82
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.4e-12 Score=103.50 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=75.3
Q ss_pred hhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 240 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
.+...+-|||.++...+||++|.+.|..||+|+.+. +-++..+|..+|||+|+|.+.++|++|+ .+||..|.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNih------LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH------LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhccccccee------eccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 345677899999999999999999999999998876 5677788999999999999999999999 999999999
Q ss_pred ceeEEcCCCC
Q 009076 319 APVKVRRPSD 328 (544)
Q Consensus 319 ~~l~v~~~~~ 328 (544)
++|.|.|+-.
T Consensus 142 q~v~VDw~Fv 151 (170)
T KOG0130|consen 142 QNVSVDWCFV 151 (170)
T ss_pred CceeEEEEEe
Confidence 9999998643
No 83
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=2e-12 Score=120.29 Aligned_cols=191 Identities=22% Similarity=0.236 Sum_probs=129.7
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEEcCC
Q 009076 247 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRP 326 (544)
Q Consensus 247 l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v~~~ 326 (544)
|-+.|||+++|+.++.+||.+-.+|.+.+ .+.+.+....|+..|-|||.|...++|+.||..+...|+.+.|.+-++
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~---egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGT---EGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCc---cceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77889999999999999997544443211 111233333567789999999999999999988888888888888654
Q ss_pred CCCCccccccCCCCCC-CCCcccccccCCCC-CCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCC-ceE--EEEccCCC
Q 009076 327 SDYNPSLAATLGPSQP-NPNLNLAAVGLTPG-SAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP-LRG--FDLVKDRE 401 (544)
Q Consensus 327 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~--v~i~~~~~ 401 (544)
......+........+ .+.+.....+..+. .........+|-+++||+..+.|+|..+|..|.. |.. |.++.+ .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~ 319 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-G 319 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-C
Confidence 4322211111000000 00000000000000 0111112457999999999999999999999876 333 666655 4
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 402 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.|...|-|||+|.+.|.|..|....++....++-|.|--|
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 6889999999999999999999999998888999999766
No 84
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.3e-11 Score=87.50 Aligned_cols=56 Identities=25% Similarity=0.530 Sum_probs=51.4
Q ss_pred HHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 381 IRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 381 l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
|+++|++||.|..|.+.... +++|||+|.+.++|..|+..|||..|+|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998773 589999999999999999999999999999999986
No 85
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=3e-11 Score=101.43 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=103.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.+.|+|+|||.++-+.+|.++|.+||.|..|.|...+ ....||||+|++.-+|..||..-+|..++|+.|.|.|+.-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 3589999999999999999999999999999987653 2367999999999999999999999999999999999865
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee--ccCc
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--FCYK 521 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i--~~~g 521 (544)
........-.-.--.. .--.--.-.-.+..-...-+.+..+.....+ ++|+.++.+-|.|-.. ...|
T Consensus 83 gr~s~~~~G~y~gggr-gGgg~gg~rgppsrrSe~RVvVsGLp~SgSW----------QDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGR-GGGGGGGRRGPPSRRSEYRVVVSGLPPSGSW----------QDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred CCcccccccccCCCCC-CCCCCCcccCCcccccceeEEEecCCCCCch----------HHHHHHHHhhCCeeeeeeeccc
Confidence 5311000000000000 0000000000111223344445555222211 2888889888988665 5567
Q ss_pred eEEEEecCCCCC
Q 009076 522 ESGLIYTDRRLH 533 (544)
Q Consensus 522 ~a~V~f~~~~~A 533 (544)
.+.|+|...|+-
T Consensus 152 ~GvV~~~r~eDM 163 (241)
T KOG0105|consen 152 VGVVEYLRKEDM 163 (241)
T ss_pred ceeeeeeehhhH
Confidence 888998887765
No 86
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.7e-11 Score=107.83 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=75.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
+.++|-|.||+.+++|++|.+||.+||.|..++ ++.+..+|.++|||||.|.+.++|.+|+ .|||.-++.-.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy------lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVY------LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeE------EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 677899999999999999999999999998877 7888899999999999999999999999 999999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.|+..
T Consensus 262 rvEwskP 268 (270)
T KOG0122|consen 262 RVEWSKP 268 (270)
T ss_pred EEEecCC
Confidence 9999764
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=4.8e-12 Score=110.97 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v 323 (544)
-.+|||+||++.+..+.|+.+|++||+|+..+ +|.+..++++||||||.|.+.+.|..|++--.-.|+|++..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eav------vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNc 85 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAV------VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANC 85 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEE------EEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccccc
Confidence 45899999999999999999999999998876 688889999999999999999999999965666788988777
Q ss_pred cCCC
Q 009076 324 RRPS 327 (544)
Q Consensus 324 ~~~~ 327 (544)
+.+.
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 6543
No 88
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=2.5e-11 Score=90.18 Aligned_cols=61 Identities=15% Similarity=0.296 Sum_probs=54.2
Q ss_pred HHHHHHHHH----hcCCceEEE-EccCCCC--CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 378 EAQIRELLE----SFGPLRGFD-LVKDRET--GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 378 ee~l~~~f~----~~G~i~~v~-i~~~~~~--g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
+++|+++|+ +||.|..|. |+.++.+ |.++|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567778887 999999995 6666555 889999999999999999999999999999999986
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=5.7e-11 Score=89.49 Aligned_cols=74 Identities=39% Similarity=0.690 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
+|+|+|||..+++++|.++|..||.|..+.+...+.+ ...|+|||+|.+.++|..|+..+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987543 6689999999999999999999999999999999875
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.25 E-value=6.9e-11 Score=109.90 Aligned_cols=162 Identities=22% Similarity=0.240 Sum_probs=123.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH---HcCCceeCCcee
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM---ALDGIIFEGAPV 321 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al---~l~~~~l~g~~l 321 (544)
-.|.|.+|-..++|.+|.+.++.||+ |..+.....+..|.|+|.+.+.|..++ +-+...+.|+..
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~------------i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGP------------IAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCc------------eEEEEeccccceeeeeeccccchhhheehhccCcccccCchh
Confidence 36999999999999999999999996 556667778889999999999999999 345566788777
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEE--EcCCCCCCcHHHHHHHHHhcCCceEEEEccC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIF--VGGLPYYFTEAQIRELLESFGPLRGFDLVKD 399 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~ 399 (544)
.+.++..+.... ++ .....+...|+ |-|--+.+|-+.|..+|.+.|+|..|.|++.
T Consensus 100 l~NyStsq~i~R---------------------~g-~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk 157 (494)
T KOG1456|consen 100 LFNYSTSQCIER---------------------PG-DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK 157 (494)
T ss_pred hcccchhhhhcc---------------------CC-CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec
Confidence 776643221110 00 01111223444 4444566899999999999999999999876
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHhCCCee--CCeEEEEEEcCCCC
Q 009076 400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKM--GDKTLTVRRANQGA 445 (544)
Q Consensus 400 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--~g~~i~v~~~~~~~ 445 (544)
+|. .|.|||++.+.|++|..+|||..| +=++|+|.|+++..
T Consensus 158 --ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 158 --NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred --cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 333 599999999999999999999987 44789999986553
No 91
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=2.9e-11 Score=110.74 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=67.7
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeec--CCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN--HEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~--~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
....++|+|.|||+..-+.||+.+|.+||.|+++ .+.++ .+||||||.|.++++|++|- +|+|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldV----------EIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDV----------EIIFNERGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeE----------EEEeccCCCCccceEEecChhhHHHHHHHhhcceee
Confidence 3456899999999999999999999999986542 12233 47999999999999999999 99999999
Q ss_pred CceeEEcCCCCC
Q 009076 318 GAPVKVRRPSDY 329 (544)
Q Consensus 318 g~~l~v~~~~~~ 329 (544)
|++|.|..+...
T Consensus 163 GRkIEVn~ATar 174 (376)
T KOG0125|consen 163 GRKIEVNNATAR 174 (376)
T ss_pred ceEEEEeccchh
Confidence 999999876544
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.25 E-value=1.3e-11 Score=110.36 Aligned_cols=79 Identities=23% Similarity=0.240 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v 323 (544)
..+|||+||++.+|+++|++||+.||+|..+. ++ ..+..++||||+|.++++|..|+.|+|..|.+++|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~------I~---~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVE------II---RSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEE------Ee---cCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEE
Confidence 56899999999999999999999999876653 12 2255678999999999999999999999999999999
Q ss_pred cCCCCCCc
Q 009076 324 RRPSDYNP 331 (544)
Q Consensus 324 ~~~~~~~~ 331 (544)
.....+..
T Consensus 76 t~~~~y~~ 83 (243)
T PLN03121 76 TRWGQYED 83 (243)
T ss_pred EeCccccc
Confidence 87766553
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=2e-11 Score=121.01 Aligned_cols=79 Identities=37% Similarity=0.695 Sum_probs=76.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
+.|||+|+|+++++++|..+|+..|.|.+++++.|+.+|..+||||++|.+.++|..|+..|||..+.|+.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999843
No 94
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.5e-10 Score=112.88 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=116.3
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCc---EEEEEecCHHHHHHHHHcCCceeC
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK---FAFVEMRSVEEASNAMALDGIIFE 317 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg---~afV~f~~~~~A~~Al~l~~~~l~ 317 (544)
..-+++||||+||++++|+.|...|..||.++--+. + .......-..+| |+|+.|.+....+..|.-.-..-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP---~-k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWP---G-KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecC---C-CccccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 345789999999999999999999999998642220 0 011111223456 999999999988887721111111
Q ss_pred CceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHH-hcCCceEEEE
Q 009076 318 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLE-SFGPLRGFDL 396 (544)
Q Consensus 318 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~-~~G~i~~v~i 396 (544)
.--++|.-+...... .+ ...+.++............++.+||||++||--++.++|..+|+ -||.|..+-|
T Consensus 332 ~~yf~vss~~~k~k~--VQ------IrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI 403 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKE--VQ------IRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI 403 (520)
T ss_pred ceEEEEecCcccccc--ee------EEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe
Confidence 112333222111100 00 00011111111222344556778999999999999999999999 6999999999
Q ss_pred ccCCCCCCcceEEEEEEcChHHHHHHHHH
Q 009076 397 VKDRETGNSKGYAFCVYQDLSVTDIACAA 425 (544)
Q Consensus 397 ~~~~~~g~~~g~afV~f~~~e~A~~A~~~ 425 (544)
-.|++-+.++|-|-|.|.+..+-.+||.+
T Consensus 404 DtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 404 DTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99988889999999999999999999966
No 95
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=3e-11 Score=100.85 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=63.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeec-CCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN-HEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
.++|||+||+..+++.+|...|..||+|.++ ++. ...|||||+|.++.+|..|+ .|+|..|.|..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsv------------WvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSV------------WVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeE------------EEeecCCCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 6789999999999999999999999976543 332 45799999999999999999 999999999999
Q ss_pred EEcCCC
Q 009076 322 KVRRPS 327 (544)
Q Consensus 322 ~v~~~~ 327 (544)
.|+...
T Consensus 78 rVE~S~ 83 (195)
T KOG0107|consen 78 RVELST 83 (195)
T ss_pred EEEeec
Confidence 998654
No 96
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.18 E-value=1.2e-10 Score=118.17 Aligned_cols=76 Identities=21% Similarity=0.420 Sum_probs=69.0
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++||||++|+..+++.||..+|+.||. |..+.+..+++||||.+....+|.+|| +|+...+.++.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGe------------iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~ 486 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGE------------IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKT 486 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhccc------------ceeEeeccCCceeEEEEeehhHHHHHHHHHhccccccee
Confidence 35789999999999999999999999997 555667889999999999999999999 99999999999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|+|.|+..+
T Consensus 487 Iki~Wa~g~ 495 (894)
T KOG0132|consen 487 IKIAWAVGK 495 (894)
T ss_pred eEEeeeccC
Confidence 999997543
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.18 E-value=6.6e-11 Score=114.53 Aligned_cols=145 Identities=15% Similarity=0.126 Sum_probs=109.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
...|.+.+|||.+|+++|+++|+.+ .|+.+.+.+. +|+..|-|||+|.+.|++.+|| +++-..++.+-|.|--+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccCC
Confidence 3579999999999999999999998 4888777765 7999999999999999999999 5588889999999988755
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCcee-e-----
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSP-T----- 517 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~-i----- 517 (544)
....-. -.........+..|+-|..+ +- ....++|.++|+---.|.. |
T Consensus 86 ~e~d~~----------------~~~~g~~s~~~d~vVRLRGL--Pf--------scte~dI~~FFaGL~Iv~~gi~l~~d 139 (510)
T KOG4211|consen 86 AEADWV----------------MRPGGPNSSANDGVVRLRGL--PF--------SCTEEDIVEFFAGLEIVPDGILLPMD 139 (510)
T ss_pred cccccc----------------ccCCCCCCCCCCceEEecCC--Cc--------cCcHHHHHHHhcCCcccccceeeecc
Confidence 433100 00011122346778888877 22 2233589999987655555 2
Q ss_pred ---ccCceEEEEecCCCCCCCceE
Q 009076 518 ---FCYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 518 ---~~~g~a~V~f~~~~~A~a~~~ 538 (544)
...|.|||+|.+.+.|+.|+.
T Consensus 140 ~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 140 QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCCCcccceEEEecCHHHHHHHHH
Confidence 678999999999999977664
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.3e-12 Score=109.37 Aligned_cols=84 Identities=26% Similarity=0.412 Sum_probs=76.1
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
...+.-|||||||+.+||.||.-.|++||.|+.++ +|.+..+|.++||||+.|.+......|+ .|||..|.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin------LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN------LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEE------EEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 34566799999999999999999999999998887 7889999999999999999999999999 9999999999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
.|+|.....+.
T Consensus 106 tirVDHv~~Yk 116 (219)
T KOG0126|consen 106 TIRVDHVSNYK 116 (219)
T ss_pred eEEeeeccccc
Confidence 99997554443
No 99
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.16 E-value=1.1e-11 Score=92.46 Aligned_cols=69 Identities=30% Similarity=0.547 Sum_probs=53.9
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 247 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 247 l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
|||+|||+.+++++|.++|+.||.|..+. +.....+..+++|||+|.+.++|..|+ .+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~-------~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVR-------LIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEE-------EEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEE-------EEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999998654332 111111445899999999999999999 7777999999874
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=1.4e-10 Score=112.96 Aligned_cols=80 Identities=40% Similarity=0.766 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
..+|||+|||..+++++|.++|..||.|..|.+..++.+|.++|+|||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999753
No 101
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=5.7e-11 Score=101.68 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
..+|.|-||-+.++.++|+.+|++||.|-.+. +-.+..+..++|||||.|....+|+.|| +|+|.+|+|+.|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVy------IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVY------IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCccccee------cccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 45799999999999999999999999875554 5567778899999999999999999999 9999999999999
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|+.+.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 98754
No 102
>PLN03213 repressor of silencing 3; Provisional
Probab=99.12 E-value=7.8e-11 Score=113.33 Aligned_cols=74 Identities=16% Similarity=0.386 Sum_probs=64.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCH--HHHHHHH-HcCCceeCCce
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSV--EEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~--~~A~~Al-~l~~~~l~g~~ 320 (544)
..+||||||++.+|+++|..+|..||.|..+. |+ ..+| +|||||+|... .++.+|+ .|||..|.|+.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVE-------Ip-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVE-------FV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-------Ee-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 45899999999999999999999999987764 22 3344 99999999987 7899999 99999999999
Q ss_pred eEEcCCC
Q 009076 321 VKVRRPS 327 (544)
Q Consensus 321 l~v~~~~ 327 (544)
|+|..+.
T Consensus 80 LKVNKAK 86 (759)
T PLN03213 80 LRLEKAK 86 (759)
T ss_pred eEEeecc
Confidence 9998665
No 103
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3e-11 Score=104.18 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=73.3
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..-++|||++|...+|+.-|...|-+||.|..+. ..++-...+.+|||||+|...|+|.+|| .||+..|.|+.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIq------iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt 81 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQ------IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT 81 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcc------cccchhcccccceeEEEeeccchhHHHhhcCchhhhccee
Confidence 3568999999999999999999999999998765 4566677889999999999999999999 99999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|+|.++.+
T Consensus 82 irVN~AkP 89 (298)
T KOG0111|consen 82 IRVNLAKP 89 (298)
T ss_pred EEEeecCC
Confidence 99987654
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.5e-10 Score=104.77 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=73.0
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
.+.+||||+-|+.+++|..|+..|+.||+|+.+. +|.+..++.++|||||+|.+..+..+|. ..+|.+|.|+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir------lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR------LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEE------EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 3568999999999999999999999999999887 6888899999999999999999999999 89999999999
Q ss_pred eEEcC
Q 009076 321 VKVRR 325 (544)
Q Consensus 321 l~v~~ 325 (544)
|.|..
T Consensus 173 i~VDv 177 (335)
T KOG0113|consen 173 ILVDV 177 (335)
T ss_pred EEEEe
Confidence 99965
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=2.8e-10 Score=85.09 Aligned_cols=71 Identities=34% Similarity=0.585 Sum_probs=59.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
+|+|+|||..++.++|.++|..||.+..+. +.... +.++++|||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~-------~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVK-------IPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEE-------EecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999765432 11111 456799999999999999999 899999999998873
No 106
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.07 E-value=4.2e-10 Score=99.71 Aligned_cols=136 Identities=21% Similarity=0.314 Sum_probs=109.0
Q ss_pred eEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCC
Q 009076 283 VVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL 361 (544)
Q Consensus 283 v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (544)
++...-+.-.+++|+.|.....-.++- .-++..+.-.+|++.....+.... ...-.
T Consensus 131 ~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPs-----------------------l~ew~ 187 (290)
T KOG0226|consen 131 LVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPS-----------------------LAEWD 187 (290)
T ss_pred hhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcc-----------------------cccCc
Confidence 333444556789999999888877777 667777776667776544433211 11111
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+.-.+||++.|..+++.+.|...|.+|-.....++++++.||+++||+||.|.+.+++..|+..|+|..++.++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 22348999999999999999999999999999999999999999999999999999999999999999999999998765
No 107
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.5e-10 Score=85.11 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=65.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC---CCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH---EKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~---~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
..+-|||.|||+.+|.++..++|..||. |..+.+|. .+|.|||.|.+..+|.+|+ .|+|..+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~------------IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGT------------IRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccc------------eEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 3567999999999999999999999996 55566654 5899999999999999999 999999999
Q ss_pred ceeEEcCCCC
Q 009076 319 APVKVRRPSD 328 (544)
Q Consensus 319 ~~l~v~~~~~ 328 (544)
+.|.|-+.+.
T Consensus 85 ryl~vlyyq~ 94 (124)
T KOG0114|consen 85 RYLVVLYYQP 94 (124)
T ss_pred ceEEEEecCH
Confidence 9999987553
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=9.8e-12 Score=107.27 Aligned_cols=144 Identities=20% Similarity=0.288 Sum_probs=116.7
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+||-..++|+-|.++|.+.|+|..+. |-+...+..+ ||||.|.+......|+ .+||..+.+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~-------ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVG-------IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEe-------CCCCccCCCc-eeeeecccccchhhhhhhcccchhccch
Confidence 3467899999999999999999999999765432 2233334445 9999999999999999 89999999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcC----CCCCCcHHHHHHHHHhcCCceEEEE
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGG----LPYYFTEAQIRELLESFGPLRGFDL 396 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~~ee~l~~~f~~~G~i~~v~i 396 (544)
++|+ ++.++ |...++++.+...|+.-|.+..+++
T Consensus 79 ~q~~------------------------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~ 116 (267)
T KOG4454|consen 79 EQRT------------------------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRI 116 (267)
T ss_pred hhcc------------------------------------------cccCCCcchhhhhcchhhheeeecccCCCCCccc
Confidence 9984 45555 6778899999999999999999999
Q ss_pred ccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 397 ~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
..+. +|.++.++|+.+......-.|+....+..+.-+.+
T Consensus 117 ~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 117 PTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred cccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 9885 58888899999988877777777766655433333
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.05 E-value=2.5e-09 Score=107.33 Aligned_cols=197 Identities=14% Similarity=0.070 Sum_probs=137.6
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
.+.+.+-+.+++++..+.|++.||...- | ...++.++..-+...|.++|.|.....+++|++.|..++-.+.+
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~-~------~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~ 381 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRN-A------QSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPF 381 (944)
T ss_pred chhheeeecccccccccchhhhhcCccc-c------cccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcce
Confidence 3556778889999999999999988541 1 11112222222334799999999999999999999999999999
Q ss_pred EEcCCCCCCccccccCCCCCCCCCc--------ccccccCCCCCC--CCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCc
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNL--------NLAAVGLTPGSA--GGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i 391 (544)
.|..+.+.....+............ ........++.. .......+|||..||..+++.++.++|...-.|
T Consensus 382 q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~V 461 (944)
T KOG4307|consen 382 QTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAV 461 (944)
T ss_pred eecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhh
Confidence 9987655443222221111110000 000001111111 222334689999999999999999999998788
Q ss_pred eE-EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 392 RG-FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 392 ~~-v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
++ |.|... .+++.++.|||+|..++++..|+..-+.+.++.+.|.|.-......
T Consensus 462 ed~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 462 EDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred hheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 77 666555 4788899999999999999999988889999999999988755544
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=1.3e-10 Score=115.13 Aligned_cols=80 Identities=28% Similarity=0.438 Sum_probs=75.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
+.|||||+|+.+++++|..+|+..|.|++++ .+.+..+|..+|||||+|.+.+.|..|+ .|||..+.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~------~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFR------LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceee------ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 7899999999999999999999999999887 6888889999999999999999999999 99999999999999
Q ss_pred cCCCCCC
Q 009076 324 RRPSDYN 330 (544)
Q Consensus 324 ~~~~~~~ 330 (544)
.|+....
T Consensus 93 ~~~~~~~ 99 (435)
T KOG0108|consen 93 NYASNRK 99 (435)
T ss_pred ecccccc
Confidence 9876544
No 111
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.7e-10 Score=104.41 Aligned_cols=81 Identities=21% Similarity=0.416 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.++|||--|.+-++.++|.-+|+.||+|.++.|+++..||.+-.||||+|++.+++.+|.-+|++..|+.+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009076 442 N 442 (544)
Q Consensus 442 ~ 442 (544)
+
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 3
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.02 E-value=8.4e-10 Score=95.15 Aligned_cols=80 Identities=29% Similarity=0.513 Sum_probs=74.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhc-CCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESF-GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
..++|..+|..+.+..|...|.+| |.|..+++.+++.||.++|||||+|++.+.|.-|.+.||+..|.|+.|.|.+..+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 479999999999999999999998 6788888889999999999999999999999999999999999999999999843
Q ss_pred C
Q 009076 444 G 444 (544)
Q Consensus 444 ~ 444 (544)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 3
No 113
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=8.1e-10 Score=98.17 Aligned_cols=143 Identities=15% Similarity=0.253 Sum_probs=104.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
.+||++||+.+.+.+|..+|..||.|..|.+. .||+||+|.+..+|.-|+..|||..|.|..+.|.|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 68999999999999999999999999998885 4589999999999999999999999999889999986421
Q ss_pred CCC-C---hhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-ccC
Q 009076 446 NQP-K---PEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-FCY 520 (544)
Q Consensus 446 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-~~~ 520 (544)
-.. . ...... +. ...........+.+.|+-... -..+|+..|+++|.+... ...
T Consensus 75 ~~~g~~~~g~r~~~---------~~--~~~~p~~s~~r~~~~~~~~r~----------~~qdl~d~~~~~g~~~~~~~~~ 133 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSD---------SR--RYRPPSRTHFRLIVRNLSLRV----------SWQDLKDHFRPAGEVTYVDARR 133 (216)
T ss_pred cccCCCCCCCccch---------hh--ccCCcccccceeeeccchhhh----------hHHHHhhhhcccCCCchhhhhc
Confidence 100 0 000000 00 011122333444454441111 124899999999999555 678
Q ss_pred ceEEEEecCCCCCCCce
Q 009076 521 KESGLIYTDRRLHNPQF 537 (544)
Q Consensus 521 g~a~V~f~~~~~A~a~~ 537 (544)
+++||+|.+.++|..++
T Consensus 134 ~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 134 NFAFVEFSEQEDAKRAL 150 (216)
T ss_pred cccceeehhhhhhhhcc
Confidence 99999999999997665
No 114
>smart00360 RRM RNA recognition motif.
Probab=98.99 E-value=7.8e-10 Score=82.34 Aligned_cols=70 Identities=37% Similarity=0.575 Sum_probs=57.6
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 249 VGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 249 V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
|+|||..+++++|.++|.+||.|..+. .......+.++|+|||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~------i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVR------LVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEE------EEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999875543 1111124566899999999999999999 899999999998873
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=9.1e-11 Score=120.62 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=130.4
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 318 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g 318 (544)
...+..+++||.||++.+.+.+|...|..+|.+..+. +++....+.-+|+|||+|..+++|.+|+.+....+.|
T Consensus 662 n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vq------i~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 662 NEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQ------IVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred hHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHH------HHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4456778999999999999999999999998765433 2333345566899999999999999999777666655
Q ss_pred ceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEcc
Q 009076 319 APVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 398 (544)
Q Consensus 319 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~ 398 (544)
+ ..|+|.|+|+..|.+.|+.+|.++|.++++.++.
T Consensus 736 K---------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt 770 (881)
T KOG0128|consen 736 K---------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT 770 (881)
T ss_pred h---------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhh
Confidence 1 1689999999999999999999999999999877
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 399 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
.+ .|+++|.|||.|.+..+|.+++..+.+..+.-+.+.|..+++..
T Consensus 771 ~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 771 VR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 74 79999999999999999999998888888888888888866543
No 116
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=2.1e-09 Score=80.75 Aligned_cols=72 Identities=33% Similarity=0.562 Sum_probs=59.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
+|+|+|||+.+++++|.++|..||.|..+. +.........++|||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~-------~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVR-------IVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEE-------EeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999998764432 111112245799999999999999999 899999999999885
No 117
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=9.1e-10 Score=97.98 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=74.5
Q ss_pred hhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 240 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
...+.|.|||..||...++.+|.++|-+||.|++.+ +.++..++.+|.||||.|.++..|++|| .|||+.|+-
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaK------VFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAK------VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeee------eeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 345789999999999999999999999999998876 7888999999999999999999999999 999999999
Q ss_pred ceeEEcC
Q 009076 319 APVKVRR 325 (544)
Q Consensus 319 ~~l~v~~ 325 (544)
+.|+|+.
T Consensus 355 KRLKVQL 361 (371)
T KOG0146|consen 355 KRLKVQL 361 (371)
T ss_pred hhhhhhh
Confidence 9999864
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.91 E-value=1.1e-09 Score=103.95 Aligned_cols=176 Identities=19% Similarity=0.226 Sum_probs=133.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCc-eeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGI-IFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~-~l~g~~l 321 (544)
..+++|++++...+.+.++..++..+|.+..+. .........++|+++|.|...+.+..|+.+.+. .+.+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~------~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDAR------SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccch------hhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 356799999999999999999999998654332 222234567899999999999999999976664 5555554
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEE-EcCCCCCCcHHHHHHHHHhcCCceEEEEccCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIF-VGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 400 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~ 400 (544)
............+. ........+..+++ |.||+..+++++|+.+|..+|.|..++++...
T Consensus 161 ~~dl~~~~~~~~~n-------------------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 161 EKDLNTRRGLRPKN-------------------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE 221 (285)
T ss_pred cCcccccccccccc-------------------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCC
Confidence 44332222110000 00111112223545 99999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 401 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 401 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
.+|...|+|||.|.....+..|+.. +...++++++.|.+....
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 9999999999999999999999977 899999999999998444
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=7.8e-10 Score=114.35 Aligned_cols=166 Identities=19% Similarity=0.338 Sum_probs=132.6
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
......++||++||+..+++.+|+..|..+|.|..+. |....++....||||.|.+...+-.|+ .+.+..|.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VD-------iKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVD-------IKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccc-------cccCCCCcccchhhhhhhccccCcccchhhcCCccc
Confidence 3456788999999999999999999999999875442 333335556679999999999999999 88887776
Q ss_pred CceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEc
Q 009076 318 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397 (544)
Q Consensus 318 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~ 397 (544)
...+++.+... .....+.+++++|...+....|..+|..||.|..|.+-
T Consensus 440 ~g~~r~glG~~-------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~ 488 (975)
T KOG0112|consen 440 NGTHRIGLGQP-------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR 488 (975)
T ss_pred cCccccccccc-------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc
Confidence 55555543211 11223479999999999999999999999999998775
Q ss_pred cCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcCCCCCCC
Q 009076 398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGANQP 448 (544)
Q Consensus 398 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~~~~~~~ 448 (544)
.. .-||||+|.+...|+.|+..|-|..|+| +.|.|.|+......|
T Consensus 489 hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 489 HG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred cC------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCCh
Confidence 44 4599999999999999999999999976 779999996665443
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.84 E-value=6.5e-09 Score=105.89 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=71.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
+||||++|+..++|.||..+|+.||.|.+|.++.. +|||||.+....+|.+|+.+|++..+.++.|+|.|+.-+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 58999999999999999999999999999999877 899999999999999999999999999999999999555
Q ss_pred CC
Q 009076 445 AN 446 (544)
Q Consensus 445 ~~ 446 (544)
..
T Consensus 496 G~ 497 (894)
T KOG0132|consen 496 GP 497 (894)
T ss_pred Cc
Confidence 43
No 121
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=8.5e-09 Score=101.79 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=115.8
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
......++|+|-|||..+++++|..+|+.||+|.++. .+....|.+||+|.++-+|+.|+ +|++..|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-----------~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-----------ETPNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-----------cccccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 3345678999999999999999999999999986532 34556799999999999999999 99999999
Q ss_pred CceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEc
Q 009076 318 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397 (544)
Q Consensus 318 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~ 397 (544)
|+.|+............. ...-+......+......... -..+|. .|++.....-+...|+-+|.+.. ..
T Consensus 139 ~~~~k~~~~~~~~~~~~~------~~~~~~~~~~p~a~s~pgg~~-~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~- 208 (549)
T KOG4660|consen 139 GKRIKRPGGARRAMGLQS------GTSFLNHFGSPLANSPPGGWP-RGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE- 208 (549)
T ss_pred hhhhcCCCcccccchhcc------cchhhhhccchhhcCCCCCCc-CCccee-eeccchhhhhhhcchhccCcccc-cc-
Confidence 999982211111100000 000000000000000111111 112332 28888888777777788887765 22
Q ss_pred cCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 398 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
++.-...-|++|.+..++..++..+ |..+.+....++++..
T Consensus 209 ----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 209 ----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 2222346789999999886666544 7778887777777644
No 122
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.79 E-value=1.8e-08 Score=87.66 Aligned_cols=81 Identities=26% Similarity=0.346 Sum_probs=66.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCC-CcceEEEEEEcChHHHHHHHHHhCCCee---CCeEEEEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG-NSKGYAFCVYQDLSVTDIACAALNGIKM---GDKTLTVR 439 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~~i~v~ 439 (544)
-++|||.+||.++..-+|+.+|..|-.-+...|......+ .-+-+|||.|.+..+|..|+.+|||..| .+.+|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4689999999999999999999998777776664432111 2246899999999999999999999999 57899998
Q ss_pred EcCCC
Q 009076 440 RANQG 444 (544)
Q Consensus 440 ~~~~~ 444 (544)
+++..
T Consensus 114 lAKSN 118 (284)
T KOG1457|consen 114 LAKSN 118 (284)
T ss_pred ehhcC
Confidence 87544
No 123
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.78 E-value=1.1e-08 Score=72.38 Aligned_cols=53 Identities=42% Similarity=0.617 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceEEEeecCCC-cEEEEEecCHHHHHHHH-HcCCceeCCceeEEcC
Q 009076 261 VATFFSQVMAAIGGNTAGPGDAVVNVYINHEK-KFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRR 325 (544)
Q Consensus 261 L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~k-g~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~~ 325 (544)
|.++|++||+ |..+.+...+ ++|||+|.+.++|..|+ .|||..|.|++|+|.+
T Consensus 1 L~~~f~~fG~------------V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGE------------VKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-------------EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCccc------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 6789999996 5555555555 99999999999999999 8999999999999976
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=2.7e-08 Score=92.46 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHH-hCCCeeCCeEEEEEEcC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA-LNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~-l~g~~~~g~~i~v~~~~ 442 (544)
-.+|||++|...++|.+|+++|.+||.|.+|.++.. +++|||+|.+.+.|+.|... +|...|.|..|.|.|..
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 358999999999999999999999999999999877 67999999999999988755 46777899999999997
Q ss_pred C
Q 009076 443 Q 443 (544)
Q Consensus 443 ~ 443 (544)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 6
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.74 E-value=1e-08 Score=96.39 Aligned_cols=179 Identities=16% Similarity=0.114 Sum_probs=120.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEEcC
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 325 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v~~ 325 (544)
.|.|.||.+.+|.++++.||...|.|-.+.+.+. +.++.+......|||.|.+...+..|..|.++.|-++.|.|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~---~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPN---VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCC---CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 5999999999999999999999999988765543 3333445556799999999999999999999888888887754
Q ss_pred CCC-CCcccc--ccCCCCCCCCCcc-----------cccccCCCCCC-------------CCCCCCCEEEEcCCCCCCcH
Q 009076 326 PSD-YNPSLA--ATLGPSQPNPNLN-----------LAAVGLTPGSA-------------GGLEGPDRIFVGGLPYYFTE 378 (544)
Q Consensus 326 ~~~-~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~~~~-------------~~~~~~~~l~v~nl~~~~~e 378 (544)
..+ ..+... ...+.....+.+. +...+..+... ...+...+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 322 111110 0000000000000 00000000000 00011147999999999999
Q ss_pred HHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC
Q 009076 379 AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 432 (544)
Q Consensus 379 e~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 432 (544)
.++.++|..+|.|....+.-. ...-+|-|+|........|+ .++|+.+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 999999999999987766433 33557889999998888888 56788876
No 126
>smart00361 RRM_1 RNA recognition motif.
Probab=98.73 E-value=1.3e-08 Score=75.46 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=49.3
Q ss_pred HHHHHHHHH----HHHHhhcCCCCCCCCceEEEee--cCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 258 EQSVATFFS----QVMAAIGGNTAGPGDAVVNVYI--NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 258 e~~L~~~f~----~~G~i~~~~~~~~~~~v~~~~~--~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
+++|+++|. .||.|..+. .++++..+ +.++|||||+|.+.++|.+|+ .|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~-----~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKIN-----KIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEE-----EEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999876542 01222333 778999999999999999999 99999999999986
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.69 E-value=4.1e-08 Score=96.48 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=74.2
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
....+.|||.+|...+-..+|..||++||.|++.+ +|.+..+...+.|+||.|.+.++|.+|| .|+...|.|+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAK------VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAK------VVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceecee------eeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 45678999999999999999999999999998876 5667777778999999999999999999 9999999999
Q ss_pred eeEEcCCCCC
Q 009076 320 PVKVRRPSDY 329 (544)
Q Consensus 320 ~l~v~~~~~~ 329 (544)
.|.|..++..
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999876543
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.66 E-value=1.4e-07 Score=92.85 Aligned_cols=82 Identities=15% Similarity=0.327 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
...+|+|.+|...+-..+|+.+|++||+|+..+|+.+..+--.++|+||.+.+.++|.++|..||-..|.|+.|.|..+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34579999999999999999999999999999999876555568999999999999999999999999999999999874
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 33
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.64 E-value=1.5e-07 Score=85.99 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.+.+|.|.|||+.++++||+++|..||.++.+.|..+ ..|.+.|+|-|.|...++|.+|++.+||..++|+.|.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3457999999999999999999999998888888877 589999999999999999999999999999999999998875
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
....
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 5543
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.4e-08 Score=91.67 Aligned_cols=82 Identities=15% Similarity=0.330 Sum_probs=75.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
+...|||--|.+-+|.++|.-+|+.||.|.+|. +|.+..+|.+-.||||+|.+.+++++|. +|++..|.++.|
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sce------VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCE------VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeee------EEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 456899999999999999999999999999987 7889999999999999999999999999 999999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++..-.
T Consensus 312 HVDFSQSVs 320 (479)
T KOG0415|consen 312 HVDFSQSVS 320 (479)
T ss_pred Eeehhhhhh
Confidence 998765433
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=9.7e-08 Score=88.81 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=66.3
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH--HcCCceeCC
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM--ALDGIIFEG 318 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al--~l~~~~l~g 318 (544)
.....+|||++|-..+++.+|+++|.+||+| ..+..-..+++|||+|.+.+.|+.|. .+|...|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGei------------rsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEI------------RSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCe------------eeEEeecccccceeeehhhHHHHHHHHhhcceeeecc
Confidence 3456789999999999999999999999975 44555667789999999999999999 678888999
Q ss_pred ceeEEcCCCC
Q 009076 319 APVKVRRPSD 328 (544)
Q Consensus 319 ~~l~v~~~~~ 328 (544)
+.|+|.|...
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 9999999766
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=4.7e-09 Score=108.31 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=150.2
Q ss_pred hccceEEEcCCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 242 RHARRVYVGGLPPTANEQ-SVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~-~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
-..+.+.+.++.+..... .+...|..+|.|..++.. +..... ...++++++.....++.|....+..+.++
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p-------~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~ 641 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGP-------KRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANR 641 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCc-------cccccccccchhhhhhccccchhhcccccccccCCc
Confidence 345678888888877544 678899999987766522 111222 23388999999999999998888888888
Q ss_pred eeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccC
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 399 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~ 399 (544)
.+.|..+........ .... ....-...++||.||+..+.+++|...|.++|.+..+.+...
T Consensus 642 ~~av~~ad~~~~~~~-----~kvs--------------~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h 702 (881)
T KOG0128|consen 642 SAAVGLADAEEKEEN-----FKVS--------------PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH 702 (881)
T ss_pred cccCCCCCchhhhhc-----cCcC--------------chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHH
Confidence 777754332221000 0000 000001136899999999999999999999999988888766
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcce
Q 009076 400 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKV 479 (544)
Q Consensus 400 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (544)
...+.-+|+|||+|...+.|.+|+....+..++...|.|.=.
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~-------------------------------------- 744 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGP-------------------------------------- 744 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCC--------------------------------------
Confidence 667888999999999999999999666666655222222111
Q ss_pred eEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee--------ccCceEEEEecCCCCCCCc
Q 009076 480 VCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQ 536 (544)
Q Consensus 480 ~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i--------~~~g~a~V~f~~~~~A~a~ 536 (544)
+- .-+.++++.+|.++|.++++ ..+|.|||.|.+..+|...
T Consensus 745 --------pf--------~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 745 --------PF--------QGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred --------CC--------CCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhh
Confidence 00 00113789999999999988 6789999999999988543
No 133
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=3.1e-07 Score=92.99 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCC---CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE---TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
.+++|||+||++.++++.|...|..||+|..|+|++... ......|+||-|.+..+|.+|+..|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 345799999999999999999999999999999998742 23456799999999999999999999999999999999
Q ss_pred EcCCCC
Q 009076 440 RANQGA 445 (544)
Q Consensus 440 ~~~~~~ 445 (544)
|+..-.
T Consensus 253 Wgk~V~ 258 (877)
T KOG0151|consen 253 WGKAVP 258 (877)
T ss_pred cccccc
Confidence 985444
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.48 E-value=1.2e-06 Score=68.11 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=69.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHh--cCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC----CeEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG----DKTLTV 438 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~----g~~i~v 438 (544)
++|.|+|||...+.++|.+++.. .|....+.++.|-.++.+.|||||-|.+++.|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 48999999999999999999976 456777888888888899999999999999999999999999884 688899
Q ss_pred EEcC
Q 009076 439 RRAN 442 (544)
Q Consensus 439 ~~~~ 442 (544)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 9984
No 135
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.48 E-value=1.1e-07 Score=82.20 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=63.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHH-HHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQV-MAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~-G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.-++|..+|..+.+.+|..+|.+| |.+..+. .-.+..+|.++|||||+|.+.+.|.-|- .||+..|+|+-|.
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r------lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFR------LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEE------eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 359999999999999999999999 4443322 1245568999999999999999999999 9999999999988
Q ss_pred EcC
Q 009076 323 VRR 325 (544)
Q Consensus 323 v~~ 325 (544)
+..
T Consensus 124 c~v 126 (214)
T KOG4208|consen 124 CHV 126 (214)
T ss_pred eEE
Confidence 875
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1.1e-07 Score=82.62 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=69.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.+|||.||...++|+-|.++|-+.|+|..|.|..+. .++.+ ||||.|.++....-|++.|||..+.+..|.|++-.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 589999999999999999999999999999998874 55556 99999999999999999999999999999998853
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.42 E-value=9.8e-06 Score=82.15 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
++|-|.|+|++++-+||.++|..|-.+-.-.+++..+.|..+|-|.|.|++.++|..|...|++..|..+.|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4899999999999999999999998776544555557899999999999999999999999999999999998864
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.42 E-value=3.3e-07 Score=84.11 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
...++|+|+...++.++|..+|+.||.|..+.|+.+...|.++||+||+|.+.+.+..|+. |+|..|.|+.|.|.+..
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 3589999999999999999999999999999999998888899999999999999999996 99999999999999873
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=2.3e-07 Score=91.93 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=63.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
.+|+|-|||..+++++|+.+|+.||.|..|..-.. ..|.+||+|.++-+|++|+++|++..+.|+.|+
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 47999999999999999999999999999766554 489999999999999999999999999999999
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.29 E-value=3.2e-06 Score=62.17 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=48.0
Q ss_pred EEEEcCCCCCCcHH----HHHHHHHhcCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 366 RIFVGGLPYYFTEA----QIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 366 ~l~v~nl~~~~~ee----~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
.|+|.|||.+.+.. -|+.++..+|. |..| . .+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|.|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 69999999988764 56667777775 6555 1 36899999999999999999999999999999999
Q ss_pred cCCC
Q 009076 441 ANQG 444 (544)
Q Consensus 441 ~~~~ 444 (544)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8444
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.26 E-value=1.8e-06 Score=85.58 Aligned_cols=77 Identities=23% Similarity=0.432 Sum_probs=65.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..|||.|||.+++..+|.++|..||.|+...|..-...+...+||||+|.+.++++.||.+ +-..++++.|.|.--.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3599999999999999999999999999987765432344448999999999999999966 5888999999997653
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.26 E-value=7.3e-06 Score=74.98 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=64.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
..+|+|.|||..+++.||+++|..||.++.. .|-....|.+.|+|-|.|...++|..|| .++++.+.|+.|+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~-------~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk 155 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRV-------AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK 155 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEE-------eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence 4579999999999999999999999855321 1222235667899999999999999999 9999999999999
Q ss_pred EcCCCC
Q 009076 323 VRRPSD 328 (544)
Q Consensus 323 v~~~~~ 328 (544)
+.....
T Consensus 156 ~~~i~~ 161 (243)
T KOG0533|consen 156 IEIISS 161 (243)
T ss_pred eEEecC
Confidence 875443
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.24 E-value=9.8e-08 Score=90.66 Aligned_cols=151 Identities=19% Similarity=0.364 Sum_probs=118.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCC-ceeCCceeE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG-IIFEGAPVK 322 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~-~~l~g~~l~ 322 (544)
.+||++||.+.++..+|..+|... .+.+.+ .+....||+||.+.+...|.+|+ .++| ..+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g------~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSG------QFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCc------ceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 369999999999999999998865 112222 22234689999999999999999 7887 458999998
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|...-... ...+.+.|.|+|+..-++.|..++..||.+..+..+..
T Consensus 70 ~~~sv~kk-------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt--- 115 (584)
T KOG2193|consen 70 VEHSVPKK-------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT--- 115 (584)
T ss_pred ccchhhHH-------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---
Confidence 86432111 01135889999999999999999999999999876432
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..-.-..-|+|.+.+.+..||..|+|..|....++|.|.
T Consensus 116 ~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 116 DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 111334458899999999999999999999999999997
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=4.4e-07 Score=94.47 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=104.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
+.+||++||+..+++.+|+..|..+|.|..|.|.... -+...-+|||.|.+...+-.|+..|.+..|..-.+.+.+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 3589999999999999999999999999999998763 233345899999999999999999999999777777777633
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee---ccC
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---FCY 520 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i---~~~ 520 (544)
+. ++++-+++..+..+. .. ..+..+|..||.|..| .+.
T Consensus 451 ks-----------------------------t~ttr~~sgglg~w~---p~-------~~l~r~fd~fGpir~Idy~hgq 491 (975)
T KOG0112|consen 451 KS-----------------------------TPTTRLQSGGLGPWS---PV-------SRLNREFDRFGPIRIIDYRHGQ 491 (975)
T ss_pred cc-----------------------------ccceeeccCCCCCCC---hH-------HHHHHHhhccCcceeeecccCC
Confidence 21 122233333332211 11 2788899999999999 788
Q ss_pred ceEEEEecCCCCCCCce
Q 009076 521 KESGLIYTDRRLHNPQF 537 (544)
Q Consensus 521 g~a~V~f~~~~~A~a~~ 537 (544)
-+|||.|++...|.+++
T Consensus 492 ~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 492 PYAYIQYESPPAAQAAT 508 (975)
T ss_pred cceeeecccCccchhhH
Confidence 99999999999997764
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.16 E-value=4e-06 Score=85.13 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=66.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeec----CCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN----HEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
...|||+||++.++++.|...|..||+|.++. |....+. ..+.||||-|.+..+|++|+ .|+|+.+.+
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvK-------imwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVK-------IMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCccccee-------eecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 34599999999999999999999999987654 3333322 34679999999999999999 999999999
Q ss_pred ceeEEcCCCC
Q 009076 319 APVKVRRPSD 328 (544)
Q Consensus 319 ~~l~v~~~~~ 328 (544)
..+++.|...
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999754
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.16 E-value=4.8e-06 Score=82.57 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=63.1
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
....+|||.|||+++++.+|.++|..||+|+... +.+...-+...+||||+|.+.+++..|+..+...+++++|
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~------I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl 359 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGG------IQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKL 359 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccc------eEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeE
Confidence 3445699999999999999999999999987643 1111112344499999999999999999777999999999
Q ss_pred EEcC
Q 009076 322 KVRR 325 (544)
Q Consensus 322 ~v~~ 325 (544)
.|..
T Consensus 360 ~Vee 363 (419)
T KOG0116|consen 360 NVEE 363 (419)
T ss_pred EEEe
Confidence 9964
No 147
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.03 E-value=1.2e-05 Score=73.21 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=59.8
Q ss_pred EEEEcCC--CCCC---cHHHHHHHHHhcCCceEEEEccCCCCCCc-ceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 366 RIFVGGL--PYYF---TEAQIRELLESFGPLRGFDLVKDRETGNS-KGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 366 ~l~v~nl--~~~~---~ee~l~~~f~~~G~i~~v~i~~~~~~g~~-~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
+|++.|+ +..+ -+++++++|++||.|..|.|...+..-.. .--.||+|..+++|.+|+..|||++|+|+.+...
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 4666666 2223 35789999999999999888766422211 1237999999999999999999999999999999
Q ss_pred EcC
Q 009076 440 RAN 442 (544)
Q Consensus 440 ~~~ 442 (544)
|.+
T Consensus 363 Fyn 365 (378)
T KOG1996|consen 363 FYN 365 (378)
T ss_pred ecc
Confidence 874
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.00 E-value=9.6e-06 Score=64.86 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=45.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC-----CCeeCCeEEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN-----GIKMGDKTLTVR 439 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~-----g~~~~g~~i~v~ 439 (544)
+.|+|.+++..++.++|+++|+.||.|..|.+... ...|||.|.+.+.|+.|+.++. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47899999999999999999999999999999776 4489999999999999998874 345666666665
Q ss_pred Ec
Q 009076 440 RA 441 (544)
Q Consensus 440 ~~ 441 (544)
..
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.95 E-value=4.6e-06 Score=76.60 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=70.8
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 318 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g 318 (544)
+.......+||+|+.+.+|.++|...|+.||.|..+. +..+...+..+|||||+|.+.+.+..|+.|++..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~t------i~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~ 169 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVT------VPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG 169 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCcccee------eeccccCCCcceeEEEecccHhhhHHHhhcCCccccc
Confidence 4455678899999999999999999999999875443 3445556678999999999999999999999999999
Q ss_pred ceeEEcCCC
Q 009076 319 APVKVRRPS 327 (544)
Q Consensus 319 ~~l~v~~~~ 327 (544)
+.+.|.+..
T Consensus 170 ~~i~vt~~r 178 (231)
T KOG4209|consen 170 PAIEVTLKR 178 (231)
T ss_pred ccceeeeee
Confidence 999997643
No 150
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.92 E-value=1.2e-05 Score=71.99 Aligned_cols=77 Identities=21% Similarity=0.394 Sum_probs=69.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..-+||.+.|-..++.+.|...|..|-.....+ +|.+..+++++||+||.|.++.++..|| +|+|..++.++|
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~ak------viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAK------VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhcc------ccccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 345899999999999999999999987665554 7889999999999999999999999999 999999999999
Q ss_pred EEcC
Q 009076 322 KVRR 325 (544)
Q Consensus 322 ~v~~ 325 (544)
++..
T Consensus 263 klRk 266 (290)
T KOG0226|consen 263 KLRK 266 (290)
T ss_pred Hhhh
Confidence 9864
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.91 E-value=3.2e-05 Score=60.23 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=59.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC----Cc
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE----GA 319 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~----g~ 319 (544)
.||+|.|||...|.++|.+++.... .+.. .=.-+.++.....+.|||||.|.+++.|.... .++|..+. .+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~y--DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKY--DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcc--eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 4799999999999999999998752 1110 00113445556778999999999999999999 99998875 45
Q ss_pred eeEEcCCC
Q 009076 320 PVKVRRPS 327 (544)
Q Consensus 320 ~l~v~~~~ 327 (544)
.+.|.++.
T Consensus 78 vc~i~yAr 85 (97)
T PF04059_consen 78 VCEISYAR 85 (97)
T ss_pred EEEEehhH
Confidence 66666654
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.90 E-value=9.1e-06 Score=76.69 Aligned_cols=81 Identities=26% Similarity=0.380 Sum_probs=74.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCce--------EEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLR--------GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
.+|||-+||..+++.+|.++|.++|.|. .|.|.++++|+..+|-|.|.|.+...|+.|+..+++..|.|.+|
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~i 146 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTI 146 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCc
Confidence 4799999999999999999999999874 36778888999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 009076 437 TVRRANQGA 445 (544)
Q Consensus 437 ~v~~~~~~~ 445 (544)
+|.++....
T Consensus 147 kvs~a~~r~ 155 (351)
T KOG1995|consen 147 KVSLAERRT 155 (351)
T ss_pred hhhhhhhcc
Confidence 999885543
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.81 E-value=0.00018 Score=53.20 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=45.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~ 324 (544)
.|+|.|||...+...|..-+.+.-+= -|+.|+.+ +.+.|+|.|.+.+.|..|+ .|+|..+.|..|.|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdN-------CGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDN-------CGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHT-------TT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhc-------cCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 49999999999877666555433210 02356665 3589999999999999999 899999999999998
Q ss_pred CC
Q 009076 325 RP 326 (544)
Q Consensus 325 ~~ 326 (544)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 75
No 154
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.58 E-value=3.7e-05 Score=69.26 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=55.0
Q ss_pred HHHHHHHH-hcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 379 AQIRELLE-SFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 379 e~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
|+|..+|+ +||.|+.+.|-.+. .-.-.|-+||+|...++|++|+..|||.+|.|++|...++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 67777787 89999999776652 2234789999999999999999999999999999999998433
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.58 E-value=0.00013 Score=67.78 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=62.6
Q ss_pred EEEEcCCCCCCcHHH------HHHHHHhcCCceEEEEccCCCCCCc-ce--EEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 366 RIFVGGLPYYFTEAQ------IRELLESFGPLRGFDLVKDRETGNS-KG--YAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~------l~~~f~~~G~i~~v~i~~~~~~g~~-~g--~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
-+||-+|++.+..|+ -.++|.+||.|..|.|-+......+ .+ -.||.|.+.|+|..||.+.+|..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 588999988876554 2578999999999888654311111 12 24999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 009076 437 TVRRANQGA 445 (544)
Q Consensus 437 ~v~~~~~~~ 445 (544)
+..|...+.
T Consensus 196 katYGTTKY 204 (480)
T COG5175 196 KATYGTTKY 204 (480)
T ss_pred eeecCchHH
Confidence 999975554
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.56 E-value=0.00019 Score=68.00 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=71.3
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCC--CCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTA--GPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~--~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
...-+|||.+||..+++++|.++|.+||.|.--+.. ....+-.+..++..|+-|.|.|.+...|+.|+ -+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 345689999999999999999999999988643322 11223445567888999999999999999999 899999999
Q ss_pred ceeEEcCCCCC
Q 009076 319 APVKVRRPSDY 329 (544)
Q Consensus 319 ~~l~v~~~~~~ 329 (544)
.+|+|..+...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999765443
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.53 E-value=0.00056 Score=53.73 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=51.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEc-cCC------CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCe-EE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV-KDR------ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TL 436 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~-~~~------~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~i 436 (544)
..|.|-+.|+. ....|.++|+.||.|.+..-. ... .......+..|+|.+..+|.+|| ..||..|+|. .|
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEE
Confidence 36889999987 566788999999999877511 110 00112568999999999999999 6699999874 56
Q ss_pred EEEEc
Q 009076 437 TVRRA 441 (544)
Q Consensus 437 ~v~~~ 441 (544)
-|.|+
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 68887
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.51 E-value=0.00018 Score=67.18 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=70.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCC--ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGP--LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.++||+||-|.+|.+||.+.+...|. +.++++..+..+|.++|||+|...+.....+.++.|-...|.|+.-.|.-++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 36999999999999999999998775 7778888888899999999999999999999999999999998887777664
Q ss_pred C
Q 009076 443 Q 443 (544)
Q Consensus 443 ~ 443 (544)
+
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 159
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00029 Score=69.77 Aligned_cols=157 Identities=21% Similarity=0.295 Sum_probs=92.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCC-CC--CCcce---EEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR-ET--GNSKG---YAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~-~~--g~~~g---~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
..+|||++||++++|+.|...|..||.+. |..+... .. --++| |+|+-|+++...+..+.++.- .-.+--+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~yf~ 336 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYYFK 336 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceEEE
Confidence 35799999999999999999999999864 3333111 11 12355 999999999988877666532 11112222
Q ss_pred EEEcCCC--CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHh-hcCCc
Q 009076 438 VRRANQG--ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGG-KFAFC 514 (544)
Q Consensus 438 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~-~fG~V 514 (544)
|.-...+ ..+..+...... ... +.......+.+++.|..+--+ | .. ++|-.+|+ -||.|
T Consensus 337 vss~~~k~k~VQIrPW~laDs----~fv----~d~sq~lDprrTVFVGgvprp--l-~A-------~eLA~imd~lyGgV 398 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADS----DFV----LDHNQPIDPRRTVFVGGLPRP--L-TA-------EELAMIMEDLFGGV 398 (520)
T ss_pred EecCcccccceeEEeeEeccc----hhh----hccCcccCccceEEecCCCCc--c-hH-------HHHHHHHHHhcCce
Confidence 2222111 111111111000 000 012234567788888776222 1 12 36777777 79999
Q ss_pred eee---------ccCceEEEEecCCCCC----CCceEEE
Q 009076 515 SPT---------FCYKESGLIYTDRRLH----NPQFVYF 540 (544)
Q Consensus 515 ~~i---------~~~g~a~V~f~~~~~A----~a~~~~~ 540 (544)
.-+ -.+|-+-|.|.+-.+- .|+|+.+
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEE
Confidence 888 4578889999887654 5555544
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00056 Score=68.22 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=62.1
Q ss_pred CEEEEcCCCCCCc------HHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC-CeEEE
Q 009076 365 DRIFVGGLPYYFT------EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLT 437 (544)
Q Consensus 365 ~~l~v~nl~~~~~------ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~i~ 437 (544)
.+|+|.|+|.--. ...|..+|+++|+|..+.++.+..+| .+|+.|++|.+..+|..|++.|||..|+ +.+..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 3799999985422 35678899999999999999886555 8999999999999999999999999985 45555
Q ss_pred EEE
Q 009076 438 VRR 440 (544)
Q Consensus 438 v~~ 440 (544)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 543
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.43 E-value=6.2e-05 Score=71.74 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=106.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.+++|++++...+.+.++..++..+|.+....+........++|+++|.|...+.+..||.......+.+..+.....+.
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 45799999999999999999999999888877777666788899999999999999999955444567777766655533
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 517 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------ 517 (544)
....+.. .........+..++.+.++ ..+++. ++|+.+|..+|.|..+
T Consensus 168 ~~~~~~n----------------~~~~~~~~~s~~~~~~~~~--~f~~~~--------d~~~~~~~~~~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 168 RGLRPKN----------------KLSRLSSGPSDTIFFVGEL--DFSLTR--------DDLKEHFVSSGEITSVRLPTDE 221 (285)
T ss_pred ccccccc----------------hhcccccCccccceeeccc--ccccch--------HHHhhhccCcCcceeeccCCCC
Confidence 3211110 0111112233333434444 333333 3777899999999999
Q ss_pred ---ccCceEEEEecCCCCCCCceE
Q 009076 518 ---FCYKESGLIYTDRRLHNPQFV 538 (544)
Q Consensus 518 ---~~~g~a~V~f~~~~~A~a~~~ 538 (544)
...|++||+|.....+..++.
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhh
Confidence 678899999999999977776
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.39 E-value=0.00042 Score=47.66 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHH
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 423 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~ 423 (544)
+.|.|.+.+.... +.|...|..||.|..+.+... ..+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4688999997755 456669999999999988733 558999999999999985
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.00041 Score=62.55 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=82.8
Q ss_pred HHHHHH-HcCCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHH
Q 009076 304 EASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIR 382 (544)
Q Consensus 304 ~A~~Al-~l~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~ 382 (544)
-|..|- +|++....|+.|.|.++.. ..|+|.||...+..+.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------a~l~V~nl~~~~sndll~ 49 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------AELYVVNLMQGASNDLLE 49 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------ceEEEEecchhhhhHHHH
Confidence 456666 8899999999999987532 269999999999999999
Q ss_pred HHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC--C--CeeCCeEEEEEEc
Q 009076 383 ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--G--IKMGDKTLTVRRA 441 (544)
Q Consensus 383 ~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g--~~~~g~~i~v~~~ 441 (544)
+.|+.||.|....++.| ..++..+-++|+|...-.|.+|+..++ | ....+.++.|..+
T Consensus 50 ~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 50 QAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred HhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 99999999998777776 468888999999999999999998884 2 2335666666554
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.30 E-value=9.2e-05 Score=67.57 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=49.2
Q ss_pred CCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee----------ccCceEEEEecCCCCCCCceEE
Q 009076 475 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----------FCYKESGLIYTDRRLHNPQFVY 539 (544)
Q Consensus 475 ~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i----------~~~g~a~V~f~~~~~A~a~~~~ 539 (544)
.+++|+.|.|||...+..+ ++.++++++|++||+|..| ...-.+||+|...++|-+|+++
T Consensus 279 ~ptkvlllrnmVg~gevd~-----elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vd 348 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDE-----ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVD 348 (378)
T ss_pred cchHHHHhhhhcCcccccH-----HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHh
Confidence 4689999999999887654 3566899999999999988 2345689999999999777653
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.19 E-value=0.0003 Score=67.89 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccC---CCCC--C--------cceEEEEEEcChHHHHHHHHHhCCC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD---RETG--N--------SKGYAFCVYQDLSVTDIACAALNGI 429 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~---~~~g--~--------~~g~afV~f~~~e~A~~A~~~l~g~ 429 (544)
+..+|.+.|||.+-.-|.|.++|+.+|.|+.|+|... +.++ . .+-+|||+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4468999999999999999999999999999999877 3322 1 2457999999999999999888644
Q ss_pred e
Q 009076 430 K 430 (544)
Q Consensus 430 ~ 430 (544)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.14 E-value=0.0011 Score=45.61 Aligned_cols=52 Identities=21% Similarity=0.551 Sum_probs=42.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM 309 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al 309 (544)
+.|-|.|.++...+.-| .+|..||+ |.+........+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGe------------I~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGE------------IVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCC------------EEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 45889999988875554 48888996 566677777889999999999999986
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.14 E-value=0.00034 Score=62.95 Aligned_cols=70 Identities=19% Similarity=0.417 Sum_probs=60.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC--------CCcce----EEEEEEcChHHHHHHHHHhCCCeeCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET--------GNSKG----YAFCVYQDLSVTDIACAALNGIKMGD 433 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~--------g~~~g----~afV~f~~~e~A~~A~~~l~g~~~~g 433 (544)
+||+++||+.+...-|+++|+.||.|-.|.+.....+ |.+.+ -|+|+|.+.-.|......|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 7999999999999999999999999999999776433 22222 37899999999999999999999998
Q ss_pred eE
Q 009076 434 KT 435 (544)
Q Consensus 434 ~~ 435 (544)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 75
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.05 E-value=0.0008 Score=67.62 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=63.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHh-cCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee---CCeEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLES-FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM---GDKTL 436 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~~i 436 (544)
....++|+|.||---.|.-+|++++.. .|.|+...|-+- +..|||.|.++++|...+.+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345578999999888999999999995 555666633222 66899999999999999999999987 78999
Q ss_pred EEEEcCC
Q 009076 437 TVRRANQ 443 (544)
Q Consensus 437 ~v~~~~~ 443 (544)
.|.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999843
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.93 E-value=0.00033 Score=67.56 Aligned_cols=72 Identities=24% Similarity=0.247 Sum_probs=60.9
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCC-------CcEEEEEecCHHHHHHHH-HcCC
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE-------KKFAFVEMRSVEEASNAM-ALDG 313 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~A~~Al-~l~~ 313 (544)
-++++|.+.|||.+-..+.|.++|..||.|+.|.++.++.+-.++.-... +-+|||+|...+.|.+|. .|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36889999999999999999999999999999999999865555544443 568999999999999999 4443
No 170
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.89 E-value=0.002 Score=51.60 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=41.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC-----CceeCC
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD-----GIIFEG 318 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~-----~~~l~g 318 (544)
+-|+|.|++..++-++|+++|+.||. |..+.+......|||.|.+.+.|+.|+ ++. +..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~------------V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~ 69 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGE------------VAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKG 69 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--------------EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCC------------cceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcC
Confidence 45889999999999999999999985 555666666778999999999999999 432 345566
Q ss_pred ceeEEc
Q 009076 319 APVKVR 324 (544)
Q Consensus 319 ~~l~v~ 324 (544)
..+.+.
T Consensus 70 ~~~~~~ 75 (105)
T PF08777_consen 70 KEVTLE 75 (105)
T ss_dssp SSEEEE
T ss_pred ceEEEE
Confidence 555553
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.68 E-value=0.0058 Score=48.07 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=49.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCC-CCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT-AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~-~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..-|.|-|.|+.. ...|.+.|++||.|+.... ......+.............|.|.++.+|.+||..||..|.|.-|-
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 4568899999984 5677889999997533110 0000000000234456789999999999999999999999886544
Q ss_pred -EcC
Q 009076 323 -VRR 325 (544)
Q Consensus 323 -v~~ 325 (544)
|.+
T Consensus 85 GV~~ 88 (100)
T PF05172_consen 85 GVKP 88 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 443
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.54 E-value=0.0029 Score=59.18 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=56.3
Q ss_pred eEEEcCCCCCCcHHH----H--HHHHHHHHHhhcCCCCCCCCceEEEeec---CCCcE--EEEEecCHHHHHHHH-HcCC
Q 009076 246 RVYVGGLPPTANEQS----V--ATFFSQVMAAIGGNTAGPGDAVVNVYIN---HEKKF--AFVEMRSVEEASNAM-ALDG 313 (544)
Q Consensus 246 ~l~V~nLp~~~te~~----L--~~~f~~~G~i~~~~~~~~~~~v~~~~~~---~~kg~--afV~f~~~~~A~~Al-~l~~ 313 (544)
-+||-+||+.+..++ | .++|.+||.|+.+ +++..+. ...+. .||.|.+.++|..|+ +.+|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KI--------vvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg 187 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKI--------VVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG 187 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEE--------EecccccccccccccceEEEEecchHHHHHHHHHhcc
Confidence 389999999886555 2 4799999988664 4444331 11232 399999999999999 9999
Q ss_pred ceeCCceeEEcCCC
Q 009076 314 IIFEGAPVKVRRPS 327 (544)
Q Consensus 314 ~~l~g~~l~v~~~~ 327 (544)
..++|+.|+..+..
T Consensus 188 s~~DGr~lkatYGT 201 (480)
T COG5175 188 SLLDGRVLKATYGT 201 (480)
T ss_pred ccccCceEeeecCc
Confidence 99999999997643
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.41 E-value=0.015 Score=48.62 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 379 AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 379 e~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
.+|.+.|..||.+.=|++.-+ .-+|.|.+-+.|.+|+ .|+|..++|+.|.|..-.+...
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 478888999999887777654 5799999999999999 8899999999999998765544
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.05 E-value=0.028 Score=41.82 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 427 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 427 (544)
+.+|. +|..+-..||.++|++||.|. |..+.+ ..|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 56665 999999999999999999885 555554 379999999999999998875
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.97 E-value=0.0039 Score=56.35 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=54.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEE--eecCCC--c--EEEEEecCHHHHHHHH-HcCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV--YINHEK--K--FAFVEMRSVEEASNAM-ALDGII 315 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~--~~~~~k--g--~afV~f~~~~~A~~Al-~l~~~~ 315 (544)
..-.||+++||+.+....|+++|+.||.|-.+.+.......... .-+.+. . -|+|+|.+...|..+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34569999999999999999999999987443211110000000 001111 1 3789999999999988 999999
Q ss_pred eCCce
Q 009076 316 FEGAP 320 (544)
Q Consensus 316 l~g~~ 320 (544)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 176
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.90 E-value=0.013 Score=55.23 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=57.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHh--hcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAA--IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i--~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
.-.+||+||-|.+|++||.+.+...|-. ..++ -..+...|.+||||+|...+.....+.| -|-...|.|+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK------FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMK------FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhh------hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 3469999999999999999988876632 1111 2334445789999999999999999999 67778898887
Q ss_pred eEEc
Q 009076 321 VKVR 324 (544)
Q Consensus 321 l~v~ 324 (544)
-.|.
T Consensus 154 P~V~ 157 (498)
T KOG4849|consen 154 PTVL 157 (498)
T ss_pred Ceee
Confidence 6663
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.86 E-value=0.011 Score=57.28 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=58.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC-eeCCeEEEEEEcCCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI-KMGDKTLTVRRANQG 444 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~-~~~g~~i~v~~~~~~ 444 (544)
.|+++||.+.++..+|..+|...-.-..-.++. ..||+||.+.+...|.+|++.++|. .+.|+.+.|.+.-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 689999999999999999998642111111111 2689999999999999999999987 478999999988444
Q ss_pred C
Q 009076 445 A 445 (544)
Q Consensus 445 ~ 445 (544)
.
T Consensus 77 k 77 (584)
T KOG2193|consen 77 K 77 (584)
T ss_pred H
Confidence 3
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.83 E-value=0.056 Score=38.14 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=43.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhc---CCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHh
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESF---GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l 426 (544)
..|+|.|++. ++-++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4799999974 7788999999998 125567777763 5789999999999999765
No 179
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.83 E-value=0.098 Score=52.76 Aligned_cols=69 Identities=9% Similarity=0.125 Sum_probs=55.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHh--cCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCC--CeeCCeEEEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG--IKMGDKTLTVRR 440 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~~~g~~i~v~~ 440 (544)
|.|+|+-||..+-+|+|+.+|.. +-.+.+|.+.-+ . -=||.|++..||++|.+.|.. ..|.|++|....
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~-nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------D-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------C-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 57899999999999999999986 667888877654 1 249999999999999988853 457787776654
No 180
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=95.72 E-value=0.027 Score=56.74 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=13.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEE
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i 396 (544)
+|.+.+|..+ |++++.+||.-+.+.|
T Consensus 510 ClVFE~LslN-----LRevLKKyG~nvGL~i 535 (752)
T KOG0670|consen 510 CLVFEPLSLN-----LREVLKKYGRNVGLHI 535 (752)
T ss_pred EEEehhhhch-----HHHHHHHhCcccceee
Confidence 4444555433 5566666666444443
No 181
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.71 E-value=0.0089 Score=61.41 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=56.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.-++||+|+...+..+-+..++..||-|.++. .+. |||+.|..+..+..|+ .++...+.|+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k-------r~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWK-------RDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhh-------hhh--------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 45799999999999999999999999876553 111 9999999999999999 8888889888887
Q ss_pred EcC
Q 009076 323 VRR 325 (544)
Q Consensus 323 v~~ 325 (544)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 754
No 182
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=95.62 E-value=0.041 Score=54.90 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=10.4
Q ss_pred cCCCCCCcHHHHHHHHHHH
Q 009076 250 GGLPPTANEQSVATFFSQV 268 (544)
Q Consensus 250 ~nLp~~~te~~L~~~f~~~ 268 (544)
||--+.+|..++...|-+|
T Consensus 555 G~~r~klt~~~~lk~rmq~ 573 (653)
T KOG2548|consen 555 GNSRPKLTFFECLKSRMQF 573 (653)
T ss_pred CCCCCcccHHHHHHHHHHH
Confidence 5555666755555444444
No 183
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.39 E-value=0.013 Score=55.55 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=62.5
Q ss_pred EEEEcCCCCCCcHHHHH---HHHHhcCCceEEEEccCCC--CCCc-ceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 366 RIFVGGLPYYFTEAQIR---ELLESFGPLRGFDLVKDRE--TGNS-KGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~---~~f~~~G~i~~v~i~~~~~--~g~~-~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
-++|-+|+..+..+.+. +.|.+||.|..|.+..+.. .+.. ..-+||.|...++|..||...+|+.++|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 46788888776655554 4688899999998888651 1211 2238999999999999999999999999999999
Q ss_pred EcCCCCC
Q 009076 440 RANQGAN 446 (544)
Q Consensus 440 ~~~~~~~ 446 (544)
+...+..
T Consensus 159 ~gttkyc 165 (327)
T KOG2068|consen 159 LGTTKYC 165 (327)
T ss_pred hCCCcch
Confidence 8865543
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.31 E-value=0.012 Score=59.39 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=61.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee---C
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF---E 317 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l---~ 317 (544)
..+..|+|.||-.-+|.-+|++++..-|. .|...++.+-+..|||.|.+.++|.+.. +|+|..| +
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg-----------~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGG-----------NVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccC-----------chHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 35678999999999999999999996543 2445577777889999999999999999 9999887 4
Q ss_pred CceeEEcCCC
Q 009076 318 GAPVKVRRPS 327 (544)
Q Consensus 318 g~~l~v~~~~ 327 (544)
++.|.+.|..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 5677776543
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.98 E-value=0.02 Score=52.14 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=48.3
Q ss_pred HHHHHHHH-HHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEcCCC
Q 009076 259 QSVATFFS-QVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPS 327 (544)
Q Consensus 259 ~~L~~~f~-~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~~~~ 327 (544)
++|...|+ +||+|..++ |.+-.-..-.|-+||.|...++|++|+ .||+.-|.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~-------Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN-------VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhh-------hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55555555 899987764 333333345788999999999999999 999999999999987643
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.92 E-value=0.23 Score=46.37 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=55.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeE-EEEEEcCCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT-LTVRRANQG 444 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~-i~v~~~~~~ 444 (544)
-|.|-++|+. .-..|..+|++||.|++...... -.+-+|.|.+.-+|++||. .||..|+|-. |-|..|..+
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 5778888876 44578899999999988766532 4589999999999999994 4999997755 457777544
No 187
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.63 E-value=0.032 Score=58.89 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee--CCeEEEEEEcCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM--GDKTLTVRRANQ 443 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--~g~~i~v~~~~~ 443 (544)
+..+.|.+-..+-.-|..+|++||.|.++..+++ -..|.|+|.+++.|..|+.+|+|..+ -|-+.+|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4556666777788899999999999999999887 45899999999999999999999976 688899999866
Q ss_pred CCC
Q 009076 444 GAN 446 (544)
Q Consensus 444 ~~~ 446 (544)
...
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 554
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.62 E-value=0.11 Score=46.15 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC--CCeeCCeEEEEEEcCCC
Q 009076 377 TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVRRANQG 444 (544)
Q Consensus 377 ~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~i~v~~~~~~ 444 (544)
..+.|.++|..|+.+..+.+++. -+-+.|.|.+.++|..|...|+ +..+.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45889999999999888877765 3468999999999999999999 99999999999999433
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.34 E-value=0.045 Score=48.40 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=51.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHh-cCCc---eEEEEccCC-CCCC-cceEEEEEEcChHHHHHHHHHhCCCee---CC--
Q 009076 365 DRIFVGGLPYYFTEAQIRELLES-FGPL---RGFDLVKDR-ETGN-SKGYAFCVYQDLSVTDIACAALNGIKM---GD-- 433 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~-~G~i---~~v~i~~~~-~~g~-~~g~afV~f~~~e~A~~A~~~l~g~~~---~g-- 433 (544)
..|.|++||+.+||+++.+.+++ ++.. ..+.-.... .... .-.-|||.|.+.+++..-+..++|+.| .|
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 48999999999999999997776 5554 233211111 1111 235699999999999999999999887 22
Q ss_pred eEEEEEEcCC
Q 009076 434 KTLTVRRANQ 443 (544)
Q Consensus 434 ~~i~v~~~~~ 443 (544)
-...|.||--
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 4556777733
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.10 E-value=0.53 Score=37.88 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=48.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 432 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 432 (544)
.+.+...|..++-++|..+.+.+-. |..++|+++. ..++-.++++|.+.++|..-...+||..|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4455555555666777666666544 7788998872 335678999999999999999999999884
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.04 E-value=0.21 Score=41.30 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=52.8
Q ss_pred CEEEEcCCCC----CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 365 DRIFVGGLPY----YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 365 ~~l~v~nl~~----~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
.+|.|.=|.. ..+...|...++.||+|.+|.+.- +..|.|.|.+..+|-+|+.+++. ...|..+.+.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 4677765544 444456677778899999997743 34799999999999999999876 56678888887
Q ss_pred c
Q 009076 441 A 441 (544)
Q Consensus 441 ~ 441 (544)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 5
No 192
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.54 E-value=0.13 Score=43.11 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.6
Q ss_pred cEEEEEecCHHHHHHHHHcCCceeCCceeEEcC
Q 009076 293 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 325 (544)
Q Consensus 293 g~afV~f~~~~~A~~Al~l~~~~l~g~~l~v~~ 325 (544)
+.-+|.|.+.+.|-+|+.++|..+.|+.|+|..
T Consensus 71 ~~mwVTF~dg~sALaals~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRL 103 (146)
T ss_dssp TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE
T ss_pred CeEEEEECccHHHHHHHccCCcEECCEEEEEEe
Confidence 468999999999999999999999999999964
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.52 E-value=0.24 Score=46.15 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=55.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCce-eEEc
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP-VKVR 324 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~-l~v~ 324 (544)
=|-|-|+|+..+ .-|..+|..||. |++..+.....+-+|.|.+.-+|.+||..||+.|+|.. |-|.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~------------Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGE------------VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVK 265 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCe------------eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeee
Confidence 356668887665 456778999996 66777777778999999999999999999999998865 4455
Q ss_pred CCCCC
Q 009076 325 RPSDY 329 (544)
Q Consensus 325 ~~~~~ 329 (544)
.+.+.
T Consensus 266 pCtDk 270 (350)
T KOG4285|consen 266 PCTDK 270 (350)
T ss_pred ecCCH
Confidence 44443
No 194
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.95 E-value=0.1 Score=52.73 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=51.4
Q ss_pred cceEEEcCCCCCC--c----HHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009076 244 ARRVYVGGLPPTA--N----EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 316 (544)
Q Consensus 244 ~~~l~V~nLp~~~--t----e~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l 316 (544)
...|+|.|+|--- . ..-|..+|+.+|++..+..+ . -.-|..+||.|++|.++.+|..|+ .|||..|
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P------~-~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYP------I-DEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeec------c-CccCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 4568888887522 2 23456789999987554311 1 123458999999999999999999 9999887
Q ss_pred CC-ceeEEc
Q 009076 317 EG-APVKVR 324 (544)
Q Consensus 317 ~g-~~l~v~ 324 (544)
.- .+..|.
T Consensus 131 dknHtf~v~ 139 (698)
T KOG2314|consen 131 DKNHTFFVR 139 (698)
T ss_pred cccceEEee
Confidence 54 455553
No 195
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=92.46 E-value=0.2 Score=50.75 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=2.3
Q ss_pred cEEEEE
Q 009076 293 KFAFVE 298 (544)
Q Consensus 293 g~afV~ 298 (544)
||--|.
T Consensus 420 GYYrv~ 425 (752)
T KOG0670|consen 420 GYYRVR 425 (752)
T ss_pred ceEEEe
Confidence 333333
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.27 E-value=0.5 Score=43.22 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=49.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM 309 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al 309 (544)
..|+|.||...+..+.|..-|..||+|... +++...-+...+-++|+|...-.|.+|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~a-------v~~vD~r~k~t~eg~v~~~~k~~a~~a~ 89 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERA-------VAKVDDRGKPTREGIVEFAKKPNARKAA 89 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchh-------eeeecccccccccchhhhhcchhHHHHH
Confidence 469999999999999999999999998654 2444455677788999999999999998
No 197
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=91.74 E-value=0.2 Score=52.90 Aligned_cols=8 Identities=0% Similarity=0.368 Sum_probs=3.9
Q ss_pred eEEEEecC
Q 009076 522 ESGLIYTD 529 (544)
Q Consensus 522 ~a~V~f~~ 529 (544)
.+||.|..
T Consensus 971 ~~~v~~d~ 978 (1194)
T KOG4246|consen 971 KEAVVIDE 978 (1194)
T ss_pred cceeeecc
Confidence 44555543
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.47 E-value=0.085 Score=52.18 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=62.0
Q ss_pred hccceEEEcCCCCCC-cHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTA-NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~-te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~ 320 (544)
.+.+.|-+.-.|+.+ |-.+|...|.+||.| .+++++.+.-.|.|.|.+..+|-.|....+..|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i------------~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~ 437 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEI------------ENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRF 437 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCcc------------ccccccCchhhheeeeeccccccchhccccceecCce
Confidence 456677777788877 788999999999974 4555666666899999999999888889999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|+|.|.+.
T Consensus 438 iKl~whnp 445 (526)
T KOG2135|consen 438 IKLFWHNP 445 (526)
T ss_pred eEEEEecC
Confidence 99998553
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.43 E-value=0.28 Score=50.87 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
.+..++||+|+-..+..+-++.+...+|.|..+..+. |+|+.|..+..+..|+..|+-..++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3446899999999999999999999999998776643 899999999999999999999999888887755
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.38 E-value=0.16 Score=50.26 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=58.1
Q ss_pred EEEEcCCCCCC-cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 366 RIFVGGLPYYF-TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 366 ~l~v~nl~~~~-~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
.|-+.-.+... +-++|...|.+||.|..|.+-.. .--|.|.|.+..+|-.|. +.++..|+++.|+|.|.++.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 34444455443 56899999999999999987544 346899999999997776 67999999999999999774
Q ss_pred C
Q 009076 445 A 445 (544)
Q Consensus 445 ~ 445 (544)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.01 E-value=1.2 Score=31.98 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 375 YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 375 ~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
.++-++|+..+..|+-. .|..++ .|| ||.|.+..+|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 36788999999999743 334442 454 89999999999999999999998877654
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.68 E-value=0.98 Score=44.77 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=57.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 433 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g 433 (544)
...|+|-.+|..++-.||..++..+-. |.+|+|+++. -..+-.++|.|.+.++|..-...+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 458999999999999999999988654 8999999963 2235569999999999999999999998843
No 203
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=90.45 E-value=0.15 Score=51.11 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=7.1
Q ss_pred CCCcccCCc
Q 009076 1 MADYEVNGE 9 (544)
Q Consensus 1 ~~~~~~~~~ 9 (544)
||+|+|.+.
T Consensus 325 ITsFGGgde 333 (653)
T KOG2548|consen 325 ITSFGGGDE 333 (653)
T ss_pred EeecCCCcc
Confidence 688888765
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.24 E-value=0.85 Score=37.80 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=49.5
Q ss_pred ccceEEEcCCCCCC-cHHH---HHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 243 HARRVYVGGLPPTA-NEQS---VATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 243 ~~~~l~V~nLp~~~-te~~---L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
+..+|.|.-|..++ ..+| |...++.||+|.++ +.-.+..|.|.|.+...|-.|+ ++.. ...
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SV-------------T~cGrqsavVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSV-------------TLCGRQSAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCccee-------------eecCCceEEEEehhhHHHHHHHHhhcC-CCC
Confidence 34579998887776 3334 45567778876543 3345678999999999999999 6655 566
Q ss_pred CceeEEcCC
Q 009076 318 GAPVKVRRP 326 (544)
Q Consensus 318 g~~l~v~~~ 326 (544)
|..+...|-
T Consensus 151 gtm~qCsWq 159 (166)
T PF15023_consen 151 GTMFQCSWQ 159 (166)
T ss_pred CceEEeecc
Confidence 777777663
No 205
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.19 E-value=1.4 Score=31.20 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=38.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-Hc
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL 311 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l 311 (544)
.+|+|.|+. .++.++|+.+|..|..... ...|. .+.- ..|-|.|.+.+.|..|| +|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~------~~~IE--WIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG------PFRIE--WIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC------CceEE--EecC--CcEEEEECCHHHHHHHHHcC
Confidence 369999985 4778899999999921100 00122 2222 25789999999999999 43
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.47 E-value=0.22 Score=38.07 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=43.9
Q ss_pred EEEEecCHHHHHHHHHcCC--ceeCCceeEEcCC--CCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEc
Q 009076 295 AFVEMRSVEEASNAMALDG--IIFEGAPVKVRRP--SDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVG 370 (544)
Q Consensus 295 afV~f~~~~~A~~Al~l~~--~~l~g~~l~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 370 (544)
|+|.|.+..-|+..+.+.. ..+.+..+.|... ......... ........+|.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q----------------------v~~~vs~rtVlvs 58 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ----------------------VFSGVSKRTVLVS 58 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE----------------------EEEcccCCEEEEe
Confidence 6899999999999995444 4466666666421 110000000 0011233589999
Q ss_pred CCCCCCcHHHHHHHHH
Q 009076 371 GLPYYFTEAQIRELLE 386 (544)
Q Consensus 371 nl~~~~~ee~l~~~f~ 386 (544)
|||..+.+++|++.++
T Consensus 59 gip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 59 GIPDVLDEEELRDKLE 74 (88)
T ss_pred CCCCCCChhhheeeEE
Confidence 9999999999987643
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.44 E-value=0.23 Score=43.94 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=42.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHH-HHHhhcCCCCCCCCceEEEeec-----C-CCcEEEEEecCHHHHHHHH-HcCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQ-VMAAIGGNTAGPGDAVVNVYIN-----H-EKKFAFVEMRSVEEASNAM-ALDGI 314 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~-~G~i~~~~~~~~~~~v~~~~~~-----~-~kg~afV~f~~~~~A~~Al-~l~~~ 314 (544)
...+|.|.+||+.+|++++.+.+.. ++..... .......+ . .-..|||.|.+.+++...+ .++|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w-------~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDW-------YYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE----------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccce-------EEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 3558999999999999999987665 3321100 01110111 1 1246999999999999999 89998
Q ss_pred eeCC
Q 009076 315 IFEG 318 (544)
Q Consensus 315 ~l~g 318 (544)
.|.+
T Consensus 79 ~F~D 82 (176)
T PF03467_consen 79 VFVD 82 (176)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 7744
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.20 E-value=2.7 Score=39.51 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=60.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCC-------CCCCcceEEEEEEcChHHHH----HHHHHhC--CCee
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR-------ETGNSKGYAFCVYQDLSVTD----IACAALN--GIKM 431 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~-------~~g~~~g~afV~f~~~e~A~----~A~~~l~--g~~~ 431 (544)
+.|.+.|+...++-..+...|-+||+|++|.++.+. ........+.+-|-+.+.|. ..++.|+ ...+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999999998874 11233467899999988876 3344444 3456
Q ss_pred CCeEEEEEEcCC
Q 009076 432 GDKTLTVRRANQ 443 (544)
Q Consensus 432 ~g~~i~v~~~~~ 443 (544)
....|.|.|..-
T Consensus 96 ~S~~L~lsFV~l 107 (309)
T PF10567_consen 96 KSESLTLSFVSL 107 (309)
T ss_pred CCcceeEEEEEE
Confidence 778888888743
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.88 E-value=3.5 Score=30.51 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHhcCCc-----eEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 374 YYFTEAQIRELLESFGPL-----RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 374 ~~~~ee~l~~~f~~~G~i-----~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..++..+|..++...+.| -.|.|... |+||+-... .|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 346778888888876554 45666554 899988765 677889999999999999999764
No 210
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.57 E-value=1 Score=41.49 Aligned_cols=81 Identities=28% Similarity=0.509 Sum_probs=51.7
Q ss_pred CCCCEEEEcCCCCC------------CcHHHHHHHHHhcCCceEEEEccC-C----CCCCcc-----eE---------EE
Q 009076 362 EGPDRIFVGGLPYY------------FTEAQIRELLESFGPLRGFDLVKD-R----ETGNSK-----GY---------AF 410 (544)
Q Consensus 362 ~~~~~l~v~nl~~~------------~~ee~l~~~f~~~G~i~~v~i~~~-~----~~g~~~-----g~---------af 410 (544)
+.+.+|++.+||-. .+++-|...|+.||.|..|.|+.- + .+|... || ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34457777777643 367899999999999998888642 1 234332 22 35
Q ss_pred EEEcChHHHHHHHHHhCCCee----CC----eEEEEEEcC
Q 009076 411 CVYQDLSVTDIACAALNGIKM----GD----KTLTVRRAN 442 (544)
Q Consensus 411 V~f~~~e~A~~A~~~l~g~~~----~g----~~i~v~~~~ 442 (544)
|+|...-.-..|+.+|.|..+ .| -.|+|.|..
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdr 266 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDR 266 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccch
Confidence 566555556677777777654 22 356666653
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.19 E-value=4.7 Score=41.50 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHHHhc----CCceEEEEccCC----------CCCC---------------------
Q 009076 361 LEGPDRIFVGGLPYY-FTEAQIRELLESF----GPLRGFDLVKDR----------ETGN--------------------- 404 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~-~~ee~l~~~f~~~----G~i~~v~i~~~~----------~~g~--------------------- 404 (544)
...+++|-|-||.|+ +.-++|.-+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345568999999998 7789999999864 478899886531 1111
Q ss_pred ----------------cceEEEEEEcChHHHHHHHHHhCCCeeC--CeEEEEEEc
Q 009076 405 ----------------SKGYAFCVYQDLSVTDIACAALNGIKMG--DKTLTVRRA 441 (544)
Q Consensus 405 ----------------~~g~afV~f~~~e~A~~A~~~l~g~~~~--g~~i~v~~~ 441 (544)
.--||.|+|.+++.|.+....+.|..|. +..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1247999999999999999999999994 677777776
No 212
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.62 E-value=1.3 Score=33.20 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=37.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 312 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~ 312 (544)
....+|+ +|......||.++|++||.| .-..++ -..|||.....+.|..|+ .+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I------------~VsWi~--dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI------------YVSWIN--DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE------------EEEEEC--TTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE------------EEEEEc--CCcEEEEeecHHHHHHHHHHhc
Confidence 3445665 99999999999999999864 222232 347999999999999999 554
No 213
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=84.61 E-value=4.2 Score=34.90 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=9.0
Q ss_pred CCCCCCCCchhhhcc
Q 009076 179 SGFDMAPPASAMLAA 193 (544)
Q Consensus 179 ~~~~~~~~~~~~~~~ 193 (544)
..|+.++.+.....+
T Consensus 117 ~yv~VPp~gf~~~y~ 131 (182)
T PF06495_consen 117 KYVDVPPPGFEYAYG 131 (182)
T ss_pred eeccCCCcccccccC
Confidence 457777766655444
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.73 E-value=1.6 Score=46.89 Aligned_cols=70 Identities=26% Similarity=0.287 Sum_probs=57.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee--CCceeE
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF--EGAPVK 322 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l--~g~~l~ 322 (544)
+.++.|.+-..+-.-|..+|.+||.|+ ..++.+.-..|.|+|.+.+.|..|+ +++|..+ -|-+.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~------------s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~ 367 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVA------------SAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSR 367 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchh------------hheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCcee
Confidence 467778888999999999999999754 4556667788999999999999999 9999764 577777
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|.+++
T Consensus 368 V~~ak 372 (1007)
T KOG4574|consen 368 VSFAK 372 (1007)
T ss_pred EEecc
Confidence 76543
No 215
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.08 E-value=4.7 Score=32.47 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=40.5
Q ss_pred eEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 246 RVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 246 ~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
.|.|-..|+ .++.++|..+.+.+-..+. .+.-+..+. ++-.+++.|.+.+.|..+. .+||..|.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~--------~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIE--------HIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEE--------EEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344445555 4455666666655543221 222233333 4556899999999999999 99998874
No 216
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.96 E-value=2.6 Score=37.50 Aligned_cols=57 Identities=23% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC--CceeCCceeEEcCC
Q 009076 258 EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFEGAPVKVRRP 326 (544)
Q Consensus 258 e~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~--~~~l~g~~l~v~~~ 326 (544)
.+.|.++|..++. ++....-++-+-..|.|.+.+.|..|. .|+ +..+.|..|+|-++
T Consensus 9 ~~~l~~l~~~~~~------------~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 9 LAELEELFSTYDP------------PVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp HHHHHHHHHTT-S------------S-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred HHHHHHHHHhcCC------------ceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 4678888888874 455566778888999999999999999 888 89999999999776
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.36 E-value=5.4 Score=28.72 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 255 TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 255 ~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
.++-++|+..|..|+-. .|+.. ..|| ||.|.+..+|+++. ..++..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~----------~I~~d----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD----------RIRDD----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc----------eEEec----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56788999999988521 23222 2333 89999999999999 88888887776654
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.64 E-value=8.3 Score=38.56 Aligned_cols=67 Identities=12% Similarity=0.260 Sum_probs=51.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
...|+|-.+|..+|.-||..|...|-..+. .|.-+..+. ++-.++|.|.+.++|..+. .+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~--------~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQIS--------DIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhh--------eeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 667999999999999999999998754322 122222333 3446899999999999999 999988864
No 219
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.80 E-value=3.6 Score=43.88 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=2.8
Q ss_pred CCCCCCc
Q 009076 251 GLPPTAN 257 (544)
Q Consensus 251 nLp~~~t 257 (544)
.||..++
T Consensus 609 vlP~gLk 615 (1102)
T KOG1924|consen 609 VLPFGLK 615 (1102)
T ss_pred cCCCCCC
Confidence 3444433
No 220
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=76.59 E-value=2.7 Score=42.94 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=52.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCC--ceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG--IIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~--~~l~g~ 319 (544)
.-|-|++.-||..+-.++|+.||..-- .-.++++.+..+.+ -||.|.+..+|+.|. .|.. ..|.|+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~en----------cPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGEN----------CPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCC----------CCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 456788999999999999999998521 12577888877765 599999999999998 4432 346666
Q ss_pred eeEE
Q 009076 320 PVKV 323 (544)
Q Consensus 320 ~l~v 323 (544)
+|..
T Consensus 243 pImA 246 (684)
T KOG2591|consen 243 PIMA 246 (684)
T ss_pred chhh
Confidence 5543
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.08 E-value=4 Score=35.48 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred CEEEEcCCCCCCc-----HHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCe-EEEE
Q 009076 365 DRIFVGGLPYYFT-----EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TLTV 438 (544)
Q Consensus 365 ~~l~v~nl~~~~~-----ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~i~v 438 (544)
..+++.+++..+- ......+|-.|.......+++. .+..-|-|.+.+.|..|...+++..|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3566667765532 3455667777777666666665 56788999999999999999999999888 7888
Q ss_pred EEcCCCC
Q 009076 439 RRANQGA 445 (544)
Q Consensus 439 ~~~~~~~ 445 (544)
-|++...
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7875554
No 222
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=75.27 E-value=0.65 Score=44.40 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=51.8
Q ss_pred eEEEcCCCCCCcHHHHH---HHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 246 RVYVGGLPPTANEQSVA---TFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~---~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
-+||-+|+..+..+.+. ++|.+||.|..+......- ..... ...-+||.|...++|..|| ..+|+.+.|+.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S----~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS----SSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcc----cccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 48888999877544443 4788888765432110000 00011 1123899999999999999 99999999999
Q ss_pred eEEcCCC
Q 009076 321 VKVRRPS 327 (544)
Q Consensus 321 l~v~~~~ 327 (544)
|+..+..
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 8776543
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.55 E-value=17 Score=35.79 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=45.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHH
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 425 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~ 425 (544)
+-+.+|-|.++|...-.+||..+|+.|+. --.|+++-+ ..||..|.+...|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 44568999999999999999999999976 334555544 3799999999999999843
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.41 E-value=3.9 Score=35.13 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=61.1
Q ss_pred CCcEEEEEecCHHHHHHHHHcCCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEc
Q 009076 291 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVG 370 (544)
Q Consensus 291 ~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 370 (544)
..++..++|.+.+++..++......+.+..+.+............ .....+--|.|.
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~-----------------------~~~~~~vWVri~ 110 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEV-----------------------KFEHIPVWVRIY 110 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhccccccccc-----------------------ceeccchhhhhc
Confidence 468999999999999999977777888888888654321110000 000011248889
Q ss_pred CCCCC-CcHHHHHHHHHhcCCceEEEEccC
Q 009076 371 GLPYY-FTEAQIRELLESFGPLRGFDLVKD 399 (544)
Q Consensus 371 nl~~~-~~ee~l~~~f~~~G~i~~v~i~~~ 399 (544)
|||.. .+++-|..+.+.+|.+..+.....
T Consensus 111 glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 111 GLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 99988 788999999999999988876543
No 225
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=68.05 E-value=8.9 Score=28.33 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEcC
Q 009076 254 PTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRR 325 (544)
Q Consensus 254 ~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~~ 325 (544)
..++..+|..+|...+.|..- .|-++.+. ..|+||+-... .|..++ .|++..+.|++|.|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~-------~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGR-------DIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GG-------GEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHH-------hEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 367888899888877544332 35455444 45888887665 667777 8999999999999864
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.61 E-value=22 Score=33.31 Aligned_cols=47 Identities=4% Similarity=0.051 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHH
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVE 303 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~ 303 (544)
-|+|+||+.++--.||+.-+...|. .-+.+......|-||+.|.+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~-----------~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKREC-----------TPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCC-----------CceeEeeecCCcceeEecCCcc
Confidence 4999999999999999998888754 3556667777889999998753
No 227
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=66.88 E-value=11 Score=34.43 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred cCCCCCCCCceEEEeecC---CCcEEEEEecCHH
Q 009076 273 GGNTAGPGDAVVNVYINH---EKKFAFVEMRSVE 303 (544)
Q Consensus 273 ~~~~~~~~~~v~~~~~~~---~kg~afV~f~~~~ 303 (544)
+|.+.+-...|.++.+.. ++..|.|+|..++
T Consensus 194 s~yL~gRerkIaDi~idhpScSKQHaviQyR~v~ 227 (293)
T KOG1882|consen 194 SCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVE 227 (293)
T ss_pred eeeecCceeeeeccCCCCccccccceeeeeeecc
Confidence 445555545566666543 6788999998775
No 228
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=64.99 E-value=3.7 Score=30.27 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCCcceeEecCCCCcccCCChH
Q 009076 474 SVPSKVVCLTQVVSADELKDDE 495 (544)
Q Consensus 474 ~~~~~~~~l~n~~~~~~l~~~~ 495 (544)
.+++.|+.|.|||++.+.++..
T Consensus 51 ~~aS~C~lLkNMFDP~~Ete~~ 72 (73)
T PF15519_consen 51 PIASRCFLLKNMFDPAEETEPD 72 (73)
T ss_dssp S---SEEEEESSS-TTCGGSTT
T ss_pred CCCCceeeeecCCCcccccCCC
Confidence 3789999999999998766653
No 229
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.53 E-value=73 Score=30.32 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=95.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEe-ecCCCcEEEEEecCHHHHHHHH-H-cCC-----c
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY-INHEKKFAFVEMRSVEEASNAM-A-LDG-----I 314 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~-~~~~kg~afV~f~~~~~A~~Al-~-l~~-----~ 314 (544)
..|.|...|+...++--.+...|-.||+|.+++++...+.-.+.. .........+-|-+.+.|-... . |+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999888888999999988876433332111111 1223467899999998886665 2 221 2
Q ss_pred eeCCceeEEcCCCC-CCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHH-HHHH---HhcC
Q 009076 315 IFEGAPVKVRRPSD-YNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQI-RELL---ESFG 389 (544)
Q Consensus 315 ~l~g~~l~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l-~~~f---~~~G 389 (544)
.+.-..|.|.+..- +................. ..... -.......++.|.|.-- ..+..+++ .+.+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~-~~~L~---~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYL-VASLQ---YNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHH-hhhhh---heeecCCcceEEEEEec-CccchhHHHHHhhhhhccCC
Confidence 35556666654321 111000000000000000 00000 00111223345666533 34433333 2222 2222
Q ss_pred ----CceEEEEccCCC--CCCcceEEEEEEcChHHHHHHHHHhC
Q 009076 390 ----PLRGFDLVKDRE--TGNSKGYAFCVYQDLSVTDIACAALN 427 (544)
Q Consensus 390 ----~i~~v~i~~~~~--~g~~~g~afV~f~~~e~A~~A~~~l~ 427 (544)
.|+.|.|+.... ..-++.||.+.|-++..|...+..|.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 267777776432 23357899999999999999987775
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.58 E-value=83 Score=29.61 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=36.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCc-eEEEEccCCCCCCcceEEEEEEcChH
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPL-RGFDLVKDRETGNSKGYAFCVYQDLS 417 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~e 417 (544)
.-|+|+||+-++--.||+..+.+.|.+ ..+.+.-. .|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~------~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH------FGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecC------CcceeEecCCcc
Confidence 359999999999999999999987764 34443322 678999997643
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.92 E-value=27 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhcCCceee
Q 009076 497 YEEILEDMRQEGGKFAFCSPT 517 (544)
Q Consensus 497 ~~~~~~~l~~~f~~fG~V~~i 517 (544)
-+.|..+|++.|+..|.|.-+
T Consensus 4 re~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 4 REEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred HHHHHHHHHHHHHhcCcEEEE
Confidence 356778999999999999776
No 232
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=52.92 E-value=35 Score=24.77 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 379 AQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 379 e~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
++|.+.|...|. |..|.-+..+.++.....-||+.....+... .++=..+++..|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 578888988886 7777777776567777888999888766333 3455678899999987643
No 233
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.00 E-value=61 Score=33.81 Aligned_cols=77 Identities=25% Similarity=0.385 Sum_probs=55.0
Q ss_pred hhccceEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCC----------------------------
Q 009076 241 TRHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE---------------------------- 291 (544)
Q Consensus 241 ~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~---------------------------- 291 (544)
....++|-|-||.| .+...+|..+|+.|-+ +++.|+.+.+.++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP--------~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~ 242 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLP--------KGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKE 242 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcC--------CCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcc
Confidence 34577899999999 6799999999999843 3334444432110
Q ss_pred ------------------------C-cEEEEEecCHHHHHHHH-HcCCceeCC--ceeEEcC
Q 009076 292 ------------------------K-KFAFVEMRSVEEASNAM-ALDGIIFEG--APVKVRR 325 (544)
Q Consensus 292 ------------------------k-g~afV~f~~~~~A~~Al-~l~~~~l~g--~~l~v~~ 325 (544)
+ -||.|+|.+++.|.+.. .-.|+.|.. ..|-+.+
T Consensus 243 s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 243 SESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred cccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 27999999999999998 888988864 3444444
No 234
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=48.26 E-value=66 Score=31.86 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=30.4
Q ss_pred eEEEEEEcChHHHHHHHHHhCCCeeC--CeEEEEEEcC
Q 009076 407 GYAFCVYQDLSVTDIACAALNGIKMG--DKTLTVRRAN 442 (544)
Q Consensus 407 g~afV~f~~~e~A~~A~~~l~g~~~~--g~~i~v~~~~ 442 (544)
-||.|++.+++.+.....++.|..+. +..+.+.|..
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 48999999999999999999999884 5677777763
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.15 E-value=42 Score=33.13 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=44.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMAL 311 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l 311 (544)
-...|-|.++|.....+||...|+.|+.- +| .|..+ ....||..|.+...|..||.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~k-gf-------dIkWv----DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNK-GF-------DIKWV----DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcC-Cc-------eeEEe----ecceeEEeecchHHHHHHhhc
Confidence 34688999999999889999999999752 22 23322 234799999999999999966
No 236
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=47.05 E-value=36 Score=24.65 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 379 AQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 379 e~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
++|.+.|..+|. +..|.-+....++..-..-||+.....+-.. .|+=..|+|+.|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 468889999986 7778777776666677788888877644333 3455677899999987643
No 237
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=44.58 E-value=31 Score=26.67 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=34.8
Q ss_pred cCCChHHHHHHHHHHHHHHhhcCCceee--------cc----CceEEEEecCCCCCC
Q 009076 490 ELKDDEEYEEILEDMRQEGGKFAFCSPT--------FC----YKESGLIYTDRRLHN 534 (544)
Q Consensus 490 ~l~~~~~~~~~~~~l~~~f~~fG~V~~i--------~~----~g~a~V~f~~~~~A~ 534 (544)
++++++.|++-.+.+...|++||.=.=+ .| ...+.|+|.+.+.|.
T Consensus 11 dv~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar 67 (96)
T COG5470 11 DVRDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAAR 67 (96)
T ss_pred eecCHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHH
Confidence 4678889999999999999999854333 33 446899999998774
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.34 E-value=54 Score=26.72 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=27.9
Q ss_pred EEEEcCCCCCC---------cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHH
Q 009076 366 RIFVGGLPYYF---------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 418 (544)
Q Consensus 366 ~l~v~nl~~~~---------~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~ 418 (544)
+++|-|++... +-+.|.+.|..|..++ +..+... .-+.|+++|+|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 67788886543 4589999999999876 4444442 2358999999987543
No 239
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.80 E-value=4.5 Score=41.38 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=53.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
.+.|||.|++++++-.+|..+|..+..+..+.+-....-..-..+++|.|.---....|+-+||+..+.-..+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 3579999999999999999999998777766554332111223467899988777778888888877644443
No 240
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.33 E-value=2.6e+02 Score=24.71 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=49.2
Q ss_pred eEEEcCCCCCC-cHHHHHHHHHH-HHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc-ee
Q 009076 246 RVYVGGLPPTA-NEQSVATFFSQ-VMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA-PV 321 (544)
Q Consensus 246 ~l~V~nLp~~~-te~~L~~~f~~-~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~-~l 321 (544)
++++.+++..+ ++...+..|.. |-.+ +...-.+.-++.++.-|.|.+++.|..|. .+++..|.|+ .+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~---------n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQI---------NEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhh---------CcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 47777887755 33344443333 2111 12333345567788899999999999999 9999999888 66
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
+.-++...
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 66555443
No 241
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=38.74 E-value=36 Score=33.59 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=48.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEccCCCCC---CcceEEEEEEcChHHHHHHHHHhCCCee
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETG---NSKGYAFCVYQDLSVTDIACAALNGIKM 431 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~~~~~~g---~~~g~afV~f~~~e~A~~A~~~l~g~~~ 431 (544)
..+.|.+||+..++++|.+-..+|-. +.+..+... ..+ ...+.|||.|...++...-...++|++|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a-~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKA-DESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccc-cccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 47999999999999999999888654 444444422 111 1246799999999997777777788776
No 242
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.91 E-value=1.5e+02 Score=22.62 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=41.3
Q ss_pred EEcCCCCCCcHHHHHHHHHh-cCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHh
Q 009076 368 FVGGLPYYFTEAQIRELLES-FGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426 (544)
Q Consensus 368 ~v~nl~~~~~ee~l~~~f~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l 426 (544)
++--.+..++..+|++.++. ||. |..|..+..+ ...--|||.+.....|......|
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 44446788999999999998 675 7777766653 12457999999998888765443
No 243
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=34.09 E-value=52 Score=30.22 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=3.7
Q ss_pred eCCceeEE
Q 009076 316 FEGAPVKV 323 (544)
Q Consensus 316 l~g~~l~v 323 (544)
|.|+.++|
T Consensus 197 L~gRerkI 204 (293)
T KOG1882|consen 197 LDGRERKI 204 (293)
T ss_pred ecCceeee
Confidence 44444444
No 244
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.51 E-value=6.9 Score=38.84 Aligned_cols=75 Identities=5% Similarity=-0.259 Sum_probs=57.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..++..||...++.++.-+|+.||.|..+.+.+....|...-++||...+. +|..++.-+....+.|..++|..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcC
Confidence 567888999999999999999999999998887766677677788876553 445566566666666766676665
No 245
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=33.44 E-value=1.9e+02 Score=21.56 Aligned_cols=57 Identities=11% Similarity=0.090 Sum_probs=41.1
Q ss_pred EEEcCCCCCCcHHHHHHHHHh-cCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHh
Q 009076 367 IFVGGLPYYFTEAQIRELLES-FGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 426 (544)
Q Consensus 367 l~v~nl~~~~~ee~l~~~f~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l 426 (544)
-|+-..+...+..+|+..++. ||. |..|..+.-+ ...--|||.+..-..|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 445557888999999999998 664 6777666553 12457999999888887655443
No 246
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=32.84 E-value=1.3e+02 Score=23.01 Aligned_cols=33 Identities=9% Similarity=-0.070 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHh-hcCCceee-ccCceE-EEEecC
Q 009076 497 YEEILEDMRQEGG-KFAFCSPT-FCYKES-GLIYTD 529 (544)
Q Consensus 497 ~~~~~~~l~~~f~-~fG~V~~i-~~~g~a-~V~f~~ 529 (544)
.+.|..-|+++|. +||.-=++ .|.+++ ||++.+
T Consensus 36 ~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~ 71 (90)
T KOG3430|consen 36 EKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHET 71 (90)
T ss_pred hHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeec
Confidence 4556778999996 79998777 444443 666654
No 247
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.55 E-value=75 Score=24.10 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=24.5
Q ss_pred CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCe
Q 009076 390 PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK 430 (544)
Q Consensus 390 ~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~ 430 (544)
.|.++....+ -+||.|||=.+..+...|+..+.+..
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 3666666544 48999999999999999997765543
No 248
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.88 E-value=1.9e+02 Score=28.29 Aligned_cols=16 Identities=6% Similarity=-0.085 Sum_probs=8.0
Q ss_pred EEEEEEcChHHHHHHH
Q 009076 408 YAFCVYQDLSVTDIAC 423 (544)
Q Consensus 408 ~afV~f~~~e~A~~A~ 423 (544)
.|||.-.+---++.|+
T Consensus 363 ~GYVMSGSRHrrMeAv 378 (426)
T KOG2812|consen 363 VGYVMSGSRHRRMEAV 378 (426)
T ss_pred cceeeccchHHHHHHH
Confidence 3455555554454554
No 249
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=28.10 E-value=27 Score=39.07 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=9.9
Q ss_pred CCCCcHHHHHHHHHhcCCceE
Q 009076 373 PYYFTEAQIRELLESFGPLRG 393 (544)
Q Consensus 373 ~~~~~ee~l~~~f~~~G~i~~ 393 (544)
|..-.--+|..++.+|-....
T Consensus 446 Ptrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 446 PTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCHHHHHHHHHHHHHHHhhcC
Confidence 433333455555555544333
No 250
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=25.91 E-value=2.3e+02 Score=23.57 Aligned_cols=31 Identities=3% Similarity=-0.084 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHh-hcCCceee-ccCceE-EEEec
Q 009076 498 EEILEDMRQEGG-KFAFCSPT-FCYKES-GLIYT 528 (544)
Q Consensus 498 ~~~~~~l~~~f~-~fG~V~~i-~~~g~a-~V~f~ 528 (544)
.+|..-|+.+|. +||..=+| .|.+++ ||++.
T Consensus 69 kdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe 102 (128)
T PLN03058 69 KRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHS 102 (128)
T ss_pred HHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEc
Confidence 567788999997 79999887 444443 66655
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.68 E-value=45 Score=32.95 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=44.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeec--------CCCcEEEEEecCHHHHHHHH-HcCCc
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN--------HEKKFAFVEMRSVEEASNAM-ALDGI 314 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~--------~~kg~afV~f~~~~~A~~Al-~l~~~ 314 (544)
.+.|.|.+||+.+++.+|.+.+.+|-. .+....+. .-.+.|||.|...++..... .++|+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~-----------~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPE-----------HVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCcc-----------ccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 467999999999999999988777522 12111111 11367899999999977777 78887
Q ss_pred eeC
Q 009076 315 IFE 317 (544)
Q Consensus 315 ~l~ 317 (544)
.|.
T Consensus 76 ifl 78 (376)
T KOG1295|consen 76 IFL 78 (376)
T ss_pred EEe
Confidence 653
No 252
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.85 E-value=85 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=27.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i 396 (544)
.+||+-|+|..+|++.|..+.+.+|.+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 47999999999999999999999997655433
No 253
>PF14893 PNMA: PNMA
Probab=21.90 E-value=81 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHH
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQV 268 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~ 268 (544)
.+.|.|.|||.++++++|.+.+..-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHh
Confidence 5679999999999999999988863
No 254
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.84 E-value=74 Score=27.83 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCceee----------ccCceEEEEecCCCCCCC
Q 009076 498 EEILEDMRQEGGKFAFCSPT----------FCYKESGLIYTDRRLHNP 535 (544)
Q Consensus 498 ~~~~~~l~~~f~~fG~V~~i----------~~~g~a~V~f~~~~~A~a 535 (544)
.+.+++|..+-+ |++..| .-.|.+||+|.+.++|.|
T Consensus 120 d~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a 165 (205)
T KOG4213|consen 120 DDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFA 165 (205)
T ss_pred HHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHh
Done!