Query 009078
Match_columns 544
No_of_seqs 210 out of 564
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 20:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 1.4E-88 3E-93 729.8 31.9 446 12-480 1-473 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 2.3E-65 4.9E-70 517.7 21.9 263 33-301 2-279 (280)
3 KOG0980 Actin-binding protein 100.0 2.3E-40 5E-45 364.9 17.5 252 33-300 5-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 9.2E-32 2E-36 240.9 12.1 117 35-158 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 1.7E-28 3.7E-33 222.4 11.0 125 33-163 1-125 (127)
6 PF01417 ENTH: ENTH domain; I 99.4 1.6E-12 3.4E-17 117.8 10.9 118 32-156 1-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 1.2E-10 2.6E-15 103.7 10.8 112 36-155 2-113 (115)
8 cd03571 ENTH_epsin ENTH domain 99.2 1.4E-10 3.1E-15 105.4 10.7 114 35-155 2-116 (123)
9 KOG2056 Equilibrative nucleosi 98.8 2E-08 4.4E-13 104.5 8.8 118 31-155 18-136 (336)
10 cd03572 ENTH_epsin_related ENT 98.2 1.1E-05 2.4E-10 73.5 9.5 112 38-155 5-117 (122)
11 KOG2057 Predicted equilibrativ 97.8 5E-05 1.1E-09 78.6 8.2 125 31-160 20-152 (499)
12 cd03568 VHS_STAM VHS domain fa 95.7 0.053 1.2E-06 50.8 8.7 76 35-113 1-76 (144)
13 cd03569 VHS_Hrs_Vps27p VHS dom 95.7 0.072 1.6E-06 49.8 9.4 78 33-113 3-80 (142)
14 PF00790 VHS: VHS domain; Int 95.6 0.064 1.4E-06 49.6 8.8 79 32-113 3-81 (140)
15 cd03565 VHS_Tom1 VHS domain fa 95.5 0.096 2.1E-06 48.9 9.4 77 35-113 2-78 (141)
16 cd03567 VHS_GGA VHS domain fam 95.4 0.11 2.4E-06 48.6 9.3 77 35-114 2-78 (139)
17 smart00288 VHS Domain present 95.3 0.1 2.2E-06 48.1 8.7 75 36-113 2-76 (133)
18 cd03561 VHS VHS domain family; 94.9 0.16 3.4E-06 46.7 8.8 75 36-113 2-76 (133)
19 KOG2199 Signal transducing ada 84.6 4.3 9.2E-05 44.1 8.6 79 32-113 6-84 (462)
20 KOG0414 Chromosome condensatio 74.5 56 0.0012 40.3 14.1 171 74-275 360-573 (1251)
21 KOG1087 Cytosolic sorting prot 55.9 49 0.0011 37.1 8.5 76 35-113 2-77 (470)
22 KOG2675 Adenylate cyclase-asso 41.3 5E+02 0.011 29.1 13.1 29 243-271 101-129 (480)
23 PF07990 NABP: Nucleic acid bi 40.3 90 0.0019 34.1 7.3 38 467-505 247-284 (385)
24 PF02042 RWP-RK: RWP-RK domain 36.3 37 0.00081 26.7 2.8 35 234-277 9-43 (52)
25 KOG3520 Predicted guanine nucl 35.6 1.5E+02 0.0032 36.9 8.7 70 208-283 447-530 (1167)
26 KOG0946 ER-Golgi vesicle-tethe 32.6 2.6E+02 0.0056 33.6 9.7 13 189-201 144-156 (970)
27 PF02184 HAT: HAT (Half-A-TPR) 29.6 42 0.00091 23.9 1.9 26 246-271 3-28 (32)
28 KOG1915 Cell cycle control pro 27.4 73 0.0016 36.0 4.1 27 177-203 150-176 (677)
29 KOG1086 Cytosolic sorting prot 27.4 1.8E+02 0.0038 32.6 6.9 82 32-116 6-87 (594)
30 PTZ00473 Plasmodium Vir superf 25.9 9.4E+02 0.02 26.7 12.6 63 35-106 6-76 (420)
31 KOG4368 Predicted RNA binding 23.4 2.2E+02 0.0047 32.9 6.9 12 512-523 306-317 (757)
32 PF08832 SRC-1: Steroid recept 21.8 49 0.0011 28.2 1.2 12 97-108 58-70 (78)
33 COG0703 AroK Shikimate kinase 20.4 2.4E+02 0.0051 27.6 5.7 115 21-161 16-144 (172)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-88 Score=729.81 Aligned_cols=446 Identities=39% Similarity=0.631 Sum_probs=348.0
Q ss_pred HHHhhhcccccchhhcccCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHH
Q 009078 12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA 91 (544)
Q Consensus 12 ka~GalKD~tsiglAkv~~~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiVa 91 (544)
+++|++||++|+|+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+.++ +++.+|+++|++||++||||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 4789999999999999998889999999999999999999999999999999875 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcccHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCC-
Q 009078 92 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP- 170 (544)
Q Consensus 92 lKtLillHrLLreG~p~f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~e~~~~- 170 (544)
+|+||||||||++|+++|.++++.+ .++|+|++|+|++++.+|||++|||+|++||+||++||+.+++|++..+.
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~ 154 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG 154 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 9999999999999999999888543 36899999999999999999999999999999999999999999985532
Q ss_pred ----CCCCCC-hHHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 009078 171 ----RTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD 245 (544)
Q Consensus 171 ----~~r~l~-~~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~~D 245 (544)
..+++. .+.+|+.+++||.||+++|+|+|.+.+++|.+|++||.+||+|||+||++||+||++|||+||+|+++|
T Consensus 155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~ 234 (491)
T KOG0251|consen 155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD 234 (491)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 445666 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHhCCCCCCCC-CCcccCC---CCCCc
Q 009078 246 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR-KDQTVDN---KVDAP 321 (544)
Q Consensus 246 a~kaleIYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEEylrda~~~~~~~-~~~~~~~---~~~~~ 321 (544)
|+++|+|||||.+|+++|.+||++||++|+.|+++||+|+++|.++|++|||||++.+..+... ....... +....
T Consensus 235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
T KOG0251|consen 235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFSTDFESS 314 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccccchhcc
Confidence 9999999999999999999999999999999999999999999999999999999976332221 0000000 00000
Q ss_pred cc------c-c--c-ccCCCCCCccCCCCCCCCCCCCCCCCCC--CCCCCCcCCCCCCCCccchhhhhcccccccccCCC
Q 009078 322 KE------M-M--A-IEYKKTPEVEEAKPPSPPPPEPVKVEAP--VVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQ 389 (544)
Q Consensus 322 ~~------~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dll~l~~~~~~~~~~~~~~~lala~~~~~~ 389 (544)
+. . + . ++..+.+.+..+. .+.+.++++.+.+ .+.++|++.+.+..+..++.+..|+||||+ .+ .
T Consensus 315 e~~~~~~~~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~ 390 (491)
T KOG0251|consen 315 ESSSRLEEPEEQKEVIEELQEPLEQEED--QPSPNSENPEANDQAGIATDDLLLQPDNLPMFSASTAPNALALAL-PF-P 390 (491)
T ss_pred ccccccccchhhhhcccccccccccccc--CCCCCCCCccccccccccCcchhhcccCCCccccccCcchhhcCC-CC-C
Confidence 00 0 0 0 1222211111110 1111111111111 123345666666677899999999999998 32 1
Q ss_pred CCCCCCCCCCCCCccceeeccCCCCCchhhhhhhhcCCcchhhhhhhhhHHHHHhhcc---CCCCCC--CCCCCCCCCCC
Q 009078 390 PTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQN---ASYSTW--GPQPIAGPTMQ 464 (544)
Q Consensus 390 ~~~~~~~~~~~~~~wElalv~~~s~~~~~~~~~~l~gg~d~l~Ld~~y~~~~~~~~~~---~~~g~~--~~~p~~~~~~~ 464 (544)
....++||+++|+..++.....+..++|||| +||||| ++.+|+.+. +++|++ ...|. ..+.-
T Consensus 391 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 457 (491)
T KOG0251|consen 391 --------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPFGAQPM-PAMAA 457 (491)
T ss_pred --------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCccccCCc-hhhhc
Confidence 3456788888888666533221112899999 999999 777776542 234532 11221 11111
Q ss_pred CCCCCccccccCCCCC
Q 009078 465 PNGHDPFYASGMVSAP 480 (544)
Q Consensus 465 ~~~~dpfaaS~~v~pp 480 (544)
..+.+||..|..+++|
T Consensus 458 ~~~~~~~~~~~~~a~~ 473 (491)
T KOG0251|consen 458 LPQPYPVGQPPFPAQL 473 (491)
T ss_pred ccccCCCCCCCCcCcc
Confidence 2233777777777776
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=2.3e-65 Score=517.73 Aligned_cols=263 Identities=45% Similarity=0.796 Sum_probs=216.2
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009078 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
+++++||+|||+|+++|||+||||.||.+|++ + .+++.|+|+|++|+.+++||+|+||+||++|||||+||+.|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~--~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-P--ESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-T--S-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-C--ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 58999999999999999999999999999998 2 67899999999999999999999999999999999999999998
Q ss_pred HHHhhhcCCCccccccccC--CCCCCCCcccHHHHHHHHHHHHHHHHhhhcccc---cccCCC---------CC-CCCCh
Q 009078 113 VINYGRSRSHMLNMAHFKD--DSSPNAWDYSAWVRSYALFLEERLECFRVLKYD---IETDRP---------RT-KDLDT 177 (544)
Q Consensus 113 ll~~~~sr~~iL~Ls~F~D--~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d---~e~~~~---------~~-r~l~~ 177 (544)
+..+. .+++++.++++ ++++.+|+|+.|||+|++||++|+.||++++.+ ++.+.. .. ..+++
T Consensus 79 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (280)
T PF07651_consen 79 LLRYN---RRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDI 155 (280)
T ss_dssp HHHTT--------TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--H
T ss_pred HHHcc---cchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccH
Confidence 87663 34566666665 677889999999999999999999999999887 543321 22 37788
Q ss_pred HHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 009078 178 AELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAG 257 (544)
Q Consensus 178 ~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~~Da~kaleIYkRf~ 257 (544)
+++|++++.||++|+++++|+|.+.+++|+|+++||++||+||++||+.+|+||++|+|+||+|++.||.++++||+||.
T Consensus 156 ~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~ 235 (280)
T PF07651_consen 156 DDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFA 235 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009078 258 QQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (544)
Q Consensus 258 kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEEylrd 301 (544)
+|+++|++||++|++++++++++||+|+++|++|+.+||||++|
T Consensus 236 ~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 236 KQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999997
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=2.3e-40 Score=364.85 Aligned_cols=252 Identities=20% Similarity=0.297 Sum_probs=217.6
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009078 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
..+-+||.||||.+|+|||+||||.||.+||.+++ +.+||+..+|+...++.+.+||+|+|+||+||||||++.++
T Consensus 5 ~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~e 80 (980)
T KOG0980|consen 5 RAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEE 80 (980)
T ss_pred HHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHH
Confidence 56889999999999999999999999999999985 45689999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccc-----ccccC--------CCCCCCCCh--
Q 009078 113 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY-----DIETD--------RPRTKDLDT-- 177 (544)
Q Consensus 113 ll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~-----d~e~~--------~~~~r~l~~-- 177 (544)
..+| ++++..|+.+|++-+ .|||.+||.|++||..|+.||.++.. ++... ..+..++++
T Consensus 81 s~r~---r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvdm 154 (980)
T KOG0980|consen 81 SQRY---KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVDM 154 (980)
T ss_pred HHHH---HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHHH
Confidence 9877 778999999998753 79999999999999999999998753 22111 113344444
Q ss_pred HHHHhhHHHHHHHHHHHHcCcc-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 009078 178 AELLEHLPALQLLLFRVLGCQP-QGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRA 256 (544)
Q Consensus 178 ~~LL~~L~~LQ~LldrlL~c~p-~g~a~~N~lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~~Da~kaleIYkRf 256 (544)
.++++.+..||+.||+.++..+ .+...+++|++++|++||.||+.||++++..|.+|..- + .+|++.+|+ .||
T Consensus 155 md~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkLHs~---v-p~dtLeghR--dRf 228 (980)
T KOG0980|consen 155 MDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKLHSQ---V-PPDTLEGHR--DRF 228 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHHHcC---C-CHHHhhhHH--HHH
Confidence 4888999999999999998644 44567999999999999999999999999955554331 2 489999998 999
Q ss_pred HHHHHHHHHHHHHhhhcccccC-ccccCCCCCChhhHH--HHHHHHH
Q 009078 257 GQQAERLSEFYEVCKSLDIGRG-ERFIKIEQPPASFLQ--AMEEYVK 300 (544)
Q Consensus 257 ~kQ~e~L~~Fy~~ck~l~~~r~-~~iP~L~~~P~~lL~--~LEEylr 300 (544)
..|+++|++||..|+++.|++. ++||.|+.-||+|+. .+++|+.
T Consensus 229 ~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 229 HTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 9999999999999999999977 699999999999987 6888876
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.97 E-value=9.2e-32 Score=240.92 Aligned_cols=117 Identities=43% Similarity=0.718 Sum_probs=107.6
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHH
Q 009078 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVI 114 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEll 114 (544)
++++|+|||+|+++|||+|||++||.+|++++ .++.+|+++|.+|+.. +||+|+||+|||+|+|||+|++.|.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 47899999999999999999999999998853 6789999999999986 99999999999999999999999988875
Q ss_pred HhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHh
Q 009078 115 NYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 158 (544)
Q Consensus 115 ~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~ 158 (544)
.+ ..+|++++|.|.+++.+|||+.|||.|++||++|++||
T Consensus 78 ~~----~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 SR----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred Hc----cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 43 45899999999887788999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=1.7e-28 Score=222.38 Aligned_cols=125 Identities=35% Similarity=0.513 Sum_probs=112.0
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009078 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
++++++|+|||||+++|||+|||++|+.+|++++ .++..|+..|.+||.++++|+|++|+|+|||+||++|++.|..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999999999999999999998874 57899999999999887799999999999999999999988766
Q ss_pred HHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccc
Q 009078 113 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY 163 (544)
Q Consensus 113 ll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~ 163 (544)
+..+ +..+++|++|++. ++.+||++.|||.|++||++||.+++.++.
T Consensus 79 ~~~~---~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~ 125 (127)
T smart00273 79 ALRN---RNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKE 125 (127)
T ss_pred HHHh---hHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhc
Confidence 6433 3468999999987 567899999999999999999999998764
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.40 E-value=1.6e-12 Score=117.78 Aligned_cols=118 Identities=23% Similarity=0.274 Sum_probs=92.9
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhh--ccCCChHHHHHHHHHHHHHHhhCCccc
Q 009078 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL--SKTHNWAVALKTLIVIHRALREVDPTF 109 (544)
Q Consensus 32 ~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL--~kT~nWiValKtLillHrLLreG~p~f 109 (544)
|+++++-|.+||+.++++|..+++.+|...|+.+ .+...++..|.+|| .+.++|.+++|+|.+||.|++.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 5789999999999999999999999999999886 35677888999999 357899999999999999999999999
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHH
Q 009078 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (544)
Q Consensus 110 ~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~ 156 (544)
..++..+.. .+-.+.+|+. .++.+.+++.-||..|+-|-+-|.
T Consensus 78 ~~~~~~~~~---~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 78 VDELRDHID---IIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHHHTHH---HHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 887744322 3667788865 233678899999999999877653
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.20 E-value=1.2e-10 Score=103.69 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=90.6
Q ss_pred HHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHHH
Q 009078 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVIN 115 (544)
Q Consensus 36 dvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEll~ 115 (544)
++.|.|||+++...|+.+++.+|...+.... .....++..|.+||.. +||.|++|+|.|+|.|+..|++.|..++..
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~--~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETN--VGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCC--ccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 5789999999999999999999999997652 5678899999999964 699999999999999999999998876632
Q ss_pred hhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 009078 116 YGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (544)
Q Consensus 116 ~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 155 (544)
+..+.++..| +.....+.+.+..||.++++|.+..
T Consensus 79 ----~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 79 ----NDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred ----hHHHHHHHHh-hccccccCCCChHHHHHHHHHHHHH
Confidence 3334455455 3233345677899999999997653
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.18 E-value=1.4e-10 Score=105.42 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009078 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~k-T~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
.++-|..|||+++++|..+++.+|..+|++. .++..++..|.+||.. .++|.+++|+|+|++.||+.|++.|..++
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5788999999999999999999999999885 4678899999999974 48999999999999999999999888777
Q ss_pred HHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 009078 114 INYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (544)
Q Consensus 114 l~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 155 (544)
...+. .+-.|.+|.-. ...+.|.+.-||.=|+-|-+-|
T Consensus 79 r~~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 79 RENLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHhHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 43322 24445666421 1245689999999888776554
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.76 E-value=2e-08 Score=104.52 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=93.3
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCCccc
Q 009078 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (544)
Q Consensus 31 ~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~k-T~nWiValKtLillHrLLreG~p~f 109 (544)
+|++.++.|.-||+.+...|.-+++-+|..+|+.. ..+.++|..|+||+.+ -++|++++|+|.||-.||..|+..|
T Consensus 18 ~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv 94 (336)
T KOG2056|consen 18 NYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERV 94 (336)
T ss_pred cchHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHH
Confidence 48999999999999999999999999999999986 5789999999999974 6899999999999999999999887
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 009078 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (544)
Q Consensus 110 ~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 155 (544)
.+++...+. .|--|..|.-- ...+.|.+..||.-++-|...|
T Consensus 95 ~~~~ren~~---~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~~LL 136 (336)
T KOG2056|consen 95 VDETRENIY---TIETLKDFQYI-DEDGKDQGLNVRKKAKELLSLL 136 (336)
T ss_pred HHHHHhhhH---HHHHHhhceee-CCCCccchHHHHHHHHHHHHHh
Confidence 766622211 12233445311 1235788888998887774444
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.17 E-value=1.1e-05 Score=73.55 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=88.5
Q ss_pred HHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHHHhh
Q 009078 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYG 117 (544)
Q Consensus 38 AIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEll~~~ 117 (544)
.|.+||+.++.||--=-.++|...|+.+. ..+.+++..|.+||.+ ++..|-+|+|-+|-.|++.|++.|+.++...+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 57899999998877777789999998853 5678889999999975 67888899999999999999999887664443
Q ss_pred hcCCCccccccccCCCCC-CCCcccHHHHHHHHHHHHHH
Q 009078 118 RSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEERL 155 (544)
Q Consensus 118 ~sr~~iL~Ls~F~D~ss~-~s~d~safVR~Ya~YLdeRL 155 (544)
. .|-.+.+|+..-.+ .+++.+..||.=|+=|-+-+
T Consensus 82 ~---~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 82 A---QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred H---HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 2 36667788764444 56888999998887665443
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.83 E-value=5e-05 Score=78.58 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=96.8
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHhhCCcc
Q 009078 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK--THNWAVALKTLIVIHRALREVDPT 108 (544)
Q Consensus 31 ~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~k--T~nWiValKtLillHrLLreG~p~ 108 (544)
+|++.+.-|..|||-|.+.|.--.+-+|-.+|...- -.++.+++..|..|+-+ ..+|.-++|+|||+..||+.|...
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 589999999999999999999999999999997521 14688899999999953 469999999999999999999999
Q ss_pred cHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHH------HHHHHHhhh
Q 009078 109 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL------EERLECFRV 160 (544)
Q Consensus 109 f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YL------deRL~~~r~ 160 (544)
|+++...++- .-+-|.--+|-|.. +.|.+-.||.-.+-| ++||+.-|+
T Consensus 99 ~VqeAREh~Y-dLR~LEnYhfiDEh---GKDQGINIR~kVKeilEfanDDd~Lq~ERk 152 (499)
T KOG2057|consen 99 FVQEAREHAY-DLRRLENYHFIDEH---GKDQGINIRHKVKEILEFANDDDLLQAERK 152 (499)
T ss_pred HHHHHHHHHH-HHHhhhhccchhhh---CccccccHHHHHHHHHHHhccHHHHHHHHH
Confidence 9888744332 11112223566653 467888899888777 556666554
No 12
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.74 E-value=0.053 Score=50.83 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009078 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
+|..|.|||+....-|+--.+-+|-...... + .....++.+|.+||. .+|..|++.+|.|+--|+..+...|..|+
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~-~-~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSD-E-NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3678999999998889998888888877665 2 567899999999996 58999999999999999999998887777
No 13
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.69 E-value=0.072 Score=49.78 Aligned_cols=78 Identities=28% Similarity=0.396 Sum_probs=66.9
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009078 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
+.++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.|+.-|+..+...|..|
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5689999999999888899999888888876543 456889999999995 5899999999999999999987777766
Q ss_pred H
Q 009078 113 V 113 (544)
Q Consensus 113 l 113 (544)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 6
No 14
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.63 E-value=0.064 Score=49.64 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=65.3
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 009078 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (544)
Q Consensus 32 ~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~e 111 (544)
...++..|.|||++...-|+-..+-.|........ .....++.+|.+||. .+|..|.+-+|.|+.-|+..+.+.|..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~--~~~kea~~~l~krl~-~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSP--DGAKEAARALRKRLK-HGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST--THHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36789999999999988888888888888877662 456889999999996 589999999999999999999888877
Q ss_pred HH
Q 009078 112 EV 113 (544)
Q Consensus 112 El 113 (544)
++
T Consensus 80 ev 81 (140)
T PF00790_consen 80 EV 81 (140)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 15
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.48 E-value=0.096 Score=48.88 Aligned_cols=77 Identities=23% Similarity=0.226 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009078 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
++..|.|||+....-|+--.+-+|-...... + .....++++|.+||...+|..|++-+|.|+--|+..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~-~-~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINET-E-DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCC-C-CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4678999999998888988888888877653 2 567889999999997567999999999999999999998888777
No 16
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.38 E-value=0.11 Score=48.56 Aligned_cols=77 Identities=26% Similarity=0.356 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHH
Q 009078 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVI 114 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEll 114 (544)
++..|.|||+....-|+--++-+|....... + .....++.+|.+||. .+|..|++-+|.++.-|+..+...|..++.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 6889999999999999999999988888654 3 456789999999996 689999999999999999988888877763
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.27 E-value=0.1 Score=48.09 Aligned_cols=75 Identities=27% Similarity=0.266 Sum_probs=64.6
Q ss_pred HHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009078 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 36 dvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
+..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++.+|.++--++..+...|..|+
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~--~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTP--DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5679999999988899999888888876652 456888999999995 68999999999999999999887787666
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.88 E-value=0.16 Score=46.70 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=63.8
Q ss_pred HHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009078 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 36 dvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
+..|.|||+....-|+-.-+-+|........ .....++++|.+||. .+|..|++.+|.++--|+..+...|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4679999998888888888888888776653 556889999999995 57999999999999999999988887666
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.61 E-value=4.3 Score=44.08 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=61.7
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 009078 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (544)
Q Consensus 32 ~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~e 111 (544)
...++..|.|||+...+-=+=.+|-.+-...... | -.-..|+.+|.|||. +++.-|++-+|-|+.-|.......|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~-~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-P-DGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-C-cccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4678899999999887765555665555544443 3 234789999999995 689999999999999999887777877
Q ss_pred HH
Q 009078 112 EV 113 (544)
Q Consensus 112 El 113 (544)
|+
T Consensus 83 EV 84 (462)
T KOG2199|consen 83 EV 84 (462)
T ss_pred HH
Confidence 77
No 20
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.49 E-value=56 Score=40.26 Aligned_cols=171 Identities=20% Similarity=0.206 Sum_probs=98.7
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCc--ccHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHH
Q 009078 74 CIHALAKRLSKTHNWAVALKTLIVIHRALREVDP--TFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 151 (544)
Q Consensus 74 ~v~~L~rRL~kT~nWiValKtLillHrLLreG~p--~f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YL 151 (544)
.+..|..|+. +-+.-|-.|.|-++||+.+.-.- .++.+++.-. .+..-| -|..||.||--|
T Consensus 360 ~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la--------~grl~D--------kSslVRk~Ai~L 422 (1251)
T KOG0414|consen 360 LLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELA--------IGRLED--------KSSLVRKNAIQL 422 (1251)
T ss_pred HHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHH--------hccccc--------ccHHHHHHHHHH
Confidence 6677888885 56889999999999999987442 2333333211 122223 357999999888
Q ss_pred HHHHHHhh----hccccc-----cc-------CCC-----------CCCCCChHHHHhhHHHHH----HHHHHHHcCccC
Q 009078 152 EERLECFR----VLKYDI-----ET-------DRP-----------RTKDLDTAELLEHLPALQ----LLLFRVLGCQPQ 200 (544)
Q Consensus 152 deRL~~~r----~~~~d~-----e~-------~~~-----------~~r~l~~~~LL~~L~~LQ----~LldrlL~c~p~ 200 (544)
...+--.. +++.+. +. +.. ..+....+.+++..+.-. ........|.+.
T Consensus 423 l~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e 502 (1251)
T KOG0414|consen 423 LSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEE 502 (1251)
T ss_pred HHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchh
Confidence 66654322 121111 00 000 011111123333333222 111122223211
Q ss_pred --------C-cccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009078 201 --------G-AAVHNFVI-QLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVC 270 (544)
Q Consensus 201 --------g-~a~~N~lv-l~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~~Da~kaleIYkRf~kQ~e~L~~Fy~~c 270 (544)
. ...+|+++ +.+++.-++|.+.+-+.+.+++-.++..+|.=...|..++.+ ||-.|
T Consensus 503 ~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Id--------------fl~~c 568 (1251)
T KOG0414|consen 503 HCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAID--------------FLVRC 568 (1251)
T ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH--------------HHHHH
Confidence 1 11233333 347777789999999999999999999999988888877765 66667
Q ss_pred hhccc
Q 009078 271 KSLDI 275 (544)
Q Consensus 271 k~l~~ 275 (544)
+..|+
T Consensus 569 ~~F~I 573 (1251)
T KOG0414|consen 569 KQFGI 573 (1251)
T ss_pred HHhCC
Confidence 76665
No 21
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.86 E-value=49 Score=37.11 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009078 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
+...|-|||+..-.-|+=-..-+|-....... ......+++|.|||.. ++-.|++=+|.||--|+..-...|..++
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh~~V 77 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFHLQV 77 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45789999999877787666555554443332 2345789999999964 5558888899999888876554554333
No 22
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=41.34 E-value=5e+02 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009078 243 RHDALKALDIYRRAGQQAERLSEFYEVCK 271 (544)
Q Consensus 243 ~~Da~kaleIYkRf~kQ~e~L~~Fy~~ck 271 (544)
+++..+..+..+.+..+.-++..|=+.=|
T Consensus 101 KPds~elad~LkPI~e~i~eI~~fkE~nR 129 (480)
T KOG2675|consen 101 KPDSNELADLLKPINEEIGEINNFKEKNR 129 (480)
T ss_pred CCChHHHHHHhhhHHHhhhHHhhhhhccc
Confidence 45666666777777777777766555444
No 23
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=40.27 E-value=90 Score=34.15 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 009078 467 GHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQM 505 (544)
Q Consensus 467 ~~dpfaaS~~v~pp~~vqma~m~~~~~~~~~~q~~~~~~ 505 (544)
..|||...+-+ =.+|.=+-.+++-.=.-+++||.+|..
T Consensus 247 ~~dP~~~R~~~-G~s~~dl~~~qKayl~~lL~~QK~Qy~ 284 (385)
T PF07990_consen 247 QNDPSVDRNYM-GSSYMDLLGLQKAYLEALLAQQKSQYG 284 (385)
T ss_pred cCCcccccCCc-CccccchHHHHHHHHHHHHHHHHHhhC
Confidence 45999988866 555544444444433345566655654
No 24
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=36.30 E-value=37 Score=26.73 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=25.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009078 234 LVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGR 277 (544)
Q Consensus 234 LLe~fFeM~~~Da~kaleIYkRf~kQ~e~L~~Fy~~ck~l~~~r 277 (544)
-|..||.|+..||.+.|.|-....| ..|+.+|+.|
T Consensus 9 ~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~R 43 (52)
T PF02042_consen 9 DLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIPR 43 (52)
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCCC
Confidence 3567999999999999886444433 4688888643
No 25
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=35.61 E-value=1.5e+02 Score=36.86 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhc
Q 009078 208 VIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ--------------AERLSEFYEVCKSL 273 (544)
Q Consensus 208 lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~~Da~kaleIYkRf~kQ--------------~e~L~~Fy~~ck~l 273 (544)
+-..+|....+|+..||+.|-| ||.-+|+-.-.++. -++|-.||.+ =.++..|+..|.+-
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~ae~L--~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~ 520 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGD----LLLDQFSGENAERL--KKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN 520 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHH----HHHHHcCchHHHHH--HHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence 4456777778888877777776 44457776544433 3566666553 23455677766665
Q ss_pred ccccCccccC
Q 009078 274 DIGRGERFIK 283 (544)
Q Consensus 274 ~~~r~~~iP~ 283 (544)
-++|.+++|+
T Consensus 521 p~cRRL~lkd 530 (1167)
T KOG3520|consen 521 PVCRRLGLKD 530 (1167)
T ss_pred hHHHhhcchH
Confidence 5666555443
No 26
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.56 E-value=2.6e+02 Score=33.63 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=10.2
Q ss_pred HHHHHHHcCccCC
Q 009078 189 LLLFRVLGCQPQG 201 (544)
Q Consensus 189 ~LldrlL~c~p~g 201 (544)
+||.++|.|||..
T Consensus 144 qLlsalls~r~~e 156 (970)
T KOG0946|consen 144 QLLSALLSCRPTE 156 (970)
T ss_pred HHHHHHHhcCCHH
Confidence 5788889998854
No 27
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.62 E-value=42 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009078 246 ALKALDIYRRAGQQAERLSEFYEVCK 271 (544)
Q Consensus 246 a~kaleIYkRf~kQ~e~L~~Fy~~ck 271 (544)
-.+|=.||.||...+-.+..+.++|+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45666799999999999999888886
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.37 E-value=73 Score=36.02 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.3
Q ss_pred hHHHHhhHHHHHHHHHHHHcCccCCcc
Q 009078 177 TAELLEHLPALQLLLFRVLGCQPQGAA 203 (544)
Q Consensus 177 ~~~LL~~L~~LQ~LldrlL~c~p~g~a 203 (544)
.++.|..+....++..|-+.|.|...+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 468888898899999999999886644
No 29
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.35 E-value=1.8e+02 Score=32.58 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=57.9
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 009078 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (544)
Q Consensus 32 ~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~e 111 (544)
...||.=|.|||+....--+-|++.-++.-.... + ..-.-.+|.|+.+++.-..| -|+-+|.++..|++.|...|.+
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkd-p-~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~ 82 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKD-P-EGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHE 82 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcC-C-CCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHH
Confidence 3568889999999877444455666555544433 2 22233478888888755555 5788999999999999988888
Q ss_pred HHHHh
Q 009078 112 EVINY 116 (544)
Q Consensus 112 Ell~~ 116 (544)
|+-+|
T Consensus 83 evgkf 87 (594)
T KOG1086|consen 83 EVGKF 87 (594)
T ss_pred HHHHH
Confidence 87544
No 30
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=25.87 E-value=9.4e+02 Score=26.69 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCC-----CCC-CHhhHHHHHHHHhcCCCCCcHHHHHHHHHH--hhccCCChHHHHHHHHHHHHHHhhCC
Q 009078 35 LDIAIVKATNHVE-----RPA-KEKHIRAVFASISATRPRADVAYCIHALAK--RLSKTHNWAVALKTLIVIHRALREVD 106 (544)
Q Consensus 35 LdvAIvKATshde-----~PP-KeKHVr~Il~~T~~~~p~~~v~~~v~~L~r--RL~kT~nWiValKtLillHrLLreG~ 106 (544)
.+.||+||...+- +|- .--|+|-|-..+..+ + |. .|+. +. +..+=-++.|..-.||-+++.|+
T Consensus 6 ~dtai~k~lk~ey~fl~nwp~y~f~~~rg~y~~~y~s-----i--C~-~is~~s~~-~~~~k~~C~kffs~leni~~rg~ 76 (420)
T PTZ00473 6 RDTAIVKALKKEYPFLANWPDYHFEDLRGIYNATYES-----I--CE-EISSVSDY-NKVNKENCIKFFSILENIVRRGD 76 (420)
T ss_pred HHHHHHHHHHHhchHhhcCcccCHHHHhhhhHhHHHH-----H--HH-Hhhcccch-hhhhHHHHHHHHHHHHHHhcccc
Confidence 4679999976542 221 223455554444221 1 22 2220 11 12344678999999999999986
No 31
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.36 E-value=2.2e+02 Score=32.94 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCC
Q 009078 512 QTANPFANPYAA 523 (544)
Q Consensus 512 ~~~~~~~~~~~~ 523 (544)
++.|||+.+|.-
T Consensus 306 ~~~~p~dq~hpq 317 (757)
T KOG4368|consen 306 PPNKPFDQPHPV 317 (757)
T ss_pred CCCCCCCCCCCC
Confidence 455677776643
No 32
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=21.81 E-value=49 Score=28.23 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=8.3
Q ss_pred HHHHHHhhC-Ccc
Q 009078 97 VIHRALREV-DPT 108 (544)
Q Consensus 97 llHrLLreG-~p~ 108 (544)
++||||++| .|.
T Consensus 58 ILHrLLQng~SP~ 70 (78)
T PF08832_consen 58 ILHRLLQNGNSPV 70 (78)
T ss_dssp HHHHHHHCS----
T ss_pred HHHHHHhcCCCHH
Confidence 589999999 553
No 33
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=20.36 E-value=2.4e+02 Score=27.57 Aligned_cols=115 Identities=23% Similarity=0.257 Sum_probs=62.4
Q ss_pred ccch--hhcccC-CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHH
Q 009078 21 TTVS--LAKVNS-DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97 (544)
Q Consensus 21 tsig--lAkv~~-~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLil 97 (544)
++|| |||.-+ .|-|.|..|.+.|. +-|.+|+..- +. . -|+.+..+ ++|.|..
T Consensus 16 STIGr~LAk~L~~~F~D~D~~Ie~~~g--------~sI~eIF~~~-GE---~----~FR~~E~~---------vl~~l~~ 70 (172)
T COG0703 16 STIGRALAKALNLPFIDTDQEIEKRTG--------MSIAEIFEEE-GE---E----GFRRLETE---------VLKELLE 70 (172)
T ss_pred hHHHHHHHHHcCCCcccchHHHHHHHC--------cCHHHHHHHH-hH---H----HHHHHHHH---------HHHHHhh
Confidence 4565 566654 58899999999887 3355665531 11 1 23433333 3566666
Q ss_pred HH-HHHhhCCcccH-HHHHHhhhcCCC--ccccc------ccc-CCCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Q 009078 98 IH-RALREVDPTFH-EEVINYGRSRSH--MLNMA------HFK-DDSSPNAWDYSAWVRSYALFLEERLECFRVL 161 (544)
Q Consensus 98 lH-rLLreG~p~f~-eEll~~~~sr~~--iL~Ls------~F~-D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~ 161 (544)
.| .++.-|...+. +|..++++.++. +|+.+ +.. |.+.+.-.+-.. ...+-..+++|.-+|+..
T Consensus 71 ~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~-~~~l~~L~~~R~~~Y~e~ 144 (172)
T COG0703 71 EDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDP-REELEELLEERQPLYREV 144 (172)
T ss_pred cCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCCh-HHHHHHHHHHHHHHHHHh
Confidence 65 66777776665 566677775554 22221 122 223333333333 334556666666666653
Done!