BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009077
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/533 (72%), Positives = 448/533 (84%), Gaps = 1/533 (0%)
Query: 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVA 66
+EFIFRSKLPDIYIP +LPLH+Y EN+S + +PC+ING GDVYTYADVELT+R+VA
Sbjct: 4 QEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVA 63
Query: 67 AGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXX 126
+GL+K+G+Q+GDVIML L + P+FV AFLGAS+ GA T ANPF TP E
Sbjct: 64 SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123
Query: 127 XXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVA 186
Y +KV+D + +++ +D P+ CLHFSEL TQADENE P V I+PDDVVA
Sbjct: 124 LLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSEL-TQADENEAPQVDISPDDVVA 182
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVL 246
LPYSSGTTGLPKGVMLTHKGL+TSVAQQVDG+NPNLY H EDVILCVLP+FHIY+LNS++
Sbjct: 183 LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIM 242
Query: 247 LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTV 306
LC LRVGA ILIM KF+I L+ L++KYKV++AP VPP+++++AKS D+DK+D+SS+R +
Sbjct: 243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMI 302
Query: 307 MSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVR 366
SG AP+GKELED VRAK P A+LGQGYGMTEAGPVL+MCLAFAKEPF+IK GACGTVVR
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362
Query: 367 NAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYID 426
NAEMKIVDP+TG SLPRNQ GEICIRG QIMKGYLND EAT TIDKEGWLHTGDIGYID
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422
Query: 427 DDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486
DDDELFIVDRLKELIK+KGFQVAPAELEA+LIAHP ISDAAVV +KDE AGEVPVAFVV+
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 487 SNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539
S S+ TEDEIKQYISKQV+FYKRI RVFF ++IPKAPSGKILRK+L+ KLA
Sbjct: 483 SEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/546 (70%), Positives = 446/546 (81%), Gaps = 7/546 (1%)
Query: 2 EAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELT 61
++ ++ + IFRSKLPDIYIPNHL LH Y F+NIS+FA +PC+INGPTG VYTY+DV +
Sbjct: 38 QSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVI 97
Query: 62 SRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXX 121
SR++AA KLGV + DV+MLLL NCP+FV +FL AS+ GAT+T ANPF+TP E
Sbjct: 98 SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAK 157
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVTID-----PPPENCLHFSELITQADENE--I 174
Y DK++ L G IV ID P PE CL F+EL E I
Sbjct: 158 ASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217
Query: 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVL 234
+V+I+PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY H +DVILCVL
Sbjct: 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVL 277
Query: 235 PLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD 294
P+FHIY+LNS++LC LRVGAAILIM KF+I L+EL+Q+ KVTVAP VPPIVLA+AKS +
Sbjct: 278 PMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337
Query: 295 VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPF 354
+KYD+SSIR V SGAAP+GKELEDAV AK P+AKLGQGYGMTEAGPVL+M L FAKEPF
Sbjct: 338 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 397
Query: 355 EIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414
+KSGACGTVVRNAEMKIVDPDTG SL RNQ GEICIRG QIMKGYLN+ AT TIDK+
Sbjct: 398 PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKD 457
Query: 415 GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDE 474
GWLHTGDIG IDDDDELFIVDRLKELIK+KGFQVAPAELEA+LI HP+I+D AVV MK+E
Sbjct: 458 GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEE 517
Query: 475 AAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLR 534
AAGEVPVAFVV+S S+++ED++KQ++SKQVVFYKRIN+VFFT+SIPKAPSGKILRKDLR
Sbjct: 518 AAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 577
Query: 535 TKLAAG 540
KLA G
Sbjct: 578 AKLANG 583
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 278 bits (711), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 178/498 (35%), Positives = 262/498 (52%), Gaps = 24/498 (4%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 231
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 232 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 286
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 346
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGY 400
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM GY
Sbjct: 347 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 401
Query: 401 LNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH 460
+N+ EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG+QVAPAELE++L+ H
Sbjct: 402 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461
Query: 461 PNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRI-NRVFFTDS 519
PNI DA V + D+ AGE+P A VV +G +TE EI Y++ QV K++ V F D
Sbjct: 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDE 521
Query: 520 IPKAPSGKILRKDLRTKL 537
+PK +GK+ + +R L
Sbjct: 522 VPKGLTGKLDARKIREIL 539
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 278 bits (711), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 178/498 (35%), Positives = 262/498 (52%), Gaps = 24/498 (4%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 231
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 232 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 286
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 346
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGY 400
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM GY
Sbjct: 347 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 401
Query: 401 LNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH 460
+N+ EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG+QVAPAELE++L+ H
Sbjct: 402 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461
Query: 461 PNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRI-NRVFFTDS 519
PNI DA V + D+ AGE+P A VV +G +TE EI Y++ QV K++ V F D
Sbjct: 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDE 521
Query: 520 IPKAPSGKILRKDLRTKL 537
+PK +GK+ + +R L
Sbjct: 522 VPKGLTGKLDARKIREIL 539
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 278 bits (710), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 178/498 (35%), Positives = 262/498 (52%), Gaps = 24/498 (4%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 177 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 236
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 237 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 291
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 292 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 351
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGY 400
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM GY
Sbjct: 352 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 406
Query: 401 LNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH 460
+N+ EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG+QVAPAELE++L+ H
Sbjct: 407 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 466
Query: 461 PNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRI-NRVFFTDS 519
PNI DA V + D+ AGE+P A VV +G +TE EI Y++ QV K++ V F D
Sbjct: 467 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDE 526
Query: 520 IPKAPSGKILRKDLRTKL 537
+PK +GK+ + +R L
Sbjct: 527 VPKGLTGKLDARKIREIL 544
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 177/495 (35%), Positives = 261/495 (52%), Gaps = 18/495 (3%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ L + D N
Sbjct: 177 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGN-Q 235
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVP 283
+ + IL V+P H + + + L L G +++M +F+ + +Q YK+ A VP
Sbjct: 236 IAPDTAILSVVPFHHGFGMFTTL-GYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 294
Query: 284 PIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL 343
+ +AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE +
Sbjct: 295 TLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI 354
Query: 344 SMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLND 403
+ +P GA G VV E K+VD DTG +L NQ GE+ +RG IM GY+N+
Sbjct: 355 LITPKGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNN 409
Query: 404 REATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNI 463
EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG QVAPAELE++L+ HPNI
Sbjct: 410 PEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNI 469
Query: 464 SDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRI-NRVFFTDSIPK 522
DA V + D+ AGE+P A VV +G +TE EI Y++ QV K++ V F D +PK
Sbjct: 470 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPK 529
Query: 523 APSGKILRKDLRTKL 537
+GK+ + +R L
Sbjct: 530 GLTGKLDARKIREIL 544
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/354 (44%), Positives = 210/354 (59%), Gaps = 11/354 (3%)
Query: 190 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCA 249
SSG+TGLPKGV LTHK + + D N + + IL V+P H + + + L
Sbjct: 232 SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQII-PDTAILTVIPFHHGFGMFTTL-GY 289
Query: 250 LRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSG 309
L G I++M +F+ + +Q YK+ A VP + AKS VDKYD+S++ + SG
Sbjct: 290 LTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASG 349
Query: 310 AAPMGKELEDAV--RAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRN 367
AP+ KE+ +AV R KLP + QGYG+TE + + + K GACG VV
Sbjct: 350 GAPLAKEVGEAVAKRFKLPGIR--QGYGLTET----TSAIIITPRGRDDKPGACGKVVPF 403
Query: 368 AEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDD 427
KIVD DTG +L NQ GE+C++G IMKGY+N+ EAT IDK+GWLH+GDI Y D
Sbjct: 404 FSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDK 463
Query: 428 DDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRS 487
D FIVDRLK LIK+KG+QV PAELE++L+ HP I DA V + D AGE+P A VV
Sbjct: 464 DGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLE 523
Query: 488 NGSKITEDEIKQYISKQVVFYKRI-NRVFFTDSIPKAPSGKILRKDLRTKLAAG 540
G +TE E+ Y++ QV KR+ V F D +PK +GKI + +R L G
Sbjct: 524 EGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKIDARKIREILMMG 577
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 268 bits (684), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 177/503 (35%), Positives = 261/503 (51%), Gaps = 24/503 (4%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
G +MKGY+N+ EAT+ ID+EGWLHTGDIGY D++ FIVDRLK LIK+KG+QV PAE
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRI- 511
LE++L+ HP+I DA V + D AGE+P A VV +G +TE E+ Y++ QV KR+
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLR 515
Query: 512 NRVFFTDSIPKAPSGKILRKDLR 534
V F D +PK +GKI + +R
Sbjct: 516 GGVRFVDEVPKGLTGKIDGRAIR 538
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 178/506 (35%), Positives = 262/506 (51%), Gaps = 24/506 (4%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
G +MKGY+N+ EAT+ ID+EGWLHTGDIGY D++ FIVDRLK LIK+KG+QV PAE
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRI- 511
LE++L+ HP+I DA V + D AGE+P A VV +G +TE E+ Y++ QV KR+
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLR 515
Query: 512 NRVFFTDSIPKAPSGKILRKDLRTKL 537
V F D +PK +GKI + +R L
Sbjct: 516 GGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 177/503 (35%), Positives = 261/503 (51%), Gaps = 24/503 (4%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
G +MKGY+N+ EAT+ ID+EGWLHTGDIGY D++ FIVDRLK LIK+KG+QV PAE
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRI- 511
LE++L+ HP+I DA V + D AGE+P A VV +G +TE E+ Y++ QV KR+
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLR 515
Query: 512 NRVFFTDSIPKAPSGKILRKDLR 534
V F D +PK +GKI + +R
Sbjct: 516 GGVRFVDEVPKGLTGKIDGRAIR 538
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 156/500 (31%), Positives = 256/500 (51%), Gaps = 32/500 (6%)
Query: 48 PTGDV-YTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTT 106
P+ DV TYA + + + A L+ LG+ KGD + LL+ N +F F GA+ +GA +
Sbjct: 38 PSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 97
Query: 107 ANPFYTPPEXXXXXXXXXXXXXXXXXVYN-------DKVRDLSEHHGARIVTIDPPPENC 159
N PE +Y D +R ++ G I
Sbjct: 98 INTRLAAPEVSFILSDSGSKVV----IYGAPSAPVIDAIRAQADPPGTVTDWI-----GA 148
Query: 160 LHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 219
+E + A +E PAV+ DD + + Y+SGTTG PKGV+ TH+ SV
Sbjct: 149 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHE----SVHSAASSWA 203
Query: 220 PNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVA 279
+ + D +L LP+FH+ +L +V+ A+R G ++ M +FD K+ L+ + +V +
Sbjct: 204 STIDVRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIG 262
Query: 280 PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339
VP I+ + + + + D R ++G APM + L AK + ++ QGY +TE+
Sbjct: 263 GAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTES 320
Query: 340 GPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
++ L+ E K+G+ G ++ V D G+ + + GE+ I+ ++K
Sbjct: 321 CGGGTLLLS---EDALRKAGSAGRATMFTDVA-VRGDDGV-IREHGEGEVVIKSDILLKE 375
Query: 400 YLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIA 459
Y N EAT D GW TGDIG IDD+ L+I DRLK++I G V PAE+E+++I
Sbjct: 376 YWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIG 434
Query: 460 HPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDS 519
P +S+ AV+ + DE GE+ A VV ++ ++++E +I +Y ++ YK +V F ++
Sbjct: 435 VPGVSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEA 493
Query: 520 IPKAPSGKILRKDLRTKLAA 539
IP+ P+GKIL+ LR + +A
Sbjct: 494 IPRNPTGKILKTVLREQYSA 513
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 169/554 (30%), Positives = 265/554 (47%), Gaps = 36/554 (6%)
Query: 9 EFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIING----PTG--DVYTYADVELTS 62
E ++ P +Y P + L +F ++ II+ P+ + + ++ +
Sbjct: 4 ELKYKIGFPSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVT 62
Query: 63 RKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXX 122
+K+A+G+S+ GV+KG+ + + + N +V + AT NP Y E
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILND 122
Query: 123 XXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPD 182
+ + + E G V + N L SE+ E+ VK+NP+
Sbjct: 123 SEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSL--SEVXDSGSED-FENVKVNPE 179
Query: 183 DVVAL-PYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241
+ VAL PY+ GTTG PKGV LTH L + Q L D I+ P FH
Sbjct: 180 EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG----LSHXDTIVGCXPXFHSAE 235
Query: 242 LNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPI--VLAVAKSGDVDKYD 299
V L + VG ++ F+ L E ++KYK T + VPP VL YD
Sbjct: 236 FGLVNL-XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD 294
Query: 300 MSSIRTVMSGAAPMGKELED------AVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEP 353
S ++ +GA P+ L + A + P + Q +G TEA P ++ P
Sbjct: 295 WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT-----TNPP 349
Query: 354 FEI-KSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYL-NDREATETTI 411
+ KS G + E+K++ + G L ++GEI IRG I KGY ++E E
Sbjct: 350 LRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWW 409
Query: 412 -DKEG--WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAV 468
D++G + TGD+G+ID++ L DR+KE+IK+KG+ +AP ELEA+L H + D AV
Sbjct: 410 YDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAV 469
Query: 469 VPMKDEAAGEVPVAFVVR--SNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSG 526
+ DE AGEVP AF+V K+ E++I +++ +++ YKR+ V F + +P+ SG
Sbjct: 470 IGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASG 529
Query: 527 KILRKDLRTKLAAG 540
K+LR+ LR K A G
Sbjct: 530 KLLRRLLREKEAEG 543
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 146/541 (26%), Positives = 253/541 (46%), Gaps = 36/541 (6%)
Query: 16 LPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVY--TYADVELTSRKVAAGLSKLG 73
P + L L + + F + + TG+V+ TYA+V +R++ GL LG
Sbjct: 9 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 68
Query: 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXV 133
V GD + L N + + A+ +GA TANP +P E +
Sbjct: 69 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE----IAYILNHAEDKVLL 124
Query: 134 YNDKVRDLSEHHGARIVTI-------DPPPENCLHFSELITQADENEIPAVKINPDDVVA 186
++ + L E + T+ + PE L + E + + E V++
Sbjct: 125 FDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE----EADPVRVPERAACG 180
Query: 187 LPYSSGTTGLPKGVMLTHKGLV--TSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS 244
+ Y++GTTGLPKGV+ +H+ LV + A VDG L ++DV+L V+P+FH+ +
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA----LSEKDVVLPVVPMFHVNAWCL 236
Query: 245 VLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIR 304
L +L + D L+EL VT VP + LA+A + + + ++R
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 296
Query: 305 TVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL------SMCLAFAKEPFEIKS 358
++ G + + L R + ++ QGYG+TE PV+ S + ++E
Sbjct: 297 RLVVGGSAAPRSL--IARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 359 GACGTVVRNAEMKIVDPDTGISLPRNQA--GEICIRGAQIMKGYLNDREATETTIDKEGW 416
G + +++ D + G +P++ GE+ ++G I GY + EAT + + +G+
Sbjct: 355 AKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 413
Query: 417 LHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAA 476
TGDI D++ + I DRLK+LIK G ++ +LE L+ HP + +AAVV +
Sbjct: 414 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 473
Query: 477 GEVPVAFVVRSNGSKITEDEIKQYISKQ-VVFYKRINRVFFTDSIPKAPSGKILRKDLRT 535
E P+A VV G K T +E+ +++ K ++ + F + IP+ +GK L++ LR
Sbjct: 474 QERPLAVVV-PRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532
Query: 536 K 536
+
Sbjct: 533 Q 533
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/490 (27%), Positives = 214/490 (43%), Gaps = 15/490 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG KG L+H L ++ VD
Sbjct: 141 AGASEAFATIDR---GADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L + + + KFD K+++L + TV VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + K R +SG+AP+ + AK HA L + YG TE S
Sbjct: 252 FYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVL-ERYGXTETNXNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I ++G + KGY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T++ +G+ TGD+G ID+ + I+ R K+L+ GF V P E+E+ + A P +
Sbjct: 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAP 524
++AV+ + GE A VVR G+ I E ++ + Q+ +K +V F D +P+
Sbjct: 426 ESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNT 485
Query: 525 SGKILRKDLR 534
GK+ + LR
Sbjct: 486 XGKVQKNVLR 495
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 142/524 (27%), Positives = 225/524 (42%), Gaps = 40/524 (7%)
Query: 25 LPLHTYCF-----ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
+ LH + N + F DR + G T+ D + ++A+GL + GV GD
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMV--DGVRLTHRDYLARAERLASGLLRDGVHTGDR 58
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVR 139
+ +L QNC + + + IGA N E Y D V
Sbjct: 59 VAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118
Query: 140 DLSEHHGA--RIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLP 197
+ G + I + F+ A + A + D + +++ G P
Sbjct: 119 GVLPSLGGVKKAYAIG---DGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRP 175
Query: 198 KGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257
+G +++ L+ + + VD L + DV L +LPLFH+ L ++L + G A +
Sbjct: 176 RGALISQGNLLIAQSSLVDAWR----LTEADVNLGMLPLFHVTGLG-LMLTLQQAGGASV 230
Query: 258 IMQKFDIVKLMELVQKYKVTV----APFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPM 313
I KFD + ++ +KVTV AP + I+ A + ++S+R V P
Sbjct: 231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA------QLASLRAVTGLDTP- 283
Query: 314 GKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIV 373
E + A P+A +G +E S FA P+ + + G + + +V
Sbjct: 284 --ETIERFEATCPNATFWATFGQSET----SGLSTFA--PYRDRPKSAGRPLFWRTVAVV 335
Query: 374 DPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFI 433
D + LP + GEI +RG + KGY N+ AT+ + GW HTGD+G D D LF
Sbjct: 336 DAED-RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFY 393
Query: 434 VDRL--KELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSK 491
R KELIK G V PAE+E L HP I+DA V+ + D E A V G
Sbjct: 394 AGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES 453
Query: 492 ITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRT 535
I D + ++++ + YK+ V F +++PK G I R ++T
Sbjct: 454 IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKT 497
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 140/521 (26%), Positives = 233/521 (44%), Gaps = 30/521 (5%)
Query: 33 ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF 92
+ +++ DR I G T ++Y +++ + ++AAG KLG+Q+ D +++ L N +F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFE 90
Query: 93 AFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYND-KVRDLSEHHGARIVT 151
+GA A P + E Y+ R L+ +++ T
Sbjct: 91 VIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT 150
Query: 152 IDP-----PPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG 206
+ E L +L T+ ++P VK + DV L S G+TGL K + TH
Sbjct: 151 LKNIIVAGEAEEFLPLEDLHTEP--VKLPEVKSS--DVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 207 LVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIV 265
+ S+ + V+ +L V L LP+ H Y L+S +L L G +++
Sbjct: 207 YIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262
Query: 266 KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325
L+++ KVT+ VPP+ + + + D+SS++ + G A E V+A
Sbjct: 263 DAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF 322
Query: 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQ 385
L Q +GM E G V L +P EI G + + V D + +
Sbjct: 323 -GCTLQQVFGMAE-GLVNYTRL---DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE 377
Query: 386 AGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKG 445
G + RG ++GY E + ++G+ TGDI + D + + R K+ I G
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGG 437
Query: 446 FQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV-RSNGSKITEDEIKQYISKQ 504
+VA E+E L+AHP + DAA+V M D+ GE F++ R K E+K ++ ++
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAA--ELKAFLRER 495
Query: 505 -VVFYKRINRVFFTDSIPKAPSGKILRKDLR----TKLAAG 540
+ YK +RV F +S P+ GK+ +K LR KL AG
Sbjct: 496 GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 207/490 (42%), Gaps = 15/490 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG G ML+H L ++ VD
Sbjct: 141 AGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L +++ + FD +++L+ + V + VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + +R +SG+AP+ + A HA L + YGMTE S
Sbjct: 252 FYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I + G + GY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T + +G+ TGD+G ID+ + I+ R +L+ GF V P E+E+ + A P +
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAP 524
++AV+ + GE A VVR G+ I E ++ + Q+ + V F D +P+
Sbjct: 426 ESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNT 485
Query: 525 SGKILRKDLR 534
G + LR
Sbjct: 486 MGAVQXNVLR 495
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 176/362 (48%), Gaps = 23/362 (6%)
Query: 172 NEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVIL 231
+ I N DD+ ++ ++SGTTG K V T + S G +L ++ L
Sbjct: 153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI----GCKESLGFDRDTNWL 208
Query: 232 CVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
VLP++HI L SVLL A+ G + I+ KF+ +++ +++ ++T VP + + +
Sbjct: 209 SVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ 267
Query: 292 SGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAK 351
G + Y++ I ++ GA +E A++ LP + +GMTE S L
Sbjct: 268 QGLHEPYNLQKI--LLGGAKLSATMIETALQYNLP---IYNSFGMTET---CSQFLTATP 319
Query: 352 EPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411
E + G N ++KI +P+ + GE+ I+GA +M GYL + T T
Sbjct: 320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTF- 372
Query: 412 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPM 471
+ G+ +TGDI ID + + I DR K+LI G + P ++E + P ISDA V
Sbjct: 373 -ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGH 431
Query: 472 KDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRK 531
D+ G+VP + V S I++ ++ Y+SK + YK D++P +GK+ R
Sbjct: 432 PDDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRN 489
Query: 532 DL 533
L
Sbjct: 490 KL 491
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 138/521 (26%), Positives = 227/521 (43%), Gaps = 30/521 (5%)
Query: 33 ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF 92
+ +++ DR I G T ++Y +++ + ++AAG KLG+Q+ D +++ L N +F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFE 90
Query: 93 AFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYND-KVRDLSEHHGARIVT 151
+GA A P + E Y+ R L+ +++ T
Sbjct: 91 VIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT 150
Query: 152 IDP-----PPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG 206
+ E L +L T+ ++P VK + DV L S G+TGL K + TH
Sbjct: 151 LKNIIVAGEAEEFLPLEDLHTEP--VKLPEVKSS--DVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 207 LVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIV 265
+ S+ + V+ +L V L LP H Y L+S +L L G +++
Sbjct: 207 YIYSLKRSVE----VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262
Query: 266 KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325
L+++ KVT+ VPP+ + + D+SS++ + G A E V+A
Sbjct: 263 DAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF 322
Query: 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQ 385
L Q +G E G V L +P EI G + V D + +
Sbjct: 323 -GCTLQQVFGXAE-GLVNYTRL---DDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGE 377
Query: 386 AGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKG 445
G + RG ++GY E + ++G+ TGDI + D + + R K+ I G
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGG 437
Query: 446 FQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV-RSNGSKITEDEIKQYISKQ 504
+VA E+E L+AHP + DAA V D+ GE F++ R K E+K ++ ++
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAA--ELKAFLRER 495
Query: 505 -VVFYKRINRVFFTDSIPKAPSGKILRKDLR----TKLAAG 540
+ YK +RV F +S P+ GK+ +K LR KL AG
Sbjct: 496 GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 31/396 (7%)
Query: 48 PTGDV-YTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTT 106
P+ DV TYA + + + A L+ LG+ KGD + LL+ N +F F GA+ +GA +
Sbjct: 24 PSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 83
Query: 107 ANPFYTPPEXXXXXXXXXXXXXXXXXVYN-------DKVRDLSEHHGARIVTIDPPPENC 159
N PE +Y D +R ++ G I
Sbjct: 84 INTRLAAPEVSFILSDSGSKVV----IYGAPSAPVIDAIRAQADPPGTVTDWI-----GA 134
Query: 160 LHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 219
+E + A +E PAV+ DD + + Y+SGTTG PKGV+ TH+ SV
Sbjct: 135 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHE----SVHSAASSWA 189
Query: 220 PNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVA 279
+ + D +L LP+FH+ +L +V+ A+R G ++ M +FD K+ L+ + +V +
Sbjct: 190 STIDVRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIG 248
Query: 280 PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339
VP I+ + + + + D R ++G APM + L AK + ++ QGY +TE+
Sbjct: 249 GAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTES 306
Query: 340 GPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
++ L+ E K+G+ G ++ V D G+ + + GE+ I+ ++K
Sbjct: 307 CGGGTLLLS---EDALRKAGSAGRATMFTDVA-VRGDDGV-IREHGEGEVVIKSDILLKE 361
Query: 400 YLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVD 435
Y N EAT D GW TGDIG IDD+ L+I D
Sbjct: 362 YWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 125/493 (25%), Positives = 208/493 (42%), Gaps = 18/493 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG G ML+H L ++ VD
Sbjct: 141 AGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L +++ + FD +++L+ + V + VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + +R +SG+AP+ + A HA L + YGMTE S
Sbjct: 252 FYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I + G + GY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T + +G+ TGD+G ID+ + I+ R +L+ GF V P E+E+ + A P +
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNG---SKITEDEIKQYISKQVVFYKRINRVFFTDSIP 521
++AV+ + GE AFVV S+I +E+ ++ ++ + V F D +P
Sbjct: 426 ESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLP 485
Query: 522 KAPSGKILRKDLR 534
+ G + LR
Sbjct: 486 RNTMGAVQXNVLR 498
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 124/490 (25%), Positives = 205/490 (41%), Gaps = 15/490 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG G ML+H L ++ VD
Sbjct: 141 AGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L +++ + FD +++L+ + V + VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + +R +SG+AP+ + A HA L + YGMTE S
Sbjct: 252 FYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I + G + GY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T + +G+ TGD+G ID+ + I+ R +L+ GF V P E+E+ + A P +
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAP 524
++AV+ + GE AFVV +E ++ + Q+ + V F D +P+
Sbjct: 426 ESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNT 485
Query: 525 SGKILRKDLR 534
G + LR
Sbjct: 486 MGAVQXNVLR 495
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 131/494 (26%), Positives = 218/494 (44%), Gaps = 25/494 (5%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TY ++E +R+ A+ L LGV + I+L++ + AFLGA Y G AN TP
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVR---DLSEHHGARIVTIDP---PPENCLHFSELIT 167
+ V + +EH G +++ P P F ELI
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELID 169
Query: 168 QADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKE 227
A A DD+ YSSG+TG PKG + TH L + P L + +
Sbjct: 170 AAAPAAK-AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAEN 225
Query: 228 DVILCVLPLFHIYSLNSVLLCALRVGA-AILIMQKFDIVKLMELVQKYKVTVAPFVPPIV 286
DV+ LF Y L + L L VGA AIL+ ++ + + +++ TV VP +
Sbjct: 226 DVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
Query: 287 LAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMC 346
+ S ++ +IR S + +E+ + A ++ G G TE +
Sbjct: 286 ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEM-----LH 339
Query: 347 LAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREA 406
+ + ++ G G V E+++ D + G ++P + G++ I+G Y N+RE
Sbjct: 340 IFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREK 398
Query: 407 TETTIDKEGWLHTGDIGYIDDDDELFI-VDRLKELIKFKGFQVAPAELEAMLIAHPNISD 465
+ T E W+ +GD Y + ++ R +++K G V+P E+E +L+ H + +
Sbjct: 399 SRATFLGE-WIRSGD-KYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLE 456
Query: 466 AAVVPMKDEAAGEVPVAFVVRSNG---SKITEDEIKQYISKQVVFYKRINRVFFTDSIPK 522
AAVV + D AFVV S+I +E+K ++ ++ +K + F D +PK
Sbjct: 457 AAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPK 515
Query: 523 APSGKILRKDLRTK 536
+GKI R LR +
Sbjct: 516 TATGKIQRFKLREQ 529
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 124/518 (23%), Positives = 216/518 (41%), Gaps = 60/518 (11%)
Query: 52 VYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFY 111
++T+ D++ S K A K G+ KGD +ML L++ F + LG +GA + A
Sbjct: 86 IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHML 145
Query: 112 TPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHH-------------GARIVTIDPPPEN 158
+ +D + E H G ++ E
Sbjct: 146 KTRDIVYRIEKAGLKMIVCIAE-DDVPEQVDEAHAECGDIPLKKAKVGGDVL------EG 198
Query: 159 CLHFSELITQAD---ENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG-------LV 208
+ F + + ++ E V +D+ + +SSGT G PK M+ H L
Sbjct: 199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILT 256
Query: 209 TSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ--KFDIVK 266
Q V+ + + + CV L G A+ + +F+
Sbjct: 257 AKYWQNVEDDGLHYTVADSGWGKCVW---------GKLYGQWIAGCAVFVYDYDRFEAKN 307
Query: 267 LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLP 326
++E KY VT PP + D+ Y+ S+++ + P+ E+ + +
Sbjct: 308 MLEKASKYGVTTF-CAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRF-LEFT 365
Query: 327 HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQA 386
KL +G+G TE V+++ EP K G+ G +++++D D G +
Sbjct: 366 GIKLMEGFGQTET--VVTIATFPWMEP---KPGSIGKPTPGYKIELMDRD-GRLCEVGEE 419
Query: 387 GEICIRGAQ-----IMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELI 441
GEI I + + Y D E TE T +G+ HTGD+ ++D+D L+ V R ++I
Sbjct: 420 GEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDII 478
Query: 442 KFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNG---SKITEDEIK 498
K G++V P E+E+ LI HP + + A+ + D G+V A +V + S ++E++
Sbjct: 479 KTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQ 538
Query: 499 QYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTK 536
++ YK + F +PK SGKI R ++R K
Sbjct: 539 DHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 123/508 (24%), Positives = 221/508 (43%), Gaps = 33/508 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ GYG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYI-SKQVVFYKRI 511
+E +L P +++ V+ + D+ G+ A VV G ++ D + + S ++ +KR
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 512 NRVFFTDSIPKAPSGKILRKDLRTKLAA 539
R F D +PK K+LR+ L ++++
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 186/387 (48%), Gaps = 19/387 (4%)
Query: 154 PPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 213
PP L ++ +A +P + D + Y+SGTTG PKG ++ + L T++
Sbjct: 128 PPALGALERVDVDVRA-RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDA 186
Query: 214 QVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQK 273
D EDV++ LPLFH++ L +L LR G ++ + +F +
Sbjct: 187 LADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND 242
Query: 274 YKVTVAPFVPPIVLAVAKSGDVD---KYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKL 330
T+ VP + +A++ D ++ R ++SG+A + + + A ++
Sbjct: 243 -GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RV 300
Query: 331 GQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTG--ISLPRNQAGE 388
+ YGMTE +++ + EP ++G G + E+++V+ D +L GE
Sbjct: 301 IERYGMTET--LMNTSVRADGEP---RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGE 355
Query: 389 ICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDR-LKELIKFKGFQ 447
I +RG + YLN +AT ++G+ TGD+ D D + IV R +LIK G++
Sbjct: 356 IQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK 415
Query: 448 VAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE-DEIKQYISKQVV 506
+ E+E L+ HP + +AAV D GE VA++V ++ + + +++ ++
Sbjct: 416 IGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLA 475
Query: 507 FYKRINRVFFTDSIPKAPSGKILRKDL 533
+KR V + D++P+ GKI+++ L
Sbjct: 476 PHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/512 (24%), Positives = 218/512 (42%), Gaps = 52/512 (10%)
Query: 72 LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEX--------XXXXXXX 123
+GV+KGD + + + P+ + L S IGA + ++
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193
Query: 124 XXXXXXXXXVYNDKVRD--LSEHHGARIVTI---DPPPENCLHFSELITQADENE----- 173
+ ++ D L E G R V + P H + A E +
Sbjct: 194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTY 253
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P ++ +D + L Y+SG+TG PKGV + G + + H+EDV
Sbjct: 254 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM---RYTFDTHQEDVFFTA 310
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ I V+ L G A L+ + + + +++ ++KVT P + +
Sbjct: 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL 370
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG--QGYGMTEAGPVLSM 345
++GD ++ + + S+R + S P+ E+ + K+ ++ Y TE+G L
Sbjct: 371 KRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430
Query: 346 CLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQA-GEICIRGAQ------IMK 398
LA P +K G+ + ++DP+TG L + A G + ++ A I K
Sbjct: 431 PLAGGVTP--MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 488
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
+ DR G+ TGD D D ++I+ R+ +++ G +++ AE+EA +I
Sbjct: 489 NH--DRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII 546
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVV---RSNGSKITEDEIKQYISKQVVFYKRIN--- 512
P +++ AVV D+ G+ AFVV +S+ S T+DE+ Q I K +VF R +
Sbjct: 547 EDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL-QDIKKHLVFTVRKDIGP 605
Query: 513 -----RVFFTDSIPKAPSGKILRKDLRTKLAA 539
+ D +PK SGKI+R+ LR LA
Sbjct: 606 FAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 61/566 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQVVFYKRINRVFFTD 518
I++AAVV + G+ A+V ++G + + + E++ ++ K++ + + +TD
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTD 600
Query: 519 SIPKAPSGKILRKDLRTKLAAGDLRN 544
S+PK SGKI+R+ LR K+AAGD N
Sbjct: 601 SLPKTRSGKIMRRILR-KIAAGDTSN 625
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 122/508 (24%), Positives = 220/508 (43%), Gaps = 33/508 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYI-SKQVVFYKRI 511
+E +L P +++ V+ + D+ G+ A VV G ++ D + + S ++ +KR
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 512 NRVFFTDSIPKAPSGKILRKDLRTKLAA 539
R F D +PK K+LR+ L ++++
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 136/566 (24%), Positives = 240/566 (42%), Gaps = 61/566 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQVVFYKRINRVFFTD 518
I++AAVV + G+ A+V ++G + + + E++ +++K++ + + +TD
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTD 600
Query: 519 SIPKAPSGKILRKDLRTKLAAGDLRN 544
S+PK SGKI+R+ LR K+AAGD N
Sbjct: 601 SLPKTRSGKIMRRILR-KIAAGDTSN 625
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 123/508 (24%), Positives = 220/508 (43%), Gaps = 33/508 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN EAT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYI-SKQVVFYKRI 511
+E +L P +++ V+ + D+ G+ A VV G ++ D + + S ++ +KR
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 512 NRVFFTDSIPKAPSGKILRKDLRTKLAA 539
R F D +PK K+LR+ L ++++
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 61/566 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGA 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQVVFYKRINRVFFTD 518
I++AAVV + G+ A+V ++G + + + E++ ++ K++ + + +TD
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTD 600
Query: 519 SIPKAPSGKILRKDLRTKLAAGDLRN 544
S+PK SGKI+R+ LR K+AAGD N
Sbjct: 601 SLPKTRSGKIMRRILR-KIAAGDTSN 625
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 61/566 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQVVFYKRINRVFFTD 518
I++AAVV + G+ A+V ++G + + + E++ ++ K++ + + +TD
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTD 600
Query: 519 SIPKAPSGKILRKDLRTKLAAGDLRN 544
S+PK SGKI+R+ LR K+AAGD N
Sbjct: 601 SLPKTRSGKIMRRILR-KIAAGDTSN 625
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 61/566 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQVVFYKRINRVFFTD 518
I++AAVV + G+ A+V ++G + + + E++ ++ K++ + + +TD
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTD 600
Query: 519 SIPKAPSGKILRKDLRTKLAAGDLRN 544
S+PK SGKI+R+ LR K+AAGD N
Sbjct: 601 SLPKTRSGKIMRRILR-KIAAGDTSN 625
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 129/532 (24%), Positives = 227/532 (42%), Gaps = 56/532 (10%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
+Y ++ + A L LG++KGDV+ + + P+ A L + IGA + ++P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 114 P------------------EXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---I 152
E + N V + EH T I
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDI 227
Query: 153 DPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 212
D L + +LI +A P +N +D + + Y+SG+TG PKGV+ T G + A
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 213 QQVDGENPNLYL---HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKF----DIV 265
Y+ H D+ C + + + +L L GA L+ +
Sbjct: 287 TTFK------YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA 340
Query: 266 KLMELVQKYKVTVAPFVPPIVLAVAKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRA 323
++ ++V K++V + P + A+ GD ++ D SS+R + S P+ E +
Sbjct: 341 RMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWK 400
Query: 324 KLPHAK--LGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISL 381
K+ K + + TE G + L A E+K+G+ + +VD +
Sbjct: 401 KIGKEKCPVVDTWWQTETGGFMITPLPGA---IELKAGSATRPFFGVQPALVDNE---GH 454
Query: 382 PRNQAGE----ICIRGAQIMKGYLNDREATETTIDK--EGWLHTGDIGYIDDDDELFIVD 435
P+ A E I + D E E T + +GD D+D +I
Sbjct: 455 PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITG 514
Query: 436 RLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED 495
R+ +++ G ++ AE+E+ L+AHP I++AAVV + G+ A+V ++G + + +
Sbjct: 515 RVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE 574
Query: 496 ---EIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGDLRN 544
E++ ++ K++ + + +TDS+PK SGKI+R+ LR K+AAGD N
Sbjct: 575 LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR-KIAAGDTSN 625
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/508 (24%), Positives = 220/508 (43%), Gaps = 33/508 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYI-SKQVVFYKRI 511
+E +L P +++ V+ + D+ G+ A VV G ++ D + + S ++ +KR
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 512 NRVFFTDSIPKAPSGKILRKDLRTKLAA 539
R F D +PK K+LR+ L ++++
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 125/499 (25%), Positives = 212/499 (42%), Gaps = 32/499 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF---VFAFLGASYIGATSTTANPF 110
+Y +++ S +A L++ G+ KGD ++ L N +F FA L A + + ++
Sbjct: 57 SYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQ 116
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQ-- 168
Y V+++ S H ++ PE L + T
Sbjct: 117 YELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLH------DVNLSPEIILMLNHQATDFG 170
Query: 169 -ADENEIPA------VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV--AQQVDGEN 219
D E PA D+V S G+TG PK + TH SV + ++ G N
Sbjct: 171 LLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN 230
Query: 220 PNLYLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
N L LC LP H + L+S L L G +++ + + ++Q+++V +
Sbjct: 231 SNTRL------LCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNM 284
Query: 279 APFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338
A VP V+ + K + S++ + G A + L V L + KL Q +GM E
Sbjct: 285 ASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAE 343
Query: 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMK 398
G V L + E G + + E+KIVD + +P + G + RG
Sbjct: 344 -GLVNYTRLDDSDEQIFTTQGR--PISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFC 399
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY E D++ + ++GD+ D L +V R+K+ I G ++A E+E +++
Sbjct: 400 GYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL 459
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTD 518
HP + AA+V + DE GE AF+V N + + + YK +++ +
Sbjct: 460 LHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIE 519
Query: 519 SIPKAPSGKILRKDLRTKL 537
S+P GK+ +K LR+ L
Sbjct: 520 SLPLTAVGKVDKKQLRSIL 538
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/508 (24%), Positives = 220/508 (43%), Gaps = 33/508 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYI-SKQVVFYKRI 511
+E +L P +++ V+ + D+ G+ A VV G ++ D + + S ++ +KR
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 512 NRVFFTDSIPKAPSGKILRKDLRTKLAA 539
R F D +PK K+LR+ L ++++
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 135/566 (23%), Positives = 238/566 (42%), Gaps = 61/566 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQVVFYKRINRVFFTD 518
I++AAVV + G+ A+V ++G + + + E++ ++ K++ + + +TD
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTD 600
Query: 519 SIPKAPSGKILRKDLRTKLAAGDLRN 544
S+PK SG I+R+ LR K+AAGD N
Sbjct: 601 SLPKTRSGAIMRRILR-KIAAGDTSN 625
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 135/563 (23%), Positives = 236/563 (41%), Gaps = 54/563 (9%)
Query: 1 MEAKQDHQE----FIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCI--INGPTGDV-Y 53
M + HQE F F S + D H E + P + +NG ++ +
Sbjct: 24 MSLQWGHQEVPAKFNFASDVLD---------HWADMEKAGKRPPSPALWWVNGKGKELMW 74
Query: 54 TYADVELTSRKVAAGLS-KLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYT 112
+ ++ S++ A LS G+Q+GD + ++L P++ LG G T
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPG----T 130
Query: 113 PPEXXXXXXXXXXXXXXXXXVYNDKVRD-----LSEHHGARI--VTIDPPPENCLHFSEL 165
V D+V SE RI + + + L+F +L
Sbjct: 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKL 190
Query: 166 ITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLH 225
+ +A V+ + A+ ++SGT+GLPK M H + ++D L
Sbjct: 191 LNEASTTH-HCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKMDAGWTGL--Q 245
Query: 226 KEDVILCVLPLFHIYSLNSVLLCALRVGAAILI--MQKFDIVKLMELVQKYKVTVAPFVP 283
D++ + I ++ L+ +GA + + KFD + +++ + Y + +
Sbjct: 246 ASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-SMMGA 304
Query: 284 PIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL 343
PIV + D+ Y ++ ++ + E + RA+ + + YG TE G
Sbjct: 305 PIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLT- 362
Query: 344 SMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGA-----QIMK 398
C+ + +IK G GT +++I+D D G LP G+I IR I
Sbjct: 363 --CMV--SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFS 417
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY+++ + T I + WL GD G D+D + R ++I G+++ P+E+E L+
Sbjct: 418 GYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVV-----RSNGSKITEDEIKQYISKQVVFYKRINR 513
HP + + AV+ D GEV AFVV S+ + E++Q++ YK +
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRK 536
Query: 514 VFFTDSIPKAPSGKILRKDLRTK 536
+ F ++PK +GKI R LR K
Sbjct: 537 IEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 135/563 (23%), Positives = 236/563 (41%), Gaps = 54/563 (9%)
Query: 1 MEAKQDHQE----FIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCI--INGPTGDV-Y 53
M + HQE F F S + D H E + P + +NG ++ +
Sbjct: 24 MSLQWGHQEVPAKFNFASDVLD---------HWADMEKAGKRPPSPALWWVNGKGKELMW 74
Query: 54 TYADVELTSRKVAAGLS-KLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYT 112
+ ++ S++ A LS G+Q+GD + ++L P++ LG G T
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPG----T 130
Query: 113 PPEXXXXXXXXXXXXXXXXXVYNDKVRD-----LSEHHGARI--VTIDPPPENCLHFSEL 165
V D+V SE RI + + + L+F +L
Sbjct: 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKL 190
Query: 166 ITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLH 225
+ +A V+ + A+ ++SGT+GLPK M H + ++D L
Sbjct: 191 LNEASTTH-HCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKMDAGWTGL--Q 245
Query: 226 KEDVILCVLPLFHIYSLNSVLLCALRVGAAILI--MQKFDIVKLMELVQKYKVTVAPFVP 283
D++ + I ++ L+ +GA + + KFD + +++ + Y + +
Sbjct: 246 ASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-SMMGA 304
Query: 284 PIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL 343
PIV + D+ Y ++ ++ + E + RA+ + + YG TE G
Sbjct: 305 PIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLT- 362
Query: 344 SMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGA-----QIMK 398
C+ + +IK G GT +++I+D D G LP G+I IR I
Sbjct: 363 --CMV--SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFS 417
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY+++ + T I + WL GD G D+D + R ++I G+++ P+E+E L+
Sbjct: 418 GYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVV-----RSNGSKITEDEIKQYISKQVVFYKRINR 513
HP + + AV+ D GEV AFVV S+ + E++Q++ YK +
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRK 536
Query: 514 VFFTDSIPKAPSGKILRKDLRTK 536
+ F ++PK +GKI R LR K
Sbjct: 537 IEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 120/502 (23%), Positives = 214/502 (42%), Gaps = 35/502 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTA------ 107
+Y ++ + +A L + G++ G+ ++ L N + F +G A
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 108 ---NPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTI--DPPPENCLHF 162
N + + E N V +EH R+V + D N
Sbjct: 112 SELNAYASQIEPALLIADRQHALFSGDDFLNTFV---TEHSSIRVVQLLNDSGEHN---L 165
Query: 163 SELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 222
+ I E+ A D+V S GTTG PK + TH SV + V+
Sbjct: 166 QDAINHPAED-FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----IC 220
Query: 223 YLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPF 281
++ LC +P H Y+++S L G +++ L++K++V V
Sbjct: 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTAL 280
Query: 282 VPPIV---LAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338
VPP V L G+ + ++S++ + G A + L + A++ +L Q +GM E
Sbjct: 281 VPPAVSLWLQALIEGE-SRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAE 338
Query: 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMK 398
G V L + E G + + E+ + D + G LP+ + G + RG +
Sbjct: 339 -GLVNYTRLDDSAEKIIHTQGY--PMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFR 394
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY + + D G+ +GD+ ID + + + R K+ I G ++A E+E +L+
Sbjct: 395 GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL 454
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQ-VVFYKRINRVFFT 517
HP + AA+V M+DE GE A++V + ++++++ +Q + +K +RV
Sbjct: 455 RHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV--QVRRFLREQGIAEFKLPDRVECV 512
Query: 518 DSIPKAPSGKILRKDLRTKLAA 539
DS+P GK+ +K LR LA+
Sbjct: 513 DSLPLTAVGKVDKKQLRQWLAS 534
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/502 (24%), Positives = 214/502 (42%), Gaps = 33/502 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L + PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA L + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEAXNSL-----YXRQP---KTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ + I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYI-SKQVVFYKRI 511
+E +L P +++ V+ + D+ G+ A VV G ++ D + + S ++ +KR
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 512 NRVFFTDSIPKAPSGKILRKDL 533
R F D +PK K+LR+ L
Sbjct: 477 KRYFILDQLPKNALNKVLRRQL 498
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 131/548 (23%), Positives = 225/548 (41%), Gaps = 62/548 (11%)
Query: 8 QEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAA 67
+EF+ P PL + E ++ D P + +G +Y +++ + ++A
Sbjct: 447 REFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTY--SGQTLSYRELDEEANRIAR 504
Query: 68 GLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXX 127
L K G KG V+ L + + V LG GA +P PE
Sbjct: 505 RLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP--KLPEDRISYM------ 556
Query: 128 XXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEI-PAVKINPDDVVA 186
+ + L H + + P F + T+ +E PA I+P+D
Sbjct: 557 -----LADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAY 611
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNSV 245
+ Y+SGTTG PKG + TH + + + VD + +D L V F ++ +
Sbjct: 612 IMYTSGTTGKPKGNITTHAN-IQGLVKHVD----YMAFSDQDTFLSVSNYAFDAFTFD-- 664
Query: 246 LLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMS 301
A + AA LI+ D +L +L+ + V V F + + D M
Sbjct: 665 -FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVM-FATTALFNLLTDAGEDW--MK 720
Query: 302 SIRTVMSGAAPMGKELEDAVRAKLPHAK-----LGQG-----YGMTEAGPVLSMCLAFAK 351
+R ++ G RA +PH + +G G YG TE G V +
Sbjct: 721 GLRCILFGGE----------RASVPHVRKALRIMGPGKLINCYGPTE-GTVFATAHVVHD 769
Query: 352 EPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREAT-ETT 410
P I S G + NA + I++ + + P GE+CI G + KGY+N + T E
Sbjct: 770 LPDSISSLPIGKPISNASVYILNEQSQLQ-PFGAVGELCISGMGVSKGYVNRADLTKEKF 828
Query: 411 IDK-----EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISD 465
I+ E TGD+ D + R+ + +K +G ++ E+E L +P + D
Sbjct: 829 IENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKD 888
Query: 466 AAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPS 525
A VV + E+ A++V N ++++ +++K ++ KQ+ Y F D +P +
Sbjct: 889 AVVVADRHESGDASINAYLV--NRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTN 946
Query: 526 GKILRKDL 533
GK+ ++ L
Sbjct: 947 GKVNKRLL 954
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/484 (24%), Positives = 196/484 (40%), Gaps = 100/484 (20%)
Query: 44 IINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103
+N + TY ++ ++ +AA L G + GD ++LL + AFLG Y G
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
Query: 104 STTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPP------PE 157
A P Y P + +K+ D ++ RIVT P +
Sbjct: 92 ---AVPIYPPAQ--------------------EKLLDKAQ----RIVTNSKPVIVLXIAD 124
Query: 158 NCLHFS--ELITQADENEIPAV----------------KINPDDVVALPYSSGTTGLPKG 199
+ F+ EL T +IPA+ I +D+ L Y+SG+T PKG
Sbjct: 125 HIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKG 184
Query: 200 VMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259
V ++H L+ ++ + + N E +I LP H L +L + G +
Sbjct: 185 VXVSHHNLLDNLNKIFTSFHXN----DETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXX 240
Query: 260 QKFDIVK----LMELVQKYKVTVA---PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAP 312
F ++ ++ + KYK T++ F + + + D+SS T +GA P
Sbjct: 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300
Query: 313 MGKELEDAVRAKLPHAKLGQG-----YGMTEAGPVLS--------MCLAFAKEPFE---- 355
+ +E + + YG+ EA +++ L AKE F+
Sbjct: 301 VREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRV 360
Query: 356 ----------IKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDRE 405
K + G ++ E+KI+DPDT I +Q GEI ++ + KGY N E
Sbjct: 361 HFADDNSPGSYKLVSSGNPIQ--EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPE 418
Query: 406 ATETTI-----DKEG---WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAML 457
T D E +L TGD+G++ ++EL++ R+K+LI G P ++E L
Sbjct: 419 ETRHAFAGKIKDDERSAIYLRTGDLGFL-HENELYVTGRIKDLIIIYGKNHYPQDIEFSL 477
Query: 458 IAHP 461
P
Sbjct: 478 XHSP 481
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 198/485 (40%), Gaps = 96/485 (19%)
Query: 38 FADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGA 97
F DR C + D Y ++ + A L L ++KGD + L+ + +FV AF
Sbjct: 38 FYDRRCQLE----DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFAC 93
Query: 98 SYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDL-SEHHGARIVTID--- 153
Y G A P P ++ K++ L + A I+T D
Sbjct: 94 QYAG---LVAVPLAIP------------XGVGQRDSWSAKLQGLLASCQPAAIITGDEWL 138
Query: 154 PPPENCLHFS---ELITQADENEIPAVKIN-----PDDVVALPYSSGTTGLPKGVMLTHK 205
P H + +++ A +P + P+D+ L Y+SG+T P+GV++TH+
Sbjct: 139 PLVNAATHDNPELHVLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHR 198
Query: 206 GLVTSV-AQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLC--ALRVGAAILIMQKF 262
+ ++ A DG + L D + LP +H L LL A ++ L Q F
Sbjct: 199 EVXANLRAISHDG----IKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDF 254
Query: 263 DI--VKLMELVQKYKVTVA---PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKE- 316
++ ++L+ K + TV+ PF + D+ + D+S R GA P+ E
Sbjct: 255 AXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQ 314
Query: 317 ----LEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKI 372
E + + YG+ E ++ ++F+ E A G VV + I
Sbjct: 315 LHQFAECFRQVNFDNKTFXPCYGLAEN----ALAVSFSDE-------ASGVVVNEVDRDI 363
Query: 373 VD-------------------------PDTGISLPRNQA---------GEICIRGAQIMK 398
++ P+ GI + RN+A G ICI G +
Sbjct: 364 LEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEI-RNEAGXPVAERVVGHICISGPSLXS 422
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY D + ++ I GWL TGD+GY+ D L++ R+K+LI +G + P ++E +
Sbjct: 423 GYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAE 480
Query: 459 AHPNI 463
P I
Sbjct: 481 QEPEI 485
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 183/425 (43%), Gaps = 29/425 (6%)
Query: 136 DKVRDLSEHHGARI------VTIDPPPENCLHFSEL----ITQADENEIPAVKINPDDVV 185
D+V+ ++E+ GA++ VT+ P + L T P + D+
Sbjct: 88 DRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENF 147
Query: 186 ALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245
+ Y+SG+TG PKGV +T+ LV+ V+ N L V L P S+ +
Sbjct: 148 YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQAPFSFDLSVMDI 203
Query: 246 LLCALRVGAAILIMQKFDIVK---LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSS 302
+L G + + K I + L +++ + V P + + +
Sbjct: 204 -YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPN 262
Query: 303 IRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACG 362
++T + + E+ + + P A + YG TEA ++ + + KS G
Sbjct: 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG 322
Query: 363 TVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATE---TTIDKEGWLHT 419
+ + I+ D I+ P + GEI I G + GYL E TE T ID E T
Sbjct: 323 YCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKT 381
Query: 420 GDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEV 479
GD GY+ ++ LF RL IK G+++ E+E L A + A +VP+K +
Sbjct: 382 GDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDY 440
Query: 480 PVAFVVRSNGS-----KITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLR 534
+A VV S K+T IK+ +++++ Y + + SIP P+GK+ RK L
Sbjct: 441 LLAVVVPGEHSFEKEFKLT-SAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLL 499
Query: 535 TKLAA 539
+++ A
Sbjct: 500 SEVTA 504
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 183/425 (43%), Gaps = 29/425 (6%)
Query: 136 DKVRDLSEHHGARI------VTIDPPPENCLHFSEL----ITQADENEIPAVKINPDDVV 185
D+V+ ++E+ GA++ VT+ P + L T P + D+
Sbjct: 88 DRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENF 147
Query: 186 ALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245
+ Y+SG+TG PKGV +T+ LV+ V+ N L V L P S+ +
Sbjct: 148 YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQAPFSFDLSVMDI 203
Query: 246 LLCALRVGAAILIMQKFDIVK---LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSS 302
+L G + + K I + L +++ + V P + + +
Sbjct: 204 -YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPN 262
Query: 303 IRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACG 362
++T + + E+ + + P A + YG TEA ++ + + KS G
Sbjct: 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG 322
Query: 363 TVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATE---TTIDKEGWLHT 419
+ + I+ D I+ P + GEI I G + GYL E TE T ID E T
Sbjct: 323 YCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKT 381
Query: 420 GDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEV 479
GD GY+ ++ LF RL IK G+++ E+E L A + A +VP+K +
Sbjct: 382 GDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDY 440
Query: 480 PVAFVVRSNGS-----KITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLR 534
+A VV S K+T IK+ +++++ Y + + SIP P+GK+ RK L
Sbjct: 441 LLAVVVPGEHSFEKEFKLT-SAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLL 499
Query: 535 TKLAA 539
+++ A
Sbjct: 500 SEVTA 504
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 121/508 (23%), Positives = 200/508 (39%), Gaps = 66/508 (12%)
Query: 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF 110
D TY + + ++A L LGV G ++ + L+ V A L G T +P
Sbjct: 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQ 158
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQAD 170
+ P E E GA ++ P L + + D
Sbjct: 159 F-PVERLALSL---------------------EDTGAPLLVTSRPLSGRLTGTTTLYVED 196
Query: 171 E--NEIPA----VKINPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLY 223
E ++ PA + P+DV + ++SG+TG PKGVM H+ L T + Q G P+
Sbjct: 197 EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD-- 254
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPF 281
E + C + + L L AL GA ++ Q D +++ ELV ++ VT+
Sbjct: 255 ---EVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQL 309
Query: 282 VPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGP 341
+ + D +R ++G P R P +LG GYG E+
Sbjct: 310 SASLFNFLV---DEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES-- 364
Query: 342 VLSMCLAFAKEPFEIKSGACGTVV------RNAEMKIVDPDTGISLPRNQA-GEICIRGA 394
+ F + GT + ++D D + N A GE+ + GA
Sbjct: 365 -----MGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDD--LKPAANGALGELYVAGA 417
Query: 395 QIMKGYLNDREATETTI--------DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGF 446
+ GY++ T E TGD+ D L V R + +K +GF
Sbjct: 418 GLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGF 477
Query: 447 QVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE-DEIKQYISKQV 505
+V P E+EA L+ HP + AAV+ + VA+VV + E+++++++ +
Sbjct: 478 RVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEAL 537
Query: 506 VFYKRINRVFFTDSIPKAPSGKILRKDL 533
Y D +P+ P+GK+ R+ L
Sbjct: 538 PAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 168/369 (45%), Gaps = 46/369 (12%)
Query: 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSL 242
D+ + Y+SGTTG PKG ML HKG+ +V EN +L + ++D I + S+
Sbjct: 183 DLAYVIYTSGTTGNPKGTMLEHKGISNL---KVFFEN-SLNVTEKDRIGQFASISFDASV 238
Query: 243 NSVLLCALRVGAAILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD 299
+ + AL GA++ I+ K D VK + + + ++TV P V+ +D
Sbjct: 239 WEMFM-ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV------HLDPER 291
Query: 300 MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSG 359
+ SI+T+++ + L + + K+ + YG TE + +A KE S
Sbjct: 292 ILSIQTLITAGSATSPSLVNKWKEKVTYIN---AYGPTETTICATTWVA-TKETIG-HSV 346
Query: 360 ACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATET---------- 409
G ++N ++ IVD + + +AGE+CI G + +GY E T
Sbjct: 347 PIGAPIQNTQIYIVDENLQLK-SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
Query: 410 -----TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
T D+ WL G+I Y+ R+ +K +G +V E+E++L+ H IS
Sbjct: 406 EKLYKTGDQARWLSDGNIEYL---------GRIDNQVKIRGHRVELEEVESILLKHMYIS 456
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAP 524
+ AV KD A+ V I ++++Q+ S+++ Y + D +P
Sbjct: 457 ETAVSVHKDHQEQPYLCAYFVSE--KHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTS 514
Query: 525 SGKILRKDL 533
+GKI RK L
Sbjct: 515 NGKIDRKQL 523
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 162/370 (43%), Gaps = 26/370 (7%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241
DD + ++SGTTG PKGV ++H L++ + E+ + K+ +L P YS
Sbjct: 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI--EDAAFDVPKQPQMLAQPP----YS 198
Query: 242 LN-SVLLCA--LRVGAAILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDV 295
+ SV+ A L +G + + K D +L + + V + P S D
Sbjct: 199 FDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF 258
Query: 296 DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFE 355
+ M ++ + + + P AK+ YG TEA LS + +E +
Sbjct: 259 CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALS-AIEITREMVD 317
Query: 356 IKSG-ACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATET---TI 411
+ G ++ I+D D G L + GEI + G + KGYLN+ E T T
Sbjct: 318 NYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTF 376
Query: 412 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPM 471
+ HTGDIG + +D+ L RL IK+ G+++ ++ L P ++ A VP
Sbjct: 377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPR 436
Query: 472 KD-EAAGEVPVAFVVRSNGSKITEDE-------IKQYISKQVVFYKRINRVFFTDSIPKA 523
+ E + +A++V +G K D IK + ++ Y ++ + DS+P
Sbjct: 437 YNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLT 496
Query: 524 PSGKILRKDL 533
P+GKI K L
Sbjct: 497 PNGKIDIKTL 506
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 118/507 (23%), Positives = 201/507 (39%), Gaps = 56/507 (11%)
Query: 50 GDVYTYADVELTSRKVAAGLSK-LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTAN 108
G TY ++ S + AA + K + +K I++ P + +FLG S A
Sbjct: 24 GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG-------SVKAG 76
Query: 109 PFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIV------TIDPPPENCLHF 162
Y P + + ++++ + E GA ++ +ID +
Sbjct: 77 HPYIPVDLS---------------IPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV 121
Query: 163 S--ELITQADENEIPAVK----INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 216
S EL+ ENE +V + + + Y+SG+TG PKGV ++ L S +
Sbjct: 122 SAEELL----ENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANL-QSFTDWIC 176
Query: 217 GENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVK---LMELVQK 273
+ P + + L P S+ + C L+ G + + K + K L E ++K
Sbjct: 177 ADFP---VSGGKIFLNQAPFSFDLSVMDLYPC-LQSGGTLHCVTKDAVNKPKVLFEELKK 232
Query: 274 YKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQG 333
+ V P V + + T M + + A+ + P AK+
Sbjct: 233 SGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT 292
Query: 334 YGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393
YG TEA ++ +S G + + I+D + G LP + GEI I G
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAG 351
Query: 394 AQIMKGYLNDREATETT-IDKEG-WLH-TGDIGYIDDDDELFIVDRLKELIKFKGFQVAP 450
+ +GYL + E TE EG W + TGD G+I D ++F RL IK G+++
Sbjct: 352 PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMEL 410
Query: 451 AELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVV---- 506
E+E + + A V+P + E +A +V E ++ I K++
Sbjct: 411 EEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLP 470
Query: 507 FYKRINRVFFTDSIPKAPSGKILRKDL 533
Y + + D I +GKI RK +
Sbjct: 471 AYMIPRKFIYQDHIQMTANGKIDRKRI 497
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 143/367 (38%), Gaps = 30/367 (8%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVT-SVAQQVDGENPNLYLHKEDVILCVLPLFHIY 240
D + + +SSGTTG PK + TH G+ + Q P + L PL
Sbjct: 164 DQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMR------FLVNSPLSFDA 217
Query: 241 SLNSVLLCALRVGAAILI-MQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD 299
+ + L G +L + D L +L+ + A + + D+D
Sbjct: 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV---DLDPDC 274
Query: 300 MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG--QGYGMTEAGPVLSMCLAFAKEPFEIK 357
+ +R +++G + + RA L H +L GYG TE + C + E
Sbjct: 275 LGGLRQLLTGGDIL--SVPHVRRALLRHPRLHLVNGYGPTE-NTTFTCCHVVTDDDLEED 331
Query: 358 SGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETT---IDKE 414
G + + ++D ++AGEI GA + +GY ND T + +
Sbjct: 332 DIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYR 391
Query: 415 GWL----HTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVP 470
G L TGD D+ L + R +K G+++ LE P I D A++
Sbjct: 392 GRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLV 451
Query: 471 MKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILR 530
+ ++ A+ +++ S Q + +Q+ ++R + +++P GK+ R
Sbjct: 452 RERNGVKQLLCAWTGKADAS-------PQALLRQLPTWQRPHACVRVEALPLTAHGKLDR 504
Query: 531 KDLRTKL 537
L +L
Sbjct: 505 AALLRRL 511
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 167/371 (45%), Gaps = 37/371 (9%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-LHKEDVILCVLPLFHIY 240
+D+ + Y+SGTTG PKGV + H ++ +A P+++ +D L LFH
Sbjct: 175 EDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA-----PSVFDFSGDDRWL----LFHSL 225
Query: 241 SLN-SV--LLCALRVGAAILIMQKFDIV---KLMELVQKYKVTVAPFVPPIVLAVAKSGD 294
S + SV + A GA ++++ + + + ++ VTV P LA+ ++
Sbjct: 226 SFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAV 285
Query: 295 VDKYDMSSIRTVMSGA----APMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFA 350
D+S +R V+ G APM + A L +L GYG+TE V +
Sbjct: 286 RGGRDVSGLRYVIFGGEKLTAPMLRPWAKAF--GLDRPRLVNGYGITET-TVFTTFEEIT 342
Query: 351 KEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREAT--- 407
+ + G + + ++V D G + + GE+ + GAQ+ +GYL E T
Sbjct: 343 EAYLAQDASIIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEK 401
Query: 408 --ETTIDKEG----WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E T +K G + TGD+ D R IK +G+++ +++E + H
Sbjct: 402 FPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHD 461
Query: 462 NISDAAVVPMKDEAAGEVPV--AFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDS 519
++ DA V +++ G++ + A+V R GS T E++ +I + Y R
Sbjct: 462 DVVDAVVT-VREFKPGDLRLVCAYVAR-EGSATTARELRNHIKTLLPAYMHPARYLPLPG 519
Query: 520 IPKAPSGKILR 530
+P+ +GK+ R
Sbjct: 520 LPRTVNGKVDR 530
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 65/304 (21%)
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKED-------VILCVLPLFHI 239
L Y+SG+T P GV+++H+ + + Q + G Y D ++ LP +H
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG-----YFADTDGIPPPNSALVSWLPFYHD 242
Query: 240 YSLNSVLLCALRVGA--AIL-----IMQKFDIVKLMELVQK--YKVTVAP-FVPPIVLAV 289
L + +CA +G A+L +Q+ + M L+ + + AP F +
Sbjct: 243 MGL-VIGICAPILGGYPAVLTSPVSFLQR--PARWMHLMASDFHAFSAAPNFAFELAARR 299
Query: 290 AKSGDVDKYDMSSIRTVMSG-----AAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
D+ D+ +I T++SG AA + + + R L + Y + EA +
Sbjct: 300 TTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEA--TVY 357
Query: 345 MCLAFAKEP-----FEIKSGACG----------------TVVRNAEMKIVDPDTGISLPR 383
+ + +P F+ +S + G + R+ ++IVD DT I P
Sbjct: 358 VATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPD 417
Query: 384 NQAGEICIRGAQIMKGYLNDREATETTIDK----------EG-WLHTGDIGYIDDDDELF 432
GEI + G + GY + +E T EG WL TGD G++ D ++F
Sbjct: 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKMF 476
Query: 433 IVDR 436
I+ R
Sbjct: 477 IIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 122/303 (40%), Gaps = 63/303 (20%)
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKED-------VILCVLPLFHI 239
L Y+SG+T P GV+ +H+ + + Q G Y D ++ LP +H
Sbjct: 188 LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSG-----YFADTDGIPPPNSALVSWLPFYHD 242
Query: 240 YSLNSVLLCALRVG-------AAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKS 292
L + +CA +G + + +Q+ + + + AP LA ++
Sbjct: 243 XGL-VIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFSAAPNFA-FELAARRT 300
Query: 293 GDVDK--YDMSSIRTVMSG-----AAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
D D D+ +I T++SG AA + + + R L + YG+ EA + +
Sbjct: 301 TDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEA--TVYV 358
Query: 346 CLAFAKEP-----FEIKSGACG----------------TVVRNAEMKIVDPDTGISLPRN 384
+ +P F+ +S + G + R+ ++IVD DT I P
Sbjct: 359 ATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDG 418
Query: 385 QAGEICIRGAQIMKGYLNDREATETTIDK----------EG-WLHTGDIGYIDDDDELFI 433
GEI + G + GY + +E T EG WL TGD G++ D + FI
Sbjct: 419 TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKXFI 477
Query: 434 VDR 436
+ R
Sbjct: 478 IGR 480
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 139/368 (37%), Gaps = 57/368 (15%)
Query: 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF 110
D TY + + ++A L LGV G ++ + L+ V A L G T +P
Sbjct: 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQ 158
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQAD 170
+ P E E GA ++ P L + + D
Sbjct: 159 F-PVERLALSL---------------------EDTGAPLLVTSRPLSGRLTGTTTLYVED 196
Query: 171 E--NEIPA----VKINPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLY 223
E ++ PA + P+DV + ++SG+TG PKGVM H+ L T + Q G P+
Sbjct: 197 EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD-- 254
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPF 281
E + C + + L L AL GA ++ Q D +++ ELV ++ VT+
Sbjct: 255 ---EVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQL 309
Query: 282 VPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGP 341
+ + D +R ++G P R P +LG GYG E+
Sbjct: 310 SASLFNFLV---DEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES-- 364
Query: 342 VLSMCLAFAKEPFEIKSGACGTV------VRNAEMKIVDPDTGISLPRNQA-GEICIRGA 394
+ F + GT + ++D D + N A GE+ + GA
Sbjct: 365 -----MGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDD--LKPAANGALGELYVAGA 417
Query: 395 QIMKGYLN 402
+ GY++
Sbjct: 418 GLAHGYVS 425
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 157/375 (41%), Gaps = 31/375 (8%)
Query: 152 IDPPPENCL------HFSELITQADENEIPAVKINPDDVVA-LPYSSGTTGLPKGVMLTH 204
++ PPE + F E ++ D ++I + P+++ A L Y+SG+TG PKGV ++
Sbjct: 140 VELPPETKVLDTKNQSFIENLSTQDTSDI--LNNYPENLDAYLLYTSGSTGTPKGVRVSR 197
Query: 205 KGLVT---SVAQQVDGENP-NLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ 260
L + + + + P +L L LC+ + L A R G + +
Sbjct: 198 HNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEXFL-AWRFGLCAVTGE 256
Query: 261 KFDIVK-LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELED 319
+ + L ++ VT A VP ++ ++G V + D + + G +
Sbjct: 257 RLSXLDDLPRTFRELGVTHAGIVPSLL---DQTGLVPE-DAPHLVYLGVGGEKXTPRTQQ 312
Query: 320 AVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGI 379
+ + L YG TE V C A P + + G + ++ ++ P +
Sbjct: 313 -IWSSSDRVALVNVYGPTE---VTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNE 367
Query: 380 SLPRNQAGEICIRGAQIMKGYLNDREATE-TTIDKEGWLHTGDIGYIDDDDELFIVDRLK 438
+ + AGE+ I G+ + GYLN +A I+ TGDI D D + + R
Sbjct: 368 HVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKD 427
Query: 439 ELIKFKGFQVAPAEL-EAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEI 497
E +K +G ++ E+ E + P D + + + + V S+G+ + E+
Sbjct: 428 EQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAV-RGEL 486
Query: 498 KQYISKQVVFYKRIN 512
+ +I++ YK IN
Sbjct: 487 R-WINEN---YKEIN 497
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 150/377 (39%), Gaps = 55/377 (14%)
Query: 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSL 242
D V + SSGTTG P ++ + L S A V + + K DV
Sbjct: 87 DGVRIHSSSGTTGNPTVIVHSQHDL-DSWANLVARCLYXVGIRKTDVFQNSSGYGXFTGG 145
Query: 243 NSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--M 300
A R+G + + + ++ + +K T +P + +A+ + D
Sbjct: 146 LGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRE 205
Query: 301 SSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA-GPVLSMCLAFAKEPFEIKSG 359
++++T++ GA P E + L + K +G TE GP ++ FE +
Sbjct: 206 TTLKTLVIGAEPHTDEQRRKIERXL-NVKAYNSFGXTEXNGPGVA---------FECQEQ 255
Query: 360 ACGTVVRNAEM-KIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEG--- 415
+ + +I+DP+TG +P + GE+ + TT+D+E
Sbjct: 256 NGXHFWEDCYLVEIIDPETGEPVPEGEIGELVL-----------------TTLDREXXPL 298
Query: 416 -WLHTGDI-----GYIDDDDELFIVDRLK----ELIKFKGFQVAPAELEAMLIAHPNISD 465
T D+ G +DR+K + KG + P ++E +L+ P +
Sbjct: 299 IRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDXFIIKGVNIFPXQVEKILVQFPELGS 358
Query: 466 AAVVPM-----KDEAAGEVPVAFVVRSNG---SKITEDEIKQYISKQVVFYKRINRVFFT 517
++ + +DE EV ++ + N KI D I+Q + +++ ++ ++
Sbjct: 359 NYLITLETVNNQDEXIVEVELSDLSTDNYIELEKIRRDIIRQ-LKDEILVTPKV-KLVKK 416
Query: 518 DSIPKAPSGKILRKDLR 534
S+P++ + KDLR
Sbjct: 417 GSLPQSEGKAVRVKDLR 433
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 249 ALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTV 306
A R G ++ K ++L+Q ++ + P +L++A + D SS+R
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIG 215
Query: 307 MSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVR 366
+ GA P ++ A+ ++ + YG++E M A E E K G T+
Sbjct: 216 IFGAEPWTNDMRVAIEQRMGIDAV-DIYGLSEV-----MGPGVASECVETKDGP--TIWE 267
Query: 367 NAEM-KIVDPDTGISLPRNQAGEIC 390
+ +I+DP+TG LP + GE+
Sbjct: 268 DHFYPEIIDPETGEVLPDGELGELV 292
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 249 ALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTV 306
A R G ++ K ++L+Q ++ + P L++A + D SS+R
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIXVTPSYXLSIADEIERQGLDPVQSSLRIG 215
Query: 307 MSGAAPMGKELEDAV--RAKLPHAKLGQGYGMTEA-GPVLSMCLAFAKEPFEIKSGACGT 363
+ GA P + A+ R + + YG++E GP A E E K G T
Sbjct: 216 IFGAEPWTNDXRVAIEQRXGIDAVDI---YGLSEVXGP------GVASECVETKDGP--T 264
Query: 364 VVRNAEM-KIVDPDTGISLPRNQAGEIC 390
+ + +I+DP+TG LP + GE+
Sbjct: 265 IWEDHFYPEIIDPETGEVLPDGELGELV 292
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 248 CALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVM 307
ALR+GA I+I+ D+ + +E+ ++ + + +P V+ VA SG ++ ++ +R +
Sbjct: 168 IALRIGARIIIISSRDL-ETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLG 226
Query: 308 SGAAPMGKEL 317
A +G L
Sbjct: 227 VNAFEIGSSL 236
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 248 CALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVM 307
ALR+GA I+I+ D+ + +E+ ++ + + +P V+ VA SG ++ ++ +R +
Sbjct: 168 IALRIGARIIIISSRDL-ETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLG 226
Query: 308 SGAAPMGKEL 317
A +G L
Sbjct: 227 VNAFEIGSSL 236
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 141/377 (37%), Gaps = 61/377 (16%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGL-----VTSVAQQVDGENPNLYLHKEDVILCVLPL 236
+ VV + SSGTTG P V T + + VT+ + + G P LH
Sbjct: 92 EQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGG 151
Query: 237 FHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVD 296
I+ A R+G ++ M K ++L++ ++ + P +L +
Sbjct: 152 LGIH------YGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQ 205
Query: 297 KYD--MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPF 354
D SS++ + GA P + L + V ++ L YG++E M A E
Sbjct: 206 GMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDAL-DIYGLSEV-----MGPGVACECV 259
Query: 355 EIKSGACGTVVRNAEM--KIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID 412
E K G V+ +I+DP TG LP GE+ T++
Sbjct: 260 ETKDGP---VIWEDHFYPEIIDPVTGEVLPDGSQGELVF-----------------TSLT 299
Query: 413 KEGW----LHTGDIGYIDDDDELF------IVDRLKELIKFKGFQVAPAELEAMLIAHPN 462
KE T D+ + I R +++ +G V P+++E +++A P
Sbjct: 300 KEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPL 359
Query: 463 ISDAAVVPM-KDEAAGEVPVAFVVRSNGSKITED--------EIKQYISKQVVFYKRINR 513
+S + + +D + +A +RS + D E++ I V +
Sbjct: 360 LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVT- 418
Query: 514 VFFTDSIPKAPSGKILR 530
V IP +GK R
Sbjct: 419 VLAAGGIPATATGKARR 435
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 63 RKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
R + +GL KLG+ KGDV L+ QN + F ++++G
Sbjct: 320 RIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLG 358
>pdb|3RQT|A Chain A, 1.5 Angstrom Crystal Structure Of The Complex Of Ligand
Binding Component Of Abc-Type Import System From
Staphylococcus Aureus With Nickel And Two Histidines
Length = 486
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 388 EICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYI 425
EI I+ ++GYL DR A + T G + GD GY
Sbjct: 358 EIDIKSVDDIEGYLKDRSAWDATXYSFGTIPRGDTGYF 395
>pdb|1J5S|A Chain A, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
pdb|1J5S|B Chain B, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
pdb|1J5S|C Chain C, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
Length = 463
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 380 SLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKE 439
+L ++ + + G I+ + DR +DKEGW Y++ E + D
Sbjct: 169 TLEHHRKAKEAVEGVTILPTWRPDRA---MNVDKEGWRE-----YVEKMGERYGED---- 216
Query: 440 LIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRS----------NG 489
GF L A+ +H + + V D A E V +V + +G
Sbjct: 217 TSTLDGF------LNALWKSHEHFKEHGCVA-SDHALLEPSVYYVDENRARAVHEKAFSG 269
Query: 490 SKITEDEIKQYISKQVVFYKRINR 513
K+T+DEI Y + +V + ++N+
Sbjct: 270 EKLTQDEINDYKAFMMVQFGKMNQ 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,752,660
Number of Sequences: 62578
Number of extensions: 647149
Number of successful extensions: 1818
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 107
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)