Query 009079
Match_columns 544
No_of_seqs 230 out of 2763
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 20:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0472 Leucine-rich repeat pr 100.0 1.6E-53 3.6E-58 380.6 -7.2 531 1-537 1-544 (565)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-46 3.3E-51 412.5 32.0 500 10-535 70-585 (968)
3 PLN00113 leucine-rich repeat r 100.0 4.3E-45 9.3E-50 401.0 33.1 477 45-535 69-561 (968)
4 KOG0472 Leucine-rich repeat pr 100.0 3.2E-43 6.9E-48 314.8 -12.6 457 5-512 64-542 (565)
5 KOG4194 Membrane glycoprotein 100.0 9.5E-38 2.1E-42 292.3 7.0 378 46-482 53-446 (873)
6 KOG4194 Membrane glycoprotein 100.0 1E-37 2.2E-42 292.1 5.2 362 118-538 82-456 (873)
7 KOG0618 Serine/threonine phosp 100.0 3.2E-38 7E-43 310.7 -3.8 455 13-532 2-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.4E-35 5.3E-40 290.5 -1.3 459 8-531 44-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6E-34 1.3E-38 269.1 0.6 379 9-459 7-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.3E-33 2.8E-38 266.9 -2.8 362 112-533 5-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3E-21 6.6E-26 212.7 30.2 239 62-308 552-812 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.1E-21 4.6E-26 213.9 24.7 322 44-413 557-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.7E-25 7.9E-30 198.9 -4.7 410 12-461 49-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 5.1E-22 1.1E-26 203.0 17.5 256 186-511 203-458 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 7.6E-22 1.7E-26 201.7 17.1 258 10-312 202-459 (788)
16 KOG4237 Extracellular matrix p 99.8 1.6E-22 3.5E-27 182.0 -2.7 388 9-437 67-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 6.6E-20 1.4E-24 188.9 14.5 246 46-311 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.9E-20 1.9E-24 187.9 13.7 246 10-289 179-429 (754)
19 KOG0617 Ras suppressor protein 99.7 7.6E-20 1.6E-24 145.9 -4.0 164 39-226 27-192 (264)
20 KOG0617 Ras suppressor protein 99.7 4.7E-19 1E-23 141.4 -3.7 158 7-177 31-190 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 1.8E-17 4E-22 159.3 3.0 158 376-533 132-319 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 7.2E-17 1.6E-21 155.2 4.7 55 73-127 3-64 (319)
23 KOG1909 Ran GTPase-activating 99.5 9.3E-15 2E-19 130.6 1.0 245 204-510 27-310 (382)
24 KOG0532 Leucine-rich repeat (L 99.4 1.1E-14 2.5E-19 138.0 -3.8 206 2-221 43-248 (722)
25 KOG1909 Ran GTPase-activating 99.4 6.4E-14 1.4E-18 125.3 -0.3 132 135-266 155-311 (382)
26 PF14580 LRR_9: Leucine-rich r 99.4 4.7E-13 1E-17 112.6 4.7 125 399-527 15-146 (175)
27 PF14580 LRR_9: Leucine-rich r 99.3 3.3E-13 7.1E-18 113.5 1.9 111 425-539 17-131 (175)
28 COG4886 Leucine-rich repeat (L 99.3 2.3E-12 5E-17 127.4 7.3 178 45-224 116-294 (394)
29 KOG3207 Beta-tubulin folding c 99.3 3.1E-13 6.7E-18 124.4 0.7 210 59-268 112-341 (505)
30 COG4886 Leucine-rich repeat (L 99.3 3.1E-12 6.7E-17 126.5 7.6 194 72-267 97-291 (394)
31 KOG1259 Nischarin, modulator o 99.3 1.2E-12 2.6E-17 114.7 3.6 207 60-269 174-415 (490)
32 KOG1259 Nischarin, modulator o 99.3 1.8E-12 3.8E-17 113.6 3.5 132 183-315 283-416 (490)
33 KOG0532 Leucine-rich repeat (L 99.3 2.5E-13 5.3E-18 129.1 -2.1 194 8-217 74-270 (722)
34 KOG3207 Beta-tubulin folding c 99.2 5.6E-12 1.2E-16 116.3 2.9 200 44-243 120-339 (505)
35 KOG0531 Protein phosphatase 1, 99.0 3.6E-11 7.8E-16 118.9 -0.5 242 66-312 70-319 (414)
36 KOG0531 Protein phosphatase 1, 99.0 5.9E-11 1.3E-15 117.4 -0.7 240 44-289 71-319 (414)
37 PF13855 LRR_8: Leucine rich r 98.9 5.3E-10 1.2E-14 77.3 3.1 59 428-486 2-60 (61)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.8E-14 114.2 5.9 123 47-170 525-652 (889)
39 PF13855 LRR_8: Leucine rich r 98.9 6.6E-10 1.4E-14 76.8 1.6 61 403-463 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.9 2E-09 4.4E-14 113.8 5.8 241 10-266 524-783 (889)
41 KOG1859 Leucine-rich repeat pr 98.7 2.5E-10 5.4E-15 112.0 -5.7 131 379-514 163-295 (1096)
42 KOG1859 Leucine-rich repeat pr 98.7 6.6E-10 1.4E-14 109.1 -4.7 129 404-537 165-295 (1096)
43 COG5238 RNA1 Ran GTPase-activa 98.7 2.8E-09 6.1E-14 92.5 -0.9 91 206-313 29-135 (388)
44 COG5238 RNA1 Ran GTPase-activa 98.6 5.2E-08 1.1E-12 84.9 5.5 161 4-173 25-227 (388)
45 PLN03150 hypothetical protein; 98.6 1.3E-07 2.7E-12 98.2 9.1 105 405-509 420-526 (623)
46 KOG2120 SCF ubiquitin ligase, 98.6 2E-09 4.4E-14 94.7 -3.8 171 46-216 186-372 (419)
47 KOG2120 SCF ubiquitin ligase, 98.6 7.5E-10 1.6E-14 97.4 -6.9 173 277-508 187-373 (419)
48 PLN03150 hypothetical protein; 98.6 9.2E-08 2E-12 99.2 6.8 108 428-535 419-529 (623)
49 KOG4579 Leucine-rich repeat (L 98.5 1.8E-08 3.8E-13 78.3 0.1 115 8-132 26-141 (177)
50 KOG4341 F-box protein containi 98.5 4.5E-09 9.8E-14 96.9 -4.7 132 401-532 292-437 (483)
51 KOG1644 U2-associated snRNP A' 98.4 4.4E-07 9.6E-12 75.7 5.1 124 405-531 21-150 (233)
52 KOG1644 U2-associated snRNP A' 98.4 6.5E-07 1.4E-11 74.8 5.7 106 403-510 42-152 (233)
53 KOG4579 Leucine-rich repeat (L 98.3 4.1E-08 8.8E-13 76.4 -2.2 109 70-178 29-141 (177)
54 KOG2982 Uncharacterized conser 98.3 2.8E-07 6.2E-12 81.5 2.4 196 66-261 69-287 (418)
55 PF12799 LRR_4: Leucine Rich r 98.3 5.4E-07 1.2E-11 56.7 3.0 41 475-515 1-41 (44)
56 PRK15386 type III secretion pr 98.3 5E-06 1.1E-10 79.2 10.6 134 357-509 52-188 (426)
57 KOG3665 ZYG-1-like serine/thre 98.3 1.2E-06 2.5E-11 90.8 6.0 102 88-190 170-281 (699)
58 PF13306 LRR_5: Leucine rich r 98.2 2.3E-06 5E-11 69.8 6.0 120 398-523 7-128 (129)
59 PF12799 LRR_4: Leucine Rich r 98.2 2.8E-06 6E-11 53.5 4.3 38 46-83 2-39 (44)
60 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.5E-11 77.7 1.9 200 68-267 45-263 (418)
61 KOG3665 ZYG-1-like serine/thre 98.1 2.6E-06 5.6E-11 88.3 4.1 129 68-197 122-263 (699)
62 PRK15386 type III secretion pr 98.0 6.2E-05 1.3E-09 71.9 11.1 74 64-148 48-123 (426)
63 PF13306 LRR_5: Leucine rich r 98.0 1.3E-05 2.8E-10 65.3 5.4 120 376-501 8-129 (129)
64 KOG4341 F-box protein containi 97.9 9.3E-07 2E-11 82.0 -2.6 286 10-305 139-459 (483)
65 KOG2123 Uncharacterized conser 97.1 5.5E-05 1.2E-09 66.7 -1.9 81 8-103 18-100 (388)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00032 7E-09 61.7 2.0 112 399-513 39-158 (260)
67 KOG2123 Uncharacterized conser 97.0 2.3E-05 4.9E-10 69.1 -5.5 99 425-527 17-123 (388)
68 KOG1947 Leucine rich repeat pr 96.7 0.00046 1E-08 70.5 0.5 230 5-264 184-438 (482)
69 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.6E-08 57.3 2.5 103 424-528 40-150 (260)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0049 1.1E-07 32.0 1.1 17 477-493 2-18 (22)
71 KOG0473 Leucine-rich repeat pr 95.7 0.00022 4.9E-09 61.3 -6.4 81 45-125 42-122 (326)
72 KOG1947 Leucine rich repeat pr 95.6 0.0017 3.6E-08 66.4 -2.1 130 379-508 187-331 (482)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0046 9.9E-08 32.1 0.4 21 499-519 1-21 (22)
74 PF13504 LRR_7: Leucine rich r 95.5 0.0092 2E-07 28.7 1.3 15 476-490 2-16 (17)
75 KOG4308 LRR-containing protein 95.3 9.7E-05 2.1E-09 73.4 -11.6 176 359-534 89-303 (478)
76 PF13504 LRR_7: Leucine rich r 95.3 0.01 2.3E-07 28.5 1.3 17 498-514 1-17 (17)
77 KOG4308 LRR-containing protein 95.0 0.00039 8.5E-09 69.2 -8.5 179 11-198 89-304 (478)
78 KOG3864 Uncharacterized conser 94.8 0.0017 3.6E-08 54.9 -3.9 82 403-484 101-185 (221)
79 KOG0473 Leucine-rich repeat pr 94.4 0.0012 2.7E-08 56.9 -5.8 93 57-149 30-123 (326)
80 KOG3864 Uncharacterized conser 93.8 0.0053 1.1E-07 52.0 -3.0 81 380-460 101-185 (221)
81 smart00369 LRR_TYP Leucine-ric 92.5 0.091 2E-06 28.5 1.6 17 476-492 3-19 (26)
82 smart00370 LRR Leucine-rich re 92.5 0.091 2E-06 28.5 1.6 17 476-492 3-19 (26)
83 smart00370 LRR Leucine-rich re 90.3 0.33 7.1E-06 26.2 2.4 18 404-421 3-20 (26)
84 smart00369 LRR_TYP Leucine-ric 90.3 0.33 7.1E-06 26.2 2.4 18 404-421 3-20 (26)
85 smart00364 LRR_BAC Leucine-ric 86.9 0.44 9.6E-06 25.6 1.4 19 498-516 2-20 (26)
86 PF13516 LRR_6: Leucine Rich r 84.1 0.24 5.1E-06 26.2 -0.5 14 403-416 2-15 (24)
87 smart00365 LRR_SD22 Leucine-ri 83.1 1.1 2.4E-05 24.3 1.8 17 498-514 2-18 (26)
88 smart00367 LRR_CC Leucine-rich 75.4 1.9 4.2E-05 23.2 1.3 16 402-417 1-17 (26)
89 KOG3763 mRNA export factor TAP 74.9 0.85 1.8E-05 45.3 -0.3 54 474-527 243-307 (585)
90 smart00368 LRR_RI Leucine rich 67.5 4.2 9.2E-05 22.4 1.6 15 403-417 2-16 (28)
91 KOG4242 Predicted myosin-I-bin 66.1 36 0.00077 33.7 8.2 57 209-265 415-480 (553)
92 KOG3763 mRNA export factor TAP 57.6 5 0.00011 40.1 1.1 61 379-440 217-283 (585)
93 KOG4242 Predicted myosin-I-bin 37.1 1.1E+02 0.0024 30.5 6.4 242 10-269 166-456 (553)
94 TIGR00864 PCC polycystin catio 34.3 16 0.00035 44.4 0.7 32 457-488 1-32 (2740)
95 TIGR00864 PCC polycystin catio 20.2 79 0.0017 39.0 2.8 31 386-416 1-32 (2740)
No 1
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-53 Score=380.55 Aligned_cols=531 Identities=45% Similarity=0.670 Sum_probs=465.3
Q ss_pred ChHHHHHhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCC
Q 009079 1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL 80 (544)
Q Consensus 1 ~~~~~~~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 80 (544)
++++.+.++.-.++++|+..+++.|.++++......+.+.||+...+.++.+++|.++.+.+.+.++..+.++++.+|+.
T Consensus 1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l 80 (565)
T KOG0472|consen 1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL 80 (565)
T ss_pred CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence 35788999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCC
Q 009079 81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160 (544)
Q Consensus 81 ~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 160 (544)
..+|.+++.+..++.++.++|.+..+|+.++.+..|.+++++.|.+..+++.++.+..++.++..+|.+..+|+.+..+.
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (544)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 240 (544)
++..+++.++.+...+..... +++|++++...|.++.+|..++.+.+|..|++..|++..+| .|.+|..|.++.++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence 999999999999999888666 99999999999999999999999999999999999999998 7999999999999999
Q ss_pred cCCcCchhhh-CCCCCCEEECCCCcCcccchhccccc-ccEEEccCCCCCCCCccccCCCCcceeccCCCCCcccccccc
Q 009079 241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (544)
Q Consensus 241 ~~~~l~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 318 (544)
.++.+|.+.. +++++.+||+.+|+++++|...+..+ |++||+++|.++.+|..++++ .|+.+-+.||++.++.....
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 9999987755 89999999999999999999988877 999999999999999999999 99999999999999999999
Q ss_pred CCCchHHHHHHhhcCCCCCccccccchhh------hhhhhhcccccceeeecCCCccCCCchhhccCCC---ccEEEcCC
Q 009079 319 NGPTPALLKYLRSRLPENEDSEASTTKED------LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR 389 (544)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~---L~~L~l~~ 389 (544)
.+...+.+++++.............+... ......+.....+.++.++-+++.+|...|.... ...++++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 99999999999985444433221111111 1111222334678888999999999998887655 88999999
Q ss_pred CCCCCCChhhhcCCCCcE-EEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCC
Q 009079 390 NSIQELPPELSSCASLQT-LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468 (544)
Q Consensus 390 ~~l~~l~~~~~~~~~L~~-L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 468 (544)
|.+.++|..+..+..+.+ +.+++|. .+..+..++.+++|..|++++|-+.+++.+ +..+..|+.++++.|++... |
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~-isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P 474 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNK-ISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-P 474 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCc-cccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-h
Confidence 999999988766666544 4444444 455666789999999999999999998876 66677899999999977655 3
Q ss_pred CCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccccccc
Q 009079 469 PPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 469 ~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~~ 537 (544)
..+.-...|+.+-.++|+++.++.. +.++..|.+||+.+|.+..+|+.++++++|+.|+++||+|+.+.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCH
Confidence 3345556677777788899988655 88899999999999999999999999999999999999998553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-46 Score=412.54 Aligned_cols=500 Identities=27% Similarity=0.304 Sum_probs=314.8
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCccc-chhHhh-cCCCCCCEEEcCCCCCC-Ccchh
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSHNKLS-ELPAA 86 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~-~~~~~L~~L~l~~~~~~-~l~~~ 86 (544)
.++.||++++.+....+..+.. +++|+.|++++|.+. .+|..+ ..+++|++|++++|.++ .+|.
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~------------l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~- 136 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFR------------LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR- 136 (968)
T ss_pred cEEEEEecCCCccccCChHHhC------------CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-
Confidence 4666666666655332222222 455666666666665 555433 36666666666666655 2332
Q ss_pred hhCCCCccEEEccCCccc-cCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCCCce
Q 009079 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS 163 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~ 163 (544)
..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|+
T Consensus 137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 34556666666666655 44555666666666666666654 45555666666666666666554 4455566666666
Q ss_pred EEEecCCccccccchhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCc
Q 009079 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA 241 (544)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~ 241 (544)
.|++++|.+.......++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 6666666665444444566666666666666653 34555666666666666666555 345555566666666666666
Q ss_pred CC-cCchhhhCCCCCCEEECCCCcCcccchhc--ccccccEEEccCCCCCC-CCccccCCCCcceeccCCCCCccccccc
Q 009079 242 LS-ALPAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL 317 (544)
Q Consensus 242 ~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 317 (544)
+. .+|..+..+++|+.|++++|.+....... ...+|+.|++++|.+.+ +|..+..+++|+.+++++|.+.......
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 55 44555666666666666666655332221 12336666666666654 5555566666666666666553211100
Q ss_pred cCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC-CCchhhccCCCccEEEcCCCCCCC-C
Q 009079 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-L 395 (544)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l 395 (544)
+.. . ..+.......... ...........+.++.+++.+|.+. .+|..+..++.|+.+++++|.+++ +
T Consensus 376 ~~~--------~-~~L~~L~l~~n~l--~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 376 LCS--------S-GNLFKLILFSNSL--EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred HhC--------c-CCCCEEECcCCEe--cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence 000 0 0000000000000 0000011122357788888888877 566777778888888888888776 5
Q ss_pred ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCc
Q 009079 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475 (544)
Q Consensus 396 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 475 (544)
+..+..+++|+.|++++|.+....+..+ ..++|+.|++++|++.+.....+..+++|+.|++++|.+....+..+..++
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 5556778888888888888776444433 457888888888888876666688888899999999988888888888889
Q ss_pred cCceEeecCCccc-ccCccccCCCCCCeeecCCCCCC-CCCcccccceeeeEeccCCccccc
Q 009079 476 HLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 476 ~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~l~l~~n~~~~ 535 (544)
+|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+.+
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999887 56777888899999999999988 678888888899999999998875
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.3e-45 Score=401.04 Aligned_cols=477 Identities=27% Similarity=0.340 Sum_probs=393.0
Q ss_pred cCccEEecccCccc-chhHhhcCCCCCCEEEcCCCCCC-Ccchhh-hCCCCccEEEccCCccc-cCCccccccCCccEEE
Q 009079 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKFD 120 (544)
Q Consensus 45 ~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~ 120 (544)
.+++.|+++++.+. .++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++ .+|. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 47999999999887 56778999999999999999987 787755 49999999999999887 4453 4688999999
Q ss_pred cCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCC-
Q 009079 121 CSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN- 197 (544)
Q Consensus 121 l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 197 (544)
+++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.......+..+++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 9999987 77888999999999999999876 77888999999999999999988766667899999999999999986
Q ss_pred CCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCcccchh-cc-
Q 009079 198 GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-AC- 273 (544)
Q Consensus 198 ~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~-~~- 273 (544)
.+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+. ..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 67889999999999999999887 67888999999999999999987 6788899999999999999998754333 22
Q ss_pred cccccEEEccCCCCCC-CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009079 274 QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (544)
Q Consensus 274 ~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (544)
..+|+.|++++|.+.+ .|..+..+++|+.+++++|.+.... |....... .+............ .....
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------p~~l~~~~-~L~~L~Ls~n~l~~--~~p~~ 375 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--------PKNLGKHN-NLTVLDLSTNNLTG--EIPEG 375 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--------ChHHhCCC-CCcEEECCCCeeEe--eCChh
Confidence 2459999999999887 6777899999999999999875321 11111000 00000000000000 00011
Q ss_pred hcccccceeeecCCCccC-CCchhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCC
Q 009079 353 TRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430 (544)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 430 (544)
......++.+++++|.+. .+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++...+..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 112356788888888877 677778888999999999998875 777888999999999999999887766678899999
Q ss_pred EEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc-ccCccccCCCCCCeeecCCCC
Q 009079 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNS 509 (544)
Q Consensus 431 ~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~ 509 (544)
+|++++|++.+.....+ ..++|+.|++++|+++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 99999999876444433 4689999999999999998889999999999999999987 788889999999999999999
Q ss_pred CC-CCCcccccceeeeEeccCCccccc
Q 009079 510 LQ-SIPEVTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 510 l~-~l~~~l~~~~~L~~l~l~~n~~~~ 535 (544)
++ .+|+.+..+++|+.|++++|.+.+
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccc
Confidence 99 568889999999999999999975
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.2e-43 Score=314.75 Aligned_cols=457 Identities=28% Similarity=0.403 Sum_probs=346.9
Q ss_pred HHHhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcc
Q 009079 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (544)
Q Consensus 5 ~~~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~ 84 (544)
++....+.+++.+.+.+..+|+.+.. ...+..++.+++++.++|+.+..+..++.+++++|.+..++
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~ 130 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP 130 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC
Confidence 34455667777777777777766655 36677788888888888888888888888888888888887
Q ss_pred hhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceE
Q 009079 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (544)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 164 (544)
+.++.+..|+.++..+|++..+|.++..+.+|..+++.+|.++.+|...-+++.|+++++..|-++.+|+.++.+.+|+.
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence 88888888888888888888888888888888888888888887777666688888888888888888888888888888
Q ss_pred EEecCCccccccchhhcCccccceEEcCCCcCCCCcccc-cCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC
Q 009079 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (544)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 243 (544)
|++..|++..++. |.+|..|+++.++.|++.-+|... ..++++..||+.+|++..+|..+--+++|+.+++++|.++
T Consensus 211 LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 211 LYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred HHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence 8888888887774 788888888888888887777554 4778888888888888888887777788888888888888
Q ss_pred cCchhhhCCCCCCEEECCCCcCcccchhccccc----ccEEEc-------cCC---CCCC--CCc----cccCCCCccee
Q 009079 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL-------SNN---SLSG--LPP----EIGKMTTLRKL 303 (544)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~----L~~L~l-------~~~---~l~~--l~~----~l~~~~~L~~L 303 (544)
.+|..++++ +|+.|-+.+|.+..+........ |++|.= +.. .-+. .+. ......+.+.+
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 888888888 88888888887765543322211 222211 000 0000 011 11222334445
Q ss_pred ccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCcc
Q 009079 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (544)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~ 383 (544)
++++-+++.+|+.+|.. ....-+..++++++.+.++|..+..+..+.
T Consensus 368 ~~s~~qlt~VPdEVfea---------------------------------~~~~~Vt~VnfskNqL~elPk~L~~lkelv 414 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEA---------------------------------AKSEIVTSVNFSKNQLCELPKRLVELKELV 414 (565)
T ss_pred cccccccccCCHHHHHH---------------------------------hhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence 55555555444443322 111236788999999999999887766554
Q ss_pred -EEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcc
Q 009079 384 -KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (544)
Q Consensus 384 -~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 462 (544)
.+.++++.++-+|..++.+++|..|++++|-+.+++.+ ++.+..|+.++++.|++..++.. ++....++.+-.++|+
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchHH-HhhHHHHHHHHhcccc
Confidence 46667777777888899999999999999999998876 57788899999999999888753 5666678888888899
Q ss_pred cCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCC
Q 009079 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS 512 (544)
Q Consensus 463 l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~ 512 (544)
+..+.+..+.+|.+|+.||+.+|.+..+|..++++++|++|++.||+++.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence 99999998999999999999999999999999999999999999999983
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-38 Score=292.30 Aligned_cols=378 Identities=25% Similarity=0.352 Sum_probs=229.8
Q ss_pred CccEEecccCcccchhH-hhcCC--CCCCEEEcCCCCCCCc-chhhhCCCCccEEEccCCccccCCccccccCCccEEEc
Q 009079 46 DLQKLILAHNNIEKLKE-DLRNL--PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~~-~~~~~--~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l 121 (544)
+-+-|++++..++.+.. .+..+ +.-+.|++++|.+..+ +..|.++++|+.+++.+|.++.+|....-..+|+.|++
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 35678888888875532 33332 2345689998888866 34678889999999988888888877666777889999
Q ss_pred CCCCCccCC-cccccCcCCCEEEcCCCccccCCc-cccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCC
Q 009079 122 SSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (544)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (544)
..|.|+.+. ..+..++.|++||++.|.+.+++. .|..-.++++|++++|.|+.+..+.|..+.+|..|.++.|+++.+
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 888888665 357778888888888888887764 355557888888888888888888888888888888888888777
Q ss_pred c-ccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccc--
Q 009079 200 P-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ-- 274 (544)
Q Consensus 200 ~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-- 274 (544)
| ..|..+++|+.|++..|++..+ -..|+++++|+.+.+..|.+..+ ..+|..+.++++|+++.|++..+...+..
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 6 4566677788888777776644 24566677777777777776655 33466667777777766666554333221
Q ss_pred ccccEEEccCCCCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhh
Q 009079 275 LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353 (544)
Q Consensus 275 ~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
..|+.|+++.|.|..+ ++.++.+++|+.|++++|.++.++..
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~------------------------------------- 335 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG------------------------------------- 335 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChh-------------------------------------
Confidence 1134444444433331 22233333344444433333322211
Q ss_pred cccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCC---CCHHHHhCCCCC
Q 009079 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD---WPDAILTSLSSL 429 (544)
Q Consensus 354 ~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~---~~~~~l~~~~~L 429 (544)
.+..+..|++|.++.|.+..+.+. |..+.+|++|||+.|.+.- -....|.++++|
T Consensus 336 ---------------------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 336 ---------------------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred ---------------------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 111233455555555555443322 4444555555555554331 122334445555
Q ss_pred CEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEee
Q 009079 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (544)
Q Consensus 430 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 482 (544)
+.|++.||++..++..+|.+++.|+.|++.+|-+..+++.+|..+ .|++|.+
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 555555555555555555555555555555555555555555554 4554443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-37 Score=292.07 Aligned_cols=362 Identities=26% Similarity=0.361 Sum_probs=217.8
Q ss_pred EEEcCCCCCccCC-cccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcC
Q 009079 118 KFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (544)
Q Consensus 118 ~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (544)
+|++++|++..+. ..|.++++|+++++..|.++.+|.......+|+.|++..|.|+.+....+..++.|+.|+++.|.+
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 3444444444332 123344444444444444444444433334455555555555555555555555555555555555
Q ss_pred CCCcc-cccCCCceeEEEccCCccccCC-cCCccCCCCCEEEccCCcCCcCchh-hhCCCCCCEEECCCCcCcccchhcc
Q 009079 197 NGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC 273 (544)
Q Consensus 197 ~~~~~-~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~l~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~~ 273 (544)
.+++. .+..-.++++|++++|.|+.+. ..|..+.+|..+.++.|+++.+|.. |..+++|+.|++..|+|..+....+
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 54442 2333344555555555555442 3344555555555555555555433 3345666666666655544322222
Q ss_pred c--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhh
Q 009079 274 Q--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (544)
Q Consensus 274 ~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
. .+++.+.+..|.+..+.+ .|..+.++++|++..|+++.+..
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~----------------------------------- 286 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE----------------------------------- 286 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-----------------------------------
Confidence 1 235555555555555433 36667777777777776644321
Q ss_pred hhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCC
Q 009079 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (544)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 429 (544)
.+++++..|+.|++++|.|..+ +++++.+++|+.|+|+.|.|+.++.+.|..+..|
T Consensus 287 -----------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 287 -----------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred -----------------------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 2455567777777777777764 3456777788888888888888777777777888
Q ss_pred CEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC---CCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeec
Q 009079 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE---NPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDL 505 (544)
Q Consensus 430 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l 505 (544)
++|+|++|++..+...+|.++++|+.||+++|.++... ...|.++++|+.|++.+|++++||.. |..++.|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 88888888887777777778888888888887665432 34567778888888888888877644 445788888888
Q ss_pred CCCCCCCC-CcccccceeeeEeccCCcccccccc
Q 009079 506 SQNSLQSI-PEVTYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 506 ~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
.+|.+.+| |+.+..+ .|++|.++.-+|-++||
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 88888777 6666666 77777776666655554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-38 Score=310.72 Aligned_cols=455 Identities=27% Similarity=0.333 Sum_probs=377.8
Q ss_pred eeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhCCC
Q 009079 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (544)
Q Consensus 13 ~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~ 91 (544)
.+|.|..++.-||..++.. ..+..|+++.|.+-..| +...+.-+|+.|++++|.+...|..+..++
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~ 68 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS 68 (1081)
T ss_pred CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence 4688888899999888764 44888999998776544 345556679999999999999999999999
Q ss_pred CccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCC-
Q 009079 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN- 170 (544)
Q Consensus 92 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~- 170 (544)
+|+.|+++.|.+..+|....++.+|+++++.+|.+..+|..+..+++|+.|+++.|.+..+|..+..+..++.+.+++|
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence 9999999999999999889999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccchhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079 171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (544)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l 249 (544)
.+...+ . ..++.+++..+.+. .++..+..++. .+++.+|.+. ...+..+++|+.+....|.+..+.
T Consensus 149 ~~~~lg-----~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~--- 215 (1081)
T KOG0618|consen 149 KIQRLG-----Q-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE--- 215 (1081)
T ss_pred hhhhhc-----c-ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEE---
Confidence 222222 2 22778888888774 45556666665 7999999888 246778899999999988887552
Q ss_pred hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHH
Q 009079 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (544)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (544)
-.-++++.|+.+.|.++.......+..+++++++.+++..+|.++..|.+|+.+++..|.+..++...+..
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~--------- 286 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRI--------- 286 (1081)
T ss_pred ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhh---------
Confidence 24578999999999999777777777799999999999999999999999999999999987665544332
Q ss_pred hhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhh----------
Q 009079 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL---------- 399 (544)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~---------- 399 (544)
.+++.+.+..|.+..+|+.......|++|++..|++..+|+.+
T Consensus 287 ---------------------------~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 287 ---------------------------TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred ---------------------------hhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence 3556666677777777777776777777777777776655321
Q ss_pred ----------------hcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCccc
Q 009079 400 ----------------SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (544)
Q Consensus 400 ----------------~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l 463 (544)
...+.|+.|.+.+|.+++--...+.++++|++|+|++|++..+++..+.+++.|++|++++|++
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 1235688889999999987777789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccCCcc
Q 009079 464 SLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSINTEL 532 (544)
Q Consensus 464 ~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~~n~ 532 (544)
+.+. .+++.+..|++|...+|.+...| .+..+++|+.+|++.|.++ .+|+.... +.|+.||++||.
T Consensus 420 ~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 420 TTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 9987 77899999999999999999999 6789999999999999998 44654333 899999999998
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-35 Score=290.52 Aligned_cols=459 Identities=26% Similarity=0.338 Sum_probs=287.5
Q ss_pred hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhh
Q 009079 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI 87 (544)
Q Consensus 8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~ 87 (544)
.-.++.||+|+|++.+.|..+.. +..|+.|+++.|-+..+|.+..++++|+++.|.+|....+|+.+
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~-------------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITL-------------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred eeeeEEeeccccccccCCchhhh-------------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH
Confidence 33455555555555555544433 24455555555555555555555555555555555555555555
Q ss_pred hCCCCccEEEccCCccccCCccccccCCccEEEcCCC-CCccCCcccccCcCCCEEEcCCCccc-cCCccccCCCCceEE
Q 009079 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKL 165 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L 165 (544)
..+++|++|+++.|.+..+|..+..+..++.+..++| .+..++. .. ++++++..+.+. .++..+..+.. .|
T Consensus 111 ~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred HhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhhe--ee
Confidence 5555555555555555555555555555555555554 1112211 11 444444444433 23333333333 58
Q ss_pred EecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcC
Q 009079 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (544)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l 245 (544)
++++|.+.... +..+..|+.+....|++..+. ..-++++.|+.+.|.++.+. ......+|+.++++.+.+..+
T Consensus 184 dLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~~l 256 (1081)
T KOG0618|consen 184 DLRYNEMEVLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLSNL 256 (1081)
T ss_pred ecccchhhhhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeec-cccccccceeeecchhhhhcc
Confidence 88888776222 566677777777777765442 22357888888888887442 223356899999999999999
Q ss_pred chhhhCCCCCCEEECCCCcCcccchhccccc-ccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchH
Q 009079 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324 (544)
Q Consensus 246 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 324 (544)
|+++..+.+|+.++...|.+..++...+... |+.+.+..|.+..+|+.......|++|++..|.+..++...+... +
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~-~- 334 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL-N- 334 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhh-h-
Confidence 9999999999999999999988888777655 999999999999999988889999999999999987765332211 1
Q ss_pred HHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchh-hccCCCccEEEcCCCCCCC-CChhhhcC
Q 009079 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQE-LPPELSSC 402 (544)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~l~~-l~~~~~~~ 402 (544)
..++.+..+.+.+...|.. -...+.|+.|.+.+|.+++ .-+.+...
T Consensus 335 --------------------------------~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 335 --------------------------------ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred --------------------------------HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 1122333333333333321 1124567777777777776 22346677
Q ss_pred CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEee
Q 009079 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (544)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 482 (544)
++||.|+|++|.+..++...+.+++.|++|+++||++..++ .....++.|+.|...+|++.... .+..++.|+.+|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEec
Confidence 77777777777777777777777777777777777777776 34667777777777777776654 5677777778888
Q ss_pred cCCccc--ccCccccCCCCCCeeecCCCCCCCC-CcccccceeeeEeccCCc
Q 009079 483 RRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEVTYIFVMLQKKSINTE 531 (544)
Q Consensus 483 s~n~l~--~i~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n 531 (544)
|.|.++ .+|.... .++|+.||++||.-... ...+..+.++...++.-+
T Consensus 460 S~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 777776 3333222 26788888888764432 333455555555555444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6e-34 Score=269.11 Aligned_cols=379 Identities=28% Similarity=0.417 Sum_probs=305.3
Q ss_pred hhcceeEcCCCccc--ccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchh
Q 009079 9 RTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (544)
Q Consensus 9 ~~~~~l~ls~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 86 (544)
..++-+|+++|... .+|.++.+ .+.++.|.+...++..+|+.++.+.+|++|.+.+|++..+-..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE 73 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE 73 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh
Confidence 44667888888876 67776665 5778899999999999999999999999999999998887778
Q ss_pred hhCCCCccEEEccCCccc--cCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCcc-ccCCCCce
Q 009079 87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMS 163 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~ 163 (544)
++.++.|+.+.+..|++. .+|..+..+..|+.|+++.|+++..|..+..-+++-.|++++|+++++|.. +.++..|-
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 888899999999988876 788888899999999999999999998888888999999999999988865 56778888
Q ss_pred EEEecCCccccccchhhcCccccceEEcCCCcCCCCc-ccccCCCceeEEEccCCccc--cCCcCCccCCCCCEEEccCC
Q 009079 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNN 240 (544)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~l~l~~~ 240 (544)
.|+++.|++..++.. ...+..|+.|.+++|.+..+. ..+.++++|+.|.++++.-+ .+|..+..+.+|+.++++.|
T Consensus 154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 899999999888877 778888999999998875432 34566788888999988766 78889999999999999999
Q ss_pred cCCcCchhhhCCCCCCEEECCCCcCcccchhccccc-ccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccC
Q 009079 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319 (544)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 319 (544)
.+..+|..+.++++|+.|++++|.|+++........ +++|+++.|.++.+|..+..++.|+.|.+.+|.+.
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-------- 304 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-------- 304 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------
Confidence 999999999999999999999999998877665544 99999999999999999999999999988888752
Q ss_pred CCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhh
Q 009079 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399 (544)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~ 399 (544)
+..||++++.+..|+.+...+|.+.-+|+.+
T Consensus 305 -------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 305 -------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred -------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 3456777777777777777777777777778
Q ss_pred hcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (544)
Q Consensus 400 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 459 (544)
+.|+.|+.|.|+.|.+..++.+ +.-++-|++|++..|.---.++.--..-++|+.-++.
T Consensus 336 cRC~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 8888888888887777666544 4667778888887776333222211122445554444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-33 Score=266.85 Aligned_cols=362 Identities=24% Similarity=0.355 Sum_probs=271.6
Q ss_pred ccCCccEEEcCCCCCc--cCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceE
Q 009079 112 SATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189 (544)
Q Consensus 112 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 189 (544)
-++-.+-+++++|.++ .+|.....+++++.|.+....+..+|+.++.+++|++|.++.|.+..+... +..+++|+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHH
Confidence 4556677888888887 778888888889999999888888998888889999998888887766443 6666677777
Q ss_pred EcCCCcCC--CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchh-hhCCCCCCEEECCCCcCc
Q 009079 190 IASKNLLN--GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 266 (544)
Q Consensus 190 ~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~ 266 (544)
.+..|.+. ++|..+..+..|+.||+|.|++...|..+...+++-.|++++|.|..+|.. +-++..
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD------------ 151 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD------------ 151 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh------------
Confidence 66666663 456666666666666666666666665555555555556665555555543 223333
Q ss_pred ccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchh
Q 009079 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346 (544)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (544)
|-.||+++|.+..+|+.+.++.+|+.|++++|++.........
T Consensus 152 ----------LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP--------------------------- 194 (1255)
T KOG0444|consen 152 ----------LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP--------------------------- 194 (1255)
T ss_pred ----------HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc---------------------------
Confidence 4455555555555666666666666666666665322111100
Q ss_pred hhhhhhhcccccceeeecCCCc--cCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh
Q 009079 347 DLITMATRLSVTSKELSLEGMN--LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424 (544)
Q Consensus 347 ~~~~~~~~~~~~l~~l~l~~~~--~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 424 (544)
..++++.+.+++.+ +..+|..+-.+.+|..+|++.|++..+|.++..+++|+.|+|++|+|+++.... .
T Consensus 195 --------smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~ 265 (1255)
T KOG0444|consen 195 --------SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-G 265 (1255)
T ss_pred --------cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-H
Confidence 11244555555543 337888888888999999999999999999999999999999999999876543 5
Q ss_pred CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC-CCCCCCCccCceEeecCCcccccCccccCCCCCCee
Q 009079 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503 (544)
Q Consensus 425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L 503 (544)
...+|++|+++.|+++.++.. +..+++|+.|...+|+++..+ |..++.+..|+.+..++|.+.-+|+++..|+.|+.|
T Consensus 266 ~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred HHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence 668899999999999988754 778999999999999887655 566888999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcccccceeeeEeccCCccc
Q 009079 504 DLSQNSLQSIPEVTYIFVMLQKKSINTELV 533 (544)
Q Consensus 504 ~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~ 533 (544)
.+++|++..+|+.+-.++-|+.||+..|+-
T Consensus 345 ~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 345 KLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cccccceeechhhhhhcCCcceeeccCCcC
Confidence 999999999999999999999999998863
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=3e-21 Score=212.70 Aligned_cols=239 Identities=22% Similarity=0.295 Sum_probs=138.1
Q ss_pred HhhcCCCCCCEEEcCCCCCC-------CcchhhhCC-CCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCccc
Q 009079 62 EDLRNLPLLTVLNVSHNKLS-------ELPAAIGEL-HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133 (544)
Q Consensus 62 ~~~~~~~~L~~L~l~~~~~~-------~l~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 133 (544)
.+|.++++|+.|.+..+... .+|..+..+ ++|+.|.+.++.++.+|..+ ...+|+.|+++++.+..++..+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 45677777777777544211 345555444 34777777777776676655 4567777777777777666666
Q ss_pred ccCcCCCEEEcCCCc-cccCCccccCCCCceEEEecCCc-cccccchhhcCccccceEEcCCCc-CCCCcccccCCCcee
Q 009079 134 GRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLI 210 (544)
Q Consensus 134 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~ 210 (544)
..+++|+.++++++. +..+| .+..+++|++|++++|. +..++. .+..+++|+.|++++|. ++.+|..+ ++++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 667777777776654 34444 35566777777776653 333333 35666677777776653 45555443 566677
Q ss_pred EEEccCCccc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccch---------hcccccccEE
Q 009079 211 RLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV---------EACQLRLSVL 280 (544)
Q Consensus 211 ~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~---------~~~~~~L~~L 280 (544)
.|++++|... .+|. ...+|+.|+++++.+..+|..+ .+++|+.|.+.++....+.. .....+|+.|
T Consensus 708 ~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 708 RLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 7777666322 3332 1345666777777666666543 45666666665533221110 0112346666
Q ss_pred EccCCCC-CCCCccccCCCCcceeccCCC
Q 009079 281 DLSNNSL-SGLPPEIGKMTTLRKLLLTGN 308 (544)
Q Consensus 281 ~l~~~~l-~~l~~~l~~~~~L~~L~l~~~ 308 (544)
++++|.. ..+|..++++++|+.|++++|
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 6666633 335555666666666666655
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.1e-21 Score=213.95 Aligned_cols=322 Identities=24% Similarity=0.292 Sum_probs=177.0
Q ss_pred ecCccEEecccCccc-------chhHhhcCCC-CCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCC
Q 009079 44 AVDLQKLILAHNNIE-------KLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~-------~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~ 115 (544)
+.+|+.|.+..+... .+|+.+..++ +|+.|.+.++.+..+|..+ ...+|+.|++.++.+..++..+..+++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence 445666555443211 2444444443 3666666666555555544 345666666666666555555555666
Q ss_pred ccEEEcCCCC-CccCCcccccCcCCCEEEcCCCc-cccCCccccCCCCceEEEecCC-ccccccchhhcCccccceEEcC
Q 009079 116 LVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIAS 192 (544)
Q Consensus 116 L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~ 192 (544)
|+.|+++++. +..+| .++.+++|++|++++|. +..+|..+..+++|+.|++++| .+..++.. .++++|+.|+++
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Ls 712 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLS 712 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCC
Confidence 6666665543 33444 34555666666666553 3355555556666666666554 33344432 145556666666
Q ss_pred CCcC-CCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCc--------hhhhCCCCCCEEECCCC
Q 009079 193 KNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--------AELGKLSKLGTLDLHSN 263 (544)
Q Consensus 193 ~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~--------~~l~~~~~L~~L~l~~~ 263 (544)
+|.. ..+|.. .++|+.|+++++.+..+|..+ .+++|+.|.+.++....+. ......++|+.|++++|
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 5532 223321 234566666666665555443 3455555555543221111 11123356666666665
Q ss_pred c-Ccccchhccc-ccccEEEccCC-CCCCCCccccCCCCcceeccCCCCC-ccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079 264 Q-LKEYCVEACQ-LRLSVLDLSNN-SLSGLPPEIGKMTTLRKLLLTGNPL-RTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (544)
Q Consensus 264 ~-i~~~~~~~~~-~~L~~L~l~~~-~l~~l~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (544)
. +..+|..... .+|+.|++++| .+..+|..+ .+++|+.|++++|.. ..++
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p------------------------- 842 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP------------------------- 842 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-------------------------
Confidence 3 2334433222 23666666665 344455544 567777777777642 1110
Q ss_pred ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCC-CCCCChhhhcCCCCcEEEccCC
Q 009079 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN 413 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~ 413 (544)
....+++.++++++.++.+|..+..+++|+.|++++|+ +..+|.....+++|+.+++++|
T Consensus 843 --------------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 843 --------------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred --------------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 11235677777777777777777778888888888764 6667777777788888888877
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=3.7e-25 Score=198.91 Aligned_cols=410 Identities=20% Similarity=0.251 Sum_probs=239.0
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhhhC
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (544)
..+|+++.+++++|+++.. .-..|+|..|+|+.+|+ +|+.+++|+.|||++|+|+.| |++|.+
T Consensus 49 ~~VdCr~~GL~eVP~~LP~---------------~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPP---------------ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred ceEEccCCCcccCcccCCC---------------cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 4689999999999988854 48899999999999985 899999999999999999977 679999
Q ss_pred CCCccEEEccC-CccccCCcc-ccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccCCc-cccCCCCceEE
Q 009079 90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (544)
Q Consensus 90 ~~~L~~L~l~~-~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L 165 (544)
+++|..|-+.+ |.|+++|.. |+.+..|+-|.+.-|++.-++ +.+..++++..|.+.+|.+..+++ .+..+..++.+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 99988877766 799999876 899999999999888888555 467889999999999999888876 57777777777
Q ss_pred EecCCcccc------------ccchhhcCccccceEEcCCCcCCCCcc-cccC-CCceeEEEccCCccc-cCC-cCCccC
Q 009079 166 DVEGNKLTV------------LSNNLIASWTMLTELIASKNLLNGMPE-TIGS-LSRLIRLDLHQNRIL-SIP-SSISGC 229 (544)
Q Consensus 166 ~l~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~-~~~L~~L~l~~~~~~-~l~-~~~~~~ 229 (544)
.+..+++.. .....++.........+.+.++..++. .+.. +.++..--.+.+... ..| ..|..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 776665220 111112222222222222222221110 0000 001100001111111 111 124445
Q ss_pred CCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccccc--ccEEEccCCCCCC-CCccccCCCCcceecc
Q 009079 230 CSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG-LPPEIGKMTTLRKLLL 305 (544)
Q Consensus 230 ~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~--L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l 305 (544)
++|+++++++|.++.+ +.+|.+...+++|.+..|++..+...++..- |+.|++.+|+|+. .|..|.....|..|++
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 5555555555555544 3345555555555555555555544444322 5555555555555 2334555556666666
Q ss_pred CCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCC----c--------
Q 009079 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI----P-------- 373 (544)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i----~-------- 373 (544)
-.|++.- .+. +.++..|+....... ..-.+.+..++.+.+++..+... |
T Consensus 354 ~~Np~~C-------nC~---l~wl~~Wlr~~~~~~---------~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s 414 (498)
T KOG4237|consen 354 LSNPFNC-------NCR---LAWLGEWLRKKSVVG---------NPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTS 414 (498)
T ss_pred ccCcccC-------ccc---hHHHHHHHhhCCCCC---------CCCCCCCchhccccchhccccccccCCccccCCCCC
Confidence 5555421 111 111222211111000 00011111223333333222111 0
Q ss_pred -hhhccCCCc-cEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079 374 -SEIWEAGEI-TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (544)
Q Consensus 374 -~~~~~~~~L-~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 451 (544)
..-..++-+ +....++..++.+|..+ .....++++.+|.++.++.+ .+.+| .+++++|++..+....|.++.
T Consensus 415 ~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~t 488 (498)
T KOG4237|consen 415 SPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMT 488 (498)
T ss_pred CCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchh
Confidence 000112222 23445555555566532 23567888999999988877 34666 889999999888877888899
Q ss_pred CcceEecCCc
Q 009079 452 MLQILDLSYN 461 (544)
Q Consensus 452 ~L~~L~l~~n 461 (544)
+|..|-++.|
T Consensus 489 ql~tlilsyn 498 (498)
T KOG4237|consen 489 QLSTLILSYN 498 (498)
T ss_pred hhheeEEecC
Confidence 9888888754
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=5.1e-22 Score=203.00 Aligned_cols=256 Identities=24% Similarity=0.268 Sum_probs=177.8
Q ss_pred cceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcC
Q 009079 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265 (544)
Q Consensus 186 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 265 (544)
-..|+++++.++.+|..+. ++|+.|++.+|.++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 4567777777777776554 3677777777777777642 46777777777777777642 35777777777777
Q ss_pred cccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccch
Q 009079 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (544)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (544)
..++. ....|+.|++++|.+..+|.. .++|+.|++++|.+..++.
T Consensus 275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~------------------------------ 319 (788)
T PRK15387 275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA------------------------------ 319 (788)
T ss_pred hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC------------------------------
Confidence 76654 224477777777777776652 3567778888777765432
Q ss_pred hhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhC
Q 009079 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425 (544)
Q Consensus 346 ~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 425 (544)
.+..++.+++++|.+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.++.++..
T Consensus 320 ---------lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---- 380 (788)
T PRK15387 320 ---------LPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---- 380 (788)
T ss_pred ---------CcccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc----
Confidence 112355666677777766642 24688888888888887753 35677888888888776532
Q ss_pred CCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeec
Q 009079 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505 (544)
Q Consensus 426 ~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l 505 (544)
..+|+.|++++|++..++.. .++|+.|++++|.++.+.. ...+|+.|++++|.++.+|..+..+++|+.|++
T Consensus 381 ~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 381 PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc----chhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence 25788888888888776542 3578888888888776532 134677888888888888888778888888888
Q ss_pred CCCCCC
Q 009079 506 SQNSLQ 511 (544)
Q Consensus 506 ~~n~l~ 511 (544)
++|+++
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 888877
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=7.6e-22 Score=201.70 Aligned_cols=258 Identities=30% Similarity=0.374 Sum_probs=218.0
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhC
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (544)
.-..|||+.+.++.+|..+. .+++.|++.+|.++.+|.. .++|++|++++|+++.+|..
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--- 260 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--- 260 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---
Confidence 45689999999999997664 3599999999999998853 58999999999999998753
Q ss_pred CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecC
Q 009079 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (544)
Q Consensus 90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 169 (544)
.++|+.|++++|.++.+|.. .++|+.|++++|+++.+|.. .++|+.|++++|.+..+|.. ..+|+.|++++
T Consensus 261 p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 261 PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYN 331 (788)
T ss_pred ccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---ccccccccccc
Confidence 46899999999999988763 35788999999999988763 47899999999999988753 34688999999
Q ss_pred CccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (544)
Q Consensus 170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l 249 (544)
|.++.++. ...+|+.|++++|.+..+|.. .++|+.|++++|.+..+|... .+|+.|++++|.+..+|..
T Consensus 332 N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l- 400 (788)
T PRK15387 332 NQLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVL- 400 (788)
T ss_pred Cccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCcccc---cccceEEecCCcccCCCCc-
Confidence 99987764 125799999999999988763 357889999999999887643 5799999999999988753
Q ss_pred hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCcc
Q 009079 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (544)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~ 312 (544)
.++|+.|++++|.+..++.. ...|+.|++++|.++.+|..+..++.++.+++++|++..
T Consensus 401 --~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 --PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred --ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 36899999999999988753 346899999999999999999999999999999999864
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-22 Score=181.99 Aligned_cols=388 Identities=23% Similarity=0.303 Sum_probs=262.6
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCC-CCCCCcch-
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSH-NKLSELPA- 85 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~-~~~~~l~~- 85 (544)
....+++|..|+|+.||++.|.. .++||+|++|.|.|+.| |++|..++.+..|-+.+ |+|+++|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~------------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKT------------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcceEEEeccCCcccCChhhccc------------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 35678999999999999999887 45699999999999977 57999999998877766 89999987
Q ss_pred hhhCCCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCccc-------------
Q 009079 86 AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT------------- 150 (544)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~------------- 150 (544)
+|.++..|+-|.+.-|.+.-++ +.|..+++|..|.+.+|.+..++. .+..+..++.+.+..+.+-
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 8999999999999999888554 459999999999999999998886 7888889999888777532
Q ss_pred cCCccccCCCCceEEEecCCccccccchhhcCccccceE---EcCCCcC-CCCc-ccccCCCceeEEEccCCccccC-Cc
Q 009079 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL---IASKNLL-NGMP-ETIGSLSRLIRLDLHQNRILSI-PS 224 (544)
Q Consensus 151 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~-~~~~-~~l~~~~~L~~L~l~~~~~~~l-~~ 224 (544)
..+-.++.+.-..-..+.+.++..+....|... ++.+ -.+.+.. ...| ..|..+++|+++++++|+++.+ +.
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 112223333333333444445555555444332 2222 1122222 2233 3578888999999999998876 45
Q ss_pred CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccccc--ccEEEccCCCCCC------CCcccc
Q 009079 225 SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG------LPPEIG 295 (544)
Q Consensus 225 ~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~--L~~L~l~~~~l~~------l~~~l~ 295 (544)
+|.+...+++|.+..|.+..+ ...|.++..|+.|++.+|+|+.+....+..- |.+|.+-.|.+.- +-+|+.
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence 678888899999999988866 3457888899999999999988877776643 8888887765432 112221
Q ss_pred C-----------CCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079 296 K-----------MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (544)
Q Consensus 296 ~-----------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (544)
. -..++.+.++...+...... .++. ..............+.=+...+
T Consensus 373 ~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~-----~~ee-----------------~~~~~s~~cP~~c~c~~tVvRc 430 (498)
T KOG4237|consen 373 KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG-----GPEE-----------------LGCLTSSPCPPPCTCLDTVVRC 430 (498)
T ss_pred hCCCCCCCCCCCCchhccccchhccccccccC-----Cccc-----------------cCCCCCCCCCCCcchhhhhHhh
Confidence 1 11233333333322211100 0000 0000000001111112234455
Q ss_pred CCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (544)
Q Consensus 365 ~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 437 (544)
++..+..+|+.+ .....++.+.+|.++.+|.. .+.+| .+++++|.+..+....|.++..|.+|.+++|
T Consensus 431 Snk~lk~lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 431 SNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccchhhcCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 666666666665 34567788888888888876 55677 8899999888887777888888888888765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=6.6e-20 Score=188.92 Aligned_cols=246 Identities=25% Similarity=0.380 Sum_probs=166.2
Q ss_pred CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 125 (544)
+...|++++..++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 45667777776666665443 467777777777776665443 467777777777776665442 357777777777
Q ss_pred CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (544)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (544)
+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.++.++... .+.|+.|++++|.+..+|..+.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l---p~sL~~L~Ls~N~Lt~LP~~l~- 324 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNSLTALPETLP- 324 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc---hhhHHHHHhcCCccccCCcccc-
Confidence 776665443 467777777777776665543 46777777777777655431 1357777777777776665432
Q ss_pred CCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (544)
Q Consensus 206 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~ 285 (544)
++|+.|++++|.++.+|..+ +++|+.|++++|.+..+|..+ .++|+.|++++|.++.++... ...|+.|++++|
T Consensus 325 -~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N 398 (754)
T PRK15370 325 -PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL-PAALQIMQASRN 398 (754)
T ss_pred -ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccC
Confidence 57788888888777776655 367888888888877777644 367888888888888776653 235788888888
Q ss_pred CCCCCCcccc----CCCCcceeccCCCCCc
Q 009079 286 SLSGLPPEIG----KMTTLRKLLLTGNPLR 311 (544)
Q Consensus 286 ~l~~l~~~l~----~~~~L~~L~l~~~~~~ 311 (544)
++..+|..+. .++.+..+++.+|++.
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8877765443 3467778888888764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=8.9e-20 Score=187.93 Aligned_cols=246 Identities=26% Similarity=0.411 Sum_probs=204.6
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhC
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (544)
....|+++++.++.+|..+. ++++.|++++|.++.+|..+. .+|++|++++|.++.+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~- 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP- 240 (754)
T ss_pred CceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-
Confidence 56889999999999986553 459999999999999987664 599999999999999987654
Q ss_pred CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecC
Q 009079 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (544)
Q Consensus 90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 169 (544)
.+|+.|++++|.+..+|..+. .+|+.|++++|+++.+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++
T Consensus 241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence 479999999999999987764 589999999999998887654 589999999999998886553 5799999999
Q ss_pred CccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (544)
Q Consensus 170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l 249 (544)
|.++.++... .++|+.|++++|.++.+|..+. ++|+.|++++|.++.+|..+ .+.|+.|++++|.+..+|..+
T Consensus 314 N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 314 NSLTALPETL---PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL 386 (754)
T ss_pred CccccCCccc---cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhH
Confidence 9998776532 3689999999999998887663 68999999999999887755 368999999999999998765
Q ss_pred hCCCCCCEEECCCCcCcccchhccc-----ccccEEEccCCCCCC
Q 009079 250 GKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSG 289 (544)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~~~~~~-----~~L~~L~l~~~~l~~ 289 (544)
. ..|+.|++++|++..++..... +.+..+++.+|.+..
T Consensus 387 ~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 387 P--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred H--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 4 3699999999999887654221 347899999998763
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=7.6e-20 Score=145.93 Aligned_cols=164 Identities=29% Similarity=0.503 Sum_probs=95.9
Q ss_pred CceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccE
Q 009079 39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVK 118 (544)
Q Consensus 39 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~ 118 (544)
..++++.+++.|.+++|++..+|..++.+.+|+.|++.+|++..+|..++.+++|+.|++.-|.+..+|..|+.++.|+.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 33444556666666666666666666666666666666666666666666666666666665555556666666666666
Q ss_pred EEcCCCCCc--cCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcC
Q 009079 119 FDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (544)
Q Consensus 119 L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (544)
|++..|++. .+|..|..++.|+.|.+++|.++.+|..++++.+|+.|.++.|. +
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd------------------------l 162 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND------------------------L 162 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc------------------------h
Confidence 666665554 45555555555555555555555555555555555555555554 4
Q ss_pred CCCcccccCCCceeEEEccCCccccCCcCC
Q 009079 197 NGMPETIGSLSRLIRLDLHQNRILSIPSSI 226 (544)
Q Consensus 197 ~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 226 (544)
-++|..++.+..|++|.+.+|+++.+|..+
T Consensus 163 l~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 444555555555555555555555555444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.7e-19 Score=141.44 Aligned_cols=158 Identities=31% Similarity=0.521 Sum_probs=148.0
Q ss_pred HhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchh
Q 009079 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (544)
Q Consensus 7 ~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 86 (544)
.++.++.+.||+|.++.+|+.++. +++|+.|+++.|+++++|.+++.+++|++|++.-|.+..+|..
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~-------------l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAE-------------LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHH-------------hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc
Confidence 467889999999999999988876 5899999999999999999999999999999999999999999
Q ss_pred hhCCCCccEEEccCCccc--cCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceE
Q 009079 87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 164 (544)
|+.++.|+.|++++|++. .+|..|..+..|+.|++++|.+..+|..++++++|+.|.+++|.+-++|+.++.+..|++
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 999999999999999887 789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccccccc
Q 009079 165 LDVEGNKLTVLSN 177 (544)
Q Consensus 165 L~l~~~~~~~~~~ 177 (544)
|.+.+|+++.++.
T Consensus 178 lhiqgnrl~vlpp 190 (264)
T KOG0617|consen 178 LHIQGNRLTVLPP 190 (264)
T ss_pred HhcccceeeecCh
Confidence 9998888877664
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.8e-17 Score=159.29 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=110.4
Q ss_pred hccC-CCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCC----HHHHhCCCCCCEEECCCCCCCcCC--
Q 009079 376 IWEA-GEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWP----DAILTSLSSLSCLKLDNNPLRQVP-- 443 (544)
Q Consensus 376 ~~~~-~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~i~~~~-- 443 (544)
+..+ ++|++|++++|.++. ++..+..+++|++|++++|.+++.. ...+..+++|++|++++|.+.+..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3334 678888888888773 3445667778888888888887522 223455678888888888876432
Q ss_pred --CCccCCCCCcceEecCCcccCCCCCCCCC-----CCccCceEeecCCccc-----ccCccccCCCCCCeeecCCCCCC
Q 009079 444 --SDGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 444 --~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~-----~i~~~~~~~~~L~~L~l~~n~l~ 511 (544)
...+..+++|+.|++++|.+++.....+. ..+.|+.|++++|.++ .+...+..+++|+.+++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 12356678889999988877764333322 2378999999999885 33445556788999999999988
Q ss_pred C-----CCcccccc-eeeeEeccCCccc
Q 009079 512 S-----IPEVTYIF-VMLQKKSINTELV 533 (544)
Q Consensus 512 ~-----l~~~l~~~-~~L~~l~l~~n~~ 533 (544)
. +...+... +.|+++++.+|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 33344445 7889999988875
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=7.2e-17 Score=155.16 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=29.1
Q ss_pred EEcCCCCCC--CcchhhhCCCCccEEEccCCccc-----cCCccccccCCccEEEcCCCCCc
Q 009079 73 LNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (544)
Q Consensus 73 L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~ 127 (544)
|+|..+.+. .....+..+.+|++|+++++.++ .++..+...+.+++++++++.+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 455555544 33334455556666666666653 23334445555666666555443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.47 E-value=9.3e-15 Score=130.62 Aligned_cols=245 Identities=22% Similarity=0.254 Sum_probs=126.5
Q ss_pred cCCCceeEEEccCCccc-----cCCcCCccCCCCCEEEccCCcCC----cCch-------hhhCCCCCCEEECCCCcCcc
Q 009079 204 GSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS----ALPA-------ELGKLSKLGTLDLHSNQLKE 267 (544)
Q Consensus 204 ~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~l~l~~~~~~----~l~~-------~l~~~~~L~~L~l~~~~i~~ 267 (544)
....+++++++++|.+. .+...+...+.|+..++++-... .+|. ++..+|+|+.|++|+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 33445555555555444 22233444445555555543222 2232 35566677777777776542
Q ss_pred cchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhh
Q 009079 268 YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347 (544)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (544)
-... .+-..+.++..|++|.+.+|.+.............+..
T Consensus 107 ~g~~-----------------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------------------- 148 (382)
T KOG1909|consen 107 KGIR-----------------GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------------------- 148 (382)
T ss_pred cchH-----------------HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH---------------------
Confidence 1111 12223567888899999888875543322211110000
Q ss_pred hhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCC----C
Q 009079 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKD----W 418 (544)
Q Consensus 348 ~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~----~ 418 (544)
......+.+.|+.+.+.+|++.+ +...+...+.|+.+.+++|.|.. .
T Consensus 149 ------------------------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a 204 (382)
T KOG1909|consen 149 ------------------------VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA 204 (382)
T ss_pred ------------------------HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH
Confidence 00112224567777777776655 33446666777777777776654 2
Q ss_pred CHHHHhCCCCCCEEECCCCCCCcC----CCCccCCCCCcceEecCCcccCCCCCCCC-----CCCccCceEeecCCccc-
Q 009079 419 PDAILTSLSSLSCLKLDNNPLRQV----PSDGFKDIPMLQILDLSYNIASLPENPPF-----SSLPHLQELYLRRMQLR- 488 (544)
Q Consensus 419 ~~~~l~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~ls~n~l~- 488 (544)
....|..|++|++|+|++|-++.. .+..++.+++|+.++++.|.+...+..+| ...|+|+.|.+.+|.|+
T Consensus 205 l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 205 LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 234466677777777777766532 22334555566666666665555544332 22455555555555544
Q ss_pred ----ccCccccCCCCCCeeecCCCCC
Q 009079 489 ----EAPTDILRLQQLRILDLSQNSL 510 (544)
Q Consensus 489 ----~i~~~~~~~~~L~~L~l~~n~l 510 (544)
.+..++..-+.|+.|+|++|++
T Consensus 285 da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 285 DAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1122233344455555555554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=1.1e-14 Score=137.96 Aligned_cols=206 Identities=30% Similarity=0.376 Sum_probs=147.0
Q ss_pred hHHHHHhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCC
Q 009079 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS 81 (544)
Q Consensus 2 ~~~~~~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 81 (544)
+.+++.+.+-.++.|++..++.+|...+. .. +..-...+++.|.+.++|..+..|..|+.+.++.|.+.
T Consensus 43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~--~~---------ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r 111 (722)
T KOG0532|consen 43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS--YD---------LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR 111 (722)
T ss_pred hHHHHHHhhhcccccccchhhcCCCcccc--cc---------ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence 45777888888888888888877755544 11 23456677888888888877777778888888888888
Q ss_pred CcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCC
Q 009079 82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161 (544)
Q Consensus 82 ~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 161 (544)
.+|.++.++..|++++++.|++..+|..+..++ |+.|-+++|+++.+|..++...+|..|+.+.|.+..+|..++++.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 888888888888888888888877776655544 6777777777777777777777777777777777777777777777
Q ss_pred ceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCcccc
Q 009079 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 221 (544)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 221 (544)
|+.|.++.|.+.+++.. +. .-.|..|+++.|.+..+|-.|..+++|++|-+.+|.+..
T Consensus 191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 77777777776666554 22 234566666666666666666666666666666666553
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=6.4e-14 Score=125.33 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=82.3
Q ss_pred cCcCCCEEEcCCCccccC-----CccccCCCCceEEEecCCcccc----ccchhhcCccccceEEcCCCcCCC-----Cc
Q 009079 135 RCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLNG-----MP 200 (544)
Q Consensus 135 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~ 200 (544)
+-+.|+++.+..|.+..- ...+...+.|+.+.+..|.+.. +....+..++.|+.|++.+|.++. +.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345666666666655522 2334555666777666665541 223346667777777777776642 33
Q ss_pred ccccCCCceeEEEccCCcccc-----CCcCC-ccCCCCCEEEccCCcCC-----cCchhhhCCCCCCEEECCCCcCc
Q 009079 201 ETIGSLSRLIRLDLHQNRILS-----IPSSI-SGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK 266 (544)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~-----l~~~~-~~~~~L~~l~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~ 266 (544)
..+..+++|+.+++++|.+.. +...+ ...+.|+.+.+.+|.++ .+...+...|.|..|++++|.+.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 556777788888888877661 11122 23678888888888777 22334556788888888888873
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=4.7e-13 Score=112.58 Aligned_cols=125 Identities=30% Similarity=0.420 Sum_probs=39.6
Q ss_pred hhcCCCCcEEEccCCCCCCCCHHHHh-CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079 399 LSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (544)
Q Consensus 399 ~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 477 (544)
+.++..+++|+|.+|.|+.+.. ++ .+.+|+.|++++|.|..+. .+..++.|+.|++++|.++.+.......+|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3445566777777777766543 23 4567777777777777663 36666777777777777766643211346677
Q ss_pred ceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCCc----ccccceeeeEec
Q 009079 478 QELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----VTYIFVMLQKKS 527 (544)
Q Consensus 478 ~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~~----~l~~~~~L~~l~ 527 (544)
+.|++++|+|..+. ..+..+++|+.|++.+|+++.-+. .+..+|+|+.||
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 77777777666442 234456777777777777664332 256666676666
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=3.3e-13 Score=113.54 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCCCCCEEECCCCCCCcCCCCccC-CCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcccc-CCCCCCe
Q 009079 425 SLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRI 502 (544)
Q Consensus 425 ~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~-~~~~L~~ 502 (544)
++..+++|++++|.|..+.. +. .+.+|+.|++++|.++.+. .+..+++|+.|++++|.|+++++.+. .+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34455556666665555422 32 3455566666666555543 24555566666666666655544332 3556666
Q ss_pred eecCCCCCCCCC--cccccceeeeEeccCCccccccccc
Q 009079 503 LDLSQNSLQSIP--EVTYIFVMLQKKSINTELVDKNQQF 539 (544)
Q Consensus 503 L~l~~n~l~~l~--~~l~~~~~L~~l~l~~n~~~~~~~~ 539 (544)
|++++|++..+. ..+..+++|+.|++.||++.....|
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y 131 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY 131 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH
Confidence 666666555332 2245555666666666666555555
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.3e-12 Score=127.36 Aligned_cols=178 Identities=31% Similarity=0.456 Sum_probs=150.2
Q ss_pred cCccEEecccCcccchhHhhcCCC-CCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079 45 VDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 123 (544)
+.++.|++..+.+.+++....... +|+.|++++|++..++..+..+++|+.|++++|++.+++......+.|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 568999999999998888887775 9999999999999888888899999999999999999887777889999999999
Q ss_pred CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc
Q 009079 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (544)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (544)
|++..+|........|+++.++++.....+..+.++.++..+.+..+++..+.. .++.++.++.|++++|.+..++. +
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i~~-~ 273 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS-L 273 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-hhccccccceecccccccccccc-c
Confidence 999999877667777999999999766666778888888888888887776422 27777889999999999988876 8
Q ss_pred cCCCceeEEEccCCccccCCc
Q 009079 204 GSLSRLIRLDLHQNRILSIPS 224 (544)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~l~~ 224 (544)
+....++.++++++.+...+.
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccCccCEEeccCccccccch
Confidence 888999999999988775543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.1e-13 Score=124.44 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=151.5
Q ss_pred chhHhhcCCCCCCEEEcCCCCCCCcc--hhhhCCCCccEEEccCCcccc---CCccccccCCccEEEcCCCCCccCCc--
Q 009079 59 KLKEDLRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPS-- 131 (544)
Q Consensus 59 ~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~~~~~~~-- 131 (544)
++..-=+++.+|+++.+.++.+...+ .....|++++.|++++|-+.. +......+++|+.|+++.|++.....
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 44444567788888888888877665 367788889999998886653 33446788889999998888763322
Q ss_pred ccccCcCCCEEEcCCCccc--cCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc--ccccCCC
Q 009079 132 SLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLS 207 (544)
Q Consensus 132 ~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~ 207 (544)
.-..+++|+.|.++.|++. .+...+..+|+|+.|++.+|...-+......-+..|++|++++|.+.+.+ ...+.++
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 1235678888888888877 44455667889999999888544344444556678889999998887766 5677888
Q ss_pred ceeEEEccCCccccC--CcC-----CccCCCCCEEEccCCcCCcCch--hhhCCCCCCEEECCCCcCccc
Q 009079 208 RLIRLDLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSALPA--ELGKLSKLGTLDLHSNQLKEY 268 (544)
Q Consensus 208 ~L~~L~l~~~~~~~l--~~~-----~~~~~~L~~l~l~~~~~~~l~~--~l~~~~~L~~L~l~~~~i~~~ 268 (544)
.|+.|+++.+++..+ |+. ...+++|+.|++..|.+.++++ .+..+++|+.+.+..+.++.-
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 899999998888844 322 3556788888888888865543 356677788887777776643
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=3.1e-12 Score=126.48 Aligned_cols=194 Identities=33% Similarity=0.485 Sum_probs=103.4
Q ss_pred EEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccC-CccEEEcCCCCCccCCcccccCcCCCEEEcCCCccc
Q 009079 72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150 (544)
Q Consensus 72 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 150 (544)
.++...+.+..-...+.....++.|++.++.++.++....... +|+.|++++|.+..++..++.+++|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 3444444442222233334455555555555555554444443 555555555555555444555555555555555555
Q ss_pred cCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCC
Q 009079 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (544)
Q Consensus 151 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~ 230 (544)
.++...+..+.|+.|+++++.+..++.. ......|+++.+++|.+...+..+..+..+..+.+.++++..++..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence 5554444555555555555555555442 122333555555555444444555555555555555555555555555556
Q ss_pred CCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcc
Q 009079 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267 (544)
Q Consensus 231 ~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 267 (544)
.++.+++++|.+..++. +....+++.++++++.+..
T Consensus 256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 66666666666665554 5556666666666655543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=1.2e-12 Score=114.73 Aligned_cols=207 Identities=25% Similarity=0.278 Sum_probs=128.1
Q ss_pred hhHhhcCCCCCCEEEcCCCC--CC-------CcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCC
Q 009079 60 LKEDLRNLPLLTVLNVSHNK--LS-------ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130 (544)
Q Consensus 60 ~~~~~~~~~~L~~L~l~~~~--~~-------~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~ 130 (544)
+...+.-+..|..|..+... +. .+|-.+.-+++|+.+.++.|.-.++.+....-+.|+++.+....+...|
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~ 253 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP 253 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc
Confidence 33344455566666665432 11 1222344456666666666655555433334455666666554332111
Q ss_pred ------------------------cccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCcccc
Q 009079 131 ------------------------SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186 (544)
Q Consensus 131 ------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 186 (544)
.....++.|+++++++|.++.+.+++.-.++++.|++++|.+..+.. ++.+++|
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L 331 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQL 331 (490)
T ss_pred cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccc
Confidence 11223456777788888777777777777788888888877776655 6777777
Q ss_pred ceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCc--hhhhCCCCCCEEECCCCc
Q 009079 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQ 264 (544)
Q Consensus 187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~ 264 (544)
+.|++++|.++.+..+-..+-+++.|.+++|.+..+ ..+..+.+|..|++++|+|..+. ..++++|.|+++.+.+|.
T Consensus 332 ~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 332 QLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777777777776666556666777777777777655 44566667777777777777543 236677777777777776
Q ss_pred Ccccc
Q 009079 265 LKEYC 269 (544)
Q Consensus 265 i~~~~ 269 (544)
+..++
T Consensus 411 l~~~v 415 (490)
T KOG1259|consen 411 LAGSV 415 (490)
T ss_pred ccccc
Confidence 65443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=1.8e-12 Score=113.64 Aligned_cols=132 Identities=33% Similarity=0.391 Sum_probs=116.8
Q ss_pred ccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCC
Q 009079 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 262 (544)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~ 262 (544)
...|+++++++|.++.+..++.-.|.++.|++++|.+..+.. ++.+++|+.|++++|.+..+..+-.++-++++|.+++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 456899999999999999999999999999999999998844 8889999999999999998877777889999999999
Q ss_pred CcCcccchhcccccccEEEccCCCCCCCCc--cccCCCCcceeccCCCCCccccc
Q 009079 263 NQLKEYCVEACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRS 315 (544)
Q Consensus 263 ~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~~~~~~~ 315 (544)
|.+..+.......+|.+||+++|++..+.. .++++|.|+.+.+.+|++..+++
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 999988887777889999999999988543 48999999999999999876654
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=2.5e-13 Score=129.06 Aligned_cols=194 Identities=32% Similarity=0.465 Sum_probs=169.2
Q ss_pred hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhh
Q 009079 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI 87 (544)
Q Consensus 8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~ 87 (544)
.......|++.|.+..+|.+..+ +..|+.+.+..|.+..+|..+.++..|+.++|+.|+++.+|..+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~-------------f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l 140 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACA-------------FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL 140 (722)
T ss_pred ccchhhhhccccccccCchHHHH-------------HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh
Confidence 34456789999999999987766 46699999999999999999999999999999999999999988
Q ss_pred hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEe
Q 009079 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 167 (544)
..++ |+.|-+++|+++.+|..++...+|..|+.+.|.+..+|..++.+.+|+.|.++.|.+..+|+.+. .-.|..||+
T Consensus 141 C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDf 218 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDF 218 (722)
T ss_pred hcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeec
Confidence 8775 99999999999999999999999999999999999999999999999999999999999999888 457999999
Q ss_pred cCCccccccchhhcCccccceEEcCCCcCCCCccccc---CCCceeEEEccCC
Q 009079 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQN 217 (544)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~---~~~~L~~L~l~~~ 217 (544)
+.|++..++.. |.++..|++|-+.+|.+..-|..+- ...--++|+..-+
T Consensus 219 ScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 219 SCNKISYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ccCceeecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 99999999987 9999999999999999986654332 2222366666554
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.6e-12 Score=116.29 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=126.3
Q ss_pred ecCccEEecccCcccchh--HhhcCCCCCCEEEcCCCCCCCc---chhhhCCCCccEEEccCCccccCCcc--ccccCCc
Q 009079 44 AVDLQKLILAHNNIEKLK--EDLRNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDE--IGSATAL 116 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L 116 (544)
.++|+.+.+..+.+...+ +....|++++.||++.|-+..+ ......+|+|+.|+++.|.+...... -..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456777777777766444 3666777777777777765533 23446677777777777766533221 2356677
Q ss_pred cEEEcCCCCCc--cCCcccccCcCCCEEEcCCCc-cccCCccccCCCCceEEEecCCccccccc-hhhcCccccceEEcC
Q 009079 117 VKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIAS 192 (544)
Q Consensus 117 ~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 192 (544)
+.|.+++|+++ .+......+++|+.|.+..|. +..-......++.|++|++++|.+.+.+. ...+.++.|..|.++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 77777777776 333445567777777777773 22222233445677777777777665443 235666777777777
Q ss_pred CCcCCCC--ccc-----ccCCCceeEEEccCCccccCC--cCCccCCCCCEEEccCCcCC
Q 009079 193 KNLLNGM--PET-----IGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALS 243 (544)
Q Consensus 193 ~~~~~~~--~~~-----l~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~l~l~~~~~~ 243 (544)
.+.+.++ |+. ...+++|++|++..|++...+ ..+...++|+.+.+..+.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777543 222 355678888888888886443 23455667777777776665
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.02 E-value=3.6e-11 Score=118.90 Aligned_cols=242 Identities=28% Similarity=0.357 Sum_probs=131.8
Q ss_pred CCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (544)
Q Consensus 66 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 145 (544)
.+..++.+++..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 34444444455555544333345555666666666666555444555666666666666665552 34445556666666
Q ss_pred CCccccCCccccCCCCceEEEecCCccccccc-hhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc
Q 009079 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224 (544)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~ 224 (544)
+|.+..+. .+..+..|+.++++++.+..+.. . ...+.+++.+.+.+|.+..+ ..+..+..+..+++..+.++.+.
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~- 224 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLE- 224 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceecc-
Confidence 66665552 33345666666666666665544 2 34555666666666665544 22233333444455555555441
Q ss_pred CCccCC--CCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCC----CCc-cccCC
Q 009079 225 SISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPP-EIGKM 297 (544)
Q Consensus 225 ~~~~~~--~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~----l~~-~l~~~ 297 (544)
.+.... .|+.++++++++..++..+..+..+..+++.++.+..+........+..+...++.+.. ... .....
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAA 304 (414)
T ss_pred CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccc
Confidence 122222 26667777777666555566667777777777776665555444445555555554442 111 14556
Q ss_pred CCcceeccCCCCCcc
Q 009079 298 TTLRKLLLTGNPLRT 312 (544)
Q Consensus 298 ~~L~~L~l~~~~~~~ 312 (544)
+.++.+.+.+++...
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 305 PTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccCcccc
Confidence 677777777776654
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=5.9e-11 Score=117.37 Aligned_cols=240 Identities=26% Similarity=0.356 Sum_probs=169.9
Q ss_pred ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 123 (544)
+..++.++++.+.+..+...+..+++|+.+++.+|.+..+...+..+++|++|++++|.|+.+ ..+..++.|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 455777778888777755668888899999999988887765577888999999999988877 3456777799999999
Q ss_pred CCCccCCcccccCcCCCEEEcCCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccc
Q 009079 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (544)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (544)
|.++.+. .+..++.|+.++++++.+..+... ...+.+++.+.+.++.+..+.. +..+..+..+++..+.+..+..
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~- 225 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG- 225 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC-
Confidence 9888774 455688889999999988877543 4677888889998888876655 4444555555777777765522
Q ss_pred ccCCC--ceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccch------hccc
Q 009079 203 IGSLS--RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV------EACQ 274 (544)
Q Consensus 203 l~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~------~~~~ 274 (544)
+.... +|+.++++++++...+..+..+..+..+++.++.+..+.. +...+.+..+....+.+..... ....
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAA 304 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhcccccccc
Confidence 22223 3888999998888776677788888888888888875532 4555566666666665542211 1222
Q ss_pred ccccEEEccCCCCCC
Q 009079 275 LRLSVLDLSNNSLSG 289 (544)
Q Consensus 275 ~~L~~L~l~~~~l~~ 289 (544)
..+..+.+..+....
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 305 PTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccCcccc
Confidence 336666666665544
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=5.3e-10 Score=77.30 Aligned_cols=59 Identities=39% Similarity=0.584 Sum_probs=29.2
Q ss_pred CCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCc
Q 009079 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486 (544)
Q Consensus 428 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 486 (544)
+|++|++++|++..++...|.++++|++|++++|.++.+.+.+|..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44455555555554444444445555555555554444444444555555555554443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.8e-09 Score=114.22 Aligned_cols=123 Identities=28% Similarity=0.381 Sum_probs=64.6
Q ss_pred ccEEecccCcccchhHhhcCCCCCCEEEcCCCC--CCCcch-hhhCCCCccEEEccCC-ccccCCccccccCCccEEEcC
Q 009079 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCS 122 (544)
Q Consensus 47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~ 122 (544)
.|++.+.++.+..++... .+++|++|-+..+. +..++. .|..++.|++||+++| .+..+|..++.+-+|++|+++
T Consensus 525 ~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 555555555555444332 23355555555553 333332 3555666666666655 445556556666666666666
Q ss_pred CCCCccCCcccccCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCC
Q 009079 123 SNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGN 170 (544)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~ 170 (544)
++.++.+|..++++..|.+|++..+... .++.....+++|++|.+...
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 6666666655666666666665555433 22233333555665555443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=6.6e-10 Score=76.82 Aligned_cols=61 Identities=39% Similarity=0.633 Sum_probs=49.4
Q ss_pred CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCccc
Q 009079 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (544)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l 463 (544)
|+|++|++++|+++.++...|..+++|++|++++|++..++..+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5678888888888888777788888888888888888888777788888888888888754
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=2e-09 Score=113.81 Aligned_cols=241 Identities=23% Similarity=0.282 Sum_probs=150.5
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCc--ccchhH-hhcCCCCCCEEEcCCC-CCCCcch
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHN-KLSELPA 85 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~ 85 (544)
.++...+-++++..++...- +++|++|-+.++. +..++. .|..++.|++||+++| .+..+|.
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~--------------~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSE--------------NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred heeEEEEeccchhhccCCCC--------------CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 44555666666554442221 4568888888885 555554 5778999999999976 4678899
Q ss_pred hhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCccccC---CccccCCCC
Q 009079 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSL---PEDLADCSK 161 (544)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~ 161 (544)
.++.+-+|++|+++++.+.++|..+..+++|.+|++..+... .++.....+++|++|.+.......- -..+..+.+
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 999999999999999999999999999999999999876543 3444455588999998877653211 123344555
Q ss_pred ceEEEecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CC-----cc-CC
Q 009079 162 MSKLDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SI-----SG-CC 230 (544)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~-----~~-~~ 230 (544)
|+.+....... .+... +..+.+|. .+.+.++.....+..+..+.+|+.|.+.++.+..... .. .. ++
T Consensus 670 L~~ls~~~~s~-~~~e~-l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 670 LENLSITISSV-LLLED-LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred hhhheeecchh-HhHhh-hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 55555533332 11111 22233333 3333334444455667778888888888877753211 10 11 23
Q ss_pred CCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCc
Q 009079 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (544)
Q Consensus 231 ~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 266 (544)
++..+.+.++.....+.+....|+|+.|.+..+...
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred HHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 444444444444444455556678888888776544
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=2.5e-10 Score=112.01 Aligned_cols=131 Identities=28% Similarity=0.298 Sum_probs=110.5
Q ss_pred CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec
Q 009079 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 458 (544)
+..|...++++|.+..+..++.-++.++.|+|+.|++++.. .+..|+.|++|+|++|++..++.....+|. |..|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 34788899999999988888999999999999999999876 578999999999999999988877777776 999999
Q ss_pred CCcccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCC
Q 009079 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIP 514 (544)
Q Consensus 459 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~ 514 (544)
++|-++.+. .++++.+|+-||+++|-|..-. .-++.+..|+.|+|.||++-+-|
T Consensus 240 rnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999887774 3788899999999999776321 34577889999999999987544
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=6.6e-10 Score=109.13 Aligned_cols=129 Identities=28% Similarity=0.270 Sum_probs=108.2
Q ss_pred CCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeec
Q 009079 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483 (544)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 483 (544)
.|...++++|.++..+. .+.-++.|+.|+|++|++.+.. .+..|++|+.|||+.|.+..+..-....|. |..|+++
T Consensus 165 ~L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 46777778887776543 3677899999999999999875 489999999999999999888766566666 9999999
Q ss_pred CCcccccCccccCCCCCCeeecCCCCCCCC--CcccccceeeeEeccCCccccccc
Q 009079 484 RMQLREAPTDILRLQQLRILDLSQNSLQSI--PEVTYIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 484 ~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l--~~~l~~~~~L~~l~l~~n~~~~~~ 537 (544)
+|.++++ .++.++.+|+.||++.|-+..- .+.++.+..|+.|.+.||++.+.-
T Consensus 241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999988 5678999999999999988743 233899999999999999998643
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.66 E-value=2.8e-09 Score=92.54 Aligned_cols=91 Identities=25% Similarity=0.267 Sum_probs=48.3
Q ss_pred CCceeEEEccCCccc-----cCCcCCccCCCCCEEEccCCcCC----cCc-------hhhhCCCCCCEEECCCCcCcccc
Q 009079 206 LSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS----ALP-------AELGKLSKLGTLDLHSNQLKEYC 269 (544)
Q Consensus 206 ~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~l~l~~~~~~----~l~-------~~l~~~~~L~~L~l~~~~i~~~~ 269 (544)
+..++.+++|+|.+. .+...+.+-.+|+..++++-... .++ .++-+||+|+.+++++|.+..-.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 445556666665554 12223344455666665544322 122 23567777777777777664211
Q ss_pred hhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccc
Q 009079 270 VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (544)
Q Consensus 270 ~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~ 313 (544)
+.. +-..+++...|.+|.+++|.+..+
T Consensus 109 ~e~-----------------L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 109 PEE-----------------LGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred chH-----------------HHHHHhcCCCceeEEeecCCCCcc
Confidence 110 112355667777777777776544
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=5.2e-08 Score=84.88 Aligned_cols=161 Identities=20% Similarity=0.219 Sum_probs=96.9
Q ss_pred HHHHhhhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCccc----c-------hhHhhcCCCCCC
Q 009079 4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----K-------LKEDLRNLPLLT 71 (544)
Q Consensus 4 ~~~~~~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~----~-------~~~~~~~~~~L~ 71 (544)
.+.....+..+|||+|.++ .....++..... -.+|+..+++.--.. + +.+++.+||+|+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~---------~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIAN---------VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhh---------hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 4455778889999999887 333344433333 356777777763222 2 335677888888
Q ss_pred EEEcCCCCCC-Cc----chhhhCCCCccEEEccCCccccCCc--------------cccccCCccEEEcCCCCCccCCc-
Q 009079 72 VLNVSHNKLS-EL----PAAIGELHMLKSLDVSFNSIMKIPD--------------EIGSATALVKFDCSSNQLKELPS- 131 (544)
Q Consensus 72 ~L~l~~~~~~-~l----~~~~~~~~~L~~L~l~~~~l~~l~~--------------~~~~~~~L~~L~l~~~~~~~~~~- 131 (544)
.+++++|.+. .. .+.+++-..|++|.+++|.+.-+.. ....-|.|+.+.+..|++...+.
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 8888888876 22 2366777888888888887763321 12344667777777776664442
Q ss_pred ----ccccCcCCCEEEcCCCccccC------CccccCCCCceEEEecCCccc
Q 009079 132 ----SLGRCLNLSDFKASNNCITSL------PEDLADCSKMSKLDVEGNKLT 173 (544)
Q Consensus 132 ----~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~ 173 (544)
.+..-..|+.+.+..|.+..- -..+..+++|+.|++.+|.++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 122224666666666665511 112344556666666666555
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=1.3e-07 Score=98.18 Aligned_cols=105 Identities=22% Similarity=0.315 Sum_probs=47.9
Q ss_pred CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecC
Q 009079 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (544)
Q Consensus 405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 484 (544)
++.|+|++|.+....+..+..+++|+.|++++|.+.+.....+..+++|+.|++++|.++...+..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34444444444443333344444555555555444432222344444555555555544444444444555555555555
Q ss_pred Cccc-ccCccccC-CCCCCeeecCCCC
Q 009079 485 MQLR-EAPTDILR-LQQLRILDLSQNS 509 (544)
Q Consensus 485 n~l~-~i~~~~~~-~~~L~~L~l~~n~ 509 (544)
|.++ .+|..+.. ..++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 5444 44444333 2234444555444
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2e-09 Score=94.70 Aligned_cols=171 Identities=19% Similarity=0.161 Sum_probs=81.2
Q ss_pred CccEEecccCccc--chhHhhcCCCCCCEEEcCCCCCC-CcchhhhCCCCccEEEccCC-ccccC--CccccccCCccEE
Q 009079 46 DLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIMKI--PDEIGSATALVKF 119 (544)
Q Consensus 46 ~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~l~~l--~~~~~~~~~L~~L 119 (544)
.|+++|++...|+ .+-..++.|++|+.|.+.++++. .+...+.+..+|+.|+++.+ .++.. .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666666555 33345566666666666666655 33345555666666666665 34422 1125566666666
Q ss_pred EcCCCCCc--cCCccccc-CcCCCEEEcCCCccc----cCCccccCCCCceEEEecCCc-cccccchhhcCccccceEEc
Q 009079 120 DCSSNQLK--ELPSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIA 191 (544)
Q Consensus 120 ~l~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 191 (544)
+++.|.+. .+...+.+ -++|..|+++|+.-. .+..-..++++|.+|+++++. ++.--...+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66666543 11111111 235555555554321 111123445555555555542 22222222444455555555
Q ss_pred CCCcCCC--CcccccCCCceeEEEccC
Q 009079 192 SKNLLNG--MPETIGSLSRLIRLDLHQ 216 (544)
Q Consensus 192 ~~~~~~~--~~~~l~~~~~L~~L~l~~ 216 (544)
+.|.... .--.+...|+|.+|++.+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecc
Confidence 5543210 001234445555555544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.5e-10 Score=97.37 Aligned_cols=173 Identities=27% Similarity=0.258 Sum_probs=88.0
Q ss_pred ccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhc
Q 009079 277 LSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354 (544)
Q Consensus 277 L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
++++|++...++. +...+..|.+|+.+.+.++.+..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------------------------------------------ 224 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------------------------------------------ 224 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------------------------------------------
Confidence 6777777766665 44446777788877777776532
Q ss_pred ccccceeeecCCCccCCCchhhccCCCccEEEcCCCC-CCCC--ChhhhcCCCCcEEEccCCCCCC--CCHHHHhCCCCC
Q 009079 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQEL--PPELSSCASLQTLILSRNKIKD--WPDAILTSLSSL 429 (544)
Q Consensus 355 ~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~-l~~l--~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L 429 (544)
.+...+....+|+.++++.|. ++.. .-.+.+|..|.+|+++.|.+.. +....-.--++|
T Consensus 225 ----------------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 225 ----------------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred ----------------HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 122233445556666666653 4442 1224566666666666665432 111111112556
Q ss_pred CEEECCCCCC----CcCCCCccCCCCCcceEecCCc-ccCCCCCCCCCCCccCceEeecCC-ccc-ccCccccCCCCCCe
Q 009079 430 SCLKLDNNPL----RQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRM-QLR-EAPTDILRLQQLRI 502 (544)
Q Consensus 430 ~~L~l~~n~i----~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ls~n-~l~-~i~~~~~~~~~L~~ 502 (544)
+.|+++|++- ..+. .-.+.||+|..||++.| .++.-....|-.++.|+.|.+++| .|. .---.+...|+|.+
T Consensus 289 ~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 6666666541 1111 11245666666666655 233322233445566666666666 232 11112334566666
Q ss_pred eecCCC
Q 009079 503 LDLSQN 508 (544)
Q Consensus 503 L~l~~n 508 (544)
|++.+|
T Consensus 368 Ldv~g~ 373 (419)
T KOG2120|consen 368 LDVFGC 373 (419)
T ss_pred EEeccc
Confidence 666655
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=9.2e-08 Score=99.20 Aligned_cols=108 Identities=25% Similarity=0.245 Sum_probs=94.5
Q ss_pred CCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc-ccCccccCCCCCCeeecC
Q 009079 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLS 506 (544)
Q Consensus 428 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~ 506 (544)
.++.|+|++|.+.......+..+++|+.|++++|.+....+..++.+++|+.|+|++|.+. .+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998765666899999999999999999888888999999999999999998 789999999999999999
Q ss_pred CCCCC-CCCcccccc-eeeeEeccCCccccc
Q 009079 507 QNSLQ-SIPEVTYIF-VMLQKKSINTELVDK 535 (544)
Q Consensus 507 ~n~l~-~l~~~l~~~-~~L~~l~l~~n~~~~ 535 (544)
+|+++ .+|..+... ..+..+++.+|...+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 99998 778776653 467788999887554
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.52 E-value=1.8e-08 Score=78.35 Aligned_cols=115 Identities=24% Similarity=0.405 Sum_probs=88.2
Q ss_pred hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhc-CCCCCCEEEcCCCCCCCcchh
Q 009079 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAA 86 (544)
Q Consensus 8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~ 86 (544)
+..++.+|||++++..++.. .+.+.. ...|..+++++|.+.++|+.|. +++.++.+++++|.++++|..
T Consensus 26 akE~h~ldLssc~lm~i~da-vy~l~~---------~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE 95 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADA-VYMLSK---------GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE 95 (177)
T ss_pred HHHhhhcccccchhhHHHHH-HHHHhC---------CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH
Confidence 44677888888888877643 333333 4668888888888888887554 556888888888888888888
Q ss_pred hhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcc
Q 009079 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 132 (544)
+..++.|+.|+++.|.+...|+.+..+.++-.|+..++....++..
T Consensus 96 ~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 8888888888888888888888777788888888888777666543
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=4.5e-09 Score=96.93 Aligned_cols=132 Identities=21% Similarity=0.164 Sum_probs=59.1
Q ss_pred cCCCCcEEEccCCC-CCCC-CHHHHhCCCCCCEEECCCCC-CCcCCCCc-cCCCCCcceEecCCcccCCCC-C-CCCCCC
Q 009079 401 SCASLQTLILSRNK-IKDW-PDAILTSLSSLSCLKLDNNP-LRQVPSDG-FKDIPMLQILDLSYNIASLPE-N-PPFSSL 474 (544)
Q Consensus 401 ~~~~L~~L~l~~~~-l~~~-~~~~l~~~~~L~~L~l~~n~-i~~~~~~~-l~~~~~L~~L~l~~n~l~~~~-~-~~~~~l 474 (544)
.+..|+.++.+++. +++. ..+.-..+++|+.+.+.+|+ +++..... -++++.|+.+++.++....-. . ..-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 44555555555542 3321 12222345556666555555 33322111 134555555555555221111 1 111235
Q ss_pred ccCceEeecCC-ccccc-----CccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccCCcc
Q 009079 475 PHLQELYLRRM-QLREA-----PTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSINTEL 532 (544)
Q Consensus 475 ~~L~~L~ls~n-~l~~i-----~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~~n~ 532 (544)
+.|+.|.+++| .|+.- ...-.....|+.+.+.+|+.. ...+.+..++.|+++++.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 56666666655 23311 122223445556666666554 234445555666665555543
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.39 E-value=4.4e-07 Score=75.74 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=90.3
Q ss_pred CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecC
Q 009079 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (544)
Q Consensus 405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 484 (544)
=+++++.+.++..+.... .-......+++++|.+..+.. |..++.|..|.+++|+|+.+.+.--..+++|+.|.+.+
T Consensus 21 e~e~~LR~lkip~ienlg-~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLG-ATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhhcc-ccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 456677766655443210 123567788888888877643 78888899999999988888887666678889999999
Q ss_pred CcccccC--ccccCCCCCCeeecCCCCCCCC----CcccccceeeeEeccCCc
Q 009079 485 MQLREAP--TDILRLQQLRILDLSQNSLQSI----PEVTYIFVMLQKKSINTE 531 (544)
Q Consensus 485 n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l----~~~l~~~~~L~~l~l~~n 531 (544)
|.|..+. ..+..||.|+.|.+-+|+++.- ...++.+|+|+.||+.+-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8887552 3355688899999988888843 345788888888887653
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.37 E-value=6.5e-07 Score=74.78 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=71.9
Q ss_pred CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC-CCCCCCCccCceEe
Q 009079 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELY 481 (544)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 481 (544)
.....+||++|.+..++. |..++.|.+|.++.|+|+.+...--..+|.|+.|.+.+|.+..++ ...++.||+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345667777777766554 567778888888888887776655556677888888887655543 23467778888888
Q ss_pred ecCCcccccC----ccccCCCCCCeeecCCCCC
Q 009079 482 LRRMQLREAP----TDILRLQQLRILDLSQNSL 510 (544)
Q Consensus 482 ls~n~l~~i~----~~~~~~~~L~~L~l~~n~l 510 (544)
+-+|.+..-. ..+..+|+|+.||+.+-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8777666321 2345677888888776543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=4.1e-08 Score=76.37 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=63.1
Q ss_pred CCEEEcCCCCCCCcchh---hhCCCCccEEEccCCccccCCcccc-ccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079 70 LTVLNVSHNKLSELPAA---IGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (544)
Q Consensus 70 L~~L~l~~~~~~~l~~~---~~~~~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 145 (544)
+..+++++|++-.++++ +....+|+.+++++|.+.++|..|. +.+.+++|++..|.++++|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34445555554444332 2344555556666666666655543 3345666666666666666666666666666666
Q ss_pred CCccccCCccccCCCCceEEEecCCccccccch
Q 009079 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178 (544)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 178 (544)
.|.+...|..+..+.++.+|+..++....++..
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 666666666655566666666666665555544
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2.8e-07 Score=81.46 Aligned_cols=196 Identities=19% Similarity=0.235 Sum_probs=87.6
Q ss_pred CCCCCCEEEcCCCCCCCcch---hhhCCCCccEEEccCCccccCCccc-cccCCccEEEcCCCCCc--cCCcccccCcCC
Q 009079 66 NLPLLTVLNVSHNKLSELPA---AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLK--ELPSSLGRCLNL 139 (544)
Q Consensus 66 ~~~~L~~L~l~~~~~~~l~~---~~~~~~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L 139 (544)
.++.++++|+.+|.+++..+ .+.++|.|+.|+++.|++....+.. ....+|+.|-+.|+.+. .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 44556666666666553322 3355666666666665554221222 23345555655555443 332334445555
Q ss_pred CEEEcCCCccccCC---ccccCC-CCceEEEecCCcccc-ccc-hhhcCccccceEEcCCCcCCCC--cccccCCCceeE
Q 009079 140 SDFKASNNCITSLP---EDLADC-SKMSKLDVEGNKLTV-LSN-NLIASWTMLTELIASKNLLNGM--PETIGSLSRLIR 211 (544)
Q Consensus 140 ~~L~l~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~-~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~ 211 (544)
+.|.++.|....+. ...... +.+++|..-+|.... ... ......+++..+-+..+.+.+. ......++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 55555555332110 011111 133333333333220 000 0012234455555555544322 123344455556
Q ss_pred EEccCCccccCC--cCCccCCCCCEEEccCCcCC-cCc------hhhhCCCCCCEEECC
Q 009079 212 LDLHQNRILSIP--SSISGCCSLAEFYMGNNALS-ALP------AELGKLSKLGTLDLH 261 (544)
Q Consensus 212 L~l~~~~~~~l~--~~~~~~~~L~~l~l~~~~~~-~l~------~~l~~~~~L~~L~l~ 261 (544)
|+++.+.+.... ..+.+++.|+.+.+.++.+. .+. -.++.+++++.|+=+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 666666555321 34556666666666666554 111 014566677766543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.31 E-value=5.4e-07 Score=56.69 Aligned_cols=41 Identities=32% Similarity=0.523 Sum_probs=29.4
Q ss_pred ccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCc
Q 009079 475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 475 ~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~ 515 (544)
++|+.|++++|+|+.+|..+.++++|+.|++++|+++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46777888888888777667778888888888888776653
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=5e-06 Score=79.19 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=90.4
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCC-CCCCChhhhcCCCCcEEEccCC-CCCCCCHHHHhCCCCCCEEEC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKL 434 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l 434 (544)
..++.|++++|.+..+|. + .++|++|.+++|. ++.+|..+ .++|++|++++| .+..++ ++|+.|++
T Consensus 52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEEe
Confidence 678899999998888873 2 4579999999864 66677644 368999999998 555433 56888888
Q ss_pred CCCCCCcCCCCccCCCCCcceEecCCcc-cCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCC
Q 009079 435 DNNPLRQVPSDGFKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 509 (544)
Q Consensus 435 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~ 509 (544)
.++....+.. -.++|+.|.+.+++ ....... -.-.++|+.|++++|....+|..+. .+|+.|+++.+.
T Consensus 120 ~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 120 KGSATDSIKN----VPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCCccccc----CcchHhheeccccccccccccc-cccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 7766544321 12478888885432 1111111 0122689999999997666655433 589999988763
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.26 E-value=1.2e-06 Score=90.81 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=43.7
Q ss_pred hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCC--cccccCcCCCEEEcCCCccccCC-------ccccC
Q 009079 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLP-------EDLAD 158 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~ 158 (544)
.++++|.+||+|+++++.+ ..++.+++|+.|.+.+-.+..-. ..+.++++|+.||+|.......+ +.-..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 3444444444444444444 33444444444444433333211 13344455555555443322111 12233
Q ss_pred CCCceEEEecCCcccc-ccchhhcCccccceEE
Q 009079 159 CSKMSKLDVEGNKLTV-LSNNLIASWTMLTELI 190 (544)
Q Consensus 159 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ 190 (544)
+|+|+.||.+++.+.. +....+...++|+.+.
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 5666666666665552 2222233334444443
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.23 E-value=2.3e-06 Score=69.76 Aligned_cols=120 Identities=15% Similarity=0.296 Sum_probs=58.6
Q ss_pred hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (544)
Q Consensus 398 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 477 (544)
+|..+.+|+.+.+.. .+..+....|..+++|+.+.+.++ +..+...+|.++++|+.+.+.+ .+..+....|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 356666777777764 456666666777777777777664 6666666677777777777765 4555566667777777
Q ss_pred ceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCC-Ccccccceee
Q 009079 478 QELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI-PEVTYIFVML 523 (544)
Q Consensus 478 ~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L 523 (544)
+.+++..+ ++.++.. +.++ .|+.+.+.+ .+..+ ...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77777654 5444333 3334 777777765 44444 3345555555
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=2.8e-06 Score=53.46 Aligned_cols=38 Identities=42% Similarity=0.675 Sum_probs=22.3
Q ss_pred CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCc
Q 009079 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l 83 (544)
+|++|++++|.++++|..++++++|+.|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 46666666666666665566666666666666666554
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=1.1e-06 Score=77.75 Aligned_cols=200 Identities=20% Similarity=0.210 Sum_probs=126.7
Q ss_pred CCCCEEEcCCCCCCCcch--hh-hCCCCccEEEccCCcccc---CCccccccCCccEEEcCCCCCccCCccc-ccCcCCC
Q 009079 68 PLLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLS 140 (544)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~--~~-~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~ 140 (544)
+-++.+-+.++.+....+ .| ..+..++.+++.+|.+++ +...+.++|.|++|+++.|++....+.. .-..+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345566666777765533 23 568899999999999984 4344789999999999999887333333 2456899
Q ss_pred EEEcCCCccc--cCCccccCCCCceEEEecCCcccc--ccchhhcCc-cccceEEcCCCcCC---CCcccccCCCceeEE
Q 009079 141 DFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTV--LSNNLIASW-TMLTELIASKNLLN---GMPETIGSLSRLIRL 212 (544)
Q Consensus 141 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~---~~~~~l~~~~~L~~L 212 (544)
+|-+.+..+. .....+..++.+++|.++.|.+.. ++....... +.++.+.+..|... .+...-.-++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 9988887654 555566777888888888775442 222222222 24555655555432 111112234566666
Q ss_pred EccCCccccC--CcCCccCCCCCEEEccCCcCCcCc--hhhhCCCCCCEEECCCCcCcc
Q 009079 213 DLHQNRILSI--PSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKE 267 (544)
Q Consensus 213 ~l~~~~~~~l--~~~~~~~~~L~~l~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~i~~ 267 (544)
-+..+.+... .......+.+..|+++.+.+.++. .++.+++.|..|.++.+.+.+
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 6766666533 234455566667777777777553 346777888888777776653
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=2.6e-06 Score=88.25 Aligned_cols=129 Identities=25% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCCCEEEcCCCCCC--Ccchhh-hCCCCccEEEccCCccc--cCCccccccCCccEEEcCCCCCccCCcccccCcCCCEE
Q 009079 68 PLLTVLNVSHNKLS--ELPAAI-GELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF 142 (544)
Q Consensus 68 ~~L~~L~l~~~~~~--~l~~~~-~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 142 (544)
.+|++|++++...- ..+..+ ..+|.|++|.+.+-.+. ++.....++++|..||+++++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46777777764422 333333 35677777777765443 3344456677777777777777766 566777777777
Q ss_pred EcCCCccccCC--ccccCCCCceEEEecCCcccccc---c---hhhcCccccceEEcCCCcCC
Q 009079 143 KASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLS---N---NLIASWTMLTELIASKNLLN 197 (544)
Q Consensus 143 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~---~---~~~~~~~~L~~L~l~~~~~~ 197 (544)
.+.+-.++... ..+..+++|+.||++........ . ..-..+|.|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77776666322 34566777777777765433111 0 11223567777777766553
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=6.2e-05 Score=71.89 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=41.5
Q ss_pred hcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCC-ccccCCccccccCCccEEEcCCC-CCccCCcccccCcCCCE
Q 009079 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSD 141 (544)
Q Consensus 64 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~ 141 (544)
+..++++++|++++|.++.+|. -..+|++|.+++| .++.+|..+ .++|++|++++| .+..+|. +|++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 4445667777777776666651 1234777777664 455555433 246677777666 4444442 3455
Q ss_pred EEcCCCc
Q 009079 142 FKASNNC 148 (544)
Q Consensus 142 L~l~~~~ 148 (544)
|++..+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 5554443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.97 E-value=1.3e-05 Score=65.31 Aligned_cols=120 Identities=17% Similarity=0.386 Sum_probs=71.6
Q ss_pred hccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (544)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 454 (544)
+..+.+|+.+.+.. .+..++. ++..+++|+.+.+..+ +..+....|..+++++.+.+.+ .+..++...|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34456888888885 4555443 4788889999999884 7888888889998999999976 67777777888899999
Q ss_pred eEecCCcccCCCCCCCCCCCccCceEeecCCcccccC-ccccCCCCCC
Q 009079 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR 501 (544)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~~~~~L~ 501 (544)
.+++..+ +..+....|.++ .|+.+.+.. .+..++ ..|.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999876 777888889888 999999887 444444 3455577764
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.90 E-value=9.3e-07 Score=82.02 Aligned_cols=286 Identities=16% Similarity=0.115 Sum_probs=167.2
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCc-cc--chhHhhcCCCCCCEEEcCCCC-CCCc--
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IE--KLKEDLRNLPLLTVLNVSHNK-LSEL-- 83 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~-~~~l-- 83 (544)
.++.+.+.|.. .++..-.+.+. .+++++++|++.++. ++ .+...-..|++|++|++..|. +++.
T Consensus 139 ~lk~LSlrG~r--~v~~sslrt~~--------~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCR--AVGDSSLRTFA--------SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccc--cCCcchhhHHh--------hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 56778888764 22222222111 127889999999984 33 233445688999999999854 5532
Q ss_pred chhhhCCCCccEEEccCC-ccc--cCCccccccCCccEEEcCCCCCc---cCCcccccCcCCCEEEcCCCccc---cCCc
Q 009079 84 PAAIGELHMLKSLDVSFN-SIM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNNCIT---SLPE 154 (544)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~---~~~~ 154 (544)
..-...|++|++++++-| .++ .+-....+++.++.+...||.-. .+...-+.+..+.++++.+|..- .+..
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 223467999999999987 454 23334567777888877766322 22122234556666665555322 1111
Q ss_pred cccCCCCceEEEecCCc-ccc-ccchhhcCccccceEEcCCCcC-CCC--cccccCCCceeEEEccCCccc---cCCcCC
Q 009079 155 DLADCSKMSKLDVEGNK-LTV-LSNNLIASWTMLTELIASKNLL-NGM--PETIGSLSRLIRLDLHQNRIL---SIPSSI 226 (544)
Q Consensus 155 ~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~-~~~--~~~l~~~~~L~~L~l~~~~~~---~l~~~~ 226 (544)
.-..+..|+.++.+++. ++. .....-.++.+|+.+.++.|+. +.. ..--.++++|+.+++.++... .+.+.-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 23456778888877763 222 2223344567888888888763 221 122356778888888877554 244445
Q ss_pred ccCCCCCEEEccCCcCC-c-----CchhhhCCCCCCEEECCCCcCccc---chhcccccccEEEccCCCCCC---CCccc
Q 009079 227 SGCCSLAEFYMGNNALS-A-----LPAELGKLSKLGTLDLHSNQLKEY---CVEACQLRLSVLDLSNNSLSG---LPPEI 294 (544)
Q Consensus 227 ~~~~~L~~l~l~~~~~~-~-----l~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~~~l~~---l~~~l 294 (544)
..|+.|+.+.++.+... + +...-.....+..+.++++....- ........|+.+++-++.-.. +.+.-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 67888888888877543 1 122234567788888888765421 111222347777777764322 33334
Q ss_pred cCCCCcceecc
Q 009079 295 GKMTTLRKLLL 305 (544)
Q Consensus 295 ~~~~~L~~L~l 305 (544)
.++|+++...+
T Consensus 449 ~~lp~i~v~a~ 459 (483)
T KOG4341|consen 449 THLPNIKVHAY 459 (483)
T ss_pred hhCccceehhh
Confidence 56677666544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=5.5e-05 Score=66.72 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=48.8
Q ss_pred hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcch--
Q 009079 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-- 85 (544)
Q Consensus 8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~-- 85 (544)
...++.|+|.|++|.+|. ++.. .+.|+.|.|+-|.|+.+ +.+..|++|++|.|..|.|.++.+
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~k------------Mp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEK------------MPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHh------------cccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHH
Confidence 345666677777666653 2222 45566677776666655 345666667777666666665543
Q ss_pred hhhCCCCccEEEccCCcc
Q 009079 86 AIGELHMLKSLDVSFNSI 103 (544)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l 103 (544)
.+.++++|+.|.|..|..
T Consensus 83 YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPC 100 (388)
T ss_pred HHhcCchhhhHhhccCCc
Confidence 456666666666665543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00032 Score=61.70 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=70.1
Q ss_pred hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC--CCCc-CCCCccCCCCCcceEecCCcccCCCC-CCCCCCC
Q 009079 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN--PLRQ-VPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSL 474 (544)
Q Consensus 399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n--~i~~-~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l 474 (544)
......|+.+++.++.++.+.. |..+|+|+.|.++.| ++.. +..- ...+|+|+++++++|++..+. ...+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhh
Confidence 3445566666677666665433 577888999999988 4442 2222 344588888888888777532 3445666
Q ss_pred ccCceEeecCCcccccC----ccccCCCCCCeeecCCCCCCCC
Q 009079 475 PHLQELYLRRMQLREAP----TDILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 475 ~~L~~L~ls~n~l~~i~----~~~~~~~~L~~L~l~~n~l~~l 513 (544)
++|..|++.+|..+.+- ..|.-+++|+.|+-....=...
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccc
Confidence 77888888888665432 1223377777776655544433
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=2.3e-05 Score=69.06 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=78.6
Q ss_pred CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc--cccCCCCCCe
Q 009079 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLRI 502 (544)
Q Consensus 425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~--~~~~~~~L~~ 502 (544)
.+.+.+.|+.=||.+.+|.. ...++.|+.|.|+=|+++.+.+ +..|++|++|+|..|.|.++.+ .+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35677888999999998854 6789999999999999988855 8899999999999999887643 3567999999
Q ss_pred eecCCCCCC--CCC----cccccceeeeEec
Q 009079 503 LDLSQNSLQ--SIP----EVTYIFVMLQKKS 527 (544)
Q Consensus 503 L~l~~n~l~--~l~----~~l~~~~~L~~l~ 527 (544)
|+|..|+=. .-+ ..+..+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999998754 111 2256677777776
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.71 E-value=0.00046 Score=70.52 Aligned_cols=230 Identities=21% Similarity=0.190 Sum_probs=126.1
Q ss_pred HHHhhhcceeEcCCC-cccccc-hHHhhcccccCCCCceeeecCccEEecccC-c-ccc----hhHhhcCCCCCCEEEcC
Q 009079 5 LKAARTSGSLNLSNR-SLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHN-N-IEK----LKEDLRNLPLLTVLNVS 76 (544)
Q Consensus 5 ~~~~~~~~~l~ls~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-l~~----~~~~~~~~~~L~~L~l~ 76 (544)
......++.+.+.+. .+.+.. ..+.. .++.|+.|+++++ . ... .......+++|++++++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALAL------------KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHh------------hCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 344567777877765 344322 11111 2578999999873 1 111 22356677999999999
Q ss_pred CCC-CCCc--chhhhCCCCccEEEccCCc-cc--cCCccccccCCccEEEcCCCCCc---cCCcccccCcCCCEEEcCCC
Q 009079 77 HNK-LSEL--PAAIGELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN 147 (544)
Q Consensus 77 ~~~-~~~l--~~~~~~~~~L~~L~l~~~~-l~--~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~ 147 (544)
.+. +++. ......|++|++|.+.+|. ++ .+......++.|++|+++++... .+.....++++++.+.+...
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 987 6643 2223458999999988785 55 34444678899999999988653 12223445777776554433
Q ss_pred ccccCCccccCCCCceEEEecCCcc---ccccchhhcCccccceEEcCCCcCCCCc--ccccCCCceeEEEccCCccccC
Q 009079 148 CITSLPEDLADCSKMSKLDVEGNKL---TVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSI 222 (544)
Q Consensus 148 ~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~l 222 (544)
.. +..++.+.+.+... ..........++.++.+.+..+...... ..+..++.|. ..+...
T Consensus 332 ~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----- 396 (482)
T KOG1947|consen 332 NG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----- 396 (482)
T ss_pred CC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH-----
Confidence 21 34444444443322 1233333566677777766666543221 3344555552 222110
Q ss_pred CcCCccCCCCCEEEccCCcCCcCc--hhhhC-CCCCCEEECCCCc
Q 009079 223 PSSISGCCSLAEFYMGNNALSALP--AELGK-LSKLGTLDLHSNQ 264 (544)
Q Consensus 223 ~~~~~~~~~L~~l~l~~~~~~~l~--~~l~~-~~~L~~L~l~~~~ 264 (544)
...+..++.+++..+...... ..... +.+++.+++.++.
T Consensus 397 ---~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 397 ---LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred ---hccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 111112666777666544221 11111 5566666666554
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0017 Score=57.34 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=70.8
Q ss_pred hCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc--ccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCC
Q 009079 424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQ 499 (544)
Q Consensus 424 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~ 499 (544)
-.+..|+.+.+.+..++++. .+..+|+|++|.++.| .+..-...-...+|+|+.|++++|+|+.+. ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34466777777777777663 3677889999999998 444333333455699999999999887431 22455778
Q ss_pred CCeeecCCCCCCCCC----cccccceeeeEecc
Q 009079 500 LRILDLSQNSLQSIP----EVTYIFVMLQKKSI 528 (544)
Q Consensus 500 L~~L~l~~n~l~~l~----~~l~~~~~L~~l~l 528 (544)
|..|++.+|+.+.+- ..+..+++|+.+|-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 889999999887542 23566777777763
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0049 Score=32.00 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=8.7
Q ss_pred CceEeecCCcccccCcc
Q 009079 477 LQELYLRRMQLREAPTD 493 (544)
Q Consensus 477 L~~L~ls~n~l~~i~~~ 493 (544)
|+.|++++|.++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555555444
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.74 E-value=0.00022 Score=61.26 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=45.7
Q ss_pred cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 124 (544)
+..+.||++.+++..+..-++.++.+..++++.+++..+|..+.....+..+++..|..++.|.+++..+++++++..++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 33555666665555444455555555555655555555555555555555555555555555555555555555555555
Q ss_pred C
Q 009079 125 Q 125 (544)
Q Consensus 125 ~ 125 (544)
.
T Consensus 122 ~ 122 (326)
T KOG0473|consen 122 E 122 (326)
T ss_pred c
Confidence 4
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.59 E-value=0.0017 Score=66.39 Aligned_cols=130 Identities=24% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCccEEEcCCCC-CCC--CChhhhcCCCCcEEEccCC--CCCCC---CHHHHhCCCCCCEEECCCCC-CCcCCCCccC-
Q 009079 379 AGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRN--KIKDW---PDAILTSLSSLSCLKLDNNP-LRQVPSDGFK- 448 (544)
Q Consensus 379 ~~~L~~L~l~~~~-l~~--l~~~~~~~~~L~~L~l~~~--~l~~~---~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~- 448 (544)
++.++.+.+.++. ++. +......++.|++|+++++ .+... .......+++|+.++++++. +++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5778888888773 554 4455677888888888763 22221 12234556888888888887 6654433333
Q ss_pred CCCCcceEecCCcc-cCCCCCCCC-CCCccCceEeecCCc-cc--ccCccccCCCCCCeeecCCC
Q 009079 449 DIPMLQILDLSYNI-ASLPENPPF-SSLPHLQELYLRRMQ-LR--EAPTDILRLQQLRILDLSQN 508 (544)
Q Consensus 449 ~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~ls~n~-l~--~i~~~~~~~~~L~~L~l~~n 508 (544)
.|++|+.|.+.++. +++.+...+ ..++.|++|++++|. ++ .+.....+++.|+.|.+.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 27788888877665 555554444 336778888888773 32 23333344666666555444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0046 Score=32.13 Aligned_cols=21 Identities=48% Similarity=0.526 Sum_probs=17.1
Q ss_pred CCCeeecCCCCCCCCCccccc
Q 009079 499 QLRILDLSQNSLQSIPEVTYI 519 (544)
Q Consensus 499 ~L~~L~l~~n~l~~l~~~l~~ 519 (544)
+|+.||+++|+++.+|+.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 578999999999988876654
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.47 E-value=0.0092 Score=28.65 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=5.3
Q ss_pred cCceEeecCCccccc
Q 009079 476 HLQELYLRRMQLREA 490 (544)
Q Consensus 476 ~L~~L~ls~n~l~~i 490 (544)
+|+.|+|++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.35 E-value=9.7e-05 Score=73.40 Aligned_cols=176 Identities=27% Similarity=0.268 Sum_probs=94.5
Q ss_pred ceeeecCCCccC-----CCchhhccCCCccEEEcCCCCCCC-----CChhhhcC-CCCcEEEccCCCCCCC----CHHHH
Q 009079 359 SKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDW----PDAIL 423 (544)
Q Consensus 359 l~~l~l~~~~~~-----~i~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~~~l~~~----~~~~l 423 (544)
+..+.+.+|.+. .+...+...+.|+.|++++|.+++ +...+... ..++.|++..|.++.. ..+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 444555555444 223334445666777777776664 22222222 4456666666666542 22334
Q ss_pred hCCCCCCEEECCCCCCCc----CCCCccC----CCCCcceEecCCcccCCCCC----CCCCCCcc-CceEeecCCcccc-
Q 009079 424 TSLSSLSCLKLDNNPLRQ----VPSDGFK----DIPMLQILDLSYNIASLPEN----PPFSSLPH-LQELYLRRMQLRE- 489 (544)
Q Consensus 424 ~~~~~L~~L~l~~n~i~~----~~~~~l~----~~~~L~~L~l~~n~l~~~~~----~~~~~l~~-L~~L~ls~n~l~~- 489 (544)
.....++.++++.|.+.. ....++. ...+++.|.+.+|.++.... ..++..+. +..|++..|.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 446666777776666532 1111122 24466677777665553221 22344444 5567777776552
Q ss_pred ----cCccccCC-CCCCeeecCCCCCC-----CCCcccccceeeeEeccCCcccc
Q 009079 490 ----APTDILRL-QQLRILDLSQNSLQ-----SIPEVTYIFVMLQKKSINTELVD 534 (544)
Q Consensus 490 ----i~~~~~~~-~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~l~l~~n~~~ 534 (544)
+...+... +.++.++++.|+++ .+++.+..++.++++.++.|.+-
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 23333444 56677777777776 34556667777777777777654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.32 E-value=0.01 Score=28.47 Aligned_cols=17 Identities=59% Similarity=0.870 Sum_probs=10.6
Q ss_pred CCCCeeecCCCCCCCCC
Q 009079 498 QQLRILDLSQNSLQSIP 514 (544)
Q Consensus 498 ~~L~~L~l~~n~l~~l~ 514 (544)
++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46888999999888765
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.02 E-value=0.00039 Score=69.17 Aligned_cols=179 Identities=25% Similarity=0.275 Sum_probs=97.8
Q ss_pred cceeEcCCCcccccchHHh-hcccccCCCCceeeecCccEEecccCcccc-----hhHhhcCC-CCCCEEEcCCCCCC--
Q 009079 11 SGSLNLSNRSLRDVPNEVY-KNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS-- 81 (544)
Q Consensus 11 ~~~l~ls~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~-- 81 (544)
+..++|.++.+.+-+.... +.+.. .+.|..|+++++.+.. +-..+... ..++.|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t---------~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~ 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKT---------LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcc---------cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc
Confidence 5566666666664333322 22222 4566777777776651 11223332 44566666666655
Q ss_pred ---CcchhhhCCCCccEEEccCCccc-----cCCcccc----ccCCccEEEcCCCCCccC-----CcccccCcC-CCEEE
Q 009079 82 ---ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKEL-----PSSLGRCLN-LSDFK 143 (544)
Q Consensus 82 ---~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~----~~~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~ 143 (544)
.+.+.+.....++.++++.|.+. .++..+. ...++++|++..+.++.. ...+...+. ++.++
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 23345555667777777776553 1222233 355677777777766511 112333444 55566
Q ss_pred cCCCcccc-----CCccccCC-CCceEEEecCCcccccc----chhhcCccccceEEcCCCcCCC
Q 009079 144 ASNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG 198 (544)
Q Consensus 144 l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 198 (544)
+..|.+.. +.+.+... ..++.+++..|.++... ...+..++.++++.+..|.+..
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 66666552 22334444 56778888877776322 2234555677888888777653
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.0017 Score=54.95 Aligned_cols=82 Identities=23% Similarity=0.089 Sum_probs=46.6
Q ss_pred CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCC-cCCCCccC-CCCCcceEecCCc-ccCCCCCCCCCCCccCce
Q 009079 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFK-DIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479 (544)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~l~-~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 479 (544)
..++.+|-+++.|......-+..++.++.|.+.+|+-. +...+-+. ..++|+.|++++| +|++-+...+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34677888888877777777777888888888777632 21111111 2345555555544 444444444444455555
Q ss_pred EeecC
Q 009079 480 LYLRR 484 (544)
Q Consensus 480 L~ls~ 484 (544)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55444
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.36 E-value=0.0012 Score=56.87 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=60.2
Q ss_pred ccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCccccc
Q 009079 57 IEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGR 135 (544)
Q Consensus 57 l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 135 (544)
++++| ..+..+...+.||++.+.+..+...|+.+..|..|+++.+++..+|.+++....+..++...|..+..|.+++.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 33444 34566667777777777666665566666667777777777666676666666666666666666666666666
Q ss_pred CcCCCEEEcCCCcc
Q 009079 136 CLNLSDFKASNNCI 149 (544)
Q Consensus 136 ~~~L~~L~l~~~~~ 149 (544)
.+++++++..++.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 66666666655543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.0053 Score=52.03 Aligned_cols=81 Identities=26% Similarity=0.235 Sum_probs=51.6
Q ss_pred CCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCC-CCCCCHHHHh-CCCCCCEEECCCCC-CCcCCCCccCCCCCcce
Q 009079 380 GEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNK-IKDWPDAILT-SLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQI 455 (544)
Q Consensus 380 ~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~-~~~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~ 455 (544)
..++.++-+++.|... -.-+..++.++.|.+.+|. +.+.-...++ -.++|+.|++++|+ |++-....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3567777777766542 2235667777777777773 4432222222 24788888888776 77666566777778887
Q ss_pred EecCC
Q 009079 456 LDLSY 460 (544)
Q Consensus 456 L~l~~ 460 (544)
|.|.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77765
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.46 E-value=0.091 Score=28.48 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=7.6
Q ss_pred cCceEeecCCcccccCc
Q 009079 476 HLQELYLRRMQLREAPT 492 (544)
Q Consensus 476 ~L~~L~ls~n~l~~i~~ 492 (544)
+|+.|+|++|.|+.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.46 E-value=0.091 Score=28.48 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=7.6
Q ss_pred cCceEeecCCcccccCc
Q 009079 476 HLQELYLRRMQLREAPT 492 (544)
Q Consensus 476 ~L~~L~ls~n~l~~i~~ 492 (544)
+|+.|+|++|.|+.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.31 E-value=0.33 Score=26.21 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=7.8
Q ss_pred CCcEEEccCCCCCCCCHH
Q 009079 404 SLQTLILSRNKIKDWPDA 421 (544)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~ 421 (544)
+|+.|++++|.++.++..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444444444444433
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.31 E-value=0.33 Score=26.21 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=7.8
Q ss_pred CCcEEEccCCCCCCCCHH
Q 009079 404 SLQTLILSRNKIKDWPDA 421 (544)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~ 421 (544)
+|+.|++++|.++.++..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444444444444433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.91 E-value=0.44 Score=25.64 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=14.7
Q ss_pred CCCCeeecCCCCCCCCCcc
Q 009079 498 QQLRILDLSQNSLQSIPEV 516 (544)
Q Consensus 498 ~~L~~L~l~~n~l~~l~~~ 516 (544)
++|+.|++++|+++++|+.
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4678888888888888864
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.08 E-value=0.24 Score=26.19 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=5.3
Q ss_pred CCCcEEEccCCCCC
Q 009079 403 ASLQTLILSRNKIK 416 (544)
Q Consensus 403 ~~L~~L~l~~~~l~ 416 (544)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.09 E-value=1.1 Score=24.27 Aligned_cols=17 Identities=47% Similarity=0.624 Sum_probs=9.9
Q ss_pred CCCCeeecCCCCCCCCC
Q 009079 498 QQLRILDLSQNSLQSIP 514 (544)
Q Consensus 498 ~~L~~L~l~~n~l~~l~ 514 (544)
++|+.|++++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666665543
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.37 E-value=1.9 Score=23.18 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=8.1
Q ss_pred CCCCcEEEccCC-CCCC
Q 009079 402 CASLQTLILSRN-KIKD 417 (544)
Q Consensus 402 ~~~L~~L~l~~~-~l~~ 417 (544)
|++|++|++++| .+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 345555555555 3444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.86 E-value=0.85 Score=45.29 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=31.4
Q ss_pred CccCceEeecCC--cccccCcc-ccCCCCCCeeecCCCCCCC---CC-ccc----ccceeeeEec
Q 009079 474 LPHLQELYLRRM--QLREAPTD-ILRLQQLRILDLSQNSLQS---IP-EVT----YIFVMLQKKS 527 (544)
Q Consensus 474 l~~L~~L~ls~n--~l~~i~~~-~~~~~~L~~L~l~~n~l~~---l~-~~l----~~~~~L~~l~ 527 (544)
.|+|+.|+|++| .+.+.++. -.....|++|.+.||++.. .+ +.+ ...|+|..||
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 477777788777 44433221 1235678888888888762 11 112 2566666665
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.52 E-value=4.2 Score=22.37 Aligned_cols=15 Identities=53% Similarity=0.623 Sum_probs=8.4
Q ss_pred CCCcEEEccCCCCCC
Q 009079 403 ASLQTLILSRNKIKD 417 (544)
Q Consensus 403 ~~L~~L~l~~~~l~~ 417 (544)
++|++|+|++|.+++
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 345566666665554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.11 E-value=36 Score=33.73 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=28.2
Q ss_pred eeEEEccCCccccCCc----CCccCCCCCEEEccCCcCC-----cCchhhhCCCCCCEEECCCCcC
Q 009079 209 LIRLDLHQNRILSIPS----SISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQL 265 (544)
Q Consensus 209 L~~L~l~~~~~~~l~~----~~~~~~~L~~l~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i 265 (544)
+..+.++.+....-+. .....+.+..++++++... -+|.++.....++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 3444555554442221 2233455666666666554 2344444455566665555544
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.57 E-value=5 Score=40.14 Aligned_cols=61 Identities=36% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCccEEEcCCCCCCCC---ChhhhcCCCCcEEEccCC--CCCCC-CHHHHhCCCCCCEEECCCCCCC
Q 009079 379 AGEITKLDLSRNSIQEL---PPELSSCASLQTLILSRN--KIKDW-PDAILTSLSSLSCLKLDNNPLR 440 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~l~~~--~l~~~-~~~~l~~~~~L~~L~l~~n~i~ 440 (544)
.+.+..+.+++|++..+ .......|+|+.|+|++| .+... ....+ +..-|++|-+.||++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccc
Confidence 34566677777765543 223455677777777777 33221 11111 2355677777777764
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.09 E-value=1.1e+02 Score=30.54 Aligned_cols=242 Identities=20% Similarity=0.128 Sum_probs=128.7
Q ss_pred hcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCC-C
Q 009079 10 TSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS-E 82 (544)
Q Consensus 10 ~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-~ 82 (544)
.++++|++.+.+. ..|..+..- .--++++.|.+. +++. =..=..+.+++++.+... +
T Consensus 166 r~r~~dls~npi~dkvpihl~~p---------------~~pl~lr~c~lsskfis~l~~-qsg~~~lteldls~n~~Kdd 229 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQP---------------GNPLSLRVCELSSKFISKLLI-QSGRLWLTELDLSTNGGKDD 229 (553)
T ss_pred hhhhhccCCCcccccCCccccCC---------------CCccchhhhhhhhhHHHHhhh-hhccccccccccccCCCCcc
Confidence 4578899988876 455444332 111556666554 2220 111135788899887654 5
Q ss_pred cchh---hhCCCCccEEEccCCccc--cC--CccccccCCccEEEcCCCCCc-----cCCc----ccccCcCCCEEEcCC
Q 009079 83 LPAA---IGELHMLKSLDVSFNSIM--KI--PDEIGSATALVKFDCSSNQLK-----ELPS----SLGRCLNLSDFKASN 146 (544)
Q Consensus 83 l~~~---~~~~~~L~~L~l~~~~l~--~l--~~~~~~~~~L~~L~l~~~~~~-----~~~~----~~~~~~~L~~L~l~~ 146 (544)
+|.. ...-.-++.++.+...++ .+ +-..+..++|++.+++.|..+ ..+. .++.-.++ +|++.+
T Consensus 230 ip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~ 308 (553)
T KOG4242|consen 230 IPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRP 308 (553)
T ss_pred chhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-cccccc
Confidence 5542 233345788888877665 22 223556678888888776543 2222 33344556 777776
Q ss_pred Cccc--cCCccccCC-----CCceEEEecCCcccc--ccchhhcCccccceEEcCCCcCCCCc---ccccCCCceeEEEc
Q 009079 147 NCIT--SLPEDLADC-----SKMSKLDVEGNKLTV--LSNNLIASWTMLTELIASKNLLNGMP---ETIGSLSRLIRLDL 214 (544)
Q Consensus 147 ~~~~--~~~~~~~~~-----~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l 214 (544)
+... .....+-.+ ..=-+++++.|+... ........ .+++++...++....-- ......++.+.+.+
T Consensus 309 ~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~a 387 (553)
T KOG4242|consen 309 RYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKA 387 (553)
T ss_pred ccCchhhhhhhhcccccccccccccCChhhccccccchhhccccc-eeeeEeeccccccccccccccceeeccccccccc
Confidence 6543 111111110 111144555554442 11111222 35888888887764211 13444456777777
Q ss_pred cCCccc--cCCcCC--------ccCCCCCEEEccCCcCCc-Cc---hhhhCCCCCCEEECCCCcCcccc
Q 009079 215 HQNRIL--SIPSSI--------SGCCSLAEFYMGNNALSA-LP---AELGKLSKLGTLDLHSNQLKEYC 269 (544)
Q Consensus 215 ~~~~~~--~l~~~~--------~~~~~L~~l~l~~~~~~~-l~---~~l~~~~~L~~L~l~~~~i~~~~ 269 (544)
...... ..+... ...--+..+.++.+.... .. ..+..-+.+..+++++|......
T Consensus 388 grs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~g 456 (553)
T KOG4242|consen 388 GRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGG 456 (553)
T ss_pred cccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCC
Confidence 654332 121111 122346677788887772 22 23456688999999999776543
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.35 E-value=16 Score=44.39 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=24.0
Q ss_pred ecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 457 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
||++|+|+.+....|..+++|+.|+|++|-+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777788777777777778888888777544
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.15 E-value=79 Score=39.04 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=18.2
Q ss_pred EcCCCCCCCCChh-hhcCCCCcEEEccCCCCC
Q 009079 386 DLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416 (544)
Q Consensus 386 ~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 416 (544)
||++|+|+.++.. |..+++|+.|+|++|-+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 3556666665543 455666666666666544
Done!