Query 009077
Match_columns 544
No_of_seqs 180 out of 2399
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 2E-87 6.8E-92 695.3 57.4 533 6-539 3-535 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 1.8E-81 6E-86 651.5 57.9 531 1-539 1-543 (548)
3 4fuq_A Malonyl COA synthetase; 100.0 8.2E-81 2.8E-85 640.2 50.8 496 29-539 4-500 (503)
4 3rix_A Luciferase, luciferin 4 100.0 3.7E-81 1.2E-85 650.4 45.7 527 7-541 3-543 (550)
5 3tsy_A Fusion protein 4-coumar 100.0 1.9E-81 6.5E-86 694.1 42.9 534 7-540 43-583 (979)
6 3g7s_A Long-chain-fatty-acid-- 100.0 7E-81 2.4E-85 648.1 44.2 515 13-541 8-544 (549)
7 3etc_A AMP-binding protein; ad 100.0 5.9E-79 2E-83 635.5 53.2 508 19-539 49-579 (580)
8 3r44_A Fatty acyl COA syntheta 100.0 1.9E-79 6.4E-84 632.2 45.6 501 21-540 12-514 (517)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.7E-79 2.3E-83 631.4 47.8 498 24-539 24-531 (539)
10 3o83_A Peptide arylation enzym 100.0 3.1E-80 1E-84 642.1 37.0 507 21-541 26-542 (544)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.9E-78 1.3E-82 621.2 51.4 487 25-538 2-503 (504)
12 1pg4_A Acetyl-COA synthetase; 100.0 9.5E-78 3.3E-82 634.9 48.7 507 26-540 77-622 (652)
13 3c5e_A Acyl-coenzyme A synthet 100.0 5.7E-77 2E-81 619.7 52.6 512 12-539 24-562 (570)
14 1v25_A Long-chain-fatty-acid-C 100.0 1.5E-78 5E-83 629.1 39.9 508 21-539 14-536 (541)
15 3fce_A D-alanine--poly(phospho 100.0 1.3E-77 4.6E-82 618.9 46.8 495 25-541 1-506 (512)
16 3ivr_A Putative long-chain-fat 100.0 1.1E-78 3.6E-83 626.6 38.5 497 23-542 4-504 (509)
17 3e7w_A D-alanine--poly(phospho 100.0 2.9E-77 9.8E-82 615.9 47.8 494 25-541 1-505 (511)
18 2v7b_A Benzoate-coenzyme A lig 100.0 3.8E-76 1.3E-80 610.5 53.1 499 21-536 19-529 (529)
19 3rg2_A Enterobactin synthase c 100.0 6.7E-77 2.3E-81 626.0 47.7 503 19-539 21-534 (617)
20 1ry2_A Acetyl-coenzyme A synth 100.0 1.1E-76 3.7E-81 626.9 46.3 510 25-540 82-638 (663)
21 3l8c_A D-alanine--poly(phospho 100.0 1.2E-76 4.3E-81 613.3 43.7 496 24-541 3-514 (521)
22 1amu_A GRSA, gramicidin synthe 100.0 4.7E-76 1.6E-80 611.9 46.0 491 15-538 29-528 (563)
23 4gr5_A Non-ribosomal peptide s 100.0 4.7E-77 1.6E-81 621.7 36.7 487 21-536 71-568 (570)
24 4dg8_A PA1221; ANL superfamily 100.0 1.5E-75 5.1E-80 612.9 43.7 485 19-540 21-514 (620)
25 3ipl_A 2-succinylbenzoate--COA 100.0 6.1E-76 2.1E-80 605.2 37.3 490 25-542 1-500 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2.5E-75 8.5E-80 599.3 35.3 475 24-535 21-504 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 2.9E-73 9.8E-78 597.8 33.3 505 22-543 8-571 (590)
28 2vsq_A Surfactin synthetase su 100.0 6.7E-72 2.3E-76 632.6 40.9 492 18-537 458-958 (1304)
29 3gqw_A Fatty acid AMP ligase; 100.0 7.2E-71 2.5E-75 578.4 44.5 503 19-540 15-564 (576)
30 3ite_A SIDN siderophore synthe 100.0 4.8E-72 1.6E-76 584.1 32.8 503 19-541 14-545 (562)
31 3t5a_A Long-chain-fatty-acid-- 100.0 6.6E-59 2.3E-63 476.5 30.2 394 24-436 23-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.1E-51 3.8E-56 403.4 22.1 316 181-540 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.4E-49 1.5E-53 397.7 24.4 331 178-532 81-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2E-48 6.8E-53 393.8 19.7 334 178-535 88-440 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 9.7E-48 3.3E-52 388.0 21.1 330 178-532 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 6.9E-31 2.4E-35 258.7 15.4 242 178-446 87-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 3.9E-14 1.3E-18 111.5 8.8 95 435-531 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 6.4E-14 2.2E-18 110.6 9.6 96 435-531 1-102 (109)
39 4eql_A 4-substituted benzoates 99.0 6.6E-09 2.2E-13 104.8 15.9 146 300-470 296-465 (581)
40 4b2g_A GH3-1 auxin conjugating 99.0 6E-09 2.1E-13 105.2 14.3 164 282-470 277-477 (609)
41 4epl_A Jasmonic acid-amido syn 98.9 7.8E-09 2.7E-13 103.9 11.6 162 300-487 301-488 (581)
42 2y27_A Phenylacetate-coenzyme 93.4 0.64 2.2E-05 45.7 12.1 90 51-141 108-199 (437)
43 2y4o_A Phenylacetate-coenzyme 92.5 0.92 3.1E-05 44.7 11.7 90 51-141 110-201 (443)
44 3qov_A Phenylacetate-coenzyme 92.3 0.87 3E-05 44.7 11.3 90 51-141 104-195 (436)
45 3ipl_A 2-succinylbenzoate--COA 84.4 13 0.00046 36.8 13.7 100 37-140 160-267 (501)
46 3hgu_A EHPF; phenazine, antibi 82.3 4 0.00014 38.8 8.5 87 51-139 109-220 (369)
47 2d1s_A Luciferase, luciferin 4 77.9 12 0.0004 37.9 10.6 98 40-139 192-298 (548)
48 3ni2_A 4-coumarate:COA ligase; 77.6 6.6 0.00022 39.6 8.7 99 179-287 34-133 (536)
49 3o83_A Peptide arylation enzym 77.2 23 0.00077 35.7 12.5 100 38-141 189-298 (544)
50 1mdb_A 2,3-dihydroxybenzoate-A 77.2 27 0.00093 35.0 13.1 101 37-141 179-289 (539)
51 3g7s_A Long-chain-fatty-acid-- 76.9 10 0.00034 38.3 9.8 106 180-289 32-138 (549)
52 3r44_A Fatty acyl COA syntheta 74.4 24 0.00083 35.1 11.8 98 38-140 168-274 (517)
53 3ivr_A Putative long-chain-fat 72.7 9.4 0.00032 38.1 8.3 97 180-288 19-116 (509)
54 3fce_A D-alanine--poly(phospho 72.0 16 0.00053 36.5 9.7 98 38-138 142-249 (512)
55 3rix_A Luciferase, luciferin 4 71.9 16 0.00053 36.9 9.8 89 51-140 208-297 (550)
56 1v25_A Long-chain-fatty-acid-C 71.0 14 0.00047 37.2 9.1 102 180-289 31-133 (541)
57 1t5h_X 4-chlorobenzoyl COA lig 69.6 15 0.00053 36.4 9.0 100 180-289 15-117 (504)
58 2v7b_A Benzoate-coenzyme A lig 68.9 13 0.00043 37.3 8.2 95 180-286 36-131 (529)
59 3t5a_A Long-chain-fatty-acid-- 68.6 15 0.0005 36.2 8.6 107 180-292 37-149 (480)
60 4gs5_A Acyl-COA synthetase (AM 67.8 24 0.00083 33.1 9.5 94 40-139 37-138 (358)
61 3e7w_A D-alanine--poly(phospho 67.0 26 0.00089 34.8 10.1 98 38-138 141-248 (511)
62 3etc_A AMP-binding protein; ad 66.2 13 0.00045 37.8 7.7 96 180-282 69-165 (580)
63 3rg2_A Enterobactin synthase c 66.0 71 0.0024 32.5 13.4 100 38-141 182-291 (617)
64 3c5e_A Acyl-coenzyme A synthet 65.6 12 0.00041 38.0 7.3 104 180-289 56-160 (570)
65 1ry2_A Acetyl-coenzyme A synth 64.8 17 0.00057 37.8 8.3 99 180-283 95-194 (663)
66 3kxw_A Saframycin MX1 syntheta 64.6 25 0.00085 35.7 9.6 101 37-140 164-276 (590)
67 1amu_A GRSA, gramicidin synthe 64.1 20 0.00068 36.3 8.6 97 180-288 52-149 (563)
68 3tbh_A O-acetyl serine sulfhyd 63.2 42 0.0014 31.2 10.0 91 41-133 36-127 (334)
69 4gr5_A Non-ribosomal peptide s 62.5 41 0.0014 33.9 10.7 100 37-140 211-319 (570)
70 4dg8_A PA1221; ANL superfamily 62.4 38 0.0013 34.7 10.4 114 38-155 162-286 (620)
71 1pg4_A Acetyl-COA synthetase; 59.7 22 0.00076 36.7 8.1 97 180-282 89-186 (652)
72 3tsy_A Fusion protein 4-coumar 59.6 22 0.00077 38.8 8.5 97 179-285 73-170 (979)
73 4fuq_A Malonyl COA synthetase; 55.5 21 0.00071 35.5 6.9 81 201-284 28-109 (503)
74 3nyq_A Malonyl-COA ligase; A/B 54.1 89 0.0031 30.8 11.3 99 37-140 152-259 (505)
75 3ezx_A MMCP 1, monomethylamine 53.7 1.1E+02 0.0036 26.3 10.5 93 227-321 93-195 (215)
76 3vc3_A Beta-cyanoalnine syntha 53.1 48 0.0016 30.9 8.5 81 51-133 61-142 (344)
77 4eez_A Alcohol dehydrogenase 1 50.8 90 0.0031 28.9 10.2 76 53-131 137-215 (348)
78 3l8c_A D-alanine--poly(phospho 42.9 1.4E+02 0.0047 29.5 10.7 100 38-138 143-252 (521)
79 3gqw_A Fatty acid AMP ligase; 42.2 39 0.0013 34.1 6.5 86 200-288 48-141 (576)
80 2q3b_A Cysteine synthase A; py 41.2 1.1E+02 0.0039 27.8 9.0 80 51-133 42-122 (313)
81 3jv7_A ADH-A; dehydrogenase, n 40.0 1.2E+02 0.0041 28.0 9.1 78 53-133 143-225 (345)
82 4aec_A Cysteine synthase, mito 39.4 1.1E+02 0.0036 29.6 8.6 63 70-132 166-229 (430)
83 1z7w_A Cysteine synthase; tran 38.6 1.2E+02 0.004 27.9 8.7 64 70-133 58-122 (322)
84 3ite_A SIDN siderophore synthe 38.4 87 0.003 31.4 8.5 86 51-136 193-284 (562)
85 3dzz_A Putative pyridoxal 5'-p 37.6 1.9E+02 0.0066 26.8 10.4 55 74-131 106-167 (391)
86 2egu_A Cysteine synthase; O-ac 37.0 1.2E+02 0.0041 27.5 8.5 90 41-133 30-120 (308)
87 1ve1_A O-acetylserine sulfhydr 36.9 2.3E+02 0.0078 25.6 10.3 64 69-133 51-117 (304)
88 1h2b_A Alcohol dehydrogenase; 36.7 1.3E+02 0.0044 28.0 8.8 62 68-132 176-239 (359)
89 2vsq_A Surfactin synthetase su 35.4 1.1E+02 0.0037 34.6 9.3 114 38-155 605-730 (1304)
90 3fpc_A NADP-dependent alcohol 35.3 87 0.003 29.1 7.3 59 69-131 159-218 (352)
91 2pqm_A Cysteine synthase; OASS 35.2 1.3E+02 0.0044 27.9 8.4 89 42-133 44-133 (343)
92 3ju7_A Putative PLP-dependent 34.6 93 0.0032 29.3 7.5 77 68-148 69-157 (377)
93 3i16_A Aluminum resistance pro 33.1 2.3E+02 0.0079 27.2 10.1 59 74-132 112-184 (427)
94 3hvy_A Cystathionine beta-lyas 32.9 2.6E+02 0.009 26.8 10.4 64 68-132 108-184 (427)
95 3b8x_A WBDK, pyridoxamine 5-ph 31.6 3E+02 0.01 25.6 10.7 71 73-147 76-156 (390)
96 3ri6_A O-acetylhomoserine sulf 31.3 2.9E+02 0.01 26.4 10.5 72 81-153 100-174 (430)
97 2v03_A Cysteine synthase B; py 31.0 2.1E+02 0.007 25.9 8.9 63 69-132 52-115 (303)
98 1pq4_A Periplasmic binding pro 30.9 1.1E+02 0.0036 27.7 6.8 98 55-156 167-270 (291)
99 3s2e_A Zinc-containing alcohol 30.7 1.1E+02 0.0038 28.2 7.2 76 52-131 139-217 (340)
100 3pc3_A CG1753, isoform A; CBS, 30.4 1.5E+02 0.0052 29.4 8.5 61 71-132 106-167 (527)
101 1kol_A Formaldehyde dehydrogen 30.0 1.4E+02 0.0048 28.2 8.0 55 69-127 178-233 (398)
102 2cvi_A 75AA long hypothetical 28.6 1.4E+02 0.005 20.5 6.9 50 450-509 15-64 (83)
103 3l6b_A Serine racemase; pyrido 28.4 1E+02 0.0034 28.7 6.4 59 76-135 75-133 (346)
104 3gi1_A LBP, laminin-binding pr 28.3 1.2E+02 0.0042 27.2 6.8 95 55-153 156-258 (286)
105 3ijw_A Aminoglycoside N3-acety 28.3 42 0.0014 29.9 3.5 25 63-87 18-42 (268)
106 3dwg_A Cysteine synthase B; su 26.8 2.1E+02 0.0072 26.2 8.3 64 69-133 64-128 (325)
107 1pl8_A Human sorbitol dehydrog 26.6 2.1E+02 0.007 26.5 8.3 59 69-131 164-223 (356)
108 2jtq_A Phage shock protein E; 26.6 1.2E+02 0.0039 21.0 5.1 46 51-103 22-67 (85)
109 1o69_A Aminotransferase; struc 26.3 4E+02 0.014 24.8 12.1 82 69-154 64-156 (394)
110 3sma_A FRBF; N-acetyl transfer 25.9 49 0.0017 29.8 3.5 31 50-87 19-49 (286)
111 1vj0_A Alcohol dehydrogenase, 25.6 1.8E+02 0.0062 27.3 7.8 59 69-131 187-247 (380)
112 2nyg_A YOKD protein; PFAM02522 25.5 50 0.0017 29.6 3.5 24 64-87 17-40 (273)
113 3ip1_A Alcohol dehydrogenase, 25.4 1.5E+02 0.005 28.2 7.1 55 73-131 210-265 (404)
114 3two_A Mannitol dehydrogenase; 25.3 1.5E+02 0.0051 27.4 7.1 74 52-129 149-225 (348)
115 3isl_A Purine catabolism prote 25.1 4.1E+02 0.014 24.7 10.4 88 62-151 72-171 (416)
116 1y7l_A O-acetylserine sulfhydr 24.7 3.9E+02 0.013 24.1 9.8 91 40-133 26-117 (316)
117 2dph_A Formaldehyde dismutase; 24.4 2.1E+02 0.0071 27.0 8.0 54 69-126 178-232 (398)
118 2cf5_A Atccad5, CAD, cinnamyl 24.3 1.1E+02 0.0036 28.6 5.8 62 68-132 171-233 (357)
119 4hvk_A Probable cysteine desul 24.1 3E+02 0.01 25.2 9.1 11 121-131 109-119 (382)
120 1wy5_A TILS, hypothetical UPF0 23.9 3.7E+02 0.013 24.4 9.3 71 61-131 7-91 (317)
121 3kki_A CAI-1 autoinducer synth 23.8 3.6E+02 0.012 25.1 9.8 55 74-132 140-194 (409)
122 1o58_A O-acetylserine sulfhydr 23.3 4.1E+02 0.014 23.8 9.7 62 69-133 58-120 (303)
123 3a2k_A TRNA(Ile)-lysidine synt 22.7 2.6E+02 0.0089 27.2 8.4 69 64-132 4-86 (464)
124 2prs_A High-affinity zinc upta 22.3 1.4E+02 0.0047 26.8 5.9 74 77-153 174-253 (284)
125 3uog_A Alcohol dehydrogenase; 22.2 3.4E+02 0.012 25.1 9.0 75 52-130 161-239 (363)
126 3tla_A MCCF; serine protease, 22.2 2.2E+02 0.0075 26.8 7.4 17 72-88 38-54 (371)
127 2e7j_A SEP-tRNA:Cys-tRNA synth 22.2 3.6E+02 0.012 24.6 9.2 55 74-131 90-154 (371)
128 1kmj_A Selenocysteine lyase; p 22.0 4.3E+02 0.015 24.3 9.9 12 75-86 111-122 (406)
129 4ej6_A Putative zinc-binding d 21.9 1.6E+02 0.0053 27.6 6.5 59 68-130 174-233 (370)
130 4d9i_A Diaminopropionate ammon 21.8 4.5E+02 0.015 24.8 9.8 61 76-137 110-171 (398)
131 3tqh_A Quinone oxidoreductase; 21.8 1.9E+02 0.0063 26.3 6.9 74 52-130 125-202 (321)
132 4h27_A L-serine dehydratase/L- 21.6 1.5E+02 0.0053 27.7 6.3 56 81-136 96-151 (364)
133 2zbc_A 83AA long hypothetical 21.4 2E+02 0.0068 19.5 6.7 49 450-508 15-63 (83)
134 3krt_A Crotonyl COA reductase; 21.3 3.4E+02 0.012 26.1 9.0 56 72-131 224-280 (456)
135 1yqd_A Sinapyl alcohol dehydro 21.1 1.8E+02 0.006 27.2 6.7 61 68-131 178-239 (366)
136 1ofu_X SULA, hypothetical prot 21.1 2.7E+02 0.0094 21.0 6.5 50 66-115 47-98 (119)
137 4h1h_A LMO1638 protein; MCCF-l 21.0 3E+02 0.01 25.2 8.0 16 73-88 8-23 (327)
138 3uko_A Alcohol dehydrogenase c 20.9 2.1E+02 0.0073 26.7 7.2 76 52-131 165-245 (378)
139 3cai_A Possible aminotransfera 20.9 4.4E+02 0.015 24.4 9.7 11 449-459 391-401 (406)
140 1f8f_A Benzyl alcohol dehydrog 20.8 3.2E+02 0.011 25.3 8.5 57 71-131 185-242 (371)
141 1zsy_A Mitochondrial 2-enoyl t 20.7 2.1E+02 0.007 26.5 7.0 78 53-131 140-223 (357)
142 3frk_A QDTB; aminotransferase, 20.7 2.6E+02 0.009 25.7 7.9 81 66-150 65-155 (373)
143 4dq6_A Putative pyridoxal phos 20.7 4.9E+02 0.017 23.8 10.0 45 75-122 112-164 (391)
144 1p0f_A NADP-dependent alcohol 20.6 2.4E+02 0.0082 26.2 7.6 57 71-131 186-243 (373)
145 1gu7_A Enoyl-[acyl-carrier-pro 20.5 4.2E+02 0.014 24.3 9.3 79 52-131 138-223 (364)
146 3jzl_A Putative cystathionine 20.5 4.3E+02 0.015 25.0 9.3 58 74-132 98-167 (409)
147 4a2c_A Galactitol-1-phosphate 20.4 3.8E+02 0.013 24.4 8.9 63 68-133 152-214 (346)
148 1t3i_A Probable cysteine desul 20.3 5.2E+02 0.018 23.9 10.6 12 119-130 138-149 (420)
149 3i71_A Ethanolamine utilizatio 20.3 27 0.00091 22.4 0.4 18 527-544 33-50 (68)
150 2o1e_A YCDH; alpha-beta protei 20.1 1.4E+02 0.0048 27.3 5.5 94 56-153 168-269 (312)
151 2h6e_A ADH-4, D-arabinose 1-de 20.1 2.8E+02 0.0096 25.4 7.8 54 73-130 168-222 (344)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2e-87 Score=695.27 Aligned_cols=533 Identities=74% Similarity=1.200 Sum_probs=486.3
Q ss_pred cccceEEecCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 009077 6 DHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQ 85 (544)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~ 85 (544)
++++.++++..++.+.|.++|+.++|.++++++|+++|+++...++++||+||.++++++|++|.++|+++||+|+++++
T Consensus 3 ~~~~~i~~~~~~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 82 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLP 82 (536)
T ss_dssp --CCCCBCCSSCCCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cccceEEecCCCCCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 35678999999999999999999999999999999999999766789999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHH
Q 009077 86 NCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSEL 165 (544)
Q Consensus 86 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (544)
|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+.+.......+++.++........++++
T Consensus 83 ~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (536)
T 3ni2_A 83 SSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSEL 162 (536)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHH
T ss_pred CcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHH
Confidence 99999999999999999999999999999999999999999999999988888777666677888887666666677776
Q ss_pred HhhccCCCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHH
Q 009077 166 ITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245 (544)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 245 (544)
.... ....+.....++++++++|||||||.||+|.++|+++...+..........+++.+++++++.+|++|.+++...
T Consensus 163 ~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 241 (536)
T 3ni2_A 163 TQAD-ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSI 241 (536)
T ss_dssp HTSC-GGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHT
T ss_pred hhcc-ccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHH
Confidence 4332 222334457789999999999999999999999999998887776655556678899999999999999999778
Q ss_pred HHHHHHhCcEEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHC
Q 009077 246 LLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325 (544)
Q Consensus 246 ~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~ 325 (544)
++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++++|.+++||+++++++.+.+++.|
T Consensus 242 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 321 (536)
T 3ni2_A 242 MLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKF 321 (536)
T ss_dssp HHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHC
Confidence 89999999999999999999999999999999999999999999998877777889999999999999999999999999
Q ss_pred CCCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChh
Q 009077 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDRE 405 (544)
Q Consensus 326 ~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~ 405 (544)
|++++++.||+||++.+++.+............+++|+|+++++++|+|++++.+++.|+.|||+++|++++.||+++++
T Consensus 322 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~ 401 (536)
T 3ni2_A 322 PQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPE 401 (536)
T ss_dssp TTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHH
T ss_pred CCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChh
Confidence 99999999999999987776654444455567789999999999999998889999999999999999999999999999
Q ss_pred hhhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEE
Q 009077 406 ATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485 (544)
Q Consensus 406 ~~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 485 (544)
.+...++.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++++
T Consensus 402 ~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 481 (536)
T 3ni2_A 402 ATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVV 481 (536)
T ss_dssp HHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEE
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 486 RSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 486 ~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
..++...+.++++++++++|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 482 ~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 482 KSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 988888899999999999999999999999999999999999999999998753
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.8e-81 Score=651.54 Aligned_cols=531 Identities=34% Similarity=0.526 Sum_probs=460.1
Q ss_pred CcccccccceEEecCCCCCCCCCCCCHHH-HHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 009077 1 MEAKQDHQEFIFRSKLPDIYIPNHLPLHT-YCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79 (544)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~ 79 (544)
|......++-++.+..+....|...|+.+ .+.++++++ +++|+++...++++||+||.++++++|+.|.++|+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 1 MENMENDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp ------CTTSEECCCCSSCCCSSCHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCCCCCCcceEecCCCCCCCCCCcCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 33444555667888877777777789999 899999999 9999998544789999999999999999999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhc--CcEEEEeCCCC-
Q 009077 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH--GARIVTIDPPP- 156 (544)
Q Consensus 80 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~v~~~~~~- 156 (544)
|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+++.....+....... ...++.++...
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999998877766554433 24555554321
Q ss_pred -CCCccHHHHHhhccCCCCCccCCC-----C-CCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeE
Q 009077 157 -ENCLHFSELITQADENEIPAVKIN-----P-DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDV 229 (544)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (544)
.....++++.........+..... + +++++++|||||||.||+|.++|+++...+........ .+++.++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~~~d~ 238 (548)
T 2d1s_A 160 YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY-GNQVSPGTA 238 (548)
T ss_dssp BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT-SCCCCTTCE
T ss_pred ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh-ccCCCccce
Confidence 113456666443322111212222 4 89999999999999999999999999888776654321 246789999
Q ss_pred EEEecchhhHHhhHHHHHHHHHhCcEEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEe
Q 009077 230 ILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSG 309 (544)
Q Consensus 230 ~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~ 309 (544)
+++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|++.++|+++..|.+........++++|.+++|
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 999999999999866677788 9999999998999999999999999999999999999998876666678999999999
Q ss_pred cccCCHHHHHHHHHHCCCCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeE
Q 009077 310 AAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEI 389 (544)
Q Consensus 310 G~~l~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel 389 (544)
|+++++++.+.+++.|+++++++.||+||++.+++.. .......+++|+|+|+++++|+|++++++++.|+.|||
T Consensus 318 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl 392 (548)
T 2d1s_A 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392 (548)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC-----CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred CccCCHHHHHHHHHHcCCCceeeccccccccceeeec-----CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEE
Confidence 9999999999999999889999999999998766542 12234567899999999999999878999999999999
Q ss_pred EEecCcccccccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEE
Q 009077 390 CIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVV 469 (544)
Q Consensus 390 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~ 469 (544)
+++|++++.||+++++.+...|+.+|||+|||+|+++++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 393 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~ 472 (548)
T 2d1s_A 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472 (548)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEE
T ss_pred EECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcccCCCccc-EEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 470 PMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRIN-RVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 470 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
+.+++..++.++++|++.++...+.++++++++++|+.|++|. .++++++||+|++||++|++|++++.+
T Consensus 473 ~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 9999888999999999988777889999999999999999999 999999999999999999999999864
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.2e-81 Score=640.19 Aligned_cols=496 Identities=26% Similarity=0.416 Sum_probs=438.9
Q ss_pred HHHHhhhccCCCccEEEeC-CCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeec
Q 009077 29 TYCFENISQFADRPCIING-PTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTA 107 (544)
Q Consensus 29 ~~l~~~a~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 107 (544)
+++.+.++++|+++++... ..++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 4678889999999998742 236899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhccCCCCCccCCCCCCEEEE
Q 009077 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVAL 187 (544)
Q Consensus 108 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 187 (544)
+|.++.+++.++++.++++++|+++.....+..........+..++.... ..+.+. ........+.....+++++++
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~d~a~i 160 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGR--GSLTDA-AAGASEAFATIDRGADDLAAI 160 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSC--SHHHHH-HHTSCSCCCCCCCCTTSEEEE
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcc--cccchh-hhcCCCCcCcCCCCCCCeEEE
Confidence 99999999999999999999999988766655555544555555543322 122222 112222233445678999999
Q ss_pred ecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEccCcCHHHH
Q 009077 188 PYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKL 267 (544)
Q Consensus 188 ~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~ 267 (544)
+|||||||.||+|.++|+++......... .+++.++|++++.+|++|.+|++...+.++..|+++++.+.+++..+
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 236 (503)
T 4fuq_A 161 LYTSGTTGRSKGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKI 236 (503)
T ss_dssp EECC--CCSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHH
T ss_pred EECCCcccCCeEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHH
Confidence 99999999999999999999988877766 34588999999999999999986778889999999999999999999
Q ss_pred HHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccccCccccccc
Q 009077 268 MELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCL 347 (544)
Q Consensus 268 ~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 347 (544)
++.++ ++|++.++|+++..+++........++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+..
T Consensus 237 ~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~-- 311 (503)
T 4fuq_A 237 LDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN-- 311 (503)
T ss_dssp HHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--
T ss_pred HHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--
Confidence 99998 899999999999999998877777788999999999999999999999998 8999999999999865432
Q ss_pred cccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCceecCceEEEcC
Q 009077 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDD 427 (544)
Q Consensus 348 ~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~ 427 (544)
........+++|+|+++++++|+|++++++++.|+.|||+++|+++++||+++++.+...|..+|||+|||+|++++
T Consensus 312 ---~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~ 388 (503)
T 4fuq_A 312 ---PYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE 388 (503)
T ss_dssp ---CSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT
T ss_pred ---CCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC
Confidence 12334556889999999999999988899999999999999999999999999999999998899999999999999
Q ss_pred CCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcccC
Q 009077 428 DDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVF 507 (544)
Q Consensus 428 ~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~ 507 (544)
||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++++++..++.++++++..++...+.++++++++++|+.
T Consensus 389 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~ 468 (503)
T 4fuq_A 389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAK 468 (503)
T ss_dssp TCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCG
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCcccEEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 508 YKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 508 ~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
|++|+.++++++||+|++||++|++|+++|.+
T Consensus 469 ~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 469 FKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp GGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.7e-81 Score=650.38 Aligned_cols=527 Identities=34% Similarity=0.531 Sum_probs=356.5
Q ss_pred ccceEEecCCCCCCCCCCCCHHHHHHhhhccCCCccEEE---eCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 009077 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCII---NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLL 83 (544)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~ 83 (544)
...+++.+..+..+.++ .|+.+.|.++++++|+++|++ +...++++||+||.++++++|++|+++|+++||+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~-~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~ 81 (550)
T 3rix_A 3 DAKNIKKGPAPFYPLED-GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVC 81 (550)
T ss_dssp CGGGSEECCCCSSCCCC-SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred cccceeeCCCCCCCccc-CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 45667778777777766 899999999999999999975 54456899999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhc--CcEEEEeCCC--CCCC
Q 009077 84 LQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH--GARIVTIDPP--PENC 159 (544)
Q Consensus 84 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~v~~~~~--~~~~ 159 (544)
++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+++.....+....... ...++.++.. ....
T Consensus 82 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (550)
T 3rix_A 82 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161 (550)
T ss_dssp CSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTB
T ss_pred cCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCc
Confidence 99999999999999999999999999999999999999999999999999888777766544 2344544432 2234
Q ss_pred ccHHHHHhhccCCC------CCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEe
Q 009077 160 LHFSELITQADENE------IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233 (544)
Q Consensus 160 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
..+.++........ .+.....++++++++|||||||.||+|.++|+++............ ..++.+++++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 240 (550)
T 3rix_A 162 QSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF-GNQIIPDTAILSV 240 (550)
T ss_dssp CBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEEC
T ss_pred ccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc-cccCCCCcEEEEe
Confidence 55666644332211 1112234578999999999999999999999999887776554321 2457899999999
Q ss_pred cchhhHHhhHHHHHHHHHhCcEEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccC
Q 009077 234 LPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPM 313 (544)
Q Consensus 234 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l 313 (544)
+|++|.+|+ ...+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++++|.+++||+++
T Consensus 241 ~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l 319 (550)
T 3rix_A 241 VPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPL 319 (550)
T ss_dssp SCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCC
T ss_pred chHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCC
Confidence 999999998 5677889999999999999999999999999999999999999999998877777789999999999999
Q ss_pred CHHHHHHHHHHCCCCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEec
Q 009077 314 GKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393 (544)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~ 393 (544)
++++.+++.+.|+...+++.||+||++.+++.. .......+++|+|+++++++|+|++++.+++.|+.|||+++|
T Consensus 320 ~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g 394 (550)
T 3rix_A 320 SKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-----PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG 394 (550)
T ss_dssp CHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC-----CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEES
T ss_pred CHHHHHHHHHHcCCCccccccCcCccccceecC-----CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeC
Confidence 999999999999555699999999999766653 223456689999999999999998889999999999999999
Q ss_pred CcccccccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeC
Q 009077 394 AQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKD 473 (544)
Q Consensus 394 ~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~ 473 (544)
++++.||+++++.+...++.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|+++++
T Consensus 395 ~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 474 (550)
T 3rix_A 395 PMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPD 474 (550)
T ss_dssp TTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------------------------------------
T ss_pred CCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeec
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEecCCCCCCHHHHHHHHHhcccCCCccc-EEEEecCCCCCCCcccchHHHHhHHhhcc
Q 009077 474 EAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRIN-RVFFTDSIPKAPSGKILRKDLRTKLAAGD 541 (544)
Q Consensus 474 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 541 (544)
+..++.++++|++.++...+.++++++++.+++.++.|. .++++++||+|++||++|++|++++.+..
T Consensus 475 ~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 475 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 989999999999988878888999999999999886555 69999999999999999999999987654
No 5
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.9e-81 Score=694.12 Aligned_cols=534 Identities=74% Similarity=1.184 Sum_probs=382.9
Q ss_pred ccceEEecCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 009077 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQN 86 (544)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~ 86 (544)
....++.+..++.+.|.++|+.++|.++++++|+++|+++...++++||+||.++++++|++|.++|+++||+|+++++|
T Consensus 43 ~~~~~~~~~~~~~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n 122 (979)
T 3tsy_A 43 NSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN 122 (979)
T ss_dssp --CCCBCCSSCCCCCCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSS
T ss_pred CCCceeecCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCC
Confidence 44567888889999999999999999999999999999997767899999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCC-----CCCcc
Q 009077 87 CPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPP-----ENCLH 161 (544)
Q Consensus 87 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~ 161 (544)
++++++++|||+++|+++||++|.++.+++.++++.++++++|++....+.+..........++.++... .....
T Consensus 123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (979)
T 3tsy_A 123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR 202 (979)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEE
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCccccc
Confidence 9999999999999999999999999999999999999999999998887766666555566666665431 22334
Q ss_pred HHHHHhhccC--CCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhH
Q 009077 162 FSELITQADE--NEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHI 239 (544)
Q Consensus 162 ~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (544)
+.++...... ...+.....++++++++|||||||.||+|.++|+++...+..........+++.+++++++.+|++|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 282 (979)
T 3tsy_A 203 FTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282 (979)
T ss_dssp GGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred HHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHH
Confidence 4444222111 12234456789999999999999999999999999998888776655556678999999999999999
Q ss_pred HhhHHHHHHHHHhCcEEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHH
Q 009077 240 YSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELED 319 (544)
Q Consensus 240 ~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~ 319 (544)
+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+
T Consensus 283 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 362 (979)
T 3tsy_A 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELED 362 (979)
T ss_dssp HHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHH
T ss_pred HHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHH
Confidence 99977889999999999999999999999999999999999999999999998777777789999999999999999999
Q ss_pred HHHHHCCCCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCccccc
Q 009077 320 AVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399 (544)
Q Consensus 320 ~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g 399 (544)
++.+.||++++++.||+||++.+++.+............+++|+|+++++++|+|++++.+++.|+.|||+|+|+++++|
T Consensus 363 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~G 442 (979)
T 3tsy_A 363 AVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442 (979)
T ss_dssp HHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCcccc
Confidence 99999999999999999999987766544444455566789999999999999998889999999999999999999999
Q ss_pred ccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCce
Q 009077 400 YLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEV 479 (544)
Q Consensus 400 y~~~~~~~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 479 (544)
|+++++.+...|+.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.
T Consensus 443 Y~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~ 522 (979)
T 3tsy_A 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEV 522 (979)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------
T ss_pred ccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhc
Q 009077 480 PVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAG 540 (544)
Q Consensus 480 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 540 (544)
++++|+..++...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus 523 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 523 PVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 9999998877778889999999999999999999999999999999999999999998764
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=7e-81 Score=648.13 Aligned_cols=515 Identities=31% Similarity=0.535 Sum_probs=410.3
Q ss_pred ecCCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 009077 13 RSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTG------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQN 86 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~ 86 (544)
....|+.+.|+ +|+.++|.++++++|+++|+++.+.+ +++||+||.++++++|++|.++|+++||+|+|+++|
T Consensus 8 ~~~~p~~~~~~-~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 86 (549)
T 3g7s_A 8 KIGFPSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPN 86 (549)
T ss_dssp CCCCCCCCCCC-CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred ccCCCCCCcCC-CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 34456666665 89999999999999999999987422 899999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCc-EEEEeCCCCCCCccHHHH
Q 009077 87 CPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGA-RIVTIDPPPENCLHFSEL 165 (544)
Q Consensus 87 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~ 165 (544)
++++++++|||+++|+++||++|.++.+++.++++.++++++|++......+......... .++.++. ....++++
T Consensus 87 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 163 (549)
T 3g7s_A 87 SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG---EVNSLSEV 163 (549)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC---SSSCHHHH
T ss_pred CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC---CCcCHHHH
Confidence 9999999999999999999999999999999999999999999999988877776655543 3344432 34566666
Q ss_pred HhhccCCCCCccCCCC-CCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHH
Q 009077 166 ITQADENEIPAVKINP-DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS 244 (544)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 244 (544)
....... .+.....+ +++++++|||||||.||+|.++|+++...+..... .+++.++|++++.+|++|..++..
T Consensus 164 ~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~~~ 238 (549)
T 3g7s_A 164 MDSGSED-FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAV----ATGLSHMDTIVGCMPMFHSAEFGL 238 (549)
T ss_dssp HHHSCSC-CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHH----HHCCCTTCEEECCSCTTSHHHHHH
T ss_pred HhcCccc-cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHH----HcCCCCCCEEEEeCcHHHHHHHHH
Confidence 5443332 22333344 89999999999999999999999999988877665 345889999999999999999854
Q ss_pred HHHHHHHhCcEEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCC--CCCCCceEEEEecccCCHHHHHHHH
Q 009077 245 VLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDK--YDMSSIRTVMSGAAPMGKELEDAVR 322 (544)
Q Consensus 245 ~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~--~~l~~l~~~~~~G~~l~~~~~~~~~ 322 (544)
++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++...... ..++++|.+++||+++++++.+.+.
T Consensus 239 -~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~ 317 (549)
T 3g7s_A 239 -VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLL 317 (549)
T ss_dssp -HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred -HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHH
Confidence 8889999999999999999999999999999999999999999987654333 5678999999999999999999999
Q ss_pred HH----CC--CCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcc
Q 009077 323 AK----LP--HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQI 396 (544)
Q Consensus 323 ~~----~~--~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~ 396 (544)
+. ++ ++++++.||+||++.+++.... .......++|.|+++++++|+|++++++++.|+.|||+|+|+++
T Consensus 318 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v 393 (549)
T 3g7s_A 318 KLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNI 393 (549)
T ss_dssp HHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTS
T ss_pred HHHHhhcCCccccccceEeccccchhhhcCCc----cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcch
Confidence 87 62 3899999999999977665321 12245678999999999999998889999999999999999999
Q ss_pred cccccCChhhhhhhcC--CCC--ceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeee
Q 009077 397 MKGYLNDREATETTID--KEG--WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMK 472 (544)
Q Consensus 397 ~~gy~~~~~~~~~~~~--~~~--~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 472 (544)
+.||+++++.+...|. .+| ||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 394 ~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 473 (549)
T 3g7s_A 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKP 473 (549)
T ss_dssp CSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCC
T ss_pred hhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 9999999999988773 566 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEecCC--CCCCHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhcc
Q 009077 473 DEAAGEVPVAFVVRSNG--SKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGD 541 (544)
Q Consensus 473 ~~~~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 541 (544)
++..++.+++++++.++ ...+.++|+++++++|+.|++|+.++++++||+|++||++|++|++++....
T Consensus 474 ~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 474 DEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp C------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC--------------------
T ss_pred ccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccc
Confidence 98889999999998876 5688899999999999999999999999999999999999999999887654
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5.9e-79 Score=635.45 Aligned_cols=508 Identities=24% Similarity=0.356 Sum_probs=421.4
Q ss_pred CCCCCCCCHH-HHHHhhhccCCCccEEEeCC---CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 009077 19 IYIPNHLPLH-TYCFENISQFADRPCIINGP---TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAF 94 (544)
Q Consensus 19 ~~~~~~~~~~-~~l~~~a~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 94 (544)
++.|+..|+. +.|+++|+++|+++|+++.+ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 49 ~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 49 ILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp BCCCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred CCCcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 3455667777 99999999999999998632 2478999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchh--HHHHHHHhhcC---cEEEEeCCC-CCCCccHHHHHhh
Q 009077 95 LGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN--DKVRDLSEHHG---ARIVTIDPP-PENCLHFSELITQ 168 (544)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~---~~~v~~~~~-~~~~~~~~~~~~~ 168 (544)
|||+++|++++|++|.++.+++.++++.++++++|++.+.. ..+........ ...+.++.. ......+.+.+..
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEE 208 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHH
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhh
Confidence 99999999999999999999999999999999999988754 55555544332 455555543 3445667666544
Q ss_pred ccCCCCCc---cCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHH
Q 009077 169 ADENEIPA---VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245 (544)
Q Consensus 169 ~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 245 (544)
.......+ ....++++++++|||||||.||+|.++|.++......... .+++.+++++++..|++|..+++..
T Consensus 209 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (580)
T 3etc_A 209 SSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY----WQNVEDDGLHYTVADSGWGKCVWGK 284 (580)
T ss_dssp SCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHT----TSCCCTTCEEEECCCTTSTHHHHHT
T ss_pred CCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHH----hhCCCCCceEEEeCChHHHHHHHHH
Confidence 33322212 3567899999999999999999999999988776655433 3457899999999999998888777
Q ss_pred HHHHHHhCcEEEEc--cCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHH
Q 009077 246 LLCALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRA 323 (544)
Q Consensus 246 ~~~~l~~g~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~ 323 (544)
++.++..|+++++. ..+++..+++.++++++|++.++|+++..|.+. ......++++|.+++|||++++++.+++.+
T Consensus 285 ~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 363 (580)
T 3etc_A 285 LYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLE 363 (580)
T ss_dssp THHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHH
Confidence 88999999999887 468999999999999999999999999999886 344556889999999999999999999999
Q ss_pred HCCCCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEec-----Ccccc
Q 009077 324 KLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG-----AQIMK 398 (544)
Q Consensus 324 ~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~ 398 (544)
.+ ++++++.||+||++..++.. .......+++|+|+|+++++|+|+ ++++++.|+.|||+++| +++++
T Consensus 364 ~~-g~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~ 436 (580)
T 3etc_A 364 FT-GIKLMEGFGQTETVVTIATF-----PWMEPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFV 436 (580)
T ss_dssp HH-SCCCEEEECCTTSSCCEECC-----TTSCCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCCC
T ss_pred Hh-CCeEecccccccccceeecC-----CCCCCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeeec
Confidence 88 89999999999998655433 223456789999999999999994 68999999999999997 78999
Q ss_pred cccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCc
Q 009077 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGE 478 (544)
Q Consensus 399 gy~~~~~~~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~ 478 (544)
||+++++.+...| .+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++++++..++
T Consensus 437 gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~ 515 (580)
T 3etc_A 437 HYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQ 515 (580)
T ss_dssp EETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEE
T ss_pred cccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCc
Confidence 9999999999998 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCCCC---HHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 479 VPVAFVVRSNGSKIT---EDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 479 ~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
.++++|++.++.... .++|++++++.|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 516 ~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 516 VIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 999999998775544 3689999999999999999999999999999999999999998764
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.9e-79 Score=632.24 Aligned_cols=501 Identities=29% Similarity=0.470 Sum_probs=434.3
Q ss_pred CCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhh
Q 009077 21 IPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYI 100 (544)
Q Consensus 21 ~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 100 (544)
.+...|+.++|.++++++|+++|+++.+.+.++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 44568999999999999999999998744459999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCc--EEEEeCCCCCCCccHHHHHhhccCCCCCccC
Q 009077 101 GATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGA--RIVTIDPPPENCLHFSELITQADENEIPAVK 178 (544)
Q Consensus 101 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (544)
|+++||++|.++.+++.++++.++++++|++......+......... .++.+. ....+.+.+.. .....+...
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~ 166 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI----GADSLAERLRS-AAADEPAVE 166 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE----EHHHHHHHHHH-CCCCCCCCC
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc----CcccHHHHhhc-cCcCCCCCC
Confidence 99999999999999999999999999999999887776665433211 111110 01123333222 222334456
Q ss_pred CCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEE
Q 009077 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (544)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~ 258 (544)
..++++++++|||||||.||+|.++|+++...+..... .+++.++|++++.+|++|..++...++..+ .|+++++
T Consensus 167 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~ 241 (517)
T 3r44_A 167 CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS----TIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLIS 241 (517)
T ss_dssp CCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH----HSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEE
T ss_pred CCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH----hcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEE
Confidence 77899999999999999999999999999988877765 345889999999999999999855555555 9999999
Q ss_pred ccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccc
Q 009077 259 MQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338 (544)
Q Consensus 259 ~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE 338 (544)
.+.+++..+++.+.++++|++.++|+++..|.+........++++|.+++||+++++++.+.+.+. ++++++.||+||
T Consensus 242 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE 319 (517)
T 3r44_A 242 MPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTE 319 (517)
T ss_dssp CSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGG
T ss_pred eCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccc
Confidence 999999999999999999999999999999988766556678899999999999999999999886 899999999999
Q ss_pred cCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCcee
Q 009077 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLH 418 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 418 (544)
++..++.... .......++.|+|+++++++++| +++.+++.| .|||+++|++++.||+++++.+...| .+|||+
T Consensus 320 ~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~ 393 (517)
T 3r44_A 320 SCGGGTLLLS---EDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFR 393 (517)
T ss_dssp GTTCEEEECG---GGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEE
T ss_pred cccceeecCC---ccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEe
Confidence 9876654321 12234568899999999999999 567888888 89999999999999999999999998 789999
Q ss_pred cCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCHHHHH
Q 009077 419 TGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIK 498 (544)
Q Consensus 419 TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 498 (544)
|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.+++++ ..++...+.++++
T Consensus 394 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~ 472 (517)
T 3r44_A 394 TGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIV 472 (517)
T ss_dssp EEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHH
T ss_pred cceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888888888 5666778899999
Q ss_pred HHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhc
Q 009077 499 QYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAG 540 (544)
Q Consensus 499 ~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 540 (544)
++++++|+.|++|+.++++++||+|++||++|++|+++|.+.
T Consensus 473 ~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 473 EYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp HHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred HHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999764
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.7e-79 Score=631.38 Aligned_cols=498 Identities=26% Similarity=0.416 Sum_probs=429.4
Q ss_pred CCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCe
Q 009077 24 HLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103 (544)
Q Consensus 24 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 103 (544)
..|+.++|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 479999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCceEEEEecchh-----HHHHHHHhhc-CcE-EEEeCCCCCCCccHHHHHhhccCCCCCc
Q 009077 104 STTANPFYTPPEIAKQAIASKAKIIITQAVYN-----DKVRDLSEHH-GAR-IVTIDPPPENCLHFSELITQADENEIPA 176 (544)
Q Consensus 104 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (544)
+||++|.++.+++.++++.++++++|+++... ..+....... ..+ ++..+.. . .+.++... .....+.
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~-~~~~~~~ 176 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-E---EFLPLEDL-HTEPVKL 176 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-T---TSEEGGGC-CCCCCCC
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-c---chhhhhhc-ccccccc
Confidence 99999999999999999999999999987532 2222332222 222 2222221 1 12222111 1111122
Q ss_pred cCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHH-HHHHHHHhCcE
Q 009077 177 VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRVGAA 255 (544)
Q Consensus 177 ~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~ 255 (544)
....++++++++|||||||.||+|.++|+++...+..... .+++.+++++++.+|++|.+++.. .++.++..|++
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~ 252 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGR 252 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCE
Confidence 3467899999999999999999999999999888776655 345789999999999999999855 68899999999
Q ss_pred EEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceecccc
Q 009077 256 ILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335 (544)
Q Consensus 256 ~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG 335 (544)
+++.+.+++..+++.++++++|++.++|+++..+++........++++|.+++||+++++++.+++++.+ ++++++.||
T Consensus 253 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG 331 (539)
T 1mdb_A 253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFG 331 (539)
T ss_dssp EEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEc
Confidence 9999999999999999999999999999999999887655556689999999999999999999999999 899999999
Q ss_pred ccccCccccccccccCCCCccCCCeeeeccCCc-eEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCC
Q 009077 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNA-EMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414 (544)
Q Consensus 336 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~-~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 414 (544)
+||++..+... ........+++|+|+++. +++|+| +++++++.|+.|||+++|+++++||+++++.+...|..+
T Consensus 332 ~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 406 (539)
T 1mdb_A 332 MAEGLVNYTRL----DDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED 406 (539)
T ss_dssp CTTSCEEECCT----TSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred CCCCcccccCC----CCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCC
Confidence 99965322211 111122346789999764 899999 578999999999999999999999999999999999889
Q ss_pred CceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCH
Q 009077 415 GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE 494 (544)
Q Consensus 415 ~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 494 (544)
|||+|||+|++++||++++.||+||+||.+|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++++. +...+.
T Consensus 407 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~-~~~~~~ 485 (539)
T 1mdb_A 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR-DEAPKA 485 (539)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-SSCCCH
T ss_pred CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEEC-CCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999988889999999987 456788
Q ss_pred HHHHHHHHhc-ccCCCcccEEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 495 DEIKQYISKQ-VVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 495 ~~l~~~l~~~-l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
++++++++++ |+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 9999999998 99999999999999999999999999999998865
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.1e-80 Score=642.14 Aligned_cols=507 Identities=23% Similarity=0.346 Sum_probs=344.5
Q ss_pred CCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhh
Q 009077 21 IPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYI 100 (544)
Q Consensus 21 ~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 100 (544)
.+.+.|+.++|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 456689999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCHHHHHHHHHhcCceEEEEecchh-----HHHHHHHhhc-C-cEEEEeCCCCCCCccHHHHHhhccCCC
Q 009077 101 GATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN-----DKVRDLSEHH-G-ARIVTIDPPPENCLHFSELITQADENE 173 (544)
Q Consensus 101 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 173 (544)
|++++|+++.++.+++.++++.++++++|++.... ..+....... . ..++.++.. .....+.++........
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-ATDFGLLDWIETPAETF 182 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-TTSEEHHHHHHSCCSSC
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-ccccchhhhhhcccccc
Confidence 99999999999999999999999999999987653 3333332222 2 233344332 22233444433222222
Q ss_pred CCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHH-HHHHHHHh
Q 009077 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRV 252 (544)
Q Consensus 174 ~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~ 252 (544)
.+.....++++++++|||||||.||+|.++|+++...+..... .+++.++|++++.+|++|.+++.. .++.++..
T Consensus 183 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 258 (544)
T 3o83_A 183 VDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE----ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258 (544)
T ss_dssp CCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred cccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH----HhCCCCCCeEEEecCcceEeecchHHHHHHHHc
Confidence 2234567899999999999999999999999999988887766 345889999999999999988854 58889999
Q ss_pred CcEEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceec
Q 009077 253 GAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332 (544)
Q Consensus 253 g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~ 332 (544)
|+++++.+.+++..+++.++++++|++.++|+++..+++........++++|.+++||+++++++.+.+.+.+ ++++++
T Consensus 259 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~ 337 (544)
T 3o83_A 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQ 337 (544)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEe
Confidence 9999999999999999999999999999999999999988766666788999999999999999999999999 899999
Q ss_pred cccccccCccccccccccCCCCccCCCeeeecc-CCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhc
Q 009077 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVV-RNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411 (544)
Q Consensus 333 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 411 (544)
.||+||++..+... .........+.|+|+ ++++++|+| +++++++.|+.|||+++|++++.||+++++.+...|
T Consensus 338 ~YG~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 412 (544)
T 3o83_A 338 VFGMAEGLVNYTRL----DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVF 412 (544)
T ss_dssp EEECTTSCEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHB
T ss_pred eeccccccceeecC----CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhC
Confidence 99999987543321 111223346789996 899999999 688999999999999999999999999999999999
Q ss_pred CCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCC
Q 009077 412 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSK 491 (544)
Q Consensus 412 ~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 491 (544)
+.+|||+|||+|++++||++++.||+||+||.+|++|+|.+||++|.++|+|.+++|++++++..++.++++++..+ ..
T Consensus 413 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~ 491 (544)
T 3o83_A 413 DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PE 491 (544)
T ss_dssp CTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------------
T ss_pred CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CC
Confidence 89999999999999999999999999999999999999999999999999999999999999988999999998765 45
Q ss_pred CCHHHHHHHHHh-cccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhcc
Q 009077 492 ITEDEIKQYISK-QVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGD 541 (544)
Q Consensus 492 ~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 541 (544)
.+.+++++++++ .|+.|++|..++++++||+|++||++|++|++++.++.
T Consensus 492 ~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 492 LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp ---------------------------------------------------
T ss_pred CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 667789999988 79999999999999999999999999999999998754
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.9e-78 Score=621.23 Aligned_cols=487 Identities=24% Similarity=0.369 Sum_probs=422.5
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeE
Q 009077 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104 (544)
Q Consensus 25 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (544)
+|+.++|.++++++|+++|+++...++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999987556899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEE--ecchhHHH-HHHHhhcCcEEEEeCCCCCCCccHHHHHhhcc----CCCCCcc
Q 009077 105 TTANPFYTPPEIAKQAIASKAKIIIT--QAVYNDKV-RDLSEHHGARIVTIDPPPENCLHFSELITQAD----ENEIPAV 177 (544)
Q Consensus 105 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 177 (544)
+|++|.++.+++.++++.++++++++ +....+.+ ... ...+++ .++++..... ....+..
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 148 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGARII----------FLGDLVRDGEPYSYGPPIEDP 148 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCEEE----------EGGGTEETTEECCCSCCCCCC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccceeE----------EecchhhcCcccccCCccCCC
Confidence 99999999999999999999999999 66654443 211 123332 2223322110 1111223
Q ss_pred CCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccC--CCCeEEEEecchhhHHhhHHHHHHHHHhCcE
Q 009077 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL--HKEDVILCVLPLFHIYSLNSVLLCALRVGAA 255 (544)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~ 255 (544)
...++++++++|||||||.||+|.++|+++...+...... +++ .+++++++.+|++|..|+...++.++..|++
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQ----VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHT----TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCE
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHh----hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCce
Confidence 4568999999999999999999999999998887766553 345 7899999999999999986778899999999
Q ss_pred EEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCC--CCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceecc
Q 009077 256 ILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQG 333 (544)
Q Consensus 256 ~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~ 333 (544)
+++.+.+++..+++.++++++|++.++|+++..|++... .....++++|.+++||+++++++.+.+++.+ ++.+++.
T Consensus 225 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 303 (504)
T 1t5h_X 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNI 303 (504)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeee
Confidence 999999999999999999999999999999999988652 2344678999999999999999999999999 7899999
Q ss_pred ccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCC--CCCCCCCceeEEEe-cCcccccccCChhhhhhh
Q 009077 334 YGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTG--ISLPRNQAGEICIR-GAQIMKGYLNDREATETT 410 (544)
Q Consensus 334 yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~--~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~ 410 (544)
||+||++ ++... . ....++.|.|.++++++++|.+.+ ++++.|+.|||+++ |+.++.||+++++.+...
T Consensus 304 YG~TE~~-~~~~~-~------~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~ 375 (504)
T 1t5h_X 304 YGTTEAM-NSLYM-R------QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375 (504)
T ss_dssp EEETTTE-EEEEE-E------SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred ecccccc-ccccc-c------CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhh
Confidence 9999993 22211 0 234578999999999999995332 88999999999999 999999999999999998
Q ss_pred cCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCC
Q 009077 411 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGS 490 (544)
Q Consensus 411 ~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 490 (544)
| .+|||+|||+|++++||++++.||+||+||.+|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.++.
T Consensus 376 f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 454 (504)
T 1t5h_X 376 L-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE 454 (504)
T ss_dssp E-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC
T ss_pred h-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc
Confidence 8 789999999999999999999999999999999999999999999999999999999999998899999999998877
Q ss_pred CCCHHHHHHHHHh-cccCCCcccEEEEecCCCCCCCcccchHHHHhHHh
Q 009077 491 KITEDEIKQYISK-QVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLA 538 (544)
Q Consensus 491 ~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~ 538 (544)
..+.++++++++. +|+.|++|+.++++++||+|++||++|++|++++.
T Consensus 455 ~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 455 TLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred CcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 7889999999998 99999999999999999999999999999999875
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=9.5e-78 Score=634.93 Aligned_cols=507 Identities=24% Similarity=0.359 Sum_probs=431.4
Q ss_pred CHHHHHHhhhccCCCccEEEeCC----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhC
Q 009077 26 PLHTYCFENISQFADRPCIINGP----TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101 (544)
Q Consensus 26 ~~~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 101 (544)
++.+.|+++++++|+++|+++.. .++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 46778889999999999999732 24789999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCHHHHHHHHHhcCceEEEEecchh---------HHHHHHHhhc----CcEEEEeCCCC-------CCCcc
Q 009077 102 ATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN---------DKVRDLSEHH----GARIVTIDPPP-------ENCLH 161 (544)
Q Consensus 102 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~v~~~~~~-------~~~~~ 161 (544)
++++|+++.++.+++.++++.++++++|+++... ..+.+..... ...++.++... .....
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 9999999999999999999999999999987642 2333333221 13455554321 11235
Q ss_pred HHHHHhhccCCCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHh
Q 009077 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241 (544)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 241 (544)
|++++.... ...+.....++++++++|||||||.||+|.++|+++.......... .+++.++|++++..|++|..|
T Consensus 237 ~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~g 312 (652)
T 1pg4_A 237 WRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTG 312 (652)
T ss_dssp HHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHH
T ss_pred HHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH---hcCCCCCCEEEEccCCeeeec
Confidence 666644322 2223345678999999999999999999999999987665432221 345789999999999999999
Q ss_pred hHHHHHHHHHhCcEEEEccC----cCHHHHHHHHHhccceeccCcHHHHHHHHhcCC--CCCCCCCCceEEEEecccCCH
Q 009077 242 LNSVLLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD--VDKYDMSSIRTVMSGAAPMGK 315 (544)
Q Consensus 242 ~~~~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~l~~~~~~G~~l~~ 315 (544)
+...++.++..|+++++.+. .++..+++.++++++|++.++|++++.|++... .....++++|.++++||++++
T Consensus 313 ~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 392 (652)
T 1pg4_A 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP 392 (652)
T ss_dssp HHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCH
T ss_pred hHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCH
Confidence 87778899999999999875 588999999999999999999999999988754 234467899999999999999
Q ss_pred HHHHHHHHHCC--CCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEec
Q 009077 316 ELEDAVRAKLP--HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393 (544)
Q Consensus 316 ~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~ 393 (544)
++++++.+.++ ++++++.||+||++..++... ........+++|+|+++++++|+| +++++++.|+.|||+++|
T Consensus 393 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~---~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g 468 (652)
T 1pg4_A 393 EAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL---PGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD 468 (652)
T ss_dssp HHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC---TTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred HHHHHHHHHhCCCCCcEEccccCcccccceecCC---CCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence 99999999983 289999999999986554321 111234568999999999999999 478999999999999999
Q ss_pred --CcccccccCChhhhhhhcC--CCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEE
Q 009077 394 --AQIMKGYLNDREATETTID--KEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVV 469 (544)
Q Consensus 394 --~~~~~gy~~~~~~~~~~~~--~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~ 469 (544)
|++++||+++++.+...+. .+|||+|||+|++++||++++.||+||+||++|++|++.+||++|.++|.|.+++|+
T Consensus 469 ~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 548 (652)
T 1pg4_A 469 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548 (652)
T ss_dssp CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEE
T ss_pred CCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 7899999999988876652 478999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceEEEEEEecCCCCCC---HHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhc
Q 009077 470 PMKDEAAGEVPVAFVVRSNGSKIT---EDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAG 540 (544)
Q Consensus 470 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 540 (544)
+++++..++.++++|++.++...+ .++|+++++++|+.|++|+.|+++++||+|++||++|++|++++.+.
T Consensus 549 g~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 999988899999999998776554 47899999999999999999999999999999999999999999875
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5.7e-77 Score=619.70 Aligned_cols=512 Identities=22% Similarity=0.340 Sum_probs=434.7
Q ss_pred EecCCCCCCCCCCCC-HHHHHHhhhcc-----CCCccEEEeCC---CCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEE
Q 009077 12 FRSKLPDIYIPNHLP-LHTYCFENISQ-----FADRPCIINGP---TGDVYTYADVELTSRKVAAGLSKL-GVQKGDVIM 81 (544)
Q Consensus 12 ~~~~~~~~~~~~~~~-~~~~l~~~a~~-----~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~ 81 (544)
++.++.....|...+ +.+.+.+++++ +|+++|+++.+ .++++||+||.++++++|++|.+. |+++||+|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~ 103 (570)
T 3c5e_A 24 MSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVA 103 (570)
T ss_dssp ---CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEE
T ss_pred cccccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEE
Confidence 344455555565555 46888888888 99999998742 137899999999999999999998 999999999
Q ss_pred EEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhc-Cc-EEEEeCC-CCCC
Q 009077 82 LLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH-GA-RIVTIDP-PPEN 158 (544)
Q Consensus 82 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~v~~~~-~~~~ 158 (544)
++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+++.....+..+.... .. .++.++. ....
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDG 183 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTT
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccc
Confidence 9999999999999999999999999999999999999999999999999998877766654433 22 3445543 2233
Q ss_pred CccHHHHHhhccCCCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHH--HHHHhhhcCCCCccCCCCeEEEEecch
Q 009077 159 CLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVT--SVAQQVDGENPNLYLHKEDVILCVLPL 236 (544)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ 236 (544)
...+++++..... ..+.....++++++++|||||||.||+|.++|+ +.. ..... . .+++.++|++++..|+
T Consensus 184 ~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~----~~~~~~~d~~~~~~p~ 256 (570)
T 3c5e_A 184 WLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-G----WTGLQASDIMWTISDT 256 (570)
T ss_dssp SEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-T----TTSCCTTCEEEECCCT
T ss_pred cccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-h----hcCCCCCceEEEcCch
Confidence 4456666443322 222344678999999999999999999999999 443 22222 2 4568899999999999
Q ss_pred hhHHhhHHHHHHHHHhCcEEEEcc--CcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCC
Q 009077 237 FHIYSLNSVLLCALRVGAAILIMQ--KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMG 314 (544)
Q Consensus 237 ~~~~g~~~~~~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~ 314 (544)
+|..+++..++.++..|+++++.+ .+++..+++.++++++|++.++|+++..|.+.. .....++++|.+++||++++
T Consensus 257 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~ 335 (570)
T 3c5e_A 257 GWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLL 335 (570)
T ss_dssp TSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCC
Confidence 999998767889999999999876 689999999999999999999999999998863 33445789999999999999
Q ss_pred HHHHHHHHHHCCCCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEe--
Q 009077 315 KELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR-- 392 (544)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~-- 392 (544)
+++.+.+.+.+ ++++++.||+||++.+++.. .......+++|+|+++++++|+| +++++++.|+.|||+++
T Consensus 336 ~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~ 408 (570)
T 3c5e_A 336 PETLENWRAQT-GLDIRESYGQTETGLTCMVS-----KTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVK 408 (570)
T ss_dssp HHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-----TTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECS
T ss_pred HHHHHHHHHHh-CCchhhccchhhcccceecC-----cccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEecc
Confidence 99999999988 89999999999998654432 12234567899999999999999 46899999999999999
Q ss_pred ---cCcccccccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEE
Q 009077 393 ---GAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVV 469 (544)
Q Consensus 393 ---~~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~ 469 (544)
|++++.||+++++.+...| .++||+|||+|++++||++++.||+||+||.+|++|+|.+||+.|.++|+|.+++|+
T Consensus 409 ~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv 487 (570)
T 3c5e_A 409 PIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVI 487 (570)
T ss_dssp SBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 9999999999999999888 589999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceEEEEEEecCCC--CC---CHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 470 PMKDEAAGEVPVAFVVRSNGS--KI---TEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 470 ~~~~~~~~~~~~~~v~~~~~~--~~---~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
+.+++..++.++++|++.++. .. ..++|++++++.|+.|++|..++++++||+|++||++|++|++.+.+
T Consensus 488 ~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 488 SSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred eeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 999988889999999987543 11 24689999999999999999999999999999999999999998854
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.5e-78 Score=629.11 Aligned_cols=508 Identities=27% Similarity=0.429 Sum_probs=394.7
Q ss_pred CCCCCCHHHHHHhhhccCCCccEEEeCC--CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHH
Q 009077 21 IPNHLPLHTYCFENISQFADRPCIINGP--TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGAS 98 (544)
Q Consensus 21 ~~~~~~~~~~l~~~a~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 98 (544)
...++|+.+.|.++++++|+++|+++.+ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+
T Consensus 14 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 93 (541)
T 1v25_A 14 MDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVP 93 (541)
T ss_dssp CCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 3345799999999999999999998532 25789999999999999999999999999999999999999999999999
Q ss_pred hhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhc-Cc-EEEEeCCCCC-CCccHHHHHhhccCCCCC
Q 009077 99 YIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH-GA-RIVTIDPPPE-NCLHFSELITQADENEIP 175 (544)
Q Consensus 99 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (544)
++|++++|++|.++.+++.++++.++++++|+++...+.+....... .. .++.++.... ....+++++.....
T Consensus 94 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 169 (541)
T 1v25_A 94 GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD---- 169 (541)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCC----
T ss_pred hcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCC----
Confidence 99999999999999999999999999999999998877766654433 22 3444443221 23455555322211
Q ss_pred ccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcE
Q 009077 176 AVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAA 255 (544)
Q Consensus 176 ~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~ 255 (544)
.....++++++++|||||||.||+|.++|+++........ ....+++.++|++++.+|++|..++ ..++.++..|++
T Consensus 170 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~ 246 (541)
T 1v25_A 170 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS--LVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAK 246 (541)
T ss_dssp CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT--STTTTCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCE
T ss_pred cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh--hcccccCCCCCEEEEeccchhhhHH-HHHHHHHhcCce
Confidence 1345678999999999999999999999999987665421 1124567899999999999999988 457788999999
Q ss_pred EEEccC-cCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccc
Q 009077 256 ILIMQK-FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (544)
Q Consensus 256 ~v~~~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~y 334 (544)
+++.+. +++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+++ +.+ ++++++.|
T Consensus 247 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~Y 324 (541)
T 1v25_A 247 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGY 324 (541)
T ss_dssp EEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEE
T ss_pred EEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecc
Confidence 999864 699999999999999999999999999987655445567899999999999999999999 667 89999999
Q ss_pred cccccCccccccccccCC---C---CccCCCeeeeccCCceEEEEcCCCCCCCCC--CCceeEEEecCcccccccCChhh
Q 009077 335 GMTEAGPVLSMCLAFAKE---P---FEIKSGACGTVVRNAEMKIVDPDTGISLPR--NQAGEICIRGAQIMKGYLNDREA 406 (544)
Q Consensus 335 G~tE~~~~~~~~~~~~~~---~---~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~ 406 (544)
|+||++.+++.+...... . ......++|+|+++++++|+| +++++++. ++.|||+++|++++.||+++++.
T Consensus 325 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~ 403 (541)
T 1v25_A 325 GLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 403 (541)
T ss_dssp ECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHH
T ss_pred cccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhh
Confidence 999998766543211000 0 012347889999999999999 46788874 36899999999999999999999
Q ss_pred hhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEe
Q 009077 407 TETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486 (544)
Q Consensus 407 ~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 486 (544)
+...|..+|||+|||+|+++++|++++.||+||+||.+|++|+|.+||+.|.++|+|.+++|++++++..++.++++|++
T Consensus 404 t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~ 483 (541)
T 1v25_A 404 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP 483 (541)
T ss_dssp HHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--
T ss_pred hhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEE
Confidence 99999889999999999999999999999999999999999999999999999999999999999999889999999987
Q ss_pred cCCCCCCHHHHHHHHHh-cccCCCcccEEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 487 SNGSKITEDEIKQYISK-QVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 487 ~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
. +...+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 484 ~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 484 R-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ------------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred C-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 6 455667889999999 899999999999999999999999999999998865
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-77 Score=618.87 Aligned_cols=495 Identities=23% Similarity=0.311 Sum_probs=425.1
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeE
Q 009077 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104 (544)
Q Consensus 25 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (544)
||+.+.|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhc-cCCCCCccCCCCCC
Q 009077 105 TTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQA-DENEIPAVKINPDD 183 (544)
Q Consensus 105 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (544)
+|++|.++.+++.++++.+++++++++...... .....++.. ..+.++.... .....+.....+++
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d 145 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLPVRIVSE-------DNLKDIFFTHKGNTPNPEHAVKGDE 145 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCSSEEEET-------HHHHHHHHHTTTCCCCGGGSCCTTS
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccccceech-------hhhhhhcccccccCCCccccCCCCC
Confidence 999999999999999999999999997543110 001111111 1122222111 11222334567899
Q ss_pred EEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEccC--
Q 009077 184 VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-- 261 (544)
Q Consensus 184 ~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~-- 261 (544)
+++++|||||||.||+|.++|+++.+....... .+++.++|++++.+|++|..++ ..++.++..|+++++.+.
T Consensus 146 ~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 220 (512)
T 3fce_A 146 NFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE----DFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDM 220 (512)
T ss_dssp EEEEEEECC----CEEEEEEHHHHHHHHHHHHH----HTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHH
T ss_pred eEEEEECCCCCCCCceEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHH
Confidence 999999999999999999999999988877765 3458899999999999999998 568899999999999876
Q ss_pred -cCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccccC
Q 009077 262 -FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340 (544)
Q Consensus 262 -~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE~~ 340 (544)
.++..+++.++++++|++.++|+++..++.........++++|.++++|+++++++.+++.+.|+++++++.||+||++
T Consensus 221 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 300 (512)
T 3fce_A 221 IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEAT 300 (512)
T ss_dssp HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhh
Confidence 6899999999999999999999999999988777777789999999999999999999999999999999999999998
Q ss_pred ccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhc---CCCCce
Q 009077 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI---DKEGWL 417 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~ 417 (544)
.+++...............++|.|.++++++++| +++.+++.|+.|||+++|++++.||+++++.+...| ++++||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 379 (512)
T 3fce_A 301 VAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY 379 (512)
T ss_dssp SCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEE
Confidence 7665432211111223557899999999999999 678999999999999999999999999999998887 467899
Q ss_pred ecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCH---
Q 009077 418 HTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE--- 494 (544)
Q Consensus 418 ~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~--- 494 (544)
+|||+|++ +||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++++++..++.+++++++.++...+.
T Consensus 380 ~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 458 (512)
T 3fce_A 380 KTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKL 458 (512)
T ss_dssp EEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHH
T ss_pred eCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhh
Confidence 99999999 89999999999999999999999999999999999999999999998888899999999876554443
Q ss_pred -HHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhcc
Q 009077 495 -DEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGD 541 (544)
Q Consensus 495 -~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 541 (544)
++++++++++|+.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 459 ~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 459 TSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp HHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred HHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 57999999999999999999999999999999999999999987653
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-78 Score=626.61 Aligned_cols=497 Identities=27% Similarity=0.414 Sum_probs=331.2
Q ss_pred CCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC
Q 009077 23 NHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA 102 (544)
Q Consensus 23 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 102 (544)
.++|+.+.|.++++++||++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 3489999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhc-C-cEEEEeCCCCCCCccHHHHHhhccCCCCCccCCC
Q 009077 103 TSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH-G-ARIVTIDPPPENCLHFSELITQADENEIPAVKIN 180 (544)
Q Consensus 103 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (544)
+++|++|.++.+++.++++.++++++|++......+....... . ..++.++... ..+.++.........+.....
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 158 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS---GPFAPFKDLASDTPFSAPEFG 158 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC---SSCEEGGGTCCCSCCCCCCCC
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC---cChhhHhhccCCCCCCcCCCC
Confidence 9999999999999999999999999999998877655444333 2 3344444322 223232221222223344577
Q ss_pred CCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEcc
Q 009077 181 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ 260 (544)
Q Consensus 181 ~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 260 (544)
++++++++|||||||.||+|.++|+++......... .+++.++|++++.+|++|.+++...+...+..|+.++ ..
T Consensus 159 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~-~~ 233 (509)
T 3ivr_A 159 AADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD----AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI-AA 233 (509)
T ss_dssp TTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE-CS
T ss_pred ccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE-ec
Confidence 899999999999999999999999999988887766 3458899999999999999998554554555555554 44
Q ss_pred CcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccccC
Q 009077 261 KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340 (544)
Q Consensus 261 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE~~ 340 (544)
.+++..+++.++++++|++.++|+++..+++.. ....++++|.++.+|++ +..+.+.+.++++++++.||+||++
T Consensus 234 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~ 308 (509)
T 3ivr_A 234 KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETS 308 (509)
T ss_dssp SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGT
T ss_pred ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccc
Confidence 889999999999999999999999999999886 34457899999999987 8899999999999999999999999
Q ss_pred ccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCceecC
Q 009077 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTG 420 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~Tg 420 (544)
.+++.+.. ......+|+|+++++++|+|+ ++++++.|+.|||+++|++++.||+++++.+...| .+|||+||
T Consensus 309 ~~~~~~~~------~~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TG 380 (509)
T 3ivr_A 309 GLSTFAPY------RDRPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTG 380 (509)
T ss_dssp EEEEEEEG------GGSTTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEE
T ss_pred cccccCcc------ccCCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccc
Confidence 77665422 122344899999999999994 68999999999999999999999999999999998 58999999
Q ss_pred ceEEEcCCCcEEEEccc--cceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCHHHHH
Q 009077 421 DIGYIDDDDELFIVDRL--KELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIK 498 (544)
Q Consensus 421 Dl~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 498 (544)
|+|+++++|++++.||. +|+||.+|++|+|.+||++|.++|+|.+++|++++++..++.+++++++.++...+.++++
T Consensus 381 Dl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~ 460 (509)
T 3ivr_A 381 DMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALA 460 (509)
T ss_dssp EEEEECTTSCEEEEEEC---------------------------------------------------------------
T ss_pred cEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999998889999999998888778889999
Q ss_pred HHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhccc
Q 009077 499 QYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGDL 542 (544)
Q Consensus 499 ~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~~ 542 (544)
++++++|+.|++|+.++++++||+|++||++|++|++++.+...
T Consensus 461 ~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 461 EFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp --------------------------------------------
T ss_pred HHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999987653
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.9e-77 Score=615.86 Aligned_cols=494 Identities=22% Similarity=0.281 Sum_probs=429.3
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHhhCCe
Q 009077 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKL-GVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103 (544)
Q Consensus 25 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 103 (544)
||+.+.|.++++++|+++|+++. ++++||+||+++++++|++|.+. |.++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 58999999999999999999987 79999999999999999999985 8889999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhccCCCCCccCCCCCC
Q 009077 104 STTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDD 183 (544)
Q Consensus 104 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (544)
++|++|.++.+++.++++.++++++|++...... ... .......++++...............+++
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG--------QQIQTVSAEELLENEGGSVSQDQWVKEHE 144 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC--------CSSCEEEHHHHHTSCSCCCCGGGSCCTTS
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc--------cccceecHhhhhccccCCccccccCCCCC
Confidence 9999999999999999999999999996543210 000 01112344444333222222334567899
Q ss_pred EEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEccC--
Q 009077 184 VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-- 261 (544)
Q Consensus 184 ~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~-- 261 (544)
+++++|||||||.||+|.++|+++.....+... .+++.+++++++.+|++|..++ ..++.++..|+++++.+.
T Consensus 145 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 219 (511)
T 3e7w_A 145 TFYIIYTSGSTGNPKGVQISAANLQSFTDWICA----DFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDA 219 (511)
T ss_dssp EEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH----HSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHH
T ss_pred eEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH----hcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhh
Confidence 999999999999999999999999988877765 3458899999999999999987 668899999999999876
Q ss_pred -cCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccccC
Q 009077 262 -FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340 (544)
Q Consensus 262 -~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE~~ 340 (544)
.++..+++.++++++|++.++|+++..+++........++++|.++++|+++++++.+.+.+.|+++++++.||+||++
T Consensus 220 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 299 (511)
T 3e7w_A 220 VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299 (511)
T ss_dssp HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGS
T ss_pred hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchhe
Confidence 6899999999999999999999999999988776677789999999999999999999999999999999999999998
Q ss_pred ccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcC---CCCce
Q 009077 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID---KEGWL 417 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~~~~ 417 (544)
.+++.+.............++|.|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+...|. +..||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~ 378 (511)
T 3e7w_A 300 VAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY 378 (511)
T ss_dssp SCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEE
T ss_pred eeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEE
Confidence 7666442221112233456799999999999999 4689999999999999999999999999999988872 23379
Q ss_pred ecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCH---
Q 009077 418 HTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE--- 494 (544)
Q Consensus 418 ~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~--- 494 (544)
+|||+|++ +||++++.||+||+||++|++|+|.+||+.|.++|.|.+++|++++++..++.+++++++.++.....
T Consensus 379 ~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 457 (511)
T 3e7w_A 379 RTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQL 457 (511)
T ss_dssp EEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHH
T ss_pred eCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhH
Confidence 99999999 69999999999999999999999999999999999999999999998888899999999887655443
Q ss_pred -HHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhcc
Q 009077 495 -DEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGD 541 (544)
Q Consensus 495 -~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 541 (544)
++++++++++|+.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 458 ~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 458 TSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 67999999999999999999999999999999999999999988754
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.8e-76 Score=610.50 Aligned_cols=499 Identities=26% Similarity=0.382 Sum_probs=415.3
Q ss_pred CCCCCC-HHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHh
Q 009077 21 IPNHLP-LHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASY 99 (544)
Q Consensus 21 ~~~~~~-~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 99 (544)
.|..++ +.+++.++++ +|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 95 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALY 95 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 344455 8888888899 9999999987 68999999999999999999999999999999999999999999999999
Q ss_pred hCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhc---CcEEEEeCCCCC---CCccHHHHHhhccCCC
Q 009077 100 IGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH---GARIVTIDPPPE---NCLHFSELITQADENE 173 (544)
Q Consensus 100 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~v~~~~~~~---~~~~~~~~~~~~~~~~ 173 (544)
+|++++|+++.++.+++.++++.++++++|+++.....+....... ...++.++.... ....++++.... ...
T Consensus 96 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 174 (529)
T 2v7b_A 96 AGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAA-APA 174 (529)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTS-CCC
T ss_pred cCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccC-CCc
Confidence 9999999999999999999999999999999988776665543321 134444443211 123566664322 222
Q ss_pred CCccCCCCCCEEEEecCCCCCCCCchhhhchHHH-HHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHh
Q 009077 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRV 252 (544)
Q Consensus 174 ~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 252 (544)
.+.....++++++++|||||||.||+|.++|+++ ........ ..+++.++|++++.+|++|.+++...++.++..
T Consensus 175 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~----~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 250 (529)
T 2v7b_A 175 AKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAK----PILGIAENDVVFSAAKLFFAYGLGNGLTFPLSV 250 (529)
T ss_dssp SSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCC----CCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHH
T ss_pred ccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhh----hccCCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Confidence 2334567899999999999999999999999998 44443322 245688999999999999999987778889999
Q ss_pred CcEEEEc-cCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCcee
Q 009077 253 GAAILIM-QKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG 331 (544)
Q Consensus 253 g~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~ 331 (544)
|+++++. +.+++..+++.+.++++|++.++|+++..+++..........++|.+++||+++++++.+.+++.| +++++
T Consensus 251 G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~ 329 (529)
T 2v7b_A 251 GATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEIL 329 (529)
T ss_dssp TCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEE
T ss_pred CcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee
Confidence 9999987 568999999999999999999999999999887654333124899999999999999999999998 89999
Q ss_pred ccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhc
Q 009077 332 QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411 (544)
Q Consensus 332 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 411 (544)
+.||+||++.++... .......+++|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+...|
T Consensus 330 ~~YG~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f 403 (529)
T 2v7b_A 330 DGIGSTEMLHIFLSN-----RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF 403 (529)
T ss_dssp EEEECTTTSSEEEEC-----CTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE
T ss_pred eeEchhhcCceeecc-----ccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh
Confidence 999999997655432 11224567899999999999999 578999999999999999999999999999999888
Q ss_pred CCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCC
Q 009077 412 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSK 491 (544)
Q Consensus 412 ~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 491 (544)
.++||+|||+|+++++|++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++. ++..++.+++++++.++..
T Consensus 404 -~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~ 481 (529)
T 2v7b_A 404 -LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFA 481 (529)
T ss_dssp -ETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCC
T ss_pred -hcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCC
Confidence 58999999999999999999999999999999999999999999999999999999998 6667788899999876543
Q ss_pred C---CHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhH
Q 009077 492 I---TEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTK 536 (544)
Q Consensus 492 ~---~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~ 536 (544)
. ..++++++++++|+.|++|..++++++||+|++||++|++|+++
T Consensus 482 ~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 482 PSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp CCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred cchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 2 24689999999999999999999999999999999999999863
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=6.7e-77 Score=626.00 Aligned_cols=503 Identities=23% Similarity=0.367 Sum_probs=432.7
Q ss_pred CCCCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHH
Q 009077 19 IYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGAS 98 (544)
Q Consensus 19 ~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 98 (544)
...+.++|+.++|.++++ ||++|+++. ++++||+||.++++++|++|.++|+++|++|+++++|++++++++|||+
T Consensus 21 ~~~~~~~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l 96 (617)
T 3rg2_A 21 KGYWQDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALL 96 (617)
T ss_dssp TTSCCCCCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCCCcCCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 345667899999999998 999999987 8999999999999999999999999999999999999999999999999
Q ss_pred hhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchh-----HHHHHHHhhc-CcEEEEeCCCCCCCccHHHHHhhccCC
Q 009077 99 YIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN-----DKVRDLSEHH-GARIVTIDPPPENCLHFSELITQADEN 172 (544)
Q Consensus 99 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (544)
++|+++||++|.++.+++.++++.+++++++++.... .......... ....+.+... .....+.+... ....
T Consensus 97 ~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ 174 (617)
T 3rg2_A 97 KLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND-SGEHNLQDAIN-HPAE 174 (617)
T ss_dssp HHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC-CSTTBHHHHHH-SCCS
T ss_pred hcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc-ccccchhhhhc-cccc
Confidence 9999999999999999999999999999999987653 3333332222 3333332211 11223444422 2222
Q ss_pred CCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHH-HHHHHHH
Q 009077 173 EIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALR 251 (544)
Q Consensus 173 ~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~ 251 (544)
........++++++++|||||||.||+|.++|+++.+.+..... .+++.+++++++.+|++|.+++.. .++.++.
T Consensus 175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~ 250 (617)
T 3rg2_A 175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFL 250 (617)
T ss_dssp SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH----hcCCCCcceEEEeccchhhhhhhHHHHHHHHH
Confidence 23334567899999999999999999999999999988877765 345889999999999999988754 5889999
Q ss_pred hCcEEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCC--CCCCCCceEEEEecccCCHHHHHHHHHHCCCCc
Q 009077 252 VGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVD--KYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK 329 (544)
Q Consensus 252 ~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~--~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~ 329 (544)
.|+++++.+..++..+++.++++++|++.++|+++..+++..... ...++++|.+++|||++++++.+++.+.+ +++
T Consensus 251 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~ 329 (617)
T 3rg2_A 251 AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQ 329 (617)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCc
Confidence 999999999899999999999999999999999999988754322 23678999999999999999999999999 899
Q ss_pred eeccccccccCccccccccccCCCCccCCCeeeecc-CCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhh
Q 009077 330 LGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVV-RNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATE 408 (544)
Q Consensus 330 v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 408 (544)
+++.||+||++..++.+ .........+.|.|+ ++++++++| +++++++.|+.|||+++|+++++||+++++.+.
T Consensus 330 ~~~~YG~tE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~ 404 (617)
T 3rg2_A 330 LQQVFGMAEGLVNYTRL----DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNA 404 (617)
T ss_dssp EEEEEEETTEEEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHH
T ss_pred EEEEeccCcceeecccC----CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhh
Confidence 99999999987544322 111122335679997 788999999 578999999999999999999999999999999
Q ss_pred hhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecC
Q 009077 409 TTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSN 488 (544)
Q Consensus 409 ~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 488 (544)
..|..++||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+
T Consensus 405 ~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 484 (617)
T 3rg2_A 405 SAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE 484 (617)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred hccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999998865
Q ss_pred CCCCCHHHHHHHHHh-cccCCCcccEEEEecCCCCCCCcccchHHHHhHHhh
Q 009077 489 GSKITEDEIKQYISK-QVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAA 539 (544)
Q Consensus 489 ~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~ 539 (544)
..+.+++++++++ .|+.|++|..++++++||+|++||++|++|++.+.+
T Consensus 485 --~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 485 --PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp --CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 5778899999998 699999999999999999999999999999998764
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.1e-76 Score=626.89 Aligned_cols=510 Identities=23% Similarity=0.342 Sum_probs=427.1
Q ss_pred CCHHHHHHhhhccCCCccEEEeCC----CCceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCccHHHHHHHHHh
Q 009077 25 LPLHTYCFENISQFADRPCIINGP----TGDVYTYADVELTSRKVAAGLS-KLGVQKGDVIMLLLQNCPQFVFAFLGASY 99 (544)
Q Consensus 25 ~~~~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 99 (544)
.++.+.|+++++++|+++|+++.. .++++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 356788889999999999999732 3578999999999999999999 99999999999999999999999999999
Q ss_pred hCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchh---------HHHHHHHhhc-C-cEEEEeCCCC--------CCCc
Q 009077 100 IGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN---------DKVRDLSEHH-G-ARIVTIDPPP--------ENCL 160 (544)
Q Consensus 100 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~-~-~~~v~~~~~~--------~~~~ 160 (544)
+|++++|++|.++.+++.++++.++++++|+++... ..+.+..... . .++++++... ....
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence 999999999999999999999999999999987642 2333333221 2 2455554321 1123
Q ss_pred cHHHHHhhccCCCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHH
Q 009077 161 HFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIY 240 (544)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (544)
.|.++.... ....+.....++++++++|||||||.||+|.++|.++.......... .+++.++|++++..|++|..
T Consensus 242 ~~~~~~~~~-~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~ 317 (663)
T 1ry2_A 242 DWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY---TFDTHQEDVFFTAGDIGWIT 317 (663)
T ss_dssp EHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH---HSCCCSSCEEEECSCTTSHH
T ss_pred cHHHHHhhc-CCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH---hcCCCCCcEEEEcCCcHHhh
Confidence 466664332 22233445678999999999999999999999999987665433221 34578999999999999999
Q ss_pred hhHHHHHHHHHhCcEEEEccC----cCHHHHHHHHHhccceeccCcHHHHHHHHhcCC--CCCCCCCCceEEEEecccCC
Q 009077 241 SLNSVLLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD--VDKYDMSSIRTVMSGAAPMG 314 (544)
Q Consensus 241 g~~~~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~l~~~~~~G~~l~ 314 (544)
|..+.++.++..|+++++.+. .++..+++.++++++|++.++|++++.|.+... .....++++|.++++||+++
T Consensus 318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 397 (663)
T 1ry2_A 318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA 397 (663)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCC
Confidence 987778899999999999764 588999999999999999999999999988764 23456889999999999999
Q ss_pred HHHHHHHHHHCC--CCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCC-CCceeEEE
Q 009077 315 KELEDAVRAKLP--HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPR-NQAGEICI 391 (544)
Q Consensus 315 ~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~-g~~Gel~v 391 (544)
+++++++.+.++ ++++++.||+||++..++..... .......+++|.|+++++++|+|++++++++. |+.|||++
T Consensus 398 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i 475 (663)
T 1ry2_A 398 AEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAV 475 (663)
T ss_dssp HHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC--CCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEE
Confidence 999999999883 38999999999998655543110 11234568999999999999999657888988 89999999
Q ss_pred ec--CcccccccCChhhhhhhcC--CCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeE
Q 009077 392 RG--AQIMKGYLNDREATETTID--KEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAA 467 (544)
Q Consensus 392 ~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~ 467 (544)
+| |++++||+++++.+...+. .+|||+|||+|++++||++++.||+||+||++|++|++.+||++|.++|.|.+++
T Consensus 476 ~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~ 555 (663)
T 1ry2_A 476 KAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 555 (663)
T ss_dssp SSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEE
T ss_pred ecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEE
Confidence 99 5899999999988877663 3789999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCceEEEEEEecCCCC---C-C------HHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHH
Q 009077 468 VVPMKDEAAGEVPVAFVVRSNGSK---I-T------EDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKL 537 (544)
Q Consensus 468 v~~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~ 537 (544)
|++.+++..++.++++|++.++.. . + .++|+++++++|+.|++|+.|+++++||+|++||++|++|++++
T Consensus 556 Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 635 (663)
T 1ry2_A 556 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKIL 635 (663)
T ss_dssp EECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSC
T ss_pred EEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHH
Confidence 999999888899999999876643 2 2 57899999999999999999999999999999999999999988
Q ss_pred hhc
Q 009077 538 AAG 540 (544)
Q Consensus 538 ~~~ 540 (544)
.+.
T Consensus 636 ~~~ 638 (663)
T 1ry2_A 636 AGE 638 (663)
T ss_dssp C--
T ss_pred cCC
Confidence 765
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.2e-76 Score=613.31 Aligned_cols=496 Identities=22% Similarity=0.304 Sum_probs=416.3
Q ss_pred CCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCe
Q 009077 24 HLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103 (544)
Q Consensus 24 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 103 (544)
..|+.+.|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 80 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHA 80 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 368999999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHh--hccCCCCCccCCCC
Q 009077 104 STTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELIT--QADENEIPAVKINP 181 (544)
Q Consensus 104 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 181 (544)
++|++|.++.+++.++++.++++++|+++.....+. ....+ .+.++.. .............+
T Consensus 81 ~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 144 (521)
T 3l8c_A 81 YIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE------GISLV----------SLSEIESAKLAEMPYERTHSVKG 144 (521)
T ss_dssp EEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT------TSEEE----------EHHHHHHHHHHTCCCCCSSCCCT
T ss_pred EEecCccccHHHHHHHHHhCCCCEEEecCccccccc------cCccc----------chhhhhhcccccCCcccCCCCCC
Confidence 999999999999999999999999999876432111 11111 2222211 11122223345678
Q ss_pred CCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEccC
Q 009077 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK 261 (544)
Q Consensus 182 ~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~ 261 (544)
+++++++|||||||.||+|.++|+++.+...+..... .+++.+++++++..|++|..++ ..++.++..|+++++.+.
T Consensus 145 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA--AFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPK 221 (521)
T ss_dssp TSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT--TTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCG
T ss_pred CCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc--ccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCH
Confidence 9999999999999999999999999988777665421 2457889999999999998887 668889999999999876
Q ss_pred c---CHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccc
Q 009077 262 F---DIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338 (544)
Q Consensus 262 ~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE 338 (544)
. ++..+++.+.++++|++.++|+++..+..........++++|.++++|+++++++.+.+.+.|+++++++.||+||
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 301 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTE 301 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccH
Confidence 4 8999999999999999999999999998887766677899999999999999999999999999999999999999
Q ss_pred cCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhc---CCCC
Q 009077 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI---DKEG 415 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~ 415 (544)
++.+++.+.............++|+|+++++++|+| +++.+++.|+.|||+++|++++.||+++++.+...| +.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~ 380 (521)
T 3l8c_A 302 ATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQP 380 (521)
T ss_dssp GSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEE
T ss_pred HhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCce
Confidence 987665442221111233457899999999999999 578999999999999999999999999999998887 5678
Q ss_pred ceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCC-CCceEEEEEEecCCCCCC-
Q 009077 416 WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEA-AGEVPVAFVVRSNGSKIT- 493 (544)
Q Consensus 416 ~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~- 493 (544)
||+|||+|+++++|++++.||+||+||++|++|+|.+||+.|.++|.|.+++|++..++. .++.++++|++.++....
T Consensus 381 ~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~ 460 (521)
T 3l8c_A 381 AYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF 460 (521)
T ss_dssp EEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGC
T ss_pred eeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccc
Confidence 999999999999999999999999999999999999999999999999999999887554 457889999988764321
Q ss_pred ------HHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhcc
Q 009077 494 ------EDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGD 541 (544)
Q Consensus 494 ------~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 541 (544)
.++++++++++|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 461 ~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 461 DRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp SSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred ccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 568999999999999999999999999999999999999999987654
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.7e-76 Score=611.92 Aligned_cols=491 Identities=22% Similarity=0.318 Sum_probs=416.0
Q ss_pred CCCCCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 009077 15 KLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAF 94 (544)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 94 (544)
+......+...|+.++|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus 29 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 29 NNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp TCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 344555666689999999999999999999987 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhccCCCC
Q 009077 95 LGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEI 174 (544)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (544)
|||+++|++++|++|.++.+++.++++.++++++|+++.....+.... ....+..++... + ... ....
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~--~~~~~~~~~~~~-----~----~~~-~~~~ 174 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ--FNGQVEIFEEDT-----I----KIR-EGTN 174 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC--CCSEEEECCCST-----T----TTS-CCSC
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc--ccCceeeecchh-----h----ccc-cCcc
Confidence 999999999999999999999999999999999999987655433221 112333332210 0 000 1111
Q ss_pred CccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCc
Q 009077 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGA 254 (544)
Q Consensus 175 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 254 (544)
......++++++++|||||||.||+|.++|+++.+....... .+++.++|++++..|++|..++ ..++.++..|+
T Consensus 175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~ 249 (563)
T 1amu_A 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIGQFASISFDASV-WEMFMALLTGA 249 (563)
T ss_dssp CCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH----TSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTC
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCC
Confidence 123456789999999999999999999999999887776655 3458899999999999999888 56788999999
Q ss_pred EEEEccC---cCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCcee
Q 009077 255 AILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG 331 (544)
Q Consensus 255 ~~v~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~ 331 (544)
++++.+. .++..+++.++++++|++.++|+++..+... .++++|.+++||+++++++.+.+++ .++++
T Consensus 250 ~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~ 320 (563)
T 1amu_A 250 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE---KVTYI 320 (563)
T ss_dssp EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT---TSEEE
T ss_pred EEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh---CCeEE
Confidence 9999875 6899999999999999999999998776432 3578999999999999999999876 47899
Q ss_pred ccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhc
Q 009077 332 QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411 (544)
Q Consensus 332 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 411 (544)
+.||+||++.+++.+... ........++|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+...|
T Consensus 321 ~~YG~TE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f 397 (563)
T 1amu_A 321 NAYGPTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKF 397 (563)
T ss_dssp EEECCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred EEECcCHHhHhheeeecc--cccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhc
Confidence 999999998765543211 11123457899999999999999 578999999999999999999999999999998887
Q ss_pred C------CCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEE
Q 009077 412 D------KEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485 (544)
Q Consensus 412 ~------~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 485 (544)
. .++||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++
T Consensus 398 ~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv 477 (563)
T 1amu_A 398 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV 477 (563)
T ss_dssp EECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEE
T ss_pred ccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEE
Confidence 3 3469999999999999999999999999999999999999999999999999999999999888899999998
Q ss_pred ecCCCCCCHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHh
Q 009077 486 RSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLA 538 (544)
Q Consensus 486 ~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~ 538 (544)
... ..+.++|+++++++|+.|++|..++++++||+|++||++|++|++...
T Consensus 478 ~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 478 SEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp ESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred eCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 753 467899999999999999999999999999999999999999987653
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.7e-77 Score=621.73 Aligned_cols=487 Identities=22% Similarity=0.331 Sum_probs=326.6
Q ss_pred CCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhh
Q 009077 21 IPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYI 100 (544)
Q Consensus 21 ~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 100 (544)
.+...++.++|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 345679999999999999999999987 789999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhccCCCCCccCCC
Q 009077 101 GATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKIN 180 (544)
Q Consensus 101 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (544)
|++++|++|.++.+++.++++.++++++|++......+. ....+.+.... ..............
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~----------~~~~~~~~~~~~~~ 212 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDEA----------ASDAPAGNLATGVG 212 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC-----------------CCCCCCCCC
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeeccc----------cccccccccCCCCC
Confidence 999999999999999999999999999999876533221 12222221110 00111112234567
Q ss_pred CCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEcc
Q 009077 181 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ 260 (544)
Q Consensus 181 ~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 260 (544)
++++++++|||||||.||+|.++|+++.+.... ...+++.+++++++.+|++|..+. ..++.++..|+++++.+
T Consensus 213 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-----~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~ 286 (570)
T 4gr5_A 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-----QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQS 286 (570)
T ss_dssp TTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-----CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECS
T ss_pred CCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-----hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcC
Confidence 899999999999999999999999998765432 124568899999999999887665 56788999999999976
Q ss_pred --CcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccc
Q 009077 261 --KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338 (544)
Q Consensus 261 --~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE 338 (544)
.+++..+++.++++++|++.++|+++..|++... ..++++|.+++||++++++..+.+.+.++++++++.||+||
T Consensus 287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE 363 (570)
T 4gr5_A 287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE 363 (570)
T ss_dssp SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred CccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhh
Confidence 4689999999999999999999999999987653 34789999999999999999999999998999999999999
Q ss_pred cCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCC-----
Q 009077 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDK----- 413 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~----- 413 (544)
++.+.+...... ........++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+...|..
T Consensus 364 ~~~~~~~~~~~~-~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~ 441 (570)
T 4gr5_A 364 SMGFTTHHAVVA-GDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAG 441 (570)
T ss_dssp GCSCSEEEECCG-GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCC
T ss_pred heeeeeeeeecc-cccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCC
Confidence 987665432211 12233456799999999999999 57899999999999999999999999999999888743
Q ss_pred ---CCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCC-
Q 009077 414 ---EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNG- 489 (544)
Q Consensus 414 ---~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~- 489 (544)
++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.+++++++.++
T Consensus 442 ~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~ 521 (570)
T 4gr5_A 442 PGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERAD 521 (570)
T ss_dssp SSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------------------
T ss_pred CCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCC
Confidence 3799999999999999999999999999999999999999999999999999999999888888899999887643
Q ss_pred CCCCHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhH
Q 009077 490 SKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTK 536 (544)
Q Consensus 490 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~ 536 (544)
...+.++|+++++++|+.|++|..++++++||+|++||++|++|++.
T Consensus 522 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 522 APPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------
T ss_pred CCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 35677899999999999999999999999999999999999999864
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.5e-75 Score=612.87 Aligned_cols=485 Identities=18% Similarity=0.211 Sum_probs=402.8
Q ss_pred CCCCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHH
Q 009077 19 IYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGAS 98 (544)
Q Consensus 19 ~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 98 (544)
...+.+.|+.+.|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++|++|+++++|++++++++|||+
T Consensus 21 ~~~~~~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 21 LDLYAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp TSGGGSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34445689999999999999999999987 7899999999999999999999999999999999999999999999999
Q ss_pred hhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhccCCCCCccC
Q 009077 99 YIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVK 178 (544)
Q Consensus 99 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (544)
++|+++||++|.++.+++.++++.+++++++++........ ....+.+ ... ...........
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~~~~~----------~~~--~~~~~~~~~~~ 160 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLPCVPV----------RHL--PAAPASVARPC 160 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSCEEEG----------GGC--CCCCCCSSCCC
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCceeee----------ccC--CcCCccccCCC
Confidence 99999999999999999999999999999997654321100 1111111 000 00111112234
Q ss_pred CCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEE
Q 009077 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (544)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~ 258 (544)
..++++++++|||||||.||+|.++|+++.+.+.. ...+++.+++++++..|++|..++ ..++.++..|+++++
T Consensus 161 ~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-----~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 234 (620)
T 4dg8_A 161 FAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-----QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVL 234 (620)
T ss_dssp CCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-----CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred CCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-----HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEe
Confidence 56899999999999999999999999999765543 124568899999999999999988 568899999999999
Q ss_pred cc--CcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccc
Q 009077 259 MQ--KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGM 336 (544)
Q Consensus 259 ~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~ 336 (544)
.+ .+++..+++.++++++|++.++|+++..+.+.. ...++++|.+++|||+++++..+++.+.++++++++.||+
T Consensus 235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 311 (620)
T 4dg8_A 235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGP 311 (620)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEch
Confidence 64 579999999999999999999999999998753 2357899999999999999999999888889999999999
Q ss_pred cccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCC--
Q 009077 337 TEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE-- 414 (544)
Q Consensus 337 tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-- 414 (544)
||++.+++.... ..........++|+|+++++++|+|++....++.|+.|||+++|+++++||+++++.+...|..+
T Consensus 312 TE~~~~~~~~~~-~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~ 390 (620)
T 4dg8_A 312 TENTTFTCCHVV-TDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPY 390 (620)
T ss_dssp GGGCSCSEEEEC-CTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEE
T ss_pred hhhhhheEEEec-cccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCC
Confidence 999876654322 22223345678999999999999996444448899999999999999999999999999888443
Q ss_pred -----CceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCC
Q 009077 415 -----GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNG 489 (544)
Q Consensus 415 -----~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 489 (544)
+||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++..+..++++ +...
T Consensus 391 ~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~-~~~~- 468 (620)
T 4dg8_A 391 RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAW-TGKA- 468 (620)
T ss_dssp TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEE-EECT-
T ss_pred CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEE-ecCh-
Confidence 799999999999999999999999999999999999999999999999999999998877544444444 4321
Q ss_pred CCCCHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhc
Q 009077 490 SKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAG 540 (544)
Q Consensus 490 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 540 (544)
+.+.+++.++|+.|++|+.++++++||+|++||++|++|++.+.+.
T Consensus 469 -----~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 469 -----DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp -----TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred -----HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 2344667788999999999999999999999999999999987654
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.1e-76 Score=605.15 Aligned_cols=490 Identities=24% Similarity=0.381 Sum_probs=390.7
Q ss_pred CCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeE
Q 009077 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104 (544)
Q Consensus 25 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (544)
||+.++|.++++++|+++|+++. ++++||+||.++++++|++|.++ +||+|+++++|++++++++|||+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 57888999999999999999987 78999999999999999999986 89999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCC------CCccH----HHHHhhccCCCC
Q 009077 105 TTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPE------NCLHF----SELITQADENEI 174 (544)
Q Consensus 105 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~----~~~~~~~~~~~~ 174 (544)
+|+++.++.+++.++++.++++++|++..................+....... ....+ +...........
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNI 155 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHH
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccc
Confidence 99999999999999999999999999876543221110000000000000000 00000 001000000011
Q ss_pred CccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCc
Q 009077 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGA 254 (544)
Q Consensus 175 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 254 (544)
......++++++++|||||||.||+|.++|+++......... .+++.+++++++.+|++|.+|+ ..++.++..|+
T Consensus 156 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~ 230 (501)
T 3ipl_A 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE----SLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGF 230 (501)
T ss_dssp TCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH----HTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTC
T ss_pred cccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH----hhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCc
Confidence 223467899999999999999999999999999988877665 3458899999999999999998 45888999999
Q ss_pred EEEEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccc
Q 009077 255 AILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (544)
Q Consensus 255 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~y 334 (544)
++++.+.+++..+++.++++++|++.++|+++..|++...... .++|.+++||+++++++.+.+.+ + ++++++.|
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~Y 305 (501)
T 3ipl_A 231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSF 305 (501)
T ss_dssp EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEE
T ss_pred eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccc
Confidence 9999999999999999999999999999999999998765443 28999999999999999999987 5 89999999
Q ss_pred cccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCC
Q 009077 335 GMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414 (544)
Q Consensus 335 G~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 414 (544)
|+||++..+..+. .........++|.|+++++++++|++ .++.|||+++|+.+++||+++++.+.. + .+
T Consensus 306 G~TE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~ 374 (501)
T 3ipl_A 306 GMTETCSQFLTAT---PEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-EN 374 (501)
T ss_dssp EEGGGTEEEEEEC---HHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ET
T ss_pred cccccccceeecC---ccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cC
Confidence 9999986554331 11123456789999999999999964 456799999999999999999988876 5 78
Q ss_pred CceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCH
Q 009077 415 GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE 494 (544)
Q Consensus 415 ~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 494 (544)
|||+|||+|+++++|++++.||.||+||.+|++|+|.+||++|.++|+|.+++|++.+++..++.++++++.. ...+.
T Consensus 375 g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~ 452 (501)
T 3ipl_A 375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISK 452 (501)
T ss_dssp TEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCH
T ss_pred CceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999998899999998864 45788
Q ss_pred HHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhccc
Q 009077 495 DEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGDL 542 (544)
Q Consensus 495 ~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~~ 542 (544)
++++++++++|+.|++|..++++++||+|++||++|++|++.......
T Consensus 453 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~~ 500 (501)
T 3ipl_A 453 AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHHH 500 (501)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEECSSCC---------------------
T ss_pred HHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccccC
Confidence 999999999999999999999999999999999999999998776543
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.5e-75 Score=599.34 Aligned_cols=475 Identities=24% Similarity=0.354 Sum_probs=394.6
Q ss_pred CCCHHHHHHhhhccCCC-ccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC
Q 009077 24 HLPLHTYCFENISQFAD-RPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA 102 (544)
Q Consensus 24 ~~~~~~~l~~~a~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 102 (544)
-+|+.+.|.++++++|+ ++|+++. ++++||+||.++++++|++|. .|++|+++++|++++++++|||+++|+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 36888999999999987 9999987 899999999999999998775 388999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhccCCCCCccCCCCC
Q 009077 103 TSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPD 182 (544)
Q Consensus 103 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (544)
++||++|.++.+++.++++.++++++|++...... .. ......+.++... ....+.....++
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 155 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--PA--LGALERVDVDVRA--------------RGAVPEDGADDG 155 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--GG--GTTSEEEECCTTC--------------CCCCCCCCCCTT
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--hh--hcccccccccccc--------------ccCCCCCCCCCC
Confidence 99999999999999999999999999998652100 00 0122333322110 111223345789
Q ss_pred CEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEccCc
Q 009077 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKF 262 (544)
Q Consensus 183 ~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~ 262 (544)
++++++|||||||.||+|.++|+++...+..... .+++.++|++++.+|++|..|+...++.++..|+++++.+.+
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~ 231 (505)
T 3nyq_A 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALAD----AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRF 231 (505)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSC
T ss_pred CeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHH----HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 9999999999999999999999999988877765 345889999999999999999877889999999999999999
Q ss_pred CHHHHHHHHHhccceeccCcHHHHHHHHhcCCCC---CCCCCCceEEEEecccCCHHHHHHHHHHCCCCceecccccccc
Q 009077 263 DIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVD---KYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339 (544)
Q Consensus 263 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~---~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE~ 339 (544)
++..+++.+ ++++|++.++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||+
T Consensus 232 ~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (505)
T 3nyq_A 232 STEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTET 309 (505)
T ss_dssp CHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTT
T ss_pred ChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhc
Confidence 999999999 889999999999999998754322 23467889999999999999999999988 8999999999999
Q ss_pred CccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCC---CCceeEEEecCcccccccCChhhhhhhcCCCCc
Q 009077 340 GPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPR---NQAGEICIRGAQIMKGYLNDREATETTIDKEGW 416 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 416 (544)
+..++.. .......+++|+|+++++++|+|+ ++.+++. |+.|||+++|++++.||+++++.+...|..++|
T Consensus 310 ~~~~~~~-----~~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 383 (505)
T 3nyq_A 310 LMNTSVR-----ADGEPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGF 383 (505)
T ss_dssp EEEEECC-----TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSC
T ss_pred ccccccC-----CCCCCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCC
Confidence 8655432 223445678999999999999994 6777765 899999999999999999999999999988999
Q ss_pred eecCceEEEcCCCcEEEEccc-cceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecC-CCCCCH
Q 009077 417 LHTGDIGYIDDDDELFIVDRL-KELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSN-GSKITE 494 (544)
Q Consensus 417 ~~TgDl~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~ 494 (544)
|+|||+|++++||++++.||+ ||+||.+|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.+ +...+.
T Consensus 384 y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~ 463 (505)
T 3nyq_A 384 FRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPAL 463 (505)
T ss_dssp EEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCH
T ss_pred CccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCH
Confidence 999999999999999999997 689999999999999999999999999999999999999999999999875 456788
Q ss_pred HHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHh
Q 009077 495 DEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRT 535 (544)
Q Consensus 495 ~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~ 535 (544)
++|+++++++|+.|++|+.++++++||+|++||++|++|++
T Consensus 464 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 464 GTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred HHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999999999999999999999999999999999999986
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.9e-73 Score=597.78 Aligned_cols=505 Identities=23% Similarity=0.322 Sum_probs=416.6
Q ss_pred CCCCCHHHHHHhhhccCCCccEEEeCC--CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHh
Q 009077 22 PNHLPLHTYCFENISQFADRPCIINGP--TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASY 99 (544)
Q Consensus 22 ~~~~~~~~~l~~~a~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 99 (544)
+..+|+.++|.++++++|+++|+++.+ .++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 345899999999999999999998643 248999999999999999999999999999999999999999999999999
Q ss_pred hCCeEeecCCCCC---HHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCc---EEEEeCCCCCCCccHHHHHhhccCCC
Q 009077 100 IGATSTTANPFYT---PPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGA---RIVTIDPPPENCLHFSELITQADENE 173 (544)
Q Consensus 100 ~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 173 (544)
+|++++|++|.++ .+++.++++.+++++++++......+......... .+..+ ..+.+ .......
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~ 158 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI--------ALESI-ELNRSSS 158 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE--------EGGGC-CGGGGGG
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee--------echhc-ccccccc
Confidence 9999999999884 47889999999999999998766554332201000 00111 11111 1111112
Q ss_pred CCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhC
Q 009077 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVG 253 (544)
Q Consensus 174 ~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g 253 (544)
.......++++++++|||||||.||+|.++|+++...+..... .+++.+++++++.+|++|..|++..++.++..|
T Consensus 159 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G 234 (590)
T 3kxw_A 159 WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT----SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGG 234 (590)
T ss_dssp CCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHT
T ss_pred CCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH----hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcC
Confidence 2334567899999999999999999999999999998887766 345889999999999999999966689999999
Q ss_pred cEEEEccCc----CHHHHHHHHHhccceeccCcHHHHHHHHhcCC---CCCCCCCCceEEEEecccCCHHHHHHHHHHCC
Q 009077 254 AAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD---VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLP 326 (544)
Q Consensus 254 ~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~---~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~ 326 (544)
+++++.+.+ ++..+++.++++++|++.++|.++..+.+... .....++++|.+++||+++++++.+.+.+.|+
T Consensus 235 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~ 314 (590)
T 3kxw_A 235 IQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFK 314 (590)
T ss_dssp CEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHG
T ss_pred ceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHH
Confidence 999998765 78999999999999999999999998887633 33456889999999999999999999999873
Q ss_pred -----CCceeccccccccCccccccccccC----------------------CCCccCCCeeeeccCCceEEEEcCCCCC
Q 009077 327 -----HAKLGQGYGMTEAGPVLSMCLAFAK----------------------EPFEIKSGACGTVVRNAEMKIVDPDTGI 379 (544)
Q Consensus 327 -----~~~v~~~yG~tE~~~~~~~~~~~~~----------------------~~~~~~~~~~g~p~~~~~~~i~d~~~~~ 379 (544)
++++++.||+||++.+++....... ........++|+|+++ ++|+|++++.
T Consensus 315 ~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~ 392 (590)
T 3kxw_A 315 EFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLI 392 (590)
T ss_dssp GGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCC
T ss_pred HcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCc
Confidence 4579999999999977664321100 1112234678999998 8889987799
Q ss_pred CCCCCCceeEEEecCcccccccCChhhhhhhcCC------CC--ceecCceEEEcCCCcEEEEccccceEEeCceeeCcH
Q 009077 380 SLPRNQAGEICIRGAQIMKGYLNDREATETTIDK------EG--WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPA 451 (544)
Q Consensus 380 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 451 (544)
+++.|+.|||+|+|++++.||+++++.+...|.. +| ||+|||+|+++ +|++++.||+||+||++|++|+|.
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~ 471 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQ 471 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHH
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHH
Confidence 9999999999999999999999999999988843 24 99999999998 999999999999999999999999
Q ss_pred HHHHHH-HcCCCcc--eeEEEeeeCCCCCceEEEEEEecCCC--CCCHHHHHHHHHhcccC-CCccc-EEEEe--cCCCC
Q 009077 452 ELEAML-IAHPNIS--DAAVVPMKDEAAGEVPVAFVVRSNGS--KITEDEIKQYISKQVVF-YKRIN-RVFFT--DSIPK 522 (544)
Q Consensus 452 ~ie~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~~~~~--~~lP~ 522 (544)
+||+.| ..+|.|. +++|++++++. ++.++++++..++. ..+.+++.++++..++. +++|. .++++ ++||+
T Consensus 472 eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~ 550 (590)
T 3kxw_A 472 DIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPH 550 (590)
T ss_dssp HHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCC
T ss_pred HHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCc
Confidence 999999 7889998 79999988765 67788888877653 34567899999988875 77775 45555 79999
Q ss_pred CCCcccchHHHHhHHhhcccC
Q 009077 523 APSGKILRKDLRTKLAAGDLR 543 (544)
Q Consensus 523 t~~GK~~r~~l~~~~~~~~~~ 543 (544)
|++||++|++|++++.++++.
T Consensus 551 t~sGKi~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 551 TTSGKIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp CSCHHHHHHHHHHHHHHTCSC
T ss_pred CCCcHHHHHHHHHHHHcCCCc
Confidence 999999999999999998874
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=6.7e-72 Score=632.62 Aligned_cols=492 Identities=23% Similarity=0.337 Sum_probs=420.8
Q ss_pred CCCCCCCCCHHHHHHhhhccCCCccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 009077 18 DIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGA 97 (544)
Q Consensus 18 ~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 97 (544)
..+.+. .++.++|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++|++|+|+++|++++++++|||
T Consensus 458 ~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lai 534 (1304)
T 2vsq_A 458 AQAHET-KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGV 534 (1304)
T ss_dssp CCCCCC-CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCCCCC-CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 333443 79999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred HhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhccCCCCCcc
Q 009077 98 SYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAV 177 (544)
Q Consensus 98 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (544)
+++|+++||++|.++.+++.++++.+++++++++......+.... .....+.++... .. ......+..
T Consensus 535 lkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~---~~~~~~~~~ 602 (1304)
T 2vsq_A 535 LKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--YTGTTLFIDDQT-------RF---EEQASDPAT 602 (1304)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--CCSEEEESSCGG-------GG---GSCSSCCCC
T ss_pred HHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--CCCcEEEecccc-------cc---ccccCCCCC
Confidence 999999999999999999999999999999999876543321110 012233332110 00 111122233
Q ss_pred CCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEE
Q 009077 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257 (544)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v 257 (544)
...++++++++|||||||.||||.++|+++.+. ... ...+++.++++++...|+++..+. ..++.++..|++++
T Consensus 603 ~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~----~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 603 AIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKH----VDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLI 676 (1304)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSS----CCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHH----HHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEE
Confidence 567899999999999999999999999999764 222 235678999999999999988776 67889999999999
Q ss_pred EccC---cCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccc
Q 009077 258 IMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (544)
Q Consensus 258 ~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~y 334 (544)
+.+. .++..+.+.+.++++|++.++|+++..+.+... ..++++|.+++|||++++++.+.+.+.+++++++|.|
T Consensus 677 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 753 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCY 753 (1304)
T ss_dssp ECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeE
Confidence 9874 689999999999999999999999999987532 2357899999999999999999999988778999999
Q ss_pred cccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcC--
Q 009077 335 GMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID-- 412 (544)
Q Consensus 335 G~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-- 412 (544)
|+||++.+++..... .........++|+|+++++++|+| +++++++.|+.|||+|+|+++++||+++++.+..+|.
T Consensus 754 G~TE~~~~~~~~~~~-~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~ 831 (1304)
T 2vsq_A 754 GPTEGTVFATAHVVH-DLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIEN 831 (1304)
T ss_dssp CCGGGSSCSEEEECC-CCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEEC
T ss_pred ChhHHhHHheeeecc-CccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccC
Confidence 999999766543221 111233457899999999999999 5789999999999999999999999999999988873
Q ss_pred ----CCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecC
Q 009077 413 ----KEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSN 488 (544)
Q Consensus 413 ----~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 488 (544)
+++||+|||+|++++||.+++.||+||+||++|++|++.+||+.|.++|+|.+++|++.+++..+..++++++...
T Consensus 832 p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~ 911 (1304)
T 2vsq_A 832 PFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT 911 (1304)
T ss_dssp TTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS
T ss_pred CCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC
Confidence 3569999999999999999999999999999999999999999999999999999999888888889999998754
Q ss_pred CCCCCHHHHHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHH
Q 009077 489 GSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKL 537 (544)
Q Consensus 489 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~ 537 (544)
..+.+++++++++.||.|++|..++++++||+|++||++|++|.+..
T Consensus 912 --~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 912 --QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp --SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred --CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 56789999999999999999999999999999999999999987644
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.2e-71 Score=578.36 Aligned_cols=503 Identities=19% Similarity=0.320 Sum_probs=417.7
Q ss_pred CCCCCCCCHHHHHHhhhccCCCccEEEeCC-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 009077 19 IYIPNHLPLHTYCFENISQFADRPCIINGP-TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGA 97 (544)
Q Consensus 19 ~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 97 (544)
...++..|+.++|.++++++|+.+++.... .++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus 15 ~~~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 94 (576)
T 3gqw_A 15 MRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFAC 94 (576)
T ss_dssp CCCSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 344556899999999999999988876432 2478999999999999999999999999999999999999999999999
Q ss_pred HhhCCeEeecCCCCC-------HHHHHHHHHhcCceEEEEecchhHHHHHHHhhcC-cEEEEeCCCCCCCccHHHHHhhc
Q 009077 98 SYIGATSTTANPFYT-------PPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHG-ARIVTIDPPPENCLHFSELITQA 169 (544)
Q Consensus 98 ~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 169 (544)
+++|++++|+++.++ .+++.++++.+++++++++++....+........ ...+. .... ...
T Consensus 95 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~ 163 (576)
T 3gqw_A 95 QYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLS----------HAWF-KAL 163 (576)
T ss_dssp HHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEE----------HHHH-HTS
T ss_pred HHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecc----------hhhh-hcc
Confidence 999999999999998 7899999999999999999988777665543321 22211 1111 111
Q ss_pred cCCCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHH
Q 009077 170 DENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCA 249 (544)
Q Consensus 170 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 249 (544)
...........++++++++|||||||.||+|.++|+++...+...... .+++.++|++++.+|++|.+|++..++.+
T Consensus 164 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 240 (576)
T 3gqw_A 164 PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD---GIKLRPGDRCVSWLPFYHDMGLVGFLLTP 240 (576)
T ss_dssp CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT---TSCCCTTCCEEECCCTTSHHHHHHHTHHH
T ss_pred cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc---ccCCCCcceEEEcCCccccccHHHHHHHH
Confidence 112222334568999999999999999999999999998887766442 24688999999999999999997778889
Q ss_pred HHhCcEEEEccC----cCHHHHHHHHHhccceeccCcHHHHHHHHhcCCC---CCCCCCCceEEEEecccCCHHHHHHHH
Q 009077 250 LRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVR 322 (544)
Q Consensus 250 l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~---~~~~l~~l~~~~~~G~~l~~~~~~~~~ 322 (544)
+..|+++++... +++..+++.++++++|++.++|+++..+.+.... ....++++|.+++||+++++++.+++.
T Consensus 241 l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 320 (576)
T 3gqw_A 241 VATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFA 320 (576)
T ss_dssp HHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHH
Confidence 999999988764 5888999999999999999999999888765542 234578999999999999999999999
Q ss_pred HHCC-----CCceeccccccccCccccccccccCCC-----------------------CccCCCeeeeccCCceEEEEc
Q 009077 323 AKLP-----HAKLGQGYGMTEAGPVLSMCLAFAKEP-----------------------FEIKSGACGTVVRNAEMKIVD 374 (544)
Q Consensus 323 ~~~~-----~~~v~~~yG~tE~~~~~~~~~~~~~~~-----------------------~~~~~~~~g~p~~~~~~~i~d 374 (544)
+.|+ ++++++.||+||++.+++.+....... ......++|+|+++++++|+|
T Consensus 321 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 400 (576)
T 3gqw_A 321 ECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN 400 (576)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC
T ss_pred HHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC
Confidence 9875 688999999999998776542211100 001123789999999999999
Q ss_pred CCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHH
Q 009077 375 PDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELE 454 (544)
Q Consensus 375 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie 454 (544)
+++++++.|+.|||+++|+++++||+++++.+...+ .+|||+|||+|++ +||++++.||+||+||++|++|+|.+||
T Consensus 401 -~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE 477 (576)
T 3gqw_A 401 -EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIE 477 (576)
T ss_dssp -TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHH
T ss_pred -CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHH
Confidence 689999999999999999999999999988776655 7899999999999 7999999999999999999999999999
Q ss_pred HHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcc-cCCCcccEEEEec--CCCCCCCcccchH
Q 009077 455 AMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV-VFYKRINRVFFTD--SIPKAPSGKILRK 531 (544)
Q Consensus 455 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~~~~~~--~lP~t~~GK~~r~ 531 (544)
++|.++|+|.+++|+++.++. +..++++..........+++.+++...+ +.+++|..+.+++ +||+|++||++|+
T Consensus 478 ~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~ 555 (576)
T 3gqw_A 478 YIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARA 555 (576)
T ss_dssp HHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHH
T ss_pred HHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHH
Confidence 999999999999998887764 3444555544444445568888998888 6799999888887 8999999999999
Q ss_pred HHHhHHhhc
Q 009077 532 DLRTKLAAG 540 (544)
Q Consensus 532 ~l~~~~~~~ 540 (544)
+|++++.+.
T Consensus 556 ~l~~~~~~~ 564 (576)
T 3gqw_A 556 EAKKRYQKA 564 (576)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=4.8e-72 Score=584.14 Aligned_cols=503 Identities=18% Similarity=0.192 Sum_probs=317.7
Q ss_pred CCCCCCCCHHHHHHhhhccCCCccEEEeCCC--------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH
Q 009077 19 IYIPNHLPLHTYCFENISQFADRPCIINGPT--------GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF 90 (544)
Q Consensus 19 ~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~ 90 (544)
...+..+|+.++|.++++++|+++|+++.+. .+++||+||.++++++|+.|.+.|+ +||+|+++++|++++
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 3445668999999999999999999986531 2789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCCccHHHHHhhcc
Q 009077 91 VFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQAD 170 (544)
Q Consensus 91 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 170 (544)
++++|||+++|++++|++|.++.+++.++++.++++++|+++.....+.. ......+... ...+.+......
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~ 164 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL---PPETKVLDTK-----NQSFIENLSTQD 164 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC---CTTCEEEETT-----CHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc---Cccceeeccc-----chhhhhhccccc
Confidence 99999999999999999999999999999999999999998664322100 0011222111 112222222221
Q ss_pred CCCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhc----CCCCccCCCCeEEEEecchhhHHhhHHHH
Q 009077 171 ENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG----ENPNLYLHKEDVILCVLPLFHIYSLNSVL 246 (544)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 246 (544)
.........++++++++|||||||.||+|.++|+++......+... ....+.+...+++++..|++|..++ ..+
T Consensus 165 -~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (562)
T 3ite_A 165 -TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEM 242 (562)
T ss_dssp -CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHH
T ss_pred -ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHH
Confidence 1122234567889999999999999999999999998776654321 1113457788999999999988777 567
Q ss_pred HHHHHhCcEEEEccCcC-HHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHC
Q 009077 247 LCALRVGAAILIMQKFD-IVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325 (544)
Q Consensus 247 ~~~l~~g~~~v~~~~~~-~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~ 325 (544)
+.++..|+++++.+... +..+++.++++++|++.++|+++..+... ...++++|.+++||+++++++.+.+++.+
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 318 (562)
T 3ite_A 243 FLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD 318 (562)
T ss_dssp HHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred HHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC
Confidence 78899999999877543 56788999999999999999988876433 34578999999999999999999999877
Q ss_pred CCCceeccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChh
Q 009077 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDRE 405 (544)
Q Consensus 326 ~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~ 405 (544)
++++++.||+||++..++.... .......++|+|+++++++++|++.+.+++.|+.|||+++|++++.||+++++
T Consensus 319 -~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~ 393 (562)
T 3ite_A 319 -RVALVNVYGPTEVTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPD 393 (562)
T ss_dssp -SCEEEEEECCGGGCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTT
T ss_pred -CcEEEEeeccchheeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcc
Confidence 8999999999999866554321 12345678999999999999998888999999999999999999999999998
Q ss_pred hhhhhc-CCCCceecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcC-CCcceeEEEeeeCCCCCceEEEE
Q 009077 406 ATETTI-DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH-PNISDAAVVPMKDEAAGEVPVAF 483 (544)
Q Consensus 406 ~~~~~~-~~~~~~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~ 483 (544)
.+...+ +.++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++ +.+.+++|++..++..++..+++
T Consensus 394 ~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 473 (562)
T 3ite_A 394 AKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVS 473 (562)
T ss_dssp CCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------------------
T ss_pred ccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEE
Confidence 876554 2334999999999999999999999999999999999999999999998 77888888888888777666665
Q ss_pred EEecCCCCCC-------------HHHHHHHHHhcccCCCcccEEEEecCCCCC-CCcccchHHHHhHHhhcc
Q 009077 484 VVRSNGSKIT-------------EDEIKQYISKQVVFYKRINRVFFTDSIPKA-PSGKILRKDLRTKLAAGD 541 (544)
Q Consensus 484 v~~~~~~~~~-------------~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t-~~GK~~r~~l~~~~~~~~ 541 (544)
++...+.... .++|+++++++|+.|++|+.|+++++||+| ++||++|++|++++.+-.
T Consensus 474 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~ 545 (562)
T 3ite_A 474 FVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLS 545 (562)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccC
Confidence 5544333222 348999999999999999999999999998 899999999999987643
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.6e-59 Score=476.53 Aligned_cols=394 Identities=21% Similarity=0.278 Sum_probs=320.0
Q ss_pred CCCHHHHHHhhhccCCCccEEEeCC-----CC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHH
Q 009077 24 HLPLHTYCFENISQFADRPCIINGP-----TG--DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLG 96 (544)
Q Consensus 24 ~~~~~~~l~~~a~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA 96 (544)
.+|+.++|.++++++|+++|+++.+ .+ +++||+||.++++++|++|.++|+ +||+|+|+++|++++++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 4899999999999999999998753 12 789999999999999999999996 999999999999999999999
Q ss_pred HHhhCCeEeecCC---CCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhc----CcEEEEeCCCCCCCccHHHHHhhc
Q 009077 97 ASYIGATSTTANP---FYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH----GARIVTIDPPPENCLHFSELITQA 169 (544)
Q Consensus 97 ~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~ 169 (544)
|+++|+++||+++ .++.+++.++++.++++++|++......+.+..... ...++.++... ..
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 170 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-----------LD 170 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----------TT
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----------cc
Confidence 9999999999999 778999999999999999999998877666543221 11233222111 11
Q ss_pred cCCCCCccCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCC------CeEEEEecchhhHHhhH
Q 009077 170 DENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHK------EDVILCVLPLFHIYSLN 243 (544)
Q Consensus 170 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~~ 243 (544)
.....+.....++++++++|||||||.||+|.++|+++...+......+ .+.+ ++++++.+|++|.+|++
T Consensus 171 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~~~~~~d~~l~~~pl~h~~g~~ 246 (480)
T 3t5a_A 171 APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY----FADTDGIPPPNSALVSWLPFYHDMGLV 246 (480)
T ss_dssp CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH----CTTTTTCCCTTEEEEECCCTTSTTHHH
T ss_pred cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh----ccccccCCCCCCeEEEeCCCcCccHHH
Confidence 1112233456789999999999999999999999999988877665532 3444 89999999999999987
Q ss_pred HHHHHHHHhCcEEEEccCc----CHHHHHHHHHhccceeccCcHHHHHHHHhc----CCCCCCCCCCceEEEEecccCCH
Q 009077 244 SVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAKS----GDVDKYDMSSIRTVMSGAAPMGK 315 (544)
Q Consensus 244 ~~~~~~l~~g~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~----~~~~~~~l~~l~~~~~~G~~l~~ 315 (544)
..++.++..|+++++.+.. ++..+++.++++++| +..+|+++..++.. .......++++|.+++||+++++
T Consensus 247 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~ 325 (480)
T 3t5a_A 247 IGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQA 325 (480)
T ss_dssp HHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCH
T ss_pred HHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCH
Confidence 8889999999999998753 899999999999999 78999998888764 22334568999999999999999
Q ss_pred HHHHHHHHHC-----CCCceeccccccccCccccccccccCCC--------------------CccCCCeeeeccCCceE
Q 009077 316 ELEDAVRAKL-----PHAKLGQGYGMTEAGPVLSMCLAFAKEP--------------------FEIKSGACGTVVRNAEM 370 (544)
Q Consensus 316 ~~~~~~~~~~-----~~~~v~~~yG~tE~~~~~~~~~~~~~~~--------------------~~~~~~~~g~p~~~~~~ 370 (544)
++.+++.+.| +++.+++.||+||++.+++......... ......++|+|++ +++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~ 404 (480)
T 3t5a_A 326 ATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIV 404 (480)
T ss_dssp HHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEE
T ss_pred HHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEE
Confidence 9999999998 3468999999999997766542211100 0233458999999 999
Q ss_pred EEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcC-----------CCCceecCceEEEcCCCcEEEEcc
Q 009077 371 KIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID-----------KEGWLHTGDIGYIDDDDELFIVDR 436 (544)
Q Consensus 371 ~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TgDl~~~~~~g~l~~~GR 436 (544)
+|+|++++++++.|+.|||+|+|++++.||+++++.+...|. .+|||+|||+|+++ ||++++.||
T Consensus 405 ~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 405 RIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred EEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999987789999999999999999999999999999998884 57799999999996 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.1e-51 Score=403.43 Aligned_cols=316 Identities=18% Similarity=0.236 Sum_probs=266.9
Q ss_pred CCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEcc
Q 009077 181 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ 260 (544)
Q Consensus 181 ~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 260 (544)
.+++++|+|||||||.||+|.+||+++.+.+..... .++++++|++++.+|++|.+|+ ..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecC
Confidence 478999999999999999999999999988887766 4468999999999999999998 55777888888888865
Q ss_pred CcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccccccC
Q 009077 261 KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340 (544)
Q Consensus 261 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~tE~~ 340 (544)
.. ...++.++++++|++.++|+++..+++.... ...++++|.+++||+++++++.+++++. ++++++.||+||++
T Consensus 111 ~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~ 185 (358)
T 4gs5_A 111 PT--ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETV 185 (358)
T ss_dssp CC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGS
T ss_pred cc--ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEecccccccc
Confidence 42 1235678899999999999999999987653 3468899999999999999999999874 89999999999998
Q ss_pred ccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCceecC
Q 009077 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTG 420 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~Tg 420 (544)
..++... ......+.+|.+.|++++.+.+ .||++++|+.. .++||+||
T Consensus 186 ~~~~~~~-----~~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TG 233 (358)
T 4gs5_A 186 SHVALKA-----LNGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTN 233 (358)
T ss_dssp SEEEEEE-----CSSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEE
T ss_pred ceeeccc-----ccccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecC
Confidence 7665432 1233457789999999887744 39999988632 57899999
Q ss_pred ceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHH---HcCCCcceeEEE-eeeCCCCCceEEEEEEecCCCCCCHHH
Q 009077 421 DIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAML---IAHPNISDAAVV-PMKDEAAGEVPVAFVVRSNGSKITEDE 496 (544)
Q Consensus 421 Dl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 496 (544)
|+|+++++| ++++||+||+||.+|++|+|.+||+.| .++|.|.+++|+ +.+++..++.++++++... .....++
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~ 311 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTER 311 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHH
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHH
Confidence 999999988 667799999999999999999999876 457999999886 5677788888888887543 3455678
Q ss_pred HHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhc
Q 009077 497 IKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAG 540 (544)
Q Consensus 497 l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 540 (544)
|+++++++|+.|++|+.|+++++||+|++||++|++|++++.+.
T Consensus 312 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 312 LTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred HHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999998765
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.4e-49 Score=397.74 Aligned_cols=331 Identities=19% Similarity=0.211 Sum_probs=276.2
Q ss_pred CCCC-CCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEE
Q 009077 178 KINP-DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAI 256 (544)
Q Consensus 178 ~~~~-~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 256 (544)
...+ +++++++|||||||.||+|.++|+++..........+. .+++.++|++++.+|++|..+.+..++.++..|+++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY-MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH-HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH-HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 4556 89999999999999999999999999776655432211 235789999999999987777767788999999999
Q ss_pred EEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCC--CCCceEEEEecccCCHHHHHHHHHHCCCCceeccc
Q 009077 257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (544)
Q Consensus 257 v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~y 334 (544)
++.+..++..+++.++++++|++.++|+++..|++........ ++++|.+++|||++++++.+.+++.| ++++++.|
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 160 VPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp ECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 9998889999999999999999999999999998875444333 68999999999999999999999999 89999999
Q ss_pred cccccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCC
Q 009077 335 GMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414 (544)
Q Consensus 335 G~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 414 (544)
|+||+++.+.... + ......+.|.++++++++|++++++++.|+.|||+++|.. ...+ ++
T Consensus 239 G~TE~~~~~~~~~-~------~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~ 298 (436)
T 3qov_A 239 GMTEMNGPGVAFE-C------QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PL 298 (436)
T ss_dssp EEGGGTEEEEEEE-C------TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CC
T ss_pred cchhhcCCeeEEe-c------CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eE
Confidence 9999954322211 1 1123467788899999999889999999999999999842 1223 68
Q ss_pred CceecCceEEEcCCC------c---EEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEE
Q 009077 415 GWLHTGDIGYIDDDD------E---LFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485 (544)
Q Consensus 415 ~~~~TgDl~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 485 (544)
+||+|||+|+++++| + +++.||.||+||++|.+|+|.+||++|.++|+|.+++|+++.++..++.++++|+
T Consensus 299 ~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~ 378 (436)
T 3qov_A 299 IRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVE 378 (436)
T ss_dssp CSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 899999999999998 5 6999999999999999999999999999999999999999988888899999999
Q ss_pred ecCCCCCC----HHHHHHHHHhcccCC-CcccEEEEec--CCCCCCCcccchHH
Q 009077 486 RSNGSKIT----EDEIKQYISKQVVFY-KRINRVFFTD--SIPKAPSGKILRKD 532 (544)
Q Consensus 486 ~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~~~~~~--~lP~t~~GK~~r~~ 532 (544)
+. +...+ .+++++++++.++.+ ++|..+.+++ +||+|+ ||++|..
T Consensus 379 ~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 379 LS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred Ec-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 88 55554 678999999999988 8999999998 999999 9999864
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2e-48 Score=393.78 Aligned_cols=334 Identities=19% Similarity=0.214 Sum_probs=275.9
Q ss_pred CCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchh-hHHhhHHHHHHHHHhCcEE
Q 009077 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLF-HIYSLNSVLLCALRVGAAI 256 (544)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~~~~~~~~l~~g~~~ 256 (544)
...++++++++|||||||.||+|.++|+++..........+. .+++.++|++++.+|++ |..++ ...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEE
Confidence 456789999999999999999999999998766544332111 24578999999999984 55554 6678889999999
Q ss_pred EEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCC--CCCceEEEEecccCCHHHHHHHHHHCCCCceeccc
Q 009077 257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (544)
Q Consensus 257 v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~y 334 (544)
++.+..+++.+++.++++++|++.++|+++..|++........ ++++|.+++||+++++++++.+++.| ++++++.|
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 244 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIY 244 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEE
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEecc
Confidence 9988889999999999999999999999999998765433332 47899999999999999999999999 89999999
Q ss_pred cccccCc--cccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcC
Q 009077 335 GMTEAGP--VLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID 412 (544)
Q Consensus 335 G~tE~~~--~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 412 (544)
|+||+++ ++..+. . .....+.|.++++++++|++++++++.|+.|||+++|.. ...+
T Consensus 245 G~TE~~g~~~~~~~~-----~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t------------~~~~- 303 (443)
T 2y4o_A 245 GLSEVMGPGVACECV-----E---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT------------KEAM- 303 (443)
T ss_dssp EETTTTEEEEEEECT-----T---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-
T ss_pred CchhhcCCeEEeccC-----C---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC------------cccC-
Confidence 9999743 222221 0 111256677899999999878999999999999998731 1233
Q ss_pred CCCceecCceEEEcCC-CcE-----EEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEe
Q 009077 413 KEGWLHTGDIGYIDDD-DEL-----FIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486 (544)
Q Consensus 413 ~~~~~~TgDl~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 486 (544)
+++||+|||+|+++++ |++ ++.||.||+|+++|.+|+|.+||++|.++|+|.+++++++.++..++.++++|++
T Consensus 304 p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~ 383 (443)
T 2y4o_A 304 PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVEL 383 (443)
T ss_dssp CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEE
Confidence 6789999999999999 986 8999999999999999999999999999999999999988877677888999988
Q ss_pred cC--C---CCCCHHHHHHHHHhcccCC-CcccEEEEe--cCCCCCCCcccchHHHHh
Q 009077 487 SN--G---SKITEDEIKQYISKQVVFY-KRINRVFFT--DSIPKAPSGKILRKDLRT 535 (544)
Q Consensus 487 ~~--~---~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GK~~r~~l~~ 535 (544)
.+ + ...+.++++++++++|+.+ ++|..+.++ ++||+|++||++|...++
T Consensus 384 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 384 RSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred CCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 65 2 2234578999999999886 588888887 599999999999975443
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=9.7e-48 Score=388.01 Aligned_cols=330 Identities=19% Similarity=0.235 Sum_probs=274.7
Q ss_pred CCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecch-hhHHhhHHHHHHHHHhCcEE
Q 009077 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNSVLLCALRVGAAI 256 (544)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~g~~~ 256 (544)
...++++++++|||||||.||+|.++|+++............ .+++.++|++++.+|+ +|..++ ...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR-AAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEE
Confidence 456789999999999999999999999998766544332111 2457899999999998 566655 5678899999999
Q ss_pred EEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCC--CCCceEEEEecccCCHHHHHHHHHHCCCCceeccc
Q 009077 257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (544)
Q Consensus 257 v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~y 334 (544)
++.+..+++.+++.++++++|++.++|+++..|++........ ++++|.+++||+++++++.+.+++.| ++++++.|
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 242 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIY 242 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecC
Confidence 9888889999999999999999999999999998765433332 47899999999999999999999999 89999999
Q ss_pred cccccC-c-cccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcC
Q 009077 335 GMTEAG-P-VLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID 412 (544)
Q Consensus 335 G~tE~~-~-~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 412 (544)
|+||++ . ++..+. . .....+.|.+++.++|+|++++++++.|+.|||+++|.. ...+
T Consensus 243 G~TE~~g~~~~~~~~-----~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t------------~~~~- 301 (437)
T 2y27_A 243 GLSEVMGPGVASECV-----E---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT------------KEAL- 301 (437)
T ss_dssp EETTTTEEEEEECCT-----T---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-
T ss_pred CchhhcCCeeEEecC-----C---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC------------cCCc-
Confidence 999984 3 222221 0 111356678899999999878999999999999998731 2233
Q ss_pred CCCceecCceEEEcC-CCcE-----EEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEe
Q 009077 413 KEGWLHTGDIGYIDD-DDEL-----FIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486 (544)
Q Consensus 413 ~~~~~~TgDl~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 486 (544)
+++||+|||+|++++ +|++ ++.||.+|+|+++|++|+|.+||++|.++|+|.+++|+++.++..++.++++|++
T Consensus 302 ~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 302 PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECB
T ss_pred hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEE
Confidence 679999999999998 6985 8999999999999999999999999999999999999988877778889999988
Q ss_pred cCCCC---CCHHHHHHHHHhcccCC-CcccEEEEe--cCCCCCCCcccchHH
Q 009077 487 SNGSK---ITEDEIKQYISKQVVFY-KRINRVFFT--DSIPKAPSGKILRKD 532 (544)
Q Consensus 487 ~~~~~---~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GK~~r~~ 532 (544)
.++.. .+.+++++++++.|+.+ ++|..+.++ ++||+|+ ||++|..
T Consensus 382 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 382 CPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred CCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 76543 34578999999999987 588888888 5999999 9999974
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=6.9e-31 Score=258.67 Aligned_cols=242 Identities=16% Similarity=0.147 Sum_probs=184.1
Q ss_pred CCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecch-hhHHhhHHHHHHHHHhCcEE
Q 009077 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNSVLLCALRVGAAI 256 (544)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~g~~~ 256 (544)
...++++++++|||||||.||+|.++|+++.....+...... ..++.++|++++.+|+ +|..|+. ..+.++..|+ +
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~ 163 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ-HRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-M 163 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT-TSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-C
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH-hhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-E
Confidence 357789999999999999999999999999988876544333 5578899999999999 9988884 4555588888 6
Q ss_pred EEccCcCHH-----------------------HHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccC
Q 009077 257 LIMQKFDIV-----------------------KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPM 313 (544)
Q Consensus 257 v~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l 313 (544)
++...+++. .+++.++++++|++.++|+++..|++........++++|.+++|||++
T Consensus 164 v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l 243 (369)
T 3hgu_A 164 FFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTEL 243 (369)
T ss_dssp EECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCC
T ss_pred EECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccC
Confidence 776667777 888899999999999999999999877443334567899999999999
Q ss_pred CHHHHHHHH-HHCCCCceeccccccccCccccccccccCCCCccCCCeeeec------cCCceEEEEcCCCCCCCCCCCc
Q 009077 314 GKELEDAVR-AKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTV------VRNAEMKIVDPDTGISLPRNQA 386 (544)
Q Consensus 314 ~~~~~~~~~-~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p------~~~~~~~i~d~~~~~~~~~g~~ 386 (544)
+++++++++ +.||++++++.||+||++.++..+.. .+.|.| +++++++|+|++++++++.|+.
T Consensus 244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~ 313 (369)
T 3hgu_A 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGER 313 (369)
T ss_dssp CHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE
T ss_pred CHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc----------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc
Confidence 999999999 99999999999999999866543310 136777 9999999999878999999999
Q ss_pred eeEEEecCcccccccCChhhhhhhcCCCCceecCceEEEcCC--C-------cEEEEccccceEEeCce
Q 009077 387 GEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDD--D-------ELFIVDRLKELIKFKGF 446 (544)
Q Consensus 387 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~~--g-------~l~~~GR~~d~i~~~G~ 446 (544)
|||+|++.... .+ -.+|+|||+++..+. | .+..++|.++..++.|.
T Consensus 314 GEl~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 314 GNVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred eEEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99999874211 11 235999999988653 2 24566777777776664
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.51 E-value=3.9e-14 Score=111.52 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=73.0
Q ss_pred ccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCC----CHHHHHHHHHhccc-CCC
Q 009077 435 DRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKI----TEDEIKQYISKQVV-FYK 509 (544)
Q Consensus 435 GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~-~~~ 509 (544)
||++|+|+++|.+++|.+||++|.++|+|.+++++++.++..++.+++++++ ++... +.+++.+.++..+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888877778889999988 55322 33456666655553 234
Q ss_pred cccEEEEec--CCCCCCCcccchH
Q 009077 510 RINRVFFTD--SIPKAPSGKILRK 531 (544)
Q Consensus 510 ~p~~~~~~~--~lP~t~~GK~~r~ 531 (544)
++..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 444788887 89999 9999884
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.50 E-value=6.4e-14 Score=110.59 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=73.7
Q ss_pred ccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCH---HHHHHHHHhcccC-CCc
Q 009077 435 DRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE---DEIKQYISKQVVF-YKR 510 (544)
Q Consensus 435 GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~-~~~ 510 (544)
.|.||+|+++|.+++|.+||++|.++|+|.+++++++.++..++.+.++++..++...+. +++.+.+...+.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999999999999999999887765554 3444555555433 233
Q ss_pred ccEEEEe--cCCCCCCCcccchH
Q 009077 511 INRVFFT--DSIPKAPSGKILRK 531 (544)
Q Consensus 511 p~~~~~~--~~lP~t~~GK~~r~ 531 (544)
+..+.++ ++|||| +||++|-
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp CCEEEEECTTCSCCC----CCCE
T ss_pred ccceEEEcCCeecCC-CCCcchh
Confidence 4455666 589998 7999883
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.99 E-value=6.6e-09 Score=104.80 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=89.4
Q ss_pred CCCceE---EEEecccCCHHHHHHHHHHCCCCcee-ccccccccCccccccccccCCCCccCCCeeeeccCCceEEEEcC
Q 009077 300 MSSIRT---VMSGAAPMGKELEDAVRAKLPHAKLG-QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDP 375 (544)
Q Consensus 300 l~~l~~---~~~~G~~l~~~~~~~~~~~~~~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~ 375 (544)
+++++. ++.||- ..-.+.++..+++..+. ..|++||+- ++.-. .+...... ..+-..+..+..+.++.
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~---~p~~~~~~-~~~~L~~~~~ffEFip~ 367 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINL---DPLCKPED-VSYTFMPNMSYFEFIPM 367 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECS---CTTSCGGG-CCEEECTTSSEEEEEEC
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeecc---CCCCCccc-CceeecCCcEEEEEEec
Confidence 567544 344442 34455566656677777 899999953 33211 11000000 11111122356677753
Q ss_pred CCC--------CCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCceecCceEEEcC----CCcEEEEccccceEEe
Q 009077 376 DTG--------ISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDD----DDELFIVDRLKELIKF 443 (544)
Q Consensus 376 ~~~--------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~----~g~l~~~GR~~d~i~~ 443 (544)
++. ..++.|+.+||+++..+ |.| .|++||+.++.. ..++.|.||.++++.+
T Consensus 368 ~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~ 430 (581)
T 4eql_A 368 DGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSI 430 (581)
T ss_dssp STTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECS
T ss_pred cccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEe
Confidence 221 34678999999997752 222 399999999875 3568999999999999
Q ss_pred CceeeCcHHHHHHHHcCC--------CcceeEEEe
Q 009077 444 KGFQVAPAELEAMLIAHP--------NISDAAVVP 470 (544)
Q Consensus 444 ~G~~v~~~~ie~~l~~~~--------~v~~~~v~~ 470 (544)
.|+++...+||+++.+.. .|.|..+..
T Consensus 431 ~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~ 465 (581)
T 4eql_A 431 DSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYA 465 (581)
T ss_dssp SSCCEEHHHHHHHHHHC--------------CEEE
T ss_pred eeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEec
Confidence 999999999999998653 256666553
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.96 E-value=6e-09 Score=105.18 Aligned_cols=164 Identities=14% Similarity=0.114 Sum_probs=100.3
Q ss_pred cHHHHHHHHhcCCCCC------CCCCCceEE--EEecccCCHHHHHHHHHHCCCCcee-ccccccccCccccccccccCC
Q 009077 282 VPPIVLAVAKSGDVDK------YDMSSIRTV--MSGAAPMGKELEDAVRAKLPHAKLG-QGYGMTEAGPVLSMCLAFAKE 352 (544)
Q Consensus 282 ~P~~l~~l~~~~~~~~------~~l~~l~~~--~~~G~~l~~~~~~~~~~~~~~~~v~-~~yG~tE~~~~~~~~~~~~~~ 352 (544)
.|....++.+...... .-+++++.+ +.+|. + ..-.+.++..+++..++ ..|++||+- ++... .
T Consensus 277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~-----~ 348 (609)
T 4b2g_A 277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGA-M-AQYIPTLDYYSGGLPLACTMYASSECY-FGLNL-----N 348 (609)
T ss_dssp CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGG-G-GGGHHHHHHHHTSCCEECCEEECSSCE-EEECS-----C
T ss_pred CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCC-h-HHHHHHHHHHcCCCccccCccccccee-eeeec-----C
Confidence 4556666665443321 225675542 33333 2 33445566555677777 899999963 33211 1
Q ss_pred CCcc-CCCeeeeccCCceEEEEcCCCC---------------CCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCc
Q 009077 353 PFEI-KSGACGTVVRNAEMKIVDPDTG---------------ISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGW 416 (544)
Q Consensus 353 ~~~~-~~~~~g~p~~~~~~~i~d~~~~---------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 416 (544)
+.+. ....+-..+..+..+.++.++. ..++.|+.+||+++..+ |+|+
T Consensus 349 p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------- 411 (609)
T 4b2g_A 349 PMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR-------------- 411 (609)
T ss_dssp TTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------
T ss_pred CCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------
Confidence 1110 0111111223356666643221 35688999999996652 3333
Q ss_pred eecCceEEEcC----CCcEEEEccccceEEeCceeeCcHHHHHHHHcC------C--CcceeEEEe
Q 009077 417 LHTGDIGYIDD----DDELFIVDRLKELIKFKGFQVAPAELEAMLIAH------P--NISDAAVVP 470 (544)
Q Consensus 417 ~~TgDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~------~--~v~~~~v~~ 470 (544)
|++||+.++.. ..++.|.||.++++.+.|+++...+||+++.+. . .|.|..+..
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 99999999874 457999999999999999999999999988742 2 256666653
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.88 E-value=7.8e-09 Score=103.94 Aligned_cols=162 Identities=10% Similarity=0.047 Sum_probs=98.9
Q ss_pred CCCceE--EEEecccCCHHHHHHHHHHCCCCcee-ccccccccCccccccccccCCCCccC-CCeeeeccCCceEEEEcC
Q 009077 300 MSSIRT--VMSGAAPMGKELEDAVRAKLPHAKLG-QGYGMTEAGPVLSMCLAFAKEPFEIK-SGACGTVVRNAEMKIVDP 375 (544)
Q Consensus 300 l~~l~~--~~~~G~~l~~~~~~~~~~~~~~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~-~~~~g~p~~~~~~~i~d~ 375 (544)
+++++. ++.+|.. ..-.+.++..+++..+. ..|++||+- ++.-. .+.... ....--.+..+..+.++.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~-----~p~~~~~~~~~~L~p~~~ffEFiP~ 372 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANV-----TPRLSPEEATFAVIPNLGYFEFLPV 372 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEE-EEECC-----CTTSCTTTCCEEECTTSCEEEEEEC
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceecccee-eeeec-----CCCCCccccceeecCCcEEEEEEec
Confidence 577764 3455533 33445666666677777 999999963 33211 111110 011111222345566643
Q ss_pred CCC----------CCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCceecCceEEEcCC----CcEEEEccccceE
Q 009077 376 DTG----------ISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDD----DELFIVDRLKELI 441 (544)
Q Consensus 376 ~~~----------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgDl~~~~~~----g~l~~~GR~~d~i 441 (544)
++. ..++.|+.+||+++..+ |.| .|++||+.++... ..+.|.||.++++
T Consensus 373 ~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l 435 (581)
T 4epl_A 373 SETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLIL 435 (581)
T ss_dssp -------CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCB
T ss_pred ccccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeE
Confidence 221 35688999999997752 222 3999999998642 4689999999999
Q ss_pred EeCceeeCcHHHHHHHHcC------C--CcceeEEEeeeCCCCCceEEEEEEec
Q 009077 442 KFKGFQVAPAELEAMLIAH------P--NISDAAVVPMKDEAAGEVPVAFVVRS 487 (544)
Q Consensus 442 ~~~G~~v~~~~ie~~l~~~------~--~v~~~~v~~~~~~~~~~~~~~~v~~~ 487 (544)
.+.|+++...+||+++.+. . .|.|..+..-.. .....-+.++...
T Consensus 436 ~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~ 488 (581)
T 4epl_A 436 SINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEIS 488 (581)
T ss_dssp CSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEES
T ss_pred EeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeec
Confidence 9999999999999988752 2 467777665222 2222334455654
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.41 E-value=0.64 Score=45.70 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=73.7
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--cHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEE
Q 009077 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP--QFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKII 128 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 128 (544)
-.+|.+.+...+..+++.+...|++++|++...++-+. ..+...++++..|+.++++++. +.+.+...++..++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEE
Confidence 45899999988888888888889999999999888543 3345578889999999987764 78889999999999999
Q ss_pred EEecchhHHHHHH
Q 009077 129 ITQAVYNDKVRDL 141 (544)
Q Consensus 129 i~~~~~~~~~~~~ 141 (544)
+..+.....+.+.
T Consensus 187 ~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 187 MVTPSYMLSIADE 199 (437)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9988877666543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.48 E-value=0.92 Score=44.66 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=73.8
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--cHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEE
Q 009077 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP--QFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKII 128 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 128 (544)
-.+|.+.+...+..+++.+...|+.++|++...++-+. ..+...++++..|+.++++++. +.+.+...++..++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 45899999988888888888889999999999888643 3345678889999999988764 78889999999999999
Q ss_pred EEecchhHHHHHH
Q 009077 129 ITQAVYNDKVRDL 141 (544)
Q Consensus 129 i~~~~~~~~~~~~ 141 (544)
+..+.....+.+.
T Consensus 189 ~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 189 LVTPSYMLNLIDE 201 (443)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9988877665543
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.32 E-value=0.87 Score=44.73 Aligned_cols=90 Identities=18% Similarity=0.083 Sum_probs=74.3
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--ccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEE
Q 009077 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNC--PQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKII 128 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 128 (544)
-.+|.+.+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++.++. +.+.+...++..++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 4699999999998888888888999999999988743 33455678889999999987764 67888999999999999
Q ss_pred EEecchhHHHHHH
Q 009077 129 ITQAVYNDKVRDL 141 (544)
Q Consensus 129 i~~~~~~~~~~~~ 141 (544)
+..+.....+.+.
T Consensus 183 ~~~P~~~~~l~~~ 195 (436)
T 3qov_A 183 HAIPSYAIRLAEV 195 (436)
T ss_dssp ECCHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9988877666544
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=84.38 E-value=13 Score=36.84 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=74.2
Q ss_pred cCCCccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecC
Q 009077 37 QFADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTAN 108 (544)
Q Consensus 37 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~ 108 (544)
..|+.+|++.-.+| -.+|++.+...+..+.. ..++.+++++...+|-.-.+ +..+++++..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 35677777532222 46899998877665543 45889999999888865332 445678889999988876
Q ss_pred CCCCHHHHHHHHHhcCceEEEEecchhHHHHH
Q 009077 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (544)
Q Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (544)
+ .+...+...++..++.++...+.....+.+
T Consensus 237 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 K-FNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp S-CCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 5 688999999999999999998887665543
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=82.34 E-value=4 Score=38.77 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=63.9
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc--HHHHHHHHHhhCCeEeecCCCCCHH--------------
Q 009077 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ--FVFAFLGASYIGATSTTANPFYTPP-------------- 114 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 114 (544)
..+|.+.+...+..+++.+...|+.++|++..++|-+.. -+...++++..|+.+++.+ .++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 458999999888877777777899999999999886333 2444556688999655543 3444
Q ss_pred ---------HHHHHHHhcCceEEEEecchhHHHH
Q 009077 115 ---------EIAKQAIASKAKIIITQAVYNDKVR 139 (544)
Q Consensus 115 ---------~l~~~l~~~~~~~vi~~~~~~~~~~ 139 (544)
.+...++..++.+++..+.....+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6666888899999998877655543
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=77.87 E-value=12 Score=37.85 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=71.1
Q ss_pred CccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH--HHHHHHHHhhCCeEeecCCC
Q 009077 40 DRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF--VFAFLGASYIGATSTTANPF 110 (544)
Q Consensus 40 ~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~ 110 (544)
+.+|++.-.+| -.+|.+.+...+......+...++.++|++...+|-.-.+ ...+++++ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 67777643322 5699999887766555443335788999998888765433 23356777 999988876 4
Q ss_pred CCHHHHHHHHHhcCceEEEEecchhHHHH
Q 009077 111 YTPPEIAKQAIASKAKIIITQAVYNDKVR 139 (544)
Q Consensus 111 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 139 (544)
.+.+.+...+++.++.+++..+.....+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 68899999999999999999887666554
No 48
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=77.64 E-value=6.6 Score=39.57 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEE
Q 009077 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (544)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~ 258 (544)
..|+.++++....| -.+|.+.+...+......+. ..++.++|++...++-+. .++..+++++..|+..+.
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLN-KIGIQQGDVIMLFLPSSP--EFVLAFLGASHRGAIITA 103 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEE
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCEEec
Confidence 35678887654322 35788888777776665554 457899999999988654 344678899999999888
Q ss_pred ccC-cCHHHHHHHHHhccceeccCcHHHHH
Q 009077 259 MQK-FDIVKLMELVQKYKVTVAPFVPPIVL 287 (544)
Q Consensus 259 ~~~-~~~~~~~~~i~~~~~t~l~~~P~~l~ 287 (544)
.+. ...+.+...+++.++..++..+....
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 133 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQACYYE 133 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEECGGGTH
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEChHHHH
Confidence 765 67888999999999998877664443
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.18 E-value=23 Score=35.65 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=73.2
Q ss_pred CCCccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHH---HHHHHHhhCCeEeec
Q 009077 38 FADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF---AFLGASYIGATSTTA 107 (544)
Q Consensus 38 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l 107 (544)
.|+.+|++.-.+| -.+|.+.+...+...+.. .++.++|++...+|-.-.+-. .+++++..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4567777532222 569999988777665543 578999999998875544322 478888999998877
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecchhHHHHHH
Q 009077 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDL 141 (544)
Q Consensus 108 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 141 (544)
+. .+...+...++..++.++...+.....+.+.
T Consensus 266 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 266 PN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 65 5788888999999999999988876655443
No 50
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=77.16 E-value=27 Score=35.00 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=73.4
Q ss_pred cCCCccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH--HH-HHHHHHhhCCeEee
Q 009077 37 QFADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF--VF-AFLGASYIGATSTT 106 (544)
Q Consensus 37 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~-~~lA~~~~G~~~v~ 106 (544)
..|+.+|++.-.+| -.+|.+.+...+..... ..++.++|++...+|-+-.+ .. .+++++..|+..+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 255 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence 34667776532222 56999998877655543 34788999998888765433 22 47888999999887
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHH
Q 009077 107 ANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDL 141 (544)
Q Consensus 107 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 141 (544)
.+. .+...+...+++.++.++...+.....+.+.
T Consensus 256 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (539)
T 1mdb_A 256 SPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDA 289 (539)
T ss_dssp CSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence 754 6788999999999999999988876665543
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=76.87 E-value=10 Score=38.34 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=75.2
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++....+..+ -..-.+|.+.+...+......+. ..++.++|++...++-+. .+...+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGIS-RKGVRKGEHVGVCIPNSI--DYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCCEEEcc
Confidence 3677777765322111 11246788888777776665544 447899999999988654 3446788999999999887
Q ss_pred cC-cCHHHHHHHHHhccceeccCcHHHHHHH
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVLAV 289 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~l 289 (544)
+. ...+.+...+++.+++.++..+.....+
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 64 6788899999999999888776655443
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=74.36 E-value=24 Score=35.15 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCccEEEe---CCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHH--HHHHHHhhCCeEeecC
Q 009077 38 FADRPCIIN---GPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF--AFLGASYIGATSTTAN 108 (544)
Q Consensus 38 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~--~~lA~~~~G~~~v~l~ 108 (544)
.|+.+|++. +..+ -.+|.+.+...+..++.. .++.++|++...+|-.-..-. .+++++ .|+..+..+
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~ 243 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC
Confidence 356666643 2222 569999988776665544 488999999988886544322 245555 898888775
Q ss_pred CCCCHHHHHHHHHhcCceEEEEecchhHHHHH
Q 009077 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (544)
Q Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (544)
..+...+...+...++.++...+.....+..
T Consensus 244 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 244 -QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 4788999999999999999998887666544
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=72.73 E-value=9.4 Score=38.07 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=73.3
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++.. ...+|.+.+...+......+. ..++.++|++...++-+. .++..+++++..|+..+..
T Consensus 19 ~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMVD---------GVRLTHRDYLARAERLASGLL-RDGVHTGDRVAILSQNCS--EMIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCCEEEec
Confidence 4677777651 236888888877776665544 347899999999988654 3446788999999999987
Q ss_pred cC-cCHHHHHHHHHhccceeccCcHHHHHH
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVLA 288 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~ 288 (544)
+. ...+.+...+++.++..++..+.+...
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 65 688889999999999998877665544
No 54
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=72.02 E-value=16 Score=36.48 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=71.4
Q ss_pred CCCccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecCC
Q 009077 38 FADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTANP 109 (544)
Q Consensus 38 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 109 (544)
.|+.++++.-.+| -.+|++.+...+..... ..++.++|++...+|-+-.. +..+++++..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4566666432222 56999988876655443 45789999999998865433 4568889999999998876
Q ss_pred C--CCHHHHHHHHHhcCceEEEEecchhHHH
Q 009077 110 F--YTPPEIAKQAIASKAKIIITQAVYNDKV 138 (544)
Q Consensus 110 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 138 (544)
. .++..+...++..++.++...+.....+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4678888999999999999887765443
No 55
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=71.95 E-value=16 Score=36.91 Aligned_cols=89 Identities=8% Similarity=-0.008 Sum_probs=67.1
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEE
Q 009077 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIII 129 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 129 (544)
-.+|.+.+..........+...++.+++++...+|-.-.+ +...++++..|+..+.++. .+...+...++..++.+++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYR-FEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHcCCeEEE
Confidence 5689998877665544444335788999999888865432 4556788899999888754 6788999999999999999
Q ss_pred EecchhHHHHH
Q 009077 130 TQAVYNDKVRD 140 (544)
Q Consensus 130 ~~~~~~~~~~~ 140 (544)
..+.....+..
T Consensus 287 ~~P~~~~~l~~ 297 (550)
T 3rix_A 287 LVPTLFSFFAK 297 (550)
T ss_dssp ECHHHHHHHHH
T ss_pred eCcHHHHHHHh
Confidence 98877665543
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=71.02 E-value=14 Score=37.24 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++....+ ....+|.+.+...+......+. ..++.++|++...++-+. .+...+++++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHF--RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEEec
Confidence 3566776643211 1245788888777766655444 457899999999988654 3446788999999999887
Q ss_pred cC-cCHHHHHHHHHhccceeccCcHHHHHHH
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVLAV 289 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~l 289 (544)
+. ...+.+...+++.++..++..+.+...+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 64 6788899999999999988777654433
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=69.58 E-value=15 Score=36.43 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=70.6
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++... + ...+|.+.+...+......+. ..++.++|++...++-+. .+...+++++..|+..+..
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSA--DVVIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCcEEEec
Confidence 45677776532 1 246888888777766655444 357889999999988654 3346788999999998877
Q ss_pred cC-cCHHHHHHHHHhccceeccC--cHHHHHHH
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPF--VPPIVLAV 289 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~--~P~~l~~l 289 (544)
+. ...+.+...+++.+++.++. .+.....+
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 64 67888999999999988776 55444433
No 58
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=68.88 E-value=13 Score=37.34 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=69.4
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++.. | ..+|...+...+......+. ..++.++|++...++-+.. +...+++++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALR-TLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEec
Confidence 4567777642 1 35788888777766655443 4578899999999886543 346688999999998887
Q ss_pred cC-cCHHHHHHHHHhccceeccCcHHHH
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPFVPPIV 286 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~P~~l 286 (544)
+. ...+.+...+++.++..++..+...
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 131 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALV 131 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhh
Confidence 64 6788888899888888877765543
No 59
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=68.63 E-value=15 Score=36.20 Aligned_cols=107 Identities=13% Similarity=0.035 Sum_probs=77.1
Q ss_pred CCCCEEEEecCC--CCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEE
Q 009077 180 NPDDVVALPYSS--GTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257 (544)
Q Consensus 180 ~~~~~~~i~~TS--GtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v 257 (544)
.|+.++++.... +.+| ....+|.+.+...+..+...+.. .+. ++|++...++-+. .++..+++++..|+..+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~v 110 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGL--EYVVAFLGALQAGRIAV 110 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSH--HHHHHHHHHHHTTCEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcH--HHHHHHHHHHHhCcEEE
Confidence 467787776542 2222 23578999998888877776663 355 8999998887654 34467889999999998
Q ss_pred EccC----cCHHHHHHHHHhccceeccCcHHHHHHHHhc
Q 009077 258 IMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKS 292 (544)
Q Consensus 258 ~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 292 (544)
..+. ...+.+...+++.++..++..+.....+.+.
T Consensus 111 pl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 111 PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp EECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred eeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 8754 3567888899999999988887766665543
No 60
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=67.78 E-value=24 Score=33.14 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=63.2
Q ss_pred CccEE---EeCCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecCCCC
Q 009077 40 DRPCI---INGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTANPFY 111 (544)
Q Consensus 40 ~~~a~---~~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~ 111 (544)
|.+|+ +.+..+ -.+|++.+...+..++. ..+++++|++...+|-.-.+ +..++..+..|+..+..++..
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~ 113 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTA 113 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccc
Confidence 44554 444444 56999998877655544 35789999999888755332 445666778888888777643
Q ss_pred CHHHHHHHHHhcCceEEEEecchhHHHH
Q 009077 112 TPPEIAKQAIASKAKIIITQAVYNDKVR 139 (544)
Q Consensus 112 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 139 (544)
. ....++..++..+...+.....+.
T Consensus 114 ~---~~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 114 N---PLAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp C---TTTTCSSCCCSEEEECHHHHHHHH
T ss_pred c---HHHHHHHhCCeEEEcChHHHHHhh
Confidence 3 234577788888888776655443
No 61
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=67.01 E-value=26 Score=34.81 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=71.4
Q ss_pred CCCccEEEe---CCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecCC
Q 009077 38 FADRPCIIN---GPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTANP 109 (544)
Q Consensus 38 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 109 (544)
.++.+|++. +..+ -.+|.+.+...+..++. ..++.+++++...+|-+... +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 456666642 2222 56999998876655443 35788999999998866544 4557889999999888765
Q ss_pred C--CCHHHHHHHHHhcCceEEEEecchhHHH
Q 009077 110 F--YTPPEIAKQAIASKAKIIITQAVYNDKV 138 (544)
Q Consensus 110 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 138 (544)
. .++..+...++..++.+++..+.....+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4677888999999999999888765544
No 62
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=66.25 E-value=13 Score=37.83 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=71.3
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++..... | ....+|.+.+...+...+..+. ..++.++|++...++-+.. ++..+++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~-~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeC
Confidence 5788888764321 2 2346788888777766665544 4578999999999886543 446788999999999887
Q ss_pred cC-cCHHHHHHHHHhccceeccCc
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPFV 282 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~ 282 (544)
+. ...+.+...+++.++..++..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~ 165 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCI 165 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEE
T ss_pred CccCCHHHHHHHHHhcCCCEEEEe
Confidence 64 678889999999888887654
No 63
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=65.96 E-value=71 Score=32.53 Aligned_cols=100 Identities=11% Similarity=-0.035 Sum_probs=72.2
Q ss_pred CCCccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH--HH-HHHHHHhhCCeEeec
Q 009077 38 FADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF--VF-AFLGASYIGATSTTA 107 (544)
Q Consensus 38 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~-~~lA~~~~G~~~v~l 107 (544)
.|+.+|++.-.+| -.+|.+.+...+...... .++.+++++...+|-+..+ .. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3567776432222 569999888776655443 4788999999998855433 32 478888999998877
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecchhHHHHHH
Q 009077 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDL 141 (544)
Q Consensus 108 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 141 (544)
+. .+...+...++..++.++...+.....+.+.
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 65 5778888899999999999988877665543
No 64
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=65.58 E-value=12 Score=38.01 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++.... .| ....+|.+.+...+......+...+++.++|++...++-+. .++..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP--EWWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEec
Confidence 467777765421 12 12468888888777766665553337899999999988654 3446788999999999887
Q ss_pred cC-cCHHHHHHHHHhccceeccCcHHHHHHH
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVLAV 289 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~l 289 (544)
+. ...+.+...+++.++..++..+.+...+
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 130 TIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 65 6788888999998888887766554433
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=64.80 E-value=17 Score=37.76 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=71.6
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++.... .+|. ...+|.+.+...+..++..+....++.++|++...+|.+.. ++..+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEee
Confidence 467787775432 1222 24588888887777666555313578999999999986653 346788999999998876
Q ss_pred c-CcCHHHHHHHHHhccceeccCcH
Q 009077 260 Q-KFDIVKLMELVQKYKVTVAPFVP 283 (544)
Q Consensus 260 ~-~~~~~~~~~~i~~~~~t~l~~~P 283 (544)
. .+..+.+...+++.++.+++...
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 5 47888999999998888876643
No 66
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=64.57 E-value=25 Score=35.70 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=72.5
Q ss_pred cCCCccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHH--HHHHHHHhhCCeEeec
Q 009077 37 QFADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFV--FAFLGASYIGATSTTA 107 (544)
Q Consensus 37 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l 107 (544)
..|+.+|++.-.+| -.+|++.+...+..+.. ..++.++|++...+|-.-.+- ..+++++..|+..+.+
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 34677777532222 56999999887766544 457899999999988765543 2378889999999988
Q ss_pred CCCC---CHHHHHHHHHhcCceEEEEecchhHHHHH
Q 009077 108 NPFY---TPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (544)
Q Consensus 108 ~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (544)
++.. ++..+...++..++.++...+.....+.+
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 7632 56778888999999988877665555443
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=64.06 E-value=20 Score=36.29 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=71.0
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++.. .-.+|.+.+...+......+. ..++.++|++...++-+. .+...+++++..|+..+..
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSI--DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEEe
Confidence 4677776642 135788888776666555443 347889999999888654 3446788999999999887
Q ss_pred cC-cCHHHHHHHHHhccceeccCcHHHHHH
Q 009077 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVLA 288 (544)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~ 288 (544)
+. ...+.+...+++.++..++..+.+...
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 65 678889999999999998877655443
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=63.23 E-value=42 Score=31.19 Aligned_cols=91 Identities=14% Similarity=-0.017 Sum_probs=59.5
Q ss_pred ccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHH
Q 009077 41 RPCIINGPTGDVYTYADVELTSRKVAAGLSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQ 119 (544)
Q Consensus 41 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 119 (544)
++.+-..+.+.+-++++- .+..+...+.+.| +++|+.|.+....+=.-..+.++|.+.|..++.+-|...+..-...
T Consensus 36 ~i~~K~E~~~ptGSfK~R--~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 113 (334)
T 3tbh_A 36 KVVLKMECENPMASVKDR--LGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCL 113 (334)
T ss_dssp EEEEEEGGGSTTSBTHHH--HHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEeCCCCCccCcHHH--HHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH
Confidence 344443322334456553 2222223344455 4889887555566667788888899999988877776666666778
Q ss_pred HHhcCceEEEEecc
Q 009077 120 AIASKAKIIITQAV 133 (544)
Q Consensus 120 l~~~~~~~vi~~~~ 133 (544)
++..++++++++..
T Consensus 114 ~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 114 LRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEECCC
Confidence 88999999999764
No 69
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=62.45 E-value=41 Score=33.94 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=72.3
Q ss_pred cCCCccEEEeCCC-------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc-cHHHHHHHHHhhCCeEeecC
Q 009077 37 QFADRPCIINGPT-------GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP-QFVFAFLGASYIGATSTTAN 108 (544)
Q Consensus 37 ~~p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~ 108 (544)
..|+.+|++.-.+ +-.+|.+.+...... ....++.+++++..++|-+. -....+++++..|+..+..+
T Consensus 211 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 286 (570)
T 4gr5_A 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQS 286 (570)
T ss_dssp CCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECS
T ss_pred CCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 3567777754332 256899887543221 22357889999999888754 34566788899999888876
Q ss_pred C-CCCHHHHHHHHHhcCceEEEEecchhHHHHH
Q 009077 109 P-FYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (544)
Q Consensus 109 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (544)
. ..++..+...+++.++.++...+.....+.+
T Consensus 287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 4 4578889999999999999998887766554
No 70
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=62.39 E-value=38 Score=34.69 Aligned_cols=114 Identities=18% Similarity=0.099 Sum_probs=78.9
Q ss_pred CCCccEEE---eCCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecC-
Q 009077 38 FADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTAN- 108 (544)
Q Consensus 38 ~p~~~a~~---~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~- 108 (544)
.|+.+|++ .+..| -.+|.+.+...+. .....++.+++++...++-+-+. +..+++.+..|+.++..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 36777764 23333 5689988754332 22335789999999998877654 445788899999888764
Q ss_pred CCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhh--cCcEEEEeCCC
Q 009077 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEH--HGARIVTIDPP 155 (544)
Q Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~v~~~~~ 155 (544)
...++..+...++..++..+...+.....+.+.... ...+.+.+.+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 346788999999999999999988877766543322 24566666543
No 71
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=59.68 E-value=22 Score=36.74 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEc
Q 009077 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (544)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 259 (544)
.|+.++++.... .+| ....+|.+.+...+..+...+. ..++.++|++...+|-+.. +...+++++..|+..+..
T Consensus 89 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e--~vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPE--AAVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHcCcEEEec
Confidence 357777765322 122 2246888888777776665544 4578999999999987653 346788999999998876
Q ss_pred c-CcCHHHHHHHHHhccceeccCc
Q 009077 260 Q-KFDIVKLMELVQKYKVTVAPFV 282 (544)
Q Consensus 260 ~-~~~~~~~~~~i~~~~~t~l~~~ 282 (544)
+ .+..+.+...+++.++.+++..
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~ 186 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITA 186 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEc
Confidence 5 4788899999998888877654
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=59.55 E-value=22 Score=38.81 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=72.5
Q ss_pred CCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEE
Q 009077 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (544)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~ 258 (544)
..|+.++++...+| ..+|.+.+...+..+...+. ..++.++|++...++-+. .++..+++++..|+..+.
T Consensus 73 ~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~ns~--e~~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 73 EFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFH-KLGVNQNDVVMLLLPNCP--EFVLSFLAASFRGATATA 142 (979)
T ss_dssp GTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECSSCH--HHHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEeCCCH--HHHHHHHHHHHcCCEEEe
Confidence 35788887754322 35788888777766665544 357899999999988654 344678899999999888
Q ss_pred ccC-cCHHHHHHHHHhccceeccCcHHH
Q 009077 259 MQK-FDIVKLMELVQKYKVTVAPFVPPI 285 (544)
Q Consensus 259 ~~~-~~~~~~~~~i~~~~~t~l~~~P~~ 285 (544)
.+. ..++.+...+++.++.+++..+.+
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 764 688899999999999888776543
No 73
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=55.53 E-value=21 Score=35.50 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=62.8
Q ss_pred hhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEccC-cCHHHHHHHHHhccceec
Q 009077 201 MLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-FDIVKLMELVQKYKVTVA 279 (544)
Q Consensus 201 ~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l 279 (544)
.+|.+.+...+......+. ..++.++|++...++-+. .++..+++++..|+..+..+. ...+.+...+++.++..+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEKSV--EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 5788888777766665444 347899999999988654 344678899999999988765 678889999999998888
Q ss_pred cCcHH
Q 009077 280 PFVPP 284 (544)
Q Consensus 280 ~~~P~ 284 (544)
+..+.
T Consensus 105 i~~~~ 109 (503)
T 4fuq_A 105 VCDPS 109 (503)
T ss_dssp EECGG
T ss_pred EECch
Confidence 76654
No 74
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=54.09 E-value=89 Score=30.81 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=69.6
Q ss_pred cCCCccEEEe---CCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc--HHHHHHHHHhhCCeEeec
Q 009077 37 QFADRPCIIN---GPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ--FVFAFLGASYIGATSTTA 107 (544)
Q Consensus 37 ~~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l 107 (544)
..|+.+|++. +..+ -.+|.+.+...+..++..+ ++.++|++...+|-.-. ++..+++.+..|+.++..
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 3456666643 2222 5699999988877666544 78899998887775432 233578889999998877
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecchhHHHHH
Q 009077 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (544)
Q Consensus 108 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (544)
+. .+...+...+ ..++..++..+.....+.+
T Consensus 229 ~~-~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 GR-FSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp SS-CCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 54 6677777777 6789999988877665544
No 75
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=53.65 E-value=1.1e+02 Score=26.26 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=55.3
Q ss_pred CeEEEEecc-hhhHHhhHHHHHHHHHhCcEEEEcc-CcCHHHHHHHHHhccceeccC------cHHH--HHHHHhcCCCC
Q 009077 227 EDVILCVLP-LFHIYSLNSVLLCALRVGAAILIMQ-KFDIVKLMELVQKYKVTVAPF------VPPI--VLAVAKSGDVD 296 (544)
Q Consensus 227 ~~~~~~~~p-~~~~~g~~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~------~P~~--l~~l~~~~~~~ 296 (544)
+.+++...+ =.|..|....-...-..|..++... ...++.+.+.+.+++++++.. +++. +..+.+..+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 445554444 3677777555555556677766654 468999999999999987555 2222 23333222221
Q ss_pred CCCCCCceEEEEecccCCHHHHHHH
Q 009077 297 KYDMSSIRTVMSGAAPMGKELEDAV 321 (544)
Q Consensus 297 ~~~l~~l~~~~~~G~~l~~~~~~~~ 321 (544)
+ +..--.+++||.+++++..+.+
T Consensus 173 ~--~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 K--LRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp T--CGGGSEEEEESSSCCHHHHHHH
T ss_pred C--CCCCCEEEEECCCCCHHHHHHh
Confidence 1 1111248899999998755443
No 76
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=53.12 E-value=48 Score=30.92 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=58.8
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEE
Q 009077 51 DVYTYADVELTSRKVAAGLSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIII 129 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 129 (544)
.+-+|++= .....+.. +.+.| +++|.+..+....+=.-+.+.++|.+.|..++.+-|...+..-...++..++++++
T Consensus 61 ptGSfK~R-gA~~~i~~-a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~ 138 (344)
T 3vc3_A 61 PTASIADR-PAYAMITD-AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELIL 138 (344)
T ss_dssp TTSBTTHH-HHHHHHHH-HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHH-HHHHHHHH-HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEE
Confidence 44556532 11223333 34444 57887666777777788888999999999988888887778888899999999999
Q ss_pred Eecc
Q 009077 130 TQAV 133 (544)
Q Consensus 130 ~~~~ 133 (544)
++..
T Consensus 139 v~~~ 142 (344)
T 3vc3_A 139 TDPA 142 (344)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 8754
No 77
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=50.77 E-value=90 Score=28.87 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=50.5
Q ss_pred eeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEE
Q 009077 53 YTYADVELTSRKV---AAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIII 129 (544)
Q Consensus 53 ~Ty~el~~~~~~l---a~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 129 (544)
+++.+........ -+.|...++++|++|+|...-+.-.+++++|....|+.++-++. +.+. ..+++..++..++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEEE
Confidence 5666544333322 23345568999999999988777777878777777887777765 2333 4566677777776
Q ss_pred Ee
Q 009077 130 TQ 131 (544)
Q Consensus 130 ~~ 131 (544)
..
T Consensus 214 ~~ 215 (348)
T 4eez_A 214 NS 215 (348)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=42.86 E-value=1.4e+02 Score=29.46 Aligned_cols=100 Identities=10% Similarity=-0.004 Sum_probs=69.4
Q ss_pred CCCccEEEeCCCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecCC
Q 009077 38 FADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTANP 109 (544)
Q Consensus 38 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 109 (544)
.|+.+|++.-.+| -.+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.++.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 4566676532222 5699999886554433221 14678889988887766544 5567788899999888775
Q ss_pred C--CCHHHHHHHHHhcCceEEEEecchhHHH
Q 009077 110 F--YTPPEIAKQAIASKAKIIITQAVYNDKV 138 (544)
Q Consensus 110 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 138 (544)
. .+...+...+...++.++...+.....+
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 4 3677888899999999999887765543
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=42.22 E-value=39 Score=34.06 Aligned_cols=86 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred hhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEEEEccC-cC-------HHHHHHHH
Q 009077 200 VMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-FD-------IVKLMELV 271 (544)
Q Consensus 200 v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~-~~-------~~~~~~~i 271 (544)
-.+|.+.+...+......+. ..++.++|++...++-+. .++..+++++..|+..+..+. .. .+.+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLL-SLNLKKGDRVALIAETSS--EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTCCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 46788888777776665544 347899999999988654 344678899999999888754 33 57788888
Q ss_pred HhccceeccCcHHHHHH
Q 009077 272 QKYKVTVAPFVPPIVLA 288 (544)
Q Consensus 272 ~~~~~t~l~~~P~~l~~ 288 (544)
+..++..++....+...
T Consensus 125 ~~~~~~~ii~~~~~~~~ 141 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPL 141 (576)
T ss_dssp HHHCCSEEEECGGGHHH
T ss_pred HhcCCCEEEecHHHHHH
Confidence 88888888776654433
No 80
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=41.21 E-value=1.1e+02 Score=27.79 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=51.9
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEE
Q 009077 51 DVYTYADVELTSRKVAAGLSKLGV-QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIII 129 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 129 (544)
..-++++-- +..+...+.+.|. ++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++
T Consensus 42 ptgSfK~R~--a~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 118 (313)
T 2q3b_A 42 PANSVKDRI--GVAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELIL 118 (313)
T ss_dssp TTSBTHHHH--HHHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCCcHHHHH--HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 344555432 2222333344554 67777666 4555555667777889999887776665556667788889999999
Q ss_pred Eecc
Q 009077 130 TQAV 133 (544)
Q Consensus 130 ~~~~ 133 (544)
++..
T Consensus 119 ~~~~ 122 (313)
T 2q3b_A 119 TPGA 122 (313)
T ss_dssp ECGG
T ss_pred eCCC
Confidence 9863
No 81
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=40.04 E-value=1.2e+02 Score=28.03 Aligned_cols=78 Identities=8% Similarity=-0.048 Sum_probs=49.7
Q ss_pred eeHHHHHHHHHH---HHHHHHHc--CCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceE
Q 009077 53 YTYADVELTSRK---VAAGLSKL--GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKI 127 (544)
Q Consensus 53 ~Ty~el~~~~~~---la~~L~~~--g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 127 (544)
+++.+....... .-+.|.+. ++++|++|+|...-++-.+++++|-..-|+.++.++. +.+. ..+++..++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 666665433222 12334443 7899999999988666777777777665777776655 3333 34556778877
Q ss_pred EEEecc
Q 009077 128 IITQAV 133 (544)
Q Consensus 128 vi~~~~ 133 (544)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 776543
No 82
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=39.44 E-value=1.1e+02 Score=29.65 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=48.2
Q ss_pred HHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEec
Q 009077 70 SKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (544)
Q Consensus 70 ~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 132 (544)
.+.| +++|....|....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47775555555657677788888999999888777766667777888999999999975
No 83
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=38.60 E-value=1.2e+02 Score=27.88 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=45.6
Q ss_pred HHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecc
Q 009077 70 SKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (544)
Q Consensus 70 ~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 133 (544)
.+.| +++|....+....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4455 466753333455566667777888899998877766655666677888899999998754
No 84
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=38.36 E-value=87 Score=31.35 Aligned_cols=86 Identities=8% Similarity=-0.052 Sum_probs=63.7
Q ss_pred ceeeHHHHHHHHHHHHHHHHH-----cCCCCCCEEEEEcCCCccH-HHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcC
Q 009077 51 DVYTYADVELTSRKVAAGLSK-----LGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTANPFYTPPEIAKQAIASK 124 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~-----~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 124 (544)
-.+|++.+...+..++..+.. ..+...+++..+.+...+. +..++.++..|+..+........+.+...++..+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 469999999888887776652 4577888888888776654 4446778889998887655434456778888999
Q ss_pred ceEEEEecchhH
Q 009077 125 AKIIITQAVYND 136 (544)
Q Consensus 125 ~~~vi~~~~~~~ 136 (544)
+.++...+....
T Consensus 273 ~t~~~~~P~~l~ 284 (562)
T 3ite_A 273 VTHAGIVPSLLD 284 (562)
T ss_dssp CCEEEECHHHHH
T ss_pred CCEEEcCHHHHh
Confidence 999988776443
No 85
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=37.58 E-value=1.9e+02 Score=26.79 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC-------CCHHHHHHHHHhcCceEEEEe
Q 009077 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF-------YTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 74 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 131 (544)
.++||.|.+..+... ....++...|+.++.++.. .+.+.+...++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYN---MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCH---HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcH---HHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 357787766544333 2334556677777666542 567777777765566766543
No 86
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=37.01 E-value=1.2e+02 Score=27.52 Aligned_cols=90 Identities=14% Similarity=-0.004 Sum_probs=54.4
Q ss_pred ccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHH
Q 009077 41 RPCIINGPTGDVYTYADVELTSRKVAAGLSKLGV-QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQ 119 (544)
Q Consensus 41 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 119 (544)
++.+-..+.+..-++++--. ..+...+.+.|. ++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-...
T Consensus 30 ~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~ 106 (308)
T 2egu_A 30 DVYLKLEFMNPGSSVKDRIA--LAMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNL 106 (308)
T ss_dssp EEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHH
T ss_pred EEEEEecccCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 34443332233445554322 222233344454 67776665 444555566777788899988776665555666677
Q ss_pred HHhcCceEEEEecc
Q 009077 120 AIASKAKIIITQAV 133 (544)
Q Consensus 120 l~~~~~~~vi~~~~ 133 (544)
++..++++++++..
T Consensus 107 ~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 107 LRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHcCCEEEEECCC
Confidence 88899999999864
No 87
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=36.90 E-value=2.3e+02 Score=25.56 Aligned_cols=64 Identities=17% Similarity=0.085 Sum_probs=44.4
Q ss_pred HHHcC-CCCCC--EEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecc
Q 009077 69 LSKLG-VQKGD--VIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (544)
Q Consensus 69 L~~~g-~~~g~--~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 133 (544)
+.+.| +++|+ .|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 46676 5544 44455556667778899998777666555566677888899999998865
No 88
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=36.69 E-value=1.3e+02 Score=28.04 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=42.6
Q ss_pred HHHH--cCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEec
Q 009077 68 GLSK--LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (544)
Q Consensus 68 ~L~~--~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 132 (544)
.|.+ .++++|++|+|...-++-.+++++|-...|+.++-++. +.+.+ ..++..++..++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 3445 68999999999998667777777776544887666654 33443 345567887777543
No 89
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=35.42 E-value=1.1e+02 Score=34.61 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=78.8
Q ss_pred CCCccEEEe---CCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHH-HHHHHHHhhCCeEeecCC
Q 009077 38 FADRPCIIN---GPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFV-FAFLGASYIGATSTTANP 109 (544)
Q Consensus 38 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~-~~~lA~~~~G~~~v~l~~ 109 (544)
.|+.+|++. +..| -.+|.+.+... .......++.+++++..+.+-+.+.. .-+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 467777642 2222 46899887642 12222357889999999888777654 457888999999888876
Q ss_pred C--CCHHHHHHHHHhcCceEEEEecchhHHHHHHHh--hcCcEEEEeCCC
Q 009077 110 F--YTPPEIAKQAIASKAKIIITQAVYNDKVRDLSE--HHGARIVTIDPP 155 (544)
Q Consensus 110 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~v~~~~~ 155 (544)
. .++..+...+...++.++...+.....+.+... ....+.+.+.+.
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 3 578899999999999999998887766654321 125566666543
No 90
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=35.30 E-value=87 Score=29.12 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=40.3
Q ss_pred HHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 69 LSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 69 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
+...++++|++|+|...-++-.+++++|- ..|+ .++.++. +.+. ..+++..++..++..
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 159 AELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGS--RKHC-CDIALEYGATDIINY 218 (352)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECC--CHHH-HHHHHHHTCCEEECG
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECC--CHHH-HHHHHHhCCceEEcC
Confidence 45568999999999987556666666665 5687 5666665 2333 356666778776653
No 91
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=35.18 E-value=1.3e+02 Score=27.90 Aligned_cols=89 Identities=15% Similarity=-0.003 Sum_probs=54.5
Q ss_pred cEEEeCCCCceeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHH
Q 009077 42 PCIINGPTGDVYTYADVELTSRKVAAGLSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQA 120 (544)
Q Consensus 42 ~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 120 (544)
+.+-..+.+.+-++++-- +..+...+.+.| +++|+.|..... +=.-..+.++|.+.|..++.+-|...+..-...+
T Consensus 44 v~~K~E~~~ptGSfKdR~--a~~~l~~a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~ 120 (343)
T 2pqm_A 44 ILVKLEYFNPMSSVKDRV--GFNIVYQAIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIM 120 (343)
T ss_dssp EEEEEGGGSTTSBTHHHH--HHHHHHHHHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHH
T ss_pred EEEEeccCCCCCChHHHH--HHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH
Confidence 444333223445555442 222222333445 477777666654 5455666677888998877776665566667788
Q ss_pred HhcCceEEEEecc
Q 009077 121 IASKAKIIITQAV 133 (544)
Q Consensus 121 ~~~~~~~vi~~~~ 133 (544)
+..++++++++..
T Consensus 121 ~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 121 KAFGAELILTEGK 133 (343)
T ss_dssp HHTTCEEEEECGG
T ss_pred HHCCCEEEEECCC
Confidence 8899999999863
No 92
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=34.62 E-value=93 Score=29.26 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=46.6
Q ss_pred HHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC-----CCHHHHHHHHHhcC--ceEEEEecc-----hh
Q 009077 68 GLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF-----YTPPEIAKQAIASK--AKIIITQAV-----YN 135 (544)
Q Consensus 68 ~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~~~~-----~~ 135 (544)
.|...++++||.|.+-.+.... ..-++...|+.++.++.. .+.+.+...+...+ .++|+.... ..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~~~G~~~~~ 145 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYATFGSWMNL 145 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBCGGGBCCCC
T ss_pred HHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEECCCCCccCH
Confidence 3445578899999887665443 344567789887766532 36778888774334 677764332 23
Q ss_pred HHHHHHHhhcCcE
Q 009077 136 DKVRDLSEHHGAR 148 (544)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (544)
..+.++.. .+..
T Consensus 146 ~~i~~la~-~~~~ 157 (377)
T 3ju7_A 146 EEYEELEK-KGVP 157 (377)
T ss_dssp HHHHHHHH-TTCC
T ss_pred HHHHHHHh-cCCE
Confidence 44555555 4433
No 93
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=33.10 E-value=2.3e+02 Score=27.15 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=38.2
Q ss_pred CCCCCEEEEEcCCCccHHHHHH---------HHHhhCCeEeecCCC----CCHHHHHHHHHh-cCceEEEEec
Q 009077 74 VQKGDVIMLLLQNCPQFVFAFL---------GASYIGATSTTANPF----YTPPEIAKQAIA-SKAKIIITQA 132 (544)
Q Consensus 74 ~~~g~~V~i~~~~~~~~~~~~l---------A~~~~G~~~v~l~~~----~~~~~l~~~l~~-~~~~~vi~~~ 132 (544)
+++||.|.+...+.......++ .+...|+.++.++.. .+.+.+...++. .++++|++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 5789998776512333222222 244568888877763 567888888875 5778888766
No 94
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=32.90 E-value=2.6e+02 Score=26.76 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=41.2
Q ss_pred HHHHcCCCCCCEEEEEcCCCccHHHHHH---------HHHhhCCeEeecCC---CCCHHHHHHHHHh-cCceEEEEec
Q 009077 68 GLSKLGVQKGDVIMLLLQNCPQFVFAFL---------GASYIGATSTTANP---FYTPPEIAKQAIA-SKAKIIITQA 132 (544)
Q Consensus 68 ~L~~~g~~~g~~V~i~~~~~~~~~~~~l---------A~~~~G~~~v~l~~---~~~~~~l~~~l~~-~~~~~vi~~~ 132 (544)
.|... +++||.|.+...+.......++ .+...|+.++.++. ..+.+.+...++. .++++|++..
T Consensus 108 al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 108 ALFGN-LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp HHHHT-CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred HHHHh-cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 34443 6899999877623333332333 23457888887765 2567888888875 5788888876
No 95
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=31.60 E-value=3e+02 Score=25.57 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC-----CCHHHHHHHHHhcCceEEEEec-----chhHHHHHHH
Q 009077 73 GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF-----YTPPEIAKQAIASKAKIIITQA-----VYNDKVRDLS 142 (544)
Q Consensus 73 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~~-----~~~~~~~~~~ 142 (544)
++++|+.|.+..+.... ...++...|+.++.++.. .+.+.+...++. +.++|+... .....+.++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWST---TYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTVNLLGNPNNFDEINKII 151 (390)
T ss_dssp SCCTTCEEEEESSSCHH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEECGGGCCCCHHHHHHHH
T ss_pred CCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEECCccChhhHHHHHHHH
Confidence 67899998877665433 334566788876655432 256777777654 566666532 2234455554
Q ss_pred hhcCc
Q 009077 143 EHHGA 147 (544)
Q Consensus 143 ~~~~~ 147 (544)
...+.
T Consensus 152 ~~~~~ 156 (390)
T 3b8x_A 152 GGRDI 156 (390)
T ss_dssp TTSCC
T ss_pred HHcCC
Confidence 44343
No 96
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=31.31 E-value=2.9e+02 Score=26.41 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=36.2
Q ss_pred EEEcCCCccHHH-HHHHHHhhCCeEeecCCCCCHH--HHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeC
Q 009077 81 MLLLQNCPQFVF-AFLGASYIGATSTTANPFYTPP--EIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTID 153 (544)
Q Consensus 81 ~i~~~~~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~ 153 (544)
+++..++.+.+. ++.++++.|-.++..++.+... .+...+...+.+++.++....+.+.+.... +.+.+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEE
Confidence 455555655543 3334555665555556655332 222255667777777765544444433321 34555543
No 97
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=30.96 E-value=2.1e+02 Score=25.89 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=45.4
Q ss_pred HHHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEec
Q 009077 69 LSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (544)
Q Consensus 69 L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 132 (544)
+.+.| +++|+.|..... +=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 52 a~~~g~~~~g~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCCCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 33445 367777766653 5455666777889999888777766566667788889999999985
No 98
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=30.86 E-value=1.1e+02 Score=27.71 Aligned_cols=98 Identities=10% Similarity=0.146 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHH---HHHhcCceEEE
Q 009077 55 YADVELTSRKVAAGLSKL--GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAK---QAIASKAKIII 129 (544)
Q Consensus 55 y~el~~~~~~la~~L~~~--g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~---~l~~~~~~~vi 129 (544)
+..+.++...+-..+++. .+ ++.. .+...+...++.-.|++-.+|..- .....++.++.. .++..+.++||
T Consensus 167 ~~~~~~~L~~Ld~~~~~~l~~~-~~~~-~v~~H~af~Yf~~~yGl~~~~~~~--~~~eps~~~l~~l~~~ik~~~v~~If 242 (291)
T 1pq4_A 167 LAAFLAELERLNQELGQILQPL-PQRK-FIVFHPSWAYFARDYNLVQIPIEV--EGQEPSAQELKQLIDTAKENNLTMVF 242 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SCCE-EEESSCCCHHHHHHTTCEEEESCB--TTBCCCHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCE-EEEECCchHHHHHHCCCEEeeccc--CCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 333444444444444432 22 3444 555666777777777666554332 122335655554 45668999999
Q ss_pred EecchhHHHHHH-HhhcCcEEEEeCCCC
Q 009077 130 TQAVYNDKVRDL-SEHHGARIVTIDPPP 156 (544)
Q Consensus 130 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 156 (544)
+.+...+...+. +...+.+++.+++..
T Consensus 243 ~e~~~~~~~~~~ia~~~g~~v~~ld~l~ 270 (291)
T 1pq4_A 243 GETQFSTKSSEAIAAEIGAGVELLDPLA 270 (291)
T ss_dssp EETTSCCHHHHHHHHHHTCEEEEECTTC
T ss_pred EeCCCChHHHHHHHHHcCCeEEEEcCch
Confidence 988776655444 455578887776543
No 99
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=30.68 E-value=1.1e+02 Score=28.18 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=48.1
Q ss_pred eeeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEE
Q 009077 52 VYTYADVELTSRK---VAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKII 128 (544)
Q Consensus 52 ~~Ty~el~~~~~~---la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 128 (544)
.+++.+....... .-+.|...++++|++|+|...-++-.+++++|-. .|+.++.++. +.+.+. .++..++..+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKLN-LARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHHH-HHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHHH-HHHHcCCCEE
Confidence 4666665432221 1234445689999999999876667777777764 5887776655 344433 5566777776
Q ss_pred EEe
Q 009077 129 ITQ 131 (544)
Q Consensus 129 i~~ 131 (544)
+..
T Consensus 215 i~~ 217 (340)
T 3s2e_A 215 VNA 217 (340)
T ss_dssp EET
T ss_pred EeC
Confidence 654
No 100
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=30.43 E-value=1.5e+02 Score=29.44 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=46.4
Q ss_pred HcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEec
Q 009077 71 KLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (544)
Q Consensus 71 ~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 132 (544)
+.| +++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++.++++..
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 578888765 4555556777788999999988777766666777888999999999865
No 101
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=30.02 E-value=1.4e+02 Score=28.20 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceE
Q 009077 69 LSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKI 127 (544)
Q Consensus 69 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 127 (544)
|...++++|++|+|...-++-.+++++|-. .|+ .++.++. +.+.+ .+++..++.+
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~-~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~ 233 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASARL-LGAAVVIVGDL--NPARL-AHAKAQGFEI 233 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEES--CHHHH-HHHHHTTCEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHHH-CCCCeEEEEcC--CHHHH-HHHHHcCCcE
Confidence 345689999999999865566777777664 587 4555554 33433 4456677763
No 102
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=28.59 E-value=1.4e+02 Score=20.47 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=34.1
Q ss_pred cHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcccCCC
Q 009077 450 PAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYK 509 (544)
Q Consensus 450 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~ 509 (544)
..++++.|.+.|+|.+|..+.-. .+. ++.+.. .+.+++.+.+.+.+....
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~----~D~-ll~v~~-----~d~~~l~~~i~~~l~~~~ 64 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE----YDL-IVKVET-----DTLKDLDQFITEKIRKMP 64 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS----CSE-EEEEEE-----SSHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHhCCCCeeEEEEEccc----CCE-EEEEEE-----CCHHHHHHHHHHHhccCC
Confidence 47889999999999999887522 223 333333 367888888876665543
No 103
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=28.36 E-value=1e+02 Score=28.74 Aligned_cols=59 Identities=14% Similarity=0.005 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchh
Q 009077 76 KGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN 135 (544)
Q Consensus 76 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 135 (544)
+.+.|... ..+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++....
T Consensus 75 ~~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 75 KPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp CCSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 33444443 445556777788999999887777766666677888999999999987643
No 104
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=28.33 E-value=1.2e+02 Score=27.22 Aligned_cols=95 Identities=13% Similarity=0.229 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC--CCHHHH---HHHHHhcCceE
Q 009077 55 YADVELTSRKVAAGLSKL--GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF--YTPPEI---AKQAIASKAKI 127 (544)
Q Consensus 55 y~el~~~~~~la~~L~~~--g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--~~~~~l---~~~l~~~~~~~ 127 (544)
++++..+...+-..+++. .+ ++..+.+ ..+...++.-.|++-.+|. .-+++. .++.++ ...++..+.++
T Consensus 156 ~~~~~~~L~~Ld~~~~~~l~~~-~~~~~v~-~H~af~Yf~~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 156 AKAFKKEAEQLTEEYTQKFKKV-RSKTFVT-QHTAFSYLAKRFGLKQLGI--SGISPEQEPSPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SCCEEEE-EESCCHHHHHHTTCEEEEE--ECSCC---CCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCEEEE-ECCchHHHHHHCCCeEeec--cccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344444444454444442 22 4555544 4457777776666554442 123332 244444 45566789999
Q ss_pred EEEecchhHHHHHH-HhhcCcEEEEeC
Q 009077 128 IITQAVYNDKVRDL-SEHHGARIVTID 153 (544)
Q Consensus 128 vi~~~~~~~~~~~~-~~~~~~~~v~~~ 153 (544)
||+.+...+...+. +...+.+++.++
T Consensus 232 if~e~~~~~~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 232 IFAEDNVNPKIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp EEECTTSCTHHHHHHHHTTTCEEEECC
T ss_pred EEEeCCCChHHHHHHHHHhCCeEEEec
Confidence 99998876555443 445577776664
No 105
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=28.26 E-value=42 Score=29.93 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCC
Q 009077 63 RKVAAGLSKLGVQKGDVIMLLLQNC 87 (544)
Q Consensus 63 ~~la~~L~~~g~~~g~~V~i~~~~~ 87 (544)
..|.+.|+++|+++||.|.|..+=+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567889999999999999998743
No 106
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=26.77 E-value=2.1e+02 Score=26.17 Aligned_cols=64 Identities=19% Similarity=0.077 Sum_probs=47.0
Q ss_pred HHHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecc
Q 009077 69 LSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (544)
Q Consensus 69 L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 133 (544)
+.+.| +++++.|... ..+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 4777877665 4455667777888999998887777666666677888999999999853
No 107
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=26.62 E-value=2.1e+02 Score=26.53 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=39.4
Q ss_pred HHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 69 LSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 69 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
|...++++|++|+|...-++-.+++++|-. .|+ .++.++. +.+. ..+++..++..++..
T Consensus 164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~~ 223 (356)
T 1pl8_A 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDL--SATR-LSKAKEIGADLVLQI 223 (356)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEES--CHHH-HHHHHHTTCSEEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECC--CHHH-HHHHHHhCCCEEEcC
Confidence 344589999999999875567777777764 587 6666654 2333 344566777766653
No 108
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.60 E-value=1.2e+02 Score=20.98 Aligned_cols=46 Identities=17% Similarity=-0.023 Sum_probs=30.3
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCe
Q 009077 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103 (544)
Q Consensus 51 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 103 (544)
..+.+.++.+ .+.+.+..++..|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4456666543 344446677888888888877766666666677753
No 109
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.28 E-value=4e+02 Score=24.77 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=48.6
Q ss_pred HHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC----CCHHHHHHHHHhc--CceEEEEecc-----hhHH
Q 009077 69 LSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF----YTPPEIAKQAIAS--KAKIIITQAV-----YNDK 137 (544)
Q Consensus 69 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~~~-----~~~~ 137 (544)
+...++++||.|.+..+....... ++...|+.++.++.. .+.+.+...++.. ++++|+.... ....
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~ 140 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDE 140 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHH
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEECCCCChhhHHH
Confidence 333457899999888776665543 344578877666542 3667888888764 5666665432 2344
Q ss_pred HHHHHhhcCcEEEEeCC
Q 009077 138 VRDLSEHHGARIVTIDP 154 (544)
Q Consensus 138 ~~~~~~~~~~~~v~~~~ 154 (544)
+.++....+.. +++|.
T Consensus 141 i~~l~~~~~~~-li~De 156 (394)
T 1o69_A 141 IVEICKENDIV-LIEDA 156 (394)
T ss_dssp HHHHHHHTTCE-EEEEC
T ss_pred HHHHHHHcCCE-EEEEC
Confidence 55555444433 34443
No 110
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=25.86 E-value=49 Score=29.76 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.8
Q ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Q 009077 50 GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNC 87 (544)
Q Consensus 50 ~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~ 87 (544)
+..+|-.+| .+.|+++|+++||.|.|..+=+
T Consensus 19 ~~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 19 RELVTRDRL-------ASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CCEECHHHH-------HHHHHHHTCCTTCEEEEEECST
T ss_pred CCCcCHHHH-------HHHHHHcCCCCCCEEEEEechH
Confidence 456777665 5689999999999999998743
No 111
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=25.56 E-value=1.8e+02 Score=27.28 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHcC-CCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 69 LSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 69 L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
|...+ +++|++|+|...-++-.+++++|-. .|+ .++.+.. +.+. ...++..++..++..
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 247 (380)
T 1vj0_A 187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARS-LGAENVIVIAG--SPNR-LKLAEEIGADLTLNR 247 (380)
T ss_dssp HHTCSSCCBTCEEEEECCSHHHHHHHHHHHH-TTBSEEEEEES--CHHH-HHHHHHTTCSEEEET
T ss_pred HHhcCCCCCCCEEEEECcCHHHHHHHHHHHH-cCCceEEEEcC--CHHH-HHHHHHcCCcEEEec
Confidence 34457 8999999999965566777777654 584 6665554 3343 344557788777654
No 112
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=25.55 E-value=50 Score=29.60 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCC
Q 009077 64 KVAAGLSKLGVQKGDVIMLLLQNC 87 (544)
Q Consensus 64 ~la~~L~~~g~~~g~~V~i~~~~~ 87 (544)
.|...|+++|+++||.|.|..+=+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 356789999999999999998743
No 113
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=25.38 E-value=1.5e+02 Score=28.22 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 73 GVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 73 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
++++|++|+|...-++-.+++++|- ..|+ .++.++. +.+. ..+++..++..++..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILK-HAGASKVILSEP--SEVR-RNLAKELGADHVIDP 265 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEECT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEcC
Confidence 6899999999987556667777765 5688 6666664 2333 345566777776643
No 114
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=25.26 E-value=1.5e+02 Score=27.38 Aligned_cols=74 Identities=12% Similarity=-0.076 Sum_probs=45.1
Q ss_pred eeeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEE
Q 009077 52 VYTYADVELTSRKV---AAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKII 128 (544)
Q Consensus 52 ~~Ty~el~~~~~~l---a~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 128 (544)
.+++.+........ -+.|...++++|++|+|...-++-.+++++|- ..|+.++.++.+- +.+ ..++..++..+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKK-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTH-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHH-HHHHhcCCCee
Confidence 36666654222111 23455568999999999987556667777765 4688777666532 222 24455667666
Q ss_pred E
Q 009077 129 I 129 (544)
Q Consensus 129 i 129 (544)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 6
No 115
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=25.13 E-value=4.1e+02 Score=24.70 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC----CCHHHHHHHHHhcCceEEEEecc----
Q 009077 62 SRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF----YTPPEIAKQAIASKAKIIITQAV---- 133 (544)
Q Consensus 62 ~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~~~---- 133 (544)
+..+...+... +++||.|.+..+...... ..-++...|+.++.++.. .+.+.+...++..++++++....
T Consensus 72 t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 149 (416)
T 3isl_A 72 RAGIEAVLASV-IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETST 149 (416)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHHHHHHHHh-cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCC
Q ss_pred ----hhHHHHHHHhhcCcEEEE
Q 009077 134 ----YNDKVRDLSEHHGARIVT 151 (544)
Q Consensus 134 ----~~~~~~~~~~~~~~~~v~ 151 (544)
....+.++....+..+++
T Consensus 150 G~~~~l~~i~~l~~~~~~~li~ 171 (416)
T 3isl_A 150 GRIHPLKAIGEACRTEDALFIV 171 (416)
T ss_dssp TEECCCHHHHHHHHHTTCEEEE
T ss_pred ceecCHHHHHHHHHHcCCEEEE
No 116
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=24.74 E-value=3.9e+02 Score=24.13 Aligned_cols=91 Identities=13% Similarity=-0.010 Sum_probs=56.6
Q ss_pred CccEEEeCCCCceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHH
Q 009077 40 DRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGV-QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAK 118 (544)
Q Consensus 40 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 118 (544)
.++.+-....+.+-++++--. ..+...+.+.|. ++|+.|.... .+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG--ANMVWQAEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH--HHHHHHHHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345554443344455555432 222233344554 6676665543 455556677788899998777666555566677
Q ss_pred HHHhcCceEEEEecc
Q 009077 119 QAIASKAKIIITQAV 133 (544)
Q Consensus 119 ~l~~~~~~~vi~~~~ 133 (544)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 888899999998864
No 117
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=24.36 E-value=2.1e+02 Score=27.04 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=36.4
Q ss_pred HHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCce
Q 009077 69 LSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAK 126 (544)
Q Consensus 69 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 126 (544)
|...++++|++|+|...-++-.+++++|-. .|+ .++-++. +.+.+ ..++..++.
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~--~~~~~-~~a~~lGa~ 232 (398)
T 2dph_A 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARL-LGAACVIVGDQ--NPERL-KLLSDAGFE 232 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEEES--CHHHH-HHHHTTTCE
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcC--CHHHH-HHHHHcCCc
Confidence 445689999999999875557777777764 587 6665654 33443 445566775
No 118
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=24.35 E-value=1.1e+02 Score=28.60 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=40.4
Q ss_pred HHHHcCCC-CCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEec
Q 009077 68 GLSKLGVQ-KGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (544)
Q Consensus 68 ~L~~~g~~-~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 132 (544)
.|...+++ +|++|+|...-++-.+++++|-. .|+.++-++.+ .+.+....+..++..++...
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~ 233 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGS 233 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeeccc
Confidence 34556888 99999999876667777777664 58776655543 33444444466776666543
No 119
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=24.12 E-value=3e+02 Score=25.17 Aligned_cols=11 Identities=0% Similarity=-0.161 Sum_probs=5.3
Q ss_pred HhcCceEEEEe
Q 009077 121 IASKAKIIITQ 131 (544)
Q Consensus 121 ~~~~~~~vi~~ 131 (544)
...+++++.+.
T Consensus 109 ~~~g~~~~~v~ 119 (382)
T 4hvk_A 109 QKQGFEVEYIP 119 (382)
T ss_dssp HHTTCEEEEEC
T ss_pred HhcCCEEEEec
Confidence 34455555543
No 120
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=23.87 E-value=3.7e+02 Score=24.38 Aligned_cols=71 Identities=13% Similarity=-0.006 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHhh----C---CeEeecCCCCCH------HHHHHHHHhcCce
Q 009077 61 TSRKVAAGLSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYI----G---ATSTTANPFYTP------PEIAKQAIASKAK 126 (544)
Q Consensus 61 ~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~----G---~~~v~l~~~~~~------~~l~~~l~~~~~~ 126 (544)
...++...+.+.+ +.++++|+|.++-+.|.++++..+.+. | ..++.++..+.. +.+..+.+..+..
T Consensus 7 ~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~ 86 (317)
T 1wy5_A 7 VIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMK 86 (317)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCc
Confidence 3456677777654 578999999999999999988887764 4 446677776641 2233444555655
Q ss_pred EEEEe
Q 009077 127 IIITQ 131 (544)
Q Consensus 127 ~vi~~ 131 (544)
+.+..
T Consensus 87 ~~v~~ 91 (317)
T 1wy5_A 87 IFVGK 91 (317)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 121
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=23.81 E-value=3.6e+02 Score=25.15 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEec
Q 009077 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (544)
Q Consensus 74 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 132 (544)
.++||.|.+-.+. +....-++...|+.+++++. .+.+.+...+...+++++++..
T Consensus 140 ~~~gd~Vl~~~~~---~~~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFFA---HMSLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETTS---CHHHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCCc---CHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 3567777654433 23334455566777776654 4566677777665556666543
No 122
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=23.26 E-value=4.1e+02 Score=23.83 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=41.5
Q ss_pred HHHcCC-CCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecc
Q 009077 69 LSKLGV-QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (544)
Q Consensus 69 L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 133 (544)
+.+.|. +++ |. -...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~~--vv-~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 58 AEKRGLLKNG--IV-EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp HHHTTCCTTC--EE-EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCC--EE-EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334454 344 32 344454556667778899988777666555566677888899999998764
No 123
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=22.74 E-value=2.6e+02 Score=27.15 Aligned_cols=69 Identities=9% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHh----hC--CeEeecCCCCC-H------HHHHHHHHhcCceEEE
Q 009077 64 KVAAGLSKLG-VQKGDVIMLLLQNCPQFVFAFLGASY----IG--ATSTTANPFYT-P------PEIAKQAIASKAKIII 129 (544)
Q Consensus 64 ~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~vi 129 (544)
++.+.+.+.+ +.++++|+|.++-+.|.++++..+.. .| ..++.++..+. . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4566677765 58899999999999999998888776 34 56778887775 2 2344556666776666
Q ss_pred Eec
Q 009077 130 TQA 132 (544)
Q Consensus 130 ~~~ 132 (544)
..-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 124
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=22.26 E-value=1.4e+02 Score=26.81 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC--CCHHHHH---HHHHhcCceEEEEecchhHHHHHH-HhhcCcEEE
Q 009077 77 GDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF--YTPPEIA---KQAIASKAKIIITQAVYNDKVRDL-SEHHGARIV 150 (544)
Q Consensus 77 g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--~~~~~l~---~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~v 150 (544)
+..+. ...+...+++-.|++-..|.. -+++. .++.++. ..++..+.++||+.+...+...+. +...+.+++
T Consensus 174 ~~~~v-~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~ 250 (284)
T 2prs_A 174 GKGYF-VFHDAYGYFEKQFGLTPLGHF--TVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG 250 (284)
T ss_dssp TCCEE-EEESCCHHHHHHHTCCCCEEE--ESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEE
T ss_pred CCeEE-EECccHHHHHHHCCCeEeEee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEE
Confidence 44444 445578888888887765533 33332 3555544 456678999999998776554443 344466665
Q ss_pred EeC
Q 009077 151 TID 153 (544)
Q Consensus 151 ~~~ 153 (544)
.++
T Consensus 251 ~ld 253 (284)
T 2prs_A 251 TLD 253 (284)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
No 125
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=22.24 E-value=3.4e+02 Score=25.07 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=46.5
Q ss_pred eeeHHHHHHHHHHH--H-HHH-HHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceE
Q 009077 52 VYTYADVELTSRKV--A-AGL-SKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKI 127 (544)
Q Consensus 52 ~~Ty~el~~~~~~l--a-~~L-~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 127 (544)
.+++.+........ | ..| ...++++|++|+|...-++-.+++++|- ..|+.++.++. +.+.+. .++..++..
T Consensus 161 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 236 (363)
T 3uog_A 161 SLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAK-ATGAEVIVTSS--SREKLD-RAFALGADH 236 (363)
T ss_dssp TSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHHTCSE
T ss_pred CCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEec--CchhHH-HHHHcCCCE
Confidence 46777665332222 2 233 2357899999999995555666666665 57887776654 334433 356677777
Q ss_pred EEE
Q 009077 128 IIT 130 (544)
Q Consensus 128 vi~ 130 (544)
++.
T Consensus 237 vi~ 239 (363)
T 3uog_A 237 GIN 239 (363)
T ss_dssp EEE
T ss_pred EEc
Confidence 775
No 126
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.24 E-value=2.2e+02 Score=26.76 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.6
Q ss_pred cCCCCCCEEEEEcCCCc
Q 009077 72 LGVQKGDVIMLLLQNCP 88 (544)
Q Consensus 72 ~g~~~g~~V~i~~~~~~ 88 (544)
.-+++||+|+|++|.+.
T Consensus 38 ~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCTTCEEEEECSSCC
T ss_pred CCCCCcCEEEEEeCCCC
Confidence 36899999999999875
No 127
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=22.18 E-value=3.6e+02 Score=24.56 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecC--CC----CCHHHHHHHHHh----cCceEEEEe
Q 009077 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTAN--PF----YTPPEIAKQAIA----SKAKIIITQ 131 (544)
Q Consensus 74 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~vi~~ 131 (544)
+++||.|.+..+...... .++...|+.++.++ .. .+.+.+...++. .++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSY---VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHH---HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHH---HHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 356676666554433322 22455666655554 21 245566666653 244444443
No 128
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=21.99 E-value=4.3e+02 Score=24.34 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=6.0
Q ss_pred CCCCEEEEEcCC
Q 009077 75 QKGDVIMLLLQN 86 (544)
Q Consensus 75 ~~g~~V~i~~~~ 86 (544)
++||.|.+..+.
T Consensus 111 ~~gd~vl~~~~~ 122 (406)
T 1kmj_A 111 RAGDNIIISQME 122 (406)
T ss_dssp CTTCEEEEETTC
T ss_pred CCCCEEEEeccc
Confidence 455555554443
No 129
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=21.93 E-value=1.6e+02 Score=27.63 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=38.3
Q ss_pred HHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceEEEE
Q 009077 68 GLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKIIIT 130 (544)
Q Consensus 68 ~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 130 (544)
.|...++++|++|+|...-++-.+++++|- ..|+ .++.++. +.+. ..+++..++..++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 345568999999999987555666666665 5687 6666654 2333 33555566665553
No 130
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=21.83 E-value=4.5e+02 Score=24.77 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=44.5
Q ss_pred CCC-EEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhHH
Q 009077 76 KGD-VIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDK 137 (544)
Q Consensus 76 ~g~-~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 137 (544)
+++ .|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++.+++++....+.
T Consensus 110 ~~~~~vv~-aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a 171 (398)
T 4d9i_A 110 GEKMTFAT-TTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDT 171 (398)
T ss_dssp SCCCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHH
T ss_pred cCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 344 4444 555656677778899999988877776666777788899999999998755433
No 131
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=21.83 E-value=1.9e+02 Score=26.34 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=45.0
Q ss_pred eeeHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEEc-CCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceE
Q 009077 52 VYTYADVELTSRKV--A-AGLSKLGVQKGDVIMLLL-QNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKI 127 (544)
Q Consensus 52 ~~Ty~el~~~~~~l--a-~~L~~~g~~~g~~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 127 (544)
.+++.+........ | +.|...++++|++|+|.. .-++-.+++++|- ..|+.++.+. +.+. ..+++..++..
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 35666654432221 1 334456899999999996 5556666766665 5587766553 3344 45566667766
Q ss_pred EEE
Q 009077 128 IIT 130 (544)
Q Consensus 128 vi~ 130 (544)
++.
T Consensus 200 ~i~ 202 (321)
T 3tqh_A 200 CIN 202 (321)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 132
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=21.60 E-value=1.5e+02 Score=27.68 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=41.8
Q ss_pred EEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecchhH
Q 009077 81 MLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYND 136 (544)
Q Consensus 81 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 136 (544)
.|....+=.-..+.++|.+.|..++.+-|...+......++..++++++++....+
T Consensus 96 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 151 (364)
T 4h27_A 96 FVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDE 151 (364)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTH
T ss_pred EEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 33444455567777888999998887777666777788888999999999865443
No 133
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.36 E-value=2e+02 Score=19.53 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=33.2
Q ss_pred cHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcccCC
Q 009077 450 PAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFY 508 (544)
Q Consensus 450 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 508 (544)
..++.+.|.+.|+|.+|..+.-. .+ .++.+.. .+.+++.+.+.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~----~d-~l~~v~~-----~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV----YD-IVVKVEA-----DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS----CS-EEEEEEC-----SSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEecc----CC-EEEEEEE-----CCHHHHHHHHHHHhcCC
Confidence 36888999999999999887422 12 2333332 36788888887666554
No 134
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=21.32 E-value=3.4e+02 Score=26.14 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=38.2
Q ss_pred cCCCCCCEEEEEcC-CCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 72 LGVQKGDVIMLLLQ-NCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 72 ~g~~~g~~V~i~~~-~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
.++++|++|+|... -++-.+++++|- ..|+.++.+.. +.+.+. .++..++..++..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak-~~Ga~vi~~~~--~~~~~~-~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFAL-AGGANPICVVS--SPQKAE-ICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEES--SHHHHH-HHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHH-HcCCeEEEEEC--CHHHHH-HHHhhCCcEEEec
Confidence 47899999999988 445666666665 56887776653 444444 5566777777653
No 135
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=21.12 E-value=1.8e+02 Score=27.17 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHHHcCCC-CCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 68 GLSKLGVQ-KGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 68 ~L~~~g~~-~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
.|...+++ +|++|+|...-++-.+++++|- ..|+.++.++. +.+.+....+..++..++..
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~ 239 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVS 239 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEET
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEec
Confidence 34556888 9999999987556677777765 46877665554 34444444546677666543
No 136
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.06 E-value=2.7e+02 Score=21.02 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=34.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeec--CCCCCHHH
Q 009077 66 AAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTA--NPFYTPPE 115 (544)
Q Consensus 66 a~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~ 115 (544)
+.+|.+.|+.++..+.|...+..+.+.++==+++.|...+-+ -+..+...
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~ 98 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAA 98 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHH
Confidence 667777888888777777777778888888888888643322 34455444
No 137
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=21.02 E-value=3e+02 Score=25.22 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.6
Q ss_pred CCCCCCEEEEEcCCCc
Q 009077 73 GVQKGDVIMLLLQNCP 88 (544)
Q Consensus 73 g~~~g~~V~i~~~~~~ 88 (544)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPSs~ 23 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRS 23 (327)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCCCEEEEEeCCCC
Confidence 4789999999999763
No 138
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=20.90 E-value=2.1e+02 Score=26.71 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=46.2
Q ss_pred eeeHHHHHHHHHHH--HHH-H-HHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCce
Q 009077 52 VYTYADVELTSRKV--AAG-L-SKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAK 126 (544)
Q Consensus 52 ~~Ty~el~~~~~~l--a~~-L-~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 126 (544)
.+++.+.......+ |.. + ...++++|++|+|+..-++-.+++++|- ..|+ .++.++.+- +.+ .+++..++.
T Consensus 165 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~-~~Ga~~Vi~~~~~~--~~~-~~a~~lGa~ 240 (378)
T 3uko_A 165 TAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAK-TAGASRIIGIDIDS--KKY-ETAKKFGVN 240 (378)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHH-HHTCSCEEEECSCT--THH-HHHHTTTCC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCH--HHH-HHHHHcCCc
Confidence 35666654432222 221 3 3358899999999987556666666665 5687 566666532 333 356677877
Q ss_pred EEEEe
Q 009077 127 IIITQ 131 (544)
Q Consensus 127 ~vi~~ 131 (544)
.++..
T Consensus 241 ~vi~~ 245 (378)
T 3uko_A 241 EFVNP 245 (378)
T ss_dssp EEECG
T ss_pred EEEcc
Confidence 76654
No 139
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=20.88 E-value=4.4e+02 Score=24.43 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.0
Q ss_pred CcHHHHHHHHc
Q 009077 449 APAELEAMLIA 459 (544)
Q Consensus 449 ~~~~ie~~l~~ 459 (544)
..++|+.++..
T Consensus 391 t~e~i~~~~~~ 401 (406)
T 3cai_A 391 TMAEVDQLVRA 401 (406)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34455554433
No 140
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=20.76 E-value=3.2e+02 Score=25.32 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=37.5
Q ss_pred HcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 71 KLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 71 ~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
..++++|++|+|...-++-.+++++|-. .|+ .++.++. +.+. ..+++..++..++..
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~~ 242 (371)
T 1f8f_A 185 ALKVTPASSFVTWGAGAVGLSALLAAKV-CGASIIIAVDI--VESR-LELAKQLGATHVINS 242 (371)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHH-HTCSEEEEEES--CHHH-HHHHHHHTCSEEEET
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECC--CHHH-HHHHHHcCCCEEecC
Confidence 4579999999999865566777777654 577 4555554 2333 344456677766653
No 141
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=20.73 E-value=2.1e+02 Score=26.54 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=47.6
Q ss_pred eeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEcC-CCccHHHHHHHHHhhCCeE-eecCCCCCHHHHHHHHHhcCce
Q 009077 53 YTYADVELTS--RKVA-AGLSK-LGVQKGDVIMLLLQ-NCPQFVFAFLGASYIGATS-TTANPFYTPPEIAKQAIASKAK 126 (544)
Q Consensus 53 ~Ty~el~~~~--~~la-~~L~~-~g~~~g~~V~i~~~-~~~~~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~~ 126 (544)
+++.+..... --.| ..|.+ .++++|++|+|... -++-.+++++|-. .|+.. +..+..-..+.....++..++.
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5666654321 1122 23334 47999999999987 5567777777664 58754 4444443444455566778887
Q ss_pred EEEEe
Q 009077 127 IIITQ 131 (544)
Q Consensus 127 ~vi~~ 131 (544)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 77753
No 142
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=20.71 E-value=2.6e+02 Score=25.72 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=45.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC-----CCHHHHHHHHHhcCceEEEEecc-----hh
Q 009077 66 AAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF-----YTPPEIAKQAIASKAKIIITQAV-----YN 135 (544)
Q Consensus 66 a~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~~~-----~~ 135 (544)
...+...++++||.|.+..+..... ..++...|+.++.++.. .+.+.+...++. ++++++.... ..
T Consensus 65 ~~~l~~l~~~~gd~Vi~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n~~G~~~~l 140 (373)
T 3frk_A 65 HLILKGYDIGFGDEVIVPSNTFIAT---ALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVHLYGQPADM 140 (373)
T ss_dssp HHHHHHTTCCTTCEEEEETTSCTHH---HHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT-TEEEEEEECCTTCCCCH
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC-CCeEEEEECCCcCcccH
Confidence 3344455678999988876655443 34466778777666533 145556555543 5666665432 23
Q ss_pred HHHHHHHhhcCcEEE
Q 009077 136 DKVRDLSEHHGARIV 150 (544)
Q Consensus 136 ~~~~~~~~~~~~~~v 150 (544)
+.+.++....+..++
T Consensus 141 ~~i~~l~~~~~~~li 155 (373)
T 3frk_A 141 DEIKRIAKKYNLKLI 155 (373)
T ss_dssp HHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHcCCEEE
Confidence 455555555454333
No 143
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=20.69 E-value=4.9e+02 Score=23.82 Aligned_cols=45 Identities=9% Similarity=-0.090 Sum_probs=20.3
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCC--------CCHHHHHHHHHh
Q 009077 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF--------YTPPEIAKQAIA 122 (544)
Q Consensus 75 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--------~~~~~l~~~l~~ 122 (544)
++||.|.+..+.-.. ...++...|+.++.++.. .+.+.+...++.
T Consensus 112 ~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 164 (391)
T 4dq6_A 112 KANDKIMIQEPVYSP---FNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD 164 (391)
T ss_dssp CTTCEEEECSSCCTH---HHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT
T ss_pred CCCCEEEEcCCCCHH---HHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc
Confidence 455655544333222 222334455555544432 344555555544
No 144
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=20.61 E-value=2.4e+02 Score=26.24 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=37.6
Q ss_pred HcCCCCCCEEEEEcCCCccHHHHHHHHHhhCC-eEeecCCCCCHHHHHHHHHhcCceEEEEe
Q 009077 71 KLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (544)
Q Consensus 71 ~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 131 (544)
..++++|++|+|...-++-.+++++|-. .|+ .++.++.+ .+.+ .+++..++..++..
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~~--~~~~-~~a~~lGa~~vi~~ 243 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGCKA-AGASRIIGVGTH--KDKF-PKAIELGATECLNP 243 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSC--GGGH-HHHHHTTCSEEECG
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECCC--HHHH-HHHHHcCCcEEEec
Confidence 3578999999999875566777777654 587 56656542 2333 34456777766643
No 145
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=20.50 E-value=4.2e+02 Score=24.34 Aligned_cols=79 Identities=15% Similarity=0.017 Sum_probs=47.7
Q ss_pred eeeHHHHHHHH--HHHH-HHHHH-cCCCCC-CEEEEEcC-CCccHHHHHHHHHhhCCeEeecCCCCCH-HHHHHHHHhcC
Q 009077 52 VYTYADVELTS--RKVA-AGLSK-LGVQKG-DVIMLLLQ-NCPQFVFAFLGASYIGATSTTANPFYTP-PEIAKQAIASK 124 (544)
Q Consensus 52 ~~Ty~el~~~~--~~la-~~L~~-~g~~~g-~~V~i~~~-~~~~~~~~~lA~~~~G~~~v~l~~~~~~-~~l~~~l~~~~ 124 (544)
.+++.+..... -..| +.|.+ .++++| ++|+|... -++-.+++++|-. .|+.++.+...... ......++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKL-LNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHH-HTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHH-CCCEEEEEecCccccHHHHHHHHhcC
Confidence 46776654322 1122 23344 379999 99999987 5567777777764 68876555432222 33344556778
Q ss_pred ceEEEEe
Q 009077 125 AKIIITQ 131 (544)
Q Consensus 125 ~~~vi~~ 131 (544)
+..++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8877754
No 146
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=20.49 E-value=4.3e+02 Score=25.01 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=36.4
Q ss_pred CCCCCEEEEEcCCCccHHHHHH--------HHHhhCCeEeecCCC----CCHHHHHHHHHhcCceEEEEec
Q 009077 74 VQKGDVIMLLLQNCPQFVFAFL--------GASYIGATSTTANPF----YTPPEIAKQAIASKAKIIITQA 132 (544)
Q Consensus 74 ~~~g~~V~i~~~~~~~~~~~~l--------A~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~~ 132 (544)
+++||.|.+...+.......++ .+...|+.+..++.. .+.+.+...++. +.++|++..
T Consensus 98 l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~ 167 (409)
T 3jzl_A 98 LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQR 167 (409)
T ss_dssp CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEEC
T ss_pred cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEEC
Confidence 5789998777623333333333 344678888777653 566777777653 577777665
No 147
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=20.38 E-value=3.8e+02 Score=24.39 Aligned_cols=63 Identities=5% Similarity=-0.080 Sum_probs=40.4
Q ss_pred HHHHcCCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCCCCCHHHHHHHHHhcCceEEEEecc
Q 009077 68 GLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (544)
Q Consensus 68 ~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 133 (544)
.+...++++|++|+|...-+.-.+++++|-..-...++.++. +.+ -..+++..++..++...+
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~--~~~-k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI--SSE-KLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHH-HHHHHHHTTCSEEEETTT
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec--hHH-HHHHHHHcCCeEEEeCCC
Confidence 344568899999999987666666666665543344455554 233 345667778877776543
No 148
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=20.33 E-value=5.2e+02 Score=23.95 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=5.0
Q ss_pred HHHhcCceEEEE
Q 009077 119 QAIASKAKIIIT 130 (544)
Q Consensus 119 ~l~~~~~~~vi~ 130 (544)
..+..+.+++.+
T Consensus 138 ~~~~~g~~~~~v 149 (420)
T 1t3i_A 138 VAAKTGAVLKFV 149 (420)
T ss_dssp HHHHHCCEEEEE
T ss_pred HHHhcCcEEEEe
Confidence 333444444444
No 149
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=20.28 E-value=27 Score=22.36 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=13.9
Q ss_pred ccchHHHHhHHhhcccCC
Q 009077 527 KILRKDLRTKLAAGDLRN 544 (544)
Q Consensus 527 K~~r~~l~~~~~~~~~~~ 544 (544)
+..|.+|.+.|.+|++|+
T Consensus 33 e~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 33 EKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcchhhh
Confidence 556788888888888774
No 150
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.12 E-value=1.4e+02 Score=27.28 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCccHHHHHHHHHhhCCeEeecCC--CCCHHHHHHHH---HhcCceEE
Q 009077 56 ADVELTSRKVAAGLSKL--GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANP--FYTPPEIAKQA---IASKAKII 128 (544)
Q Consensus 56 ~el~~~~~~la~~L~~~--g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l~~~l---~~~~~~~v 128 (544)
+.+.++...+-..+++. .+ ++.. .+...+...++.-.|++-.+|.. -+++ ..++.++..++ +..++++|
T Consensus 168 ~~~~~~L~~Ld~~~~~~l~~~-~~~~-~v~~H~af~Yfa~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~I 243 (312)
T 2o1e_A 168 KEYIAKLQDLDKLYRTTAKKA-EKKE-FITQHTAFGYLAKEYGLKQVPIA--GLSPDQEPSAASLAKLKTYAKEHNVKVI 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-SCCE-EEESSCTTHHHHHHTTCEEEECS--SCCSSSCCCHHHHHHHHHHTTSSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCE-EEEECCchHHHHHHCCCeEEEee--ccCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 33444444444444331 22 3444 45556666666655554433321 1222 23566665554 45788999
Q ss_pred EEecchhHHHHH-HHhhcCcEEEEeC
Q 009077 129 ITQAVYNDKVRD-LSEHHGARIVTID 153 (544)
Q Consensus 129 i~~~~~~~~~~~-~~~~~~~~~v~~~ 153 (544)
|+.+...+...+ ++...+.+++.++
T Consensus 244 f~e~~~~~~~~~~ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 244 YFEEIASSKVADTLASEIGAKTEVLN 269 (312)
T ss_dssp ECSSCCCHHHHHHHHHHTCCEEECCC
T ss_pred EEeCCCChHHHHHHHHHhCCcEEEec
Confidence 999887765444 3444566665554
No 151
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=20.05 E-value=2.8e+02 Score=25.38 Aligned_cols=54 Identities=7% Similarity=-0.062 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhh-CCeEeecCCCCCHHHHHHHHHhcCceEEEE
Q 009077 73 GVQKGDVIMLLLQNCPQFVFAFLGASYI-GATSTTANPFYTPPEIAKQAIASKAKIIIT 130 (544)
Q Consensus 73 g~~~g~~V~i~~~~~~~~~~~~lA~~~~-G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 130 (544)
++ +|++|+|...-++-.+++++|-... |+.++-++. +.+.+ ..++..++..++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISR--SKKHR-DFALELGADYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS--CHHHH-HHHHHHTCSEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeC--CHHHH-HHHHHhCCCEEec
Confidence 78 9999999998656777777776543 877666664 34443 3445567766653
Done!