Query 009076
Match_columns 544
No_of_seqs 402 out of 4252
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 18:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.4E-35 1.2E-39 284.7 20.4 218 239-537 17-243 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 4.5E-34 1.5E-38 278.0 18.2 224 240-537 37-271 (292)
3 2yh0_A Splicing factor U2AF 65 100.0 2.3E-31 7.9E-36 243.5 25.7 193 243-445 3-195 (198)
4 2g4b_A Splicing factor U2AF 65 100.0 2.2E-31 7.4E-36 237.9 22.2 169 243-441 3-171 (172)
5 4f02_A Polyadenylate-binding p 100.0 1.4E-31 4.6E-36 247.3 14.3 165 243-442 14-179 (213)
6 3md3_A Nuclear and cytoplasmic 100.0 4E-31 1.4E-35 234.7 15.7 164 245-442 1-165 (166)
7 1b7f_A Protein (SXL-lethal pro 100.0 8.6E-31 2.9E-35 233.0 14.9 163 244-441 3-168 (168)
8 2qfj_A FBP-interacting repress 100.0 2.6E-31 8.8E-36 246.7 11.8 186 237-446 21-207 (216)
9 1l3k_A Heterogeneous nuclear r 100.0 6.7E-31 2.3E-35 240.0 14.3 176 241-446 10-185 (196)
10 1fje_B Nucleolin RBD12, protei 100.0 4.3E-30 1.5E-34 230.1 18.6 164 242-444 11-174 (175)
11 1fxl_A Paraneoplastic encephal 100.0 1.4E-30 4.8E-35 231.3 14.9 163 244-441 2-167 (167)
12 2cjk_A Nuclear polyadenylated 100.0 8E-31 2.7E-35 233.0 9.2 165 243-444 2-166 (167)
13 3nmr_A Cugbp ELAV-like family 100.0 2.3E-29 7.8E-34 225.3 13.9 165 243-442 2-175 (175)
14 3tyt_A Heterogeneous nuclear r 100.0 2.1E-28 7.1E-33 223.3 17.7 185 243-441 3-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 1E-27 3.5E-32 223.9 20.8 185 242-443 32-227 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-27 5.3E-32 230.6 20.3 186 242-442 7-281 (282)
17 2ghp_A U4/U6 snRNA-associated 100.0 8.6E-28 2.9E-32 233.6 16.7 172 243-444 116-291 (292)
18 1qm9_A Polypyrimidine tract-bi 100.0 1.5E-27 5E-32 218.1 16.4 183 244-443 3-196 (198)
19 3smz_A Protein raver-1, ribonu 99.9 1.6E-27 5.4E-32 230.8 15.8 170 243-445 94-265 (284)
20 3sde_A Paraspeckle component 1 99.9 2.3E-27 7.7E-32 226.1 16.1 156 242-445 20-180 (261)
21 4f02_A Polyadenylate-binding p 99.9 3.1E-23 1.1E-27 191.2 13.1 141 362-537 13-160 (213)
22 1b7f_A Protein (SXL-lethal pro 99.9 6.2E-23 2.1E-27 182.0 11.8 137 364-537 3-148 (168)
23 1fxl_A Paraneoplastic encephal 99.9 9.6E-23 3.3E-27 180.6 12.7 137 364-537 2-147 (167)
24 1l3k_A Heterogeneous nuclear r 99.9 9.4E-23 3.2E-27 185.8 11.3 143 363-537 12-163 (196)
25 3md3_A Nuclear and cytoplasmic 99.9 4E-22 1.4E-26 176.4 12.0 137 365-537 1-146 (166)
26 2qfj_A FBP-interacting repress 99.9 6.8E-22 2.3E-26 183.0 13.1 147 365-537 29-184 (216)
27 2kn4_A Immunoglobulin G-bindin 99.9 2E-21 7E-26 170.1 15.2 141 289-445 10-151 (158)
28 3tyt_A Heterogeneous nuclear r 99.9 3.5E-22 1.2E-26 182.0 7.4 157 364-537 4-182 (205)
29 3nmr_A Cugbp ELAV-like family 99.9 1.1E-21 3.9E-26 175.1 10.2 137 365-537 4-153 (175)
30 3pgw_A U1-A; protein-RNA compl 99.8 9.2E-21 3.2E-25 182.9 15.4 81 362-445 7-91 (282)
31 2cjk_A Nuclear polyadenylated 99.8 5.5E-22 1.9E-26 175.7 5.3 134 365-537 4-146 (167)
32 2adc_A Polypyrimidine tract-bi 99.8 1.8E-20 6.2E-25 174.7 12.4 161 362-537 32-206 (229)
33 1fje_B Nucleolin RBD12, protei 99.8 3.5E-21 1.2E-25 171.9 6.9 139 362-537 11-153 (175)
34 3sde_A Paraspeckle component 1 99.8 1.6E-20 5.5E-25 178.7 11.6 127 362-537 20-154 (261)
35 2i2y_A Fusion protein consists 99.8 5.7E-20 2E-24 159.2 12.3 137 289-444 10-148 (150)
36 2g4b_A Splicing factor U2AF 65 99.8 4.4E-20 1.5E-24 164.2 11.3 130 364-537 4-153 (172)
37 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-19 3.8E-24 144.7 11.2 79 365-443 20-98 (99)
38 1qm9_A Polypyrimidine tract-bi 99.8 4.2E-20 1.4E-24 168.4 10.0 158 365-537 4-175 (198)
39 2yh0_A Splicing factor U2AF 65 99.8 6.5E-20 2.2E-24 167.2 9.8 150 364-537 4-173 (198)
40 2lxi_A RNA-binding protein 10; 99.8 4.1E-19 1.4E-23 139.2 8.8 81 365-445 2-84 (91)
41 3s8s_A Histone-lysine N-methyl 99.8 1.4E-18 4.6E-23 141.1 11.8 80 363-442 5-84 (110)
42 2lkz_A RNA-binding protein 5; 99.8 1.1E-18 3.9E-23 137.0 9.8 80 364-443 9-94 (95)
43 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.3E-18 2.1E-22 131.7 10.6 81 364-444 6-86 (87)
44 3md1_A Nuclear and cytoplasmic 99.7 9E-18 3.1E-22 129.5 11.0 80 365-444 2-81 (83)
45 2cqc_A Arginine/serine-rich sp 99.7 1.2E-17 4.1E-22 132.4 11.9 83 361-443 12-94 (95)
46 2x1f_A MRNA 3'-END-processing 99.7 1.2E-17 4.1E-22 132.6 11.5 82 364-445 2-83 (96)
47 2dgo_A Cytotoxic granule-assoc 99.7 2.2E-17 7.5E-22 135.9 13.3 86 362-447 13-98 (115)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4.1E-22 134.3 11.4 85 362-446 10-94 (102)
49 2lea_A Serine/arginine-rich sp 99.7 1.9E-18 6.5E-23 146.0 7.0 123 294-446 6-129 (135)
50 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4.2E-22 132.1 11.2 80 362-441 14-93 (94)
51 1whw_A Hypothetical protein ri 99.7 1.6E-17 5.5E-22 132.8 12.0 84 363-446 7-90 (99)
52 2cq0_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 134.6 11.2 86 361-446 12-97 (103)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1E-17 3.5E-22 129.8 10.4 79 363-441 6-84 (85)
54 4f25_A Polyadenylate-binding p 99.7 1.6E-18 5.4E-23 142.5 6.0 108 244-380 5-113 (115)
55 2dnm_A SRP46 splicing factor; 99.7 1.1E-17 3.9E-22 134.7 10.8 84 362-445 11-94 (103)
56 2dnz_A Probable RNA-binding pr 99.7 1.2E-17 4.2E-22 132.4 10.8 84 363-446 4-87 (95)
57 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-17 4.9E-22 133.9 11.2 86 361-446 9-94 (102)
58 3p5t_L Cleavage and polyadenyl 99.7 2.3E-18 8E-23 134.8 6.3 80 366-445 3-84 (90)
59 1x5t_A Splicing factor 3B subu 99.7 1.6E-17 5.3E-22 132.1 11.1 84 363-446 4-88 (96)
60 2cpz_A CUG triplet repeat RNA- 99.7 2.4E-17 8.3E-22 135.6 12.6 85 362-446 23-107 (115)
61 1x5u_A Splicing factor 3B subu 99.7 1.9E-17 6.6E-22 133.9 11.6 85 361-445 12-96 (105)
62 1sjq_A Polypyrimidine tract-bi 99.7 1.2E-17 4.1E-22 132.3 9.9 81 362-448 14-96 (105)
63 4f25_A Polyadenylate-binding p 99.7 1.5E-17 5E-22 136.7 10.8 80 364-445 5-84 (115)
64 2wbr_A GW182, gawky, LD47780P; 99.7 1.8E-17 6.2E-22 124.6 10.2 72 364-441 7-78 (89)
65 2dgs_A DAZ-associated protein 99.7 2.4E-17 8.2E-22 131.7 11.7 84 362-446 8-91 (99)
66 3r27_A HnRNP L, heterogeneous 99.7 2E-17 6.7E-22 129.6 10.8 77 362-444 19-97 (100)
67 1x4h_A RNA-binding protein 28; 99.7 3.9E-17 1.3E-21 133.6 12.9 86 361-446 12-103 (111)
68 2div_A TRNA selenocysteine ass 99.7 1.7E-17 6E-22 132.6 10.4 83 362-444 7-94 (99)
69 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-17 8.7E-22 133.4 11.5 85 362-446 11-98 (106)
70 2la6_A RNA-binding protein FUS 99.7 2.4E-17 8.2E-22 131.7 11.0 80 362-441 11-98 (99)
71 2jrs_A RNA-binding protein 39; 99.7 1.7E-17 5.7E-22 134.5 10.1 84 361-444 23-106 (108)
72 2do4_A Squamous cell carcinoma 99.7 4.8E-17 1.7E-21 130.2 12.7 83 362-445 15-97 (100)
73 3pgw_S U1-70K; protein-RNA com 99.7 3.6E-18 1.2E-22 172.9 6.8 84 362-445 100-183 (437)
74 2cph_A RNA binding motif prote 99.7 4.8E-17 1.6E-21 132.1 12.1 85 362-446 13-99 (107)
75 2dgx_A KIAA0430 protein; RRM d 99.7 6.3E-17 2.2E-21 128.3 12.1 80 363-445 8-91 (96)
76 2cpf_A RNA binding motif prote 99.7 2.9E-17 9.8E-22 131.0 10.1 84 363-446 4-90 (98)
77 2cpe_A RNA-binding protein EWS 99.7 7.1E-17 2.4E-21 132.4 12.5 85 362-446 13-105 (113)
78 3ns6_A Eukaryotic translation 99.7 9.1E-18 3.1E-22 134.1 6.9 77 365-441 7-90 (100)
79 2ywk_A Putative RNA-binding pr 99.7 4E-17 1.4E-21 129.4 10.5 80 362-442 14-93 (95)
80 1p27_B RNA-binding protein 8A; 99.7 2.8E-17 9.5E-22 133.2 9.7 82 363-444 22-103 (106)
81 2cq1_A PTB-like protein L; RRM 99.7 7E-17 2.4E-21 128.2 11.7 82 360-447 11-94 (101)
82 2fy1_A RNA-binding motif prote 99.7 4.7E-17 1.6E-21 133.7 11.0 83 363-446 6-88 (116)
83 2dnh_A Bruno-like 5, RNA bindi 99.7 8.5E-17 2.9E-21 130.1 12.3 83 362-445 13-98 (105)
84 2cqp_A RNA-binding protein 12; 99.7 2.9E-17 1E-21 131.0 9.5 83 362-444 13-95 (98)
85 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.7E-16 5.7E-21 127.8 14.0 83 362-446 13-95 (103)
86 3ulh_A THO complex subunit 4; 99.7 5.9E-17 2E-21 131.5 11.3 80 362-442 27-106 (107)
87 2dng_A Eukaryotic translation 99.7 6.2E-17 2.1E-21 130.3 11.3 83 362-446 13-95 (103)
88 2d9p_A Polyadenylate-binding p 99.7 5.9E-17 2E-21 130.5 10.9 83 362-446 13-95 (103)
89 1oo0_B CG8781-PA, drosophila Y 99.7 4.8E-17 1.6E-21 132.7 10.5 82 363-444 25-106 (110)
90 2kxn_B Transformer-2 protein h 99.7 2.5E-17 8.7E-22 137.8 8.8 84 361-444 43-126 (129)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.5E-17 1.9E-21 142.6 11.4 141 297-446 11-154 (165)
92 2dh8_A DAZ-associated protein 99.7 5.6E-17 1.9E-21 131.1 10.4 86 361-447 13-98 (105)
93 3ucg_A Polyadenylate-binding p 99.7 7E-17 2.4E-21 126.3 10.6 79 365-444 7-85 (89)
94 1wi8_A EIF-4B, eukaryotic tran 99.7 6.9E-17 2.3E-21 130.3 10.8 83 362-446 13-96 (104)
95 4a8x_A RNA-binding protein wit 99.7 5E-17 1.7E-21 126.8 9.7 81 364-444 4-85 (88)
96 2cq3_A RNA-binding protein 9; 99.7 1.8E-16 6.1E-21 127.6 13.2 84 361-446 12-95 (103)
97 2khc_A Testis-specific RNP-typ 99.7 7.8E-17 2.7E-21 133.3 11.4 80 362-441 38-117 (118)
98 2ek1_A RNA-binding protein 12; 99.7 1.9E-17 6.3E-22 131.3 7.3 81 362-442 13-93 (95)
99 1x4d_A Matrin 3; structural ge 99.7 4.2E-17 1.4E-21 129.3 9.3 77 362-444 13-92 (102)
100 3s7r_A Heterogeneous nuclear r 99.7 9.7E-17 3.3E-21 124.8 11.2 79 362-441 9-87 (87)
101 2cqd_A RNA-binding region cont 99.7 1.4E-16 4.9E-21 131.2 12.4 82 362-444 15-96 (116)
102 2do0_A HnRNP M, heterogeneous 99.7 2.1E-16 7.1E-21 129.9 13.3 82 362-444 13-94 (114)
103 2dhg_A TRNA selenocysteine ass 99.7 5.6E-17 1.9E-21 130.9 9.6 83 363-446 8-92 (104)
104 2dgv_A HnRNP M, heterogeneous 99.7 9.6E-17 3.3E-21 126.3 10.7 82 363-446 7-88 (92)
105 2kt5_A RNA and export factor-b 99.7 4.2E-16 1.4E-20 130.0 14.8 85 361-446 32-116 (124)
106 3n9u_C Cleavage and polyadenyl 99.7 8.9E-17 3E-21 139.0 11.0 80 363-442 54-135 (156)
107 2mss_A Protein (musashi1); RNA 99.7 2.9E-17 9.9E-22 123.9 6.8 75 366-441 1-75 (75)
108 2cqg_A TDP-43, TAR DNA-binding 99.7 3.2E-16 1.1E-20 126.2 13.3 85 361-447 12-96 (103)
109 2ad9_A Polypyrimidine tract-bi 99.7 9.4E-17 3.2E-21 130.6 10.2 80 362-447 29-110 (119)
110 1wex_A Hypothetical protein (r 99.7 1.1E-16 3.9E-21 127.9 10.4 79 362-446 13-93 (104)
111 3ex7_B RNA-binding protein 8A; 99.7 8.8E-17 3E-21 134.6 9.6 84 363-446 21-104 (126)
112 1p1t_A Cleavage stimulation fa 99.7 6.3E-17 2.2E-21 130.6 8.4 80 365-444 9-88 (104)
113 2rs2_A Musashi-1, RNA-binding 99.7 1.2E-16 4.2E-21 129.7 10.1 85 362-447 23-107 (109)
114 1u6f_A Tcubp1, RNA-binding pro 99.7 3.8E-16 1.3E-20 133.2 13.7 86 361-446 39-124 (139)
115 2dgw_A Probable RNA-binding pr 99.7 3E-16 1E-20 123.2 11.9 79 363-444 9-87 (91)
116 1s79_A Lupus LA protein; RRM, 99.7 4.9E-17 1.7E-21 130.1 7.3 75 365-441 12-86 (103)
117 2cpi_A CCR4-NOT transcription 99.7 1.2E-16 4.2E-21 130.3 9.5 84 363-446 14-103 (111)
118 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-16 5.6E-21 130.7 10.3 77 363-442 7-83 (115)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.3E-16 7.8E-21 134.9 11.6 82 360-441 59-140 (140)
120 2err_A Ataxin-2-binding protei 99.7 2E-16 6.7E-21 128.5 10.6 82 361-444 26-107 (109)
121 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.9E-16 1E-20 136.7 12.3 84 362-445 37-120 (156)
122 2cq4_A RNA binding motif prote 99.7 1.2E-16 4.2E-21 131.2 9.3 76 365-441 26-101 (114)
123 2nlw_A Eukaryotic translation 99.7 1.8E-16 6.3E-21 127.8 9.9 79 364-444 15-100 (105)
124 1x4e_A RNA binding motif, sing 99.7 2.1E-17 7.1E-22 128.0 4.1 79 363-441 4-82 (85)
125 1x4a_A Splicing factor, argini 99.7 5.6E-16 1.9E-20 126.1 12.8 81 362-445 20-100 (109)
126 2m2b_A RNA-binding protein 10; 99.7 6.2E-17 2.1E-21 136.3 7.1 82 362-444 21-108 (131)
127 4fxv_A ELAV-like protein 1; RN 99.7 3E-17 1E-21 130.6 4.8 80 242-327 17-97 (99)
128 2ki2_A SS-DNA binding protein 99.7 2.9E-17 9.9E-22 128.7 4.6 81 365-446 2-82 (90)
129 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.7E-17 2.3E-21 122.6 5.9 76 365-441 1-76 (77)
130 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.5E-17 1.9E-21 129.7 5.6 81 362-444 17-98 (100)
131 1wez_A HnRNP H', FTP-3, hetero 99.7 1.7E-16 5.7E-21 127.0 8.1 81 361-444 12-92 (102)
132 2db1_A Heterogeneous nuclear r 99.7 2.7E-16 9.4E-21 129.5 9.5 78 362-441 15-95 (118)
133 2cpy_A RNA-binding protein 12; 99.7 2.3E-16 7.9E-21 129.3 9.0 79 362-442 13-92 (114)
134 2a3j_A U1 small nuclear ribonu 99.7 3.7E-16 1.3E-20 129.6 10.2 80 362-444 27-110 (127)
135 1x4b_A Heterogeneous nuclear r 99.7 3.3E-16 1.1E-20 129.0 9.9 82 364-446 27-108 (116)
136 2cpj_A Non-POU domain-containi 99.7 4.1E-16 1.4E-20 124.5 10.1 80 361-446 12-91 (99)
137 2dis_A Unnamed protein product 99.7 3.5E-16 1.2E-20 127.4 9.6 82 364-445 8-93 (109)
138 2lxi_A RNA-binding protein 10; 99.7 1.9E-16 6.4E-21 123.9 7.6 80 244-329 1-83 (91)
139 1wg5_A Heterogeneous nuclear r 99.6 3.3E-16 1.1E-20 126.1 9.1 83 362-446 13-96 (104)
140 1x4c_A Splicing factor, argini 99.6 1E-15 3.5E-20 124.2 12.1 76 363-445 14-94 (108)
141 2jwn_A Embryonic polyadenylate 99.6 3.6E-16 1.2E-20 130.5 9.7 79 365-444 37-115 (124)
142 2fc9_A NCL protein; structure 99.6 6.1E-16 2.1E-20 124.0 10.4 81 361-445 12-92 (101)
143 2ytc_A PRE-mRNA-splicing facto 99.6 6.5E-16 2.2E-20 119.5 10.2 74 362-441 10-84 (85)
144 1why_A Hypothetical protein ri 99.6 5.8E-16 2E-20 123.1 10.0 77 362-444 15-93 (97)
145 2jvr_A Nucleolar protein 3; RN 99.6 5.8E-16 2E-20 125.0 9.9 78 363-444 27-105 (111)
146 2krb_A Eukaryotic translation 99.6 1.3E-16 4.4E-21 122.2 5.5 72 365-438 2-80 (81)
147 2dnp_A RNA-binding protein 14; 99.6 1.4E-15 4.9E-20 118.9 11.5 77 362-446 7-83 (90)
148 1x5o_A RNA binding motif, sing 99.6 7.6E-16 2.6E-20 126.4 10.4 81 362-443 23-111 (114)
149 1iqt_A AUF1, heterogeneous nuc 99.6 1.7E-16 5.7E-21 119.7 5.8 75 366-441 1-75 (75)
150 2dnq_A RNA-binding protein 4B; 99.6 9.4E-16 3.2E-20 120.0 10.1 77 362-446 6-82 (90)
151 1whx_A Hypothetical protein ri 99.6 4.9E-16 1.7E-20 126.5 8.7 78 365-448 11-88 (111)
152 2dnn_A RNA-binding protein 12; 99.6 5.7E-16 1.9E-20 124.9 9.0 74 365-441 17-90 (109)
153 1x4g_A Nucleolysin TIAR; struc 99.6 1.3E-15 4.4E-20 123.9 11.1 78 363-446 24-101 (109)
154 1fj7_A Nucleolin RBD1, protein 99.6 1.4E-16 4.6E-21 127.8 5.1 81 363-445 16-96 (101)
155 2hgl_A HNRPF protein, heteroge 99.6 4.5E-16 1.5E-20 130.7 8.4 77 363-441 43-122 (136)
156 1x4f_A Matrin 3; structural ge 99.6 2.1E-16 7E-21 127.1 6.0 79 361-445 22-103 (112)
157 1wel_A RNA-binding protein 12; 99.6 1.8E-16 6.1E-21 132.2 5.7 80 362-442 23-102 (124)
158 2fc8_A NCL protein; structure 99.6 1.3E-15 4.4E-20 122.3 10.5 81 362-445 13-93 (102)
159 2dgt_A RNA-binding protein 30; 99.6 3.3E-15 1.1E-19 117.4 12.5 76 362-445 8-83 (92)
160 2dgu_A Heterogeneous nuclear r 99.6 2.7E-15 9.2E-20 120.6 12.2 77 362-446 9-85 (103)
161 1nu4_A U1A RNA binding domain; 99.6 6.1E-16 2.1E-20 123.0 7.9 79 363-444 7-89 (97)
162 2wbr_A GW182, gawky, LD47780P; 99.6 1.4E-15 4.9E-20 114.3 9.0 72 244-327 7-79 (89)
163 2lmi_A GRSF-1, G-rich sequence 99.6 3.4E-16 1.2E-20 126.7 6.1 78 362-441 9-89 (107)
164 2la4_A Nuclear and cytoplasmic 99.6 1.1E-15 3.7E-20 122.5 9.0 75 363-443 26-100 (101)
165 2diu_A KIAA0430 protein; struc 99.6 1.3E-15 4.3E-20 115.6 8.6 73 364-446 8-86 (96)
166 3q2s_C Cleavage and polyadenyl 99.6 6.4E-16 2.2E-20 142.8 8.5 79 364-442 68-148 (229)
167 2e5j_A Methenyltetrahydrofolat 99.6 2.1E-15 7.3E-20 119.7 10.3 78 362-444 17-94 (97)
168 2cq2_A Hypothetical protein LO 99.6 1.8E-15 6.2E-20 121.5 9.9 78 362-445 23-107 (114)
169 2jvo_A Nucleolar protein 3; nu 99.6 1.8E-15 6.1E-20 122.4 10.0 75 362-444 29-103 (108)
170 2cpx_A Hypothetical protein FL 99.6 3.7E-16 1.3E-20 128.5 6.1 85 362-446 23-107 (115)
171 2xnq_A Nuclear polyadenylated 99.6 3.3E-15 1.1E-19 118.4 11.3 74 363-444 21-95 (97)
172 2hvz_A Splicing factor, argini 99.6 9.2E-16 3.1E-20 122.9 8.1 76 365-445 1-76 (101)
173 2f3j_A RNA and export factor b 99.6 1.1E-15 3.8E-20 135.2 9.3 81 363-444 87-167 (177)
174 2j8a_A Histone-lysine N-methyl 99.6 1.2E-15 4.2E-20 122.5 8.3 78 365-442 3-94 (136)
175 1fjc_A Nucleolin RBD2, protein 99.6 1.3E-15 4.5E-20 120.8 7.9 78 363-445 15-92 (96)
176 2hvz_A Splicing factor, argini 99.6 6.1E-16 2.1E-20 124.0 6.0 75 245-330 1-76 (101)
177 2cqh_A IGF-II mRNA-binding pro 99.6 2.2E-15 7.4E-20 118.7 9.1 77 363-446 7-85 (93)
178 2pe8_A Splicing factor 45; RRM 99.6 4.7E-15 1.6E-19 118.7 10.8 79 363-441 7-91 (105)
179 2e44_A Insulin-like growth fac 99.6 3.7E-15 1.3E-19 118.2 10.1 78 363-444 14-92 (96)
180 2lkz_A RNA-binding protein 5; 99.6 2.2E-16 7.4E-21 124.0 2.7 80 242-327 7-93 (95)
181 3s8s_A Histone-lysine N-methyl 99.6 3.8E-16 1.3E-20 126.6 3.8 80 243-328 5-85 (110)
182 3zzy_A Polypyrimidine tract-bi 99.6 4.6E-15 1.6E-19 122.1 10.3 75 366-445 30-107 (130)
183 2dha_A FLJ20171 protein; RRM d 99.6 1.7E-15 5.9E-20 124.7 7.3 77 363-441 22-102 (123)
184 1sjq_A Polypyrimidine tract-bi 99.6 4.7E-15 1.6E-19 117.4 9.5 76 243-330 15-93 (105)
185 2cpd_A Apobec-1 stimulating pr 99.6 2E-14 6.9E-19 114.6 13.3 77 362-446 13-91 (99)
186 1wf1_A RNA-binding protein RAL 99.6 8.8E-15 3E-19 119.1 11.3 73 364-444 27-100 (110)
187 1fj7_A Nucleolin RBD1, protein 99.6 6.1E-15 2.1E-19 118.1 10.1 80 243-329 16-95 (101)
188 2lcw_A RNA-binding protein FUS 99.4 1.2E-16 4.2E-21 131.6 0.0 82 364-445 7-96 (116)
189 1x5p_A Negative elongation fac 99.6 1.5E-14 5.3E-19 114.7 12.2 77 362-446 13-89 (97)
190 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.1E-20 130.1 6.5 84 362-445 43-131 (143)
191 3lqv_A PRE-mRNA branch site pr 99.6 1.1E-15 3.8E-20 125.7 5.3 102 243-390 7-109 (115)
192 2hgn_A Heterogeneous nuclear r 99.6 6.2E-16 2.1E-20 130.2 3.8 80 363-445 45-124 (139)
193 2cpz_A CUG triplet repeat RNA- 99.6 1.8E-15 6.2E-20 124.3 6.4 82 243-330 24-106 (115)
194 2jwn_A Embryonic polyadenylate 99.6 3.1E-15 1.1E-19 124.7 7.9 85 239-329 31-115 (124)
195 2e5i_A Heterogeneous nuclear r 99.6 8.8E-15 3E-19 120.0 10.3 74 366-445 27-103 (124)
196 2hgm_A HNRPF protein, heteroge 99.6 2.5E-15 8.7E-20 123.9 7.1 78 362-442 40-119 (126)
197 2kvi_A Nuclear polyadenylated 99.6 2.9E-15 9.8E-20 118.7 7.0 75 363-445 9-84 (96)
198 3p5t_L Cleavage and polyadenyl 99.6 6.1E-16 2.1E-20 121.0 2.8 79 245-329 2-83 (90)
199 2xs2_A Deleted in azoospermia- 99.6 3.5E-15 1.2E-19 119.8 7.3 77 365-444 10-86 (102)
200 1sjr_A Polypyrimidine tract-bi 99.6 8.8E-15 3E-19 125.1 10.0 77 365-445 47-125 (164)
201 2khc_A Testis-specific RNP-typ 99.6 1.3E-15 4.3E-20 125.9 4.7 79 242-326 38-117 (118)
202 2hzc_A Splicing factor U2AF 65 99.6 2.1E-14 7.3E-19 111.5 11.3 84 242-326 4-87 (87)
203 2e5g_A U6 snRNA-specific termi 99.6 9.2E-15 3.1E-19 115.3 9.2 78 363-446 7-84 (94)
204 3r27_A HnRNP L, heterogeneous 99.6 5.2E-15 1.8E-19 115.8 7.5 75 243-329 20-97 (100)
205 2cpx_A Hypothetical protein FL 99.6 1.5E-14 5.3E-19 118.8 10.7 82 243-330 24-106 (115)
206 2mss_A Protein (musashi1); RNA 99.6 2E-15 7E-20 113.6 4.9 75 246-326 1-75 (75)
207 1wg1_A KIAA1579 protein, homol 99.6 9E-15 3.1E-19 113.7 8.7 74 364-444 5-78 (88)
208 1x5t_A Splicing factor 3B subu 99.6 2.7E-15 9.1E-20 119.0 5.8 82 243-330 4-87 (96)
209 2cpf_A RNA binding motif prote 99.6 3.8E-15 1.3E-19 118.6 6.6 82 243-330 4-89 (98)
210 1s79_A Lupus LA protein; RRM, 99.6 1.5E-15 5.2E-20 121.3 4.2 79 243-328 10-88 (103)
211 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.8E-15 6.2E-20 117.0 4.4 78 243-326 6-84 (85)
212 1whw_A Hypothetical protein ri 99.6 3.3E-15 1.1E-19 119.2 6.0 82 243-330 7-89 (99)
213 2x1f_A MRNA 3'-END-processing 99.6 2.9E-15 1E-19 118.7 5.5 81 244-330 2-83 (96)
214 3md1_A Nuclear and cytoplasmic 99.6 2.1E-15 7.3E-20 116.1 4.6 78 245-328 2-80 (83)
215 3n9u_C Cleavage and polyadenyl 99.5 2.8E-15 9.6E-20 129.6 5.3 80 243-328 54-136 (156)
216 2fy1_A RNA-binding motif prote 99.5 5.7E-15 1.9E-19 121.2 6.9 81 243-330 6-87 (116)
217 2rs2_A Musashi-1, RNA-binding 99.5 2.5E-15 8.5E-20 121.9 4.7 85 239-329 20-104 (109)
218 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.7E-15 5.9E-20 117.7 3.5 79 243-327 5-84 (87)
219 2cqc_A Arginine/serine-rich sp 99.5 3.3E-15 1.1E-19 118.3 5.2 79 243-327 14-93 (95)
220 2dnz_A Probable RNA-binding pr 99.5 3.7E-15 1.3E-19 118.0 5.5 82 243-330 4-86 (95)
221 1x5u_A Splicing factor 3B subu 99.5 3.5E-15 1.2E-19 120.5 5.3 82 243-330 14-96 (105)
222 3s7r_A Heterogeneous nuclear r 99.5 1.9E-15 6.4E-20 117.5 3.4 80 241-326 8-87 (87)
223 1u6f_A Tcubp1, RNA-binding pro 99.5 2.4E-14 8.3E-19 121.9 10.7 84 241-330 39-123 (139)
224 3ucg_A Polyadenylate-binding p 99.5 3.6E-15 1.2E-19 116.4 4.9 81 242-328 4-84 (89)
225 2cqb_A Peptidyl-prolyl CIS-tra 99.5 4E-15 1.4E-19 119.5 5.3 82 243-330 11-93 (102)
226 1x5s_A Cold-inducible RNA-bind 99.5 4.8E-15 1.6E-19 119.0 5.7 81 243-329 11-92 (102)
227 3v4m_A Splicing factor U2AF 65 99.5 2.2E-14 7.5E-19 114.9 9.5 79 363-441 4-94 (105)
228 2dgo_A Cytotoxic granule-assoc 99.5 6.4E-15 2.2E-19 121.1 6.5 84 242-331 13-97 (115)
229 2jvr_A Nucleolar protein 3; RN 99.5 1.2E-14 4E-19 117.3 7.9 75 243-327 27-103 (111)
230 3beg_B Splicing factor, argini 99.5 7.9E-15 2.7E-19 120.2 7.0 73 364-443 16-93 (115)
231 2jrs_A RNA-binding protein 39; 99.5 2.1E-15 7.1E-20 122.1 3.4 81 242-328 24-105 (108)
232 2dgs_A DAZ-associated protein 99.5 3.9E-15 1.3E-19 118.8 4.8 82 243-330 9-90 (99)
233 3ns6_A Eukaryotic translation 99.5 1.5E-15 5.2E-20 121.2 2.4 79 243-327 5-91 (100)
234 2div_A TRNA selenocysteine ass 99.5 4.6E-15 1.6E-19 118.4 5.1 80 243-328 8-93 (99)
235 1x4h_A RNA-binding protein 28; 99.5 9.3E-15 3.2E-19 119.3 6.8 82 243-330 14-102 (111)
236 2la4_A Nuclear and cytoplasmic 99.5 2.3E-14 7.8E-19 114.7 8.8 74 243-328 26-100 (101)
237 2ek1_A RNA-binding protein 12; 99.5 5.8E-15 2E-19 116.8 5.1 78 244-327 15-93 (95)
238 2hzc_A Splicing factor U2AF 65 99.5 2.1E-14 7E-19 111.6 8.1 70 364-440 6-86 (87)
239 2e5j_A Methenyltetrahydrofolat 99.5 1.7E-14 5.9E-19 114.5 7.8 76 243-329 18-94 (97)
240 2dgp_A Bruno-like 4, RNA bindi 99.5 1.1E-14 3.9E-19 117.6 6.9 82 243-330 12-97 (106)
241 2dnm_A SRP46 splicing factor; 99.5 3.4E-15 1.2E-19 120.1 3.7 81 243-329 12-93 (103)
242 2la6_A RNA-binding protein FUS 99.5 2.6E-15 8.8E-20 119.8 2.9 77 244-326 13-98 (99)
243 2ywk_A Putative RNA-binding pr 99.5 5.7E-15 1.9E-19 116.9 4.9 79 242-327 14-93 (95)
244 3d2w_A TAR DNA-binding protein 99.5 3.8E-14 1.3E-18 110.2 9.4 74 362-444 9-84 (89)
245 4a8x_A RNA-binding protein wit 99.5 6.3E-15 2.1E-19 114.8 4.9 79 243-327 3-83 (88)
246 2cqp_A RNA-binding protein 12; 99.5 7.5E-15 2.6E-19 116.9 5.4 78 244-327 15-93 (98)
247 1p27_B RNA-binding protein 8A; 99.5 3.3E-15 1.1E-19 120.9 3.3 80 243-328 22-102 (106)
248 1iqt_A AUF1, heterogeneous nuc 99.5 5.7E-15 1.9E-19 111.2 4.3 74 246-325 1-74 (75)
249 2cpe_A RNA-binding protein EWS 99.5 7E-15 2.4E-19 120.4 5.2 89 242-330 13-104 (113)
250 2e5h_A Zinc finger CCHC-type a 99.5 4.3E-15 1.5E-19 117.3 3.7 78 243-326 15-93 (94)
251 1x4g_A Nucleolysin TIAR; struc 99.5 1.1E-13 3.9E-18 112.3 12.3 80 239-330 20-100 (109)
252 2cph_A RNA binding motif prote 99.5 8.5E-15 2.9E-19 118.7 5.5 82 243-330 14-98 (107)
253 2cq0_A Eukaryotic translation 99.5 3.3E-15 1.1E-19 120.1 3.0 81 243-329 14-95 (103)
254 2cq4_A RNA binding motif prote 99.5 3.5E-15 1.2E-19 122.4 3.2 81 241-327 22-102 (114)
255 2do4_A Squamous cell carcinoma 99.5 7.8E-15 2.7E-19 117.2 5.1 80 243-329 16-96 (100)
256 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.9E-14 1.3E-18 113.8 9.2 79 243-329 14-93 (103)
257 2d9p_A Polyadenylate-binding p 99.5 6.5E-15 2.2E-19 118.4 4.5 80 243-330 14-94 (103)
258 2dhg_A TRNA selenocysteine ass 99.5 1.2E-14 4.2E-19 117.0 6.1 81 243-330 8-91 (104)
259 2dnl_A Cytoplasmic polyadenyla 99.5 3.3E-14 1.1E-18 116.4 8.6 76 363-441 7-85 (114)
260 1wex_A Hypothetical protein (r 99.5 2.7E-14 9.3E-19 114.0 7.9 76 243-330 14-92 (104)
261 2a3j_A U1 small nuclear ribonu 99.5 1.6E-14 5.5E-19 119.7 6.7 78 244-330 29-111 (127)
262 1x4a_A Splicing factor, argini 99.5 2.3E-14 7.9E-19 116.4 7.5 78 243-329 21-99 (109)
263 2kxn_B Transformer-2 protein h 99.5 5.9E-15 2E-19 123.4 4.0 81 243-329 45-126 (129)
264 1x4b_A Heterogeneous nuclear r 99.5 1E-14 3.5E-19 120.0 5.4 84 241-330 24-107 (116)
265 2cq1_A PTB-like protein L; RRM 99.5 3.4E-14 1.2E-18 112.7 8.1 76 243-330 14-92 (101)
266 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2E-15 6.8E-20 120.6 1.0 81 241-328 16-97 (100)
267 1p1t_A Cleavage stimulation fa 99.5 6.7E-15 2.3E-19 118.6 4.0 83 242-330 6-89 (104)
268 1x4d_A Matrin 3; structural ge 99.5 9.4E-15 3.2E-19 115.7 4.7 75 243-329 14-92 (102)
269 1oo0_B CG8781-PA, drosophila Y 99.5 6.7E-15 2.3E-19 119.9 3.9 80 243-328 25-105 (110)
270 2bz2_A Negative elongation fac 99.5 5E-14 1.7E-18 116.2 9.1 76 362-445 37-112 (121)
271 2dnh_A Bruno-like 5, RNA bindi 99.5 7.5E-15 2.6E-19 118.5 4.0 81 243-330 14-98 (105)
272 2ad9_A Polypyrimidine tract-bi 99.5 2.3E-14 7.9E-19 116.5 6.8 76 243-330 30-108 (119)
273 2m2b_A RNA-binding protein 10; 99.5 7.9E-15 2.7E-19 123.4 4.2 82 242-330 21-109 (131)
274 2cqd_A RNA-binding region cont 99.5 2.3E-14 7.9E-19 117.9 6.9 81 242-329 15-96 (116)
275 2err_A Ataxin-2-binding protei 99.5 8.5E-15 2.9E-19 118.8 4.1 80 241-328 26-106 (109)
276 1x4e_A RNA binding motif, sing 99.5 1.5E-15 5.2E-20 117.4 -0.4 79 243-327 4-83 (85)
277 2dis_A Unnamed protein product 99.5 2.9E-14 9.9E-19 115.9 7.2 82 243-330 7-93 (109)
278 3ulh_A THO complex subunit 4; 99.5 9.5E-15 3.3E-19 118.3 4.3 78 243-327 28-106 (107)
279 2dgv_A HnRNP M, heterogeneous 99.5 1.3E-14 4.5E-19 114.0 4.9 79 243-329 7-86 (92)
280 2krb_A Eukaryotic translation 99.5 7.7E-15 2.6E-19 112.2 3.3 72 244-323 1-80 (81)
281 2dgx_A KIAA0430 protein; RRM d 99.5 2.1E-14 7.1E-19 113.6 5.9 77 243-328 8-89 (96)
282 1wel_A RNA-binding protein 12; 99.5 6.5E-15 2.2E-19 122.7 3.1 79 243-327 24-102 (124)
283 2nlw_A Eukaryotic translation 99.5 1.2E-14 4.3E-19 117.0 4.6 79 243-329 14-100 (105)
284 2dng_A Eukaryotic translation 99.5 1.4E-14 4.7E-19 116.4 4.8 81 243-330 14-94 (103)
285 3ue2_A Poly(U)-binding-splicin 99.5 6E-14 2.1E-18 114.4 8.6 79 363-441 19-106 (118)
286 2xnq_A Nuclear polyadenylated 99.5 6.7E-14 2.3E-18 110.8 8.6 74 241-328 19-94 (97)
287 1wi8_A EIF-4B, eukaryotic tran 99.5 1.2E-14 4.1E-19 117.1 4.2 80 244-330 15-95 (104)
288 2do0_A HnRNP M, heterogeneous 99.5 3.1E-14 1.1E-18 116.8 6.7 80 243-329 14-94 (114)
289 2ki2_A SS-DNA binding protein 99.5 4.5E-15 1.5E-19 116.1 1.2 78 245-329 2-80 (90)
290 2fc9_A NCL protein; structure 99.5 2.2E-14 7.5E-19 114.8 5.2 77 243-329 14-91 (101)
291 3ex7_B RNA-binding protein 8A; 99.5 1.1E-14 3.6E-19 121.9 3.4 81 243-329 21-102 (126)
292 2cpy_A RNA-binding protein 12; 99.5 9.4E-15 3.2E-19 119.7 3.0 80 243-329 14-94 (114)
293 2dh8_A DAZ-associated protein 99.5 1.3E-14 4.4E-19 117.1 3.8 82 243-330 15-96 (105)
294 2jvo_A Nucleolar protein 3; nu 99.5 6.3E-14 2.2E-18 113.3 7.8 76 240-329 27-103 (108)
295 2cq3_A RNA-binding protein 9; 99.5 3.3E-14 1.1E-18 114.3 6.1 80 243-330 14-94 (103)
296 2dit_A HIV TAT specific factor 99.5 2.8E-13 9.5E-18 110.4 11.6 82 360-445 11-103 (112)
297 1why_A Hypothetical protein ri 99.5 9E-14 3.1E-18 110.3 8.5 74 244-329 17-93 (97)
298 2ytc_A PRE-mRNA-splicing facto 99.5 5.1E-14 1.7E-18 108.8 6.8 72 243-326 11-84 (85)
299 1x4f_A Matrin 3; structural ge 99.5 2.8E-14 9.7E-19 114.6 5.5 77 242-330 23-103 (112)
300 1whx_A Hypothetical protein ri 99.5 4.4E-14 1.5E-18 114.9 6.7 75 242-328 8-83 (111)
301 2db1_A Heterogeneous nuclear r 99.5 1.2E-14 4.1E-19 119.7 3.3 79 242-327 15-96 (118)
302 1uaw_A Mouse-musashi-1; RNP-ty 99.5 7.2E-15 2.5E-19 111.2 1.8 75 245-326 1-76 (77)
303 2dnq_A RNA-binding protein 4B; 99.5 1.7E-13 5.7E-18 107.1 9.1 74 243-330 7-81 (90)
304 2cqg_A TDP-43, TAR DNA-binding 99.5 5.2E-14 1.8E-18 113.1 6.4 82 242-330 13-94 (103)
305 2lea_A Serine/arginine-rich sp 99.5 1.9E-14 6.5E-19 121.4 3.9 82 242-329 45-127 (135)
306 1wg5_A Heterogeneous nuclear r 99.5 2.4E-14 8.2E-19 115.1 4.2 79 243-328 14-93 (104)
307 3u1l_A PRE-mRNA-splicing facto 99.5 9.4E-14 3.2E-18 127.2 8.6 76 363-444 133-229 (240)
308 2cpj_A Non-POU domain-containi 99.5 4.7E-14 1.6E-18 112.4 5.8 75 243-329 14-89 (99)
309 2dgw_A Probable RNA-binding pr 99.5 3.3E-14 1.1E-18 111.4 4.8 78 243-328 9-86 (91)
310 2kn4_A Immunoglobulin G-bindin 99.5 5.8E-14 2E-18 122.4 6.7 81 243-329 69-150 (158)
311 1fjc_A Nucleolin RBD2, protein 99.5 3.6E-14 1.2E-18 112.4 4.7 77 242-329 14-91 (96)
312 2dnn_A RNA-binding protein 12; 99.5 2.4E-14 8.4E-19 115.3 3.7 76 244-327 16-91 (109)
313 2kt5_A RNA and export factor-b 99.5 6.3E-14 2.1E-18 116.7 6.3 80 242-328 33-113 (124)
314 2dnp_A RNA-binding protein 14; 99.5 3.1E-13 1E-17 105.5 9.9 73 243-329 8-81 (90)
315 2dha_A FLJ20171 protein; RRM d 99.5 3.3E-14 1.1E-18 117.0 4.5 80 241-327 20-103 (123)
316 1wf0_A TDP-43, TAR DNA-binding 99.5 7.4E-14 2.5E-18 108.6 6.3 77 363-446 4-80 (88)
317 1wez_A HnRNP H', FTP-3, hetero 99.5 9.5E-15 3.2E-19 116.7 1.1 77 243-327 14-90 (102)
318 2hgl_A HNRPF protein, heteroge 99.5 2.1E-14 7.1E-19 120.5 3.2 78 243-327 43-123 (136)
319 1h2v_Z 20 kDa nuclear CAP bind 99.5 3.2E-14 1.1E-18 123.7 4.5 83 242-330 37-120 (156)
320 2dgu_A Heterogeneous nuclear r 99.4 5.6E-13 1.9E-17 106.9 11.2 74 243-330 10-84 (103)
321 2voo_A Lupus LA protein; RNA-b 99.4 2.5E-13 8.7E-18 121.9 10.0 78 365-444 110-187 (193)
322 3egn_A RNA-binding protein 40; 99.4 6.5E-14 2.2E-18 119.8 5.8 87 243-330 44-131 (143)
323 2cqh_A IGF-II mRNA-binding pro 99.4 1.1E-13 3.7E-18 108.9 6.6 75 243-329 7-83 (93)
324 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 4.9E-14 1.7E-18 120.3 4.9 78 243-326 62-140 (140)
325 1jmt_A Splicing factor U2AF 35 99.4 7.3E-14 2.5E-18 111.7 5.5 72 369-441 20-103 (104)
326 1nu4_A U1A RNA binding domain; 99.4 4.4E-14 1.5E-18 112.2 4.2 80 242-330 6-90 (97)
327 1x4c_A Splicing factor, argini 99.4 3.7E-13 1.3E-17 109.0 9.7 75 243-330 14-94 (108)
328 2cpi_A CCR4-NOT transcription 99.4 2.5E-14 8.6E-19 116.5 2.6 82 243-330 14-102 (111)
329 2diu_A KIAA0430 protein; struc 99.4 3.2E-13 1.1E-17 102.5 8.2 72 244-331 8-86 (96)
330 2lmi_A GRSF-1, G-rich sequence 99.4 2.2E-14 7.4E-19 116.0 2.0 78 243-327 10-90 (107)
331 2cpd_A Apobec-1 stimulating pr 99.4 5.3E-13 1.8E-17 106.2 9.9 73 243-329 14-89 (99)
332 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.3E-14 1.5E-18 124.0 3.8 81 243-329 71-152 (165)
333 2fc8_A NCL protein; structure 99.4 4.3E-14 1.5E-18 113.4 3.4 79 243-330 14-93 (102)
334 2f3j_A RNA and export factor b 99.4 3.1E-13 1.1E-17 119.4 9.2 79 243-328 87-166 (177)
335 2lcw_A RNA-binding protein FUS 99.1 1.2E-14 4.1E-19 119.6 0.0 82 242-329 5-95 (116)
336 2cq2_A Hypothetical protein LO 99.4 3.4E-13 1.1E-17 108.3 8.2 74 243-328 24-105 (114)
337 2dgt_A RNA-binding protein 30; 99.4 4.7E-13 1.6E-17 104.9 8.9 74 243-330 9-83 (92)
338 3q2s_C Cleavage and polyadenyl 99.4 4.6E-14 1.6E-18 130.3 3.1 80 243-328 67-149 (229)
339 1x5o_A RNA binding motif, sing 99.4 9E-14 3.1E-18 113.9 4.1 79 242-327 23-110 (114)
340 1x5p_A Negative elongation fac 99.4 9.8E-13 3.3E-17 104.2 9.5 73 243-329 14-87 (97)
341 1wg1_A KIAA1579 protein, homol 99.4 1.5E-13 5E-18 106.8 4.5 73 243-328 4-77 (88)
342 2e5g_A U6 snRNA-specific termi 99.4 7.2E-13 2.5E-17 104.3 8.5 75 243-329 7-82 (94)
343 2hgn_A Heterogeneous nuclear r 99.4 3.1E-14 1.1E-18 119.8 0.6 80 241-328 43-122 (139)
344 1sjr_A Polypyrimidine tract-bi 99.4 7.5E-13 2.6E-17 113.1 9.1 76 244-329 46-124 (164)
345 2kvi_A Nuclear polyadenylated 99.4 2.1E-13 7.1E-18 107.9 5.3 74 241-328 7-82 (96)
346 3s6e_A RNA-binding protein 39; 99.4 1.6E-12 5.4E-17 105.2 9.9 75 363-441 6-90 (114)
347 2hgm_A HNRPF protein, heteroge 99.4 5.8E-14 2E-18 115.7 1.4 77 242-326 40-118 (126)
348 1wf1_A RNA-binding protein RAL 99.4 5.4E-13 1.9E-17 108.4 7.0 72 243-328 26-99 (110)
349 2e44_A Insulin-like growth fac 99.4 7.8E-13 2.7E-17 104.6 7.7 78 243-329 14-92 (96)
350 3pgw_S U1-70K; protein-RNA com 99.4 3.6E-13 1.2E-17 136.3 7.0 82 243-330 101-183 (437)
351 2xs2_A Deleted in azoospermia- 99.4 7.8E-14 2.7E-18 111.8 0.8 77 243-327 8-84 (102)
352 2i2y_A Fusion protein consists 99.4 1.7E-12 5.8E-17 111.9 9.0 74 243-328 72-147 (150)
353 3zzy_A Polypyrimidine tract-bi 99.3 1.4E-12 4.7E-17 107.3 6.7 75 244-329 28-106 (130)
354 3beg_B Splicing factor, argini 99.3 1.2E-12 4.1E-17 107.1 6.1 71 243-326 15-91 (115)
355 2dnl_A Cytoplasmic polyadenyla 99.3 7.8E-13 2.7E-17 108.1 4.8 74 243-325 7-84 (114)
356 2e5i_A Heterogeneous nuclear r 99.3 3E-12 1E-16 104.9 8.2 72 246-329 27-102 (124)
357 2j8a_A Histone-lysine N-methyl 99.3 3.7E-13 1.3E-17 108.1 2.5 75 245-325 3-92 (136)
358 3d2w_A TAR DNA-binding protein 99.3 7E-13 2.4E-17 102.9 4.0 75 242-328 9-83 (89)
359 2bz2_A Negative elongation fac 99.3 2.1E-12 7.1E-17 106.5 6.1 74 242-329 37-111 (121)
360 2voo_A Lupus LA protein; RNA-b 99.3 1.3E-12 4.4E-17 117.3 4.6 84 240-330 105-188 (193)
361 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.6E-11 5.5E-16 96.7 10.2 75 365-446 11-92 (100)
362 1wf0_A TDP-43, TAR DNA-binding 99.3 1.5E-12 5E-17 101.1 4.1 75 243-329 4-78 (88)
363 3tht_A Alkylated DNA repair pr 99.3 9.8E-12 3.4E-16 120.2 9.9 76 361-442 15-97 (345)
364 3u1l_A PRE-mRNA-splicing facto 99.2 5.4E-12 1.8E-16 115.5 6.1 77 242-330 132-230 (240)
365 3v4m_A Splicing factor U2AF 65 99.2 4.2E-12 1.4E-16 101.5 4.3 64 474-537 2-76 (105)
366 3s6e_A RNA-binding protein 39; 99.2 4.3E-12 1.5E-16 102.6 3.4 65 473-537 3-72 (114)
367 2pe8_A Splicing factor 45; RRM 99.2 1.6E-11 5.3E-16 98.1 4.9 79 243-327 7-92 (105)
368 2dit_A HIV TAT specific factor 99.1 2E-10 7E-15 93.3 7.6 76 243-328 14-101 (112)
369 1owx_A Lupus LA protein, SS-B, 99.1 4.6E-10 1.6E-14 90.6 8.3 76 360-441 14-93 (121)
370 2dnr_A Synaptojanin-1; RRM dom 99.0 9.8E-10 3.3E-14 82.6 8.9 73 365-446 8-88 (91)
371 1jmt_A Splicing factor U2AF 35 99.0 2.3E-11 7.9E-16 97.1 -0.8 71 249-326 20-103 (104)
372 3tht_A Alkylated DNA repair pr 99.0 8.3E-10 2.8E-14 106.7 7.6 73 242-326 16-96 (345)
373 3dxb_A Thioredoxin N-terminall 99.0 1.9E-09 6.5E-14 99.3 9.6 66 376-441 141-210 (222)
374 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.1E-09 7.2E-14 84.5 7.9 73 245-330 11-91 (100)
375 3ue2_A Poly(U)-binding-splicin 98.9 5.3E-10 1.8E-14 91.0 4.1 79 242-326 18-106 (118)
376 1ufw_A Synaptojanin 2; RNP dom 98.8 1E-08 3.5E-13 77.4 8.2 68 365-441 16-92 (95)
377 2l9w_A U4/U6 snRNA-associated- 98.7 1.1E-07 3.9E-12 72.9 9.5 72 364-441 21-97 (117)
378 1owx_A Lupus LA protein, SS-B, 98.5 1.6E-07 5.6E-12 75.6 6.0 70 244-325 18-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.4 4.4E-07 1.5E-11 68.2 6.1 69 245-327 8-84 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.3 9.4E-07 3.2E-11 66.7 6.0 69 244-326 15-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.2 4.8E-06 1.7E-10 64.0 8.7 75 243-324 20-95 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.1 1.2E-05 4.2E-10 61.4 8.1 73 244-325 8-80 (104)
383 1wey_A Calcipressin 1; structu 98.1 1.3E-05 4.4E-10 61.6 7.9 74 363-442 4-82 (104)
384 3dxb_A Thioredoxin N-terminall 98.0 2.6E-06 9E-11 78.1 3.2 65 256-326 141-210 (222)
385 1uw4_A UPF3X; nonsense mediate 97.5 0.00028 9.4E-09 53.4 7.2 67 365-431 2-70 (91)
386 1wwh_A Nucleoporin 35, nucleop 97.4 0.00066 2.3E-08 53.8 8.8 70 365-442 25-95 (119)
387 1whv_A Poly(A)-specific ribonu 97.4 0.00072 2.5E-08 50.9 8.4 56 363-427 15-70 (100)
388 2dhx_A Poly (ADP-ribose) polym 97.2 0.0041 1.4E-07 47.5 10.2 68 365-441 9-81 (104)
389 1wey_A Calcipressin 1; structu 96.9 0.0024 8.2E-08 49.1 7.0 72 244-327 5-82 (104)
390 3ctr_A Poly(A)-specific ribonu 96.8 0.0017 5.7E-08 49.2 5.1 53 366-427 8-60 (101)
391 3p3d_A Nucleoporin 53; structu 96.8 0.0026 8.8E-08 51.1 6.3 74 366-441 9-96 (132)
392 2l08_A Regulator of nonsense t 96.7 0.0021 7.1E-08 48.8 5.0 77 365-441 10-93 (97)
393 1wwh_A Nucleoporin 35, nucleop 96.6 0.0077 2.6E-07 47.7 7.7 72 242-326 22-94 (119)
394 1whv_A Poly(A)-specific ribonu 95.7 0.015 5E-07 43.9 4.8 53 244-311 16-69 (100)
395 1uw4_A UPF3X; nonsense mediate 95.3 0.016 5.5E-07 43.7 4.1 64 245-318 2-72 (91)
396 3ctr_A Poly(A)-specific ribonu 94.6 0.012 4.2E-07 44.4 1.7 53 245-312 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 94.4 0.034 1.2E-06 44.6 4.0 81 245-326 8-96 (132)
398 3pq1_A Poly(A) RNA polymerase; 94.4 0.023 7.9E-07 56.8 3.7 54 365-424 54-107 (464)
399 3pq1_A Poly(A) RNA polymerase; 93.5 0.026 8.9E-07 56.4 2.1 65 239-316 48-113 (464)
400 2l08_A Regulator of nonsense t 92.5 0.053 1.8E-06 41.1 2.0 70 244-318 9-80 (97)
401 3d45_A Poly(A)-specific ribonu 84.6 2.2 7.5E-05 43.5 7.9 55 364-427 440-494 (507)
402 4eyt_A Telomerase associated p 59.4 48 0.0016 24.1 8.3 68 364-439 12-86 (129)
403 3d45_A Poly(A)-specific ribonu 49.6 21 0.00073 36.2 5.8 54 244-312 440-494 (507)
404 2g0c_A ATP-dependent RNA helic 37.5 96 0.0033 21.6 6.3 57 376-441 13-74 (76)
405 3fry_A Probable copper-exporti 35.3 1E+02 0.0035 20.9 7.0 56 366-429 8-63 (73)
406 4e8u_A Putative uncharacterize 31.9 82 0.0028 26.4 5.6 49 366-417 14-73 (172)
407 1yo3_A Dynein light chain 1; s 28.9 83 0.0028 23.8 4.8 39 498-541 49-90 (102)
408 3h7h_B Transcription elongatio 22.1 77 0.0026 24.2 3.5 34 391-429 41-74 (106)
409 3zzp_A TS9, ribosomal protein 21.7 1.4E+02 0.0049 21.1 4.6 60 293-389 6-69 (77)
410 4a4j_A Pacszia, cation-transpo 20.8 1.9E+02 0.0063 19.0 5.2 54 366-425 5-61 (69)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.4e-35 Score=284.72 Aligned_cols=218 Identities=23% Similarity=0.325 Sum_probs=188.4
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
......++|||+|||+.+|+++|+++|+.|| | +.+.++.++|||||+|.+.++|.+|+ .|++..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i------------~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 83 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-L------------KYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR 83 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-E------------EEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-C------------EEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 3455778999999999999999999999997 4 44455889999999999999999999 89999999
Q ss_pred CceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEc
Q 009076 318 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 397 (544)
Q Consensus 318 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~ 397 (544)
|+.|.|.+.. ...+|||+|||..+++++|+++|+.||.|..+.++
T Consensus 84 g~~i~v~~~~-----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~ 128 (284)
T 3smz_A 84 ERELSVQLQP-----------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLV 128 (284)
T ss_dssp TEECEEEECC-----------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CeEEEEEecC-----------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEE
Confidence 9999998632 12489999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCc
Q 009076 398 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPS 477 (544)
Q Consensus 398 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (544)
.+..+|.++|+|||+|.+.++|.+|+..|+|..|+|+.|.|.|+...... ....+.
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~------------------------~~~~~~ 184 (284)
T 3smz_A 129 YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT------------------------PALLHS 184 (284)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC------------------------TTTTSC
T ss_pred eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC------------------------cccCCc
Confidence 99889999999999999999999999999999999999999999544221 123467
Q ss_pred ceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee--------ccCceEEEEecCCCCCCCce
Q 009076 478 KVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 478 ~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i--------~~~g~a~V~f~~~~~A~a~~ 537 (544)
.++++.|+ +.++++. ++|+++|++||.|..+ ...|+|||+|.+.++|.+|+
T Consensus 185 ~~l~v~nl--p~~~~~~-------~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 185 RCLCVDRL--PPGFNDV-------DALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp SEEEEECC--CTTCCCH-------HHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHH
T ss_pred cEEEEecC--CcccCCH-------HHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHH
Confidence 78999998 4444333 3899999999999888 24799999999999996654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.5e-34 Score=278.03 Aligned_cols=224 Identities=17% Similarity=0.250 Sum_probs=175.2
Q ss_pred hhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 240 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
.....++|||+|||+.+|+++|+++|+.||.|..+. +.. ....++|||||+|.+.++|.+|+.+++..|.|+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~-~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 108 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVD-------VAD-SLKKNFRFARIEFARYDGALAAITKTHKVVGQN 108 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEE-------EEE-CTTSSSEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEE-CCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCc
Confidence 455688999999999999999999999999865542 111 112358999999999999999999999999999
Q ss_pred eeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcC-CceEEEEcc
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFG-PLRGFDLVK 398 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G-~i~~v~i~~ 398 (544)
.|.|.++. .++|||+|||..+++++|+++|+.|| .|..|.|+.
T Consensus 109 ~i~v~~~~------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 109 EIIVSHLT------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp ECEEEECC------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred EEEEEECC------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 99998631 35899999999999999999999999 999999998
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 009076 399 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSK 478 (544)
Q Consensus 399 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (544)
+.. |.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+....... .....+..
T Consensus 153 ~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------------~~~~~~~~ 211 (292)
T 2ghp_A 153 LRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------------------DSATLEGR 211 (292)
T ss_dssp -------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-----------------------------CCTTT
T ss_pred CCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc--------------------cccCCCCc
Confidence 854 788999999999999999999999999999999999999654321110 12345677
Q ss_pred eeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-----c-----cCceEEEEecCCCCCCCce
Q 009076 479 VVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-----F-----CYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 479 ~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-----~-----~~g~a~V~f~~~~~A~a~~ 537 (544)
++++.|+ +.++++. ++|+++|++||.|..| . ..|+|||+|.+.++|.+|+
T Consensus 212 ~l~v~nl--p~~~~t~-------~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 212 EIMIRNL--STELLDE-------NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp EEEEEEE--CTTTCCH-------HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred eEEEECC--CcccCCH-------HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 8888888 4441222 3899999999999998 1 2689999999999996665
No 3
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.3e-31 Score=243.47 Aligned_cols=193 Identities=49% Similarity=0.838 Sum_probs=160.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|+.||.|.++.. .++..|.++.++.++|||||+|.+.++|.+||.|++..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~-~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCS-SSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhccccc-CCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 4789999999999999999999999999987642 234468899999999999999999999999999999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.++.................+ ...........++|||+|||..+++++|+++|++||.|..|.++.++.+
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVP---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCT---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred EeCCCCCCCCCCCcCCCcCCCC---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 9988765433221111100000 0011122345679999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.+..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999996653
No 4
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.2e-31 Score=237.87 Aligned_cols=169 Identities=53% Similarity=0.958 Sum_probs=152.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
+.++|||+|||+.+|+++|+++|++||.+.++. ..++..|.++.++.++|||||+|.+.++|.+|+.+++..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~-~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLT-QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCC-SSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccc-cCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 578999999999999999999999999887753 1233468889999999999999999999999999999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.++...... ....+|||+|||..+++++|+++|++||.|..+.++.++.+
T Consensus 82 v~~~~~~~~~-----------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 132 (172)
T 2g4b_A 82 IRRPHDYQPL-----------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 132 (172)
T ss_dssp EECCSSCCCC-----------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT
T ss_pred ecCCcccCCC-----------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC
Confidence 9886543211 12458999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 133 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999999999999999999997
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.4e-31 Score=247.33 Aligned_cols=165 Identities=21% Similarity=0.367 Sum_probs=143.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
+.++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|| .+++..+.|+.|
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR------VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE------EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 467899999999999999999999999887664 3444456788999999999999999999 999999999999
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 401 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~ 401 (544)
.+.++........ ....+|||+|||+.+++++|+++|+.||.|..|.|+.+.
T Consensus 88 ~~~~~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~- 139 (213)
T 4f02_A 88 RIMWSQRDPSLRK---------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE- 139 (213)
T ss_dssp EEEECCCCTHHHH---------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-
T ss_pred ccccccccccccc---------------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-
Confidence 9987653322111 122489999999999999999999999999999999884
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 402 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 140 -~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 140 -NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp -TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred -CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 4579999999999999999999999999999999999994
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-31 Score=234.66 Aligned_cols=164 Identities=22% Similarity=0.349 Sum_probs=144.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
++|||+|||+.+|+++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~-------i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIK-------IMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEE-------EECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEE-------EEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE
Confidence 5899999999999999999999999876553 222234668899999999999999999 99999999999999
Q ss_pred cCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCC
Q 009076 324 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 403 (544)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g 403 (544)
.++..... .......+|||+|||..+++++|+++|+.||.|..+.++.++.+|
T Consensus 74 ~~~~~~~~---------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 126 (166)
T 3md3_A 74 NWAFQSQQ---------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG 126 (166)
T ss_dssp EECCCCCC---------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC
T ss_pred EEcCCCCC---------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 87643321 111234589999999999999999999999999999999998899
Q ss_pred CcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 404 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 404 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 127 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 127 SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999999999999999984
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=8.6e-31 Score=233.00 Aligned_cols=163 Identities=21% Similarity=0.336 Sum_probs=144.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|..|+ .|++..+.|+.|.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCR------IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 76 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEE
Confidence 67899999999999999999999999876654 2333346678899999999999999999 7999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.++..... .....+|+|+|||..+++++|+++|++||.|..+.++.+..+
T Consensus 77 v~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 127 (168)
T 1b7f_A 77 VSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 127 (168)
T ss_dssp EEECCCCSS-----------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT
T ss_pred EEecCCCcc-----------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC
Confidence 988653221 123358999999999999999999999999999999999888
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEc
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRA 441 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~ 441 (544)
|.++|+|||+|.+.++|.+|+..|||..|.| ++|.|.||
T Consensus 128 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 128 GRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999999999987 99999986
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.6e-31 Score=246.70 Aligned_cols=186 Identities=25% Similarity=0.376 Sum_probs=153.0
Q ss_pred cHHhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009076 237 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 315 (544)
Q Consensus 237 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~ 315 (544)
........++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..
T Consensus 21 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 94 (216)
T 2qfj_A 21 RQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSID------MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM 94 (216)
T ss_dssp HHHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC
T ss_pred cCcccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe
Confidence 345566789999999999999999999999999876654 2334446778999999999999999999 799999
Q ss_pred eCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEE
Q 009076 316 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFD 395 (544)
Q Consensus 316 l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~ 395 (544)
|.|+.|.|.++........... . ........++|||+|||..+++++|+++|+.||.|..|.
T Consensus 95 ~~g~~l~v~~~~~~~~~~~~~~----------~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 156 (216)
T 2qfj_A 95 LGGRNIKVGRPSNIGQAQPIID----------Q--------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSAT 156 (216)
T ss_dssp CC-CCCEEECCSCCGGGHHHHH----------H--------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEE
T ss_pred eCCeeEEEecCCCccccchhhh----------h--------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEE
Confidence 9999999988664432110000 0 000012335899999999999999999999999999999
Q ss_pred EccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 396 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 396 i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
|+.++.+|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.....
T Consensus 157 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 157 LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 999988999999999999999999999999999999999999999976643
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=6.7e-31 Score=239.97 Aligned_cols=176 Identities=23% Similarity=0.392 Sum_probs=145.0
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCce
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 320 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~ 320 (544)
....++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+||.+++..|.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV------VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 34578999999999999999999999999876654 233334577899999999999999999977999999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCC
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 400 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~ 400 (544)
|.|.++........ .......++|||+|||..+++++|+++|+.||.|..|.|+.+.
T Consensus 84 l~v~~~~~~~~~~~-----------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 84 VEPKRAVSREDSQR-----------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CEEEECCC----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred eeeecccCcccccc-----------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 99988654332110 0112234689999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 401 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 401 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
.+|.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.|+.++..
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 8999999999999999999999965 89999999999999966543
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=4.3e-30 Score=230.07 Aligned_cols=164 Identities=20% Similarity=0.388 Sum_probs=145.2
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
...++|||+|||+.+|+++|+++|..||.+.++ .+.+..++.++|||||+|.+.++|.+|++|++..|.|+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 83 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 83 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEE
Confidence 357899999999999999999999999999873 4778889999999999999999999999999999999999
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 401 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~ 401 (544)
.|.++...... ......+|||+|||..+++++|+++|+.||.|..+ ..
T Consensus 84 ~v~~~~~~~~~---------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~ 131 (175)
T 1fje_B 84 KLEKPKGRDSK---------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ 131 (175)
T ss_dssp EEECCCCSSCS---------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CS
T ss_pred EEecCCCcccc---------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cC
Confidence 99987643211 01123589999999999999999999999988766 35
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 402 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 402 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
+|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 7889999999999999999999999999999999999999654
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.4e-30 Score=231.33 Aligned_cols=163 Identities=22% Similarity=0.358 Sum_probs=142.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|..|+ .|++..+.|+.|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence 57899999999999999999999999876553 2223336677899999999999999999 7999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.++...... ....+|+|+|||..+++++|+++|++||.|..+.++.+..+
T Consensus 76 v~~~~~~~~~-----------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 126 (167)
T 1fxl_A 76 VSYARPSSAS-----------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT 126 (167)
T ss_dssp EEECCCCCGG-----------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred EEecCCCccc-----------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC
Confidence 9876532211 12358999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeE--EEEEEc
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT--LTVRRA 441 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~--i~v~~~ 441 (544)
|.++|+|||+|.+.++|.+|+..|||..|.|+. |.|.||
T Consensus 127 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 127 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999999999999964 888886
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=8e-31 Score=232.96 Aligned_cols=165 Identities=19% Similarity=0.426 Sum_probs=142.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+. ++..|.|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLK------IMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEE------CCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcc
Confidence 478999999999999999999999999876654 23333467889999999999999999995 36789999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 402 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~ 402 (544)
|.++...... ....+|||+|||..+++++|+++|++||.|..+.++.++.+
T Consensus 75 v~~~~~~~~~-----------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~ 125 (167)
T 2cjk_A 75 PKRAIPRDEQ-----------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT 125 (167)
T ss_dssp CEECCCHHHH-----------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS
T ss_pred cccccchhhc-----------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC
Confidence 8765432110 11248999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 403 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 403 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
|.++|+|||+|.+.++|.+|+. |+|..|+|+.|.|.|+.++
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999996 8999999999999999654
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.3e-29 Score=225.35 Aligned_cols=165 Identities=22% Similarity=0.352 Sum_probs=138.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeec--CCCcEEEEEecCHHHHHHHH-HcCCceeC--
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN--HEKKFAFVEMRSVEEASNAM-ALDGIIFE-- 317 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~--~~kg~afV~f~~~~~A~~Al-~l~~~~l~-- 317 (544)
..++|||+|||+.+|+++|+++|++||.|..+. ++.+...+ .++|||||+|.+.++|.+|+ .|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEIN------VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 367899999999999999999999999887654 23333333 68899999999999999999 89998776
Q ss_pred -CceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEE
Q 009076 318 -GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 396 (544)
Q Consensus 318 -g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i 396 (544)
++.+.+.++..... ......+|||+|||..+++++|+++|++||.|..|.+
T Consensus 76 ~~~~~~~~~~~~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 76 MHHPIQMKPADSEKN----------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp CSSCCEEEECGGGCC----------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CccceEEcccccccc----------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 56777765432111 0112358999999999999999999999999999999
Q ss_pred ccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC---CeEEEEEEcC
Q 009076 397 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG---DKTLTVRRAN 442 (544)
Q Consensus 397 ~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~---g~~i~v~~~~ 442 (544)
+.+. +|.++|+|||+|.+.++|.+|+..|||..+. |++|.|.|++
T Consensus 128 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9985 6899999999999999999999999998775 4999999983
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.1e-28 Score=223.25 Aligned_cols=185 Identities=14% Similarity=0.108 Sum_probs=137.1
Q ss_pred ccceEEEcCCC-CCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeec-CCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 243 HARRVYVGGLP-PTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN-HEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp-~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
+.++|||+||| ..+|+++|+++|++||.|.. +.+. ..+|||||+|.+.++|..|+ .|||..|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~------------v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK------------VKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEE------------EEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEE------------EEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 36789999999 79999999999999997543 3332 35899999999999999999 8999999999
Q ss_pred eeEEcCCCCCCccccccCCCCCCCCC-cccccc---cCC----CCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCc
Q 009076 320 PVKVRRPSDYNPSLAATLGPSQPNPN-LNLAAV---GLT----PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 391 (544)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~----~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i 391 (544)
+|.|.++.................+. ...... ... ........+..+|||+|||+.+++++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999876433211000000000000 000000 000 0001122455789999999999999999999999999
Q ss_pred --eEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCe----EEEEEEc
Q 009076 392 --RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK----TLTVRRA 441 (544)
Q Consensus 392 --~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~----~i~v~~~ 441 (544)
..+.++.+. |..+|+|||+|.+.++|.+||..|||..|.|. ++.|.||
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 899998874 55679999999999999999999999999886 5777665
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1e-27 Score=223.90 Aligned_cols=185 Identities=19% Similarity=0.233 Sum_probs=140.1
Q ss_pred hccceEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCC-CcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 242 RHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE-KKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 242 ~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
...++|||+|||+ .+++++|+++|+.||.|. .+.+... +|||||+|.+.++|.+|+ .|++..|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~------------~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ------------RVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE------------EEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE------------EEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3578999999999 999999999999999754 3333332 799999999999999999 799999999
Q ss_pred ceeEEcCCCCCCccccccCCCCCCCC------CcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcC-Cc
Q 009076 319 APVKVRRPSDYNPSLAATLGPSQPNP------NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFG-PL 391 (544)
Q Consensus 319 ~~l~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G-~i 391 (544)
+.|.|.++.................. ..................+.++|||+|||..+++++|+++|+.|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 99999987654322111100000000 000000000000112234467899999999999999999999999 99
Q ss_pred eEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC-CeEEEEEEcCC
Q 009076 392 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRANQ 443 (544)
Q Consensus 392 ~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~i~v~~~~~ 443 (544)
..|.|+.. .+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+.+
T Consensus 180 ~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred eEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999664 2789999999999999999999999999 99999999954
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.6e-27 Score=230.56 Aligned_cols=186 Identities=22% Similarity=0.339 Sum_probs=141.4
Q ss_pred hccceEEEcCCCCCCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 316 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l 316 (544)
...++|||+|||+.+|+++|+ ++|+.||.|..+. ...++.++|||||+|.+.++|.+|+ .|||..|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~---------~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIL---------VSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEE---------EcCCCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 457899999999999999966 8999999876532 2237788999999999999999999 9999999
Q ss_pred CCceeEEcCCCCCCccccccCCCC--------------------------------------------------------
Q 009076 317 EGAPVKVRRPSDYNPSLAATLGPS-------------------------------------------------------- 340 (544)
Q Consensus 317 ~g~~l~v~~~~~~~~~~~~~~~~~-------------------------------------------------------- 340 (544)
.|+.|.|.++...........+..
T Consensus 78 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 78 YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 999999988754332100000000
Q ss_pred ------CCCCCcccccccCCC---------------------CCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceE
Q 009076 341 ------QPNPNLNLAAVGLTP---------------------GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG 393 (544)
Q Consensus 341 ------~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~ 393 (544)
...+.. ....+... .......+.++|||+|||..+++++|+++|+.||.|..
T Consensus 158 ~g~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 158 PGQPPYMPPPGM-IPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCC-CCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 000000 00000000 00012234578999999999999999999999999999
Q ss_pred EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC-CeEEEEEEcC
Q 009076 394 FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRAN 442 (544)
Q Consensus 394 v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~i~v~~~~ 442 (544)
|.|+.+. +|+|||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 237 v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 237 VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999763 589999999999999999999999999 9999999984
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=8.6e-28 Score=233.62 Aligned_cols=172 Identities=17% Similarity=0.364 Sum_probs=140.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++|||+|||+.+|+++|.++|..|| .|..+. +.....+.++|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~-------i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIR-------LPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE-------CC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEE-------EEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 478999999999999999999999999 877654 222233678999999999999999999 79999999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCC-CcHHHHHHHHHhcCCceEEEEccC
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKD 399 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~ee~l~~~f~~~G~i~~v~i~~~ 399 (544)
|.|.++......... ........+|||+|||.. +++++|+++|+.||.|..|.|+.+
T Consensus 189 l~v~~a~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT----------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp CEEEECCCC-------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred EEEEECCCCcccccc----------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec
Confidence 999886543221100 011234468999999999 999999999999999999999998
Q ss_pred CC-CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 400 RE-TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 400 ~~-~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
.. +|.++|+|||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 247 ~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 247 QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 65 5999999999999999999999 99999999999999999654
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.5e-27 Score=218.06 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=139.2
Q ss_pred cceEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 244 ARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 244 ~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
.++|||+|||+ .+++++|+++|+.||.|..+. +.. .+|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~------------i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVK------------ILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEE------------CSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE------------EEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 57899999999 999999999999999764432 222 2799999999999999999 79999999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCC------CcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcC-CceE
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNP------NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFG-PLRG 393 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G-~i~~ 393 (544)
|.|.++.................. ..................+.++|||+|||..+++++|+++|+.|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 999987654321111000000000 000000000011112234567899999999999999999999999 9999
Q ss_pred EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC-CeEEEEEEcCC
Q 009076 394 FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRANQ 443 (544)
Q Consensus 394 v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~i~v~~~~~ 443 (544)
|.|+.+. +|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+.+
T Consensus 151 v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 151 FKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 9997652 789999999999999999999999999 99999999854
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.6e-27 Score=230.75 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=146.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|.++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCF------LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEE------EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 357899999999999999999999999876543 2333346778999999999999999999 999999999999
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCC-cHHHHHHHHHhcCCceEEEEccCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYF-TEAQIRELLESFGPLRGFDLVKDR 400 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~ee~l~~~f~~~G~i~~v~i~~~~ 400 (544)
.|.++...... .......+|||+|||..+ ++++|+++|+.||.|..+.|+.+.
T Consensus 168 ~v~~a~~~~~~--------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 168 YVHWTDAGQLT--------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp EEEECCGGGCC--------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred EEEECCCCCCC--------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 99886532110 011234689999999995 999999999999999999999985
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 401 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 401 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
+|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++.
T Consensus 222 -~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 222 -DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp -SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred -CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 89999999999999999999999999999999999999996553
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.3e-27 Score=226.12 Aligned_cols=156 Identities=22% Similarity=0.384 Sum_probs=139.9
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|+++|+.||. |..+.+..++|||||+|.+.++|..|+ .++|..|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGE------------PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 34678999999999999999999999996 445556788999999999999999999 79999999999
Q ss_pred eEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCC
Q 009076 321 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 400 (544)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~ 400 (544)
|.|.++.. ..+|||+|||..+++++|+++|+.||.|..|.|+.+
T Consensus 88 l~v~~a~~-----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~- 131 (261)
T 3sde_A 88 LRIRFATH-----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD- 131 (261)
T ss_dssp CEEEECCC-----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-
T ss_pred eEeeeccc-----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-
Confidence 99987531 248999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHhC-CCeeC---CeEEEEEEcCCCC
Q 009076 401 ETGNSKGYAFCVYQDLSVTDIACAALN-GIKMG---DKTLTVRRANQGA 445 (544)
Q Consensus 401 ~~g~~~g~afV~f~~~e~A~~A~~~l~-g~~~~---g~~i~v~~~~~~~ 445 (544)
.+|.++|+|||+|.+.++|.+|+..|| |..+. |++|.|.++....
T Consensus 132 ~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 132 DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 589999999999999999999999994 55555 9999999986553
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.89 E-value=3.1e-23 Score=191.18 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=118.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.++|||+|||+.+++++|+++|++||.|.+|.|++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee----
Q 009076 442 NQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---- 517 (544)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i---- 517 (544)
..... .. ......|++.|+ +.++++ ++|+++|++||.|+.+
T Consensus 93 ~~~~~-----~~--------------------~~~~~~l~v~nl--~~~~t~--------~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 93 QRDPS-----LR--------------------KSGVGNIFIKNL--DKSIDN--------KALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp CCCTH-----HH--------------------HHCTTEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEEEE
T ss_pred ccccc-----cc--------------------ccccccceECCc--ccccHH--------HHHHHHHhhcCCeEEEEeec
Confidence 43321 10 012356778887 333333 3899999999999988
Q ss_pred ---ccCceEEEEecCCCCCCCce
Q 009076 518 ---FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ---~~~g~a~V~f~~~~~A~a~~ 537 (544)
..+|+|||+|.+.++|.+|+
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCceEEEEEeCCHHHHHHHH
Confidence 35799999999999997665
No 22
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.89 E-value=6.2e-23 Score=182.01 Aligned_cols=137 Identities=23% Similarity=0.354 Sum_probs=118.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|+|||+|.+.++|.+|+..|+|..+.|+.|.|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999965
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 517 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------ 517 (544)
... ..+..++.+.|+ +.++++ ++|+++|++||.|..+
T Consensus 83 ~~~---------------------------~~~~~~l~v~nl--~~~~t~--------~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 83 GGE---------------------------SIKDTNLYVTNL--PRTITD--------DQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp CSS---------------------------TTTTCEEEEESC--CTTCCH--------HHHHHHHTSSSCEEEEEEEECT
T ss_pred Ccc---------------------------cCCCCCEEEeCC--CCCCCH--------HHHHHhhhcCCcEEEEEEEEcC
Confidence 432 234577888888 333333 4899999999999888
Q ss_pred ---ccCceEEEEecCCCCCCCce
Q 009076 518 ---FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ---~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+++
T Consensus 126 ~~~~~~g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 126 LTGRPRGVAFVRYNKREEAQEAI 148 (168)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHHHH
Confidence 23589999999999996654
No 23
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.88 E-value=9.6e-23 Score=180.59 Aligned_cols=137 Identities=22% Similarity=0.353 Sum_probs=118.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|+|||+|.+.++|.+|+..|||..+.|+.|.|.|+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999954
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee------
Q 009076 444 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 517 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------ 517 (544)
... ..+...+.+.|+ +..+++ ++|+++|++||.|..+
T Consensus 82 ~~~---------------------------~~~~~~l~v~nl--~~~~t~--------~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SSA---------------------------SIRDANLYVSGL--PKTMTQ--------KELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp CCG---------------------------GGTTCEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEEEECT
T ss_pred Ccc---------------------------cCCCCcEEECCC--CCcCCH--------HHHHHHHHhcCCEeEEEEEecC
Confidence 421 123466888888 333332 4899999999999888
Q ss_pred ---ccCceEEEEecCCCCCCCce
Q 009076 518 ---FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ---~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+|+
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCccceEEEEeCCHHHHHHHH
Confidence 23789999999999996654
No 24
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.88 E-value=9.4e-23 Score=185.76 Aligned_cols=143 Identities=17% Similarity=0.303 Sum_probs=116.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeeccc
Confidence 446899999999999999999999999999999999988999999999999999999999955 9999999999999985
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-----
Q 009076 443 QGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----- 517 (544)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i----- 517 (544)
....... .....+..++++.|+ +.++++ ++|+++|++||.|..|
T Consensus 91 ~~~~~~~---------------------~~~~~~~~~l~V~nL--p~~~t~--------~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 91 SREDSQR---------------------PGAHLTVKKIFVGGI--KEDTEE--------HHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp C--------------------------------CCSEEEEECC--TTTCCH--------HHHHHHHTTTSCEEEEEEEEC
T ss_pred Ccccccc---------------------cccCCCcceEEEeCC--CCCCCH--------HHHHHHHhcCCCeEEEEEeec
Confidence 5432110 112345678889888 443333 3899999999999988
Q ss_pred ----ccCceEEEEecCCCCCCCce
Q 009076 518 ----FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ----~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+|+
T Consensus 140 ~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 140 RGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCccceEEEEECCHHHHHHHH
Confidence 24789999999999997665
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4e-22 Score=176.39 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=117.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|+|||+|.+.++|.+|+..|||..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 379999999999999999999999999999999985 5778999999999999999999999999999999999999655
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-------
Q 009076 445 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 517 (544)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------- 517 (544)
... ...+..++.+.|+ +.++++ ++|+++|++||.|..+
T Consensus 80 ~~~-------------------------~~~~~~~l~v~nl--~~~~t~--------~~l~~~f~~~G~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS-------------------------SSDDTFNLFVGDL--NVNVDD--------ETLRNAFKDFPSYLSGHVMWDMQ 124 (166)
T ss_dssp CCC-------------------------CCTTCEEEEEESC--CTTCCH--------HHHHHHHTTSTTEEEEEEEECTT
T ss_pred CCC-------------------------CCCCCceEEECCC--CCCCCH--------HHHHHHHhccCCeeEEEEEecCC
Confidence 321 2345678889888 444333 3899999999999988
Q ss_pred --ccCceEEEEecCCCCCCCce
Q 009076 518 --FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 --~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+++
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCcceEEEEEeCCHHHHHHHH
Confidence 34689999999999997665
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.87 E-value=6.8e-22 Score=183.03 Aligned_cols=147 Identities=21% Similarity=0.385 Sum_probs=116.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999988443
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-------
Q 009076 445 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 517 (544)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------- 517 (544)
. ....... ... . ...+..++++.|+ +.++++ ++|+++|++||.|..|
T Consensus 109 ~-----~~~~~~~----~~~-~------~~~~~~~l~v~nl--p~~~t~--------~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 109 G-----QAQPIID----QLA-E------EARAFNRIYVASV--HQDLSD--------DDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp G-----GGHHHHH----HHH-H------HHTTSCEEEEECC--CTTCCH--------HHHHHHHTTSSCEEEEEEEECTT
T ss_pred c-----ccchhhh----hhh-c------ccCCCcEEEEeCC--CCcCCH--------HHHHHHHhccCCeeEEEEEecCC
Confidence 2 1111110 000 0 1235678888888 333332 4899999999999988
Q ss_pred --ccCceEEEEecCCCCCCCce
Q 009076 518 --FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 --~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+|+
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCcCceEEEEecCHHHHHHHH
Confidence 23789999999999996664
No 27
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=2e-21 Score=170.11 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=107.5
Q ss_pred cCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEE
Q 009076 289 NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRI 367 (544)
Q Consensus 289 ~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 367 (544)
..++|||||+|.+.++|++|+ .+++....+..+.+............ ..............+|
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG----------------SHHHHHHMDVEGMTSL 73 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC----------------CCCSSCCCCCCBCCEE
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc----------------ccccccccCCCCCCEE
Confidence 357999999999999999999 77764433333333211110000000 0000011122345689
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Q 009076 368 FVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 445 (544)
Q Consensus 368 ~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 445 (544)
||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+....
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999999999998899999999999999999999999999999999999999997654
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.86 E-value=3.5e-22 Score=182.01 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=115.1
Q ss_pred CCEEEEcCCC-CCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 364 PDRIFVGGLP-YYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 364 ~~~l~v~nl~-~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.++|||+||| ..+++++|+++|++||.|..|+|+.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.|+.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4589999999 899999999999999999999998763 7999999999999999999999999999999999997
Q ss_pred CCCCCCChh---hH------H--HH-HHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhh
Q 009076 443 QGANQPKPE---QE------S--VL-LHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGK 510 (544)
Q Consensus 443 ~~~~~~~~~---~~------~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~ 510 (544)
.....+... .. . .. ....... ..........|..+|++.|+ +.++++ ++|+++|++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~p~~~l~v~NL--p~~~t~--------~~L~~~F~~ 146 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTP--EQAAKNRIQHPSNVLHFFNA--PLEVTE--------ENFFEICDE 146 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSH--HHHTTSCCCCCCSEEEEEEE--CTTCCH--------HHHHHHHHH
T ss_pred CCccCCCcccccccCCccccccCCCccccccCc--ccccccccCCCcceEEEeCC--CCCCCH--------HHHHHHHHh
Confidence 554322110 00 0 00 0000000 00001112345678888888 444433 389999999
Q ss_pred cCCc--eee-------ccCceEEEEecCCCCCCCce
Q 009076 511 FAFC--SPT-------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 511 fG~V--~~i-------~~~g~a~V~f~~~~~A~a~~ 537 (544)
||.| ..+ ...|+|||+|.+.++|.+|+
T Consensus 147 ~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 147 LGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp HTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHH
T ss_pred cCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHH
Confidence 9999 565 12489999999999997665
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.85 E-value=1.1e-21 Score=175.10 Aligned_cols=137 Identities=20% Similarity=0.379 Sum_probs=115.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCC--CcceEEEEEEcChHHHHHHHHHhCCCeeC---CeEEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG--NSKGYAFCVYQDLSVTDIACAALNGIKMG---DKTLTVR 439 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~e~A~~A~~~l~g~~~~---g~~i~v~ 439 (544)
++|||+|||+.+++++|+++|++||.|..|.|+.++.+| .++|||||+|.+.++|.+|+..|||..+. ++.|.+.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence 589999999999999999999999999999999998776 88999999999999999999999998875 6888888
Q ss_pred EcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee--
Q 009076 440 RANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-- 517 (544)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-- 517 (544)
++..... ...+...+++.|+ +.++++ ++|+++|++||.|..+
T Consensus 84 ~~~~~~~--------------------------~~~~~~~l~v~nl--~~~~t~--------~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 84 PADSEKN--------------------------NAVEDRKLFIGMI--SKKCTE--------NDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp ECGGGCC--------------------------SCGGGSEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEE
T ss_pred ccccccc--------------------------ccCCCCeEEEcCC--CCcCCH--------HHHHHHHHhCCCEEEEEE
Confidence 8743322 1234667888888 443333 3899999999999988
Q ss_pred ------ccCceEEEEecCCCCCCCce
Q 009076 518 ------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ------~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+|+
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHH
Confidence 24789999999999996654
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.85 E-value=9.2e-21 Score=182.93 Aligned_cols=81 Identities=16% Similarity=0.381 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
.+.++|||+|||..+++++|+ ++|+.||.|..|.|+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 345699999999999999966 9999999999999886 578899999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 009076 438 VRRANQGA 445 (544)
Q Consensus 438 v~~~~~~~ 445 (544)
|.|+....
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99996544
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.84 E-value=5.5e-22 Score=175.72 Aligned_cols=134 Identities=17% Similarity=0.301 Sum_probs=112.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++...
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccch
Confidence 5899999999999999999999999999999999988999999999999999999999974 68999999999998332
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-------
Q 009076 445 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 517 (544)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i------- 517 (544)
.. ..+...+++.|+ +.++++ ++|+++|++||.|..+
T Consensus 82 -----~~----------------------~~~~~~l~V~nl--p~~~t~--------~~l~~~F~~~G~i~~~~i~~~~~ 124 (167)
T 2cjk_A 82 -----DE----------------------QDKTGKIFVGGI--GPDVRP--------KEFEEFFSQWGTIIDAQLMLDKD 124 (167)
T ss_dssp -----HH----------------------HHHCEEEEEEEE--CTTCCH--------HHHHHHHHTTSCCSEEECCCSSS
T ss_pred -----hh----------------------ccCCCeEEECCC--CCCCCH--------HHHHHHHHhCccEEEEEEEEcCC
Confidence 10 012456777777 333332 3899999999999888
Q ss_pred --ccCceEEEEecCCCCCCCce
Q 009076 518 --FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 --~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+++
T Consensus 125 ~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 125 TGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp SSTTSEEEEEEESSHHHHHHHH
T ss_pred CCccceEEEEEECCHHHHHHHH
Confidence 34689999999999996664
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=1.8e-20 Score=174.67 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=118.5
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 362 EGPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 362 ~~~~~l~v~nl~~-~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
.+.++|||+|||. .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4457999999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhHH--HHHHHHHHH------HHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcC
Q 009076 441 ANQGANQPKPEQES--VLLHAQQQI------ALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 512 (544)
Q Consensus 441 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG 512 (544)
+............. ......... ............+..++++.|+ +.++++ ++|+++|++||
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl--p~~~t~--------~~l~~~f~~~G 176 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI--PPSVSE--------EDLKVLFSSNG 176 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECC--CTTCCH--------HHHHHHHHTTS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCC--CccCCH--------HHHHHHHHHcC
Confidence 97653221110000 000000000 0000000112345788999988 333332 48999999999
Q ss_pred -Cceee----ccCceEEEEecCCCCCCCce
Q 009076 513 -FCSPT----FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 513 -~V~~i----~~~g~a~V~f~~~~~A~a~~ 537 (544)
.|..| ...|+|||+|.+.++|.+++
T Consensus 177 ~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 177 GVVKGFKFFQKDRKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp CCEEEEEECSSSTTCEEEEESSHHHHHHHH
T ss_pred CCeeEEEEEECCCcEEEEEECCHHHHHHHH
Confidence 99888 47899999999999996654
No 33
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=3.5e-21 Score=171.89 Aligned_cols=139 Identities=9% Similarity=0.144 Sum_probs=114.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 34568999999999999999999999998877 33444457888999999999999999999 69999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee----
Q 009076 442 NQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---- 517 (544)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i---- 517 (544)
...... ...+..++++.|+ +.++++ ++|+++|++||.|..+
T Consensus 89 ~~~~~~-------------------------~~~~~~~l~v~nl--p~~~t~--------~~l~~~F~~~g~v~~~~~~~ 133 (175)
T 1fje_B 89 KGRDSK-------------------------KVRAARTLLAKNL--SFNITE--------DELKEVFEDALEIRLVSQDG 133 (175)
T ss_dssp CCSSCS-------------------------TTGGGGEEEEESC--CSSCCH--------HHHHHHCTTCSEEEEECSSS
T ss_pred CCcccc-------------------------ccccCCEEEEeCC--CCCCCH--------HHHHHHHHhcCeEEEecCCC
Confidence 654321 2235678899988 333333 3899999999999988
Q ss_pred ccCceEEEEecCCCCCCCce
Q 009076 518 FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+|+
T Consensus 134 ~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHH
T ss_pred CCceEEEEEECCHHHHHHHH
Confidence 56899999999999996664
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.83 E-value=1.6e-20 Score=178.65 Aligned_cols=127 Identities=20% Similarity=0.339 Sum_probs=110.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34468999999999999999999999999999999765 799999999999999999999999999999999998
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee----
Q 009076 442 NQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---- 517 (544)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i---- 517 (544)
.. ..++++.|+ +..+++ ++|+++|++||.|..|
T Consensus 94 ~~---------------------------------~~~l~v~nl--~~~~t~--------~~l~~~F~~~G~i~~v~i~~ 130 (261)
T 3sde_A 94 TH---------------------------------GAALTVKNL--SPVVSN--------ELLEQAFSQFGPVEKAVVVV 130 (261)
T ss_dssp CC---------------------------------SSEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEEEE
T ss_pred cc---------------------------------CCcccccCC--CCCCCH--------HHHHHHHHhcCCeEEEEeee
Confidence 32 356888888 333332 3899999999999988
Q ss_pred ----ccCceEEEEecCCCCCCCce
Q 009076 518 ----FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 518 ----~~~g~a~V~f~~~~~A~a~~ 537 (544)
...|+|||+|.+.++|.+|+
T Consensus 131 ~~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 131 DDRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp ETTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCcCcEEEEEeCCHHHHHHHH
Confidence 34899999999999996664
No 35
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=5.7e-20 Score=159.20 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=110.0
Q ss_pred cCCCcEEEEEecCHHHHHHHH-Hc-CCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCE
Q 009076 289 NHEKKFAFVEMRSVEEASNAM-AL-DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDR 366 (544)
Q Consensus 289 ~~~kg~afV~f~~~~~A~~Al-~l-~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (544)
..-+|+++|+|.+.++|++|+ .+ |+..+.| .|.+.++............ .............++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 75 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------HHHHMHRDSCPLDCK 75 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------CCCCSCSSSSTTSCE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------ccccccccCCCCCCE
Confidence 345899999999999999999 89 9999999 9999876432211100000 000011222344579
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 367 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 367 l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
|||+|||+.+++++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++
T Consensus 76 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 76 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999999999999999887 4899999999999999999999999999999999999554
No 36
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.82 E-value=4.4e-20 Score=164.22 Aligned_cols=130 Identities=19% Similarity=0.358 Sum_probs=107.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhc----C-------CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESF----G-------PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 432 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 432 (544)
.++|||+|||+.+++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 3589999999999999999999999 6 6666766544 899999999999999999 99999999
Q ss_pred CeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcC
Q 009076 433 DKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 512 (544)
Q Consensus 433 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG 512 (544)
|+.|.|.++..... ......+++.|+ +..+++ ++|+++|++||
T Consensus 77 g~~i~v~~~~~~~~---------------------------~~~~~~l~v~nl--p~~~t~--------~~l~~~f~~~G 119 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP---------------------------LPGAHKLFIGGL--PNYLND--------DQVKELLTSFG 119 (172)
T ss_dssp TEECEEECCSSCCC---------------------------CTTTTCEEEECC--CTTCCH--------HHHHHHHHTTS
T ss_pred CceeeecCCcccCC---------------------------CCCCCEEEEEcC--CCcCCH--------HHHHHHHHhcC
Confidence 99999999754422 122567888888 333332 48999999999
Q ss_pred Cceee---------ccCceEEEEecCCCCCCCce
Q 009076 513 FCSPT---------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 513 ~V~~i---------~~~g~a~V~f~~~~~A~a~~ 537 (544)
.|..+ ...|+|||+|.+.++|.+++
T Consensus 120 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 99988 23689999999999996654
No 37
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=144.66 Aligned_cols=79 Identities=30% Similarity=0.535 Sum_probs=76.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 5899999999999999999999999999999999988999999999999999999999999999999999999999943
No 38
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.81 E-value=4.2e-20 Score=168.43 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=116.4
Q ss_pred CEEEEcCCCC-CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 365 DRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 365 ~~l~v~nl~~-~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
++|||+|||+ .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 5899999999 99999999999999999999999874 78999999999999999999999999999999999975
Q ss_pred CCCCCChhhHHHH--HHHHHHHHHHHh------hcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcC-Cc
Q 009076 444 GANQPKPEQESVL--LHAQQQIALQRL------MLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA-FC 514 (544)
Q Consensus 444 ~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG-~V 514 (544)
............. ............ .......+..++++.|+ +.++++ ++|+++|++|| .|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl--~~~~~~--------~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI--PPSVSE--------EDLKVLFSSNGGVV 148 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCC--CTTCCH--------HHHHHHHHHTTSCC
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCC--CCCCCH--------HHHHHHHHHcCCCc
Confidence 5322110000000 000000000000 00012345788999988 333332 48999999999 99
Q ss_pred eee----ccCceEEEEecCCCCCCCce
Q 009076 515 SPT----FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 515 ~~i----~~~g~a~V~f~~~~~A~a~~ 537 (544)
..+ ...|+|||+|.+.++|.+++
T Consensus 149 ~~v~i~~~~~g~afV~f~~~~~A~~A~ 175 (198)
T 1qm9_A 149 KGFKFFQKDRKMALIQMGSVEEAVQAL 175 (198)
T ss_dssp CEEEESSTTSSCEEEECSSHHHHHHHH
T ss_pred eEEEEEeCCCcEEEEEeCCHHHHHHHH
Confidence 888 47899999999999996664
No 39
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.80 E-value=6.5e-20 Score=167.15 Aligned_cols=150 Identities=17% Similarity=0.309 Sum_probs=111.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhc----C-------CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESF----G-------PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 432 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 432 (544)
.++|||+|||+.+++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 3689999999999999999999999 4 45555553 44899999999999999999 89999999
Q ss_pred CeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcC
Q 009076 433 DKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 512 (544)
Q Consensus 433 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG 512 (544)
|+.|.|.++......+........ ............+..++++.|+ +.++++ ++|+++|++||
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v~nl--~~~~~~--------~~l~~~f~~~G 139 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSV-------YVPGVVSTVVPDSAHKLFIGGL--PNYLND--------DQVKELLTSFG 139 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSC-------CCTTSSCCCSSCCCCEEEEECC--CTTCCH--------HHHHHHHHTBS
T ss_pred CceEEEeCCCCCCCCCCCcCCCcC-------CCCCCccCCCCCCCCEEEEeCC--CCCCCH--------HHHHHHHHHcC
Confidence 999999998665332211000000 0000011122356788999988 333332 48999999999
Q ss_pred Cceee---------ccCceEEEEecCCCCCCCce
Q 009076 513 FCSPT---------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 513 ~V~~i---------~~~g~a~V~f~~~~~A~a~~ 537 (544)
.|..+ ...|+|||+|.+.++|.+++
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 173 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 173 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHH
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Confidence 99888 23789999999999996654
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=139.16 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=75.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcC-CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHh-CCCeeCCeEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFG-PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL-NGIKMGDKTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l-~g~~~~g~~i~v~~~~ 442 (544)
++|||+|||+.+|+++|+++|++|| .|.+|.|++++.+|.++|||||+|.+.++|.+|+..| ++..|+|+.|.|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7999999999999999999999999999999999887 5678999999999996
Q ss_pred CCC
Q 009076 443 QGA 445 (544)
Q Consensus 443 ~~~ 445 (544)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=141.10 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999984
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=137.05 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCC--ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC----eeCCeEEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGP--LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI----KMGDKTLT 437 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~----~~~g~~i~ 437 (544)
..+|||+|||+.+|+++|+++|++||. |..|+|++++.+|.++|||||+|.+.++|.+|+..|||. .|+|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 358999999999999999999999995 679999999999999999999999999999999999996 58999999
Q ss_pred EEEcCC
Q 009076 438 VRRANQ 443 (544)
Q Consensus 438 v~~~~~ 443 (544)
|.||..
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999853
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=131.69 Aligned_cols=81 Identities=28% Similarity=0.427 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999954
Q ss_pred C
Q 009076 444 G 444 (544)
Q Consensus 444 ~ 444 (544)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=9e-18 Score=129.50 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=76.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
.+|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999999999889999999999999999999999999999999999999999654
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=132.44 Aligned_cols=83 Identities=24% Similarity=0.470 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|+|||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34456899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCC
Q 009076 441 ANQ 443 (544)
Q Consensus 441 ~~~ 443 (544)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 853
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.2e-17 Score=132.59 Aligned_cols=82 Identities=33% Similarity=0.605 Sum_probs=78.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999966
Q ss_pred CC
Q 009076 444 GA 445 (544)
Q Consensus 444 ~~ 445 (544)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2.2e-17 Score=135.93 Aligned_cols=86 Identities=26% Similarity=0.409 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 44568999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 009076 442 NQGANQ 447 (544)
Q Consensus 442 ~~~~~~ 447 (544)
......
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 776543
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=134.34 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76643
No 49
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.9e-18 Score=146.04 Aligned_cols=123 Identities=21% Similarity=0.324 Sum_probs=80.3
Q ss_pred EEEEEecCHHHHHHHH-HcCCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCC
Q 009076 294 FAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGL 372 (544)
Q Consensus 294 ~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 372 (544)
++|++|.+...+..|| .+++....|..- +.+.. ........++|||+||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------~~~~~~~~~~l~V~nL 55 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------PPPDVEGMTSLKVDNL 55 (135)
T ss_dssp ------------------------------CCSCC-----------------------------SCSSGGGCCCEEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------CCCCCCCCCEEEEeCC
Confidence 6788899999999999 787765544321 11100 0111223468999999
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 373 PYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 373 ~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
|..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.....
T Consensus 56 p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 56 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999988999999999999999999999999999999999999999976543
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=132.07 Aligned_cols=80 Identities=21% Similarity=0.442 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45568999999999999999999999999999999999888999999999999999999999999999999999999997
No 51
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=132.75 Aligned_cols=84 Identities=26% Similarity=0.427 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 44689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
....
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 6644
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=134.56 Aligned_cols=86 Identities=29% Similarity=0.416 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976643
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1e-17 Score=129.84 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|+|||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4468999999999999999999999999999999999889999999999999999999999999999999999999997
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=1.6e-18 Score=142.48 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=67.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
..+|||+|||+.+|+++|+++|+.||.|..+. ++.+ .+.++|||||+|.+.++|.+|| .|++..|.|+.|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~------i~~d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCK------VVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEEE--TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEE------Eeec--CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45799999999999999999999999886653 2222 3446899999999999999999 8999999999999
Q ss_pred EcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHH
Q 009076 323 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ 380 (544)
Q Consensus 323 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~ 380 (544)
|.++.......... ........+|||+|||+.+|++.
T Consensus 77 V~~a~~~~~~~~~~---------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 77 VGRFKSRKEREAEL---------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEESSCCCC-------------------------------------------------
T ss_pred EEECCCcccccccc---------------------ccccCCCCceEeCCCCCCccccc
Confidence 98865432211100 00111224799999999999863
No 55
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=134.67 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 44579999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
....
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7654
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=132.35 Aligned_cols=84 Identities=31% Similarity=0.618 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
++++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45699999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
.+..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6643
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=133.88 Aligned_cols=86 Identities=26% Similarity=0.559 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34557999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976643
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.3e-18 Score=134.85 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=72.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcC--CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFG--PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
+|||+|||+.+++++|+++|+.|| .|..+.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 799999999999999999999999 999999999988999999999999999999999999999999999999999965
Q ss_pred CC
Q 009076 444 GA 445 (544)
Q Consensus 444 ~~ 445 (544)
..
T Consensus 83 ~~ 84 (90)
T 3p5t_L 83 LE 84 (90)
T ss_dssp --
T ss_pred Cc
Confidence 53
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=132.05 Aligned_cols=84 Identities=31% Similarity=0.535 Sum_probs=79.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEE-EEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGF-DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+.++|||+|||..+++++|+++|+.||.|..| .|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44699999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76643
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=2.4e-17 Score=135.62 Aligned_cols=85 Identities=22% Similarity=0.407 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34468999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76654
No 61
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=133.89 Aligned_cols=85 Identities=28% Similarity=0.430 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34557999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009076 441 ANQGA 445 (544)
Q Consensus 441 ~~~~~ 445 (544)
+....
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 96654
No 62
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=132.29 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC--CCeeCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~i~v~ 439 (544)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+ |..|.|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34569999999999999999999999999999999986 7999999999999999999886 478999999999
Q ss_pred EcCCCCCCC
Q 009076 440 RANQGANQP 448 (544)
Q Consensus 440 ~~~~~~~~~ 448 (544)
|+..+....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 997765543
No 63
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=1.5e-17 Score=136.68 Aligned_cols=80 Identities=23% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
..+|||+|||+.+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3589999999999999999999999999999999884 45799999999999999999999999999999999999965
Q ss_pred CC
Q 009076 444 GA 445 (544)
Q Consensus 444 ~~ 445 (544)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 64
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.8e-17 Score=124.62 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..-|+|+||++.+||++|+++|.+||+|.++.+... +|||||+|.+.++|.+|++.|||..|+|++|.|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~------kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN------QGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC------CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 347999999999999999999999999999999764 899999999999999999999999999999999998
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=131.74 Aligned_cols=84 Identities=26% Similarity=0.503 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. |||..|.|+.|.|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 345699999999999999999999999999999999998899999999999999999999997 9999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76654
No 66
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=129.63 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCe--eCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK--MGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~--~~g~~i~v~ 439 (544)
.+.++|||+|||+.+++++|+++|++||.|..|.+++. +|+|||+|.+.++|.+|+..|+|.. |.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 35568999999999999999999999999999999865 7899999999999999999999875 789999999
Q ss_pred EcCCC
Q 009076 440 RANQG 444 (544)
Q Consensus 440 ~~~~~ 444 (544)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99665
No 67
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-17 Score=133.59 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC------CCeeCCe
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN------GIKMGDK 434 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~------g~~~~g~ 434 (544)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|| |..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3455689999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEcCCCCC
Q 009076 435 TLTVRRANQGAN 446 (544)
Q Consensus 435 ~i~v~~~~~~~~ 446 (544)
.|.|.|+.....
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999976644
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=132.56 Aligned_cols=83 Identities=22% Similarity=0.416 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCce-EEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeE----E
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLR-GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT----L 436 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~----i 436 (544)
...++|||+|||..+++++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4457999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEEcCCC
Q 009076 437 TVRRANQG 444 (544)
Q Consensus 437 ~v~~~~~~ 444 (544)
.|.|+...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999655
No 69
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.5e-17 Score=133.43 Aligned_cols=85 Identities=28% Similarity=0.475 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee---CCeEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM---GDKTLTV 438 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~~i~v 438 (544)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4456899999999999999999999999999999999988999999999999999999999999999988 8999999
Q ss_pred EEcCCCCC
Q 009076 439 RRANQGAN 446 (544)
Q Consensus 439 ~~~~~~~~ 446 (544)
.|+.....
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99976543
No 70
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=131.68 Aligned_cols=80 Identities=26% Similarity=0.396 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceE--------EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRG--------FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 433 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g 433 (544)
...++|||+|||..+++++|+++|+.||.|.. |.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34568999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEEEc
Q 009076 434 KTLTVRRA 441 (544)
Q Consensus 434 ~~i~v~~~ 441 (544)
+.|.|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999997
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=134.50 Aligned_cols=84 Identities=33% Similarity=0.651 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
..++++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34456899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009076 441 ANQG 444 (544)
Q Consensus 441 ~~~~ 444 (544)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9654
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=130.21 Aligned_cols=83 Identities=25% Similarity=0.577 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345689999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6653
No 73
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=3.6e-18 Score=172.91 Aligned_cols=84 Identities=24% Similarity=0.466 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.++|||+|||+.+|+++|.++|++||.|+.|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34569999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 6543
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=132.06 Aligned_cols=85 Identities=25% Similarity=0.455 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccC-CCCCCcceEEEEEEcChHHHHHHHHHh-CCCeeCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD-RETGNSKGYAFCVYQDLSVTDIACAAL-NGIKMGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~e~A~~A~~~l-~g~~~~g~~i~v~ 439 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.+ ..+|.++|||||+|.+.++|.+|+..| ||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34568999999999999999999999999999999998 779999999999999999999999999 9999999999999
Q ss_pred EcCCCCC
Q 009076 440 RANQGAN 446 (544)
Q Consensus 440 ~~~~~~~ 446 (544)
|+.....
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9976644
No 75
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=128.27 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCcHHHHH----HHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44689999999999999999 99999999999999988654 889999999999999999999999999999999
Q ss_pred EEcCCCC
Q 009076 439 RRANQGA 445 (544)
Q Consensus 439 ~~~~~~~ 445 (544)
.|+.+..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9996553
No 76
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=131.02 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCC---CCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE---TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
+.++|||+|||..+++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 446899999999999999999999999999999998765 56889999999999999999999999999999999999
Q ss_pred EcCCCCC
Q 009076 440 RANQGAN 446 (544)
Q Consensus 440 ~~~~~~~ 446 (544)
|+.....
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9976643
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.1e-17 Score=132.42 Aligned_cols=85 Identities=24% Similarity=0.351 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCce--------EEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLR--------GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 433 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g 433 (544)
...++|||+|||..+++++|+++|+.||.|. .|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4557999999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCC
Q 009076 434 KTLTVRRANQGAN 446 (544)
Q Consensus 434 ~~i~v~~~~~~~~ 446 (544)
+.|.|.|+.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999976644
No 78
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=9.1e-18 Score=134.13 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=75.1
Q ss_pred CEEEEcCCCC------CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC-eEEE
Q 009076 365 DRIFVGGLPY------YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD-KTLT 437 (544)
Q Consensus 365 ~~l~v~nl~~------~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g-~~i~ 437 (544)
++|||+|||. .+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.| +.|.
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~ 86 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLF 86 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEE
Confidence 5899999999 99999999999999999999999998899999999999999999999999999999999 9999
Q ss_pred EEEc
Q 009076 438 VRRA 441 (544)
Q Consensus 438 v~~~ 441 (544)
|.++
T Consensus 87 V~~a 90 (100)
T 3ns6_A 87 LYTM 90 (100)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9998
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=129.41 Aligned_cols=80 Identities=31% Similarity=0.525 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3446899999999999999999999999999999999864 899999999999999999999999999999999999998
Q ss_pred C
Q 009076 442 N 442 (544)
Q Consensus 442 ~ 442 (544)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 80
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=133.20 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 34589999999999999999999999999999999998899999999999999999999999999999999999999996
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
.+
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 81
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7e-17 Score=128.23 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHh--CCCeeCCeEEE
Q 009076 360 GLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL--NGIKMGDKTLT 437 (544)
Q Consensus 360 ~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~~~g~~i~ 437 (544)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| ++..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3345679999999999999999999999999999999876 799999999999999999987 47889999999
Q ss_pred EEEcCCCCCC
Q 009076 438 VRRANQGANQ 447 (544)
Q Consensus 438 v~~~~~~~~~ 447 (544)
|.|+......
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999766543
No 82
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=133.73 Aligned_cols=83 Identities=28% Similarity=0.540 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44699999999999999999999999999999999997 89999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6653
No 83
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=8.5e-17 Score=130.07 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC---eEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD---KTLTV 438 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g---~~i~v 438 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345799999999999999999999999999999999986 79999999999999999999999999999988 99999
Q ss_pred EEcCCCC
Q 009076 439 RRANQGA 445 (544)
Q Consensus 439 ~~~~~~~ 445 (544)
.|+....
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9996654
No 84
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=130.97 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44568999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
No 85
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-16 Score=127.80 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 4557999999999999999999999999999999999843 36899999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 76543
No 86
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=5.9e-17 Score=131.52 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|+|||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 445689999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred C
Q 009076 442 N 442 (544)
Q Consensus 442 ~ 442 (544)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.2e-17 Score=130.29 Aligned_cols=83 Identities=25% Similarity=0.545 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.++|||+|||..+++++|+++|+.|| |..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4456899999999999999999999997 999999999889999999999999999999999 99999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 88
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=130.45 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45578999999999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 76643
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=4.8e-17 Score=132.72 Aligned_cols=82 Identities=29% Similarity=0.348 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 34589999999999999999999999999999999998899999999999999999999999999999999999999996
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
.+
T Consensus 105 ~~ 106 (110)
T 1oo0_B 105 VK 106 (110)
T ss_dssp ES
T ss_pred cC
Confidence 54
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.5e-17 Score=137.84 Aligned_cols=84 Identities=24% Similarity=0.439 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009076 441 ANQG 444 (544)
Q Consensus 441 ~~~~ 444 (544)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9654
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=5.5e-17 Score=142.58 Aligned_cols=141 Identities=21% Similarity=0.166 Sum_probs=79.3
Q ss_pred EEecCHHHHHHHH-HcCCceeC--CceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCC
Q 009076 297 VEMRSVEEASNAM-ALDGIIFE--GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLP 373 (544)
Q Consensus 297 V~f~~~~~A~~Al-~l~~~~l~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 373 (544)
.+|.+.++|..|+ .+++.... |+.+...+........ ....... ...............++|||+|||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~------~~~~~~s---~~~~~~~~~~~~~~~~~l~V~nLp 81 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS------YERVRNE---DDDELEPGPQRSVEGWILFVTSIH 81 (165)
T ss_dssp ----------------------------------------------------------------CCCCC-CEEEEEESCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC------ccccccC---CCCCCCCCCCCCCCCCEEEEeCCC
Confidence 7899999999999 78876554 5444444321100000 0000000 000000011122334689999999
Q ss_pred CCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCCCC
Q 009076 374 YYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 446 (544)
Q Consensus 374 ~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 446 (544)
+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.....
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999988999999999999999999999999999999999999999966543
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=131.09 Aligned_cols=86 Identities=20% Similarity=0.432 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ||..|.|+.|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34557999999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred cCCCCCC
Q 009076 441 ANQGANQ 447 (544)
Q Consensus 441 ~~~~~~~ 447 (544)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9776544
No 93
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=7e-17 Score=126.28 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=75.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..+.|+.++.+|.++|+|||+|.+.++|.+|+ .|||..|.|+.|.|.++...
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 58999999999999999999999999999999999889999999999999999999999 99999999999999999654
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=130.30 Aligned_cols=83 Identities=28% Similarity=0.514 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC-CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET-GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
.+.++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999 999999999877 999999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+..+..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 976643
No 95
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=126.85 Aligned_cols=81 Identities=21% Similarity=0.441 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCC-cceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN-SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
+++|||+|||..+++++|+++|++||.|..|.|+.+..++. ++|+|||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999999876655 89999999999999999999999999999999999995
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 96
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=127.64 Aligned_cols=84 Identities=21% Similarity=0.512 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34557999999999999999999999999999999998853 3799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cq3_A 90 ATARVM 95 (103)
T ss_dssp CCSSCC
T ss_pred cccCCC
Confidence 976654
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=7.8e-17 Score=133.30 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 44578999999999999999999999999999999999889999999999999999999999999999999999999997
No 98
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.9e-17 Score=131.33 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.++++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34568999999999999999999999999999988888889999999999999999999999999999999999999998
Q ss_pred C
Q 009076 442 N 442 (544)
Q Consensus 442 ~ 442 (544)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 99
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.2e-17 Score=129.28 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC--eeCCeEEEE
Q 009076 362 EGPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI--KMGDKTLTV 438 (544)
Q Consensus 362 ~~~~~l~v~nl~~-~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~--~~~g~~i~v 438 (544)
.+.++|||+|||+ .+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..|||. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3557899999999 9999999999999999999999876 689999999999999999999864 599999999
Q ss_pred EEcCCC
Q 009076 439 RRANQG 444 (544)
Q Consensus 439 ~~~~~~ 444 (544)
.|+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999754
No 100
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=9.7e-17 Score=124.84 Aligned_cols=79 Identities=20% Similarity=0.520 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .++|..|.|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 34569999999999999999999999999999999999889999999999999999999999 55889999999999885
No 101
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=131.19 Aligned_cols=82 Identities=35% Similarity=0.623 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++ .|.|+.|.|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4457899999999999999999999999999999999988999999999999999999999999998 899999999999
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 654
No 102
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=129.87 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 445689999999999999999999999999999999986 6899999999999999999999999999999999999998
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 654
No 103
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=130.89 Aligned_cols=83 Identities=28% Similarity=0.382 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHh-cCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCe-eCCeEEEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLES-FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK-MGDKTLTVRR 440 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~-~~g~~i~v~~ 440 (544)
+.++|||+|||..+++++|+++|+. ||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||.. |.|+.|.|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4468999999999999999999999 9999999999997 99999999999999999999999999999 9999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 966543
No 104
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=9.6e-17 Score=126.35 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4569999999999999999999999999999999985 78899999999999999999999999999999999999996
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 105
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=4.2e-16 Score=130.03 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3455689999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 976544
No 106
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=8.9e-17 Score=139.01 Aligned_cols=80 Identities=24% Similarity=0.428 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcC--CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFG--PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
...+|||+|||+.+++++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009076 441 AN 442 (544)
Q Consensus 441 ~~ 442 (544)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 93
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2.9e-17 Score=123.87 Aligned_cols=75 Identities=24% Similarity=0.546 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|+|||+|.+.++|.+|+. |||..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999996 9999999999999885
No 108
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-16 Score=126.16 Aligned_cols=85 Identities=22% Similarity=0.394 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ++..|.|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3455689999999999999999999999999999999998899999999999999999999997 57899999999999
Q ss_pred cCCCCCC
Q 009076 441 ANQGANQ 447 (544)
Q Consensus 441 ~~~~~~~ 447 (544)
+..+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9776543
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.4e-17 Score=130.59 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC--CCeeCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~i~v~ 439 (544)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+ +..|.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34568999999999999999999999999999999986 7999999999999999999987 468999999999
Q ss_pred EcCCCCCC
Q 009076 440 RANQGANQ 447 (544)
Q Consensus 440 ~~~~~~~~ 447 (544)
|+..+...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99776543
No 110
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=127.88 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC--eeCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI--KMGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~--~~~g~~i~v~ 439 (544)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++. .|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45579999999999999999999999999999999875 789999999999999999988754 5999999999
Q ss_pred EcCCCCC
Q 009076 440 RANQGAN 446 (544)
Q Consensus 440 ~~~~~~~ 446 (544)
|+..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9976543
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=8.8e-17 Score=134.65 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 34589999999999999999999999999999999998899999999999999999999999999999999999999996
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
....
T Consensus 101 ~~~~ 104 (126)
T 3ex7_B 101 VRGP 104 (126)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 6543
No 112
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.3e-17 Score=130.61 Aligned_cols=80 Identities=41% Similarity=0.735 Sum_probs=76.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999544
No 113
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=129.70 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..+ |..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34568999999999999999999999999999999999889999999999999999999999876 59999999999999
Q ss_pred CCCCCC
Q 009076 442 NQGANQ 447 (544)
Q Consensus 442 ~~~~~~ 447 (544)
......
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 766543
No 114
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=3.8e-16 Score=133.20 Aligned_cols=86 Identities=35% Similarity=0.543 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34557999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976643
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=123.15 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||+.+++++|+++|+.| .|..|.|+.+ .+|.++|+|||+|.+.++|.+|+. |||..|+|+.|.|.++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 44689999999999999999999999 9999999998 789999999999999999999999 99999999999999996
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 55
No 116
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.9e-17 Score=130.07 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=72.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+|||+|||+.+|+++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.++
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 5899999999999999999999999999999999976 9999999999999999999997 9999999999999997
No 117
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=130.29 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCcHHHHH---HHHHhcCCceEEEEccCCCCC---CcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIR---ELLESFGPLRGFDLVKDRETG---NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~---~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 34689999999999999999 999999999999999887644 456999999999999999999999999999999
Q ss_pred EEEEcCCCCC
Q 009076 437 TVRRANQGAN 446 (544)
Q Consensus 437 ~v~~~~~~~~ 446 (544)
.|.|+..+..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999977653
No 118
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=1.6e-16 Score=130.68 Aligned_cols=77 Identities=23% Similarity=0.488 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4468999999999999999999999999999999875 4558999999999999999999999999999999999993
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=134.90 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 360 GLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 360 ~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
......+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ec
Q 009076 440 RA 441 (544)
Q Consensus 440 ~~ 441 (544)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=128.54 Aligned_cols=82 Identities=22% Similarity=0.528 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3455799999999999999999999999999999999884 44799999999999999999999999999999999999
Q ss_pred cCCC
Q 009076 441 ANQG 444 (544)
Q Consensus 441 ~~~~ 444 (544)
+..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9654
No 121
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.9e-16 Score=136.71 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 122
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=131.18 Aligned_cols=76 Identities=18% Similarity=0.402 Sum_probs=74.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 68999999999999999999999999999999999888999999999999999999999 99999999999999998
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=127.82 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCe-EE
Q 009076 364 PDRIFVGGLPYYF------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TL 436 (544)
Q Consensus 364 ~~~l~v~nl~~~~------~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~i 436 (544)
.++|||+|||+.+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4689999999999 8899999999999999999983 5899999999999999999999999999999998 99
Q ss_pred EEEEcCCC
Q 009076 437 TVRRANQG 444 (544)
Q Consensus 437 ~v~~~~~~ 444 (544)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998543
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-17 Score=128.03 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4569999999999999999999999999999999999889999999999999999999999999999999999988776
No 125
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=126.07 Aligned_cols=81 Identities=23% Similarity=0.399 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34578999999999999999999999999999999654 557899999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7654
No 126
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=136.35 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceE--EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC----eeCCeE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI----KMGDKT 435 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~----~~~g~~ 435 (544)
...++|||+|||+.+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+. +|.+|+..|||. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45578999999999999999999999999977 99999988999999999999999 999999999999 999999
Q ss_pred EEEEEcCCC
Q 009076 436 LTVRRANQG 444 (544)
Q Consensus 436 i~v~~~~~~ 444 (544)
|.|.|+...
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999665
No 127
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=130.55 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=70.8
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
-+..+|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAK------LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeE------eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3567899999999999999999999999887664 3444556888999999999999999999 89999999999
Q ss_pred eEEcCCC
Q 009076 321 VKVRRPS 327 (544)
Q Consensus 321 l~v~~~~ 327 (544)
|.|.++.
T Consensus 91 l~V~~Ak 97 (99)
T 4fxv_A 91 IKVSYAR 97 (99)
T ss_dssp CEEEECC
T ss_pred EEEEEee
Confidence 9999864
No 128
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.9e-17 Score=128.74 Aligned_cols=81 Identities=35% Similarity=0.525 Sum_probs=73.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.+ |.+|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 37999999999999999999999999999999999889999999999999999 99999999999999999999999655
Q ss_pred CC
Q 009076 445 AN 446 (544)
Q Consensus 445 ~~ 446 (544)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 129
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.7e-17 Score=122.60 Aligned_cols=76 Identities=26% Similarity=0.480 Sum_probs=73.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|.+|+..|+ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999998889999999999999999999999999 9999999999987
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-17 Score=129.68 Aligned_cols=81 Identities=27% Similarity=0.518 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCC-CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR-ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
...++|||+|||..+++++|+++|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4457999999999999999999999999 9999999987 58999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 009076 441 ANQG 444 (544)
Q Consensus 441 ~~~~ 444 (544)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9654
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=127.00 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||+.+++++|+++|++||. +.|.|+.++ +|.++|||||+|.+.++|.+|| .+|+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 344579999999999999999999999995 599999997 8999999999999999999999 5899999999999999
Q ss_pred cCCC
Q 009076 441 ANQG 444 (544)
Q Consensus 441 ~~~~ 444 (544)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8554
No 132
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2.7e-16 Score=129.54 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCC---ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGP---LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
...++|||+|||+.+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34568999999999999999999999999 89999999875 9999999999999999999998 9999999999999
Q ss_pred EEc
Q 009076 439 RRA 441 (544)
Q Consensus 439 ~~~ 441 (544)
.++
T Consensus 93 ~~a 95 (118)
T 2db1_A 93 FKS 95 (118)
T ss_dssp EEE
T ss_pred EEC
Confidence 998
No 133
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=129.30 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCc-eEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPL-RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....+|||+|||+.+++++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 445789999999999999999999999999 899999997 999999999999999999999976 99999999999999
Q ss_pred cC
Q 009076 441 AN 442 (544)
Q Consensus 441 ~~ 442 (544)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 83
No 134
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=129.64 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +|.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345689999999999998866 7999999999998854 578899999999999999999999999999999999
Q ss_pred EEEcCCC
Q 009076 438 VRRANQG 444 (544)
Q Consensus 438 v~~~~~~ 444 (544)
|.|+...
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999544
No 135
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=129.01 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +|..|.|+.|.|.|+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 36899999999999999999999999999999999988999999999999999999999977 99999999999999976
Q ss_pred CCC
Q 009076 444 GAN 446 (544)
Q Consensus 444 ~~~ 446 (544)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 644
No 136
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=124.46 Aligned_cols=80 Identities=33% Similarity=0.531 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345579999999999999999999999999999999876 78999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 976543
No 137
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=127.38 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEc-cCCCCCCcceEEEEEEcChHHHHHHHHHhC--CCeeCCeEEEEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLV-KDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVR 439 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~i~v~ 439 (544)
.++|||+|||..+++++|+++|+.||. |..|.|+ .+..+|.++|||||+|.+.++|.+|+..|| +..|.|+.|.|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 458999999999999999999999998 9999998 777788999999999999999999999996 599999999999
Q ss_pred EcCCCC
Q 009076 440 RANQGA 445 (544)
Q Consensus 440 ~~~~~~ 445 (544)
|+.+..
T Consensus 88 ~a~~~~ 93 (109)
T 2dis_A 88 WAEPEI 93 (109)
T ss_dssp ESCSSC
T ss_pred EcCCCC
Confidence 996654
No 138
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=123.93 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=69.7
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-Hc-CCceeCCce
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL-DGIIFEGAP 320 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l-~~~~l~g~~ 320 (544)
+++|||+|||+.+|+++|+++|++|| .|..+. ++.+..++.++|||||+|.+.++|.+|| .+ ++..|.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~------i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVR------LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCC------SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEE------EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 35899999999999999999999999 777765 4556678899999999999999999999 56 457799999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|.|.++...
T Consensus 75 i~V~~a~~~ 83 (91)
T 2lxi_A 75 VSMHYSDPK 83 (91)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987643
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=126.06 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceE-EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
...++|||+|||+.+++++|+++|+.||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34568999999999999999999999999987 888888 7899999999999999999999987 99999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 866543
No 140
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=124.16 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC-----eEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD-----KTLT 437 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g-----~~i~ 437 (544)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||..|||..|.| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4568999999999999999999999999999999876 799999999999999999999999999 9999
Q ss_pred EEEcCCCC
Q 009076 438 VRRANQGA 445 (544)
Q Consensus 438 v~~~~~~~ 445 (544)
|.++.+..
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99997654
No 141
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=3.6e-16 Score=130.47 Aligned_cols=79 Identities=22% Similarity=0.426 Sum_probs=75.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+...
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 68999999999999999999999999999999999889999999999999999999999 89999999999999999654
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.1e-16 Score=123.98 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEE
Q 009076 361 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 440 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~ 440 (544)
....++|||+|||..+++++|+++|++||.| .++.+ .+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3455799999999999999999999999977 55665 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009076 441 ANQGA 445 (544)
Q Consensus 441 ~~~~~ 445 (544)
+....
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97654
No 143
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=119.53 Aligned_cols=74 Identities=23% Similarity=0.429 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHh-CCCeeCCeEEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL-NGIKMGDKTLTVRR 440 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l-~g~~~~g~~i~v~~ 440 (544)
...++|||+|||..+++++|+++|++||.|..|.++.+ +|+|||+|.+.++|.+|+..| +|..+.|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34468999999999999999999999999999999875 799999999999999999989 99999999999999
Q ss_pred c
Q 009076 441 A 441 (544)
Q Consensus 441 ~ 441 (544)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 144
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.8e-16 Score=123.09 Aligned_cols=77 Identities=32% Similarity=0.613 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC--CeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG--DKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~--g~~i~v~ 439 (544)
.+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|||..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34468999999999999999999999999999999865 789999999999999999999999999 9999999
Q ss_pred EcCCC
Q 009076 440 RANQG 444 (544)
Q Consensus 440 ~~~~~ 444 (544)
|+.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99665
No 145
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=5.8e-16 Score=125.01 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcC-CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFG-PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..++|||+|||+.+++++|+++|+.|| .|..+.|... .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345899999999999999999999999 8999988643 36899999999999999999999999999999999998
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 146
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=122.21 Aligned_cols=72 Identities=25% Similarity=0.369 Sum_probs=67.4
Q ss_pred CEEEEcCCCCCC------cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCe-EEE
Q 009076 365 DRIFVGGLPYYF------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TLT 437 (544)
Q Consensus 365 ~~l~v~nl~~~~------~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~i~ 437 (544)
++|||+|||..+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|+..|||..|.|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 489999999999 7899999999999999999883 5889999999999999999999999999999999 887
Q ss_pred E
Q 009076 438 V 438 (544)
Q Consensus 438 v 438 (544)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 147
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=118.94 Aligned_cols=77 Identities=31% Similarity=0.450 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34568999999999999999999999999999999743 9999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76643
No 148
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.6e-16 Score=126.45 Aligned_cols=81 Identities=19% Similarity=0.453 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee--------CC
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM--------GD 433 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--------~g 433 (544)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345799999999999999999999999999999999997 899999999999999999999999999999 68
Q ss_pred eEEEEEEcCC
Q 009076 434 KTLTVRRANQ 443 (544)
Q Consensus 434 ~~i~v~~~~~ 443 (544)
++|.|.|+.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999964
No 149
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.7e-16 Score=119.68 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999996 5999999999999875
No 150
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.4e-16 Score=119.98 Aligned_cols=77 Identities=27% Similarity=0.492 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345689999999999999999999999999999997 569999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76644
No 151
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.9e-16 Score=126.52 Aligned_cols=78 Identities=22% Similarity=0.141 Sum_probs=71.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||+.+++++|+++|++||.|..|.|+.. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 48999999999999999999999999999998764 789999999999999999999999999999999999766
Q ss_pred CCCC
Q 009076 445 ANQP 448 (544)
Q Consensus 445 ~~~~ 448 (544)
....
T Consensus 85 ~~~~ 88 (111)
T 1whx_A 85 VFGA 88 (111)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 5433
No 152
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=124.87 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+|||+|||+.+++++|+++|+.| .|..|.|+.++. |.++|||||+|.+.++|.+|| .|||..|+|+.|.|..+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 489999999999999999999999 899999999864 999999999999999999999 79999999999999887
No 153
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=123.90 Aligned_cols=78 Identities=17% Similarity=0.397 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3468999999999999999999999999999999887 7899999999999999999999999999999999997
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6643
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-16 Score=127.84 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4568999999999999999999999999988 666666788999999999999999999998 99999999999999996
Q ss_pred CCC
Q 009076 443 QGA 445 (544)
Q Consensus 443 ~~~ 445 (544)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 155
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=4.5e-16 Score=130.67 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCC---ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGP---LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
..++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. |||..|+|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4468999999999999999999999999 89999999976 9999999999999999999998 99999999999999
Q ss_pred Ec
Q 009076 440 RA 441 (544)
Q Consensus 440 ~~ 441 (544)
++
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 98
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-16 Score=127.08 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC--CCeeCCeEEE
Q 009076 361 LEGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLT 437 (544)
Q Consensus 361 ~~~~~~l~v~nl~~~-~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~i~ 437 (544)
..+.++|||+|||+. +++++|+++|++||.|..|.|++. +|||||+|.+.++|..|+..|+ +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345679999999998 999999999999999999999865 7999999999999999999886 4569999999
Q ss_pred EEEcCCCC
Q 009076 438 VRRANQGA 445 (544)
Q Consensus 438 v~~~~~~~ 445 (544)
|.|+....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99996553
No 157
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-16 Score=132.16 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345799999999999999999999999999986666666789999999999999999999998 9999999999999998
Q ss_pred C
Q 009076 442 N 442 (544)
Q Consensus 442 ~ 442 (544)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=122.33 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|+.| ..|.++.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 455789999999999999999999977 36778888778999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
.++.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 159
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=117.37 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34468999999999999999999999999999999743 9999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
....
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 160
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=2.7e-15 Score=120.59 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|++||.|..|.|++ |||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4456899999999999999999999999999999873 49999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76654
No 161
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=6.1e-16 Score=123.01 Aligned_cols=79 Identities=16% Similarity=0.383 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHH----HHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
+.++|||+|||..+++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 44689999999999999999 9999999999999874 4677899999999999999999999999999999999
Q ss_pred EEcCCC
Q 009076 439 RRANQG 444 (544)
Q Consensus 439 ~~~~~~ 444 (544)
.|+...
T Consensus 84 ~~a~~~ 89 (97)
T 1nu4_A 84 QYAKTD 89 (97)
T ss_dssp EECSSC
T ss_pred EEccCC
Confidence 999654
No 162
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.4e-15 Score=114.32 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=65.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
+..|||+||++.+|+++|+++|.+||+ |.++.+..++|||||+|.+.++|.+|+ .||+..|.|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~------------V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGP------------LVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCC------------EEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 446999999999999999999999996 556666779999999999999999999 9999999999999
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|..+.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99873
No 163
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-16 Score=126.74 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCC---ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGP---LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
...++|||+|||+.+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34568999999999999999999999998 89999999976 9999999999999999999998 9999999999999
Q ss_pred EEc
Q 009076 439 RRA 441 (544)
Q Consensus 439 ~~~ 441 (544)
.++
T Consensus 87 ~~a 89 (107)
T 2lmi_A 87 YEI 89 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 998
No 164
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=122.52 Aligned_cols=75 Identities=21% Similarity=0.422 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|..|.|... +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3468999999999999999999999999999999854 8999999999999999999999999999999999985
Q ss_pred C
Q 009076 443 Q 443 (544)
Q Consensus 443 ~ 443 (544)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=115.60 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCE-EEEcCCCCCCcHHH----HHHHHHhcC-CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 364 PDR-IFVGGLPYYFTEAQ----IRELLESFG-PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 364 ~~~-l~v~nl~~~~~ee~----l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
+.+ |||+|||+.+++++ |+++|++|| .|.+| +| |+|||+|.+.++|++|++.|||..|.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 345 89999999999987 558999994 99988 33 9999999999999999999999999999999
Q ss_pred EEEcCCCCC
Q 009076 438 VRRANQGAN 446 (544)
Q Consensus 438 v~~~~~~~~ 446 (544)
|.|+.....
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999976643
No 166
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=6.4e-16 Score=142.78 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=75.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcC--CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFG--PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.++|||+||++.+++++|+++|+.|| .|+.|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 45899999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009076 442 N 442 (544)
Q Consensus 442 ~ 442 (544)
.
T Consensus 148 ~ 148 (229)
T 3q2s_C 148 N 148 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=119.72 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||+.+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3456999999999999999999999999997 666543 56899999999999999999999999999999999999
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
.++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=121.54 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=70.1
Q ss_pred CCCCEEEE--cCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee-----CCe
Q 009076 362 EGPDRIFV--GGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM-----GDK 434 (544)
Q Consensus 362 ~~~~~l~v--~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~-----~g~ 434 (544)
.+..+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34568999 779999999999999999999999988754 78999999999999999999999988 799
Q ss_pred EEEEEEcCCCC
Q 009076 435 TLTVRRANQGA 445 (544)
Q Consensus 435 ~i~v~~~~~~~ 445 (544)
+|.|.|+....
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999996443
No 169
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.8e-15 Score=122.43 Aligned_cols=75 Identities=21% Similarity=0.491 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 445799999999999999999999999999999997 679999999999999999999999999999999999
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
...
T Consensus 101 ~~~ 103 (108)
T 2jvo_A 101 KLP 103 (108)
T ss_dssp SCC
T ss_pred cCC
Confidence 655
No 170
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.7e-16 Score=128.54 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
.+.++|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34579999999999999999999999999954433322237888999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 76643
No 171
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=3.3e-15 Score=118.37 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~-~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..++|||+|||. .+++++|+++|+.||.|..|.|. +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 456899999998 99999999999999999999983 689999999999999999999999999999999998
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
...
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 172
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=9.2e-16 Score=122.93 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999877 5899999999999999999999999999999999999765
Q ss_pred C
Q 009076 445 A 445 (544)
Q Consensus 445 ~ 445 (544)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-15 Score=135.19 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 44689999999999999999999999999999999997 89999999999999999999999999999999999999995
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 44
No 174
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=122.48 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=71.1
Q ss_pred CEEEEcCC----CCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcC----hHH----HHHHHH--HhCCCe
Q 009076 365 DRIFVGGL----PYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD----LSV----TDIACA--ALNGIK 430 (544)
Q Consensus 365 ~~l~v~nl----~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~e~----A~~A~~--~l~g~~ 430 (544)
..|||+|| |+.+++++|+++|+.||.|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeEEEEEEcC
Q 009076 431 MGDKTLTVRRAN 442 (544)
Q Consensus 431 ~~g~~i~v~~~~ 442 (544)
|+|+.|.|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999973
No 175
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=120.81 Aligned_cols=78 Identities=15% Similarity=0.330 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 44689999999999999999999999988766 2468889999999999999999999999999999999999996
Q ss_pred CCC
Q 009076 443 QGA 445 (544)
Q Consensus 443 ~~~ 445 (544)
+..
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 553
No 176
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=6.1e-16 Score=124.00 Aligned_cols=75 Identities=29% Similarity=0.376 Sum_probs=64.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
++|||+|||+.+|+++|+++|++||.|..+. +... ++|||||+|.+.++|.+|+ .|++..|.|+.|.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~----------i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVW----------IARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEE----------EESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE----------EeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence 4799999999999999999999999764432 1111 7999999999999999999 79999999999999
Q ss_pred cCCCCCC
Q 009076 324 RRPSDYN 330 (544)
Q Consensus 324 ~~~~~~~ 330 (544)
.++....
T Consensus 70 ~~a~~~~ 76 (101)
T 2hvz_A 70 ELSTGMP 76 (101)
T ss_dssp EESSSCC
T ss_pred EEccCCC
Confidence 9876543
No 177
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=118.72 Aligned_cols=77 Identities=26% Similarity=0.403 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCC-ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCC-CeeCCeEEEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG-IKMGDKTLTVRR 440 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g-~~~~g~~i~v~~ 440 (544)
..++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4468999999999999999999999999 6666552 378999999999999999999999 999999999999
Q ss_pred cCCCCC
Q 009076 441 ANQGAN 446 (544)
Q Consensus 441 ~~~~~~ 446 (544)
+.....
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 976643
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=4.7e-15 Score=118.69 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCC-----CCcHHHHHHHHHhcCCceEEEEccCCCC-CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 363 GPDRIFVGGLPY-----YFTEAQIRELLESFGPLRGFDLVKDRET-GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 363 ~~~~l~v~nl~~-----~~~ee~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
++++|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|+|||+|.+.++|.+|+..|||..|+|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456899999963 2378999999999999999999988653 6889999999999999999999999999999999
Q ss_pred EEEEc
Q 009076 437 TVRRA 441 (544)
Q Consensus 437 ~v~~~ 441 (544)
.|.|+
T Consensus 87 ~v~~a 91 (105)
T 2pe8_A 87 KACFY 91 (105)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99998
No 179
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=118.20 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEE-EEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGF-DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..++|||+|||+.+++++|+++|+.||.|..| .|+.++.+ |.|||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34689999999999999999999999999999 58777543 44999999999999999999999999999999999
Q ss_pred CCC
Q 009076 442 NQG 444 (544)
Q Consensus 442 ~~~ 444 (544)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 766
No 180
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-16 Score=123.96 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=68.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHH--hhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCc----
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMA--AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI---- 314 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~--i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~---- 314 (544)
....+|||+|||+.+|+++|+++|++||. +..+. ++.+..++.++|||||+|.+.++|.+|+ .||+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~------i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIR------LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEE------CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEE------EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 34678999999999999999999999995 44443 3445567889999999999999999999 89886
Q ss_pred eeCCceeEEcCCC
Q 009076 315 IFEGAPVKVRRPS 327 (544)
Q Consensus 315 ~l~g~~l~v~~~~ 327 (544)
.|.|++|.|.++.
T Consensus 81 ~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 81 KIDGKTIGVDFAK 93 (95)
T ss_dssp EETTEEEEEEECC
T ss_pred eECCEEEEEEEcc
Confidence 5899999999875
No 181
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=3.8e-16 Score=126.62 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=70.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
+.++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~------i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVE------ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEE------EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 357899999999999999999999999987664 3445556889999999999999999999 899999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 79 ~V~~a~~ 85 (110)
T 3s8s_A 79 HAQLDIK 85 (110)
T ss_dssp EEEECST
T ss_pred EEEECCC
Confidence 9987653
No 182
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=4.6e-15 Score=122.06 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceE-EEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY-AFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRAN 442 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~ 442 (544)
.|||+||++.+|+++|+++|++||.|..|.|+... +|+ |||+|.+.++|..|+..|||..|.| +.|+|.|+.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 58899999999999999999999999999887642 677 9999999999999999999999988 999999996
Q ss_pred CCC
Q 009076 443 QGA 445 (544)
Q Consensus 443 ~~~ 445 (544)
...
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 553
No 183
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=124.70 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCc----eEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPL----RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
...+|||+|||+.+++++|+++|++||.| ..|.|+.+ .+|.++|||||+|.+.++|.+||.. |+..|+|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 34689999999999999999999999975 68999988 4899999999999999999999975 999999999999
Q ss_pred EEc
Q 009076 439 RRA 441 (544)
Q Consensus 439 ~~~ 441 (544)
..+
T Consensus 100 ~~a 102 (123)
T 2dha_A 100 FRS 102 (123)
T ss_dssp EEE
T ss_pred EEC
Confidence 987
No 184
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=117.37 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=65.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC--CceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~--~~~l~g~ 319 (544)
..++|||+|||+.+|+++|+++|++||. |.++.+...+|||||+|.+.++|..|+ .|+ +..|.|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr 82 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 82 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 4678999999999999999999999996 445555566999999999999999999 675 4789999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
+|.|.++....
T Consensus 83 ~l~V~~A~~~~ 93 (105)
T 1sjq_A 83 PIYIQFSNHKE 93 (105)
T ss_dssp ECCBCCCSSSS
T ss_pred EEEEEEcCCCC
Confidence 99999876543
No 185
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-14 Score=114.57 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhc--CCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESF--GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
...++|||+|||+.+++++|+++|+.| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345799999999999999999999999 889988875 5699999999999999999999999999999999
Q ss_pred EcCCCCC
Q 009076 440 RANQGAN 446 (544)
Q Consensus 440 ~~~~~~~ 446 (544)
|+.+...
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 186
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=8.8e-15 Score=119.13 Aligned_cols=73 Identities=25% Similarity=0.488 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 364 PDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 364 ~~~l~v~nl~~~-~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
.++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 368999999999 999999999999999999998 37899999999999999999999999999999999996
Q ss_pred CC
Q 009076 443 QG 444 (544)
Q Consensus 443 ~~ 444 (544)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 187
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=6.1e-15 Score=118.10 Aligned_cols=80 Identities=25% Similarity=0.466 Sum_probs=73.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|+.||.|.. . ++.+..++.++|||||+|.+.++|.+||.||+..|.|+.|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 88 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-L------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIK 88 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E------EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEE
Confidence 4678999999999999999999999999987 3 47788889999999999999999999999999999999999
Q ss_pred EcCCCCC
Q 009076 323 VRRPSDY 329 (544)
Q Consensus 323 v~~~~~~ 329 (544)
|.++...
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 9987643
No 188
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-16 Score=131.56 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceE--------EEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRG--------FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT 435 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~ 435 (544)
.++|||+|||..+++++|+++|+.||.|.. |.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 458999999999999999999999999998 899998888999999999999999999999999999999999
Q ss_pred EEEEEcCCCC
Q 009076 436 LTVRRANQGA 445 (544)
Q Consensus 436 i~v~~~~~~~ 445 (544)
|.|.|+..+.
T Consensus 87 l~V~~a~~~~ 96 (116)
T 2lcw_A 87 IKVSFATRRA 96 (116)
Confidence 9999996553
No 189
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=114.73 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|| .+++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34568999996 899999999999999999999953 4899999999999999999999999999999999999
Q ss_pred CCCCC
Q 009076 442 NQGAN 446 (544)
Q Consensus 442 ~~~~~ 446 (544)
.....
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76643
No 190
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=130.09 Aligned_cols=84 Identities=21% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEE--EccC---CCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFD--LVKD---RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~--i~~~---~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
.+.++|||+|||+.+++++|+++|+.||.|..+. ++.+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999998741 1111 2368889999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 009076 437 TVRRANQGA 445 (544)
Q Consensus 437 ~v~~~~~~~ 445 (544)
.|.|+....
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999996553
No 191
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=1.1e-15 Score=125.66 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=85.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|.++|+.||.|..+. -...+.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~---------i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR---------VGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE---------EECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---------EeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 467899999999999999999999999765432 1223667999999999999999999 799999999999
Q ss_pred EEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHHhcCC
Q 009076 322 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 390 (544)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ee~l~~~f~~~G~ 390 (544)
.|.++..... ..+++...++++|.++|++||.
T Consensus 78 ~v~~a~~~~~-------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRA-------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHH-------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChh-------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 9987542110 1567788899999999999985
No 192
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=6.2e-16 Score=130.20 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
...+|||+|||+++++++|+++|++|| |+.|.|+.++. |.++|||||+|.+.++|.+|| .||+..|+|+.|.|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 446899999999999999999999999 77999999965 999999999999999999999 899999999999999986
Q ss_pred CCC
Q 009076 443 QGA 445 (544)
Q Consensus 443 ~~~ 445 (544)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 554
No 193
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.57 E-value=1.8e-15 Score=124.35 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=71.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK------VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEE------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 467899999999999999999999999887654 3333346778899999999999999999 999999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999876543
No 194
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=3.1e-15 Score=124.74 Aligned_cols=85 Identities=22% Similarity=0.367 Sum_probs=73.0
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 318 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g 318 (544)
......++|||+|||..+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+.|++..|.|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 104 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRIT------ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG 104 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEE------EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC
Confidence 4455689999999999999999999999999886654 2333356788999999999999999999999999999
Q ss_pred ceeEEcCCCCC
Q 009076 319 APVKVRRPSDY 329 (544)
Q Consensus 319 ~~l~v~~~~~~ 329 (544)
+.|.|.++...
T Consensus 105 ~~l~V~~a~~~ 115 (124)
T 2jwn_A 105 RTIKVLPKRTN 115 (124)
T ss_dssp EECEEEESSCC
T ss_pred eEEEEEECCCC
Confidence 99999986543
No 195
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=8.8e-15 Score=120.02 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceE-EEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY-AFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRAN 442 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~ 442 (544)
.|||+||++.+++++|+++|++||.|..|.|+.. .|+ |||+|.+.++|..|+..|||..|.| +.|.|.|+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3679999999999999999999999999999653 376 9999999999999999999999977 699999997
Q ss_pred CCC
Q 009076 443 QGA 445 (544)
Q Consensus 443 ~~~ 445 (544)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 196
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=2.5e-15 Score=123.88 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCce--EEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLR--GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
....+|||+|||+.+++++|+++|+.| .|. .|.|+.++. |.++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 345689999999999999999999999 676 899999976 9999999999999999999996 57899999999999
Q ss_pred EcC
Q 009076 440 RAN 442 (544)
Q Consensus 440 ~~~ 442 (544)
++.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 873
No 197
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.9e-15 Score=118.69 Aligned_cols=75 Identities=15% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 363 GPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 363 ~~~~l~v~nl~~-~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 456899999998 99999999999999999999984 679999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
....
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 6553
No 198
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=6.1e-16 Score=120.97 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=65.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHH--HhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVM--AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
.+|||+|||+.+|+++|+++|++|| .|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~------i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEE------EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEE------EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 3699999999999999999999999 776554 3444457788999999999999999999 899999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 76 ~V~~~~~~ 83 (90)
T 3p5t_L 76 VVTPSNKL 83 (90)
T ss_dssp EECCC---
T ss_pred EEEECCCC
Confidence 99886543
No 199
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=3.5e-15 Score=119.76 Aligned_cols=77 Identities=27% Similarity=0.525 Sum_probs=73.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+. +|..|+|+.|.|.++...
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 589999999999999999999999999999999997 99999999999999999999997 999999999999998544
No 200
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=8.8e-15 Score=125.06 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=69.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC--eEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~i~v~~~~ 442 (544)
.+|||+||++.+++++|+++|++||.|..|.|... .++|||||+|.+.++|..|+..|||..|.| +.|+|.|+.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 36899999999999999999999999999999754 247899999999999999999999999955 999999997
Q ss_pred CCC
Q 009076 443 QGA 445 (544)
Q Consensus 443 ~~~ 445 (544)
...
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 201
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=1.3e-15 Score=125.94 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=68.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAK------VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEE------ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3568999999999999999999999999876554 2333345778999999999999999999 89999999999
Q ss_pred eEEcCC
Q 009076 321 VKVRRP 326 (544)
Q Consensus 321 l~v~~~ 326 (544)
|+|.++
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999864
No 202
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=2.1e-14 Score=111.49 Aligned_cols=84 Identities=48% Similarity=0.834 Sum_probs=72.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
...++|||+|||+.+|+++|+++|++||.+.++.. .++..|..+.+..++|||||+|.+.++|.+|+.||+..|.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~-~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhccccc-CCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 45789999999999999999999999976554321 23345888888889999999999999999999999999999999
Q ss_pred EEcCC
Q 009076 322 KVRRP 326 (544)
Q Consensus 322 ~v~~~ 326 (544)
.|.+|
T Consensus 83 ~V~rp 87 (87)
T 2hzc_A 83 KIRRP 87 (87)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99764
No 203
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-15 Score=115.30 Aligned_cols=78 Identities=27% Similarity=0.468 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
...+|||+|||+.+++++|+++|+.||.|..| +.++.+|. ||||+|.+.++|.+|+. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34589999999999999999999999999987 44444554 99999999999999998 99999999999999986
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
....
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5543
No 204
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=5.2e-15 Score=115.83 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=65.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCce--eCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII--FEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~--l~g~ 319 (544)
++++|||+|||+.+|+++|.++|++||. |.++.+.+.+|||||+|.+.++|.+|+ .|++.. |.|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGP------------ISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 4778999999999999999999999996 455555678999999999999999999 888764 7899
Q ss_pred eeEEcCCCCC
Q 009076 320 PVKVRRPSDY 329 (544)
Q Consensus 320 ~l~v~~~~~~ 329 (544)
+|.|.+++..
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999987643
No 205
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=118.79 Aligned_cols=82 Identities=16% Similarity=0.278 Sum_probs=72.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|..||.|..+. +.++..++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 367899999999999999999999999986654 3555568889999999999999999999 899999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999876543
No 206
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=2e-15 Score=113.62 Aligned_cols=75 Identities=17% Similarity=0.307 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEEcC
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 325 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v~~ 325 (544)
+|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|++|+.+++..|.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAM------LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEEC------CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 599999999999999999999999987765 33444467889999999999999999999999999999999986
Q ss_pred C
Q 009076 326 P 326 (544)
Q Consensus 326 ~ 326 (544)
+
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 4
No 207
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=9e-15 Score=113.73 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 443 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~ 443 (544)
.++|||+|||+.+++++|+++|++| .|..+.|. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3589999999999999999999999 99999885 3589999999999999999999999999999999999854
Q ss_pred C
Q 009076 444 G 444 (544)
Q Consensus 444 ~ 444 (544)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 208
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-15 Score=119.04 Aligned_cols=82 Identities=18% Similarity=0.354 Sum_probs=70.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGG-NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~-~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++|||+|||+.+|+++|+++|+.||.|..+ . ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPK------IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCE------ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46799999999999999999999999988665 3 2333356778999999999999999999 79999999999
Q ss_pred eEEcCCCCCC
Q 009076 321 VKVRRPSDYN 330 (544)
Q Consensus 321 l~v~~~~~~~ 330 (544)
|.|.++....
T Consensus 78 l~v~~a~~~~ 87 (96)
T 1x5t_A 78 ITVSYAFKKD 87 (96)
T ss_dssp CEEEESCCCC
T ss_pred EEEEEecccC
Confidence 9999876543
No 209
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.8e-15 Score=118.60 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEe---ecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~---~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+.. ++.++|||||+|.+.++|.+|+ .|++..|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCT------ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999999999886653 233322 4477899999999999999999 799999999
Q ss_pred ceeEEcCCCCCC
Q 009076 319 APVKVRRPSDYN 330 (544)
Q Consensus 319 ~~l~v~~~~~~~ 330 (544)
+.|.|.++....
T Consensus 78 ~~l~V~~a~~~~ 89 (98)
T 2cpf_A 78 HKLEVRISERAT 89 (98)
T ss_dssp EECEEECSSCSS
T ss_pred eEEEEEEccCCC
Confidence 999999876543
No 210
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-15 Score=121.34 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=68.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|.++|++||.|..+. ++.+.. +.++|||||+|.+.++|.+|+.+++..|.|+.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~------i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~ 82 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ------MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL 82 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEE------EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEE------EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEE
Confidence 467899999999999999999999999887654 222323 7889999999999999999999999999999999
Q ss_pred EcCCCC
Q 009076 323 VRRPSD 328 (544)
Q Consensus 323 v~~~~~ 328 (544)
|.+..+
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 987544
No 211
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=1.8e-15 Score=117.03 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=68.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEE------EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999999999999876554 2333355678999999999999999999 999999999999
Q ss_pred EEcCC
Q 009076 322 KVRRP 326 (544)
Q Consensus 322 ~v~~~ 326 (544)
.|.++
T Consensus 80 ~v~~a 84 (85)
T 3mdf_A 80 RVNLA 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99875
No 212
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.3e-15 Score=119.22 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=70.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELH------YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999999999999876553 2223235778899999999999999999 999999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 81 ~V~~a~~~~ 89 (99)
T 1whw_A 81 HVLPSTIKK 89 (99)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCCCc
Confidence 999876544
No 213
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=2.9e-15 Score=118.73 Aligned_cols=81 Identities=25% Similarity=0.419 Sum_probs=70.0
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.++|||+|||..+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLK------MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 57899999999999999999999999876554 2233345678999999999999999999 8999999999999
Q ss_pred EcCCCCCC
Q 009076 323 VRRPSDYN 330 (544)
Q Consensus 323 v~~~~~~~ 330 (544)
|.++....
T Consensus 76 V~~a~~~~ 83 (96)
T 2x1f_A 76 CGYSSNSD 83 (96)
T ss_dssp EEECSCSS
T ss_pred EEEcCCCC
Confidence 99876554
No 214
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=2.1e-15 Score=116.05 Aligned_cols=78 Identities=19% Similarity=0.466 Sum_probs=67.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
.+|||+|||+.+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGH------VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 5799999999999999999999999876553 2333345677999999999999999999 79999999999999
Q ss_pred cCCCC
Q 009076 324 RRPSD 328 (544)
Q Consensus 324 ~~~~~ 328 (544)
.++..
T Consensus 76 ~~a~~ 80 (83)
T 3md1_A 76 NWAAK 80 (83)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 98754
No 215
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=2.8e-15 Score=129.56 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=69.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHH--HhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVM--AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
..++|||+|||+.+|+++|+++|+.|| .|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~------i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELK------FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 568999999999999999999999999 776654 3444457888999999999999999999 8999999999
Q ss_pred eeEEcCCCC
Q 009076 320 PVKVRRPSD 328 (544)
Q Consensus 320 ~l~v~~~~~ 328 (544)
.|.|.++..
T Consensus 128 ~l~V~~a~~ 136 (156)
T 3n9u_C 128 KVDVRPATR 136 (156)
T ss_dssp ECEEEECCH
T ss_pred EeEEEEcCC
Confidence 999987653
No 216
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=121.22 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||..+|+++|+++|+.||.|..+. +....++.++|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL-------LIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEE-------EECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 467899999999999999999999999876653 222236778999999999999999999 899999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 999876543
No 217
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=2.5e-15 Score=121.91 Aligned_cols=85 Identities=11% Similarity=0.210 Sum_probs=67.3
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 318 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g 318 (544)
......++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+...+..|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~------i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g 93 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 93 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEE------ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEE------EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCC
Confidence 3445678999999999999999999999999876654 2333345778999999999999999999555799999
Q ss_pred ceeEEcCCCCC
Q 009076 319 APVKVRRPSDY 329 (544)
Q Consensus 319 ~~l~v~~~~~~ 329 (544)
+.|.|.++...
T Consensus 94 ~~l~V~~a~~~ 104 (109)
T 2rs2_A 94 KTIDPKVAFPR 104 (109)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEEccCC
Confidence 99999886543
No 218
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=1.7e-15 Score=117.71 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=67.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||..+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 467899999999999999999999999876553 2223245677899999999999999999 899999999999
Q ss_pred EEcCCC
Q 009076 322 KVRRPS 327 (544)
Q Consensus 322 ~v~~~~ 327 (544)
.|.++.
T Consensus 79 ~v~~a~ 84 (87)
T 3bs9_A 79 RTNWAT 84 (87)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 998764
No 219
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.3e-15 Score=118.26 Aligned_cols=79 Identities=24% Similarity=0.324 Sum_probs=68.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEE------EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 467899999999999999999999999876543 2333344677899999999999999999 799999999999
Q ss_pred EEcCCC
Q 009076 322 KVRRPS 327 (544)
Q Consensus 322 ~v~~~~ 327 (544)
.|.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999865
No 220
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.7e-15 Score=117.96 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||..+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIV------LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 467899999999999999999999999876553 2333345778999999999999999999 799999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999876543
No 221
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.5e-15 Score=120.50 Aligned_cols=82 Identities=28% Similarity=0.425 Sum_probs=70.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTH------MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 467899999999999999999999999876654 2333346778999999999999999999 799999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 999876543
No 222
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=1.9e-15 Score=117.48 Aligned_cols=80 Identities=11% Similarity=0.339 Sum_probs=68.3
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCce
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 320 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~ 320 (544)
....++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+.+++..|.|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT------IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 34578999999999999999999999999876654 233334577899999999999999999988999999999
Q ss_pred eEEcCC
Q 009076 321 VKVRRP 326 (544)
Q Consensus 321 l~v~~~ 326 (544)
|.|.++
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999753
No 223
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=121.94 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=71.4
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
....++|||+|||..+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVK------IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEE------EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34578999999999999999999999999876654 2333345667999999999999999999 7999999999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
.|.|.++....
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 224
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=3.6e-15 Score=116.45 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=70.4
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
...++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+.|++..|.|+.|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT------ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEE------EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 3568999999999999999999999999876653 2333346778999999999999999999999999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9998654
No 225
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4e-15 Score=119.46 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=71.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEE------CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999999999999887654 2334456778999999999999999999 899999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999876543
No 226
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.8e-15 Score=118.98 Aligned_cols=81 Identities=26% Similarity=0.449 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+. ++.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVV------VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEE------ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 467899999999999999999999999876553 2233345678999999999999999999 999999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 99986543
No 227
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2.2e-14 Score=114.86 Aligned_cols=79 Identities=11% Similarity=0.249 Sum_probs=69.5
Q ss_pred CCCEEEEcCC--CCCC--------cHHHHHHHHHhcCCceEEEEccCCCC--CCcceEEEEEEcChHHHHHHHHHhCCCe
Q 009076 363 GPDRIFVGGL--PYYF--------TEAQIRELLESFGPLRGFDLVKDRET--GNSKGYAFCVYQDLSVTDIACAALNGIK 430 (544)
Q Consensus 363 ~~~~l~v~nl--~~~~--------~ee~l~~~f~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~e~A~~A~~~l~g~~ 430 (544)
++++|+|.|| |..+ .+++|+++|++||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999999 3333 34799999999999999999988654 3678999999999999999999999999
Q ss_pred eCCeEEEEEEc
Q 009076 431 MGDKTLTVRRA 441 (544)
Q Consensus 431 ~~g~~i~v~~~ 441 (544)
|+|+.|.|.|+
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999998
No 228
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=6.4e-15 Score=121.09 Aligned_cols=84 Identities=19% Similarity=0.342 Sum_probs=71.2
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|++..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3477999999999999999999999999876553 2222235677899999999999999999 89999999999
Q ss_pred eEEcCCCCCCc
Q 009076 321 VKVRRPSDYNP 331 (544)
Q Consensus 321 l~v~~~~~~~~ 331 (544)
|.|.++.....
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 99998765543
No 229
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=1.2e-14 Score=117.34 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=65.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++|||+|||+.+|+++|+++|++|| .|..+ .+....++|||||+|.+.++|++|+ .|||..|.|+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v----------~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFS----------SVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEE----------ECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEE----------EEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 467899999999999999999999999 66432 2223468999999999999999999 89999999999
Q ss_pred eEEcCCC
Q 009076 321 VKVRRPS 327 (544)
Q Consensus 321 l~v~~~~ 327 (544)
|.|.++.
T Consensus 97 i~V~~a~ 103 (111)
T 2jvr_A 97 ITVERDD 103 (111)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9998754
No 230
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=7.9e-15 Score=120.19 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeE-----EEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT-----LTV 438 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~-----i~v 438 (544)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|+. |.|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 468999999999999999999999999999999765 89999999999999999999999999998 666
Q ss_pred EEcCC
Q 009076 439 RRANQ 443 (544)
Q Consensus 439 ~~~~~ 443 (544)
..+..
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 66643
No 231
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-15 Score=122.11 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=69.5
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ------LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEE------EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3467899999999999999999999999876553 2333345677899999999999999999 89999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|.|.++..
T Consensus 98 l~V~~a~~ 105 (108)
T 2jrs_A 98 MKVGHVTE 105 (108)
T ss_dssp CEEECSCS
T ss_pred EEEEEccc
Confidence 99998654
No 232
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-15 Score=118.75 Aligned_cols=82 Identities=16% Similarity=0.355 Sum_probs=69.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||..+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+.|++..|.|+.|.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~ 82 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVV------MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 82 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEE------ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999999999876543 22222356789999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 009076 323 VRRPSDYN 330 (544)
Q Consensus 323 v~~~~~~~ 330 (544)
|.++....
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99876543
No 233
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=1.5e-15 Score=121.16 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=70.1
Q ss_pred ccceEEEcCCCC------CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009076 243 HARRVYVGGLPP------TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 315 (544)
Q Consensus 243 ~~~~l~V~nLp~------~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~ 315 (544)
..++|||+|||. .+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNME------FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 367899999999 999999999999999887665 3455556889999999999999999999 899999
Q ss_pred eCC-ceeEEcCCC
Q 009076 316 FEG-APVKVRRPS 327 (544)
Q Consensus 316 l~g-~~l~v~~~~ 327 (544)
|.| +.|.|.++.
T Consensus 79 ~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 79 LDLKHRLFLYTMK 91 (100)
T ss_dssp SSSSCBCEEEESH
T ss_pred cCCCeEEEEEECc
Confidence 999 999998764
No 234
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-15 Score=118.38 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=69.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAI-GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~-~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++|||+|||+.+++++|+++|++||.|. .+. ++.+..++.++|||||+|.+.++|++|+ .||+..|.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVK------IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEE------EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE------EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 467999999999999999999999999876 543 3333446778899999999999999999 79999999999
Q ss_pred ----eEEcCCCC
Q 009076 321 ----VKVRRPSD 328 (544)
Q Consensus 321 ----l~v~~~~~ 328 (544)
|+|.++..
T Consensus 82 ~~~~l~v~~a~~ 93 (99)
T 2div_A 82 PAKRFKLNYATY 93 (99)
T ss_dssp SCEECCEEETTC
T ss_pred cceeEEEeecCC
Confidence 99988654
No 235
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.3e-15 Score=119.32 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC------Cce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD------GII 315 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~------~~~ 315 (544)
..++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|+ +..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR------VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 467899999999999999999999999876654 3334445778999999999999999999 899 999
Q ss_pred eCCceeEEcCCCCCC
Q 009076 316 FEGAPVKVRRPSDYN 330 (544)
Q Consensus 316 l~g~~l~v~~~~~~~ 330 (544)
|.|+.|.|.++....
T Consensus 88 ~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRD 102 (111)
T ss_dssp SSSCEEEEECCCCCC
T ss_pred EcCEEEEEEECCCCc
Confidence 999999999876543
No 236
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.3e-14 Score=114.72 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=66.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||..+++++|+++|+.||.| ..+.+..++|||||+|.+.++|..|+ .||+..|.|+.|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i------------~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFI------------LDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCC------------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCE------------EEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 46899999999999999999999999964 44445588999999999999999999 999999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 9988653
No 237
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=5.8e-15 Score=116.79 Aligned_cols=78 Identities=22% Similarity=0.214 Sum_probs=69.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.++|||+|||+.+|+++|+++|.+||.|..+. ++.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV------CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCC------EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceE------EEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 57899999999999999999999999887654 4555566788999999999999999999 7999999999999
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|.++.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 98754
No 238
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2.1e-14 Score=111.57 Aligned_cols=70 Identities=29% Similarity=0.620 Sum_probs=65.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhc----C-------CceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESF----G-------PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 432 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 432 (544)
.++|||+|||+.+++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 3589999999999999999999999 8 8999999876 799999999999999999 99999999
Q ss_pred CeEEEEEE
Q 009076 433 DKTLTVRR 440 (544)
Q Consensus 433 g~~i~v~~ 440 (544)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 239
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=114.45 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=67.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|..||.|. +.+.++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-----------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-----------LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-----------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-----------EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999999999999762 23446789999999999999999999 999999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 87 ~V~~a~~~ 94 (97)
T 2e5j_A 87 RVALARQQ 94 (97)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99986543
No 240
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=1.1e-14 Score=117.65 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=70.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee---CC
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF---EG 318 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l---~g 318 (544)
..++|||+|||..+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..+ .|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT------VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEE------CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 467899999999999999999999999887654 2333446778999999999999999999 8999887 89
Q ss_pred ceeEEcCCCCCC
Q 009076 319 APVKVRRPSDYN 330 (544)
Q Consensus 319 ~~l~v~~~~~~~ 330 (544)
+.|.|.++....
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999876543
No 241
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-15 Score=120.07 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=70.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVY------IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 467899999999999999999999999876554 2333345778999999999999999999 799999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dnm_A 86 RVQVARYG 93 (103)
T ss_dssp EEEECSSC
T ss_pred EEEECCcC
Confidence 99987654
No 242
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-15 Score=119.77 Aligned_cols=77 Identities=27% Similarity=0.305 Sum_probs=66.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhc--------CCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCc
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIG--------GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI 314 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--------~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~ 314 (544)
.++|||+|||..+|+++|+++|+.||.|.. +. ++.+..++.++|||||+|.+.++|.+|+ .|||.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~------i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMIN------LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEE------EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEE------EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 578999999999999999999999998765 32 2222245677999999999999999999 89999
Q ss_pred eeCCceeEEcCC
Q 009076 315 IFEGAPVKVRRP 326 (544)
Q Consensus 315 ~l~g~~l~v~~~ 326 (544)
.|.|+.|.|.++
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 999999999875
No 243
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=5.7e-15 Score=116.85 Aligned_cols=79 Identities=29% Similarity=0.421 Sum_probs=67.9
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+++++|+++|++||.|..+. +.....+.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVT-------ICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEE-------EEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE-------EEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 4568999999999999999999999999876553 222223667899999999999999999 79999999999
Q ss_pred eEEcCCC
Q 009076 321 VKVRRPS 327 (544)
Q Consensus 321 l~v~~~~ 327 (544)
|.|.++.
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998864
No 244
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3.8e-14 Score=110.16 Aligned_cols=74 Identities=18% Similarity=0.347 Sum_probs=62.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCe--eCCeEEEEE
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK--MGDKTLTVR 439 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~--~~g~~i~v~ 439 (544)
.++.+|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|. .|+|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 34569999999999999999999999999999999875 5899999999999997 356655 469999999
Q ss_pred EcCCC
Q 009076 440 RANQG 444 (544)
Q Consensus 440 ~~~~~ 444 (544)
++.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 99544
No 245
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=6.3e-15 Score=114.81 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=66.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++|||+|||+.+|+++|.++|++||.|..+. ++.+..++. ++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMID------MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 357899999999999999999999999876543 222222333 8999999999999999999 79999999999
Q ss_pred eEEcCCC
Q 009076 321 VKVRRPS 327 (544)
Q Consensus 321 l~v~~~~ 327 (544)
|.|.++.
T Consensus 77 l~v~~a~ 83 (88)
T 4a8x_A 77 ITATAVL 83 (88)
T ss_dssp CEEEEEC
T ss_pred EEEEECC
Confidence 9998754
No 246
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=7.5e-15 Score=116.89 Aligned_cols=78 Identities=21% Similarity=0.160 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~ 322 (544)
.++|||+|||+.+++++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|++|+ .||+..|.|+.|.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV------CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC------EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceE------EEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 56899999999999999999999999987654 4555667788999999999999999999 9999999999999
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|.++.
T Consensus 89 V~~a~ 93 (98)
T 2cqp_A 89 LVLGS 93 (98)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 98764
No 247
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-15 Score=120.88 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=68.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH------LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEE------EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 467899999999999999999999999876543 2333344677999999999999999999 899999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9988643
No 248
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=5.7e-15 Score=111.18 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEEcC
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 325 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v~~ 325 (544)
+|||+|||+.+|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+.+++..|.|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIE------LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEEC------CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 599999999999999999999999887665 34444567889999999999999999997799999999999875
No 249
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7e-15 Score=120.42 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=70.7
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCC--CCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG--PGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~--~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
...++|||+|||+.+|+++|+++|+.||.|..+.... ...++.+..++.++|||||+|.+.++|.+|| .||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3578999999999999999999999999886210000 0012333356778999999999999999999 799999999
Q ss_pred ceeEEcCCCCCC
Q 009076 319 APVKVRRPSDYN 330 (544)
Q Consensus 319 ~~l~v~~~~~~~ 330 (544)
+.|.|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999876543
No 250
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.3e-15 Score=117.32 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=67.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVT------IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEE------ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 367899999999999999999999999876543 2223334678999999999999999999 899999999999
Q ss_pred EEcCC
Q 009076 322 KVRRP 326 (544)
Q Consensus 322 ~v~~~ 326 (544)
.|.++
T Consensus 89 ~v~~a 93 (94)
T 2e5h_A 89 KASIA 93 (94)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99875
No 251
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-13 Score=112.27 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=70.0
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
......++|||+|||..+|+++|+++|+.||. |..+.+...+|||||+|.+.++|.+|+ .|++..|.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ------------IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34556789999999999999999999999996 455555566999999999999999999 99999999
Q ss_pred CceeEEcCCCCCC
Q 009076 318 GAPVKVRRPSDYN 330 (544)
Q Consensus 318 g~~l~v~~~~~~~ 330 (544)
|+.|.|.++....
T Consensus 88 g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 88 GHVVKCYWGKESP 100 (109)
T ss_dssp TEECEEECCCCCC
T ss_pred CcEEEEEecCCCC
Confidence 9999999876543
No 252
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=8.5e-15 Score=118.67 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEE-EeecCCCcEEEEEecCHHHHHHHH-Hc-CCceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVN-VYINHEKKFAFVEMRSVEEASNAM-AL-DGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~-~~~~~~kg~afV~f~~~~~A~~Al-~l-~~~~l~g~ 319 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+ ...+.++|||||+|.+.++|.+|+ .| |+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVR------LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEE------EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 467899999999999999999999999876654 2222 236678999999999999999999 89 99999999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
.|.|.++....
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 99999876543
No 253
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-15 Score=120.15 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=70.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIY------LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 467899999999999999999999999876653 2333346678899999999999999999 799999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 88 ~v~~a~~~ 95 (103)
T 2cq0_A 88 NVEWAKPS 95 (103)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99987644
No 254
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-15 Score=122.41 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=69.9
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCce
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 320 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~ 320 (544)
....++|||+|||..+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+||.||+..|.|+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 95 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR------IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP 95 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEE------EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence 45678999999999999999999999999876554 233334577899999999999999999999999999999
Q ss_pred eEEcCCC
Q 009076 321 VKVRRPS 327 (544)
Q Consensus 321 l~v~~~~ 327 (544)
|.|.++.
T Consensus 96 l~V~~a~ 102 (114)
T 2cq4_A 96 IIVQASQ 102 (114)
T ss_dssp EEEEEHH
T ss_pred EEEEecC
Confidence 9998754
No 255
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.8e-15 Score=117.22 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLR-------LVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE-------EEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 467899999999999999999999999876553 222225677899999999999999999 999999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 89 ~v~~a~~~ 96 (100)
T 2do4_A 89 KVAISNSG 96 (100)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99986543
No 256
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.9e-14 Score=113.81 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=67.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+. ++. ....++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCK------MIT--EHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE------EEC--CCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEE------EEe--cCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 467999999999999999999999999876543 111 12336899999999999999999 799999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 86 ~V~~a~~~ 93 (103)
T 2cqi_A 86 KVNWATTP 93 (103)
T ss_dssp EEEECCCT
T ss_pred EEEECCCC
Confidence 99987653
No 257
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.5e-15 Score=118.42 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=69.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. +... .+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAK-------VMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEE-------EEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 467899999999999999999999999876653 2222 6678999999999999999999 899999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 999876544
No 258
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=117.01 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=70.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHH-HHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCce-eCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQ-VMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII-FEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~-~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~-l~g~ 319 (544)
..++|||+|||+.+|+++|+++|.. ||.|..+. ++.+. ++.++|||||+|.+.++|.+|+ .|++.. |.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK------VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE------EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE------EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 4678999999999999999999999 99887654 23333 6778999999999999999999 899999 9999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
.|.|.++....
T Consensus 81 ~l~v~~a~~~~ 91 (104)
T 2dhg_A 81 PVRLSVAIPKA 91 (104)
T ss_dssp CCCCCBCCCCC
T ss_pred eEEEEEccCCC
Confidence 99999875443
No 259
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=116.39 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCC---CCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET---GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+||..|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 346899999999999999999999999999 888887766 7999999999999999999999984 3667777666
Q ss_pred Ec
Q 009076 440 RA 441 (544)
Q Consensus 440 ~~ 441 (544)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 260
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=114.00 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=65.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCC--ceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG--IIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~--~~l~g~ 319 (544)
+.++|||+|||+.+++++|+++|++||.| ..+.+...+|||||+|.+.++|.+|+ .|++ ..|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V------------~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTI------------CYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCE------------EEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCE------------EEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 36789999999999999999999999964 44555567999999999999999999 6765 559999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
+|.|.++....
T Consensus 82 ~l~V~~a~~~~ 92 (104)
T 1wex_A 82 QAFFNYSTSKR 92 (104)
T ss_dssp BCEEEECSSSS
T ss_pred EEEEEEccCcc
Confidence 99999876543
No 261
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=119.72 Aligned_cols=78 Identities=14% Similarity=0.211 Sum_probs=67.0
Q ss_pred cceEEEcCCCCCCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 244 ARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
.++|||+|||+.+++++|+ ++|++||.|..+. ...++.++|||||+|.+.++|..|+ .|||..|.|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~---------i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIV---------VDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEE---------ECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEE---------eccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 6789999999999999876 7999999875432 1235678999999999999999999 999999999
Q ss_pred ceeEEcCCCCCC
Q 009076 319 APVKVRRPSDYN 330 (544)
Q Consensus 319 ~~l~v~~~~~~~ 330 (544)
++|.|.++....
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999876544
No 262
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=116.45 Aligned_cols=78 Identities=27% Similarity=0.417 Sum_probs=67.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+. -...+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~---------i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID---------LKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---------ECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---------EEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 467899999999999999999999999865432 1223457899999999999999999 999999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 92 ~V~~a~~~ 99 (109)
T 1x4a_A 92 RVEFPRSG 99 (109)
T ss_dssp EEECCCCC
T ss_pred EEEEcccC
Confidence 99987654
No 263
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.51 E-value=5.9e-15 Score=123.37 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=69.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEE------EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 467899999999999999999999999876543 2333345778999999999999999999 799999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99987543
No 264
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1e-14 Score=119.98 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=70.9
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCce
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 320 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~ 320 (544)
....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||.+++..|.|+.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV------VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEE------EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 44578999999999999999999999999886653 233334577899999999999999999955999999999
Q ss_pred eEEcCCCCCC
Q 009076 321 VKVRRPSDYN 330 (544)
Q Consensus 321 l~v~~~~~~~ 330 (544)
|.|.++....
T Consensus 98 l~V~~a~~~~ 107 (116)
T 1x4b_A 98 VEPKRAVARE 107 (116)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCc
Confidence 9999876543
No 265
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=112.68 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=65.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-Hc--CCceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL--DGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l--~~~~l~g~ 319 (544)
+.++|||+|||+.+|+++|+++|++||.| ..+.+...+|||||+|.+.++|..|+ .| ++..|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v------------~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKV------------TNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCE------------EEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE------------EEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 36789999999999999999999999964 45555566999999999999999999 65 57889999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
+|.|.++....
T Consensus 82 ~l~V~~a~~~~ 92 (101)
T 2cq1_A 82 PIYIQYSNHKE 92 (101)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCccc
Confidence 99999876543
No 266
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=2e-15 Score=120.57 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=67.5
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEE-eecCCCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV-YINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~-~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
....++|||+|||..+++++|+++|+.|| |..+. ++.+. ..+.++|||||+|.+.++|.+|+.|+|..|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~------i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR------LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEE------CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE------EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence 34578999999999999999999999999 87654 22222 367789999999999999999999999999999
Q ss_pred eeEEcCCCC
Q 009076 320 PVKVRRPSD 328 (544)
Q Consensus 320 ~l~v~~~~~ 328 (544)
.|.|.++..
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 999988654
No 267
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.7e-15 Score=118.62 Aligned_cols=83 Identities=29% Similarity=0.450 Sum_probs=71.1
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR------LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEE------EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4568999999999999999999999999876553 2333345677999999999999999999 89999999999
Q ss_pred eEEcCCCCCC
Q 009076 321 VKVRRPSDYN 330 (544)
Q Consensus 321 l~v~~~~~~~ 330 (544)
|.|.++....
T Consensus 80 l~v~~a~~~~ 89 (104)
T 1p1t_A 80 LRVDNAASEK 89 (104)
T ss_dssp BEEEETTCTT
T ss_pred EEEEeCCCcc
Confidence 9999876554
No 268
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=9.4e-15 Score=115.73 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=65.5
Q ss_pred ccceEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCC--ceeCC
Q 009076 243 HARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG--IIFEG 318 (544)
Q Consensus 243 ~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~--~~l~g 318 (544)
+.++|||+|||+ .+|+++|+++|++||. |.++.+...+|||||+|.+.++|..|+ .|++ ..|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGV------------ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSC------------EEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 467899999999 9999999999999996 555566677899999999999999999 7775 56999
Q ss_pred ceeEEcCCCCC
Q 009076 319 APVKVRRPSDY 329 (544)
Q Consensus 319 ~~l~v~~~~~~ 329 (544)
++|.|.++...
T Consensus 82 r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 KPVRVHLSQKY 92 (102)
T ss_dssp EECEEEEECCC
T ss_pred cEEEEEECCCC
Confidence 99999987643
No 269
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=6.7e-15 Score=119.90 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||..+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+.|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH------LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 467899999999999999999999999876554 2233345678999999999999999999 799999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 99 ~V~~a~~ 105 (110)
T 1oo0_B 99 QVDWCFV 105 (110)
T ss_dssp EEEESEE
T ss_pred EEEEccc
Confidence 9988643
No 270
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=5e-14 Score=116.21 Aligned_cols=76 Identities=24% Similarity=0.396 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 362 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 362 ~~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
...++|||+|| .+++++|+++|+.||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34568999996 699999999999999999999963 4899999999999999999999999999999999999
Q ss_pred CCCC
Q 009076 442 NQGA 445 (544)
Q Consensus 442 ~~~~ 445 (544)
....
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6653
No 271
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.50 E-value=7.5e-15 Score=118.52 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=69.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC---
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--- 318 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g--- 318 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT-------VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 478999999999999999999999999887654 333335677999999999999999999 899999998
Q ss_pred ceeEEcCCCCCC
Q 009076 319 APVKVRRPSDYN 330 (544)
Q Consensus 319 ~~l~v~~~~~~~ 330 (544)
+.|.|.++....
T Consensus 87 ~~l~V~~a~~~~ 98 (105)
T 2dnh_A 87 SSLVVKFADTDK 98 (105)
T ss_dssp SCCEEEESCSSC
T ss_pred ccEEEEECccCc
Confidence 999999876543
No 272
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=116.47 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=64.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC--CceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~--~~~l~g~ 319 (544)
+.++|||+|||+.+|+++|+++|++||.|.. +.+...+|||||+|.+.++|.+|+ .++ +..|.|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~------------v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTN------------LLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCE------------EEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE------------EEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 4678999999999999999999999997543 334445899999999999999999 776 4689999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
+|.|.++....
T Consensus 98 ~l~V~~a~~k~ 108 (119)
T 2ad9_A 98 PIYIQFSNHKE 108 (119)
T ss_dssp CCEEEECSSSS
T ss_pred EEEEEEccCCC
Confidence 99999876543
No 273
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.50 E-value=7.9e-15 Score=123.36 Aligned_cols=82 Identities=13% Similarity=0.282 Sum_probs=71.5
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCc----
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIG--GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI---- 314 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~---- 314 (544)
...++|||+|||+.+|+++|+++|++||.|.. +. ++.+..++.++|||||+|.+. +|.+|+ .||+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~------i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVR------VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEE------CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEE------EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34678999999999999999999999999854 43 455556888999999999999 999999 99999
Q ss_pred eeCCceeEEcCCCCCC
Q 009076 315 IFEGAPVKVRRPSDYN 330 (544)
Q Consensus 315 ~l~g~~l~v~~~~~~~ 330 (544)
.|.|+.|.|.++....
T Consensus 94 ~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSK 109 (131)
T ss_dssp CGGGCCCCCEECCCSC
T ss_pred cCCCEEEEEEECCCCC
Confidence 9999999999876543
No 274
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=117.88 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=69.0
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|++|| .+++ .|.|+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAV------VITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEE------ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3468999999999999999999999999876654 2333345778999999999999999999 7887 899999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|.|.++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999987643
No 275
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.5e-15 Score=118.82 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=67.9
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
....++|||+|||..+|+++|+++|++||.|..+.+ +. ..+.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i------~~--~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI------IF--NERGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEE------CC--BTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEE------EE--CCCCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 345789999999999999999999999998766431 11 12347999999999999999999 7999999999
Q ss_pred eeEEcCCCC
Q 009076 320 PVKVRRPSD 328 (544)
Q Consensus 320 ~l~v~~~~~ 328 (544)
.|.|.++..
T Consensus 98 ~l~V~~a~~ 106 (109)
T 2err_A 98 KIEVNNATA 106 (109)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999988653
No 276
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-15 Score=117.43 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTK------AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEE------EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 467899999999999999999999999876653 2333345778999999999999999999 899999999999
Q ss_pred EEcCCC
Q 009076 322 KVRRPS 327 (544)
Q Consensus 322 ~v~~~~ 327 (544)
++.++.
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 998753
No 277
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=115.90 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=68.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHH-hhcCCCCCCCCce-EEEeecCCCcEEEEEecCHHHHHHHH-HcC--CceeC
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMA-AIGGNTAGPGDAV-VNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFE 317 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~~~~~~~~~~v-~~~~~~~~kg~afV~f~~~~~A~~Al-~l~--~~~l~ 317 (544)
..++|||+|||+.+|+++|+++|..||. |..+. ++ .+..++.++|||||+|.+.++|..|+ .|+ +..|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~------i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVI------VYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEE------CCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEE------EEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 4678999999999999999999999997 65543 11 23334578999999999999999999 785 58999
Q ss_pred CceeEEcCCCCCC
Q 009076 318 GAPVKVRRPSDYN 330 (544)
Q Consensus 318 g~~l~v~~~~~~~ 330 (544)
|+.|.|.++....
T Consensus 81 g~~l~V~~a~~~~ 93 (109)
T 2dis_A 81 GHQIAVDWAEPEI 93 (109)
T ss_dssp TBCCEEEESCSSC
T ss_pred CCeEEEEEcCCCC
Confidence 9999999876543
No 278
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.50 E-value=9.5e-15 Score=118.35 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=67.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|..||.|..+. +.....+.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAA-------VHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE-------EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 367899999999999999999999999876654 222236678999999999999999999 799999999999
Q ss_pred EEcCCC
Q 009076 322 KVRRPS 327 (544)
Q Consensus 322 ~v~~~~ 327 (544)
.|.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998753
No 279
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=1.3e-14 Score=114.00 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=68.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||..+++++|+++|++||.|..+. +. ...+.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~-------i~-~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYAD-------IK-MENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEE-------EE-ESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EE-ccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999999999999876643 22 236678999999999999999999 899999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 79 ~v~~a~~~ 86 (92)
T 2dgv_A 79 DVRIDRNA 86 (92)
T ss_dssp CCEECSCC
T ss_pred EEEEcCCC
Confidence 99986543
No 280
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=7.7e-15 Score=112.20 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=63.0
Q ss_pred cceEEEcCCCCCC------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009076 244 ARRVYVGGLPPTA------NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 316 (544)
Q Consensus 244 ~~~l~V~nLp~~~------te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l 316 (544)
.++|||+|||..+ |+++|+++|++||.|..+. +. ..++.++|||||+|.+.++|.+|+ .|||..|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~-------i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF-------YP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEE-------CC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEE-------ec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 3689999999999 7899999999999876653 22 346778999999999999999999 8999999
Q ss_pred CCc-eeEE
Q 009076 317 EGA-PVKV 323 (544)
Q Consensus 317 ~g~-~l~v 323 (544)
.|+ +|+|
T Consensus 73 ~g~~~l~V 80 (81)
T 2krb_A 73 DKQHTFRV 80 (81)
T ss_dssp SSSSCCCC
T ss_pred CCceeEEe
Confidence 999 8876
No 281
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.1e-14 Score=113.64 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=64.0
Q ss_pred ccceEEEcCCCCCCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 243 HARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
..++|||+|||+.+++++|+ ++|++||.|..+. ++.+. ..+|||||+|.+.++|.+|+ .|||..|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~------i~~~~---~~rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVE------LSPHT---DYQLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEE------ECSCC---STTCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEE------EEeCC---CCCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35689999999999999999 9999999765432 11111 11899999999999999999 89999999
Q ss_pred CceeEEcCCCC
Q 009076 318 GAPVKVRRPSD 328 (544)
Q Consensus 318 g~~l~v~~~~~ 328 (544)
|+.|.|.++..
T Consensus 79 gr~l~V~~a~~ 89 (96)
T 2dgx_A 79 SKKILVSLATG 89 (96)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEEcCC
Confidence 99999998654
No 282
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.5e-15 Score=122.66 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=70.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+||.||+..|.|+.|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~------~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 97 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI------YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 97 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC------EEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceE------EEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 457899999999999999999999999887643 45566678889999999999999999999999999999999
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|.++.
T Consensus 98 V~~a~ 102 (124)
T 1wel_A 98 VHPIT 102 (124)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 98754
No 283
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=117.00 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=69.1
Q ss_pred ccceEEEcCCCCCC------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009076 243 HARRVYVGGLPPTA------NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 315 (544)
Q Consensus 243 ~~~~l~V~nLp~~~------te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~ 315 (544)
..++|||+|||+.+ |+++|+++|++||.|..+. +. ..++.++|||||+|.+.++|.+|+ .|||..
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~-------i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF-------YP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEE-------CC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEE-------ee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 36789999999999 8899999999999887654 22 356788999999999999999999 899999
Q ss_pred eCCc-eeEEcCCCCC
Q 009076 316 FEGA-PVKVRRPSDY 329 (544)
Q Consensus 316 l~g~-~l~v~~~~~~ 329 (544)
|.|+ .|.|.++.+.
T Consensus 86 ~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDF 100 (105)
T ss_dssp CSTTCEEEEECSCCC
T ss_pred cCCCceEEEEEcchH
Confidence 9999 9999987654
No 284
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.4e-14 Score=116.45 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=69.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|+.|| |..+. ++.+..++.++|||||+|.+.++|.+||.||+..|.|+.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 86 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVR------LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLR 86 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEE------EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEE
Confidence 367899999999999999999999996 66554 33333457789999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 009076 323 VRRPSDYN 330 (544)
Q Consensus 323 v~~~~~~~ 330 (544)
|.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99876543
No 285
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=6e-14 Score=114.42 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCC--C---CcHHHHHHHHHhcCCceEEEEccCCC----CCCcceEEEEEEcChHHHHHHHHHhCCCeeCC
Q 009076 363 GPDRIFVGGLPY--Y---FTEAQIRELLESFGPLRGFDLVKDRE----TGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 433 (544)
Q Consensus 363 ~~~~l~v~nl~~--~---~~ee~l~~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g 433 (544)
++++|+|.||-. + -.+++|+++|++||.|..|.|+.+.. ++.++|+|||+|.+.++|.+|+..|||.+|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 346899999942 2 24799999999999999999998754 45678999999999999999999999999999
Q ss_pred eEEEEEEc
Q 009076 434 KTLTVRRA 441 (544)
Q Consensus 434 ~~i~v~~~ 441 (544)
+.|.|.|+
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999998
No 286
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=6.7e-14 Score=110.80 Aligned_cols=74 Identities=16% Similarity=0.343 Sum_probs=64.6
Q ss_pred hhccceEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 241 TRHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 241 ~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
....++|||+|||+ .+++++|+++|+.||.|. .+.+ .+|||||+|.+.++|.+|+ .|+|..|.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~------------~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM------------QINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE------------EEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE------------EEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578999999998 999999999999999754 3333 3899999999999999999 899999999
Q ss_pred ceeEEcCCCC
Q 009076 319 APVKVRRPSD 328 (544)
Q Consensus 319 ~~l~v~~~~~ 328 (544)
+.|.|.++..
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 9999988653
No 287
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-14 Score=117.06 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEee-cCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI-NHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
.++|||+|||+.+|+++|+++|..|| |..+. ++.+..+ +.++|||||+|.+.++|.+||.|++..|.|+.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~------i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR------LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEE------CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEE------EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 57899999999999999999999999 76654 2333334 7889999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 009076 323 VRRPSDYN 330 (544)
Q Consensus 323 v~~~~~~~ 330 (544)
|.++....
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99876543
No 288
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=116.75 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|..||.|..+. +.....+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRAD-------ILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 467899999999999999999999999876653 222234667899999999999999999 799999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99986543
No 289
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.48 E-value=4.5e-15 Score=116.13 Aligned_cols=78 Identities=29% Similarity=0.436 Sum_probs=66.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
++|||+|||..+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.+ |.+|+ .|||..|.|+.|.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVK------LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEE------ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEE------EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 5899999999999999999999999876654 2333345788999999999999 99999 89999999999999
Q ss_pred cCCCCC
Q 009076 324 RRPSDY 329 (544)
Q Consensus 324 ~~~~~~ 329 (544)
.++...
T Consensus 75 ~~a~~~ 80 (90)
T 2ki2_A 75 TEANPK 80 (90)
T ss_dssp EEC---
T ss_pred EEcCCC
Confidence 987644
No 290
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.2e-14 Score=114.82 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=67.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|.+||.|. +.....+.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~----------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIK----------VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEE----------CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEE----------EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 478999999999999999999999999762 222356788999999999999999999 799999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 84 ~v~~a~~~ 91 (101)
T 2fc9_A 84 RLELQGPR 91 (101)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 99987654
No 291
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=1.1e-14 Score=121.88 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=69.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|.++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH------LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 467899999999999999999999999876553 2333346777999999999999999999 899999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 95 ~v~~a~~~ 102 (126)
T 3ex7_B 95 SVDWCFVR 102 (126)
T ss_dssp EEEESEES
T ss_pred EEEEecCC
Confidence 99987543
No 292
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.4e-15 Score=119.65 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=68.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHh-hcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAA-IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i-~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.| ..+. ++.+. ++.++|||||+|.+.++|.+||.+++..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~------i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 86 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH------VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREA 86 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE------ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE------EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEE
Confidence 46789999999999999999999999987 5543 23333 6889999999999999999999669999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99876543
No 293
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=117.11 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=69.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||..++..|.|+.|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV------IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 467999999999999999999999999886654 23333467788999999999999999994499999999999
Q ss_pred EcCCCCCC
Q 009076 323 VRRPSDYN 330 (544)
Q Consensus 323 v~~~~~~~ 330 (544)
|.++....
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99876443
No 294
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=6.3e-14 Score=113.27 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=65.7
Q ss_pred hhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 240 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
.....++|||+|||..+|+++|+++|++||.|..+. +. +|||||+|.+.++|.+|+ .|||..|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~------------i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVK------------IL--NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEE------------EE--TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE------------EE--CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345678999999999999999999999999765432 22 899999999999999999 899999999
Q ss_pred ceeEEcCCCCC
Q 009076 319 APVKVRRPSDY 329 (544)
Q Consensus 319 ~~l~v~~~~~~ 329 (544)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99999987543
No 295
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.3e-14 Score=114.26 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=67.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. +. .....++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~-------i~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE-------II-FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEE-------EE-CCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EE-ecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 468999999999999999999999999865442 11 112236899999999999999999 899999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999876543
No 296
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.8e-13 Score=110.40 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=69.4
Q ss_pred CCCCCCEEEEcCCCCCC-----------cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCC
Q 009076 360 GLEGPDRIFVGGLPYYF-----------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 428 (544)
Q Consensus 360 ~~~~~~~l~v~nl~~~~-----------~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g 428 (544)
...+.++|+|.||.... ++++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 34456799999994433 26899999999999999966 442 3699999999999999999999999
Q ss_pred CeeCCeEEEEEEcCCCC
Q 009076 429 IKMGDKTLTVRRANQGA 445 (544)
Q Consensus 429 ~~~~g~~i~v~~~~~~~ 445 (544)
..|+|+.|.|.|+.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999996653
No 297
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=9e-14 Score=110.29 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=65.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC--Cce
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE--GAP 320 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~--g~~ 320 (544)
.++|||+|||+.+|+++|+++|++||. |..+.+...+|||||+|.+.++|++|+ .||+..|. |+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGS------------IRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 578999999999999999999999996 445555556899999999999999999 79999999 999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|.|.++...
T Consensus 85 l~V~~a~~~ 93 (97)
T 1why_A 85 LRVDFAKSG 93 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 999987643
No 298
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.1e-14 Score=108.78 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=64.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-Hc-CCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL-DGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l-~~~~l~g~~ 320 (544)
..++|||+|||+.+++++|+++|++||. |..+.+..++|||||+|.+.++|.+|+ .| ++..|.|+.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~------------i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGE------------IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCC------------EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 4678999999999999999999999996 455555567999999999999999999 68 999999999
Q ss_pred eEEcCC
Q 009076 321 VKVRRP 326 (544)
Q Consensus 321 l~v~~~ 326 (544)
|.|.++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999875
No 299
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.8e-14 Score=114.59 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=65.7
Q ss_pred hccceEEEcCCCCC-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC--CceeC
Q 009076 242 RHARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFE 317 (544)
Q Consensus 242 ~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~--~~~l~ 317 (544)
.+.++|||+|||+. +|+++|+++|++||.| .++.+..++|||||+|.+.++|..|+ .|+ +..|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V------------~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKI------------KNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCC------------SEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCE------------EEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 34789999999998 9999999999999975 44445678999999999999999999 675 56799
Q ss_pred CceeEEcCCCCCC
Q 009076 318 GAPVKVRRPSDYN 330 (544)
Q Consensus 318 g~~l~v~~~~~~~ 330 (544)
|++|.|.++....
T Consensus 91 Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 91 GRCVKVDLSEKYK 103 (112)
T ss_dssp SSCCEEEEECSCS
T ss_pred CEEEEEEECcccc
Confidence 9999999876443
No 300
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=4.4e-14 Score=114.87 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=67.2
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|+++|++||. |..+.+..++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGS------------LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 45679999999999999999999999996 455556678999999999999999999 89999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|.|.|+..
T Consensus 76 l~V~~a~~ 83 (111)
T 1whx_A 76 LYLEWAPI 83 (111)
T ss_dssp CEEEEEET
T ss_pred EEEEECCC
Confidence 99998653
No 301
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=1.2e-14 Score=119.68 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=68.1
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCC
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMA---AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 318 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g 318 (544)
...++|||+|||+.+|+++|+++|+.||. |..+. ++.+ ..+.++|||||+|.+.++|.+||.+++..|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~------i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH------FIYT-REGRQSGEAFVELESEDDVKLALKKDRESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE------EEEC-SSSCEEEEEEEEBSSHHHHHHHGGGTTEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 34678999999999999999999999998 55553 2333 33788999999999999999999999999999
Q ss_pred ceeEEcCCC
Q 009076 319 APVKVRRPS 327 (544)
Q Consensus 319 ~~l~v~~~~ 327 (544)
+.|.|.++.
T Consensus 88 r~i~V~~a~ 96 (118)
T 2db1_A 88 RYIEVFKSH 96 (118)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEECC
Confidence 999998764
No 302
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=7.2e-15 Score=111.25 Aligned_cols=75 Identities=11% Similarity=0.250 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEE
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 323 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v 323 (544)
++|||+|||+.+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .++ ..|.|+.|.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEE------EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 4799999999999999999999999886653 2333346788999999999999999999 677 9999999999
Q ss_pred cCC
Q 009076 324 RRP 326 (544)
Q Consensus 324 ~~~ 326 (544)
.++
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
No 303
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=107.07 Aligned_cols=74 Identities=23% Similarity=0.422 Sum_probs=64.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+ .+. +|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------------~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLEC------------DII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEE------------EEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEE------------EEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 46789999999999999999999999975433 332 799999999999999999 899999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 73 ~v~~a~~~~ 81 (90)
T 2dnq_A 73 NVEASKNKS 81 (90)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 999876543
No 304
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.2e-14 Score=113.06 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=69.0
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
...++|||+|||+.+++++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||. ++..|.|+.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l 85 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ------VKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWC 85 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE------EEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEE
Confidence 3467899999999999999999999999876654 23333457789999999999999999996 4789999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cqg_A 86 DCKLPNSKQ 94 (103)
T ss_dssp EEECCCTTC
T ss_pred EEEecCCCC
Confidence 999876543
No 305
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.46 E-value=1.9e-14 Score=121.41 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=71.2
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~------i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY------IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE------CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4578999999999999999999999999886654 2333346788999999999999999999 89999999999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|.|.++...
T Consensus 119 l~V~~a~~~ 127 (135)
T 2lea_A 119 LRVQMARYG 127 (135)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 999987644
No 306
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.4e-14 Score=115.10 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=66.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIG-GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|.+||.|.. +. ++.+ .++.++|||||+|.+.++|.+||.+++..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~------i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i 86 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT------LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEE------CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence 3678999999999999999999999997654 32 1223 56788999999999999999999559999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 9987543
No 307
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=9.4e-14 Score=127.19 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCC---------cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee--
Q 009076 363 GPDRIFVGGLPYYF---------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM-- 431 (544)
Q Consensus 363 ~~~~l~v~nl~~~~---------~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~-- 431 (544)
..++|||+||+..+ ++++|+++|++||.|..|.|+.. +|||||+|.+.++|+.|+.+|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 44689999999998 79999999999999999999875 89999999999999999999999999
Q ss_pred ----------CCeEEEEEEcCCC
Q 009076 432 ----------GDKTLTVRRANQG 444 (544)
Q Consensus 432 ----------~g~~i~v~~~~~~ 444 (544)
.|+.|.|.|+...
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 8999999999654
No 308
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.7e-14 Score=112.41 Aligned_cols=75 Identities=28% Similarity=0.521 Sum_probs=66.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.| ..+.+..++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKA------------GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCC------------SEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCe------------EEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 46789999999999999999999999964 44555677999999999999999999 999999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpj_A 82 RVRFACHS 89 (99)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 99987653
No 309
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=111.37 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=67.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|+.| .|..+. ++.+ ..+.++|||||+|.+.++|.+||.|++..|.|+.|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~ 80 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIR------IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE 80 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEE------EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEE------EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEE
Confidence 46789999999999999999999999 776543 2333 567789999999999999999999999999999999
Q ss_pred EcCCCC
Q 009076 323 VRRPSD 328 (544)
Q Consensus 323 v~~~~~ 328 (544)
|.++..
T Consensus 81 v~~a~~ 86 (91)
T 2dgw_A 81 VFREKS 86 (91)
T ss_dssp EEEESS
T ss_pred EEECCc
Confidence 987653
No 310
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.46 E-value=5.8e-14 Score=122.44 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|..|+ .|||..|.|+.|
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY------IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE------CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 467899999999999999999999999887654 3334457889999999999999999999 899999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 143 ~v~~a~~~ 150 (158)
T 2kn4_A 143 RVQMARYG 150 (158)
T ss_dssp EEEEECCS
T ss_pred EEEECCCC
Confidence 99987643
No 311
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=3.6e-14 Score=112.41 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=67.9
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|+++|+.||.|. ++ ...+.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~----------~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR----------LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC----------CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE----------Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4578999999999999999999999998763 22 566778999999999999999999 79999999999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|.|.++...
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 999986543
No 312
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-14 Score=115.26 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=65.1
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v 323 (544)
.++|||+|||+.+|+++|+++|++| .|..+. ++.+ ..+.++|||||+|.+.++|.+||.+|+..|.|+.|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVH------LLKD-HVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEE------ECCC-TTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 5689999999999999999999999 665443 2222 3477899999999999999999999999999999999
Q ss_pred cCCC
Q 009076 324 RRPS 327 (544)
Q Consensus 324 ~~~~ 327 (544)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 7654
No 313
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=6.3e-14 Score=116.74 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=69.5
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+++++|+++|+.||.|..+. ++.+ ..+.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VDYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEE------EECC-SSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3467999999999999999999999999887654 2222 36778999999999999999999 79999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|.|.++..
T Consensus 106 l~V~~a~~ 113 (124)
T 2kt5_A 106 MDIQLVAS 113 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998654
No 314
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-13 Score=105.54 Aligned_cols=73 Identities=22% Similarity=0.422 Sum_probs=63.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|. .+.+. ++||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~------------~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVI------------ECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEE------------EEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEE------------EEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999999999999754 33333 569999999999999999 899999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99987644
No 315
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=117.00 Aligned_cols=80 Identities=25% Similarity=0.208 Sum_probs=67.2
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHh----hcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCcee
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAA----IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIF 316 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i----~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l 316 (544)
....++|||+|||+.+|+++|+++|++||.| ..+. |+...++.++|||||+|.+.++|.+||.+++..|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~-------i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l 92 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL-------FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 92 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEE-------EEECTTSCEEEEEEECCSSHHHHHHHHTTTTEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEE-------EEECCCCCEeeEEEEEECCHHHHHHHHHhCCCee
Confidence 3567899999999999999999999999875 3332 2222567889999999999999999996699999
Q ss_pred CCceeEEcCCC
Q 009076 317 EGAPVKVRRPS 327 (544)
Q Consensus 317 ~g~~l~v~~~~ 327 (544)
.|+.|.|..+.
T Consensus 93 ~gR~i~V~~a~ 103 (123)
T 2dha_A 93 GKRYIELFRST 103 (123)
T ss_dssp SSCEECCEEEC
T ss_pred CCeEEEEEECC
Confidence 99999997653
No 316
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.4e-14 Score=108.55 Aligned_cols=77 Identities=21% Similarity=0.425 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 442 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~ 442 (544)
..++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. +..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 3468999999999999999999999999999999875 589999999999999754311 345599999999997
Q ss_pred CCCC
Q 009076 443 QGAN 446 (544)
Q Consensus 443 ~~~~ 446 (544)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6643
No 317
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9.5e-15 Score=116.72 Aligned_cols=77 Identities=26% Similarity=0.210 Sum_probs=65.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|++|| ++.+. ++.+ ..+.++|||||+|.+.++|++||.+|+..|.|+.|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVH------IEIG-PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE 85 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEE------EEES-SSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEE------EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 357899999999999999999999999 43443 2333 367889999999999999999998899999999999
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|.++.
T Consensus 86 V~~~~ 90 (102)
T 1wez_A 86 LFLNS 90 (102)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 97644
No 318
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=2.1e-14 Score=120.48 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=67.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMA---AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
..++|||+|||+.+|+++|+++|++||. |..+. ++.+. .+.++|||||+|.+.++|.+||.+|+..|.|+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~------i~~d~-~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr 115 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH------FIYTR-EGRQSGEAFVELGSEDDVKMALKKDRESMGHR 115 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE------EEECS-SSCEEEEEEEECSSHHHHHHHHTTTEEESSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE------EEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCEECCE
Confidence 4678999999999999999999999998 55543 23333 38889999999999999999999999999999
Q ss_pred eeEEcCCC
Q 009076 320 PVKVRRPS 327 (544)
Q Consensus 320 ~l~v~~~~ 327 (544)
.|.|.++.
T Consensus 116 ~i~V~~a~ 123 (136)
T 2hgl_A 116 YIEVFKSH 123 (136)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99998754
No 319
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=3.2e-14 Score=123.69 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=70.8
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|||+.+|+++|.++|+.||.|..|. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKII------MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4578999999999999999999999999876543 2333335678899999999999999999 79999999999
Q ss_pred eEEcCCCCCC
Q 009076 321 VKVRRPSDYN 330 (544)
Q Consensus 321 l~v~~~~~~~ 330 (544)
|.|.++....
T Consensus 111 l~V~~a~~~~ 120 (156)
T 1h2v_Z 111 IRTDWDAGFK 120 (156)
T ss_dssp CEEEEESCCC
T ss_pred EEEEECCCCC
Confidence 9999876543
No 320
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=5.6e-13 Score=106.93 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=64.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|.. +.+. ++||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~------------v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLER------------VKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEE------------EEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE------------EEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 3678999999999999999999999997543 3332 679999999999999999 799999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 76 ~v~~a~~~~ 84 (103)
T 2dgu_A 76 EIVFAKPPD 84 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 999876544
No 321
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=2.5e-13 Score=121.89 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=71.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 444 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~~~~ 444 (544)
++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..+ +..|+|+.|.|.+...-
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 589999999999999999999999999999999885 5889999999999999999999665 56999999999998543
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=6.5e-14 Score=119.84 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.||.|..+.+.. .-.+....++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~-~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRI-MFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHH-HCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccc-eeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 367899999999999999999999999876531000 001333468899999999999999999999 799999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999876543
No 323
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=108.89 Aligned_cols=75 Identities=21% Similarity=0.434 Sum_probs=64.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCC-ceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG-IIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~-~~l~g~~ 320 (544)
..++|||+|||+.+|+++|+++|++||.|+... ++ .++|||||+|.+.++|.+|+ .||+ ..|.|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~-------~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ-------VL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSC-------EE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEE-------EE-----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 367899999999999999999999999732211 11 35899999999999999999 8999 9999999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|.|.++...
T Consensus 75 l~v~~a~~~ 83 (93)
T 2cqh_A 75 MEVDYSVSK 83 (93)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999987643
No 324
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.44 E-value=4.9e-14 Score=120.28 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=67.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------CCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEE------EeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 478999999999999999999999999876543 2233345778999999999999999999 899999999999
Q ss_pred EEcCC
Q 009076 322 KVRRP 326 (544)
Q Consensus 322 ~v~~~ 326 (544)
.|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99863
No 325
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=7.3e-14 Score=111.68 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=62.6
Q ss_pred EcCCCCCCcHHHHHHHH------------HhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 369 VGGLPYYFTEAQIRELL------------ESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 369 v~nl~~~~~ee~l~~~f------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
+.||+..+++++|+++| ++||.|..|.|+.+. +|.++|+|||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667776666555 999999999999885 57889999999999999999999999999999999
Q ss_pred EEEEc
Q 009076 437 TVRRA 441 (544)
Q Consensus 437 ~v~~~ 441 (544)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99997
No 326
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.44 E-value=4.4e-14 Score=112.15 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=68.2
Q ss_pred hccceEEEcCCCCCCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 316 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l 316 (544)
...++|||+|||+.+++++|+ ++|++||.|..+. + ..++.++|||||+|.+.++|..|+ .|+|..|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~-------i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDIL-------V--SRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEE-------C--CHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEE-------E--EcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 346799999999999999999 9999999765432 1 135678899999999999999999 8999999
Q ss_pred CCceeEEcCCCCCC
Q 009076 317 EGAPVKVRRPSDYN 330 (544)
Q Consensus 317 ~g~~l~v~~~~~~~ 330 (544)
.|+.|.|.++....
T Consensus 77 ~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 77 YDKPMRIQYAKTDS 90 (97)
T ss_dssp TTEECEEEECSSCC
T ss_pred CCcEEEEEEccCCC
Confidence 99999999876543
No 327
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.7e-13 Score=108.97 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=64.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC---
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--- 318 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g--- 318 (544)
..++|||+|||+.+|+++|+++|.+||.|.. +.+... |||||+|.+.++|++|| .||+..|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~------------~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY------------ADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEE------------EEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE------------EEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 3678999999999999999999999997543 333333 99999999999999999 899999999
Q ss_pred --ceeEEcCCCCCC
Q 009076 319 --APVKVRRPSDYN 330 (544)
Q Consensus 319 --~~l~v~~~~~~~ 330 (544)
+.|.|.++....
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999876543
No 328
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.5e-14 Score=116.47 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=67.2
Q ss_pred ccceEEEcCCCCCCcHHHHH---HHHHHHHHhhcCCCCCCCCceEEEee---cCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009076 243 HARRVYVGGLPPTANEQSVA---TFFSQVMAAIGGNTAGPGDAVVNVYI---NHEKKFAFVEMRSVEEASNAM-ALDGII 315 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~---~~f~~~G~i~~~~~~~~~~~v~~~~~---~~~kg~afV~f~~~~~A~~Al-~l~~~~ 315 (544)
..++|||+|||+.+++++|. ++|.+||.|..+. ++.+..+ +.++|||||+|.+.++|.+|+ .||+..
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~------i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVV------INNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEE------EECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEE------EecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 35689999999999999999 9999999876543 1111122 245689999999999999999 899999
Q ss_pred eCCceeEEcCCCCCC
Q 009076 316 FEGAPVKVRRPSDYN 330 (544)
Q Consensus 316 l~g~~l~v~~~~~~~ 330 (544)
|.|+.|.|.++....
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999876543
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=102.45 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=61.3
Q ss_pred cce-EEEcCCCCCCcHHH----HHHHHHHHH-HhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009076 244 ARR-VYVGGLPPTANEQS----VATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 316 (544)
Q Consensus 244 ~~~-l~V~nLp~~~te~~----L~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l 316 (544)
..+ |||+|||..+++++ |+++|++|| +|+ ++ ++ |+|||+|.+.++|+.|+ .|+|..|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl------------~V-tg---G~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL------------SI-TG---CSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE------------EC-CT---TCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE------------EE-ec---CEEEEEECCHHHHHHHHHHhcCCcc
Confidence 345 99999999999988 558999994 754 33 22 99999999999999999 9999999
Q ss_pred CCceeEEcCCCCCCc
Q 009076 317 EGAPVKVRRPSDYNP 331 (544)
Q Consensus 317 ~g~~l~v~~~~~~~~ 331 (544)
.|++|+|.++.....
T Consensus 72 ~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 72 FGNRIIVSFTPKNRE 86 (96)
T ss_dssp SSSCCEEESSCCSCC
T ss_pred CCceEEEEecCCCcc
Confidence 999999999876543
No 330
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-14 Score=116.00 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=67.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMA---AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
..++|||+|||+.+|+++|+++|+.||. |..+. ++.+.. +.++|||||+|.+.++|.+||.+++..|.|+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~------i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 82 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIH------FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQR 82 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEE------CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEE------EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCe
Confidence 4678999999999999999999999987 55543 233333 7889999999999999999999999999999
Q ss_pred eeEEcCCC
Q 009076 320 PVKVRRPS 327 (544)
Q Consensus 320 ~l~v~~~~ 327 (544)
.|.|.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99998765
No 331
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.3e-13 Score=106.23 Aligned_cols=73 Identities=29% Similarity=0.477 Sum_probs=63.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHH--HHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQV--MAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~--G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
..++|||+|||+.+|+++|+++|++| |. |..+.+ .+|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~------------v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGA------------VERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcc------------eEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 46899999999999999999999999 64 333333 3789999999999999999 7999999999
Q ss_pred eeEEcCCCCC
Q 009076 320 PVKVRRPSDY 329 (544)
Q Consensus 320 ~l~v~~~~~~ 329 (544)
.|.|.++...
T Consensus 80 ~l~v~~a~~~ 89 (99)
T 2cpd_A 80 PIEVTLAKPV 89 (99)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999987654
No 332
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.43 E-value=4.3e-14 Score=123.98 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|.++|.+||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH------LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE------EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 357899999999999999999999999876553 2333346677999999999999999999 899999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 145 ~V~~a~~~ 152 (165)
T 1rk8_A 145 QVDWCFVK 152 (165)
T ss_dssp EEEESEEC
T ss_pred EEEEecCC
Confidence 99986543
No 333
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.3e-14 Score=113.37 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=66.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|+.|+.+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---------~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRAR---------IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEE---------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEE---------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 467899999999999999999999774321 2333346778899999999999999999 799999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2fc8_A 85 TLDWAKPKG 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999876543
No 334
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=3.1e-13 Score=119.42 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=68.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+++++|+++|+.||.|..+. ++.+ .++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d-~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VDYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEE------ECCC-TTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEC-CCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 367899999999999999999999999876654 2222 25778999999999999999999 799999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 160 ~V~~a~~ 166 (177)
T 2f3j_A 160 DIQLVAS 166 (177)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9988653
No 335
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=119.59 Aligned_cols=82 Identities=26% Similarity=0.285 Sum_probs=71.7
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhc--------CCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIG--------GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 312 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--------~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~ 312 (544)
...++|||+|||..+++++|+++|+.||.|.. +. ++.+..++.++|||||+|.+.++|.+|+ .||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMIN------LYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 45678999999999999999999999999876 43 3444466788999999999999999999 799
Q ss_pred CceeCCceeEEcCCCCC
Q 009076 313 GIIFEGAPVKVRRPSDY 329 (544)
Q Consensus 313 ~~~l~g~~l~v~~~~~~ 329 (544)
+..|.|+.|.|.++...
T Consensus 79 g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 79 GKEFSGNPIKVSFATRR 95 (116)
Confidence 99999999999987644
No 336
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.4e-13 Score=108.32 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=63.6
Q ss_pred ccceEEE--cCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee---
Q 009076 243 HARRVYV--GGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF--- 316 (544)
Q Consensus 243 ~~~~l~V--~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l--- 316 (544)
+.++||| +||++.+|+++|+++|++||.| ..+.+..++|||||+|.+.++|.+|+ .|||..|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v------------~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLV------------DALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCE------------EEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCe------------EEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 3568999 7799999999999999999964 44445557899999999999999999 8999988
Q ss_pred --CCceeEEcCCCC
Q 009076 317 --EGAPVKVRRPSD 328 (544)
Q Consensus 317 --~g~~l~v~~~~~ 328 (544)
.|++|.|.++..
T Consensus 92 lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 92 LGQKITLYLNFVEK 105 (114)
T ss_dssp TSCEEECEEEEESC
T ss_pred cCCCcEEEEEeccc
Confidence 688999987553
No 337
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.7e-13 Score=104.95 Aligned_cols=74 Identities=28% Similarity=0.439 Sum_probs=64.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|++||.|..+ .+. ++||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v------------~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIEC------------DIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEE------------EEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------------EEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 46789999999999999999999999976433 222 559999999999999999 899999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 75 ~V~~a~~~~ 83 (92)
T 2dgt_A 75 HVQLSTSRL 83 (92)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999876543
No 338
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.41 E-value=4.6e-14 Score=130.31 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=69.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHH--HhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCc
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVM--AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 319 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~ 319 (544)
..++|||+|||+.+|+++|+++|+.|| .|..+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~------i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEE------EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567899999999999999999999999 777654 3444457888999999999999999999 7999999999
Q ss_pred eeEEcCCCC
Q 009076 320 PVKVRRPSD 328 (544)
Q Consensus 320 ~l~v~~~~~ 328 (544)
.|.|.++..
T Consensus 141 ~l~V~~a~~ 149 (229)
T 3q2s_C 141 NPVVTPVNK 149 (229)
T ss_dssp CCEEEECCH
T ss_pred EeEEEECCC
Confidence 999998653
No 339
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=9e-14 Score=113.94 Aligned_cols=79 Identities=15% Similarity=0.333 Sum_probs=66.6
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee----
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF---- 316 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l---- 316 (544)
...++|||+|||+.+|+++|+++|..||.|..+. ++.+ ..+.++|||||+|.+.++|.+|+ .|||..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTR------ILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEE------EEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 3467899999999999999999999999887654 2223 36778999999999999999999 8999999
Q ss_pred ----CCceeEEcCCC
Q 009076 317 ----EGAPVKVRRPS 327 (544)
Q Consensus 317 ----~g~~l~v~~~~ 327 (544)
.+++|.|.++.
T Consensus 96 ~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSG 110 (114)
T ss_dssp TSCCCSSCBEEEECC
T ss_pred cccCCCCceeEEccC
Confidence 56778887754
No 340
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.8e-13 Score=104.21 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=65.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|| .+|+++|+++|++||. |..+.++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCC------------EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4678999996 8999999999999996 555666789999999999999999999 999999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 80 ~v~~a~~~ 87 (97)
T 1x5p_A 80 KVNIARKQ 87 (97)
T ss_dssp EEECCSSC
T ss_pred EEEECCCC
Confidence 99987644
No 341
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.40 E-value=1.5e-13 Score=106.82 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=64.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+++++|+++|++| .|..+ .+..++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~------------~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYC------------YVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCE------------EEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEE------------EEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 46789999999999999999999999 65443 22378999999999999999999 899999999999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 71 ~V~~a~~ 77 (88)
T 1wg1_A 71 IVQLQPT 77 (88)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998643
No 342
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7.2e-13 Score=104.30 Aligned_cols=75 Identities=23% Similarity=0.401 Sum_probs=62.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCc-EEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK-FAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg-~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|..||.|. .+......+ ||||+|.+.++|.+|+.|++..|.|+.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~------------~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVA------------SVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEE------------EEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeE------------EEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEE
Confidence 467899999999999999999999999753 222222211 9999999999999999999999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 75 ~V~~a~~~ 82 (94)
T 2e5g_A 75 RVRPREQK 82 (94)
T ss_dssp CCBCSCCS
T ss_pred EEEECCcC
Confidence 99876543
No 343
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.40 E-value=3.1e-14 Score=119.76 Aligned_cols=80 Identities=24% Similarity=0.214 Sum_probs=67.2
Q ss_pred hhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCce
Q 009076 241 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 320 (544)
Q Consensus 241 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~ 320 (544)
....++|||+|||+.+|+++|+++|++|| |+.+. ++.+. .+.++|||||+|.+.++|.+||.+|+..|.|+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~------i~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH------IEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE------CCCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE------EEECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 34578999999999999999999999999 55544 23333 378899999999999999999999999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|.|..+..
T Consensus 115 i~V~~a~~ 122 (139)
T 2hgn_A 115 IELFLNST 122 (139)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99976543
No 344
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.40 E-value=7.5e-13 Score=113.13 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=64.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC--ce
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--AP 320 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g--~~ 320 (544)
..+|||+||++.+|+++|+++|++||.|..+. +....++|||||+|.+.++|..|+ .|||..|.| +.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~----------i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~ 115 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKII----------TFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 115 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEE----------EEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEE----------EEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE
Confidence 45799999999999999999999999875432 223446789999999999999999 899999966 99
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|+|.++...
T Consensus 116 L~V~~Ak~~ 124 (164)
T 1sjr_A 116 LRIDFSKLT 124 (164)
T ss_dssp EEEEECSSS
T ss_pred EEEEEecCC
Confidence 999987654
No 345
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.1e-13 Score=107.88 Aligned_cols=74 Identities=16% Similarity=0.291 Sum_probs=63.8
Q ss_pred hhccceEEEcCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 241 TRHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 241 ~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
....++|||+|||+ .+|+++|+++|++||.|..+ .+ .+|||||+|.+.++|..|+ .|++..|.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v------------~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI------------NI--KNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEE------------EE--ETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE------------EE--eCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 34578999999998 99999999999999976443 22 3899999999999999999 899999999
Q ss_pred ceeEEcCCCC
Q 009076 319 APVKVRRPSD 328 (544)
Q Consensus 319 ~~l~v~~~~~ 328 (544)
+.|.|.++..
T Consensus 73 ~~l~V~~a~~ 82 (96)
T 2kvi_A 73 KKLILEVSSS 82 (96)
T ss_dssp TTBCEEEEEC
T ss_pred cEEEEEEcCc
Confidence 9999988654
No 346
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.6e-12 Score=105.19 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCCCC----------cHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeC
Q 009076 363 GPDRIFVGGLPYYF----------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 432 (544)
Q Consensus 363 ~~~~l~v~nl~~~~----------~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 432 (544)
++++|.|.||-... .+++|+++|++||.|..|.|.++. ++|+|||+|.+.++|.+|+..|||.+|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45689999993221 247999999999999999997763 4899999999999999999999999999
Q ss_pred CeEEEEEEc
Q 009076 433 DKTLTVRRA 441 (544)
Q Consensus 433 g~~i~v~~~ 441 (544)
|+.|.|.|+
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999999998
No 347
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=5.8e-14 Score=115.74 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=63.9
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhh--cCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAI--GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
...++|||+|||+.+|+++|+++|++| .|. .+. ++.+.. +.++|||||+|.+.++|.+||.+++..|.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~------i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGIT------LPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEE------CCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEE------EEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCE
Confidence 346789999999999999999999999 444 333 222333 7889999999999999999997788999999
Q ss_pred eeEEcCC
Q 009076 320 PVKVRRP 326 (544)
Q Consensus 320 ~l~v~~~ 326 (544)
.|.|.++
T Consensus 112 ~I~V~~a 118 (126)
T 2hgm_A 112 YIEVFKS 118 (126)
T ss_dssp CCCCEEE
T ss_pred EEEEEEC
Confidence 9999764
No 348
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.38 E-value=5.4e-13 Score=108.41 Aligned_cols=72 Identities=24% Similarity=0.442 Sum_probs=64.2
Q ss_pred ccceEEEcCCCCC-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++|||+|||+. +|+++|+++|++||.|..+ .+ ++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v------------~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGC------------SV--HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEE------------EE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEE------------EE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3579999999999 9999999999999976443 22 6899999999999999999 99999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|.|.++..
T Consensus 92 l~V~~a~~ 99 (110)
T 1wf1_A 92 LDINMAGE 99 (110)
T ss_dssp CCEEESCC
T ss_pred EEEEECCC
Confidence 99998754
No 349
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.8e-13 Score=104.63 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=64.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|+++|..||.|..+ ..+......+.|||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~---------~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESC---------EQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEE---------EEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEE---------EEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 35789999999999999999999999975332 11233344566999999999999999 899999999999
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99987654
No 350
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.38 E-value=3.6e-13 Score=136.32 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=72.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|||+|||+.+|+++|.++|..||.|..|. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIH------MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEE------eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 347999999999999999999999999987765 3445567888999999999999999999 999999999999
Q ss_pred EEcCCCCCC
Q 009076 322 KVRRPSDYN 330 (544)
Q Consensus 322 ~v~~~~~~~ 330 (544)
.|.++....
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999876543
No 351
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.36 E-value=7.8e-14 Score=111.83 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=66.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+ ..+.++|||||+|.+.++|.+|+. ++..|.|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVK------IITD-RTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEEC-TTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EEEC-CCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEE
Confidence 468999999999999999999999999886654 2333 267789999999999999999999 99999999999
Q ss_pred EcCCC
Q 009076 323 VRRPS 327 (544)
Q Consensus 323 v~~~~ 327 (544)
|.++.
T Consensus 80 v~~a~ 84 (102)
T 2xs2_A 80 LGPAI 84 (102)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 98754
No 352
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.35 E-value=1.7e-12 Score=111.91 Aligned_cols=74 Identities=28% Similarity=0.439 Sum_probs=64.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
..++|||+|||+.+|+++|+++|++||.|.. +.+.. ++|||||+|.+.++|..|+ .|||..|.|++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~------------v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRS------------VWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEE------------EEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE------------EEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4679999999999999999999999997543 33332 5999999999999999999 89999999999
Q ss_pred eEEcCCCC
Q 009076 321 VKVRRPSD 328 (544)
Q Consensus 321 l~v~~~~~ 328 (544)
|.|.++..
T Consensus 140 l~v~~a~~ 147 (150)
T 2i2y_A 140 VRVELSNG 147 (150)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99998653
No 353
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.33 E-value=1.4e-12 Score=107.32 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=63.3
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcE-EEEEecCHHHHHHHH-HcCCceeCC--c
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKF-AFVEMRSVEEASNAM-ALDGIIFEG--A 319 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~-afV~f~~~~~A~~Al-~l~~~~l~g--~ 319 (544)
-..|||+||++.+|+++|+++|++||.|..+. + ....+|| |||+|.+.++|..|+ .|||..|.| +
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~-------i----~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKII-------T----FTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEE-------E----EEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEE-------E----EcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 34688999999999999999999999875432 1 1234687 999999999999999 999999998 8
Q ss_pred eeEEcCCCCC
Q 009076 320 PVKVRRPSDY 329 (544)
Q Consensus 320 ~l~v~~~~~~ 329 (544)
.|+|.++...
T Consensus 97 ~LrI~~ak~~ 106 (130)
T 3zzy_A 97 TLRIDFSKLT 106 (130)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecCCC
Confidence 9999987643
No 354
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.2e-12 Score=107.11 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=59.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce-
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP- 320 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~- 320 (544)
..++|||+|||+.+|+++|+++|.+||.|. .+.+... |||||+|.+.++|++|| .||+..|.|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~------------~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC------------YADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEE------------EEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE------------EEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 467899999999999999999999999654 3333333 99999999999999999 89999999998
Q ss_pred ----eEEcCC
Q 009076 321 ----VKVRRP 326 (544)
Q Consensus 321 ----l~v~~~ 326 (544)
|+|...
T Consensus 82 ~~~~i~v~~~ 91 (115)
T 3beg_B 82 ETAYIRVKVD 91 (115)
T ss_dssp CCCBCEEEEC
T ss_pred eeEEEEeccC
Confidence 555543
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.8e-13 Score=108.12 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=58.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEee---cCCCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI---NHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~---~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
..++|||+|||+.+|+++|+++|++||.|. +. .+.+..+ +.++|||||+|.+.++|++|| .|+ .+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~------~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G 77 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD------WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDG 77 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE------CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE------EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCC
Confidence 468899999999999999999999999875 22 1222223 688999999999999999999 773 3566
Q ss_pred ceeEEcC
Q 009076 319 APVKVRR 325 (544)
Q Consensus 319 ~~l~v~~ 325 (544)
+.|.+..
T Consensus 78 ~~~~~~~ 84 (114)
T 2dnl_A 78 KLYLCVS 84 (114)
T ss_dssp EEEEEEC
T ss_pred cEEEecc
Confidence 6666654
No 356
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=3e-12 Score=104.90 Aligned_cols=72 Identities=18% Similarity=0.077 Sum_probs=60.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcE-EEEEecCHHHHHHHH-HcCCceeCC--cee
Q 009076 246 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKF-AFVEMRSVEEASNAM-ALDGIIFEG--APV 321 (544)
Q Consensus 246 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~-afV~f~~~~~A~~Al-~l~~~~l~g--~~l 321 (544)
.|||+||++.+|+++|+++|++||.|..+. |. . . .|| |||+|.+.++|..|+ .|||..|.| +.|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~-------i~---~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIV-------IF---K-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEE-------EE---E-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEE-------EE---e-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 578999999999999999999999876542 21 1 2 486 999999999999999 999999988 589
Q ss_pred EEcCCCCC
Q 009076 322 KVRRPSDY 329 (544)
Q Consensus 322 ~v~~~~~~ 329 (544)
+|.++...
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 99987644
No 357
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.7e-13 Score=108.12 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=65.5
Q ss_pred ceEEEcCC----CCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecC----HHH----HHHHHH--
Q 009076 245 RRVYVGGL----PPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS----VEE----ASNAMA-- 310 (544)
Q Consensus 245 ~~l~V~nL----p~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~----~~~----A~~Al~-- 310 (544)
.+|||+|| |+.+++.+|+++|+.||+|..|. .+.+..++.++|||||+|.+ ++. |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~------li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~ 76 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFE------AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH 76 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEE------EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 57999999 99999999999999999998887 68888899999999999996 333 677763
Q ss_pred -cCCceeCCceeEEcC
Q 009076 311 -LDGIIFEGAPVKVRR 325 (544)
Q Consensus 311 -l~~~~l~g~~l~v~~ 325 (544)
++|..|.|+.|+|..
T Consensus 77 ~lng~~I~Gr~irV~l 92 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVIL 92 (136)
T ss_dssp TTTCEEETTEEEEEEE
T ss_pred hhcCCeecCcEEEEEE
Confidence 799999999999975
No 358
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=7e-13 Score=102.93 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=57.5
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCcee
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 321 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l 321 (544)
....+|||+|||+.+|+++|+++|++||.|..+.++ ..++|||||+|.+.++|.++... ...+.|+.|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~-----------~~srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v 76 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-----------KPFRAFAFVTFADDKVAQSLCGE-DLIIKGISV 76 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC-----------SSCCSEEEEEESCHHHHHHHTTC-EEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe-----------eCCCCEEEEEECCHHHHHHHcCC-CcccCCEEE
Confidence 346789999999999999999999999976554311 13799999999999999853321 344669999
Q ss_pred EEcCCCC
Q 009076 322 KVRRPSD 328 (544)
Q Consensus 322 ~v~~~~~ 328 (544)
.|.++..
T Consensus 77 ~v~~a~~ 83 (89)
T 3d2w_A 77 HISNAEP 83 (89)
T ss_dssp EEEECC-
T ss_pred EEEEcCC
Confidence 9987654
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=2.1e-12 Score=106.45 Aligned_cols=74 Identities=24% Similarity=0.332 Sum_probs=64.7
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~ 320 (544)
...++|||+|| .+|+++|+++|+.||.|.. +.+..++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~------------v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID------------LSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSC------------EEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEE------------EEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34789999996 6999999999999997543 344588999999999999999999 99999999999
Q ss_pred eEEcCCCCC
Q 009076 321 VKVRRPSDY 329 (544)
Q Consensus 321 l~v~~~~~~ 329 (544)
|.|.++...
T Consensus 103 l~V~~a~~~ 111 (121)
T 2bz2_A 103 LKVNIARKQ 111 (121)
T ss_dssp CEEEECCSS
T ss_pred EEEEEeCCC
Confidence 999987644
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=1.3e-12 Score=117.29 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=69.9
Q ss_pred hhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCc
Q 009076 240 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 319 (544)
Q Consensus 240 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~ 319 (544)
.....++|||+|||+.+|+++|.++|++||.|..+. +.....+.++|||||+|.+.++|.+|+.+.+..|.|+
T Consensus 105 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-------i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr 177 (193)
T 2voo_A 105 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-------MRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKET 177 (193)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEE-------EEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTE
T ss_pred hccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEE-------EEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 345678999999999999999999999999876553 2222346789999999999999999996666799999
Q ss_pred eeEEcCCCCCC
Q 009076 320 PVKVRRPSDYN 330 (544)
Q Consensus 320 ~l~v~~~~~~~ 330 (544)
.|.|.+..++.
T Consensus 178 ~l~V~~~~~y~ 188 (193)
T 2voo_A 178 DLLILFKDDYF 188 (193)
T ss_dssp ECEEEETTTC-
T ss_pred EEEEEEhHHHH
Confidence 99999877664
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=96.69 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=63.0
Q ss_pred CEEEEcCCC-------CCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 365 DRIFVGGLP-------YYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 365 ~~l~v~nl~-------~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
.+|.|.-.. ..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 466666554 4589999999999999999999983 4689999999999999999988555 6799999
Q ss_pred EEEcCCCCC
Q 009076 438 VRRANQGAN 446 (544)
Q Consensus 438 v~~~~~~~~ 446 (544)
|.|+.....
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999976643
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.5e-12 Score=101.13 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=60.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeE
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 322 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~ 322 (544)
..++|||+|||+.+|+++|+++|++||.|..+.+ ...++|||||+|.+.++|++|+.. ...+.|+.|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-----------~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI-----------PKPFRAFAFVTFADDQIAQSLCGE-DLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC-----------CSSCCSCCEEECSCHHHHHHTTTC-EEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEE-----------ecCCCCEEEEEECCHHHHHHHhcC-CceeCCEEEE
Confidence 4689999999999999999999999997654431 123799999999999999876532 4567999999
Q ss_pred EcCCCCC
Q 009076 323 VRRPSDY 329 (544)
Q Consensus 323 v~~~~~~ 329 (544)
|.++...
T Consensus 72 v~~a~~~ 78 (88)
T 1wf0_A 72 ISNAEPK 78 (88)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9987644
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=9.8e-12 Score=120.20 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=65.9
Q ss_pred CCCCCEEEEcC--CCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCee---CCe-
Q 009076 361 LEGPDRIFVGG--LPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM---GDK- 434 (544)
Q Consensus 361 ~~~~~~l~v~n--l~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~- 434 (544)
..++.+|||+| |+..+++++|+++|++||.|..|.|... +|||||+|.+.++|++|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~------kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT------CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45567999999 5788999999999999999999888653 79999999999999999999999988 344
Q ss_pred -EEEEEEcC
Q 009076 435 -TLTVRRAN 442 (544)
Q Consensus 435 -~i~v~~~~ 442 (544)
+|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67788873
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=5.4e-12 Score=115.54 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=66.2
Q ss_pred hccceEEEcCCCCCC---------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-Hc
Q 009076 242 RHARRVYVGGLPPTA---------NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL 311 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~---------te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l 311 (544)
...++|||+||+..+ ++++|+++|++||.| ..+.+..++|||||+|.+.++|+.|+ .|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I------------~~v~v~~~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDI------------DRIRYVESKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCE------------EEEEEEGGGTEEEEEESSHHHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCE------------EEEEEECCCCEEEEEeCCHHHHHHHHHHh
Confidence 357899999999998 899999999999964 44455568999999999999999999 99
Q ss_pred CCcee------------CCceeEEcCCCCCC
Q 009076 312 DGIIF------------EGAPVKVRRPSDYN 330 (544)
Q Consensus 312 ~~~~l------------~g~~l~v~~~~~~~ 330 (544)
+|..| .|+.|.|.|+....
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 99999 89999999987543
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=4.2e-12 Score=101.51 Aligned_cols=64 Identities=33% Similarity=0.478 Sum_probs=58.7
Q ss_pred CCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-----------ccCceEEEEecCCCCCCCce
Q 009076 474 SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-----------FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 474 ~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-----------~~~g~a~V~f~~~~~A~a~~ 537 (544)
.+|++|++|.||++++++.++.+|++|.++|+++|++||.|++| .+.|+|||+|.+.++|.+|+
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai 76 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAM 76 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999 14799999999999997664
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.21 E-value=4.3e-12 Score=102.63 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=59.6
Q ss_pred CCCCcceeEecCCCCcccCCChHHHHHHHHHHHHHHhhcCCceee-----ccCceEEEEecCCCCCCCce
Q 009076 473 GSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-----FCYKESGLIYTDRRLHNPQF 537 (544)
Q Consensus 473 ~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~i-----~~~g~a~V~f~~~~~A~a~~ 537 (544)
+.++++|++|.||++++++.++++|.+|.++|+++|++||.|.+| ...|+|||+|.+.++|.+|+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai 72 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAV 72 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHH
Confidence 457899999999999999999999999999999999999999999 35899999999999996654
No 367
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.17 E-value=1.6e-11 Score=98.12 Aligned_cols=79 Identities=19% Similarity=0.074 Sum_probs=63.9
Q ss_pred ccceEEEcCCCC-----CCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEe-ecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009076 243 HARRVYVGGLPP-----TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY-INHEKKFAFVEMRSVEEASNAM-ALDGII 315 (544)
Q Consensus 243 ~~~~l~V~nLp~-----~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~-~~~~kg~afV~f~~~~~A~~Al-~l~~~~ 315 (544)
++++|+|.||.. .-++++|+++|++||.|..+. ++.+.. .+.++|||||+|.+.++|.+|+ .|||..
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~------i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCV------IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEE------EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEE------EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 467899999963 237899999999999887653 111112 2578999999999999999999 999999
Q ss_pred eCCceeEEcCCC
Q 009076 316 FEGAPVKVRRPS 327 (544)
Q Consensus 316 l~g~~l~v~~~~ 327 (544)
|.|+.|.|.++.
T Consensus 81 ~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 81 FGGRVVKACFYN 92 (105)
T ss_dssp ETTEECEEEECC
T ss_pred ECCcEEEEEEcC
Confidence 999999998764
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2e-10 Score=93.27 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=62.6
Q ss_pred ccceEEEcCCCCCC-----------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-H
Q 009076 243 HARRVYVGGLPPTA-----------NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-A 310 (544)
Q Consensus 243 ~~~~l~V~nLp~~~-----------te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~ 310 (544)
..++|+|.||.... ++++|+++|++||.|..+. +....++|||||+|.+.++|.+|+ .
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~----------i~~~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL----------LFDRHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEE----------EETTCTTCEEEEECSCHHHHHHHHHH
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEE----------EecCCCCEEEEEEECCHHHHHHHHHH
Confidence 46789999994433 2689999999999876531 223347999999999999999999 9
Q ss_pred cCCceeCCceeEEcCCCC
Q 009076 311 LDGIIFEGAPVKVRRPSD 328 (544)
Q Consensus 311 l~~~~l~g~~l~v~~~~~ 328 (544)
|||..|.|++|.|.++..
T Consensus 84 lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp STTCEETTEECEEEECCS
T ss_pred cCCCEECCcEEEEEEeCC
Confidence 999999999999998654
No 369
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.6e-10 Score=90.56 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcC-hHHHHHHHHHhC--CCeeCCeE
Q 009076 360 GLEGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD-LSVTDIACAALN--GIKMGDKT 435 (544)
Q Consensus 360 ~~~~~~~l~v~nl~~~-~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~e~A~~A~~~l~--g~~~~g~~ 435 (544)
.....+.|+|+||+.. +++++|+++|+.||.|.+|.+..+. ..|||+|.+ .++|..|+.+|| |..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3455679999999999 9999999999999999999999884 369999999 899999999995 88899999
Q ss_pred EEEEEc
Q 009076 436 LTVRRA 441 (544)
Q Consensus 436 i~v~~~ 441 (544)
+.+...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888876
No 370
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=9.8e-10 Score=82.59 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=61.1
Q ss_pred CEEEEcCCCC----CCcH----HHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEE
Q 009076 365 DRIFVGGLPY----YFTE----AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 436 (544)
Q Consensus 365 ~~l~v~nl~~----~~~e----e~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i 436 (544)
.+|+|...+. .+-. .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+|+. |||..++|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 3777776652 2322 689999999999999999987 28999999999999997 99999999999
Q ss_pred EEEEcCCCCC
Q 009076 437 TVRRANQGAN 446 (544)
Q Consensus 437 ~v~~~~~~~~ 446 (544)
+|+++.+...
T Consensus 79 kV~lkt~dW~ 88 (91)
T 2dnr_A 79 TIALKSPSGP 88 (91)
T ss_dssp EEEECCCSSC
T ss_pred EEEeCCCCcc
Confidence 9999976543
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.01 E-value=2.3e-11 Score=97.07 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=56.8
Q ss_pred EcCCCCCCcHHHHHHHH------------HHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009076 249 VGGLPPTANEQSVATFF------------SQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 315 (544)
Q Consensus 249 V~nLp~~~te~~L~~~f------------~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~ 315 (544)
+.|||..+++++|.+.| ++||.|..+. |.....+.++|||||+|.+.++|.+|+ .|||..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~-------i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMN-------VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE-------ECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEE-------EEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 56777778888777666 9999877654 222223567999999999999999999 899999
Q ss_pred eCCceeEEcCC
Q 009076 316 FEGAPVKVRRP 326 (544)
Q Consensus 316 l~g~~l~v~~~ 326 (544)
|.|+.|.|.++
T Consensus 93 ~~Gr~i~v~~s 103 (104)
T 1jmt_A 93 FNGQPIHAELS 103 (104)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEEc
Confidence 99999999763
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=8.3e-10 Score=106.74 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=60.5
Q ss_pred hccceEEEcC--CCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC-
Q 009076 242 RHARRVYVGG--LPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE- 317 (544)
Q Consensus 242 ~~~~~l~V~n--Lp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~- 317 (544)
.+.++|||+| |+..+|+++|+++|++||.| ..+.+..++|||||+|.+.++|++|+ .|||..+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V------------~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLV------------DALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCE------------EEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCe------------EEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 3467899999 57899999999999999964 44555568999999999999999999 99998873
Q ss_pred --Cc--eeEEcCC
Q 009076 318 --GA--PVKVRRP 326 (544)
Q Consensus 318 --g~--~l~v~~~ 326 (544)
|+ .|.|.+.
T Consensus 84 ~~g~~~~ly~~~~ 96 (345)
T 3tht_A 84 DLGQKITLYLNFV 96 (345)
T ss_dssp TTSCEEECEEEEC
T ss_pred ccCCceEEEEEEe
Confidence 44 5677654
No 373
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.9e-09 Score=99.35 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=60.4
Q ss_pred CcHHHHHHHHHhcCCceEEEEccCC----CCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 376 FTEAQIRELLESFGPLRGFDLVKDR----ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 376 ~~ee~l~~~f~~~G~i~~v~i~~~~----~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
..+++|.++|++||.|..+.|+.+. .++.++|++||+|.+.++|.+|+..|||++|+|+.|.|.|+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 4578999999999999999998553 35588999999999999999999999999999999999998
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.1e-09 Score=84.53 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=56.3
Q ss_pred ceEEEcCCC-------CCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009076 245 RRVYVGGLP-------PTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 316 (544)
Q Consensus 245 ~~l~V~nLp-------~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l 316 (544)
.+|.|.-.. ..+++++|+++|++||.|..+. | .+.++|||||+|.+.++|..|+ .++ .+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~-------i----~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~ 77 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLV-------L----SSKKPGTAVVEFATVKAAELAVQNEV--GL 77 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEE-------E----ESSSSSEEEEEESCHHHHHHHHHTCC--BC
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEE-------E----ccCCCCEEEEEECCHHHHHHHHHhcC--CC
Confidence 345555544 4689999999999999764432 1 2578999999999999999999 544 46
Q ss_pred CCceeEEcCCCCCC
Q 009076 317 EGAPVKVRRPSDYN 330 (544)
Q Consensus 317 ~g~~l~v~~~~~~~ 330 (544)
.|++|.|.|+....
T Consensus 78 ~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 VDNPLKISWLEGQP 91 (100)
T ss_dssp SSSBCEEECSSCCC
T ss_pred CCCeEEEEEccCCC
Confidence 89999999876543
No 375
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.92 E-value=5.3e-10 Score=90.97 Aligned_cols=79 Identities=18% Similarity=0.070 Sum_probs=63.7
Q ss_pred hccceEEEcCCC--CCC---cHHHHHHHHHHHHHhhcCCCCCCCCceEEEe----ecCCCcEEEEEecCHHHHHHHH-Hc
Q 009076 242 RHARRVYVGGLP--PTA---NEQSVATFFSQVMAAIGGNTAGPGDAVVNVY----INHEKKFAFVEMRSVEEASNAM-AL 311 (544)
Q Consensus 242 ~~~~~l~V~nLp--~~~---te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~----~~~~kg~afV~f~~~~~A~~Al-~l 311 (544)
.+++.|+|.|+- ..+ .+++|++.|++||.|..+. ++.+.. .+.++|||||+|.+.++|.+|+ .|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~------I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEE------EEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEE------EeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 468899999993 222 4789999999999987764 233322 1346799999999999999999 99
Q ss_pred CCceeCCceeEEcCC
Q 009076 312 DGIIFEGAPVKVRRP 326 (544)
Q Consensus 312 ~~~~l~g~~l~v~~~ 326 (544)
||..|.|+.|.|.+.
T Consensus 92 nGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 92 NGRWFAGRKVVAEVY 106 (118)
T ss_dssp TTCEETTEECEEEEE
T ss_pred CCCEECCcEEEEEEc
Confidence 999999999999864
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=1e-08 Score=77.39 Aligned_cols=68 Identities=10% Similarity=0.159 Sum_probs=58.9
Q ss_pred CEEEEcCCCCC-----CcH----HHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeE
Q 009076 365 DRIFVGGLPYY-----FTE----AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT 435 (544)
Q Consensus 365 ~~l~v~nl~~~-----~~e----e~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~ 435 (544)
.+|+|..++.. +-. .+|.+.|..||.|..++|+.+ -+||+|.+.++|.+||. |||..++|+.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 48888877643 222 579999999999999999988 39999999999999997 9999999999
Q ss_pred EEEEEc
Q 009076 436 LTVRRA 441 (544)
Q Consensus 436 i~v~~~ 441 (544)
|+|++.
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999875
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.1e-07 Score=72.90 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=67.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhc-----CCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESF-----GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 438 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v 438 (544)
..+|-|-|||..++...|+.++++| |.|..|.+..+ -+=|+|+|.+...|-+|..+|+|..|.|+.|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4589999999999999999999999 99999999988 567999999999999999999999999999999
Q ss_pred EEc
Q 009076 439 RRA 441 (544)
Q Consensus 439 ~~~ 441 (544)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 765
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.6e-07 Score=75.62 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=59.5
Q ss_pred cceEEEcCCCCC-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecC-HHHHHHHH-HcC--CceeCC
Q 009076 244 ARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS-VEEASNAM-ALD--GIIFEG 318 (544)
Q Consensus 244 ~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~-~~~A~~Al-~l~--~~~l~g 318 (544)
.+-|+|+||+.. ++.++|+++|++||+ |..+.+......|||.|.+ ..+|..|+ ++| +..|.|
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~------------V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGE------------IKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCC------------EEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 567999999999 999999999999985 5566666666689999999 88999999 884 788999
Q ss_pred ceeEEcC
Q 009076 319 APVKVRR 325 (544)
Q Consensus 319 ~~l~v~~ 325 (544)
..+.+..
T Consensus 86 ~~~~~ev 92 (121)
T 1owx_A 86 KEVTWEV 92 (121)
T ss_dssp SSEEEEE
T ss_pred cEEEEEE
Confidence 8888753
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=4.4e-07 Score=68.20 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=52.5
Q ss_pred ceEEEcCCC----CCCcH----HHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCcee
Q 009076 245 RRVYVGGLP----PTANE----QSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIF 316 (544)
Q Consensus 245 ~~l~V~nLp----~~~te----~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l 316 (544)
.+|+|.-++ ...-. .+|.+.|.+||.| +.+.+-..+ +||+|.+.++|.+|+.|||..+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~V------------i~vr~~~d~--~fVtF~d~~sAlaAi~mnG~~v 73 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEV------------ILIRFVEDK--MWVTFLEGSSALNVLSLNGKEL 73 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCE------------EEEEECSSS--EEEEESSHHHHHHGGGGTTCEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCe------------EEEEEecCC--EEEEECChHHHHHHHhcCCeEe
Confidence 367777766 23333 5788899999864 333333333 8999999999999999999999
Q ss_pred CCceeEEcCCC
Q 009076 317 EGAPVKVRRPS 327 (544)
Q Consensus 317 ~g~~l~v~~~~ 327 (544)
.|+.|+|+...
T Consensus 74 ~Gr~LkV~lkt 84 (91)
T 2dnr_A 74 LNRTITIALKS 84 (91)
T ss_dssp TTEEEEEEECC
T ss_pred CCeEEEEEeCC
Confidence 99999998644
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=9.4e-07 Score=66.69 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=52.7
Q ss_pred cceEEEcCCCCC-----CcH----HHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCc
Q 009076 244 ARRVYVGGLPPT-----ANE----QSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGI 314 (544)
Q Consensus 244 ~~~l~V~nLp~~-----~te----~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~ 314 (544)
..+|+|.-++.. +.. .+|.+.|.+||.|+ .+.+-..+ +||+|.+.++|.+||.|+|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi------------lvr~v~d~--~fVtF~d~~sAl~AI~ldG~ 80 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV------------LVRINQGQ--MLVTFADSHSALSVLDVDGM 80 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS------------EEEEETTE--EEEECSCSHHHHHHHHGGGS
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE------------EEEEecCc--EEEEEcChHHHHHHHhcCCe
Confidence 347899887643 222 56888999999653 22222222 99999999999999999999
Q ss_pred eeCCceeEEcCC
Q 009076 315 IFEGAPVKVRRP 326 (544)
Q Consensus 315 ~l~g~~l~v~~~ 326 (544)
.+.|+.|+|++.
T Consensus 81 ~v~Gr~L~V~~k 92 (95)
T 1ufw_A 81 KVKGRAVKISGP 92 (95)
T ss_dssp EETTEEEEEECC
T ss_pred eeCCeEEEEecc
Confidence 999999999863
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.8e-06 Score=63.96 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=64.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeCCcee
Q 009076 243 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 321 (544)
Q Consensus 243 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l 321 (544)
..++|-+-|||..++...|+.|++++-.|. .+.+.++..-...+=|+|+|.+...|-+|. +|+|..|.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~-------~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHIN-------EKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCC-------TTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccC-------ccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 368899999999999999999999992211 113666777777888999999999999999 999999999999
Q ss_pred EEc
Q 009076 322 KVR 324 (544)
Q Consensus 322 ~v~ 324 (544)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 996
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.2e-05 Score=61.36 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=59.8
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCCceeEE
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 323 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g~~l~v 323 (544)
.++|.|.|||+.+.++.|.-+|+.-- ..-|+.|..+.... +-|+|.|.+.+.|+..|+...+.|.+..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~r-------rsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRR-------RSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTT-------TTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCC-------cCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 56899999999999999999999620 01245677776655 7899999999999999988789999999999
Q ss_pred cC
Q 009076 324 RR 325 (544)
Q Consensus 324 ~~ 325 (544)
..
T Consensus 79 ~P 80 (104)
T 2dhx_A 79 RP 80 (104)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=1.3e-05 Score=61.64 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCc-----HHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEE
Q 009076 363 GPDRIFVGGLPYYFT-----EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 437 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~-----ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~ 437 (544)
.+++|+|.||+..+- .+.++++|..|+.+.....++. =.-+.|.|.+.++|.+|...||+..|.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 456899999987652 3688999999999888877765 22578999999999999999999999999999
Q ss_pred EEEcC
Q 009076 438 VRRAN 442 (544)
Q Consensus 438 v~~~~ 442 (544)
|-|++
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99995
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.99 E-value=2.6e-06 Score=78.09 Aligned_cols=65 Identities=22% Similarity=0.069 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEee----cCCCcEEEEEecCHHHHHHHH-HcCCceeCCceeEEcCC
Q 009076 256 ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI----NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRP 326 (544)
Q Consensus 256 ~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~kg~afV~f~~~~~A~~Al-~l~~~~l~g~~l~v~~~ 326 (544)
-.+++|.+.|++||.|..+. ++.+... +.++|++||+|.+.++|.+|+ .|||..|.|+.|.+.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~------v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVI------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEE------EEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEE------EecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 36789999999999887654 2222222 267899999999999999999 99999999999999864
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.51 E-value=0.00028 Score=53.42 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=56.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCC--cceEEEEEEcChHHHHHHHHHhCCCee
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN--SKGYAFCVYQDLSVTDIACAALNGIKM 431 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~e~A~~A~~~l~g~~~ 431 (544)
++|.|++||+.+||+++.+.++.+..+.....+..+.+.. .-.-|||.|.+.+++..-...++|..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 3799999999999999999999998887777766543322 235699999999999999999999988
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=0.00066 Score=53.75 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=58.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCC-eEEEEEEcC
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD-KTLTVRRAN 442 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g-~~i~v~~~~ 442 (544)
..|.|-+.|+.. -..|...|++||.|........ ..+..|.|.+..+|++|| ..||..|+| -.|-|..+.
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 479999999874 6788899999999998887322 468999999999999999 569999974 778888873
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.42 E-value=0.00072 Score=50.92 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=46.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC
Q 009076 363 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 427 (544)
Q Consensus 363 ~~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 427 (544)
...+++| ++|..+...||.++|++||.| .|..+.+ ..|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3346777 999999999999999999954 4666665 289999999999999998763
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0041 Score=47.52 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=57.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHh-----cCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLES-----FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 439 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~-----~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~ 439 (544)
.+|.|.|||+.+.++.|.-+|+. -|.|..|.... +-|+|+|.+.+.|+..| +-..+.|.|..|.|.
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQLSLR 79 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEEE
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEEEEE
Confidence 58999999999999999999997 35688887754 37899999999999887 334678888999997
Q ss_pred Ec
Q 009076 440 RA 441 (544)
Q Consensus 440 ~~ 441 (544)
-.
T Consensus 80 P~ 81 (104)
T 2dhx_A 80 PA 81 (104)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0024 Score=49.07 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=59.4
Q ss_pred cceEEEcCCCCCC-cH----HHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 244 ARRVYVGGLPPTA-NE----QSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 244 ~~~l~V~nLp~~~-te----~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
..+|+|.||+..+ .. ..++++|..|++ +.....-++-.-..|.|.++++|.+|- .|++..+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~------------~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDK------------DTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCS------------SCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCc------------CcceeecCcceEEEEEeCChHHHHHHHHHhccceec
Confidence 4579999999877 33 466788888864 445666777778899999999999999 99999999
Q ss_pred CceeEEcCCC
Q 009076 318 GAPVKVRRPS 327 (544)
Q Consensus 318 g~~l~v~~~~ 327 (544)
|+.|+|-++.
T Consensus 73 g~~~r~YFgq 82 (104)
T 1wey_A 73 GKEMKLYFAQ 82 (104)
T ss_dssp TEECEEECCC
T ss_pred CceeEEEecC
Confidence 9999998765
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0017 Score=49.17 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=44.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 427 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 427 (544)
+++| ++|..+.-.||.++|++||. ..|..+.+ ..|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4666 99999999999999999993 34666655 389999999999999998764
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.78 E-value=0.0026 Score=51.05 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=55.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceE-EEEccCC------------CCC-CcceEEEEEEcChHHHHHHHHHhCCCee
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDR------------ETG-NSKGYAFCVYQDLSVTDIACAALNGIKM 431 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~-v~i~~~~------------~~g-~~~g~afV~f~~~e~A~~A~~~l~g~~~ 431 (544)
.|.|-+.|+. ....|.+.|++||.|.. +.+.... -.+ ...++..|+|.+..+|.+|| ..||..|
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAVF 86 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCEE
T ss_pred EEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeEe
Confidence 6888899766 45567799999999876 3222110 000 12468899999999999999 6699999
Q ss_pred CCeEEEEEEc
Q 009076 432 GDKTLTVRRA 441 (544)
Q Consensus 432 ~g~~i~v~~~ 441 (544)
+|..|-|..+
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 9998889887
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.0021 Score=48.84 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=54.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCC--cceEEEEEEcChHHHHHHHHHhCCCeeC---C--eEEE
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN--SKGYAFCVYQDLSVTDIACAALNGIKMG---D--KTLT 437 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~e~A~~A~~~l~g~~~~---g--~~i~ 437 (544)
-+|.|+.||+.+||+++.+.++++-.+.....+..+.+.. .-.-|||.|.+.++...-...++|..|- | -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 3799999999999999888887765544433333322211 1245899999999999999999999882 2 2345
Q ss_pred EEEc
Q 009076 438 VRRA 441 (544)
Q Consensus 438 v~~~ 441 (544)
|.||
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6666
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.0077 Score=47.67 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=56.8
Q ss_pred hccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHHHcCCceeCC-ce
Q 009076 242 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG-AP 320 (544)
Q Consensus 242 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al~l~~~~l~g-~~ 320 (544)
....-|.|-|+|+.. ...|...|++||. |+..........-.|.|.+..+|++||..||..|.| ..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~------------Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~m 88 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGN------------ILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIM 88 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSC------------EEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCc------------EEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEE
Confidence 346679999999986 5667788999996 444445556789999999999999999999999985 55
Q ss_pred eEEcCC
Q 009076 321 VKVRRP 326 (544)
Q Consensus 321 l~v~~~ 326 (544)
|-|.+.
T Consensus 89 IGV~p~ 94 (119)
T 1wwh_A 89 IGVKPC 94 (119)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 666543
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.65 E-value=0.015 Score=43.89 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=41.9
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-Hc
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL 311 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l 311 (544)
...++| ++|+.+.-.||.++|+.||.| .|.-+. -..|||.|.+++.|..|| .+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv----------~I~Wid----DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI----------QISWID----DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC----------CCEEEE----TTEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE----------EEEEEc----CCeEEEEecCHHHHHHHHHhc
Confidence 345666 999999999999999999843 233332 357999999999999999 44
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.32 E-value=0.016 Score=43.68 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=46.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC------CCcEEEEEecCHHHHHHHH-HcCCceeC
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH------EKKFAFVEMRSVEEASNAM-ALDGIIFE 317 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~A~~Al-~l~~~~l~ 317 (544)
.+|.|.+||+.+|++++.+.+..+..+ ....-.-|. .-..|||.|.+.+++.... .++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~----------d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEH----------DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCE----------EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccc----------eEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999888865321 011111122 1247999999999999999 89998874
Q ss_pred C
Q 009076 318 G 318 (544)
Q Consensus 318 g 318 (544)
+
T Consensus 72 D 72 (91)
T 1uw4_A 72 D 72 (91)
T ss_dssp C
T ss_pred c
Confidence 4
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.59 E-value=0.012 Score=44.44 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=41.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 312 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~ 312 (544)
..++| ++|+.+.-.||.++|++||.| .|.- ++ -..|||.|.+++.|..|| .+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv----------~I~W--id--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI----------QISW--ID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE----------EEEE--EE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE----------EEEE--Ec--CCeEEEEecCHHHHHHHHHhcc
Confidence 34666 999999999999999999842 2322 22 357999999999999999 453
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.43 E-value=0.034 Score=44.63 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=53.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEE------Eeec--CCCcEEEEEecCHHHHHHHHHcCCcee
Q 009076 245 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVN------VYIN--HEKKFAFVEMRSVEEASNAMALDGIIF 316 (544)
Q Consensus 245 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~------~~~~--~~kg~afV~f~~~~~A~~Al~l~~~~l 316 (544)
.-|.|-|.|+..+ ..|.+.|++||.|+.-........... .... ...+...|.|.+..+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 3588889977765 556778999998765221100000000 0000 135678999999999999999999999
Q ss_pred CCceeEEcCC
Q 009076 317 EGAPVKVRRP 326 (544)
Q Consensus 317 ~g~~l~v~~~ 326 (544)
.|.-|-|.+.
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 9987777654
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.42 E-value=0.023 Score=56.77 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=41.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHH
Q 009076 365 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 424 (544)
Q Consensus 365 ~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~ 424 (544)
+.|+|. .|..+++.+|.+.|++||.|.++.+..+. .-||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 479997 78899999999999999999999998763 3699999999999886653
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.50 E-value=0.026 Score=56.42 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=44.5
Q ss_pred HhhhccceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCc-EEEEEecCHHHHHHHHHcCCcee
Q 009076 239 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK-FAFVEMRSVEEASNAMALDGIIF 316 (544)
Q Consensus 239 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg-~afV~f~~~~~A~~Al~l~~~~l 316 (544)
-..+..++|+|. .|..+++.+|.++|++||+| .++.+...+| ||.|||.+.+++..++...+...
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i------------~~~~~~~~~g~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPI------------NNHFFYESFGLYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCC------------CCEEEECSSSEEEEEECC---CCHHHHSSCCCCC
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCc------------ceEEEEccCCeEEEEEeCCHHHHHHHHhccCCCc
Confidence 345678899998 79999999999999999975 4444445544 99999999999998884434333
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.48 E-value=0.053 Score=41.12 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=45.5
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecC-CCcEEEEEecCHHHHHHHH-HcCCceeCC
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEG 318 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~A~~Al-~l~~~~l~g 318 (544)
+-+|.|..||+.+|++++.+.+..+-.+ .....-+|..- .+. .-..|||.|.+.++..... .++|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~-d~~~fv~G~~s----~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH-DYFEFFAADLS----LYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE-EECCCCCCCSS----SCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc-ceEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4579999999999999988776653111 00000001100 111 1246899999999999999 899987743
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.59 E-value=2.2 Score=43.46 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=45.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhC
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 427 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 427 (544)
+.+++|+ +|..+...+|.++|+.||.| .|..+.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3467776 89999999999999999954 5555544 379999999999999998885
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.43 E-value=48 Score=24.06 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=51.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC-------eeCCeEE
Q 009076 364 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI-------KMGDKTL 436 (544)
Q Consensus 364 ~~~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~-------~~~g~~i 436 (544)
.+.|.|-|+|..+-..++.-.....|---.+..+ .|.|.|.|.+.++...|+..|-+. .+.|...
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 4578899999999888888787777776666654 357999999999999999887221 3456655
Q ss_pred EEE
Q 009076 437 TVR 439 (544)
Q Consensus 437 ~v~ 439 (544)
.|-
T Consensus 84 dvi 86 (129)
T 4eyt_A 84 DVI 86 (129)
T ss_dssp EEE
T ss_pred eee
Confidence 553
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=49.61 E-value=21 Score=36.17 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=41.6
Q ss_pred cceEEEcCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCcEEEEEecCHHHHHHHH-HcC
Q 009076 244 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 312 (544)
Q Consensus 244 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~kg~afV~f~~~~~A~~Al-~l~ 312 (544)
...++|+ +|..+...+|.++|+.||.+ .| .. -+...|||.|.+.+.|..++ .++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v----------~V--~w--iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI----------QI--SW--IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC----------EE--EE--CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE----------EE--EE--EcCCeEEEEECCHHHHHHHHHHHH
Confidence 3466666 99999999999999999742 12 12 23467999999999999999 664
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.51 E-value=96 Score=21.61 Aligned_cols=57 Identities=7% Similarity=0.112 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHhcCC-----ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCCeeCCeEEEEEEc
Q 009076 376 FTEAQIRELLESFGP-----LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 441 (544)
Q Consensus 376 ~~ee~l~~~f~~~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~i~v~~~ 441 (544)
+..-+|..++..-+. |-.|.|... +.||+-.... |..++..|++..+.|+.+.|..+
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 555667776665444 444566433 7888887654 56788899999999999998876
No 405
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=35.33 E-value=1e+02 Score=20.87 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI 429 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~ 429 (544)
++.|.+|.-.-....|...+.. ..|..+.+-.. .+.+.|.|.+.++...|+..+ |+
T Consensus 8 ~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~-Gy 63 (73)
T 3fry_A 8 VLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA-GY 63 (73)
T ss_dssp EEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT-TC
T ss_pred EEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc-CC
Confidence 6889999888888999999999 88888887554 678889998555666666543 44
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.92 E-value=82 Score=26.43 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEEEcCCCCC---------CcHHHHHHHH--HhcCCceEEEEccCCCCCCcceEEEEEEcChH
Q 009076 366 RIFVGGLPYY---------FTEAQIRELL--ESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 417 (544)
Q Consensus 366 ~l~v~nl~~~---------~~ee~l~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e 417 (544)
+++|-|+|.. .....|++.| ..|.++.-..+ ..+ .| +.|+|.|+|.+--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~-~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY-LG-HSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS-SB-EEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC-CC-CceeEEEEecCCh
Confidence 6788898862 2347899977 89988764444 432 23 5889999998754
No 407
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=28.93 E-value=83 Score=23.84 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHh-hcCCceee-ccCce-EEEEecCCCCCCCceEEEE
Q 009076 498 EEILEDMRQEGG-KFAFCSPT-FCYKE-SGLIYTDRRLHNPQFVYFY 541 (544)
Q Consensus 498 ~~~~~~l~~~f~-~fG~V~~i-~~~g~-a~V~f~~~~~A~a~~~~~~ 541 (544)
++|...|+.+|. +||..=.+ .|..+ .||+++ ...|++||
T Consensus 49 kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe-----~~~fiyF~ 90 (102)
T 1yo3_A 49 KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHE-----TKNFIYFY 90 (102)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESC-----CCEEEEEE
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEe-----CCcEEEEE
Confidence 467778999997 79998777 33333 355554 23455555
No 408
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.10 E-value=77 Score=24.21 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=26.3
Q ss_pred ceEEEEccCCCCCCcceEEEEEEcChHHHHHHHHHhCCC
Q 009076 391 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI 429 (544)
Q Consensus 391 i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~ 429 (544)
|.++..+.. -+||.|||=.+..+...|+..+.+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 777766544 3899999999999999988666443
No 409
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.75 E-value=1.4e+02 Score=21.14 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=37.3
Q ss_pred cEEEEEecCHHHHHHHH----HcCCceeCCceeEEcCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEE
Q 009076 293 KFAFVEMRSVEEASNAM----ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIF 368 (544)
Q Consensus 293 g~afV~f~~~~~A~~Al----~l~~~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 368 (544)
-|.++.|.....+-+-+ .+|...|.--.+++..+..|. ++|
T Consensus 6 ~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~YE-----------------------------------~m~ 50 (77)
T 3zzp_A 6 YTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYE-----------------------------------VNI 50 (77)
T ss_dssp TEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEEE-----------------------------------EEE
T ss_pred EEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCceE-----------------------------------EEE
Confidence 47889997765555544 466666644444443322221 566
Q ss_pred EcCCCCCCcHHHHHHHHHhcC
Q 009076 369 VGGLPYYFTEAQIRELLESFG 389 (544)
Q Consensus 369 v~nl~~~~~ee~l~~~f~~~G 389 (544)
| |.++++++++..++++|-
T Consensus 51 I--l~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 51 V--LNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp E--ECTTCCHHHHHHHHHHHH
T ss_pred E--ECCCCCHHHHHHHHHHHH
Confidence 6 567788988888887764
No 410
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.77 E-value=1.9e+02 Score=18.97 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=38.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCCceEEEEccCCCCCCcceEEEEEEcC---hHHHHHHHHH
Q 009076 366 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD---LSVTDIACAA 425 (544)
Q Consensus 366 ~l~v~nl~~~~~ee~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~e~A~~A~~~ 425 (544)
++.|.+|.-.-....|...+.....|..+.+-.. .+.+.|.|.. .++...|+..
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 5788888877778899999999888888877655 4577888843 3344455543
Done!