Query 009079
Match_columns 544
No_of_seqs 230 out of 2763
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 18:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 2E-50 6.9E-55 422.0 32.9 478 11-539 13-563 (606)
2 3t6q_A CD180 antigen; protein- 100.0 2E-49 6.9E-54 414.4 39.7 480 11-539 14-565 (606)
3 3rgz_A Protein brassinosteroid 100.0 8.9E-50 3.1E-54 426.0 34.6 508 4-536 121-719 (768)
4 3rgz_A Protein brassinosteroid 100.0 1.7E-49 5.9E-54 423.8 33.5 507 3-536 94-695 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 7E-48 2.4E-52 408.1 42.0 495 9-538 25-626 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 2E-46 7E-51 396.9 42.8 508 11-537 6-600 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-47 4.2E-52 401.0 29.1 456 9-516 32-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 6.2E-47 2.1E-51 395.6 34.0 459 9-515 33-564 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 9.4E-47 3.2E-51 391.7 31.2 474 11-538 9-535 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 6.1E-45 2.1E-49 392.7 33.5 490 12-539 7-565 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 7.2E-45 2.5E-49 375.5 29.8 471 9-538 5-514 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 1.8E-44 6E-49 374.6 27.5 464 8-520 27-540 (570)
13 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-44 1.2E-48 367.6 25.4 456 12-538 3-485 (520)
14 4eco_A Uncharacterized protein 100.0 4.7E-43 1.6E-47 365.6 23.8 405 45-513 81-602 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 6.8E-42 2.3E-46 353.3 31.8 452 9-513 26-512 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-41 4.2E-46 358.3 34.3 480 12-539 34-585 (635)
17 4ecn_A Leucine-rich repeat pro 100.0 4.1E-42 1.4E-46 363.9 27.9 433 45-534 323-864 (876)
18 3j0a_A TOLL-like receptor 5; m 100.0 8.1E-41 2.8E-45 360.6 34.1 467 48-536 7-541 (844)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-41 4.4E-46 348.6 25.5 426 9-514 21-484 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-41 1.1E-45 348.3 27.7 449 47-538 33-514 (562)
21 4eco_A Uncharacterized protein 100.0 3.2E-41 1.1E-45 351.9 25.7 413 9-490 81-602 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 6.2E-41 2.1E-45 354.9 28.0 435 9-512 323-865 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-39 1.1E-43 333.5 25.2 443 10-513 32-512 (562)
24 1jl5_A Outer protein YOPM; leu 100.0 9.7E-39 3.3E-43 318.6 27.2 407 44-539 10-434 (454)
25 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-38 8.4E-43 333.1 30.0 463 9-523 52-592 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 2.5E-38 8.6E-43 315.6 28.2 406 8-511 10-429 (454)
27 1o6v_A Internalin A; bacterial 100.0 1.9E-36 6.6E-41 305.0 35.3 347 46-493 47-393 (466)
28 1o6v_A Internalin A; bacterial 100.0 4.8E-36 1.6E-40 302.1 33.6 350 90-517 45-394 (466)
29 3v47_A TOLL-like receptor 5B a 100.0 1.7E-35 5.9E-40 298.0 30.7 381 47-513 12-410 (455)
30 3v47_A TOLL-like receptor 5B a 100.0 9.4E-36 3.2E-40 300.0 26.4 137 402-538 274-412 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-34 5.1E-39 288.6 33.0 222 44-284 41-263 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-35 1E-39 293.6 24.7 231 62-311 36-267 (457)
33 4fmz_A Internalin; leucine ric 100.0 1.4E-32 4.9E-37 266.3 32.3 307 64-464 40-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 1.7E-32 5.9E-37 265.7 29.9 305 112-511 42-346 (347)
35 2id5_A Lingo-1, leucine rich r 100.0 1.6E-32 5.4E-37 277.8 27.7 312 117-488 14-333 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.8E-32 9.5E-37 268.5 25.0 305 136-511 44-352 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 2.5E-31 8.4E-36 269.1 27.3 309 95-464 15-333 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 5.9E-31 2E-35 259.0 25.4 150 68-219 45-198 (390)
39 3oja_B Anopheles plasmodium-re 100.0 4.9E-31 1.7E-35 273.6 24.6 305 136-534 50-358 (597)
40 1xku_A Decorin; proteoglycan, 100.0 1.9E-29 6.7E-34 242.2 27.2 288 183-532 30-330 (330)
41 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.6E-34 263.6 25.6 235 68-310 51-290 (597)
42 1xku_A Decorin; proteoglycan, 100.0 5.6E-29 1.9E-33 239.0 24.7 281 9-309 31-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.5E-33 236.6 25.8 286 138-509 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 3.9E-31 1.3E-35 266.8 8.3 290 9-310 3-353 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-32 4.5E-37 277.5 -2.9 348 91-511 3-411 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 8E-29 2.7E-33 238.1 23.6 191 115-311 34-230 (332)
47 3g06_A SSPH2 (leucine-rich rep 100.0 2.2E-26 7.6E-31 236.1 28.2 258 185-512 41-298 (622)
48 3ogk_B Coronatine-insensitive 99.9 1.5E-29 5E-34 263.6 2.8 421 61-530 66-547 (592)
49 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-26 1.3E-30 234.4 27.0 259 9-312 40-298 (622)
50 3ogk_B Coronatine-insensitive 99.9 2E-29 6.8E-34 262.6 -0.7 407 71-536 53-528 (592)
51 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-26 5E-31 219.8 15.9 241 45-286 50-302 (313)
52 2p1m_B Transport inhibitor res 99.9 3E-29 1E-33 261.4 -4.3 89 399-488 428-519 (594)
53 2z80_A TOLL-like receptor 2, v 99.9 5.1E-26 1.7E-30 220.5 18.6 265 10-311 32-314 (353)
54 1ogq_A PGIP-2, polygalacturona 99.9 3.5E-26 1.2E-30 217.1 16.6 240 68-309 50-302 (313)
55 2z66_A Variable lymphocyte rec 99.9 1.2E-25 4E-30 213.5 19.0 240 12-266 10-261 (306)
56 4fcg_A Uncharacterized protein 99.9 1.3E-25 4.3E-30 214.5 18.8 223 45-268 81-316 (328)
57 4fcg_A Uncharacterized protein 99.9 7.6E-26 2.6E-30 216.1 17.0 224 9-245 81-316 (328)
58 2z80_A TOLL-like receptor 2, v 99.9 2.6E-26 9E-31 222.5 13.9 274 183-537 30-317 (353)
59 2z66_A Variable lymphocyte rec 99.9 1.4E-25 4.7E-30 213.0 17.9 242 187-488 10-261 (306)
60 3zyj_A Leucine-rich repeat-con 99.9 1.8E-24 6E-29 216.1 22.9 243 209-513 45-294 (440)
61 2p1m_B Transport inhibitor res 99.9 3.6E-28 1.2E-32 253.3 -4.2 434 47-533 45-543 (594)
62 3zyi_A Leucine-rich repeat-con 99.9 1.9E-24 6.6E-29 216.5 22.2 245 209-515 56-307 (452)
63 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-24 7.1E-29 202.5 20.7 218 12-266 14-238 (285)
64 1wwl_A Monocyte differentiatio 99.9 1.1E-25 3.8E-30 213.8 11.5 198 89-288 93-309 (312)
65 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-24 8E-29 202.2 20.1 242 233-534 14-261 (285)
66 3zyj_A Leucine-rich repeat-con 99.9 6.9E-24 2.4E-28 211.7 22.7 242 186-488 45-292 (440)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-24 5.8E-29 206.1 16.3 236 11-266 12-250 (317)
68 3zyi_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 207.4 24.1 240 188-488 58-303 (452)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2E-24 6.7E-29 205.7 12.5 255 46-308 11-272 (317)
70 1wwl_A Monocyte differentiatio 99.9 1.1E-24 3.6E-29 207.0 8.9 240 9-267 43-310 (312)
71 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.8E-27 188.9 21.2 134 379-512 84-219 (270)
72 3oja_A Leucine-rich immune mol 99.9 2.5E-24 8.6E-29 216.7 10.7 148 379-529 119-270 (487)
73 1p9a_G Platelet glycoprotein I 99.9 5.6E-23 1.9E-27 192.4 18.2 204 250-514 7-211 (290)
74 2z62_A TOLL-like receptor 4, v 99.9 1E-22 3.5E-27 190.0 18.6 217 12-243 10-237 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 4.6E-23 1.6E-27 192.4 16.1 159 379-537 75-240 (276)
76 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.4E-27 189.4 18.8 178 359-538 33-212 (290)
77 3oja_A Leucine-rich immune mol 99.9 1E-22 3.4E-27 205.0 17.5 215 44-266 33-250 (487)
78 2o6q_A Variable lymphocyte rec 99.9 1.5E-21 5.2E-26 181.2 22.7 160 379-538 60-222 (270)
79 1h6u_A Internalin H; cell adhe 99.9 1E-21 3.4E-26 185.8 17.8 197 66-271 39-235 (308)
80 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.4E-26 183.2 20.1 195 44-247 40-234 (308)
81 3m19_A Variable lymphocyte rec 99.9 2E-21 6.7E-26 178.4 18.2 178 357-536 14-194 (251)
82 3rfs_A Internalin B, repeat mo 99.9 4.4E-21 1.5E-25 178.2 16.8 137 379-521 108-246 (272)
83 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.5E-26 177.2 14.1 192 69-263 32-236 (239)
84 3rfs_A Internalin B, repeat mo 99.9 1E-20 3.4E-25 175.8 18.6 179 357-537 41-221 (272)
85 2xwt_C Thyrotropin receptor; s 99.9 3.3E-21 1.1E-25 175.6 14.9 192 45-240 31-236 (239)
86 4glp_A Monocyte differentiatio 99.9 3.1E-21 1.1E-25 183.0 13.0 226 253-536 64-309 (310)
87 3goz_A Leucine-rich repeat-con 99.8 1.1E-21 3.7E-26 190.5 7.7 78 190-267 4-94 (362)
88 2ca6_A RAN GTPase-activating p 99.8 3.6E-21 1.2E-25 188.7 9.3 226 44-269 31-319 (386)
89 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 5.7E-26 191.1 6.4 246 45-290 9-318 (386)
90 3m19_A Variable lymphocyte rec 99.8 2.8E-19 9.4E-24 164.0 19.3 136 377-512 56-193 (251)
91 4glp_A Monocyte differentiatio 99.8 3.3E-20 1.1E-24 175.9 13.2 219 45-266 64-307 (310)
92 3goz_A Leucine-rich repeat-con 99.8 6.9E-21 2.4E-25 184.8 8.3 244 13-268 2-299 (362)
93 2ast_B S-phase kinase-associat 99.8 1.3E-20 4.5E-25 181.3 8.7 240 47-289 49-307 (336)
94 3e6j_A Variable lymphocyte rec 99.8 2.5E-19 8.5E-24 161.5 15.9 155 382-538 21-176 (229)
95 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.5E-24 169.1 14.4 172 357-538 46-217 (291)
96 1h6t_A Internalin B; cell adhe 99.8 5.2E-19 1.8E-23 165.6 16.3 168 45-243 46-213 (291)
97 2ast_B S-phase kinase-associat 99.8 4.2E-20 1.5E-24 177.7 8.8 60 207-266 70-131 (336)
98 2xot_A Amphoterin-induced prot 99.8 1E-19 3.5E-24 176.3 11.4 179 358-538 19-206 (361)
99 2v9t_B SLIT homolog 2 protein 99.8 4.4E-19 1.5E-23 158.8 14.0 154 359-514 13-168 (220)
100 3cvr_A Invasion plasmid antige 99.8 9.8E-19 3.4E-23 177.2 18.2 186 46-252 60-253 (571)
101 2o6s_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 156.8 13.5 170 358-535 8-179 (208)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 5.2E-19 1.8E-23 158.3 13.0 155 358-514 12-169 (220)
103 3cvr_A Invasion plasmid antige 99.8 1.6E-18 5.4E-23 175.7 18.0 180 68-268 59-245 (571)
104 4ezg_A Putative uncharacterize 99.8 2.6E-19 8.9E-24 157.6 9.9 154 377-535 41-195 (197)
105 1xeu_A Internalin C; cellular 99.8 5.2E-19 1.8E-23 162.9 12.3 169 358-537 20-188 (263)
106 4ay9_X Follicle-stimulating ho 99.8 1.5E-18 5E-23 167.5 15.4 233 12-263 12-256 (350)
107 2v9t_B SLIT homolog 2 protein 99.8 1.7E-18 5.7E-23 155.0 14.2 156 382-539 13-170 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.2E-23 154.3 13.4 156 382-539 13-171 (220)
109 4ay9_X Follicle-stimulating ho 99.8 8.1E-18 2.8E-22 162.2 17.5 209 48-260 12-230 (350)
110 1m9s_A Internalin B; cell inva 99.8 3.9E-18 1.3E-22 174.9 15.6 170 357-536 43-212 (605)
111 2o6s_A Variable lymphocyte rec 99.8 9.9E-18 3.4E-22 149.0 15.9 155 381-537 8-164 (208)
112 1m9s_A Internalin B; cell inva 99.8 8.6E-18 2.9E-22 172.3 16.8 172 44-223 42-213 (605)
113 1xeu_A Internalin C; cellular 99.7 3.2E-18 1.1E-22 157.6 10.9 169 45-222 19-187 (263)
114 4fs7_A Uncharacterized protein 99.7 5.2E-17 1.8E-21 159.3 19.8 119 379-503 275-393 (394)
115 3e6j_A Variable lymphocyte rec 99.7 2.7E-17 9.1E-22 148.2 15.5 156 356-514 18-175 (229)
116 4ezg_A Putative uncharacterize 99.7 7.2E-18 2.5E-22 148.3 9.7 151 357-512 44-195 (197)
117 3sb4_A Hypothetical leucine ri 99.7 3.5E-17 1.2E-21 156.4 12.0 103 401-505 224-328 (329)
118 1dce_A Protein (RAB geranylger 99.7 6.5E-19 2.2E-23 179.6 -1.9 178 42-222 346-548 (567)
119 2xot_A Amphoterin-induced prot 99.7 8E-17 2.7E-21 155.9 12.4 153 382-536 20-178 (361)
120 4fs7_A Uncharacterized protein 99.7 1.4E-15 4.9E-20 149.0 20.3 144 376-526 249-393 (394)
121 1dce_A Protein (RAB geranylger 99.7 5.3E-18 1.8E-22 172.9 -0.3 193 7-214 347-567 (567)
122 1w8a_A SLIT protein; signaling 99.7 3.1E-16 1.1E-20 137.0 10.7 128 359-488 10-139 (192)
123 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.8E-21 136.2 8.1 134 380-515 24-164 (168)
124 4fdw_A Leucine rich hypothetic 99.6 1E-14 3.5E-19 142.1 21.2 127 381-511 249-383 (401)
125 4gt6_A Cell surface protein; l 99.6 7.2E-15 2.5E-19 144.0 20.1 130 398-533 260-390 (394)
126 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 8.8E-20 131.0 14.0 127 360-488 13-139 (193)
127 4fdw_A Leucine rich hypothetic 99.6 9.6E-15 3.3E-19 142.3 19.6 126 403-532 248-381 (401)
128 3sb4_A Hypothetical leucine ri 99.6 8.8E-16 3E-20 146.7 11.8 101 425-527 224-327 (329)
129 1w8a_A SLIT protein; signaling 99.6 5.9E-16 2E-20 135.2 9.7 148 382-531 10-159 (192)
130 2wfh_A SLIT homolog 2 protein 99.6 2.7E-15 9.2E-20 130.9 13.7 130 382-514 12-142 (193)
131 2ell_A Acidic leucine-rich nuc 99.6 1E-15 3.4E-20 130.9 10.5 140 353-493 20-165 (168)
132 1a9n_A U2A', U2A'; complex (nu 99.6 3.6E-16 1.2E-20 134.7 6.0 131 400-534 16-153 (176)
133 2o6r_A Variable lymphocyte rec 99.6 9.1E-15 3.1E-19 126.0 14.1 130 382-513 9-139 (177)
134 2je0_A Acidic leucine-rich nuc 99.6 4.6E-16 1.6E-20 130.1 5.5 124 380-529 17-148 (149)
135 4b8c_D Glucose-repressible alc 99.6 8.2E-16 2.8E-20 161.8 8.0 196 9-217 173-369 (727)
136 4gt6_A Cell surface protein; l 99.6 8E-14 2.7E-18 136.6 20.4 127 379-510 264-390 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 6E-20 130.3 7.2 134 376-511 15-153 (176)
138 2je0_A Acidic leucine-rich nuc 99.6 7E-15 2.4E-19 122.8 8.8 128 355-483 15-148 (149)
139 2o6r_A Variable lymphocyte rec 99.6 4.8E-14 1.6E-18 121.5 14.0 131 357-489 7-138 (177)
140 4b8c_D Glucose-repressible alc 99.5 4.7E-14 1.6E-18 148.4 9.0 176 357-535 173-355 (727)
141 4h09_A Hypothetical leucine ri 99.5 6.7E-12 2.3E-16 122.3 23.3 105 378-485 238-343 (379)
142 1ds9_A Outer arm dynein; leuci 99.5 3.8E-15 1.3E-19 131.0 -1.1 143 46-190 24-180 (198)
143 1ds9_A Outer arm dynein; leuci 99.4 5.4E-16 1.8E-20 136.4 -7.0 150 382-538 25-189 (198)
144 4h09_A Hypothetical leucine ri 99.4 1.4E-11 4.7E-16 120.1 22.7 98 377-477 260-358 (379)
145 3g39_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 111.9 12.0 106 381-488 10-115 (170)
146 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 112.2 12.0 107 383-491 15-121 (174)
147 2r9u_A Variable lymphocyte rec 99.4 7.3E-13 2.5E-17 113.2 9.8 108 405-515 14-122 (174)
148 3g39_A Variable lymphocyte rec 99.4 9.7E-13 3.3E-17 112.1 10.2 109 404-515 10-119 (170)
149 3un9_A NLR family member X1; l 99.3 6.3E-14 2.2E-18 135.2 -3.6 182 354-536 69-285 (372)
150 3un9_A NLR family member X1; l 99.3 1.2E-13 4.1E-18 133.3 -1.9 157 379-535 71-253 (372)
151 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.9E-15 111.4 9.5 105 383-489 11-117 (347)
152 2ifg_A High affinity nerve gro 99.1 1.8E-10 6.1E-15 110.8 10.2 105 360-466 11-118 (347)
153 2ra8_A Uncharacterized protein 98.8 1E-09 3.4E-14 104.8 3.2 171 357-532 139-341 (362)
154 2ra8_A Uncharacterized protein 98.8 7.2E-10 2.4E-14 105.8 2.1 150 355-509 170-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.8 4.2E-09 1.5E-13 90.7 5.9 107 44-150 35-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 1.1E-08 3.6E-13 88.1 6.5 116 59-174 27-165 (185)
157 3e4g_A ATP synthase subunit S, 98.5 6.3E-09 2.2E-13 86.9 -1.8 82 404-485 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.3 2.7E-07 9.4E-12 77.0 2.4 87 379-465 60-154 (176)
159 3rw6_A Nuclear RNA export fact 98.1 1.9E-06 6.6E-11 77.7 4.9 62 65-127 167-233 (267)
160 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 7.9E-11 77.2 5.0 76 44-120 169-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 6.1E-06 2.1E-10 70.2 5.7 105 44-148 40-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 2E-05 6.9E-10 67.0 6.1 114 60-173 33-170 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00049 1.7E-08 54.6 5.4 56 455-513 12-70 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.2E-08 50.3 5.8 55 384-440 12-68 (130)
165 2lz0_A Uncharacterized protein 94.4 0.075 2.6E-06 39.5 5.6 48 437-485 6-53 (100)
166 2lz0_A Uncharacterized protein 92.7 0.23 7.7E-06 36.8 5.7 49 412-461 5-53 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-50 Score=422.02 Aligned_cols=478 Identities=20% Similarity=0.200 Sum_probs=387.5
Q ss_pred cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhhh
Q 009079 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (544)
Q Consensus 11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~ 88 (544)
-++++|++++++.+|.++. +++++|+++++.+..++. .|.++++|++|++++|.++.+ |.+|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence 3679999999999997664 459999999999987765 899999999999999999877 55889
Q ss_pred CCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccc--cCCccccCCCCceE
Q 009079 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSK 164 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~ 164 (544)
++++|++|++++|.++.+ |..+..+++|++|++++|.++.++ ..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 999999999999999877 777999999999999999998776 57889999999999999987 46888999999999
Q ss_pred EEecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccc--cCCc--------------
Q 009079 165 LDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS-------------- 224 (544)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~l~~-------------- 224 (544)
|++++|.++.+....++.+.+|+ ++++++|.++.++.......+|+.|++++|.+. ..+.
T Consensus 158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 99999999988777777777665 799999998877765555558999998887653 1111
Q ss_pred ------------------------------------------CCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCC
Q 009079 225 ------------------------------------------SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 262 (544)
Q Consensus 225 ------------------------------------------~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~ 262 (544)
.+..+++|+.++++++.+..+| .+..+++|++|++++
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIR 316 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEES
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEccc
Confidence 1444566666777766666666 566666777777777
Q ss_pred CcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccc
Q 009079 263 NQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342 (544)
Q Consensus 263 ~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (544)
|.+..++.. ....|++|++++|...... .+..+++|+++++++|.+.....
T Consensus 317 n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~--------------------------- 367 (606)
T 3vq2_A 317 CQLKQFPTL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGC--------------------------- 367 (606)
T ss_dssp CCCSSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEE---------------------------
T ss_pred ccCcccccC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcc---------------------------
Confidence 766666633 3444777777766433311 35566677777777766543310
Q ss_pred cchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCC--hhhhcCCCCcEEEccCCCCCCCCH
Q 009079 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPD 420 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~ 420 (544)
........+.++++++++|.+..++..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++...+
T Consensus 368 ------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 368 ------CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp ------CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred ------hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 001122346799999999999988888888999999999999988854 368899999999999999998877
Q ss_pred HHHhCCCCCCEEECCCCCCCc-CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc-CccccCCC
Q 009079 421 AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQ 498 (544)
Q Consensus 421 ~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~ 498 (544)
..+..+++|++|++++|++.+ +....+..+++|+.|++++|.++.+.+..++.+++|+.|++++|.++.+ |..+..++
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 788999999999999999987 4556689999999999999999999999999999999999999999966 77888999
Q ss_pred CCCeeecCCCCCCCCCcccccce-eeeEeccCCccccccccc
Q 009079 499 QLRILDLSQNSLQSIPEVTYIFV-MLQKKSINTELVDKNQQF 539 (544)
Q Consensus 499 ~L~~L~l~~n~l~~l~~~l~~~~-~L~~l~l~~n~~~~~~~~ 539 (544)
+|+.|++++|+++.+|+.+..++ +|+.|++++|++.+++..
T Consensus 522 ~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999998888887 599999999999987653
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-49 Score=414.42 Aligned_cols=480 Identities=19% Similarity=0.246 Sum_probs=380.1
Q ss_pred cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCc-chhhh
Q 009079 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (544)
Q Consensus 11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~ 88 (544)
-+++||++..++.+|..+.. ++++|++++|.++.+ +..|.++++|++|++++|.+..+ |.+|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~---------------~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN---------------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT---------------TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred CceEECCCCCcccCcCCCCC---------------cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence 35788888888888866543 488888888888866 45788888888888888888765 56788
Q ss_pred CCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccC-CcccccCcCCCEEEcCCCccccCC-ccccCCCCceEE
Q 009079 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL 165 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 165 (544)
++++|++|++++|.++.+ |..+..+++|++|++++|.++.+ +..++++++|++|++++|.+..++ ..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 888888888888888755 55688888888888888888876 356778888888888888887652 334457888888
Q ss_pred EecCCccccccchhhcCccccc--eEEcCCCcCCCCcccccCCC------------------------------------
Q 009079 166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLS------------------------------------ 207 (544)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~------------------------------------ 207 (544)
++++|.++.+....++.+++|+ ++++++|.+..++.......
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 8888888887777788888888 77888887765433222222
Q ss_pred ----------------ceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccch
Q 009079 208 ----------------RLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270 (544)
Q Consensus 208 ----------------~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~ 270 (544)
+|+.+++++|.++.++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+..
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence 57777777777776654 3777888888888888888888888888888888888888887644
Q ss_pred hcc--cccccEEEccCCCCCC-CCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchh
Q 009079 271 EAC--QLRLSVLDLSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346 (544)
Q Consensus 271 ~~~--~~~L~~L~l~~~~l~~-l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (544)
..+ ..+|++|++++|.+.. ++. .+..+++|+++++++|.+.......
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------------------- 369 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN----------------------------- 369 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST-----------------------------
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc-----------------------------
Confidence 322 2448888888887764 444 3778888888888888876543100
Q ss_pred hhhhhhhcccccceeeecCCCccCCC-chhhccCCCccEEEcCCCCCCCC-C-hhhhcCCCCcEEEccCCCCCCCCHHHH
Q 009079 347 DLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQEL-P-PELSSCASLQTLILSRNKIKDWPDAIL 423 (544)
Q Consensus 347 ~~~~~~~~~~~~l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l-~-~~~~~~~~L~~L~l~~~~l~~~~~~~l 423 (544)
......+.++++++++|.+..+ +..+..+++|++|++++|.++.. + ..+..+++|++|++++|.++...+..+
T Consensus 370 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 370 ----LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp ----TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred ----hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 0112235789999999998854 55677789999999999998874 3 348899999999999999998888888
Q ss_pred hCCCCCCEEECCCCCCCcC---CCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc-cCccccCCCC
Q 009079 424 TSLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQ 499 (544)
Q Consensus 424 ~~~~~L~~L~l~~n~i~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-i~~~~~~~~~ 499 (544)
..+++|++|++++|++.+. ....+..+++|+.|++++|.++.+.+..|+.+++|+.|++++|.++. .|..+.+++.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 9999999999999999862 23568899999999999999999999999999999999999999984 4677888999
Q ss_pred CCeeecCCCCCCCC-CcccccceeeeEeccCCccccccccc
Q 009079 500 LRILDLSQNSLQSI-PEVTYIFVMLQKKSINTELVDKNQQF 539 (544)
Q Consensus 500 L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~~~~~~ 539 (544)
| .|++++|+++.+ |..+..+++|+.+++++|++.+++..
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9 999999999977 55688999999999999999988763
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.9e-50 Score=426.03 Aligned_cols=508 Identities=27% Similarity=0.295 Sum_probs=365.7
Q ss_pred HHHHhhhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHh---hcCCCCCCEEEcCCC
Q 009079 4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KED---LRNLPLLTVLNVSHN 78 (544)
Q Consensus 4 ~~~~~~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~---~~~~~~L~~L~l~~~ 78 (544)
.+..++.+++||+++|.+. .+|...+ .++++|++|++++|.+... +.. +.++++|++|++++|
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGG------------LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSC------------CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHh------------ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 5778889999999999887 3333222 2257788888888888743 334 678888888888888
Q ss_pred CCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCccccCCcccc
Q 009079 79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLA 157 (544)
Q Consensus 79 ~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 157 (544)
.+.... .+..+++|++|++++|.++..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.......
T Consensus 189 ~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~- 266 (768)
T 3rgz_A 189 KISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 266 (768)
T ss_dssp EEESCC-BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-
T ss_pred cccccC-CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-
Confidence 776443 236778888888888877754344778888888888888777 45567777888888888888776332222
Q ss_pred CCCCceEEEecCCccc-cccchhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccc-cCCcC-CccCCCCC
Q 009079 158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSS-ISGCCSLA 233 (544)
Q Consensus 158 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~ 233 (544)
.+++|++|++++|.++ .++......+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 6677777777777776 344433333477777777777775 55667777777777777777776 56544 66777777
Q ss_pred EEEccCCcCC-cCchhhhCCC-CCCEEECCCCcCccc-chhcc---cccccEEEccCCCCCC-CCccccCCCCcceeccC
Q 009079 234 EFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKEY-CVEAC---QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLT 306 (544)
Q Consensus 234 ~l~l~~~~~~-~l~~~l~~~~-~L~~L~l~~~~i~~~-~~~~~---~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~ 306 (544)
.|++++|.+. .+|..+..++ +|+.|++++|.+.+. +.... ...|++|++++|.+.+ +|..+..+++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 7777777776 6666666665 777777777776532 22211 2347777777776664 56666777777777777
Q ss_pred CCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC-CCchhhccCCCccEE
Q 009079 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKL 385 (544)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L 385 (544)
+|.+.......+... + .++.+. +.. ... ...........+.++++++++|.+. .+|..+..+++|++|
T Consensus 427 ~N~l~~~~p~~l~~l-~-~L~~L~--L~~-----n~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSL-S-KLRDLK--LWL-----NML--EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp SSEEESCCCGGGGGC-T-TCCEEE--CCS-----SCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCcccCcccHHHhcC-C-CCCEEE--CCC-----Ccc--cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 776543211111100 0 000000 000 000 0000111223467899999999988 778888889999999
Q ss_pred EcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCc-CCCC------------------
Q 009079 386 DLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPSD------------------ 445 (544)
Q Consensus 386 ~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~-~~~~------------------ 445 (544)
++++|.+++ +|.++..+++|++|++++|.++...+..+..+++|+.|++++|++.+ ++..
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 999999885 88889999999999999999987666678999999999999998752 2211
Q ss_pred ---------------------------------------------------ccCCCCCcceEecCCcccCCCCCCCCCCC
Q 009079 446 ---------------------------------------------------GFKDIPMLQILDLSYNIASLPENPPFSSL 474 (544)
Q Consensus 446 ---------------------------------------------------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 474 (544)
.+..+++|+.|++++|+++...+..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 23446789999999999999999999999
Q ss_pred ccCceEeecCCccc-ccCccccCCCCCCeeecCCCCCC-CCCcccccceeeeEeccCCcccccc
Q 009079 475 PHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVMLQKKSINTELVDKN 536 (544)
Q Consensus 475 ~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~l~l~~n~~~~~ 536 (544)
+.|+.|+|++|.++ .+|..+..+++|+.||+++|+++ .+|+.+..+++|+.|++++|.+++.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 99999999999998 88999999999999999999999 7899999999999999999998854
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-49 Score=423.79 Aligned_cols=507 Identities=25% Similarity=0.300 Sum_probs=411.0
Q ss_pred HHHHHhhhcceeEcCCCccc-ccch--HHhhcccccCCCCceeeecCccEEecccCccc-chhHhh-cCCCCCCEEEcCC
Q 009079 3 RILKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSH 77 (544)
Q Consensus 3 ~~~~~~~~~~~l~ls~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~-~~~~~L~~L~l~~ 77 (544)
+.+..++.+++|||++|.+. .+|. .+. ++++|++|++++|.+. .+|..+ .++++|++|++++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-------------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLG-------------SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGG-------------GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHh-------------CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 34667889999999999988 4554 222 2688999999999887 445444 8999999999999
Q ss_pred CCCCCcc-hh---hhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccc-cC
Q 009079 78 NKLSELP-AA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SL 152 (544)
Q Consensus 78 ~~~~~l~-~~---~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~ 152 (544)
|.++..+ .. +.++++|++|++++|.++.... +..+++|++|++++|.+......++++++|++|++++|.+. .+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc
Confidence 9998553 34 7899999999999999885533 38899999999999999865555999999999999999998 56
Q ss_pred CccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCC-CCcccccCC-CceeEEEccCCccc-cCCcCCccC
Q 009079 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGC 229 (544)
Q Consensus 153 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~ 229 (544)
+..+..+++|++|++++|.+...... ..+++|++|++++|.+. .+|..+... ++|++|++++|.++ .+|..+..+
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred cHHHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 77899999999999999998864443 27899999999999997 778877664 99999999999998 678889999
Q ss_pred CCCCEEEccCCcCC-cCchh-hhCCCCCCEEECCCCcCc-ccchhccc--ccccEEEccCCCCCC-CCccccC--CCCcc
Q 009079 230 CSLAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGK--MTTLR 301 (544)
Q Consensus 230 ~~L~~l~l~~~~~~-~l~~~-l~~~~~L~~L~l~~~~i~-~~~~~~~~--~~L~~L~l~~~~l~~-l~~~l~~--~~~L~ 301 (544)
++|+.|++++|.+. .+|.. +..+++|++|++++|.+. .++..... .+|++|++++|.+.+ +++.+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 99999999999998 78765 899999999999999988 44444332 269999999999886 6666655 78999
Q ss_pred eeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC-CCchhhccCC
Q 009079 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAG 380 (544)
Q Consensus 302 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~ 380 (544)
+|++++|.+.......+.. . ..+........... ..........++++.+++++|.+. .+|..+..++
T Consensus 398 ~L~L~~n~l~~~~p~~l~~--------l-~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSN--------C-SELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp EEECCSSEEEEECCGGGGG--------C-TTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred EEECCCCccccccCHHHhc--------C-CCCCEEECcCCccc--CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 9999999876432211110 0 00000000000000 001111223468999999999998 7888888899
Q ss_pred CccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079 381 EITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (544)
Q Consensus 381 ~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 459 (544)
+|++|++++|.+++ +|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+.....+..+++|+.|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 99999999999985 88889999999999999999998777778999999999999999987666678999999999999
Q ss_pred CcccCCCCC----------------------------------------------------------------------C
Q 009079 460 YNIASLPEN----------------------------------------------------------------------P 469 (544)
Q Consensus 460 ~n~l~~~~~----------------------------------------------------------------------~ 469 (544)
+|.++...+ .
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 997763322 2
Q ss_pred CCCCCccCceEeecCCccc-ccCccccCCCCCCeeecCCCCCC-CCCcccccceeeeEeccCCcccccc
Q 009079 470 PFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVMLQKKSINTELVDKN 536 (544)
Q Consensus 470 ~~~~l~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~l~l~~n~~~~~ 536 (544)
.++.+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|+.++.++.|+.||+++|.+++.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 3555788999999999998 78999999999999999999999 7899999999999999999999854
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7e-48 Score=408.13 Aligned_cols=495 Identities=22% Similarity=0.233 Sum_probs=323.2
Q ss_pred hhcceeEcCCCcccccchHHhhcccccC------------CCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEc
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAG------------EGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNV 75 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l 75 (544)
+.+++||++++.++.+|...+..+..+. ..+.|.++++|++|++++|.+..+|. .|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 3566666666666666554444422210 01122334556666666666665554 4666666666666
Q ss_pred CCCCCCCcc-hhhhCCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccCCcc-c--ccCcCCCEEEcCCCccc
Q 009079 76 SHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSS-L--GRCLNLSDFKASNNCIT 150 (544)
Q Consensus 76 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~-~--~~~~~L~~L~l~~~~~~ 150 (544)
++|.+..++ .+|.++++|++|++++|.++.. +..+..+++|++|++++|.++.++.. + ..+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 666666554 3556666666666666655543 33455666666666666665544431 2 23456666666666555
Q ss_pred cCCc-cccCC---------------------------CCceEEEecCCccccccchhhcCccc--cceEEcCCCcCCCCc
Q 009079 151 SLPE-DLADC---------------------------SKMSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLNGMP 200 (544)
Q Consensus 151 ~~~~-~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~ 200 (544)
.++. .+..+ ++|++|+++++.+..+....+..++. |++|++++|.+..++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 3321 11111 34455555555555544444555544 778888877776553
Q ss_pred -ccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCC------cCch----hhhCCCCCCEEECCCCcCccc
Q 009079 201 -ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS------ALPA----ELGKLSKLGTLDLHSNQLKEY 268 (544)
Q Consensus 201 -~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~------~l~~----~l~~~~~L~~L~l~~~~i~~~ 268 (544)
..+..+++|++|++++|.+..+ +..+..+++|+.++++++... .+|. .+..+++|++|++++|.+..+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 5677777788888877777643 345555666666666554322 2221 344555555555555555544
Q ss_pred chhccc--ccccEEE----------------------------ccCCCCCCC-CccccCCCCcceeccCCCCCcc-cccc
Q 009079 269 CVEACQ--LRLSVLD----------------------------LSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT-LRSS 316 (544)
Q Consensus 269 ~~~~~~--~~L~~L~----------------------------l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~-~~~~ 316 (544)
....+. .+|++|+ +++|.+.++ +..+..+++|+.|++++|.+.. ++.
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 423 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG- 423 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-
Confidence 333221 2244444 444444442 3334455555555555554432 111
Q ss_pred ccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCc-hhhccCCCccEEEcCCCCCC--
Q 009079 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQ-- 393 (544)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~-- 393 (544)
......+.++++++++|.+..++ ..+..+++|+.|++++|.++
T Consensus 424 ----------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 424 ----------------------------------QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp ----------------------------------GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred ----------------------------------ccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 11122457899999999987554 45666899999999999875
Q ss_pred -CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCC--------CccCCCCCcceEecCCcccC
Q 009079 394 -ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS--------DGFKDIPMLQILDLSYNIAS 464 (544)
Q Consensus 394 -~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~--------~~l~~~~~L~~L~l~~n~l~ 464 (544)
.+|..+..+++|+.|++++|.++.+++..|..+++|++|++++|++..+.. ..+..+++|+.|++++|.++
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 367889999999999999999999998889999999999999999987532 23788999999999999999
Q ss_pred CCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCCCcc-cc-cceeeeEeccCCcccccccc
Q 009079 465 LPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIPEV-TY-IFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 465 ~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l~~~-l~-~~~~L~~l~l~~n~~~~~~~ 538 (544)
.+....|+.+++|+.|++++|.++.+|... ..+++|+.|++++|+++.+++. +. .+++|+.+++++|++.+++.
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 998888999999999999999999887764 5799999999999999988643 55 78999999999999999876
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-46 Score=396.93 Aligned_cols=508 Identities=22% Similarity=0.301 Sum_probs=313.5
Q ss_pred cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhhh
Q 009079 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (544)
Q Consensus 11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~ 88 (544)
-+.+||++++++.+|.++. +++++|+++++.+..++. .|.++++|++|++++|.++.+ |.++.
T Consensus 6 ~~~~~cs~~~L~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC---------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred CCeeECCCCCccccccccC---------------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence 3679999999999997654 357888888887776654 577788888888888777755 45777
Q ss_pred CCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccC-CccccCCCCceEE
Q 009079 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL 165 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L 165 (544)
++++|++|++++|.++.+|. .|..+++|++|++++|.++.++ ..++++++|++|++++|.+... +..+.++++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 78888888888887777765 4777888888888888777665 4577778888888888877644 3456677788888
Q ss_pred EecCCccccccchhhc--CccccceEEcCCCcCCCCc-ccccCC---------------------------CceeEEEcc
Q 009079 166 DVEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGSL---------------------------SRLIRLDLH 215 (544)
Q Consensus 166 ~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~l~~~---------------------------~~L~~L~l~ 215 (544)
++++|.++.+....+. .+++|++|++++|.+..++ ..+..+ ++|+.|+++
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 8887777766655443 3467777777777765442 223222 345555555
Q ss_pred CCccccC-CcCCccCCC--CCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCC-
Q 009079 216 QNRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLS- 288 (544)
Q Consensus 216 ~~~~~~l-~~~~~~~~~--L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~- 288 (544)
+|.+..+ +..+..++. |+.|++++|.+..+ +..+..+++|+.|++++|.+.++....+. .+|+.+++++|...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 5555532 344444433 66677766666644 34566666666666666666654332221 22555555544222
Q ss_pred -----CCCc----cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhh---------------------cCCCCCc
Q 009079 289 -----GLPP----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS---------------------RLPENED 338 (544)
Q Consensus 289 -----~l~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 338 (544)
.+|. .+..+++|+++++++|.+..+....+.+... ++.+.. .+.....
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN--LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT--CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccC--CcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 1221 2444455555555555444433222211000 000000 0000000
Q ss_pred cccccchhhhhhhhhcccccceeeecCCCccC-CCc-hhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCC
Q 009079 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIP-SEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKI 415 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l 415 (544)
.... ............++++.+++++|.+. .++ ..+..+++|++|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus 389 ~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 389 TKNK--ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TTSC--CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCC--CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 0000 00000011122345666666666654 233 3444556666666666665553 33456666677777766665
Q ss_pred CC--CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCC--------CCCCCCccCceEeecCC
Q 009079 416 KD--WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN--------PPFSSLPHLQELYLRRM 485 (544)
Q Consensus 416 ~~--~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ls~n 485 (544)
+. ..+..|..+++|++|++++|+++.++...+.++++|++|++++|.++.+.. ..|+.+++|+.|++++|
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 42 234446777888888888888887777777888888888888887766532 23677788888888888
Q ss_pred cccccCcc-ccCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCccccccc
Q 009079 486 QLREAPTD-ILRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 486 ~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~ 537 (544)
.++.+|.. +..+++|+.|++++|+++.+|+. +..+++|+.|++++|.+....
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 88877754 56788888888888888877544 578888888888888877543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-47 Score=400.96 Aligned_cols=456 Identities=21% Similarity=0.235 Sum_probs=377.6
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCc-chh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA 86 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~ 86 (544)
+.+++||+++|.++.++...+.. +++|++|++++|.+..+ |.+|.++++|++|++++|.++.+ |.+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 67899999999999888766655 57799999999988866 45788999999999999988877 678
Q ss_pred hhCCCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCc--cCCcccccCcCCCEEEcCCCccccCC-ccccCCCCc
Q 009079 87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L 162 (544)
|.++++|++|++++|.++.++ ..+..+++|++|++++|.+. .+|..++++++|++|++++|.+..++ ..+..+.+|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 889999999999999888776 56888999999999999887 46788889999999999999887553 334444433
Q ss_pred ----eEEEecCCccccccchhhcCccccceEEcCCCcCC-----------------------------------------
Q 009079 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN----------------------------------------- 197 (544)
Q Consensus 163 ----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------------------------- 197 (544)
.+|++++|.++.++...+... +|++|++++|.+.
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 478888888877777666554 6777777776542
Q ss_pred -----------------CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEEC
Q 009079 198 -----------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 260 (544)
Q Consensus 198 -----------------~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l 260 (544)
+....+..+++|+.++++++.+..++ .+..+++|+.+++++|.+..+|. + .+++|++|++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l 335 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTL 335 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccccc-C-CCCccceeec
Confidence 11112556788999999999999887 88899999999999999999984 4 9999999999
Q ss_pred CCCcCcccchhcccccccEEEccCCCCCCC---CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCC
Q 009079 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337 (544)
Q Consensus 261 ~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (544)
++|............+|++|++++|.+... +..+..+++|++|++++|.+..++...
T Consensus 336 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------- 395 (606)
T 3vq2_A 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-------------------- 395 (606)
T ss_dssp ESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC--------------------
T ss_pred cCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc--------------------
Confidence 999544333333445699999999998875 677899999999999999987654211
Q ss_pred ccccccchhhhhhhhhcccccceeeecCCCccCCCch--hhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCC
Q 009079 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNK 414 (544)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~ 414 (544)
...+.++.+++++|.+..+++ .+..+++|+.|++++|.++. .|..+..+++|++|++++|.
T Consensus 396 ----------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 396 ----------------MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp ----------------TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred ----------------cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 113578999999999986654 67788999999999999987 66778999999999999999
Q ss_pred CCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc
Q 009079 415 IKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD 493 (544)
Q Consensus 415 l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~ 493 (544)
+++ ..+..+..+++|++|++++|++.+++...+..+++|+.|++++|+++...+..++.+++|+.|++++|.++.+|..
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 887 4556678999999999999999998888899999999999999999999999999999999999999999999998
Q ss_pred ccCCC-CCCeeecCCCCCCCCCcc
Q 009079 494 ILRLQ-QLRILDLSQNSLQSIPEV 516 (544)
Q Consensus 494 ~~~~~-~L~~L~l~~n~l~~l~~~ 516 (544)
+..++ +|+.|++++|++.+-++.
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred HhhhcccCcEEEccCCCcccCCcc
Confidence 88887 699999999999865443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-47 Score=395.62 Aligned_cols=459 Identities=20% Similarity=0.232 Sum_probs=379.5
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCc-chh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA 86 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~ 86 (544)
..+++||+++|.++.+++..+.. +++|++|++++|.+..+ |.+|.++++|++|++++|.+..+ |.+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSR------------LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTT------------CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CcCcEEEccCCccCcCChhHhcc------------CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 47899999999999887655554 67799999999988855 56888999999999999988865 568
Q ss_pred hhCCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccC-CccccCCCCce
Q 009079 87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMS 163 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~ 163 (544)
+.++++|++|++++|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+ +..+..+++|+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 88899999999999988877 456888899999999999888653 3444588899999999888865 44577788888
Q ss_pred --EEEecCCccccccchhhcC-------------------------------------------------cc--ccceEE
Q 009079 164 --KLDVEGNKLTVLSNNLIAS-------------------------------------------------WT--MLTELI 190 (544)
Q Consensus 164 --~L~l~~~~~~~~~~~~~~~-------------------------------------------------~~--~L~~L~ 190 (544)
.|++++|.++.+....+.. +. ++++++
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 7888888777655543332 11 678888
Q ss_pred cCCCcCCCCcc-cccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCc-c
Q 009079 191 ASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLK-E 267 (544)
Q Consensus 191 l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~-~ 267 (544)
+++|.+..++. .+..+++|++|++++|.++.+|..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+. .
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 88988887754 58999999999999999999999999999999999999999976 567899999999999999887 4
Q ss_pred cchhc--ccccccEEEccCCCCCCC---CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccc
Q 009079 268 YCVEA--CQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342 (544)
Q Consensus 268 ~~~~~--~~~~L~~L~l~~~~l~~l---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (544)
++... ...+|++|++++|.+... +..+..+++|++|++++|.+..+....+.
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------- 397 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK----------------------- 397 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-----------------------
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-----------------------
Confidence 44432 234599999999999885 56689999999999999988665432221
Q ss_pred cchhhhhhhhhcccccceeeecCCCccCCCc--hhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCC-
Q 009079 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDW- 418 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~--~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~- 418 (544)
..+.++.+++++|.+.... ..+..+++|++|++++|.++. .+..+..+++|++|++++|.+++.
T Consensus 398 ------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 398 ------------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp ------------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred ------------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 2357899999999988543 336778999999999999987 456689999999999999998762
Q ss_pred --CHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccC-cccc
Q 009079 419 --PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDIL 495 (544)
Q Consensus 419 --~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~ 495 (544)
....+..+++|++|++++|++.++....+..+++|+.|++++|+++...+..++.++.| .|++++|.++.++ ..+.
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence 23457899999999999999999887889999999999999999999999999999999 9999999999765 4467
Q ss_pred CCCCCCeeecCCCCCCCCCc
Q 009079 496 RLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 496 ~~~~L~~L~l~~n~l~~l~~ 515 (544)
.+++|+.|++++|++.+-.+
T Consensus 545 ~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp HHHTSSEEECTTCCEECSGG
T ss_pred cCCCCCEEeCCCCCccccCC
Confidence 79999999999999986443
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-47 Score=391.72 Aligned_cols=474 Identities=21% Similarity=0.265 Sum_probs=383.8
Q ss_pred cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcc-hhhh
Q 009079 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (544)
Q Consensus 11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~ 88 (544)
.++++|++.+++.+|..+. +++++|+++++.++.++ .+|.++++|++|++++|.++.++ .+|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence 4579999999999997553 46999999999999765 48999999999999999999775 5789
Q ss_pred CCCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCcccc--CCccccCCCCceE
Q 009079 89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK 164 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~ 164 (544)
++++|++|++++|.++.++ ..|..+++|++|++++|.++.++. .++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999998775 569999999999999999998875 68899999999999999885 6888999999999
Q ss_pred EEecCCccccccchhhcCcccc----ceEEcCCCcCCCCcccccCCCceeEEEccCCccc--cCCcC-------------
Q 009079 165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSS------------- 225 (544)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~l~~~------------- 225 (544)
|++++|.++.+....++.+++| .++++++|.+..++.......+|+.+++++|... .++..
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999998887778888888 8999999999876544333448999999886322 11111
Q ss_pred -----------------CccCC--CCCEEEccCC-cCC-cCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccC
Q 009079 226 -----------------ISGCC--SLAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284 (544)
Q Consensus 226 -----------------~~~~~--~L~~l~l~~~-~~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~ 284 (544)
+..+. .++.+++..+ .+. .++..+..+++|++|++++|.+..++.......|++|++++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 313 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEES
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeecc
Confidence 11111 1233444443 222 44666788899999999999888877665555789999999
Q ss_pred CCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (544)
Q Consensus 285 ~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (544)
|.+..+|. ..+++|+++++++|.+...... ...+.++++++
T Consensus 314 n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-------------------------------------~~~~~L~~L~l 354 (570)
T 2z63_A 314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDL 354 (570)
T ss_dssp CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-------------------------------------CBCTTCCEEEC
T ss_pred CcccccCc--ccccccCEEeCcCCcccccccc-------------------------------------ccCCCCCEEeC
Confidence 98887776 5778899999988875432110 12357888999
Q ss_pred CCCccCCC---chhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCH-HHHhCCCCCCEEECCCCCCC
Q 009079 365 EGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLR 440 (544)
Q Consensus 365 ~~~~~~~i---~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~i~ 440 (544)
++|.+... +..+..+++|++|++++|.++.++..+..+++|++|++++|.++...+ ..+..+++|++|++++|++.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 98888755 567778899999999999998877778899999999999998887643 45788999999999999998
Q ss_pred cCCCCccCCCCCcceEecCCcccC-CCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCC-ccc
Q 009079 441 QVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EVT 517 (544)
Q Consensus 441 ~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~-~~l 517 (544)
......+..+++|+.|++++|.++ ...+..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.++ +.+
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 877777889999999999999887 35567789999999999999999866 777888999999999999999774 568
Q ss_pred ccceeeeEeccCCcccccccc
Q 009079 518 YIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 518 ~~~~~L~~l~l~~n~~~~~~~ 538 (544)
..+++|+.|++++|++.+.+.
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred hcccCCcEEEecCCcccCCCc
Confidence 899999999999999988764
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-45 Score=392.71 Aligned_cols=490 Identities=22% Similarity=0.240 Sum_probs=349.4
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCC-CCCc-chhhh
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG 88 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~-~~~l-~~~~~ 88 (544)
+..|++++.++.+|. + .+++++|++++|.++.+ +..|.++++|++|++++|. +..+ |.+|.
T Consensus 7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence 478888888888886 3 24688888888888855 5678888888888888884 4455 56788
Q ss_pred CCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCcc-CCcc--cccCcCCCEEEcCCCccccCC--ccccCCCCc
Q 009079 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM 162 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L 162 (544)
++++|++|++++|.+..+ |..|..+++|++|++++|.++. ++.. ++++++|++|++++|.+..++ ..+.++++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 888888888888888865 6678888888888888888874 4443 778888888888888887553 467888888
Q ss_pred eEEEecCCccccccchhhcCc--cccceEEcCCCcCCC-CcccccCCCc------eeEEEccCCcccc-CCcC-------
Q 009079 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS------- 225 (544)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~~-l~~~------- 225 (544)
++|++++|.++.+....+..+ ++|+.|++++|.+.. .+..+..++. |+.|++++|.++. .+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 888888888877666666665 677888888777643 3344444433 7777777765431 1111
Q ss_pred -----------------------------Ccc--CCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhcc
Q 009079 226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC 273 (544)
Q Consensus 226 -----------------------------~~~--~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 273 (544)
+.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+....+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 111 25677777777777644 4556777777777777777776654433
Q ss_pred c--ccccEEEccCCCCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhh
Q 009079 274 Q--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (544)
Q Consensus 274 ~--~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
. .+|++|++++|.+..+ +..+..+++|+.|++++|.+..++...+.... .++.+....... .
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~Ls~N~l-------~------ 375 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLRDNAL-------T------ 375 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC--CCCEEEEETCCS-------C------
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC--CCCEEECCCCCC-------C------
Confidence 2 3477777777777764 45577777777777777777665543332110 000000000000 0
Q ss_pred hhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh--hhcCCCCcEEEccCCCCCCCCH-HHHhCCC
Q 009079 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPD-AILTSLS 427 (544)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~ 427 (544)
.....+.++.+++++|.+..+|.. ...++.+++++|.++.++.. +..+++|+.|++++|.++.+.. ..+..++
T Consensus 376 -~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 376 -TIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp -CCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred -cccCCCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence 000134677777777777766654 35678888888888776542 5588999999999999886543 2345678
Q ss_pred CCCEEECCCCCCCc-----CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCe
Q 009079 428 SLSCLKLDNNPLRQ-----VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502 (544)
Q Consensus 428 ~L~~L~l~~n~i~~-----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~ 502 (544)
+|+.|++++|.+.. .....+.++++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|..... ++|+.
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~ 530 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEI 530 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCE
T ss_pred ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccE
Confidence 99999999999873 3334578889999999999999999999999999999999999999988766554 89999
Q ss_pred eecCCCCCCCCCcccccceeeeEeccCCccccccccc
Q 009079 503 LDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQF 539 (544)
Q Consensus 503 L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~~~~ 539 (544)
|++++|+++.+++ ..+++|+.+++++|++.+++..
T Consensus 531 L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 531 LDISRNQLLAPNP--DVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EEEEEECCCCCCS--CCCSSCCEEEEEEECCCCSSSC
T ss_pred EECCCCcCCCCCh--hHhCCcCEEEecCCCccccccc
Confidence 9999999997643 2345889999999999987764
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.2e-45 Score=375.53 Aligned_cols=471 Identities=19% Similarity=0.231 Sum_probs=378.9
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCcc-hh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AA 86 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~ 86 (544)
......|++++.++.+|..++ +++++|++++|.++.+ +..+.++++|++|++++|.++.++ .+
T Consensus 5 ~~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp CTTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred CCCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 344568999999999997654 4699999999999976 468999999999999999999775 58
Q ss_pred hhCCCCccEEEccCCccccCCcc-ccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCc-cccCC-ccccCCCC
Q 009079 87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSK 161 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~ 161 (544)
|.++++|++|++++|.++.++.. +..+++|++|++++|.++. .+..++++++|++|++++|. +..++ ..+.++++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 99999999999999999988765 9999999999999999984 45678999999999999998 56665 57889999
Q ss_pred ceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc-cCCCceeEEEccCCccccCC----cCCccCCCCCEEE
Q 009079 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFY 236 (544)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~l~----~~~~~~~~L~~l~ 236 (544)
|++|++++|.++......+..+++|++|+++++.+..++..+ ..+++|++|++++|.++.++ .....+++|+.++
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 999999999999877777999999999999999988777654 56899999999999988652 2234578899999
Q ss_pred ccCCcCC-----cCchhhhCCCCCCEEECCCCcCcccchh--------cccccccEEEccCCCCCCC------CccccCC
Q 009079 237 MGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE--------ACQLRLSVLDLSNNSLSGL------PPEIGKM 297 (544)
Q Consensus 237 l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~~~~~~--------~~~~~L~~L~l~~~~l~~l------~~~l~~~ 297 (544)
++++.+. .++..+..+++|+.+++++|.+.++... .....++.+++.++.+... +..+...
T Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 9999877 2334456788999999999887654322 1223478888888766542 2223345
Q ss_pred CCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC-Cc---
Q 009079 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IP--- 373 (544)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-i~--- 373 (544)
++++.+++++|.+..++...+ ...+.++++++++|.+.. ++
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~-----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~ 354 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFS-----------------------------------QHLKSLEFLDLSENLMVEEYLKNS 354 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHH-----------------------------------HHCTTCCEEECCSSCCCHHHHHHH
T ss_pred ccceEEEeccCccccCCHHHH-----------------------------------hcCccccEEEccCCccccccccch
Confidence 678888888887755432111 123578888888888774 32
Q ss_pred hhhccCCCccEEEcCCCCCCCCC---hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCC
Q 009079 374 SEIWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (544)
Q Consensus 374 ~~~~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 450 (544)
..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|++..++... .
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~ 430 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---P 430 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---C
T ss_pred hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---c
Confidence 22556789999999999998865 3478899999999999999877643 577899999999999988776432 3
Q ss_pred CCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCC-cccccceeeeEeccC
Q 009079 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EVTYIFVMLQKKSIN 529 (544)
Q Consensus 451 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~l~l~ 529 (544)
++|+.|++++|+++... ..+++|+.|++++|.++.+|. ...+++|+.|++++|+++.++ +.+..+++|+.|+++
T Consensus 431 ~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 68999999999888763 578999999999999999987 467999999999999999774 558999999999999
Q ss_pred Ccccccccc
Q 009079 530 TELVDKNQQ 538 (544)
Q Consensus 530 ~n~~~~~~~ 538 (544)
+|++.+++.
T Consensus 506 ~N~~~~~~~ 514 (549)
T 2z81_A 506 TNPWDCSCP 514 (549)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCCCc
Confidence 999988764
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=374.61 Aligned_cols=464 Identities=21% Similarity=0.229 Sum_probs=382.5
Q ss_pred hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcc-h
Q 009079 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-A 85 (544)
Q Consensus 8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~ 85 (544)
.+.+++||+++|.++.+++..+.. +++|++|++++|.+..++ ..|.++++|++|++++|.++.++ .
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred cccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 357899999999999888665554 678999999999999775 57999999999999999999775 5
Q ss_pred hhhCCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCccccCC-ccccCCCC
Q 009079 86 AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK 161 (544)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 161 (544)
+|.++++|++|++++|.++.++. .+..+++|++|++++|.++. +|..++++++|++|++++|.+..++ ..+..+.+
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 89999999999999999998876 58999999999999999985 6888999999999999999998664 45667777
Q ss_pred c----eEEEecCCccccccchhhcCccccceEEcCCCcCC--CCcccccCCC----------------------------
Q 009079 162 M----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLS---------------------------- 207 (544)
Q Consensus 162 L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~---------------------------- 207 (544)
| +.+++++|.++.+....+... +|+++++++|... .++..+..++
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 7 899999999998888877765 7999999887432 1122222222
Q ss_pred ----ceeEEEccCC-ccc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEE
Q 009079 208 ----RLIRLDLHQN-RIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281 (544)
Q Consensus 208 ----~L~~L~l~~~-~~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~ 281 (544)
.++.++++++ .+. ..+..+..+++|+.++++++.+..+|..+..+ +|++|++++|.+..++.. ....|+.++
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~-~l~~L~~L~ 331 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL-KLKSLKRLT 331 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC-BCSSCCEEE
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc-cccccCEEe
Confidence 2445555544 333 45677888999999999999999999888888 999999999999987763 445699999
Q ss_pred ccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhccccccee
Q 009079 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361 (544)
Q Consensus 282 l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 361 (544)
+++|.+...... ..+++|++|++++|.+...... + ......+.++.
T Consensus 332 l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~------~---------------------------~~~~~~~~L~~ 377 (570)
T 2z63_A 332 FTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC------S---------------------------QSDFGTTSLKY 377 (570)
T ss_dssp EESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE------E---------------------------HHHHTCSCCCE
T ss_pred CcCCcccccccc-ccCCCCCEEeCcCCccCccccc------c---------------------------ccccccCccCE
Confidence 999988774433 7889999999999987643200 0 01112357999
Q ss_pred eecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh--hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCC
Q 009079 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (544)
Q Consensus 362 l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i 439 (544)
+++++|.+..++..+..+++|++|++++|.++..+. .+..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus 378 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 457 (570)
T 2z63_A 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457 (570)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred EECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC
Confidence 999999999888888889999999999999887543 588999999999999999988888889999999999999998
Q ss_pred Cc-CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCCCccc
Q 009079 440 RQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEVT 517 (544)
Q Consensus 440 ~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l~~~l 517 (544)
.+ .....+..+++|+.|++++|.++.+.+..++.+++|+.|++++|.++.++. .+..+++|+.|++++|++++-.+..
T Consensus 458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 73 333568999999999999999999999999999999999999999997754 5678999999999999999654333
Q ss_pred ccc
Q 009079 518 YIF 520 (544)
Q Consensus 518 ~~~ 520 (544)
+.+
T Consensus 538 ~~~ 540 (570)
T 2z63_A 538 DYL 540 (570)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-44 Score=367.56 Aligned_cols=456 Identities=19% Similarity=0.205 Sum_probs=323.8
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCc-chhhhC
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (544)
+++||+++.++.+|..++ +++++|++++|.+..++ ..+.++++|++|++++|.++.+ |.+|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence 578899998888886543 45889999999888665 5788889999999998888876 568888
Q ss_pred CCCccEEEccCCccccCCccccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCccccCCccccCCCCc--eEE
Q 009079 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (544)
Q Consensus 90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L 165 (544)
+++|++|++++|.++.+|.. .+++|++|++++|.++. +|..++.+++|++|++++|.+.. ..+..+++| ++|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence 88899999988888887766 78888888888888875 45677788888888888877764 245555666 777
Q ss_pred EecCCcc--ccccchhhcCcc-ccceEEcCCCcCCC-C-cccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079 166 DVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-M-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (544)
Q Consensus 166 ~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 240 (544)
++++|.+ .......+..+. ....+++++|.+.. + +..+..+++|+.+++++|.......
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---------------- 207 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS---------------- 207 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH----------------
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc----------------
Confidence 7777766 333322233332 12233444444321 1 1233445555555555443000000
Q ss_pred cCCcCchhhhCCCCCCEEECCCCcCcccc-----hhcccccccEEEccCCCCC-CCCccc-----cCCCCcceeccCCCC
Q 009079 241 ALSALPAELGKLSKLGTLDLHSNQLKEYC-----VEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLTGNP 309 (544)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~-----~~~~~~~L~~L~l~~~~l~-~l~~~l-----~~~~~L~~L~l~~~~ 309 (544)
.+.+....+..+++|+.|+++++.+.... ......+|++|++++|.+. .+|..+ ..++.|+.+++++|.
T Consensus 208 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 01111123455566666666655544211 1111224666777766666 356555 677777777777776
Q ss_pred CccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCC
Q 009079 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389 (544)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~ 389 (544)
+ .++... . ... .....++.++++++.+..++. ...+++|++|++++
T Consensus 288 ~-~~p~~~--------~----------------------~~~--~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 288 F-GFPQSY--------I----------------------YEI--FSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN 333 (520)
T ss_dssp C-CSCTHH--------H----------------------HHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred e-ecchhh--------h----------------------hcc--cccCceeEEEcCCCccccccc-hhhCCcccEEEeEC
Confidence 5 322100 0 000 001357777888777765442 14578999999999
Q ss_pred CCCCC-CChhhhcCCCCcEEEccCCCCCCCCH--HHHhCCCCCCEEECCCCCCCc-CCCCccCCCCCcceEecCCcccCC
Q 009079 390 NSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASL 465 (544)
Q Consensus 390 ~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~l~~ 465 (544)
|.+++ +|..+..+++|++|++++|.+++++. ..+..+++|++|++++|++.+ ++...+..+++|+.|++++|.++.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 99988 77889999999999999999998543 568999999999999999998 877778899999999999999876
Q ss_pred CCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCcccccccc
Q 009079 466 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 466 ~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
..+..+. ++|+.|++++|.++.+|..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.+++.
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 6555443 799999999999999999888999999999999999999876 8899999999999999998765
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-43 Score=365.65 Aligned_cols=405 Identities=19% Similarity=0.245 Sum_probs=278.4
Q ss_pred cCccEEecccCccc-chhHhhcCCCCCCEEEcCCCCCC-------------Ccchhh---------------------h-
Q 009079 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAAI---------------------G- 88 (544)
Q Consensus 45 ~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-------------~l~~~~---------------------~- 88 (544)
-+++.|+++++.+. .+|.++.++++|++|++++|.+. .+|... .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 37899999999998 78899999999999999998651 111110 0
Q ss_pred ------------------CCCCccEEEcc--CCccccCCccccccCCccEEEcCCCCCcc------------------CC
Q 009079 89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (544)
Q Consensus 89 ------------------~~~~L~~L~l~--~~~l~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~ 130 (544)
....++.+.+. .|.++.+|..++++++|++|++++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00111111111 34555677777777777777777777776 77
Q ss_pred cccc--cCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCCc-ccc--ccchhhcCc------cccceEEcCCCcCCC
Q 009079 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW------TMLTELIASKNLLNG 198 (544)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~------~~L~~L~l~~~~~~~ 198 (544)
..++ ++++|++|++++|.+. .+|..+.++++|++|++++|. ++. ++. .++.+ ++|++|++++|.++.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCc
Confidence 7776 7777777777777654 566677777777777777776 664 332 24443 777777777777777
Q ss_pred Ccc--cccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCC-CCEEECCCCcCcccchhccc
Q 009079 199 MPE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ 274 (544)
Q Consensus 199 ~~~--~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~i~~~~~~~~~ 274 (544)
+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++.....
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 776 7777777777777777777 666 677777777777777777777776777777 77777777777665543322
Q ss_pred c---cccEEEccCCCCCC-CCcccc-------CCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcccccc
Q 009079 275 L---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343 (544)
Q Consensus 275 ~---~L~~L~l~~~~l~~-l~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (544)
. +|++|++++|.+.+ .|..+. .+++
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~-------------------------------------------- 434 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN-------------------------------------------- 434 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC--------------------------------------------
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCC--------------------------------------------
Confidence 2 35666666665555 333333 3334
Q ss_pred chhhhhhhhhcccccceeeecCCCccCCCchhhcc-CCCccEEEcCCCCCCCCChhhhc--------CCCCcEEEccCCC
Q 009079 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNK 414 (544)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~-~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~ 414 (544)
++.+++++|.+..+|..++. +++|++|++++|.++.+|..... +++|+.|++++|.
T Consensus 435 ---------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 435 ---------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp ---------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred ---------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 44444445555555555443 67788888888888777654322 2378888888888
Q ss_pred CCCCCHHHH-hCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec------CCcccCCCCCCCCCCCccCceEeecCCcc
Q 009079 415 IKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL------SYNIASLPENPPFSSLPHLQELYLRRMQL 487 (544)
Q Consensus 415 l~~~~~~~l-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 487 (544)
++.++...+ ..+++|+.|++++|++..++. .+..+++|+.|++ ++|.+....+..++.+++|+.|++++|.+
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 887665532 378888888888888887654 4667888888888 45667777777888888888888888888
Q ss_pred cccCccccCCCCCCeeecCCCCCCCC
Q 009079 488 REAPTDILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 488 ~~i~~~~~~~~~L~~L~l~~n~l~~l 513 (544)
+.+|..+. ++|+.|++++|++.++
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CccCHhHh--CcCCEEECcCCCCccc
Confidence 88887655 7888888888887744
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.8e-42 Score=353.32 Aligned_cols=452 Identities=19% Similarity=0.215 Sum_probs=374.6
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcch-h
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A 86 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~ 86 (544)
+.+++||+++|.++.+++..+.. +++|++|++++|.+..++ .+|.++++|++|++++|.++.++. +
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRA------------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSS------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CCccEEECcCCccCccChhhhhc------------CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 57999999999999887554444 688999999999999765 689999999999999999998866 5
Q ss_pred hhCCCCccEEEccCCcccc--CCccccccCCccEEEcCCCC-CccCC-cccccCcCCCEEEcCCCcccc-CCccccCCCC
Q 009079 87 IGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQ-LKELP-SSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~ 161 (544)
+.++++|++|++++|.++. .+..+..+++|++|++++|. +..++ ..++.+++|++|++++|.+.. .+..+..+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 9999999999999999985 46779999999999999998 66676 478899999999999999984 6778999999
Q ss_pred ceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc----ccccCCCceeEEEccCCccc-----cCCcCCccCCCC
Q 009079 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL 232 (544)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L 232 (544)
|++|+++++.+..++...+..+++|++|++++|.+.+++ .....+++|+.|+++++.++ .++..+..+++|
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 999999999988877776778999999999999997652 22345788999999999877 234455778899
Q ss_pred CEEEccCCcCCcCc-------hhhhCCCCCCEEECCCCcCcccchh-------cccccccEEEccCCCCCCCCccc-cCC
Q 009079 233 AEFYMGNNALSALP-------AELGKLSKLGTLDLHSNQLKEYCVE-------ACQLRLSVLDLSNNSLSGLPPEI-GKM 297 (544)
Q Consensus 233 ~~l~l~~~~~~~l~-------~~l~~~~~L~~L~l~~~~i~~~~~~-------~~~~~L~~L~l~~~~l~~l~~~l-~~~ 297 (544)
+.+++++|.+..++ ..+..+++++.+.+.++.+...... ....+++.+++++|.+..+|..+ ..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 99999999776442 2356788999999999887654321 12245999999999999998876 579
Q ss_pred CCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCch---
Q 009079 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS--- 374 (544)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~--- 374 (544)
++|++|++++|.+...... ........+.++.+++++|.+..++.
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~--------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLK--------------------------------NSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp TTCCEEECCSSCCCHHHHH--------------------------------HHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred ccccEEEccCCcccccccc--------------------------------chhhhhccccCcEEEccCCcccccccchh
Confidence 9999999999987542100 00011223579999999999987763
Q ss_pred hhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (544)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 454 (544)
.+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++... .++|++|++++|+++++. ..+++|+
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp HGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred hhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh---cCCceEEECCCCChhhhc----ccCChhc
Confidence 477789999999999999999998999999999999999998876432 379999999999998864 4789999
Q ss_pred eEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCC
Q 009079 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l 513 (544)
+|++++|+++.+.. ...+++|+.|++++|.++.++. .+..+++|+.|++++|++.+-
T Consensus 455 ~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 455 ELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp EEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred EEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 99999999997654 5678999999999999997754 477899999999999999854
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-41 Score=358.27 Aligned_cols=480 Identities=20% Similarity=0.233 Sum_probs=357.2
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcch-hhhC
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~ 89 (544)
.+.||++.+++.+|+.+. +++++|++++|.|+.++. +|.++++|++|++++|+++.++. +|.+
T Consensus 34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence 578999999999997664 359999999999998874 89999999999999999998865 7999
Q ss_pred CCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCcccc--CCccccCCCCceEE
Q 009079 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (544)
Q Consensus 90 ~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L 165 (544)
+++|++|++++|.++.+|. .|.++++|++|++++|+++.++. .++++++|++|++++|.+.. ++..+..+++|++|
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999999999998875 58999999999999999998875 58999999999999999874 56778889999999
Q ss_pred EecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccc--cCC----------------
Q 009079 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIP---------------- 223 (544)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~l~---------------- 223 (544)
++++|.++.+....+..+..++ .++++.+.+..++........+..+++.++... ..+
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 9999999988777676665543 577788877666544444445555665554322 000
Q ss_pred --------------cCCccCCCCCEEEccCCcCC----cCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079 224 --------------SSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (544)
Q Consensus 224 --------------~~~~~~~~L~~l~l~~~~~~----~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~ 285 (544)
..+.....+....+..+... .+...+....+++.+.+.++.+..+........++.+++.+|
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence 01111122222222211111 122223344455555555555544444433344555555555
Q ss_pred CCCCCCc--------------------cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccch
Q 009079 286 SLSGLPP--------------------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (544)
Q Consensus 286 ~l~~l~~--------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (544)
.+..++. ....+++|+.+++++|.+.....
T Consensus 339 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~------------------------------ 388 (635)
T 4g8a_A 339 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC------------------------------ 388 (635)
T ss_dssp EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE------------------------------
T ss_pred cccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc------------------------------
Confidence 4443221 12345555555555555432110
Q ss_pred hhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC--ChhhhcCCCCcEEEccCCCCCCCCHHHH
Q 009079 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL--PPELSSCASLQTLILSRNKIKDWPDAIL 423 (544)
Q Consensus 346 ~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~~~~L~~L~l~~~~l~~~~~~~l 423 (544)
..........++.+++..+....++..+..+++++.+++..+..... +..+..+++++.++++.|.+.......+
T Consensus 389 ---~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 389 ---CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp ---CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ---cccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 00111223567888888888887777788889999999999876553 2347889999999999999998888888
Q ss_pred hCCCCCCEEECCCCCCC-cCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCC
Q 009079 424 TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLR 501 (544)
Q Consensus 424 ~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~ 501 (544)
..+++|+.|++++|.+. .+....+..+++|+.|++++|+++.+.+.+|+.+++|+.|+|++|+++.++. .+..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 99999999999999854 4556679999999999999999999999999999999999999999998754 567899999
Q ss_pred eeecCCCCCCCC-Ccccccc-eeeeEeccCCccccccccc
Q 009079 502 ILDLSQNSLQSI-PEVTYIF-VMLQKKSINTELVDKNQQF 539 (544)
Q Consensus 502 ~L~l~~n~l~~l-~~~l~~~-~~L~~l~l~~n~~~~~~~~ 539 (544)
.|++++|+++.+ |+.+..+ ++|+.|++++|++.++|+.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999976 6667777 6899999999999999874
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.1e-42 Score=363.87 Aligned_cols=433 Identities=18% Similarity=0.230 Sum_probs=271.8
Q ss_pred cCccEEecccCccc-chhHhhcCCCCCCEEEc-CCCCCCCc-ch------------------------------------
Q 009079 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-PA------------------------------------ 85 (544)
Q Consensus 45 ~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l-~~~~~~~l-~~------------------------------------ 85 (544)
.+++.|+|+++.+. .+|..++++++|++|++ ++|.+... +-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888999999887 78889999999999999 66643211 00
Q ss_pred ----hh-----------hCCCCccEEEccC--CccccCCccccccCCccEEEcCCCCCcc------------------CC
Q 009079 86 ----AI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (544)
Q Consensus 86 ----~~-----------~~~~~L~~L~l~~--~~l~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~ 130 (544)
.+ .....++.+.+.. |.++.+|..+..+++|+.|++++|.++. +|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 00 0111122222222 4444566666667777777777776665 66
Q ss_pred cccc--cCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCCc-ccc--ccchhhcCc-------cccceEEcCCCcCC
Q 009079 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW-------TMLTELIASKNLLN 197 (544)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~-------~~L~~L~l~~~~~~ 197 (544)
..++ ++++|++|++++|.+. .+|..+.++++|+.|++++|. ++. ++.. +..+ ++|++|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC
Confidence 6655 6666666666666543 556666666666666666665 553 2221 2322 36666666666666
Q ss_pred CCcc--cccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCC-CCEEECCCCcCcccchhccc
Q 009079 198 GMPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ 274 (544)
Q Consensus 198 ~~~~--~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~i~~~~~~~~~ 274 (544)
.+|. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.+..++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp----- 635 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP----- 635 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-----
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-----
Confidence 6665 5666666666666666666555 556666666666666666666655666665 666666666655444
Q ss_pred ccccEEEccCCCCCCCCccccCCC--CcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009079 275 LRLSVLDLSNNSLSGLPPEIGKMT--TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (544)
Q Consensus 275 ~~L~~L~l~~~~l~~l~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (544)
..+...+ +|+.|++++|.+.......... ..
T Consensus 636 -----------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~------------------------------l~ 668 (876)
T 4ecn_A 636 -----------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCS------------------------------MD 668 (876)
T ss_dssp -----------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSC------------------------------TT
T ss_pred -----------------hhhhccccCCCCEEECcCCcCCCccccchhh------------------------------hc
Confidence 3333222 2445555554443211000000 00
Q ss_pred hcccccceeeecCCCccCCCchhhc-cCCCccEEEcCCCCCCCCChhhhc--------CCCCcEEEccCCCCCCCCHHHH
Q 009079 353 TRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKIKDWPDAIL 423 (544)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~l~~~~~~~l 423 (544)
....+.++.+++++|.+..+|..++ .+++|+.|++++|.++.+|..+.. +++|+.|++++|.++.++...+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence 0011245666666666666776665 567888888888888877765432 3388888888888887765532
Q ss_pred -hCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC------cccCCCCCCCCCCCccCceEeecCCcccccCccccC
Q 009079 424 -TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY------NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR 496 (544)
Q Consensus 424 -~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~ 496 (544)
..+++|+.|++++|++..++. .+..+++|+.|++++ |.+....+..+..+++|+.|+|++|.++.+|..+.
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~- 826 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT- 826 (876)
T ss_dssp TTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred hccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc-
Confidence 378888888888888888654 366788888888866 67777778888888899999999998888887755
Q ss_pred CCCCCeeecCCCCCCCC-CcccccceeeeEeccCCcccc
Q 009079 497 LQQLRILDLSQNSLQSI-PEVTYIFVMLQKKSINTELVD 534 (544)
Q Consensus 497 ~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~ 534 (544)
++|+.|++++|++..+ +..+.....+..+.+.+|...
T Consensus 827 -~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 827 -PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp -SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred -CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 6889999999988865 333333334455555555443
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-41 Score=360.56 Aligned_cols=467 Identities=20% Similarity=0.227 Sum_probs=341.5
Q ss_pred cEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCc-chhhhCCCCccEEEccCCc-cccC-CccccccCCccEEEcCCC
Q 009079 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSN 124 (544)
Q Consensus 48 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~-l~~l-~~~~~~~~~L~~L~l~~~ 124 (544)
+..+.+++.++.+|. ..+++++|++++|.++.+ +.+|.++++|++|++++|. +..+ |..|..+++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467889999999987 458999999999999976 5689999999999999994 4466 677999999999999999
Q ss_pred CCccC-CcccccCcCCCEEEcCCCcccc-CCcc--ccCCCCceEEEecCCccccccc-hhhcCccccceEEcCCCcCCCC
Q 009079 125 QLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGM 199 (544)
Q Consensus 125 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 199 (544)
.+..+ |..++.+++|++|++++|.+.. ++.. +..+++|++|++++|.++.+.. ..++++++|++|++++|.+..+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99966 6789999999999999999985 4444 8899999999999999987654 4689999999999999998654
Q ss_pred -cccccCC--CceeEEEccCCcccc-CCcCCccCCC------CCEEEccCCcCC-cCchhhh------------------
Q 009079 200 -PETIGSL--SRLIRLDLHQNRILS-IPSSISGCCS------LAEFYMGNNALS-ALPAELG------------------ 250 (544)
Q Consensus 200 -~~~l~~~--~~L~~L~l~~~~~~~-l~~~~~~~~~------L~~l~l~~~~~~-~l~~~l~------------------ 250 (544)
+..+..+ ++|+.|++++|.+.. .+..+..+++ |+.|++++|.+. ..+..+.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 5666666 789999999998874 4555555554 999999999765 2222211
Q ss_pred ------------------C--CCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCCCC-CccccCCCCcceeccCC
Q 009079 251 ------------------K--LSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTG 307 (544)
Q Consensus 251 ------------------~--~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~ 307 (544)
+ .++|+.|++++|.+..+....+. ..|+.|++++|.+..+ +..+..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 1 26788888888888776554333 3488888888888874 45678888888888888
Q ss_pred CCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEc
Q 009079 308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387 (544)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l 387 (544)
|.+..+....+.+... ++.+....... ...........++++.+++++|.+..++. +++|+.+++
T Consensus 324 N~l~~~~~~~~~~l~~--L~~L~L~~N~i---------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l 388 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPK--VAYIDLQKNHI---------AIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFL 388 (844)
T ss_dssp CCCSCCCSCSCSSCTT--CCEEECCSCCC---------CCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEE
T ss_pred CCCCccCHHHhcCCCC--CCEEECCCCCC---------CccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhcc
Confidence 8876654433322100 00000000000 00000011122344555555555444333 444555555
Q ss_pred CCCCCCCCChhhhcCCCCcEEEccCCCCCCCC-HHHHhCCCCCCEEECCCCCCCcCCC-CccCCCCCcceEecCCcccCC
Q 009079 388 SRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASL 465 (544)
Q Consensus 388 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~ 465 (544)
++|.++.+|.. ..+++.+++++|.++.+. ...+..+++|+.|++++|++...+. ..+..+++|+.|++++|.++.
T Consensus 389 ~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 389 SGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp ESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred CCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 55555544432 345677777777777654 3345689999999999999987543 245678999999999998873
Q ss_pred -----CCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcccccc
Q 009079 466 -----PENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKN 536 (544)
Q Consensus 466 -----~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~ 536 (544)
..+..|..+++|+.|+|++|.++.++.. +..+++|+.|++++|+++.+|+.... ++|+.|++++|.+.+.
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAP 541 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCC
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCC
Confidence 3446688999999999999999977554 67899999999999999988654333 8999999999999864
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=348.56 Aligned_cols=426 Identities=22% Similarity=0.199 Sum_probs=338.7
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCcchhh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~ 87 (544)
+.+++||+++|.+..+++..+.. +++|++|++++|.+..+ |..|.++++|++|++++|.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence 68999999999999998776665 57799999999999976 67999999999999999999999877
Q ss_pred hCCCCccEEEccCCcccc--CCccccccCCccEEEcCCCCCccCCcccccCcCC--CEEEcCCCcc--c-cCCccccCCC
Q 009079 88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS 160 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~~~~~~~~~~ 160 (544)
.+++|++|++++|.++. +|..++.+++|++|++++|.++. ..+..+++| ++|++++|.+ . ..|..+..+.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999986 57889999999999999999876 357778888 9999999988 3 4455555554
Q ss_pred -CceEEEecCCccc-cccchhhcCccccceEEcCCCc-------CCCCcccccCCCceeEEEccCCcccc-----CCcCC
Q 009079 161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI 226 (544)
Q Consensus 161 -~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----l~~~~ 226 (544)
+...++++++.+. .+....+..+++|+.+++++|. +.+....+..+++|+.|+++++.+.. ++..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~- 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL- 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH-
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH-
Confidence 2335666777655 4555668889999999999986 32222367888999999999887662 1111
Q ss_pred ccCCCCCEEEccCCcCC-cCchhh-----hCCCCCCEEECCCCcCcccchhccc-----ccccEEEccCCCCCCCCcccc
Q 009079 227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSGLPPEIG 295 (544)
Q Consensus 227 ~~~~~L~~l~l~~~~~~-~l~~~l-----~~~~~L~~L~l~~~~i~~~~~~~~~-----~~L~~L~l~~~~l~~l~~~l~ 295 (544)
...++|+.+++++|.+. .+|..+ ..+++|+.+++++|.+ .++..... .+++.|++++|.+...+. ..
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 321 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS 321 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence 12468999999999888 778777 7888999999988888 55522111 348888888887766431 25
Q ss_pred CCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchh
Q 009079 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375 (544)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~ 375 (544)
.+++|++|++++|.+.. .+|..
T Consensus 322 ~l~~L~~L~Ls~n~l~~----------------------------------------------------------~~~~~ 343 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTD----------------------------------------------------------TVFEN 343 (520)
T ss_dssp SCCCCCEEECCSSCCCT----------------------------------------------------------TTTTT
T ss_pred hCCcccEEEeECCccCh----------------------------------------------------------hhhhh
Confidence 67777777777776642 23445
Q ss_pred hccCCCccEEEcCCCCCCC---CChhhhcCCCCcEEEccCCCCCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079 376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (544)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 451 (544)
+..+++|++|++++|.++. +|..+..+++|++|++++|.++. ++...+..+++|++|++++|++++.....+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 5667899999999999986 44568899999999999999988 6666678889999999999999764333232 7
Q ss_pred CcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC
Q 009079 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP 514 (544)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~ 514 (544)
+|+.|++++|+++.+.. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++++-.
T Consensus 422 ~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCEEECCCCcccccch-hhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 99999999999986544 455899999999999999999887 778999999999999998543
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-41 Score=348.35 Aligned_cols=449 Identities=20% Similarity=0.227 Sum_probs=300.4
Q ss_pred ccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcc-hhhhCCCCccEEEccCCccccC-CccccccCCccEEEcCCC
Q 009079 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (544)
Q Consensus 47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~ 124 (544)
.++++++++.++.+|..+. ++|++|++++|.++.++ .+|.++++|++|++++|.++.+ |..|..+++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3556666666665554443 55666666666665554 3555666666666666665544 344556666666666666
Q ss_pred CCccCCcccccCcCCCEEEcCCCccccCC--ccccCCCCceEEEecCCccccccchhhcCcccc--ceEEcCCCcC--CC
Q 009079 125 QLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--NG 198 (544)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~ 198 (544)
.++.+|.. .+++|++|++++|.+..++ ..+.++++|++|++++|.++... +..++.| ++|++++|.+ ..
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccc
Confidence 66655544 5566666666666655433 45566666666666666555422 3333444 6666666655 22
Q ss_pred -CcccccCCC-ceeEEEccCCcccc-CC-cCCccCCCCCEEEccCCcCC-----cCchhhhCCCCCCEEECCCCcCcc--
Q 009079 199 -MPETIGSLS-RLIRLDLHQNRILS-IP-SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE-- 267 (544)
Q Consensus 199 -~~~~l~~~~-~L~~L~l~~~~~~~-l~-~~~~~~~~L~~l~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~~-- 267 (544)
.|..+..++ ..-.+++++|.+.. ++ ..+..+++|+.+++++|... .....+...++|+.+++.++.+..
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 233444332 11234555555442 11 12345566777777766422 223346677777777777665543
Q ss_pred ---cchhcccccccEEEccCCCCCC-CCccc-----cCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCc
Q 009079 268 ---YCVEACQLRLSVLDLSNNSLSG-LPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338 (544)
Q Consensus 268 ---~~~~~~~~~L~~L~l~~~~l~~-l~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (544)
++......+|++|++++|.+.+ +|..+ ..++.|+.+++..+.+ .++.. ..
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~--------~~------------ 324 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE--------AL------------ 324 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH--------HH------------
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh--------hh------------
Confidence 2222333468888888888774 66655 4555555555555443 21100 00
Q ss_pred cccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCC
Q 009079 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKD 417 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~ 417 (544)
... .....++.++++++.+...+. ...+++|++|++++|.+++ +|..+..+++|++|++++|.++.
T Consensus 325 ----------~~~--~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 325 ----------YSV--FAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp ----------HHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ----------hhh--hccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 000 011368889999888765542 1457899999999999988 77789999999999999999998
Q ss_pred CCH--HHHhCCCCCCEEECCCCCCCc-CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccc
Q 009079 418 WPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494 (544)
Q Consensus 418 ~~~--~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~ 494 (544)
++. ..+..+++|++|++++|++.. ++...+..+++|+.|++++|.++...+..+. ++|+.|++++|.++.+|..+
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~ 469 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV 469 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh
Confidence 764 457899999999999999998 8877789999999999999998765544433 79999999999999999988
Q ss_pred cCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCcccccccc
Q 009079 495 LRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 495 ~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
..+++|+.|++++|+++.+|+. +..+++|+.|++++|++.+++.
T Consensus 470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 8999999999999999999876 8999999999999999998764
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-41 Score=351.88 Aligned_cols=413 Identities=19% Similarity=0.265 Sum_probs=294.0
Q ss_pred hhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCccc-------------chh-------------
Q 009079 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------------KLK------------- 61 (544)
Q Consensus 9 ~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-------------~~~------------- 61 (544)
..++.|+|+++.+. .+|+.+.. +++|++|++++|.+. .+|
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-------------L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~ 147 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-------------LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-------------CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHH
T ss_pred CCEEEEEecCcccCCcCChHHhc-------------CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHH
Confidence 46889999999987 66654443 688999999999651 000
Q ss_pred --------Hhhc-------------------CCCCCCEEEcC--CCCCCCcchhhhCCCCccEEEccCCcccc-------
Q 009079 62 --------EDLR-------------------NLPLLTVLNVS--HNKLSELPAAIGELHMLKSLDVSFNSIMK------- 105 (544)
Q Consensus 62 --------~~~~-------------------~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~l~~------- 105 (544)
..+. ....++.+.+. +|.++.+|..+.++++|++|++++|.++.
T Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp HHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc
Confidence 0000 11122222222 35566788889999999999999998887
Q ss_pred -----------CCcccc--ccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCc-ccc--CCccccCC------CCc
Q 009079 106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC------SKM 162 (544)
Q Consensus 106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~------~~L 162 (544)
+|..+. .+++|++|++++|.+. .+|..++++++|++|++++|. +.. +|..++.+ ++|
T Consensus 228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 888888 8999999999998865 778888899999999999997 774 77766665 889
Q ss_pred eEEEecCCccccccc-hhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccccCCcCCccCCC-CCEEEccC
Q 009079 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN 239 (544)
Q Consensus 163 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~-L~~l~l~~ 239 (544)
++|++++|.++.++. ..++.+++|++|++++|.+. .+| .+..+++|+.|++++|.++.+|..+..+++ |+.|++++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 999999998887765 35888899999999999987 788 888888999999999999888888888988 99999999
Q ss_pred CcCCcCchhhhCCC--CCCEEECCCCcCcccchhccc---------ccccEEEccCCCCCCCCcc-ccCCCCcceeccCC
Q 009079 240 NALSALPAELGKLS--KLGTLDLHSNQLKEYCVEACQ---------LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTG 307 (544)
Q Consensus 240 ~~~~~l~~~l~~~~--~L~~L~l~~~~i~~~~~~~~~---------~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~ 307 (544)
|.+..+|..+...+ +|+.|++++|.+.+..+..+. .+|++|++++|.+..+|.. +..+++|++|++++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 99988887776654 899999999988765433222 3599999999999988776 45689999999999
Q ss_pred CCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEc
Q 009079 308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387 (544)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l 387 (544)
|.+..++...+.+.. ..+..+++|+.|++
T Consensus 467 N~l~~i~~~~~~~~~---------------------------------------------------~~~~~l~~L~~L~L 495 (636)
T 4eco_A 467 NMLTEIPKNSLKDEN---------------------------------------------------ENFKNTYLLTSIDL 495 (636)
T ss_dssp SCCSBCCSSSSEETT---------------------------------------------------EECTTGGGCCEEEC
T ss_pred CCCCCcCHHHhcccc---------------------------------------------------ccccccCCccEEEC
Confidence 998766543322100 00111235666666
Q ss_pred CCCCCCCCChhhh--cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEEC------CCCCCCcCCCCccCCCCCcceEecC
Q 009079 388 SRNSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL------DNNPLRQVPSDGFKDIPMLQILDLS 459 (544)
Q Consensus 388 ~~~~l~~l~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l------~~n~i~~~~~~~l~~~~~L~~L~l~ 459 (544)
++|.++.+|..+. .+++|++|++++|.++.++. .+..+++|++|++ ++|++....+..+..+++|+.|+++
T Consensus 496 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred cCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 6666666655554 56666666666666655432 2445666666666 3444444444456667777777777
Q ss_pred CcccCCCCCCCCCCCccCceEeecCCccccc
Q 009079 460 YNIASLPENPPFSSLPHLQELYLRRMQLREA 490 (544)
Q Consensus 460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i 490 (544)
+|.+..+... +. ++|+.|++++|.+..+
T Consensus 575 ~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 575 SNDIRKVNEK-IT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCCBCCSC-CC--TTCCEEECCSCTTCEE
T ss_pred CCcCCccCHh-Hh--CcCCEEECcCCCCccc
Confidence 7766544332 32 6777777777766543
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.2e-41 Score=354.86 Aligned_cols=435 Identities=17% Similarity=0.223 Sum_probs=312.0
Q ss_pred hhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEec-ccCcccch-h------------------------
Q 009079 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLIL-AHNNIEKL-K------------------------ 61 (544)
Q Consensus 9 ~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~l~~~-~------------------------ 61 (544)
..++.|+|+++.+. .+|+.+.. +++|++|++ ++|.+... +
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-------------L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~ 389 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-------------LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-------------CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred CCEEEEECccCCCCCcCchHHhc-------------cccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence 46899999999988 67755543 688999999 66654311 0
Q ss_pred ----------------Hhh-----------cCCCCCCEEEcCC--CCCCCcchhhhCCCCccEEEccCCcccc-------
Q 009079 62 ----------------EDL-----------RNLPLLTVLNVSH--NKLSELPAAIGELHMLKSLDVSFNSIMK------- 105 (544)
Q Consensus 62 ----------------~~~-----------~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~l~~~~l~~------- 105 (544)
..+ .....++.+.+.. |.++.+|..+.++++|++|++++|.++.
T Consensus 390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~ 469 (876)
T 4ecn_A 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW 469 (876)
T ss_dssp HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccc
Confidence 001 1112233333332 5556689999999999999999999998
Q ss_pred -----------CCcccc--ccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCc-ccc--CCcccc-------CCCC
Q 009079 106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLA-------DCSK 161 (544)
Q Consensus 106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~-------~~~~ 161 (544)
+|..++ .+++|++|++++|.+. .+|..++++++|+.|++++|. +.. +|..+. .+++
T Consensus 470 ~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence 898877 9999999999999865 888889999999999999997 764 665444 4459
Q ss_pred ceEEEecCCccccccc-hhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCC-CCEEEccC
Q 009079 162 MSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN 239 (544)
Q Consensus 162 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~-L~~l~l~~ 239 (544)
|++|++++|.++.++. ..+..+++|++|++++|.+..+| .+..+++|+.|++++|.++.+|..+..+++ |+.|++++
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 9999999999997776 35899999999999999999888 899999999999999999999989999999 99999999
Q ss_pred CcCCcCchhhhCCCC--CCEEECCCCcCcccchhc-------ccccccEEEccCCCCCCCCccc-cCCCCcceeccCCCC
Q 009079 240 NALSALPAELGKLSK--LGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309 (544)
Q Consensus 240 ~~~~~l~~~l~~~~~--L~~L~l~~~~i~~~~~~~-------~~~~L~~L~l~~~~l~~l~~~l-~~~~~L~~L~l~~~~ 309 (544)
|.+..+|..+...+. |+.|++++|.+.+..... ...+|+.|++++|.+..+|..+ ..+++|+.|++++|.
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 999999887776654 999999999987543221 1235999999999999988875 488999999999999
Q ss_pred CccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCC
Q 009079 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389 (544)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~ 389 (544)
+..++...+.+.. .....+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~---------------------------------------------------~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 709 MTSIPENSLKPKD---------------------------------------------------GNYKNTYLLTTIDLRF 737 (876)
T ss_dssp CSCCCTTSSSCTT---------------------------------------------------SCCTTGGGCCEEECCS
T ss_pred CCccChHHhcccc---------------------------------------------------ccccccCCccEEECCC
Confidence 8766544332210 0011123556666666
Q ss_pred CCCCCCChhhh--cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC------CCCCcCCCCccCCCCCcceEecCCc
Q 009079 390 NSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN------NPLRQVPSDGFKDIPMLQILDLSYN 461 (544)
Q Consensus 390 ~~l~~l~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~------n~i~~~~~~~l~~~~~L~~L~l~~n 461 (544)
|.++.+|..+. .+++|+.|++++|.++.++.. +..+++|+.|++++ |++....+..+..+++|+.|++++|
T Consensus 738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCCccchHHhhhccCCCcCEEEeCCCCCCccchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 66665555554 556666666666666554322 44556666666644 5555444445666777777777777
Q ss_pred ccCCCCCCCCCCCccCceEeecCCcccccC-ccccCCCCCCeeecCCCCCCC
Q 009079 462 IASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQS 512 (544)
Q Consensus 462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~ 512 (544)
.+..+... +. ++|+.|+|++|.+..+. ..+.....+..+.+.+++...
T Consensus 817 ~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 817 DIRKVDEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCCBCCSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCccCHh-hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 77444332 32 57777777777766442 223333345555555555543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-39 Score=333.48 Aligned_cols=443 Identities=20% Similarity=0.195 Sum_probs=341.7
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCc-chhh
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI 87 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~ 87 (544)
..+++|++++.++.+|..++ +++++|++++|.+..++ ..|.++++|++|++++|.++.+ |++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 96 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred CCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence 34799999999999997654 46999999999999776 5899999999999999999977 6689
Q ss_pred hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCC--cccccCcCCCEEEcCCCccccCCccccCCCCc--e
Q 009079 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--S 163 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~ 163 (544)
.++++|++|++++|.++.+|.. .+++|++|++++|.++.++ ..++++++|++|++++|.+... .+..+++| +
T Consensus 97 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~ 172 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLS 172 (562)
T ss_dssp TTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEE
T ss_pred CCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceee
Confidence 9999999999999999999877 8999999999999999765 6899999999999999998753 44555666 9
Q ss_pred EEEecCCcc--ccccchhhcCcc-ccceEEcCCCcCCC-C-cccccCCCceeEEEccCCccc-----cCCcCCccCCCCC
Q 009079 164 KLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-M-PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLA 233 (544)
Q Consensus 164 ~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~ 233 (544)
+|++++|.+ +......+..+. ..-.+++++|.+.. + ...+..+++|+.+++++|... .....+...+.++
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999999988 655544455543 12255777777643 2 245677889999999987521 2223456677788
Q ss_pred EEEccCCcCC-----cCchhhhCCCCCCEEECCCCcCc-ccchhccc---cc---ccEEEccCCCCCCCCc-ccc---CC
Q 009079 234 EFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LR---LSVLDLSNNSLSGLPP-EIG---KM 297 (544)
Q Consensus 234 ~l~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~---~~---L~~L~l~~~~l~~l~~-~l~---~~ 297 (544)
.+++.++.+. .++..+ ..++|+.|++++|.+. .++...+. .. |+.+++..+.+ .+|. .+. ..
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~ 330 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHT
T ss_pred EEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhcc
Confidence 8887776655 233322 3458888999888877 45544321 23 44444444444 3442 121 23
Q ss_pred CCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC-Cchhh
Q 009079 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSEI 376 (544)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-i~~~~ 376 (544)
.+++++++++|.+..... ....+.++++++++|.+.. +|..+
T Consensus 331 ~~L~~L~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC-------------------------------------PPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp CCCSEEEEESSCCCCCCC-------------------------------------CSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred CcceEEEccCCCcccccC-------------------------------------ccCCCCceEEECCCCccccchhhhh
Confidence 578888888887643320 0123578888998888885 67778
Q ss_pred ccCCCccEEEcCCCCCCCCC---hhhhcCCCCcEEEccCCCCCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCC
Q 009079 377 WEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452 (544)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 452 (544)
..+++|++|++++|.++.++ ..+..+++|++|++++|.++. ++...+..+++|++|++++|++++.....+. ++
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 88999999999999999865 457899999999999999998 7776788899999999999999764332222 79
Q ss_pred cceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCC
Q 009079 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 453 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l 513 (544)
|+.|++++|+++.+....+ .+++|+.|++++|.++.+|.. +..+++|+.|++++|++.+-
T Consensus 452 L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 452 VKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 9999999999997766555 899999999999999999887 77899999999999999854
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.7e-39 Score=318.57 Aligned_cols=407 Identities=26% Similarity=0.300 Sum_probs=231.1
Q ss_pred ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCC-CcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcC
Q 009079 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 122 (544)
.+.|++|+++++.++.+|.+++++++|++|++++|.+. .+|..+.++++|+.+++.+|. ..++++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQAHELELN 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHTCSEEECT
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccCCCEEEec
Confidence 46788888888888888888888888888888887766 667777777666444433331 1345666666
Q ss_pred CCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccc
Q 009079 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (544)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (544)
+|.++.+|.. .++|++|++++|.+..+|.. .++|++|++++|.++.++.. .++|++|++++|.++++| .
T Consensus 80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~ 148 (454)
T 1jl5_A 80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E 148 (454)
T ss_dssp TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence 6666655542 25666666666666665532 25666666666666654321 156777777777776666 4
Q ss_pred ccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEc
Q 009079 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (544)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l 282 (544)
+..+++|++|++++|.++.+|... ++|++|++++|.+..+| .+..+++|+.|++++|.+++++... .+|++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEEC
Confidence 677777777777777777665433 46777777777777766 4677777777777777777655432 35777888
Q ss_pred cCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceee
Q 009079 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (544)
Q Consensus 283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (544)
++|.+..+|. +..+++|+++++++|.+..++.. .+.++.+
T Consensus 223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---------------------------------------~~~L~~L 262 (454)
T 1jl5_A 223 GNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---------------------------------------PPSLEAL 262 (454)
T ss_dssp CSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---------------------------------------CTTCCEE
T ss_pred cCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---------------------------------------ccccCEE
Confidence 8877777764 77778888888888776544311 1356777
Q ss_pred ecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCC-CCCCEEECCCCCCCc
Q 009079 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQ 441 (544)
Q Consensus 363 ~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~i~~ 441 (544)
++++|.+..+|.. .++|+.|++++|.+++++.. .++|+.|++++|.++.+. .+ ++|++|++++|++.+
T Consensus 263 ~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 263 NVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC
T ss_pred ECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc
Confidence 7777777776653 36788888888888776532 367888888888877643 23 588888888888887
Q ss_pred CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc---cCccccCC-------------CCCCeeec
Q 009079 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE---APTDILRL-------------QQLRILDL 505 (544)
Q Consensus 442 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~---i~~~~~~~-------------~~L~~L~l 505 (544)
++.. +++|+.|++++|.++.+.. .+++|+.|++++|.++. +|..+..+ ++|+.|++
T Consensus 332 lp~~----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 332 LPAL----PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp CCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred cccc----CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 6542 5788888888888876544 46788888888888775 45566555 78999999
Q ss_pred CCCCCCCCCcccccceeeeEeccCCccccccccc
Q 009079 506 SQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQF 539 (544)
Q Consensus 506 ~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~~~~ 539 (544)
++|+++.+|.. ..+++.|++.+|.+.+...|
T Consensus 404 s~N~l~~~~~i---P~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 404 ETNPLREFPDI---PESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ----------------------------------
T ss_pred CCCcCCccccc---hhhHhheeCcCcccCCcccc
Confidence 99999864432 13567778888888766554
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-38 Score=333.05 Aligned_cols=463 Identities=22% Similarity=0.264 Sum_probs=334.1
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcch-h
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A 86 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~ 86 (544)
..+++|||++|.|+.+|+..|.. +++|++|++++|.|+.++. +|.++++|++|++++|+++.+|. +
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 47899999999999999877666 6779999999999998865 79999999999999999998875 7
Q ss_pred hhCCCCccEEEccCCccccCCcc-ccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCccccCC-ccccCCC--
Q 009079 87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCS-- 160 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~-- 160 (544)
|.++++|++|++++|.++.++.. |+.+++|++|++++|.++. +|..++.+++|++|++++|.+..++ ..+..+.
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 89999999999999999988764 8999999999999999984 5677889999999999999987553 2232222
Q ss_pred --CceEEEecCCccccccchhhcCccccceEEcCCCcCC-----------------------------------------
Q 009079 161 --KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN----------------------------------------- 197 (544)
Q Consensus 161 --~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------------------------- 197 (544)
....++++.+.++.+....+.. ..+..+++.++...
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 2335666666655544432222 12223333222110
Q ss_pred ------------------CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEE
Q 009079 198 ------------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 259 (544)
Q Consensus 198 ------------------~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~ 259 (544)
.+...+.....++.+.+.++.+..+ ..+.....++.+++.++.+..++. ..++.|+.++
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~ 355 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLT 355 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCc--ccchhhhhcc
Confidence 0001112222334444444433333 123444566666666666655533 3456677777
Q ss_pred CCCCcCcccchhcccccccEEEccCCCCCC---CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCC
Q 009079 260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336 (544)
Q Consensus 260 l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (544)
+..+.+...........++.++++.|.+.. .+..+..+.+++.+++..+..........
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~------------------ 417 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL------------------ 417 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT------------------
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc------------------
Confidence 777666655554455668999999987765 44456678889999988887644332111
Q ss_pred CccccccchhhhhhhhhcccccceeeecCCCccCCCc--hhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCC
Q 009079 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN 413 (544)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~--~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~ 413 (544)
....++.+++.++...... ..+..+.+++.++++.|.+..+ +..+..++.++.|++++|
T Consensus 418 ------------------~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 418 ------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp ------------------TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred ------------------ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence 1245677777777655332 3455678899999999998874 445788899999999998
Q ss_pred CC-CCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc-C
Q 009079 414 KI-KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-P 491 (544)
Q Consensus 414 ~l-~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~ 491 (544)
.+ ..+.+..|..+++|++|++++|++++++...|.++++|++|++++|+++.+.+..|+.+++|+.|+|++|.++.+ |
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 64 345556678899999999999999998888899999999999999999999999999999999999999999866 4
Q ss_pred ccccCC-CCCCeeecCCCCCCCCCcccccceee
Q 009079 492 TDILRL-QQLRILDLSQNSLQSIPEVTYIFVML 523 (544)
Q Consensus 492 ~~~~~~-~~L~~L~l~~n~l~~l~~~l~~~~~L 523 (544)
..+..+ ++|+.|++++|++.+-.+..+...++
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 556666 68999999999988654443333333
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-38 Score=315.57 Aligned_cols=406 Identities=24% Similarity=0.273 Sum_probs=258.9
Q ss_pred hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCccc-chhHhhcCCCCC-------------CEE
Q 009079 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TVL 73 (544)
Q Consensus 8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L-------------~~L 73 (544)
.+.+++++++++.++.+|+.+.. +++|++|++++|.+. .+|..+.++++| ++|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred cccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence 57899999999999999876543 688999999999887 788888888764 999
Q ss_pred EcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCC
Q 009079 74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153 (544)
Q Consensus 74 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 153 (544)
++++|.++.+|.. .++|++|++++|.++.+|.. .++|++|++++|.++.++.. .++|++|++++|.+..+|
T Consensus 77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 77 ELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred EecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence 9999999988763 47899999999999988754 47899999999999887642 268999999999999988
Q ss_pred ccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCC
Q 009079 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233 (544)
Q Consensus 154 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 233 (544)
.+..+++|++|++++|.++.++.. ..+|++|++++|.++.+| .+..+++|+.|++++|.++.+|... ++|+
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE 218 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence 589999999999999999876643 358999999999999887 6899999999999999998876543 5899
Q ss_pred EEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccc
Q 009079 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (544)
Q Consensus 234 ~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~ 313 (544)
.+++++|.+..+|. +..+++|+.|++++|.++.++.. ..+|++|++++|.+.++|.. .++|+++++++|.++.+
T Consensus 219 ~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 219 SIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp EEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred EEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence 99999999998885 88999999999999999887653 35699999999999887764 37889999999887654
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCC
Q 009079 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393 (544)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~ 393 (544)
+. .++.++.+++++|.+..++.. .++|++|++++|.++
T Consensus 293 ~~---------------------------------------~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 293 SE---------------------------------------LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLI 330 (454)
T ss_dssp SC---------------------------------------CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCS
T ss_pred cC---------------------------------------cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccc
Confidence 21 113556666666666544321 135666666666666
Q ss_pred CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCC
Q 009079 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS 473 (544)
Q Consensus 394 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 473 (544)
++|.. +++|++|++++|.++.++. .+++|++|++++|++.+++.. ...+..|.. |......+ ..
T Consensus 331 ~lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~i----p~~l~~L~~--n~~~~~i~---~~ 394 (454)
T 1jl5_A 331 ELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PESVEDLRM--NSHLAEVP---EL 394 (454)
T ss_dssp CCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTTCCEEEC--CC-----------
T ss_pred ccccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCC----hHHHHhhhh--cccccccc---cc
Confidence 65543 4566666666666665544 356666666666666553210 112222322 22211111 12
Q ss_pred CccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079 474 LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 474 l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~ 511 (544)
+++|+.|++++|.++.+|.. -++++.|.+.+|.+.
T Consensus 395 ~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp --------------------------------------
T ss_pred cCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence 48899999999998854321 235788888888877
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-36 Score=305.02 Aligned_cols=347 Identities=26% Similarity=0.400 Sum_probs=193.6
Q ss_pred CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 125 (544)
+++.|+++++.+..++ .+..+++|++|++++|.+..++. +.++++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred cccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 4555555555554443 24445555555555555554443 4455555555555555544433 4445555555555554
Q ss_pred CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (544)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (544)
++.++. + ..+++|++|++++|.+..++. +..+++|++|++. +.+..++ .+..
T Consensus 124 l~~~~~-~-----------------------~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~-~~~~ 175 (466)
T 1o6v_A 124 ITDIDP-L-----------------------KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLK-PLAN 175 (466)
T ss_dssp CCCCGG-G-----------------------TTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCG-GGTT
T ss_pred CCCChH-H-----------------------cCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCch-hhcc
Confidence 444432 4 444444455544444444332 4444445554443 2222222 2555
Q ss_pred CCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (544)
Q Consensus 206 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~ 285 (544)
+++|+.|++++|.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.++.++......+|+.|++++|
T Consensus 176 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC
Confidence 555666666655555442 24555566666666665555433 4555666666666666555443333334555555555
Q ss_pred CCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecC
Q 009079 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (544)
Q Consensus 286 ~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (544)
.+.++++ +..+++|++|++++|.+..+
T Consensus 254 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~---------------------------------------------------- 280 (466)
T 1o6v_A 254 QISNLAP-LSGLTKLTELKLGANQISNI---------------------------------------------------- 280 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSCCCCC----------------------------------------------------
T ss_pred ccccchh-hhcCCCCCEEECCCCccCcc----------------------------------------------------
Confidence 5555443 55566666666666654322
Q ss_pred CCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCC
Q 009079 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445 (544)
Q Consensus 366 ~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 445 (544)
+. +..+++|+.|++++|.+++++. +..+++|+.|++++|.++++.+ +..+++|++|++++|++.+++
T Consensus 281 -------~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-- 347 (466)
T 1o6v_A 281 -------SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-- 347 (466)
T ss_dssp -------GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--
T ss_pred -------cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--
Confidence 11 3345667777777777766554 6667777777777777776654 566777777777777777663
Q ss_pred ccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc
Q 009079 446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD 493 (544)
Q Consensus 446 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~ 493 (544)
.+..+++|+.|++++|++++..+ +..+++|+.|++++|.++.+|..
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence 36677777777777777766654 66677777777777777665543
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.8e-36 Score=302.14 Aligned_cols=350 Identities=22% Similarity=0.335 Sum_probs=274.4
Q ss_pred CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecC
Q 009079 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (544)
Q Consensus 90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 169 (544)
+++|+.|+++++.+..++. +..+++|++|++++|.++.++. ++++++|++|++++|.+..++. +..+++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 4456666666666555542 5556666666666666666554 6666677777777776666655 67788888888888
Q ss_pred CccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (544)
Q Consensus 170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l 249 (544)
|.++.++. +..+++|++|++++|.+..++ .+..+++|+.|++++ .+..++ .+..+++|+.|++++|.+..++. +
T Consensus 122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l 195 (466)
T 1o6v_A 122 NQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDISV-L 195 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCChh-h
Confidence 88877765 788899999999999888775 478888999999863 444443 37788889999999888887754 7
Q ss_pred hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHH
Q 009079 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (544)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (544)
..+++|+.|++++|.+..+.......+|++|++++|.+..++ .+..+++|++|++++|.+..
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~----------------- 257 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN----------------- 257 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-----------------
T ss_pred ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc-----------------
Confidence 788888888888888887766555556888888888777653 46677777777777776533
Q ss_pred hhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEE
Q 009079 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409 (544)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ 409 (544)
++. +..+++|++|++++|.++.++. +..+++|++|+
T Consensus 258 ------------------------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 258 ------------------------------------------LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLE 293 (466)
T ss_dssp ------------------------------------------CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred ------------------------------------------chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEE
Confidence 222 4457899999999999999876 88999999999
Q ss_pred ccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc
Q 009079 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489 (544)
Q Consensus 410 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 489 (544)
+++|.++++.+ +..+++|+.|++++|++.++.. +..+++|+.|++++|.++.+ ..++.+++|+.|++++|.++.
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 99999998766 7899999999999999998765 77899999999999999887 468999999999999999997
Q ss_pred cCccccCCCCCCeeecCCCCCCCCCccc
Q 009079 490 APTDILRLQQLRILDLSQNSLQSIPEVT 517 (544)
Q Consensus 490 i~~~~~~~~~L~~L~l~~n~l~~l~~~l 517 (544)
++. +..+++|+.|++++|+++.+|..+
T Consensus 368 ~~~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred cch-hhcCCCCCEEeccCCcccCCchhh
Confidence 765 788999999999999999876543
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-35 Score=298.04 Aligned_cols=381 Identities=22% Similarity=0.254 Sum_probs=245.4
Q ss_pred ccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCc-chhhhCCCCccEEEccCCccc-cC-CccccccCCccEEEcCC
Q 009079 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS 123 (544)
Q Consensus 47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~-~l-~~~~~~~~~L~~L~l~~ 123 (544)
-+.++.++..++.+|. + .++|++|++++|.++.+ +.++.++++|++|++++|.+. .+ +..|..+++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4567888888888876 3 27889999998888866 567888889999999888776 44 44588888888888888
Q ss_pred CCCccC-CcccccCcCCCEEEcCCCcccc-CCcc--ccCCCCceEEEecCCccccccch-hhcCccccceEEcCCCcCCC
Q 009079 124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG 198 (544)
Q Consensus 124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 198 (544)
|.++.+ |..++.+++|++|++++|.+.. .+.. +..+++|++|++++|.++.+... .+..+++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 888755 5567778888888888887764 2222 66677777777777777665433 35666666666666666654
Q ss_pred C-cccccCC--CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhccc-
Q 009079 199 M-PETIGSL--SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ- 274 (544)
Q Consensus 199 ~-~~~l~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~- 274 (544)
+ +..+..+ .+|+.++++++.+..++...... .....+..+++|++|++++|.+.......+.
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhhc
Confidence 3 2333333 45666666665555443211000 0000122345555566655555432221111
Q ss_pred ----ccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhh
Q 009079 275 ----LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (544)
Q Consensus 275 ----~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
.+++.+++++|...........++...
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~------------------------------------------------- 265 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPD------------------------------------------------- 265 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCC-------------------------------------------------
T ss_pred cccccceeeEeeccccccccccchhhhccCc-------------------------------------------------
Confidence 224444444443222100000000000
Q ss_pred hhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCC
Q 009079 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (544)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 429 (544)
.........++|+.+++++|.++. .+..+..+++|++|++++|.++++.+..|..+++|
T Consensus 266 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 266 --------------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp --------------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred --------------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 000000113567888888887776 45567778888888888888887776667788888
Q ss_pred CEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCC
Q 009079 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQN 508 (544)
Q Consensus 430 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n 508 (544)
++|++++|++.++....+..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+|.. +..+++|+.|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 8888888888777666777888888888888888877777788888888888888888877654 356888888888888
Q ss_pred CCCCC
Q 009079 509 SLQSI 513 (544)
Q Consensus 509 ~l~~l 513 (544)
+++.-
T Consensus 406 ~l~~~ 410 (455)
T 3v47_A 406 PWDCS 410 (455)
T ss_dssp CBCCC
T ss_pred CcccC
Confidence 88743
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.4e-36 Score=299.97 Aligned_cols=137 Identities=26% Similarity=0.337 Sum_probs=127.0
Q ss_pred CCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEe
Q 009079 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481 (544)
Q Consensus 402 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 481 (544)
.++|+.|++++|.+++..+..+..+++|++|++++|++.++....+..+++|++|++++|.++.+.+..|+.+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 47899999999999998888889999999999999999998888899999999999999999999889999999999999
Q ss_pred ecCCccccc-CccccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCcccccccc
Q 009079 482 LRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 482 ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
+++|.++.+ |..+..+++|++|++++|+++.+|. .+..+++|+.|++++|++.+++.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999966 6778889999999999999998864 56899999999999999998864
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-34 Score=288.57 Aligned_cols=222 Identities=23% Similarity=0.302 Sum_probs=149.3
Q ss_pred ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 123 (544)
+++|++|+++++.++.+| .+..+++|++|++++|.++.++ +..+++|++|++++|.++.++ +..+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 456777777777777665 5667777777777777777664 666777777777777777664 66677777777777
Q ss_pred CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCc-cccccchhhcCccccceEEcCCCcCCCCccc
Q 009079 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (544)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (544)
|.++.++ ++.+++|++|++++|.+..++ +..+++|++|++++|. +..+ .+..+++|++|++++|.++.+|
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~-- 186 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD-- 186 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--
T ss_pred CcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec--
Confidence 7777664 666777777777777777653 5667777777777763 3333 2566677777777777777665
Q ss_pred ccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEc
Q 009079 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (544)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l 282 (544)
+..+++|+.|++++|.++.+ .+..+++|+.|++++|.+..+| +..+++|+.|++++|.+++++... ...|+.+++
T Consensus 187 l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~-l~~L~~L~l 261 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST-LSKLTTLHC 261 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTT-CTTCCEEEC
T ss_pred cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHH-CCCCCEEec
Confidence 66677777777777777766 3666777777777777777765 566777777777777766654222 223444444
Q ss_pred cC
Q 009079 283 SN 284 (544)
Q Consensus 283 ~~ 284 (544)
+.
T Consensus 262 ~~ 263 (457)
T 3bz5_A 262 IQ 263 (457)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-35 Score=293.57 Aligned_cols=231 Identities=25% Similarity=0.311 Sum_probs=202.8
Q ss_pred HhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCE
Q 009079 62 EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSD 141 (544)
Q Consensus 62 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 141 (544)
..+.++++|++|++++|.++.+| .+..+++|++|++++|.++.++ +..+++|++|++++|.++.++ ++++++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 36778899999999999999887 7899999999999999999885 889999999999999999885 889999999
Q ss_pred EEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCc-CCCCcccccCCCceeEEEccCCccc
Q 009079 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLIRLDLHQNRIL 220 (544)
Q Consensus 142 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~ 220 (544)
|++++|.+..++ +..+++|++|++++|.++.++ ++.+++|++|++++|. +..+ .+..+++|+.|++++|.++
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 999999999875 889999999999999999874 7889999999999994 4555 4788899999999999999
Q ss_pred cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCc
Q 009079 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300 (544)
Q Consensus 221 ~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L 300 (544)
.++ +..+++|+.+++++|.+..++ +..+++|+.|++++|.+++++ .....+|+.|++++|.+.+++ +..+++|
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~--~~~l~~L 256 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD--VSTLSKL 256 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred eec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC--HHHCCCC
Confidence 986 788999999999999999874 788999999999999999987 333456999999999998876 5677888
Q ss_pred ceeccCCCCCc
Q 009079 301 RKLLLTGNPLR 311 (544)
Q Consensus 301 ~~L~l~~~~~~ 311 (544)
+.++++++.++
T Consensus 257 ~~L~l~~n~L~ 267 (457)
T 3bz5_A 257 TTLHCIQTDLL 267 (457)
T ss_dssp CEEECTTCCCS
T ss_pred CEEeccCCCCC
Confidence 88888777553
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-32 Score=266.31 Aligned_cols=307 Identities=19% Similarity=0.334 Sum_probs=180.2
Q ss_pred hcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEE
Q 009079 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (544)
Q Consensus 64 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 143 (544)
+..+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 445677778888777777765 36677777777777777776655 677777777777777776654 466666666666
Q ss_pred cCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCC
Q 009079 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (544)
Q Consensus 144 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~ 223 (544)
+++|.+..++. +..+++|++|++++|.... ....+..+++|++|++++|.+..++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLS------------------------DLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCC------------------------CCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcc------------------------cccchhhCCCCcEEEecCCCcCCch
Confidence 66666665544 5555566666665553221 1122444445555555555444432
Q ss_pred cCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCccee
Q 009079 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL 303 (544)
Q Consensus 224 ~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L 303 (544)
. +..+++|+.+++++|.+..++. +..+++|+.+++++|.+..+.......+|++|++++|.+..++. +..+++|+++
T Consensus 172 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 248 (347)
T 4fmz_A 172 P-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWL 248 (347)
T ss_dssp G-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred h-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence 2 4445555555555555554433 45555555555555555544332222334555555555544444 5556666666
Q ss_pred ccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCcc
Q 009079 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (544)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~ 383 (544)
++++|.+..+ +.+..+++|+
T Consensus 249 ~l~~n~l~~~------------------------------------------------------------~~~~~l~~L~ 268 (347)
T 4fmz_A 249 EIGTNQISDI------------------------------------------------------------NAVKDLTKLK 268 (347)
T ss_dssp ECCSSCCCCC------------------------------------------------------------GGGTTCTTCC
T ss_pred ECCCCccCCC------------------------------------------------------------hhHhcCCCcC
Confidence 6666654321 1233355667
Q ss_pred EEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCccc
Q 009079 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (544)
Q Consensus 384 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l 463 (544)
.|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|++|++++|++++++. +..+++|++|++++|.+
T Consensus 269 ~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 7777777666653 46666777777777777766666666777777777777777666544 55666666666666654
Q ss_pred C
Q 009079 464 S 464 (544)
Q Consensus 464 ~ 464 (544)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 3
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-32 Score=265.75 Aligned_cols=305 Identities=20% Similarity=0.340 Sum_probs=187.6
Q ss_pred ccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEc
Q 009079 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191 (544)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 191 (544)
.+++|+.|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEEC
Confidence 3344444444444444332 23444444444444444444433 444555555555555555443 2555556666666
Q ss_pred CCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchh
Q 009079 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 271 (544)
++|.+..++. +..+++|+.|++++|........+..+++|+.+++++|.+..++. +..+++|++|++++|.+.+++
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-- 193 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-- 193 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG--
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc--
Confidence 6666655544 666777777777777544444446666777777777776666544 566666666666666555433
Q ss_pred cccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhh
Q 009079 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (544)
Q Consensus 272 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
. +..+++|+.+++++|.+..+.
T Consensus 194 --------------------~-~~~l~~L~~L~l~~n~l~~~~------------------------------------- 215 (347)
T 4fmz_A 194 --------------------P-LASLTSLHYFTAYVNQITDIT------------------------------------- 215 (347)
T ss_dssp --------------------G-GGGCTTCCEEECCSSCCCCCG-------------------------------------
T ss_pred --------------------c-ccCCCccceeecccCCCCCCc-------------------------------------
Confidence 2 455566666666665543221
Q ss_pred hhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCE
Q 009079 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431 (544)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 431 (544)
. +..+++|++|++++|.++.++. +..+++|++|++++|.+++++ .+..+++|++
T Consensus 216 ----------------------~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 269 (347)
T 4fmz_A 216 ----------------------P-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKM 269 (347)
T ss_dssp ----------------------G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred ----------------------h-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcCCCcCE
Confidence 1 2334567777777777766655 667777777777777777653 3567777777
Q ss_pred EECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 432 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~ 511 (544)
|++++|++.+++ .+..+++|+.|++++|.++...+..++.+++|+.|++++|.++.++. +..+++|+.|++++|+++
T Consensus 270 L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 270 LNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred EEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 777777777763 36677778888888887777776777778888888888888877655 677888888888888775
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=277.84 Aligned_cols=312 Identities=21% Similarity=0.291 Sum_probs=163.9
Q ss_pred cEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCC-ccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCc
Q 009079 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (544)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (544)
+.++.++++++.+|..+. ++++.|++++|.+..++ ..+.++++|++|++++|.++.+....|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456666667777765442 46777777777776553 456667777777777777666665566666667777776666
Q ss_pred CCCCcc-cccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhc
Q 009079 196 LNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA 272 (544)
Q Consensus 196 ~~~~~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~ 272 (544)
+..++. .+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 666653 356666666666666666643 34556666666666666666543 334556666666666666555544322
Q ss_pred cc--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhh
Q 009079 273 CQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349 (544)
Q Consensus 273 ~~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (544)
+. .+|+.|++++|.+..++. .+..+++|++|++++|...
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~-------------------------------------- 213 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-------------------------------------- 213 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC--------------------------------------
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc--------------------------------------
Confidence 11 224444444444443221 2333444444444333211
Q ss_pred hhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCC
Q 009079 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSS 428 (544)
Q Consensus 350 ~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 428 (544)
..++.......+|++|++++|.++.+|. .+..+++|+.|++++|.++.+....|..+++
T Consensus 214 --------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 214 --------------------DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp --------------------CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred --------------------cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence 0111222222344455555554444442 2444445555555555444444444444455
Q ss_pred CCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 429 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
|+.|++++|++..+....|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555555444444444444445555555555444444444444445555555544443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-32 Score=268.47 Aligned_cols=305 Identities=22% Similarity=0.265 Sum_probs=158.8
Q ss_pred CcCCCEEEcCCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc-ccccCCCceeEEE
Q 009079 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD 213 (544)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~ 213 (544)
+++++.++++++.+..+|.. +..+++|++|+++++.++.++...+..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666655543 355566666666666666655555666666666666666665543 3455666666666
Q ss_pred ccCCccccCCcC-CccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCC
Q 009079 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (544)
Q Consensus 214 l~~~~~~~l~~~-~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~ 291 (544)
+++|.++.+|.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------- 181 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 181 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------------------
Confidence 666666655544 35556666666666665544 233555566666666655555432
Q ss_pred ccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC
Q 009079 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (544)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (544)
+..+++|+.+++++|.+..++ .+..+++++++++.+..
T Consensus 182 --~~~l~~L~~L~l~~n~l~~~~----------------------------------------~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYNLLSTLA----------------------------------------IPIAVEELDASHNSINV 219 (390)
T ss_dssp --GGGCTTCSEEECCSSCCSEEE----------------------------------------CCSSCSEEECCSSCCCE
T ss_pred --cccccccceeecccccccccC----------------------------------------CCCcceEEECCCCeeee
Confidence 233445555555555443211 00122222222222222
Q ss_pred CchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (544)
Q Consensus 372 i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 451 (544)
++... .++|+.|++++|.+++. ..+..+++|++|++++|.++++.+..|..+++|++|++++|++..++.. +..++
T Consensus 220 ~~~~~--~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~ 295 (390)
T 3o6n_A 220 VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIP 295 (390)
T ss_dssp EECCC--CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCCT
T ss_pred ccccc--cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCCC
Confidence 22211 23555555555555554 2455555555555555555555444455555555555555555554332 34455
Q ss_pred CcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~ 511 (544)
+|+.|++++|.+..+. ..+..+++|+.|++++|.++.++ +..+++|+.|++++|++.
T Consensus 296 ~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 296 TLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCEEECCCCcceecC-ccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 5555555555554332 22344455555555555555443 344555555555555554
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=269.09 Aligned_cols=309 Identities=21% Similarity=0.273 Sum_probs=145.2
Q ss_pred EEEccCCccccCCccccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccC-CccccCCCCceEEEecCCcc
Q 009079 95 SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKL 172 (544)
Q Consensus 95 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 172 (544)
.++.+++.++.+|..+. ++++.|++++|.++.++ ..+.++++|++|++++|.+..+ +..+.++++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 44444444444444332 34555555555555432 3444555555555555555433 33445555555555555555
Q ss_pred ccccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcCch-hh
Q 009079 173 TVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-EL 249 (544)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l~~-~l 249 (544)
+.++...+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 555444455555555555555555433 23444555555555555554433 2344445555555555555554432 34
Q ss_pred hCCCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCCC-CCccccCCCCcceeccCCCCCccccccccCCCchHHH
Q 009079 250 GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326 (544)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 326 (544)
..+++|+.|++++|.+..++...+. .+|++|++++|...+ ++.......+|++|++++|.+..
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------------- 238 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-------------- 238 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS--------------
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc--------------
Confidence 4555555555555555444332222 225555555543322 33322223344444444433321
Q ss_pred HHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCc-hhhccCCCccEEEcCCCCCCCCCh-hhhcCCC
Q 009079 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELPP-ELSSCAS 404 (544)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~ 404 (544)
++ ..+..+++|+.|++++|.++.++. .+..+++
T Consensus 239 ---------------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 239 ---------------------------------------------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp ---------------------------------------------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred ---------------------------------------------cCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence 11 122234455555555555544332 2444555
Q ss_pred CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccC
Q 009079 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (544)
Q Consensus 405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~ 464 (544)
|++|++++|.++.+.+..|..+++|+.|++++|+++.++...|..+++|+.|++++|.+.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555555555544444455555555555555555554444455555555555555443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=5.9e-31 Score=259.01 Aligned_cols=150 Identities=19% Similarity=0.287 Sum_probs=64.4
Q ss_pred CCCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEc
Q 009079 68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA 144 (544)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 144 (544)
+++++++++++.++.+|. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .++.+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 444444444444444433 23444444444444444443322 34444444444444444443322 2344444444444
Q ss_pred CCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCcc
Q 009079 145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219 (544)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 219 (544)
++|.+..++.. +..+++|++|++++|.++.+....+..+++|++|++++|.++.++ +..+++|+.+++++|.+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence 44444444333 234444444444444444444333444444444444444443331 23334444444444433
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=4.9e-31 Score=273.57 Aligned_cols=305 Identities=22% Similarity=0.236 Sum_probs=153.4
Q ss_pred CcCCCEEEcCCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc-ccccCCCceeEEE
Q 009079 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD 213 (544)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~ 213 (544)
+.+++.++++++.+..+|.. +..+++|+.|++++|.++.++...+..+++|++|++++|.+..++ ..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45566666666666655543 344566666666666666555555666666666666666665543 2345566666666
Q ss_pred ccCCccccCCcC-CccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCC
Q 009079 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (544)
Q Consensus 214 l~~~~~~~l~~~-~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~ 291 (544)
+++|.++.+|.. +..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence 666666555443 35555666666666655544 234555555665555555554432
Q ss_pred ccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC
Q 009079 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (544)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (544)
+..+++|+.+++++|.+..++
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l~--------------------------------------------------------- 208 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTLA--------------------------------------------------------- 208 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred --hhhhhhhhhhhcccCcccccc---------------------------------------------------------
Confidence 233445555555555443211
Q ss_pred CchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (544)
Q Consensus 372 i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 451 (544)
..+.|+.|++++|.++.++..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.++....+..++
T Consensus 209 ------~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 209 ------IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ------CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ------CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 0123444444444443332211 13444444444444432 1234444444444444444444333444444
Q ss_pred CcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCc
Q 009079 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTE 531 (544)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n 531 (544)
+|+.|++++|.++.+. ..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+++.++ +..+++|+.|++++|
T Consensus 279 ~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 279 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp SCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 4455555444444432 2233445555555555555555555545555555555555555443 344555555555555
Q ss_pred ccc
Q 009079 532 LVD 534 (544)
Q Consensus 532 ~~~ 534 (544)
++.
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 554
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-29 Score=242.21 Aligned_cols=288 Identities=22% Similarity=0.255 Sum_probs=221.5
Q ss_pred ccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEEC
Q 009079 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDL 260 (544)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l 260 (544)
...++.++++++.++.+|..+. +.++.|++++|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3467788888888777776553 578888888888887755 678888888888888888866 677888889999999
Q ss_pred CCCcCcccchhcccccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (544)
Q Consensus 261 ~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (544)
++|.++.++.... ..|++|++++|.+..++. .+..+++|+.+++++|.+...+
T Consensus 108 s~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------- 161 (330)
T 1xku_A 108 SKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG------------------------- 161 (330)
T ss_dssp CSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------------------
T ss_pred CCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC-------------------------
Confidence 9988887776554 568999999998888655 4788999999999988764311
Q ss_pred ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCC
Q 009079 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~ 419 (544)
..+..+..+++|++|++++|.++.+|..+. ++|++|++++|.++.+.
T Consensus 162 -------------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 162 -------------------------------IENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD 208 (330)
T ss_dssp -------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred -------------------------------cChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC
Confidence 122344556788888888888888776543 78888888888888877
Q ss_pred HHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcccc----
Q 009079 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL---- 495 (544)
Q Consensus 420 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~---- 495 (544)
+..+..+++|++|++++|++.+++...+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++....
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence 77788888888888888888887776788888888888888888755 3457788888888888888887754432
Q ss_pred ---CCCCCCeeecCCCCCCC--C-CcccccceeeeEeccCCcc
Q 009079 496 ---RLQQLRILDLSQNSLQS--I-PEVTYIFVMLQKKSINTEL 532 (544)
Q Consensus 496 ---~~~~L~~L~l~~n~l~~--l-~~~l~~~~~L~~l~l~~n~ 532 (544)
..+.++.|++++|++.. + |..+..++.++.+++++|+
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 24788899999998873 4 5678888999999998884
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=263.57 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=100.8
Q ss_pred CCCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEc
Q 009079 68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA 144 (544)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 144 (544)
.+++.++++++.+..+|. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 445555555555554443 23445555555555555544432 34455555555555555544432 2344445555555
Q ss_pred CCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCC
Q 009079 145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (544)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~ 223 (544)
++|.+..+|.. +..+++|++|++++|.++.+....+..+++|++|++++|.+..++ +..+++|+.+++++|.++.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence 55544444433 244455555555555444444444444444444444444444332 23334444444444443322
Q ss_pred cCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCC-CccccCCCCcce
Q 009079 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRK 302 (544)
Q Consensus 224 ~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~ 302 (544)
...+.|+.|++++|.+..++..+ .++|+.|++++|.+++.+.......|+.|++++|.+.++ |..+..+++|+.
T Consensus 208 ---~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 ---AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ---ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ---cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 11223444444444444332211 133444444444433322222222233333333333331 233444444444
Q ss_pred eccCCCCC
Q 009079 303 LLLTGNPL 310 (544)
Q Consensus 303 L~l~~~~~ 310 (544)
|++++|.+
T Consensus 283 L~Ls~N~l 290 (597)
T 3oja_B 283 LYISNNRL 290 (597)
T ss_dssp EECTTSCC
T ss_pred EECCCCCC
Confidence 44444443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-29 Score=238.99 Aligned_cols=281 Identities=21% Similarity=0.292 Sum_probs=236.4
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAA 86 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~ 86 (544)
..++.++++++.++.+|..+. ++++.|+++++.++.++. .+.++++|++|++++|.++.+ |.+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 368899999999998886543 469999999999997765 789999999999999999977 778
Q ss_pred hhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCccc---cCCccccCCCCc
Q 009079 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKM 162 (544)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L 162 (544)
+..+++|++|++++|.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+. ..+..+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 9999999999999999998887654 789999999999997764 5788999999999999886 345668889999
Q ss_pred eEEEecCCccccccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCC
Q 009079 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN 240 (544)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~ 240 (544)
++|++++|.++.++...+ ++|++|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|
T Consensus 174 ~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 999999999988776533 7899999999999876 5788999999999999999987654 6888999999999999
Q ss_pred cCCcCchhhhCCCCCCEEECCCCcCcccchhccc--------ccccEEEccCCCCCC---CCccccCCCCcceeccCCCC
Q 009079 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP 309 (544)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~ 309 (544)
.+..+|..+..+++|+.|++++|.++.++...+. ..++.+++++|.+.. .|..+..+..++.+++++|+
T Consensus 251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999899999999999999999988766553 348899999998764 34567888899999998873
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.3e-28 Score=236.57 Aligned_cols=286 Identities=21% Similarity=0.349 Sum_probs=178.6
Q ss_pred CCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccC
Q 009079 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQ 216 (544)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~ 216 (544)
+++.++++++.+..+|..+. ++|+.|++++|.++.+....+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 46666666666666665443 5677777777777766665677777777777777777655 56677777788888887
Q ss_pred CccccCCcCCccCCCCCEEEccCCcCCcCch-hhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCcccc
Q 009079 217 NRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG 295 (544)
Q Consensus 217 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~ 295 (544)
|.++.+|..+. ++|++|++++|.+..++. .+..+++|+.|++++|.++.... .+..+.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------~~~~~~ 170 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-------------------EPGAFD 170 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-------------------CTTSSC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-------------------Cccccc
Confidence 77777766554 678888888888776654 46778888888888777653211 122233
Q ss_pred CCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchh
Q 009079 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375 (544)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~ 375 (544)
.+ +|+++++++|.+..++. .
T Consensus 171 ~l-~L~~L~l~~n~l~~l~~-----------------------------------------------------------~ 190 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTGIPK-----------------------------------------------------------D 190 (332)
T ss_dssp SC-CCSCCBCCSSBCSSCCS-----------------------------------------------------------S
T ss_pred CC-ccCEEECcCCCCCccCc-----------------------------------------------------------c
Confidence 33 66666666665543221 1
Q ss_pred hccCCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079 376 IWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (544)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 454 (544)
+ .++|++|++++|.++.++ ..+..+++|++|++++|.++.+.+..+..+++|++|++++|++..++.. +..+++|+
T Consensus 191 ~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~ 267 (332)
T 2ft3_A 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQ 267 (332)
T ss_dssp S--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCC
T ss_pred c--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCC
Confidence 1 134555555655555543 3455666666666666666666555566666666666666666655543 55666666
Q ss_pred eEecCCcccCCCCCCCCCC------CccCceEeecCCccc--cc-CccccCCCCCCeeecCCCC
Q 009079 455 ILDLSYNIASLPENPPFSS------LPHLQELYLRRMQLR--EA-PTDILRLQQLRILDLSQNS 509 (544)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~------l~~L~~L~ls~n~l~--~i-~~~~~~~~~L~~L~l~~n~ 509 (544)
.|++++|.++.+....|.. .+.|+.|++++|.+. .+ |..+..++.|+.+++++|+
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6666666666666555544 256777777777665 33 4445567777777777764
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.9e-31 Score=266.80 Aligned_cols=290 Identities=18% Similarity=0.212 Sum_probs=208.3
Q ss_pred hhcceeEcCCCcccccchH-HhhcccccCCCCceeeecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCCC
Q 009079 9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE 82 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~ 82 (544)
..+++||++++++++.+.. ++.. +++|++|++++|.++ .++..+..+++|++|++++|.+.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 5689999999998865432 2333 577999999999988 457788999999999999998874
Q ss_pred c-ch-hhhCCC----CccEEEccCCccc-----cCCccccccCCccEEEcCCCCCccCC-ccc-----ccCcCCCEEEcC
Q 009079 83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKELP-SSL-----GRCLNLSDFKAS 145 (544)
Q Consensus 83 l-~~-~~~~~~----~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~~~~L~~L~l~ 145 (544)
. +. .+..++ +|++|++++|.++ .++..+..+++|++|++++|.++... ..+ ...++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 2 22 233455 7999999999888 35677889999999999999887321 112 225679999999
Q ss_pred CCcccc-----CCccccCCCCceEEEecCCccccccchhhc-----CccccceEEcCCCcCCC-----CcccccCCCcee
Q 009079 146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI 210 (544)
Q Consensus 146 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~ 210 (544)
+|.+.. ++..+..+++|++|++++|.++......+. ..++|++|++++|.++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 998874 345566788999999999988754433332 35689999999998875 466777888999
Q ss_pred EEEccCCccccC------CcCCccCCCCCEEEccCCcCCc-----CchhhhCCCCCCEEECCCCcCcccchhccc-----
Q 009079 211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQ----- 274 (544)
Q Consensus 211 ~L~l~~~~~~~l------~~~~~~~~~L~~l~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~----- 274 (544)
+|++++|.++.. +..+..+++|+.|++++|.++. ++..+..+++|++|++++|.++........
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 999999887632 2223457889999999998885 677777888999999998887643322211
Q ss_pred --ccccEEEccCCCCCC-----CCccccCCCCcceeccCCCCC
Q 009079 275 --LRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPL 310 (544)
Q Consensus 275 --~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~~ 310 (544)
.+|++|++++|.++. ++..+..+++|++|++++|.+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 245666666655543 223344455555555555544
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-32 Score=277.52 Aligned_cols=348 Identities=20% Similarity=0.215 Sum_probs=210.7
Q ss_pred CCccEEEccCCccccCC--ccccccCCccEEEcCCCCCc-----cCCcccccCcCCCEEEcCCCccccC--CccccCCC-
Q 009079 91 HMLKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSL--PEDLADCS- 160 (544)
Q Consensus 91 ~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~- 160 (544)
++|++|+++++.++..+ ..+..+++|++|++++|.++ .++..+..+++|++|++++|.+... ......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777666332 22566677777777777665 2334455555666666666554421 01111122
Q ss_pred ---CceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccC-----CcC-CccCCC
Q 009079 161 ---KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-----PSS-ISGCCS 231 (544)
Q Consensus 161 ---~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-----~~~-~~~~~~ 231 (544)
+|++|++++|.++..... .++..+..+++|++|++++|.++.. ... ....++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~-------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCG-------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHH-------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHH-------------------HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence 355555544444421100 2344556666666666666665421 111 122446
Q ss_pred CCEEEccCCcCCc-----CchhhhCCCCCCEEECCCCcCcccchhcc-------cccccEEEccCCCCCC-----CCccc
Q 009079 232 LAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPEI 294 (544)
Q Consensus 232 L~~l~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~-------~~~L~~L~l~~~~l~~-----l~~~l 294 (544)
|++|++++|.+.. ++..+..+++|++|++++|.+........ ..+|++|++++|.+.. ++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 7777777776663 34556677888888888887765433222 1257888888887776 35557
Q ss_pred cCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCch
Q 009079 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374 (544)
Q Consensus 295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~ 374 (544)
..+++|++|++++|.+...... .+.+
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~------------------------------------------------------~l~~ 249 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMA------------------------------------------------------ELCP 249 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHH------------------------------------------------------HHHH
T ss_pred HhCCCccEEeccCCcCChHHHH------------------------------------------------------HHHH
Confidence 7788899999988876432100 0111
Q ss_pred hh-ccCCCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCCHHHHhC-----CCCCCEEECCCCCCCcCC
Q 009079 375 EI-WEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVP 443 (544)
Q Consensus 375 ~~-~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~n~i~~~~ 443 (544)
.+ ..+++|++|++++|.++. ++..+..+++|++|++++|.+++.....+.. .++|++|++++|.+++..
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 11 125677778888777776 5666677788888888888776544333332 267888888888777542
Q ss_pred ----CCccCCCCCcceEecCCcccCCCCCCCCCC-----CccCceEeecCCccc-----ccCccccCCCCCCeeecCCCC
Q 009079 444 ----SDGFKDIPMLQILDLSYNIASLPENPPFSS-----LPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNS 509 (544)
Q Consensus 444 ----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~ls~n~l~-----~i~~~~~~~~~L~~L~l~~n~ 509 (544)
...+..+++|++|++++|.+++.+...+.. +++|+.|++++|.++ .+|..+..+++|++|++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 223456678888888888776654443332 568888888888887 567777778888888888888
Q ss_pred CC
Q 009079 510 LQ 511 (544)
Q Consensus 510 l~ 511 (544)
++
T Consensus 410 i~ 411 (461)
T 1z7x_W 410 LG 411 (461)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8e-29 Score=238.05 Aligned_cols=191 Identities=26% Similarity=0.387 Sum_probs=109.5
Q ss_pred CccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCC-ccccCCCCceEEEecCCccccccchhhcCccccceEEcCC
Q 009079 115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (544)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (544)
+++.++++++.++.+|..+. ++++.|++++|.+..++ ..+.++++|++|++++|.++.+....+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 34445555555554444332 34555555555555442 3455556666666666666655555566666666666666
Q ss_pred CcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCc---CchhhhCCCCCCEEECCCCcCcccc
Q 009079 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA---LPAELGKLSKLGTLDLHSNQLKEYC 269 (544)
Q Consensus 194 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~---l~~~l~~~~~L~~L~l~~~~i~~~~ 269 (544)
|.++.+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.+.. .+..+..+ +|+.|++++|.++.++
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 66666655443 567777777777766654 35667777777777776652 23444445 6777777777766655
Q ss_pred hhcccccccEEEccCCCCCCCC-ccccCCCCcceeccCCCCCc
Q 009079 270 VEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLR 311 (544)
Q Consensus 270 ~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~ 311 (544)
.... ..|++|++++|.+..++ ..+..+++|++|++++|.+.
T Consensus 189 ~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 189 KDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp SSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred cccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 4332 34555555555555543 34555666666666665543
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.2e-26 Score=236.08 Aligned_cols=258 Identities=24% Similarity=0.254 Sum_probs=187.7
Q ss_pred ccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCc
Q 009079 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264 (544)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~ 264 (544)
.++.|+++++.++.+|..+. ++|+.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+.|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 46666666666666665444 567777777777666655 35667777777777766665 55677777777777
Q ss_pred CcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccc
Q 009079 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (544)
Q Consensus 265 i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (544)
++.++. ...+|+.|++++|.+..+|.. +++|++|++++|.+..++.
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----------------------------- 158 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----------------------------- 158 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC-----------------------------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC-----------------------------
Confidence 766655 344577777777777766653 3677777777776654431
Q ss_pred hhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh
Q 009079 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424 (544)
Q Consensus 345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 424 (544)
....++.+++++|.+..+| ..+++|+.|++++|.++.+|.. .++|+.|++++|.++.++.
T Consensus 159 ----------~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---- 218 (622)
T 3g06_A 159 ----------LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---- 218 (622)
T ss_dssp ----------CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----
T ss_pred ----------ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----
Confidence 1134666777777777766 3357889999999988887753 4788999999998887763
Q ss_pred CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeee
Q 009079 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504 (544)
Q Consensus 425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~ 504 (544)
.+++|+.|++++|+++.++ ..+++|+.|++++|.++.+.. .+++|+.|++++|.++.+|..+..+++|+.|+
T Consensus 219 ~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence 3588999999999888876 356889999999998887654 56889999999998888888888899999999
Q ss_pred cCCCCCCC
Q 009079 505 LSQNSLQS 512 (544)
Q Consensus 505 l~~n~l~~ 512 (544)
+++|+++.
T Consensus 291 L~~N~l~~ 298 (622)
T 3g06_A 291 LEGNPLSE 298 (622)
T ss_dssp CCSCCCCH
T ss_pred ecCCCCCC
Confidence 99998873
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.5e-29 Score=263.60 Aligned_cols=421 Identities=13% Similarity=0.057 Sum_probs=234.1
Q ss_pred hHhhcCCCCCCEEEcCCCCCC----C------------cchhhhCCCCccEEEccCCcccc-CCccccc-cCC-ccEEEc
Q 009079 61 KEDLRNLPLLTVLNVSHNKLS----E------------LPAAIGELHMLKSLDVSFNSIMK-IPDEIGS-ATA-LVKFDC 121 (544)
Q Consensus 61 ~~~~~~~~~L~~L~l~~~~~~----~------------l~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~-~~~-L~~L~l 121 (544)
+..+..+++|++|+++++... . ++.....+++|++|++++|.++. .+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 345566677777777654210 1 11122356777777777776552 2223333 333 777777
Q ss_pred CCCC-Cc--cCCcccccCcCCCEEEcCCCccccC-----CccccCCCCceEEEecCCcccccc----chhhcCccccceE
Q 009079 122 SSNQ-LK--ELPSSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTEL 189 (544)
Q Consensus 122 ~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L 189 (544)
++|. +. .++....++++|++|++++|.+... +.....+++|++|+++++.++.+. ...+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 6665 21 2222234567777777777765422 123345667777777777665222 2224556777777
Q ss_pred EcCCCcCCCCcccccCCCceeEEEccCCccc----cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcC
Q 009079 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265 (544)
Q Consensus 190 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 265 (544)
++++|.+..++..+..+++|++++++..... .....+..+++|+.+.+.++....++..+..+++|++|++++|.+
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 7777777667766777777777777643221 223445666777777777665556666666777777777777765
Q ss_pred cccchh---cccccccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccc
Q 009079 266 KEYCVE---ACQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (544)
Q Consensus 266 ~~~~~~---~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (544)
+..... ....+|+.|++++ .+.+ ++.....+++|++|++++..........
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~----------------------- 361 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE----------------------- 361 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST-----------------------
T ss_pred CHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccc-----------------------
Confidence 432221 1223466666652 2222 2333355666777766620000000000
Q ss_pred cccchhhhhhhhhcccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCC-CChhhh-cCCCCcEEEcc----C
Q 009079 341 ASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE-LPPELS-SCASLQTLILS----R 412 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~-~~~~L~~L~l~----~ 412 (544)
.+.++ .+......+++|++|+++.+.+++ .+..+. .+++|++|+++ .
T Consensus 362 -------------------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 362 -------------------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp -------------------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred -------------------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 00111 011112235677777776666665 222333 37778888885 4
Q ss_pred CCCCCC-----CHHHHhCCCCCCEEECCCCC--CCcCCCCc-cCCCCCcceEecCCcccCCCCCC-CCCCCccCceEeec
Q 009079 413 NKIKDW-----PDAILTSLSSLSCLKLDNNP--LRQVPSDG-FKDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLR 483 (544)
Q Consensus 413 ~~l~~~-----~~~~l~~~~~L~~L~l~~n~--i~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls 483 (544)
+.+++. ....+..+++|++|++++|. +++..... ...+++|++|++++|.+++.... .+..+++|+.|+++
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 466653 22335667888888886554 44321111 23477788888888876653322 23567888888888
Q ss_pred CCccc--ccCccccCCCCCCeeecCCCCCCC--CCcccccceeeeEeccCC
Q 009079 484 RMQLR--EAPTDILRLQQLRILDLSQNSLQS--IPEVTYIFVMLQKKSINT 530 (544)
Q Consensus 484 ~n~l~--~i~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~~~~L~~l~l~~ 530 (544)
+|.++ .++..+..+++|+.|++++|+++. +......+|.+....+..
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 88776 244444568888888888888773 233334566655544443
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.8e-26 Score=234.37 Aligned_cols=259 Identities=30% Similarity=0.369 Sum_probs=230.6
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~ 88 (544)
..+++++|+++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence 358999999999999997553 469999999999998886 67999999999999999986
Q ss_pred CCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEec
Q 009079 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 168 (544)
.+++|++|++++|.++.+|. .+++|+.|++++|+++.+|.. +++|++|++++|.+..++.. ..+|+.|+++
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~ 169 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAY 169 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECC
Confidence 78999999999999999887 678999999999999998864 48999999999999988753 5789999999
Q ss_pred CCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchh
Q 009079 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~ 248 (544)
+|.++.++ ..+++|+.|++++|.+..+|.. .++|+.|++++|.++.+|.. +++|+.|++++|.++.+|
T Consensus 170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence 99999887 4568999999999999988754 47899999999999988754 478999999999999988
Q ss_pred hhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCcc
Q 009079 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (544)
Q Consensus 249 l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~ 312 (544)
..+++|+.|++++|.++.++. ...+|+.|++++|.+..+|..+..+++|+.|++++|++..
T Consensus 238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 567899999999999999887 5567999999999999999999999999999999999864
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2e-29 Score=262.60 Aligned_cols=407 Identities=14% Similarity=0.095 Sum_probs=245.1
Q ss_pred CEEEcCCCCCCCcchhhhCCCCccEEEccCCcc-c---cCCcc------------ccccCCccEEEcCCCCCccC-Cccc
Q 009079 71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI-M---KIPDE------------IGSATALVKFDCSSNQLKEL-PSSL 133 (544)
Q Consensus 71 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l-~---~l~~~------------~~~~~~L~~L~l~~~~~~~~-~~~~ 133 (544)
+.+.+.++.-...+..+..+++|++|+++++.. . .+|.. ...+++|++|++++|.++.. +..+
T Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l 132 (592)
T 3ogk_B 53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132 (592)
T ss_dssp CEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred cEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence 345554432223344667889999999988632 1 12211 22677788888887766521 2233
Q ss_pred cc-CcC-CCEEEcCCCcc-c--cCCccccCCCCceEEEecCCcccccc----chhhcCccccceEEcCCCcCCC-----C
Q 009079 134 GR-CLN-LSDFKASNNCI-T--SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG-----M 199 (544)
Q Consensus 134 ~~-~~~-L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~ 199 (544)
.. +++ |++|++++|.. . .++.....+++|++|++++|.+++.. ......+++|++|+++++.+.. +
T Consensus 133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 33 333 77777777652 1 22222345677777777777655432 1224455666666666666542 2
Q ss_pred cccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC----cCchhhhCCCCCCEEECCCCcCcccchhcc-c
Q 009079 200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEAC-Q 274 (544)
Q Consensus 200 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~----~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~-~ 274 (544)
+..+..+++|+.|++++|.+..++..+..+++|+.++++..... ..+..+..+++|+.++++++....++.... .
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 23344556666666666666555555556666666666542211 222334455555555555543333332221 1
Q ss_pred ccccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009079 275 LRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (544)
Q Consensus 275 ~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (544)
.+|++|++++|.+.+ +...+..+++|++|++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~---------------------------------------------- 326 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR---------------------------------------------- 326 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE----------------------------------------------
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc----------------------------------------------
Confidence 235555555554332 11223444455554444
Q ss_pred hcccccceeeecCCCccC-CCchhhccCCCccEEEcCC-----------CCCCC--CChhhhcCCCCcEEEccCCCCCCC
Q 009079 353 TRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR-----------NSIQE--LPPELSSCASLQTLILSRNKIKDW 418 (544)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~-----------~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~ 418 (544)
++... .++.....+++|++|++++ +.++. ++.....+++|++|+++.+.+++.
T Consensus 327 -------------~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 327 -------------NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp -------------GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred -------------CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 11111 1222234478899999994 35554 333456799999999988898876
Q ss_pred CHHHHhC-CCCCCEEECC----CCCCCcCCCC-----ccCCCCCcceEecCCcc--cCCCCCCCCC-CCccCceEeecCC
Q 009079 419 PDAILTS-LSSLSCLKLD----NNPLRQVPSD-----GFKDIPMLQILDLSYNI--ASLPENPPFS-SLPHLQELYLRRM 485 (544)
Q Consensus 419 ~~~~l~~-~~~L~~L~l~----~n~i~~~~~~-----~l~~~~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~ls~n 485 (544)
....+.. +++|++|+++ .+.+++.+.. .+.++++|+.|+++.|. +++.....+. .+++|+.|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 5555555 9999999996 5667764321 25678999999997643 4443333333 3789999999999
Q ss_pred ccc--ccCccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccCCcccccc
Q 009079 486 QLR--EAPTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSINTELVDKN 536 (544)
Q Consensus 486 ~l~--~i~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~~n~~~~~ 536 (544)
.++ .++..+..+++|+.|++++|+++ .++.....+++|+.|++++|.+...
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 987 35555677999999999999987 3466567899999999999998754
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.4e-26 Score=219.77 Aligned_cols=241 Identities=26% Similarity=0.339 Sum_probs=213.8
Q ss_pred cCccEEecccCccc---chhHhhcCCCCCCEEEcCC-CCCC-CcchhhhCCCCccEEEccCCccc-cCCccccccCCccE
Q 009079 45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (544)
Q Consensus 45 ~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~ 118 (544)
.++++|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47999999999998 5889999999999999995 7776 77889999999999999999998 77888999999999
Q ss_pred EEcCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCC-CceEEEecCCccccccchhhcCccccceEEcCCCc
Q 009079 119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (544)
Q Consensus 119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (544)
|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..++ +|++|++++|.++......+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 78888999999999999999998 7888899888 999999999999866666688777 9999999999
Q ss_pred CC-CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCc-ccchhc
Q 009079 196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA 272 (544)
Q Consensus 196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~-~~~~~~ 272 (544)
+. ..+..+..+++|+.|++++|.++..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++ .++...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 86 4577889999999999999999866666888999999999999998 78999999999999999999998 455554
Q ss_pred ccccccEEEccCCC
Q 009079 273 CQLRLSVLDLSNNS 286 (544)
Q Consensus 273 ~~~~L~~L~l~~~~ 286 (544)
...+|+.+++.+|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 44558889998886
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3e-29 Score=261.40 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=44.8
Q ss_pred hhcCCCCcEEEccCCCCCCCCHHHHhC-CCCCCEEECCCCCCCcCCCCcc-CCCCCcceEecCCcccCCCCCC-CCCCCc
Q 009079 399 LSSCASLQTLILSRNKIKDWPDAILTS-LSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENP-PFSSLP 475 (544)
Q Consensus 399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~L~l~~n~i~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~-~~~~l~ 475 (544)
+..+++|++|++++ .+++.....+.. +++|++|++++|.+++.....+ .++++|+.|++++|.+++.... ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 44556666666655 444433333333 5666666666666544322222 3455666666666655333222 123355
Q ss_pred cCceEeecCCccc
Q 009079 476 HLQELYLRRMQLR 488 (544)
Q Consensus 476 ~L~~L~ls~n~l~ 488 (544)
+|+.|++++|.++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 6666666666553
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.1e-26 Score=220.48 Aligned_cols=265 Identities=21% Similarity=0.297 Sum_probs=172.7
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcc-hhh
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AAI 87 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~ 87 (544)
....+|++++.++.+|..++ ++|++|+++++.++.++. .+.++++|++|++++|.++.++ .++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCeEeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 34457777777777776543 347777777777776654 6777777777777777777653 467
Q ss_pred hCCCCccEEEccCCccccCCcc-ccccCCccEEEcCCCCCccCCc--ccccCcCCCEEEcCCC-ccccC-CccccCCCCc
Q 009079 88 GELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSKM 162 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L 162 (544)
.++++|++|++++|.++.++.. +..+++|++|++++|+++.++. .+..+++|++|++++| .+..+ +..+.++++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 7777777777777777777655 6777777777777777777665 5667777777777777 35544 3456677777
Q ss_pred eEEEecCCccccccchhhcCccccceEEcCCCcCCCCccc-ccCCCceeEEEccCCccccCCcC----CccCCCCCEEEc
Q 009079 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPSS----ISGCCSLAEFYM 237 (544)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~l~l 237 (544)
++|++++|.++.+....+..+++|++|++++|.+..++.. +..+++|+.|++++|.++.++.. ......++.+++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 7777777777766666677777777777777777666543 33466777777777766644211 122344555555
Q ss_pred cCCcCC-----cCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCcc-ccCCCCcceeccCCCCCc
Q 009079 238 GNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLR 311 (544)
Q Consensus 238 ~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~ 311 (544)
+++.+. .+|..+..+++|+.|++++|.++ .+|.. +..+++|+++++++|++.
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~----------------------~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK----------------------SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCC----------------------ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 555544 24444555555555555555554 44444 366777777777777653
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.5e-26 Score=217.12 Aligned_cols=240 Identities=22% Similarity=0.321 Sum_probs=206.8
Q ss_pred CCCCEEEcCCCCCC---CcchhhhCCCCccEEEccC-Cccc-cCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCE
Q 009079 68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD 141 (544)
Q Consensus 68 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~ 141 (544)
.++++|+++++.+. .+|.++.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999988 4788999999999999995 7777 67888999999999999999998 78888999999999
Q ss_pred EEcCCCccc-cCCccccCCCCceEEEecCCccccccchhhcCcc-ccceEEcCCCcCC-CCcccccCCCceeEEEccCCc
Q 009079 142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR 218 (544)
Q Consensus 142 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 218 (544)
|++++|.+. .+|..+..+++|++|++++|.++......+..++ .|++|++++|.+. .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 7788899999999999999999855455577777 8999999999986 6778888887 9999999999
Q ss_pred cc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcc-cchhccc-ccccEEEccCCCCCC-CCccc
Q 009079 219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE-YCVEACQ-LRLSVLDLSNNSLSG-LPPEI 294 (544)
Q Consensus 219 ~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~-~~L~~L~l~~~~l~~-l~~~l 294 (544)
++ ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+++ ++..... .+|++|++++|.+++ +|. .
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C
Confidence 88 45677889999999999999998665668889999999999999984 4443332 459999999999986 555 4
Q ss_pred cCCCCcceeccCCCC
Q 009079 295 GKMTTLRKLLLTGNP 309 (544)
Q Consensus 295 ~~~~~L~~L~l~~~~ 309 (544)
..+++|+.+++.+|+
T Consensus 288 ~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccccccChHHhcCCC
Confidence 888999999999997
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.2e-25 Score=213.51 Aligned_cols=240 Identities=23% Similarity=0.271 Sum_probs=158.0
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc---chhh
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI 87 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l---~~~~ 87 (544)
+.+++++++++.+|.... +++++|+++++.++.+|. .+.++++|++|++++|.++.+ +.++
T Consensus 10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 567888888888876443 358888888888887765 467888888888888877744 4566
Q ss_pred hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCc--ccccCcCCCEEEcCCCccccC-CccccCCCCceE
Q 009079 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSK 164 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~ 164 (544)
..+++|++|++++|.++.++..+..+++|++|++++|.++.++. .+..+++|++|++++|.+... +..+..+++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 67788888888888877777777778888888888887776653 566777777777777776633 344566677777
Q ss_pred EEecCCcccc-ccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCc
Q 009079 165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA 241 (544)
Q Consensus 165 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~ 241 (544)
|++++|.++. .....+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 7777776654 3333455666666666666666544 3455556666666666666655433 34555566666666665
Q ss_pred CCcC-chhhhCCC-CCCEEECCCCcCc
Q 009079 242 LSAL-PAELGKLS-KLGTLDLHSNQLK 266 (544)
Q Consensus 242 ~~~l-~~~l~~~~-~L~~L~l~~~~i~ 266 (544)
+... +..+..++ +|+.|++++|.+.
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CcccCHHHHHhhhccCCEEEccCCCee
Confidence 5532 33444442 5555555555544
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.3e-25 Score=214.54 Aligned_cols=223 Identities=21% Similarity=0.273 Sum_probs=181.4
Q ss_pred cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 124 (544)
.+++.|+++++.+..+|..+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 57888888888888888888888888888888888888888888888888888888888888888888888888888886
Q ss_pred CC-ccCCcccc---------cCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCC
Q 009079 125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (544)
Q Consensus 125 ~~-~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (544)
++ ..+|..++ .+++|++|++++|.+..+|..+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence 54 46665544 38888888888888888888888888888888888888877664 778888888888887
Q ss_pred cC-CCCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCccc
Q 009079 195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY 268 (544)
Q Consensus 195 ~~-~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~~~ 268 (544)
.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++++.+++..+.+..+
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 66 456777888888888888887655 67777888888888888887655 7788888888888888877665443
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=7.6e-26 Score=216.06 Aligned_cols=224 Identities=21% Similarity=0.314 Sum_probs=202.2
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~ 88 (544)
..+++|+++++.++.+|..++. +++|++|++++|.+..+|..+.++++|++|++++|.++.+|..+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 6899999999999999977665 578999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEccCCcc-ccCCcccc---------ccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccC
Q 009079 89 ELHMLKSLDVSFNSI-MKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l-~~l~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 158 (544)
++++|++|++++|.+ +.+|..+. .+++|++|++++|.++.+|..++.+++|++|++++|.+..++..+..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 999999999999754 46776655 49999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEecCCccccccchhhcCccccceEEcCCCcC-CCCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEE
Q 009079 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY 236 (544)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~ 236 (544)
+++|++|++++|.+.......+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++++.+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 99999999999988876666799999999999999876 567888999999999999998766 7899999999999999
Q ss_pred ccCCcCCcC
Q 009079 237 MGNNALSAL 245 (544)
Q Consensus 237 l~~~~~~~l 245 (544)
+..+.+..+
T Consensus 308 l~~~~~~~l 316 (328)
T 4fcg_A 308 VPPHLQAQL 316 (328)
T ss_dssp CCGGGSCC-
T ss_pred CCHHHHHHH
Confidence 997766544
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.6e-26 Score=222.47 Aligned_cols=274 Identities=20% Similarity=0.273 Sum_probs=173.1
Q ss_pred ccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEEC
Q 009079 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDL 260 (544)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l 260 (544)
|+.....+.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.+..+ +..+.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3444556777777777776554 478888888888776655 677778888888888877755 445777788888888
Q ss_pred CCCcCcccchhcc--cccccEEEccCCCCCCCCc--cccCCCCcceeccCCCC-CccccccccCCCchHHHHHHhhcCCC
Q 009079 261 HSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPE 335 (544)
Q Consensus 261 ~~~~i~~~~~~~~--~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (544)
++|.++.++...+ ..+|++|++++|.+..++. .+..+++|++|++++|. +..++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------- 166 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--------------------- 166 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---------------------
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC---------------------
Confidence 8877777665432 2346777777776666554 45666666666666652 32211
Q ss_pred CCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCC
Q 009079 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNK 414 (544)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~ 414 (544)
+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 167 -------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 167 -------------------------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp -------------------------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred -------------------------------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 12334456777777777777663 5567777777777777777
Q ss_pred CCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc-----c
Q 009079 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-----E 489 (544)
Q Consensus 415 l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-----~ 489 (544)
++.++...+..+++|+.|++++|++.++....+.. ....+.++.++++++.+. .
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cccchhhhhhhcccccEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhh
Confidence 77666665666777777777777776644322211 111233444444444433 3
Q ss_pred cCccccCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCccccccc
Q 009079 490 APTDILRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 490 i~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~ 537 (544)
+|..+..+++|+.|++++|+++.+|+. +..+++|+.|++++|++.+++
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 555566666677777777766666554 356666777777777666554
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.4e-25 Score=212.99 Aligned_cols=242 Identities=24% Similarity=0.280 Sum_probs=147.8
Q ss_pred ceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC-CccCCCCCEEEccCCcCCcC---chhhhCCCCCCEEECCC
Q 009079 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHS 262 (544)
Q Consensus 187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~l~l~~~~~~~l---~~~l~~~~~L~~L~l~~ 262 (544)
+.++.+++.++.+|..+. +++++|++++|.++.++.. +..+++|+.|++++|.+..+ +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 455666666666665432 4667777777776666543 46666777777777766633 45555666777777776
Q ss_pred CcCcccchhccc-ccccEEEccCCCCCCCCc--cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079 263 NQLKEYCVEACQ-LRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (544)
Q Consensus 263 ~~i~~~~~~~~~-~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (544)
|.+..++..... .+|++|++++|.+..++. .+..+++|++|++++|.+...
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------- 141 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------------------------- 141 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC--------------------------
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc--------------------------
Confidence 666554433221 225555555555544432 355555555555555544221
Q ss_pred ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC--CChhhhcCCCCcEEEccCCCCCC
Q 009079 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKD 417 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~ 417 (544)
.+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+++
T Consensus 142 --------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 142 --------------------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp --------------------------------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred --------------------------------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence 12223345667777777776654 56666667777777777777776
Q ss_pred CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCc-cCceEeecCCccc
Q 009079 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP-HLQELYLRRMQLR 488 (544)
Q Consensus 418 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~ 488 (544)
+.+..+..+++|++|++++|++.+++...+..+++|+.|++++|.++...+..+..++ +|+.|++++|.++
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 6555566677777777777777766655566677777777777777666666666663 6777777777665
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=216.07 Aligned_cols=243 Identities=22% Similarity=0.346 Sum_probs=149.7
Q ss_pred eeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCc-hhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCC
Q 009079 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN 285 (544)
Q Consensus 209 L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~ 285 (544)
...++.++..++.+|..+. ++++.|++++|.+..++ ..+.++++|+.|++++|.+..+....+. .+|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4567777777777777653 67888888888887553 5677788888888888877766544333 33666666666
Q ss_pred CCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079 286 SLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (544)
Q Consensus 286 ~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (544)
.+..++. .+..+++|++|++++|.+..++..
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------------------------------ 154 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSY------------------------------------------------ 154 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTT------------------------------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHH------------------------------------------------
Confidence 6666544 355566666666666555433211
Q ss_pred CCCccCCCchhhccCCCccEEEcCCC-CCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcC
Q 009079 365 EGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442 (544)
Q Consensus 365 ~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~ 442 (544)
.+..+++|+.|++++| .++.++. .+..+++|++|++++|.++.++. +..+++|++|++++|++..+
T Consensus 155 ----------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 155 ----------AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp ----------TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEE
T ss_pred ----------HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCcc
Confidence 2223456666666663 3444433 35566666666666666665543 45566666666666666665
Q ss_pred CCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCC
Q 009079 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 443 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l 513 (544)
....|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|.. +..+++|+.|++++|++.+-
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 555566666666666666666666666666666666666666666655433 33466666666666666543
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.6e-28 Score=253.32 Aligned_cols=434 Identities=15% Similarity=0.138 Sum_probs=259.5
Q ss_pred ccEEecccCcccchhHhhcCCCCCCEEEcCCCC-CCCc---------------chhhhCCCCccEEEccCCcccc-CCcc
Q 009079 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-LSEL---------------PAAIGELHMLKSLDVSFNSIMK-IPDE 109 (544)
Q Consensus 47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~~l---------------~~~~~~~~~L~~L~l~~~~l~~-l~~~ 109 (544)
.+.++++.+........+..+++|++|+++++. +.++ +.....+++|++|++++|.++. .+..
T Consensus 45 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 45 RRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred ceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 345666665444444567788999999998864 2111 1223567889999999887763 2333
Q ss_pred cc-ccCCccEEEcCCC-CCcc--CCcccccCcCCCEEEcCCCcccc-----CCccccCCCCceEEEecCCccccccch--
Q 009079 110 IG-SATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNN-- 178 (544)
Q Consensus 110 ~~-~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 178 (544)
+. .+++|++|++++| .++. ++....++++|++|++++|.+.. ++.....+++|++|+++++. ..+...
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence 43 6888999999888 4543 44445578888889888887653 22333467788888888775 222211
Q ss_pred --hhcCccccceEEcCCC-cCCCCcccccCCCceeEEEccCCc-------cccCCcCCccCCCCCEE-EccCCcCCcCch
Q 009079 179 --LIASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQNR-------ILSIPSSISGCCSLAEF-YMGNNALSALPA 247 (544)
Q Consensus 179 --~~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~l~~~~~~~~~L~~l-~l~~~~~~~l~~ 247 (544)
....+++|++|++++| .+..++..+..+++|+.|+++.+. +..++..+..+++|+.+ .+.+.....++.
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 1334577888888777 334455666677777777765442 12333345566666666 333333334444
Q ss_pred hhhCCCCCCEEECCCCcCcccchhc---ccccccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCc
Q 009079 248 ELGKLSKLGTLDLHSNQLKEYCVEA---CQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (544)
Q Consensus 248 ~l~~~~~L~~L~l~~~~i~~~~~~~---~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (544)
.+..+++|++|++++|.++...... ..++|++|++++| +.+ ++.....+++|++|++.++....
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------- 352 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------- 352 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC----------
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc----------
Confidence 4455666666666666644321111 1123555555444 211 11112234444444443321000
Q ss_pred hHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCCC-Chhh
Q 009079 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQEL-PPEL 399 (544)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~ 399 (544)
....+.++ .+......+++|+.|.+..+.++.. ...+
T Consensus 353 ----------------------------------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l 392 (594)
T 2p1m_B 353 ----------------------------------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392 (594)
T ss_dssp ----------------------------------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred ----------------------------------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence 00111111 0111122378899998888888762 2233
Q ss_pred -hcCCCCcEEEcc--C----CCCCCCCH-----HHHhCCCCCCEEECCCCCCCcCCCCccC-CCCCcceEecCCcccCCC
Q 009079 400 -SSCASLQTLILS--R----NKIKDWPD-----AILTSLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLSYNIASLP 466 (544)
Q Consensus 400 -~~~~~L~~L~l~--~----~~l~~~~~-----~~l~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~l~~~ 466 (544)
..+++|++|+++ + +.+++.+. ..+..+++|++|++++ .+++.....+. .+++|+.|++++|.+++.
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 468999999999 3 46664321 2367789999999977 66653333333 388999999999988766
Q ss_pred CCCCC-CCCccCceEeecCCcccc--cCccccCCCCCCeeecCCCCCCC--CCcccccceeeeEeccCCccc
Q 009079 467 ENPPF-SSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS--IPEVTYIFVMLQKKSINTELV 533 (544)
Q Consensus 467 ~~~~~-~~l~~L~~L~ls~n~l~~--i~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~~~~L~~l~l~~n~~ 533 (544)
+...+ ..+++|+.|++++|.++. +...+..+++|+.|++++|+++. +......+|.|+...+.++..
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 55444 568999999999998862 23344568999999999999862 222225667777766666543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.9e-24 Score=216.53 Aligned_cols=245 Identities=24% Similarity=0.348 Sum_probs=150.6
Q ss_pred eeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCC
Q 009079 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN 285 (544)
Q Consensus 209 L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~ 285 (544)
...++.++..++.+|..+. ++++.|++++|.+..+ +..+.++++|+.|++++|.+..++...+. .+|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777777777776553 5788888888887755 55677788888888888877766544332 23666666666
Q ss_pred CCCCCCcc-ccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079 286 SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (544)
Q Consensus 286 ~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (544)
.+..++.. +..+++|++|++++|.+..++..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------------------------------ 165 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY------------------------------------------------ 165 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTT------------------------------------------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHh------------------------------------------------
Confidence 66654433 55556666666666555433211
Q ss_pred CCCccCCCchhhccCCCccEEEcCCC-CCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcC
Q 009079 365 EGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442 (544)
Q Consensus 365 ~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~ 442 (544)
.+..+++|+.|++++| .++.++. .+..+++|++|++++|.+++++. +..+++|++|++++|++.++
T Consensus 166 ----------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 166 ----------AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp ----------TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEE
T ss_pred ----------HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcCccc
Confidence 2223556666666663 3444443 35666666666666666665542 45666666666666666666
Q ss_pred CCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 443 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~ 515 (544)
....|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|.. +..+++|+.|++++|++.+-.+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 555566666666666666666666666666666666666666666655433 3446666666666666664433
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.1e-24 Score=202.54 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=124.4
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCc-chhhhC
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (544)
+++++++++++.+|.... +++++|+++++.+..++ ..+.++++|++|++++|.++.+ +.++..
T Consensus 14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCTTCC---------------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eEEEcCcCCcccCCcCCC---------------CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 445666665665554332 24566666666555444 2455555666666665555544 345555
Q ss_pred CCCccEEEccCCc-cccC-CccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEe
Q 009079 90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (544)
Q Consensus 90 ~~~L~~L~l~~~~-l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 167 (544)
+++|++|++++|. ++.+ +..+..+++|++|++++|.++.++ +..+..+++|++|++
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLAALQYLYL 136 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC----------------------TTTTTTCTTCCEEEC
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC----------------------HhHhhCCcCCCEEEC
Confidence 5555555555554 5544 334555555555555555555432 223444445555555
Q ss_pred cCCccccccchhhcCccccceEEcCCCcCCCCcc-cccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC
Q 009079 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL 245 (544)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l 245 (544)
++|.++.++...+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..+
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 5555544444445555555555555555554443 355666677777776666644 55666677777777777777766
Q ss_pred c-hhhhCCCCCCEEECCCCcCc
Q 009079 246 P-AELGKLSKLGTLDLHSNQLK 266 (544)
Q Consensus 246 ~-~~l~~~~~L~~L~l~~~~i~ 266 (544)
+ ..+..+++|+.|++++|.+.
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHcccCcccCEEeccCCCcc
Confidence 5 34677777888888777765
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.1e-25 Score=213.77 Aligned_cols=198 Identities=17% Similarity=0.150 Sum_probs=86.4
Q ss_pred CCCCccEEEccCCccc-cCCccc--cccCCccEEEcCCCCCccCCcccccC-----cCCCEEEcCCCccccCC-ccccCC
Q 009079 89 ELHMLKSLDVSFNSIM-KIPDEI--GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADC 159 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~-~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~ 159 (544)
++++|++|++++|.++ .+|..+ ..+++|++|++++|+++.+|..++.+ ++|++|++++|.+..++ ..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3444444444444444 233332 44444444444444444444333333 44444444444444333 334444
Q ss_pred CCceEEEecCCccccc----cchhhcCccccceEEcCCCcCCCCc----ccccCCCceeEEEccCCccccCC--cCCccC
Q 009079 160 SKMSKLDVEGNKLTVL----SNNLIASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIP--SSISGC 229 (544)
Q Consensus 160 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~l~--~~~~~~ 229 (544)
++|++|++++|.+... ....+..+++|++|++++|.++.++ ..+..+++|++|++++|.++..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 4444444444443221 0111244444555555554444222 11233444555555555444322 223334
Q ss_pred CCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCC
Q 009079 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288 (544)
Q Consensus 230 ~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~ 288 (544)
++|+.|++++|.++.+|..+. ++|+.|++++|++++++......+|++|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred CCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence 455555555555554444333 445555555555554433222233555555555443
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.3e-24 Score=202.19 Aligned_cols=242 Identities=26% Similarity=0.348 Sum_probs=162.0
Q ss_pred CEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCCCC-CccccCCCCcceeccCCCC
Q 009079 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNP 309 (544)
Q Consensus 233 ~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~ 309 (544)
+.++.+++.+..+|.. ..+++++|++++|.++.++...+. .+|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4566666666666643 245677777777666665543222 2356666665555553 3345555555555555554
Q ss_pred -CccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcC
Q 009079 310 -LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388 (544)
Q Consensus 310 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~ 388 (544)
+..+ .+..+..+++|++|+++
T Consensus 92 ~l~~~----------------------------------------------------------~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 92 QLRSV----------------------------------------------------------DPATFHGLGRLHTLHLD 113 (285)
T ss_dssp TCCCC----------------------------------------------------------CTTTTTTCTTCCEEECT
T ss_pred Ccccc----------------------------------------------------------CHHHhcCCcCCCEEECC
Confidence 3221 12344456778888888
Q ss_pred CCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC
Q 009079 389 RNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467 (544)
Q Consensus 389 ~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 467 (544)
+|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|++++|+++.++...+..+++|+.|++++|.++.+.
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 8887775 445677788888888888887777766777888888888888887777666777888888888888887777
Q ss_pred CCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcccc
Q 009079 468 NPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVD 534 (544)
Q Consensus 468 ~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~ 534 (544)
+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|++..-.+..+...+++.+..+.+.+.
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~ 261 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCB
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccc
Confidence 77778888888888888887776643 56678888888888887755444455566666666655554
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=6.9e-24 Score=211.74 Aligned_cols=242 Identities=23% Similarity=0.337 Sum_probs=205.4
Q ss_pred cceEEcCCCcCCCCcccccCCCceeEEEccCCccccCC-cCCccCCCCCEEEccCCcCCcCc-hhhhCCCCCCEEECCCC
Q 009079 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN 263 (544)
Q Consensus 186 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~l~l~~~~~~~l~-~~l~~~~~L~~L~l~~~ 263 (544)
.+.++..+..++.+|..+. +.++.|++++|.+..++ ..+..+++|+.|++++|.+..++ ..+.++++|+.|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5678888888888887664 68899999999999764 67889999999999999999764 67889999999999999
Q ss_pred cCcccchhccc--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCC-CccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079 264 QLKEYCVEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (544)
Q Consensus 264 ~i~~~~~~~~~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (544)
.++.++...+. .+|++|++++|.+..++. .+..+++|++|++++|. +..++.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------------------ 178 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE------------------------ 178 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc------------------------
Confidence 99988775443 459999999999988655 58889999999998854 322211
Q ss_pred ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCC
Q 009079 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~ 419 (544)
..+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+.
T Consensus 179 ----------------------------------~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 179 ----------------------------------GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp ----------------------------------TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEEC
T ss_pred ----------------------------------chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccC
Confidence 134447789999999999999874 788999999999999999988
Q ss_pred HHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 420 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
+..|..+++|+.|++++|++..+....|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.+.
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888899999999999999999988888999999999999999999999998999999999999998765
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-24 Score=206.12 Aligned_cols=236 Identities=21% Similarity=0.280 Sum_probs=136.3
Q ss_pred cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhC
Q 009079 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (544)
Q Consensus 11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (544)
++..+++.+.+...+..++.. +++|++|++++|.++.++ ..+.++++|++|++++|.++.++. +..
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 78 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES 78 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred eeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence 445556666555555555443 345777777777776543 466777777777777777665543 666
Q ss_pred CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCc-cccCCCCceEEEec
Q 009079 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVE 168 (544)
Q Consensus 90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 168 (544)
+++|++|++++|.++.++ ..++|++|++++|.++.++. ..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 79 l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 677777777777666543 23666777776666665542 224556666666666665432 44555666666666
Q ss_pred CCccccccchhh-cCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCch
Q 009079 169 GNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (544)
Q Consensus 169 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~ 247 (544)
+|.++.+....+ ..+++|++|++++|.++.++. ...+++|++|++++|.++.++..+..+++|+.|++++|.+..+|.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 666655443333 245556666666665555432 223555555555555555555555555555555555555555555
Q ss_pred hhhCCCCCCEEECCCCcCc
Q 009079 248 ELGKLSKLGTLDLHSNQLK 266 (544)
Q Consensus 248 ~l~~~~~L~~L~l~~~~i~ 266 (544)
.+..+++|+.|++++|.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCCCCTTCCEEECTTCCCB
T ss_pred HhhcCCCCCEEEccCCCcc
Confidence 5555555555555555554
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=3.6e-23 Score=207.36 Aligned_cols=240 Identities=24% Similarity=0.307 Sum_probs=147.2
Q ss_pred eEEcCCCcCCCCcccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcC
Q 009079 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQL 265 (544)
Q Consensus 188 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i 265 (544)
.++..+..++.+|..+. ++++.|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+.++++|+.|++++|.+
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 33444444444443332 3455555555555533 33445555555555555555533 23455555555555555555
Q ss_pred cccchhccc--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCC-CccccccccCCCchHHHHHHhhcCCCCCcccc
Q 009079 266 KEYCVEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 341 (544)
Q Consensus 266 ~~~~~~~~~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (544)
+.++...+. .+|++|++++|.+..++. .+..+++|++|++++|. +..++.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-------------------------- 189 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-------------------------- 189 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT--------------------------
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh--------------------------
Confidence 555443322 235555555555555443 46677788888887743 322211
Q ss_pred ccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHH
Q 009079 342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421 (544)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~ 421 (544)
..+..+++|++|++++|.++.+| .+..+++|++|++++|.++++.+.
T Consensus 190 --------------------------------~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 190 --------------------------------GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp --------------------------------TTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred --------------------------------hhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcc
Confidence 12333567777777777777765 366777777888877777777777
Q ss_pred HHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 422 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
.|..+++|+.|++++|++..+....|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.+.
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7777778888888877777776666777777888888887777777777777777888887777544
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2e-24 Score=205.69 Aligned_cols=255 Identities=18% Similarity=0.180 Sum_probs=211.8
Q ss_pred CccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcc-hhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079 46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 123 (544)
.++..+++.+.+.+.+ ..+..+++|++|++++|.++.++ .++..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 3666677777777554 45667789999999999999775 589999999999999999987654 88999999999999
Q ss_pred CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc-cc
Q 009079 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ET 202 (544)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 202 (544)
|.++.++ ..++|++|++++|.+..++.. .+++|++|++++|.++.+....+..+++|++|++++|.+..++ ..
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred Ccccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 9988765 348999999999999877543 4688999999999999988878899999999999999998753 34
Q ss_pred c-cCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhccc-ccccEE
Q 009079 203 I-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVL 280 (544)
Q Consensus 203 l-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-~~L~~L 280 (544)
+ ..+++|++|++++|.++.++.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.++.++..... .+|+.|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence 4 4789999999999999877443 358899999999999998888889999999999999999987765433 348899
Q ss_pred EccCCCCC--CCCccccCCCCcceeccCCC
Q 009079 281 DLSNNSLS--GLPPEIGKMTTLRKLLLTGN 308 (544)
Q Consensus 281 ~l~~~~l~--~l~~~l~~~~~L~~L~l~~~ 308 (544)
++++|.+. .++..+..++.|+.+++.++
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCc
Confidence 99988887 26666777888888777643
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.1e-24 Score=207.04 Aligned_cols=240 Identities=16% Similarity=0.172 Sum_probs=134.5
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCccc--chhHhhc-------CCCCCCEEEcCCCC
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLR-------NLPLLTVLNVSHNK 79 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~-------~~~~L~~L~l~~~~ 79 (544)
+.+++++++++.+ .+|..+... +++|+++++.+. .++..+. ++++|++|++++|.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~---------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI---------------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH---------------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred CCceeEeeccccc-ccHHHHHHH---------------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 4455556666655 555555432 555566665553 2333333 55666666666666
Q ss_pred CC-Ccchhh--hCCCCccEEEccCCccccCCcccccc-----CCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccc
Q 009079 80 LS-ELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSA-----TALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT 150 (544)
Q Consensus 80 ~~-~l~~~~--~~~~~L~~L~l~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 150 (544)
++ .+|..+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|+++.++ ..++.+++|++|++++|.+.
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 65 344443 55666666666666666555555554 56666666666666554 45556666666666666543
Q ss_pred c---CCccc--cCCCCceEEEecCCccc---cccchhhcCccccceEEcCCCcCCCCc--ccccCCCceeEEEccCCccc
Q 009079 151 S---LPEDL--ADCSKMSKLDVEGNKLT---VLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRIL 220 (544)
Q Consensus 151 ~---~~~~~--~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~ 220 (544)
. ++..+ ..+++|++|++++|.++ .+....+..+++|++|++++|.+...+ ..+..+++|++|++++|.++
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 2 12222 55566666666666655 222233445566666666666665432 33444556666666666666
Q ss_pred cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcc
Q 009079 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267 (544)
Q Consensus 221 ~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 267 (544)
.+|..+. ++|+.|++++|.++.+|. +..+++|+.|++++|.+++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 5555444 566666666666665554 5566666666666665543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=188.88 Aligned_cols=134 Identities=28% Similarity=0.436 Sum_probs=84.7
Q ss_pred CCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079 379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 457 (544)
+++|++|++++|.++.++.. +..+++|++|++++|.++.+++..|..+++|++|++++|++..++...+..+++|+.|+
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 45666666666666665433 45666666666666666666655566666666666666666666655566666666666
Q ss_pred cCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCC
Q 009079 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQS 512 (544)
Q Consensus 458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~ 512 (544)
+++|.++.+.+..|..+++|+.|++++|.++.+|.. +..+++|+.|++++|++..
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 666666666666666666666666666666655443 4446666666666666653
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.5e-24 Score=216.71 Aligned_cols=148 Identities=23% Similarity=0.166 Sum_probs=115.4
Q ss_pred CCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHh-CCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079 379 AGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 456 (544)
+++|+.|++++|.++.+ |..+..+++|+.|++++|.++...+..+. .+++|++|++++|.+++++. ...+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEE
Confidence 34677777777777774 44577788888888888888876555554 67888888888888887744 3457888888
Q ss_pred ecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccC
Q 009079 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSIN 529 (544)
Q Consensus 457 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~ 529 (544)
++++|.++.+.+. +..+++|+.|++++|.++.+|..+..+++|+.|++++|++. .+|..+..++.|+.++++
T Consensus 197 ~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8888888876654 77788888888888888888888888888888888888888 567777888888888875
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.6e-23 Score=192.39 Aligned_cols=204 Identities=24% Similarity=0.240 Sum_probs=166.5
Q ss_pred hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHH
Q 009079 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (544)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (544)
..+++++++++++++++.++.... ..++.|++++|.+..+ +..+..+++|++|++++|.+..++.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV------------- 72 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------------
T ss_pred cccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------------
Confidence 455666666666666666654432 4567777777777664 3457888889999998887754421
Q ss_pred HhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEE
Q 009079 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408 (544)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 408 (544)
. ..+++|++|++++|.++.+|..+..+++|++|
T Consensus 73 ----------------------------------------------~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 73 ----------------------------------------------D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp ----------------------------------------------C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred ----------------------------------------------C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 1 23568999999999999988888889999999
Q ss_pred EccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 409 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
++++|.++.+++..|..+++|++|++++|++..++...|..+++|+.|++++|+++.+....|..+++|+.|++++|.++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 99999999988888899999999999999999988888889999999999999999988888899999999999999999
Q ss_pred ccCccccCCCCCCeeecCCCCCCCCC
Q 009079 489 EAPTDILRLQQLRILDLSQNSLQSIP 514 (544)
Q Consensus 489 ~i~~~~~~~~~L~~L~l~~n~l~~l~ 514 (544)
.+|..+...++|+.+++++|++.+-.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ccChhhcccccCCeEEeCCCCccCcC
Confidence 99999888999999999999987543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1e-22 Score=190.05 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=162.7
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcch-hhhC
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~ 89 (544)
.++++++..++.+|..+. +++++|+++++.+..++. .+.++++|++|++++|.++.++. ++.+
T Consensus 10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 467888888888886553 359999999999987765 78899999999999999987755 7888
Q ss_pred CCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCcccc--CCccccCCCCceEE
Q 009079 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (544)
Q Consensus 90 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L 165 (544)
+++|++|++++|.++.++ ..+..+++|++|++++|.+..++. .++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 999999999999988765 568899999999999999887765 57888999999999998875 57778888889999
Q ss_pred EecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC-CccCCCCCEEEccCC
Q 009079 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN 240 (544)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~l~l~~~ 240 (544)
++++|.++.+....+..+++++ ++++++|.+..++.......+|+.|++++|.++.++.. +..+++|+.+++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9988888877766666666665 56666666655544444444566666666655554432 344455555555554
Q ss_pred cCC
Q 009079 241 ALS 243 (544)
Q Consensus 241 ~~~ 243 (544)
.+.
T Consensus 235 ~~~ 237 (276)
T 2z62_A 235 PWD 237 (276)
T ss_dssp CBC
T ss_pred ccc
Confidence 443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4.6e-23 Score=192.37 Aligned_cols=159 Identities=23% Similarity=0.269 Sum_probs=73.7
Q ss_pred CCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCC-CCccCCCCCcceE
Q 009079 379 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQIL 456 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~L 456 (544)
+++|++|++++|.++.++ ..+..+++|++|++++|.++.+....+..+++|++|++++|++..+. ...+..+++|+.|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 334444444444444432 23444444555555444444443333444445555555555444422 2334444455555
Q ss_pred ecCCcccCCCCCCCCCCCccCc----eEeecCCcccccCccccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCc
Q 009079 457 DLSYNIASLPENPPFSSLPHLQ----ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTE 531 (544)
Q Consensus 457 ~l~~n~l~~~~~~~~~~l~~L~----~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n 531 (544)
++++|.++.+.+..+..+++|+ .|++++|.++.++.......+|+.|++++|+++.+|. .+..+++|+.|++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 5555544444444444444443 4555555555444444444445555555555554432 2344555555555555
Q ss_pred cccccc
Q 009079 532 LVDKNQ 537 (544)
Q Consensus 532 ~~~~~~ 537 (544)
++.+++
T Consensus 235 ~~~c~c 240 (276)
T 2z62_A 235 PWDCSC 240 (276)
T ss_dssp CBCCCT
T ss_pred cccccC
Confidence 555443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.6e-22 Score=189.37 Aligned_cols=178 Identities=25% Similarity=0.276 Sum_probs=156.2
Q ss_pred ceeeecCCCccCCC-chhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079 359 SKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (544)
Q Consensus 359 l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 437 (544)
++.++++++.+..+ +..+..+++|+.|++++|.++.++.. ..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN 110 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCch-hhccCCCCCEEECCCC
Confidence 44455555555533 23566688999999999999987654 789999999999999998765 4688999999999999
Q ss_pred CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCCCcc
Q 009079 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIPEV 516 (544)
Q Consensus 438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l~~~ 516 (544)
+++.++...|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.++.+|... ..+++|+.|++++|+++.+|..
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 999998888999999999999999999999999999999999999999999998765 5699999999999999999999
Q ss_pred cccceeeeEeccCCcccccccc
Q 009079 517 TYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 517 l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
+...+.|+.+++++|++.++++
T Consensus 191 ~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTTCCCSEEECCSCCBCCSGG
T ss_pred hcccccCCeEEeCCCCccCcCc
Confidence 9999999999999999998764
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1e-22 Score=205.05 Aligned_cols=215 Identities=22% Similarity=0.283 Sum_probs=125.9
Q ss_pred ecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcC
Q 009079 44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 122 (544)
+++|++|++++|.+..++ ..|..+++|++|++++|.++.++. +..+++|++|++++|.++.++. .++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 345666666666666443 466666666666666666664433 6666666666666666665442 2566666666
Q ss_pred CCCCccCCcccccCcCCCEEEcCCCccccC-CccccCCCCceEEEecCCccccccchhhc-CccccceEEcCCCcCCCCc
Q 009079 123 SNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIA-SWTMLTELIASKNLLNGMP 200 (544)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 200 (544)
+|.++.++. ..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+....+. .+++|+.|++++|.++.++
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 666665542 2345666666666666544 33455556666666666666654443333 4566666666666665543
Q ss_pred ccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCc
Q 009079 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (544)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 266 (544)
. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 2 2235566666666666665555555556666666666666655555555556666666655554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.5e-21 Score=181.21 Aligned_cols=160 Identities=28% Similarity=0.419 Sum_probs=95.6
Q ss_pred CCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079 379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 457 (544)
+++|++|++++|.++.++.. +..+++|++|++++|.++.++...|..+++|++|++++|++..++...+..+++|++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 44555556655555555443 35566666666666666665555556666666666666666665555556666666666
Q ss_pred cCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCccccc
Q 009079 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n~~~~ 535 (544)
+++|.++.+.+..|+.+++|+.|++++|.++.++.. +..+++|+.|++++|+++.+|. .+..+++|+.|++++|++.+
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 666666666555566666666666666666655433 4456666666666666665543 35556666666666666655
Q ss_pred ccc
Q 009079 536 NQQ 538 (544)
Q Consensus 536 ~~~ 538 (544)
++.
T Consensus 220 ~c~ 222 (270)
T 2o6q_A 220 TCN 222 (270)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1e-21 Score=185.82 Aligned_cols=197 Identities=22% Similarity=0.299 Sum_probs=129.5
Q ss_pred CCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (544)
Q Consensus 66 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 145 (544)
.+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 4455666666666555554 45556666666666666555544 555666666666666665553 45556666666666
Q ss_pred CCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC
Q 009079 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (544)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~ 225 (544)
+|.+..++. +..+++|++|++++|.++.+.. +..+++|++|++++|.+..++. +..+++|+.|++++|.++.++.
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 666665543 5666666666666666665554 6666777777777777766655 6777777788887777776654
Q ss_pred CccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchh
Q 009079 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271 (544)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 271 (544)
+..+++|+.|++++|.+..++. +..+++|+.|++++|.++..+..
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence 6677788888888888877763 67788888888888877665443
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.5e-21 Score=183.16 Aligned_cols=195 Identities=21% Similarity=0.336 Sum_probs=163.1
Q ss_pred ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 123 (544)
+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 456889999988888776 67888899999999888888876 888889999999988888775 578888899999999
Q ss_pred CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc
Q 009079 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (544)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (544)
|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.+.. +..+++|++|++++|.+..++. +
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l 191 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-L 191 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-h
Confidence 88888764 7888899999999988887765 7788889999999988887766 7888889999999998887765 7
Q ss_pred cCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCch
Q 009079 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (544)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~ 247 (544)
..+++|++|++++|.++.++ .+..+++|+.+++++|.+...|.
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred cCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 78888999999999888776 47888899999999988876654
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2e-21 Score=178.37 Aligned_cols=178 Identities=29% Similarity=0.366 Sum_probs=163.2
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 435 (544)
...++++++++.+..+|..+. +.++.|++++|.++.++. .+..+++|++|++++|.++.+.+..|..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999998774 689999999999998654 58999999999999999999988888999999999999
Q ss_pred CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCCC
Q 009079 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP 514 (544)
Q Consensus 436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l~ 514 (544)
+|++..++...+..+++|++|++++|.++.+.+..|..+++|+.|++++|.++.++. .+..+++|+.|++++|+++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 999999988889999999999999999999998889999999999999999998876 5778999999999999999885
Q ss_pred -cccccceeeeEeccCCcccccc
Q 009079 515 -EVTYIFVMLQKKSINTELVDKN 536 (544)
Q Consensus 515 -~~l~~~~~L~~l~l~~n~~~~~ 536 (544)
..+..+++|+.|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 4688999999999999999876
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=4.4e-21 Score=178.24 Aligned_cols=137 Identities=23% Similarity=0.306 Sum_probs=82.5
Q ss_pred CCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079 379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 457 (544)
+++|++|++++|.++.++.. +..+++|++|++++|.++.+++..+..+++|++|++++|++++++...+..+++|+.|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 45566666666666554433 45566666666666666666555556666666666666666665555556666666666
Q ss_pred cCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC-CCCcccccce
Q 009079 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFV 521 (544)
Q Consensus 458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~ 521 (544)
+++|.++.+.+..++.+++|+.|++++|.+. ..++.|+.+++..|.++ .+|..++.++
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 6666666666655666666666666666443 22455666666666665 4555554443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.9e-21 Score=177.17 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=108.0
Q ss_pred CCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCc-cccCCc-cccccCCccEEEcCC-CCCccCC-cccccCcCCCEEE
Q 009079 69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK 143 (544)
Q Consensus 69 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~-l~~l~~-~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~ 143 (544)
+|++|++++|.++.++. ++.++++|++|++++|. ++.++. .|..+++|++|++++ |.++.++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555544444433 44445555555555553 444433 344455555555554 4444443 2344455555555
Q ss_pred cCCCccccCCccccCCCCce---EEEecCC-ccccccchhhcCccccc-eEEcCCCcCCCCcccccCCCceeEEEccCCc
Q 009079 144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (544)
Q Consensus 144 l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 218 (544)
+++|.+..+|. +..+++|+ +|++++| .++.++...+..+++|+ +|++++|.++.+|......++|+.|++++|+
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 55555555443 44455554 6666666 66666666666666666 6666666666555443333667777777773
Q ss_pred -cccCC-cCCccC-CCCCEEEccCCcCCcCchhhhCCCCCCEEECCCC
Q 009079 219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (544)
Q Consensus 219 -~~~l~-~~~~~~-~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 263 (544)
++.++ ..+..+ ++|+.+++++|.++.+|.. .+++|+.|++.++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 66553 345666 6777777777777766653 5667777776654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1e-20 Score=175.83 Aligned_cols=179 Identities=26% Similarity=0.343 Sum_probs=161.0
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
..++.+++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 47899999999988765 4677899999999999999875 688999999999999999999888889999999999999
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC-
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP- 514 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~- 514 (544)
|++..++...+..+++|++|++++|.++.+.+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|+++.++
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 999998888889999999999999999999888899999999999999999987655 467999999999999999775
Q ss_pred cccccceeeeEeccCCccccccc
Q 009079 515 EVTYIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 515 ~~l~~~~~L~~l~l~~n~~~~~~ 537 (544)
..+..+++|+.|++++|++.+.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCT
T ss_pred HHHhCCcCCCEEEccCCCccccC
Confidence 45789999999999999998764
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.3e-21 Score=175.62 Aligned_cols=192 Identities=21% Similarity=0.305 Sum_probs=168.9
Q ss_pred cCccEEecccCcccchhH-hhcCCCCCCEEEcCCCC-CCCcch-hhhCCCCccEEEccC-CccccCCc-cccccCCccEE
Q 009079 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIPD-EIGSATALVKF 119 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~l~~l~~-~~~~~~~L~~L 119 (544)
.++++|+++++.++.++. .+.++++|++|++++|. ++.++. +|.++++|++|++++ |.++.++. .|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 469999999999998876 78999999999999997 888865 789999999999998 89998864 58899999999
Q ss_pred EcCCCCCccCCcccccCcCCC---EEEcCCC-ccccCCcc-ccCCCCce-EEEecCCccccccchhhcCccccceEEcCC
Q 009079 120 DCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPED-LADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (544)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (544)
++++|.++.+|. ++.+++|+ +|++++| .+..++.. +.++++|+ +|++++|.++.++...+.. ++|++|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999999999886 88888888 9999999 88877754 78899999 9999999999888887777 8999999999
Q ss_pred Cc-CCCCc-ccccCC-CceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079 194 NL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (544)
Q Consensus 194 ~~-~~~~~-~~l~~~-~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 240 (544)
|. ++.++ ..+..+ ++|+.|++++|.++.+|.. .+++|+.|++.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 95 88775 567888 9999999999999988765 6889999998875
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=182.99 Aligned_cols=226 Identities=20% Similarity=0.200 Sum_probs=164.4
Q ss_pred CCCCEEECCCCcCccc-----chhcccccccEEEccCCCCCC-CCccc--cCCCCcceeccCCCCCccccccccCCCchH
Q 009079 253 SKLGTLDLHSNQLKEY-----CVEACQLRLSVLDLSNNSLSG-LPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324 (544)
Q Consensus 253 ~~L~~L~l~~~~i~~~-----~~~~~~~~L~~L~l~~~~l~~-l~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 324 (544)
..++.+.+.++.+... .......+|++|++++|.+.+ .|..+ ..+++|++|++++|.+.....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 3466666666665421 112222348888888888776 45555 788899999999988753100
Q ss_pred HHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCc-hhhccCCCccEEEcCCCCCCCCC-hhhhcC
Q 009079 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELP-PELSSC 402 (544)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~ 402 (544)
.++ ..++.+++|++|++++|.++.++ ..+..+
T Consensus 135 ----------------------------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 135 ----------------------------------------------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp ----------------------------------------------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ----------------------------------------------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 000 12234678888888888887755 457888
Q ss_pred CCCcEEEccCCCCCCC---C-HHHHhCCCCCCEEECCCCCCCcCCCC---ccCCCCCcceEecCCcccCCCCCCCCCCC-
Q 009079 403 ASLQTLILSRNKIKDW---P-DAILTSLSSLSCLKLDNNPLRQVPSD---GFKDIPMLQILDLSYNIASLPENPPFSSL- 474 (544)
Q Consensus 403 ~~L~~L~l~~~~l~~~---~-~~~l~~~~~L~~L~l~~n~i~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l- 474 (544)
++|++|++++|.+... . ...+..+++|++|++++|+++.++.. .+..+++|++|++++|.++...+..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 8999999999886542 1 12235788899999999988754432 24567889999999999888877666666
Q ss_pred --ccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcccccc
Q 009079 475 --PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKN 536 (544)
Q Consensus 475 --~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~ 536 (544)
++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|. +..+++|+.|++++|++...
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCCC
Confidence 699999999999998887764 799999999999998865 68889999999999998754
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.1e-21 Score=190.48 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=38.7
Q ss_pred EcCCCcCCC-CcccccCCCceeEEEccCCccccCC-----cCCccCC-CCCEEEccCCcCCcC-chhhhCC-----CCCC
Q 009079 190 IASKNLLNG-MPETIGSLSRLIRLDLHQNRILSIP-----SSISGCC-SLAEFYMGNNALSAL-PAELGKL-----SKLG 256 (544)
Q Consensus 190 ~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~l~-----~~~~~~~-~L~~l~l~~~~~~~l-~~~l~~~-----~~L~ 256 (544)
.++.+.+.+ +|..+...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+... ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 455555543 2333344444666666666665443 3344444 566666665555532 2222222 5555
Q ss_pred EEECCCCcCcc
Q 009079 257 TLDLHSNQLKE 267 (544)
Q Consensus 257 ~L~l~~~~i~~ 267 (544)
+|++++|.++.
T Consensus 84 ~L~Ls~n~l~~ 94 (362)
T 3goz_A 84 SLNLSGNFLSY 94 (362)
T ss_dssp EEECCSSCGGG
T ss_pred EEECcCCcCCh
Confidence 55555555543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3.6e-21 Score=188.72 Aligned_cols=226 Identities=18% Similarity=0.205 Sum_probs=170.7
Q ss_pred ecCccEEecccCcccc-----hhHhhcCCCCCCEEEcCCCCCCC----cchh-------hhCCCCccEEEccCCcccc--
Q 009079 44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK-- 105 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~----l~~~-------~~~~~~L~~L~l~~~~l~~-- 105 (544)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5778888888888773 33457788888888888875542 2333 3678888888888888775
Q ss_pred ---CCccccccCCccEEEcCCCCCcc-----CCcccccC---------cCCCEEEcCCCccc--cCC---ccccCCCCce
Q 009079 106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS 163 (544)
Q Consensus 106 ---l~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~~~---~~~~~~~~L~ 163 (544)
++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|.+. .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 56677888888888888888762 22233344 78888888888875 333 3566778899
Q ss_pred EEEecCCcccc-----ccchhhcCccccceEEcCCCcC-----CCCcccccCCCceeEEEccCCcccc-----CCcCCc-
Q 009079 164 KLDVEGNKLTV-----LSNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSIS- 227 (544)
Q Consensus 164 ~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~-----l~~~~~- 227 (544)
+|++++|.++. +....+..+++|++|++++|.+ ..++..+..+++|++|++++|.++. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99998888773 2222477788899999999988 4567788889999999999998873 345553
Q ss_pred -cCCCCCEEEccCCcCCc-----Cchhh-hCCCCCCEEECCCCcCcccc
Q 009079 228 -GCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC 269 (544)
Q Consensus 228 -~~~~L~~l~l~~~~~~~-----l~~~l-~~~~~L~~L~l~~~~i~~~~ 269 (544)
.+++|+.|++++|.+.. +|..+ .++++|+.|++++|.++...
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 38999999999999996 77777 66899999999999998655
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.7e-21 Score=191.12 Aligned_cols=246 Identities=19% Similarity=0.169 Sum_probs=170.8
Q ss_pred cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCC-----cchhhhCCCCccEEEccCCcccc----CCccc-----
Q 009079 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK----IPDEI----- 110 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~~----l~~~~----- 110 (544)
+.|+...++...+..++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.. +|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 34555555665666788889999999999999998884 34457789999999999976552 33333
Q ss_pred --cccCCccEEEcCCCCCcc-----CCcccccCcCCCEEEcCCCcccc-----CCccccCC---------CCceEEEecC
Q 009079 111 --GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEG 169 (544)
Q Consensus 111 --~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~ 169 (544)
..+++|++|++++|.++. ++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 678999999999998875 55677888899999999888762 22233333 7888888888
Q ss_pred Cccccccc----hhhcCccccceEEcCCCcCCC------CcccccCCCceeEEEccCCccc-----cCCcCCccCCCCCE
Q 009079 170 NKLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAE 234 (544)
Q Consensus 170 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~ 234 (544)
|.++.... ..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.++ .++..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 87762221 245567778888888887761 2336667777888888877773 45566677777777
Q ss_pred EEccCCcCCc-----CchhhhC--CCCCCEEECCCCcCcc-----cchhcc--cccccEEEccCCCCCCC
Q 009079 235 FYMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE-----YCVEAC--QLRLSVLDLSNNSLSGL 290 (544)
Q Consensus 235 l~l~~~~~~~-----l~~~l~~--~~~L~~L~l~~~~i~~-----~~~~~~--~~~L~~L~l~~~~l~~l 290 (544)
|++++|.+.. ++..+.. +++|++|++++|.++. ++.... .++|++|++++|.+++.
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 7777777763 3455533 7777777777777765 433331 13466666666666553
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.8e-19 Score=164.01 Aligned_cols=136 Identities=29% Similarity=0.377 Sum_probs=89.5
Q ss_pred ccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079 377 WEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (544)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 455 (544)
..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++|++..++...+..+++|+.
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 335566666666666666443 3566667777777777666666666666677777777777776666665666677777
Q ss_pred EecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCC
Q 009079 456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQS 512 (544)
Q Consensus 456 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~ 512 (544)
|++++|.++.+.+..|+.+++|+.|++++|.++.++. .+..+++|+.|++++|++..
T Consensus 136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7777777766666666667777777777776665544 34556677777777777664
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=175.91 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=116.3
Q ss_pred cCccEEecccCcccc--hhH--hhcCCCCCCEEEcCCCCCC-Ccchhh--hCCCCccEEEccCCccccC-C----ccccc
Q 009079 45 VDLQKLILAHNNIEK--LKE--DLRNLPLLTVLNVSHNKLS-ELPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGS 112 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~--~~~--~~~~~~~L~~L~l~~~~~~-~l~~~~--~~~~~L~~L~l~~~~l~~l-~----~~~~~ 112 (544)
..++.+.+.+..+.. +.. .+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 345556666555541 111 1222345666666666655 333444 5566666666666665532 1 12334
Q ss_pred cCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCcccc---C--CccccCCCCceEEEecCCccccccch---hhcCc
Q 009079 113 ATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASW 183 (544)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 183 (544)
+++|++|++++|.+..++ ..++.+++|++|++++|.+.. + +..+..+++|++|++++|.++.++.. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 666666666666665444 345566666666666665432 1 12234555666666666665533322 23455
Q ss_pred cccceEEcCCCcCCCC-cccccCC---CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEE
Q 009079 184 TMLTELIASKNLLNGM-PETIGSL---SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 259 (544)
Q Consensus 184 ~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~ 259 (544)
++|++|++++|.+... |..+..+ ++|++|++++|.++.+|..+. ++|+.|++++|.+..+|. +..+++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence 5666666666666544 4444443 456666666666665555442 556666666666655543 45555666666
Q ss_pred CCCCcCc
Q 009079 260 LHSNQLK 266 (544)
Q Consensus 260 l~~~~i~ 266 (544)
+++|.++
T Consensus 301 L~~N~l~ 307 (310)
T 4glp_A 301 LDGNPFL 307 (310)
T ss_dssp CSSTTTS
T ss_pred CcCCCCC
Confidence 6655554
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=6.9e-21 Score=184.77 Aligned_cols=244 Identities=19% Similarity=0.215 Sum_probs=165.4
Q ss_pred eeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-----HhhcCCC-CCCEEEcCCCCCCCc-ch
Q 009079 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA 85 (544)
Q Consensus 13 ~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~-~L~~L~l~~~~~~~l-~~ 85 (544)
..+++.+.+....+..... .++|++|++++|.++..+ +.+..++ +|++|++++|.++.. +.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 3577888877555555443 345899999998888544 6778888 899999998888754 33
Q ss_pred hhhCC-----CCccEEEccCCccccCCcc-----cccc-CCccEEEcCCCCCccCCc-c----ccc-CcCCCEEEcCCCc
Q 009079 86 AIGEL-----HMLKSLDVSFNSIMKIPDE-----IGSA-TALVKFDCSSNQLKELPS-S----LGR-CLNLSDFKASNNC 148 (544)
Q Consensus 86 ~~~~~-----~~L~~L~l~~~~l~~l~~~-----~~~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~ 148 (544)
.+..+ ++|++|++++|.++..+.. +..+ ++|++|++++|.++..+. . +.. .++|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 44443 8899999998888754332 4444 788999998888875553 2 233 3588888888888
Q ss_pred cc-----cCCccccCCC-CceEEEecCCccccccchhh----cCc-cccceEEcCCCcCCC-----CcccccC-CCceeE
Q 009079 149 IT-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLI----ASW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR 211 (544)
Q Consensus 149 ~~-----~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~ 211 (544)
+. .++..+...+ +|++|++++|.++......+ ..+ ++|++|++++|.++. ++..+.. .++|++
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 77 3333444554 88888888888876554333 334 478888888888765 4455544 357888
Q ss_pred EEccCCccccCC-----cCCccCCCCCEEEccCCcCCcC--------chhhhCCCCCCEEECCCCcCccc
Q 009079 212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALSAL--------PAELGKLSKLGTLDLHSNQLKEY 268 (544)
Q Consensus 212 L~l~~~~~~~l~-----~~~~~~~~L~~l~l~~~~~~~l--------~~~l~~~~~L~~L~l~~~~i~~~ 268 (544)
|++++|.++..+ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+...
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 888888777442 3346667788888877774422 23355666777777777776644
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.3e-20 Score=181.26 Aligned_cols=240 Identities=16% Similarity=0.187 Sum_probs=131.7
Q ss_pred ccEEecccCcccchhHhhcCC--CCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCcccc--CCccccccCCccEEEcC
Q 009079 47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS 122 (544)
Q Consensus 47 L~~L~l~~~~l~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~ 122 (544)
+++++++++.+. +..+..+ ++++.++++++.+...+..+..+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455566555544 3334444 55666666665555444444455666666666665542 44445556666666666
Q ss_pred CCCCc-cCCcccccCcCCCEEEcCCC-ccc--cCCccccCCCCceEEEecCC-ccccc-cchhhcCcc-ccceEEcCCCc
Q 009079 123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKNL 195 (544)
Q Consensus 123 ~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~ 195 (544)
+|.++ ..+..++.+++|++|++++| .+. .++..+..+++|++|++++| .++.. ....+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 66554 33344555666666666665 344 23444555566666666666 55532 122355556 66666666663
Q ss_pred --C--CCCcccccCCCceeEEEccCCc-cc-cCCcCCccCCCCCEEEccCCc-CC-cCchhhhCCCCCCEEECCCCcCcc
Q 009079 196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLKE 267 (544)
Q Consensus 196 --~--~~~~~~l~~~~~L~~L~l~~~~-~~-~l~~~~~~~~~L~~l~l~~~~-~~-~l~~~l~~~~~L~~L~l~~~~i~~ 267 (544)
+ ..++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++|+.|++++| ++.
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 2 2344555566677777777666 33 334455666777777777664 22 11124566777777777777 433
Q ss_pred cchhcccccccEEEccCCCCCC
Q 009079 268 YCVEACQLRLSVLDLSNNSLSG 289 (544)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~l~~ 289 (544)
.........+..|++++|.+++
T Consensus 286 ~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp TCHHHHHHHSTTSEESCCCSCC
T ss_pred HHHHHHHhhCcceEEecccCcc
Confidence 2222222336666677776666
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.5e-19 Score=161.54 Aligned_cols=155 Identities=29% Similarity=0.364 Sum_probs=100.4
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (544)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n 461 (544)
.+.++++++.++.+|..+ .++|+.|++++|.++.+.+..|..+++|++|++++|++..++...|..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 445666666666665533 256666666666666665555666666666666666666666555666666666666666
Q ss_pred ccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCC-cccccceeeeEeccCCcccccccc
Q 009079 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EVTYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
.++.+.+..|..+++|+.|++++|.++.+|..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++.+++.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 66666666666666677777777666666666666667777777777666664 345666667777777776665543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.6e-19 Score=169.07 Aligned_cols=172 Identities=23% Similarity=0.308 Sum_probs=154.3
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
+.++.++++++.+..++. +..+++|++|++++|.+++++. +..+++|+.|++++|.+++++. +..+++|++|++++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence 568999999999998854 7778999999999999999877 8999999999999999998654 78999999999999
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcc
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~ 516 (544)
|++.+++ .+..+++|+.|++++|.++.+ ..++.+++|+.|++++|.++.++. +..+++|+.|++++|+++.+++
T Consensus 122 n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 122 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp SCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence 9999874 488899999999999999887 568899999999999999998866 8889999999999999999876
Q ss_pred cccceeeeEeccCCcccccccc
Q 009079 517 TYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 517 l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
+..+++|+.|++++|++.....
T Consensus 196 l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GTTCTTCSEEEEEEEEEECCCE
T ss_pred hccCCCCCEEECcCCcccCCcc
Confidence 8999999999999999875443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5.2e-19 Score=165.61 Aligned_cols=168 Identities=20% Similarity=0.300 Sum_probs=83.6
Q ss_pred cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 124 (544)
++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 34555555555555443 24445555555555555554443 4555555555555555544432 445555555555555
Q ss_pred CCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccccc
Q 009079 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204 (544)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (544)
.++.+ ..+..+++|+.|++++|.+..+ .. +..+++|++|++++|.+..++. +.
T Consensus 123 ~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~------------------------l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 123 GISDI-NGLVHLPQLESLYLGNNKITDI-TV------------------------LSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp CCCCC-GGGGGCTTCCEEECCSSCCCCC-GG------------------------GGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred cCCCC-hhhcCCCCCCEEEccCCcCCcc-hh------------------------hccCCCCCEEEccCCccccchh-hc
Confidence 55444 2344444455555554444444 23 4444555555555555544433 44
Q ss_pred CCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC
Q 009079 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (544)
Q Consensus 205 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 243 (544)
.+++|+.|++++|.++.++. +..+++|+.|++++|.+.
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred CCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 55555555555555554432 445555555555555544
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=4.2e-20 Score=177.72 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=31.5
Q ss_pred CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCc--CchhhhCCCCCCEEECCCCcCc
Q 009079 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA--LPAELGKLSKLGTLDLHSNQLK 266 (544)
Q Consensus 207 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~i~ 266 (544)
+.++.++++++.+...+..+..+++|+.|++++|.+.. ++..+..+++|++|++++|.++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~ 131 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence 34555555555554443344445555555555555541 4445555666666666555543
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1e-19 Score=176.29 Aligned_cols=179 Identities=25% Similarity=0.366 Sum_probs=159.7
Q ss_pred cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hh-cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (544)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 435 (544)
..+.++++++.+..+|..+. ..++.|++++|.++.++.. +. .+++|+.|++++|.++.+.+..|..+++|++|+++
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34689999999999998764 5699999999999997655 55 89999999999999999988889999999999999
Q ss_pred CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccc----cCCCCCCeeecCCCCCC
Q 009079 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~----~~~~~L~~L~l~~n~l~ 511 (544)
+|++..++...|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|..+ ..+++|+.|++++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99999998888999999999999999999999999999999999999999999998776 46999999999999999
Q ss_pred CCC-ccccccee--eeEeccCCcccccccc
Q 009079 512 SIP-EVTYIFVM--LQKKSINTELVDKNQQ 538 (544)
Q Consensus 512 ~l~-~~l~~~~~--L~~l~l~~n~~~~~~~ 538 (544)
.+| ..+..++. ++.|++++|++.++++
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 887 45677776 4889999999998875
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.4e-19 Score=158.78 Aligned_cols=154 Identities=26% Similarity=0.372 Sum_probs=123.3
Q ss_pred ceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (544)
Q Consensus 359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 437 (544)
-+.+++++++++.+|..+. +.++.|++++|.++.++. .+..+++|+.|++++|.++.+.+..|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4677888888888887663 678888888888887665 5778888888888888888877777888888888888888
Q ss_pred CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC
Q 009079 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP 514 (544)
Q Consensus 438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~ 514 (544)
+++.++...|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++.++.. +..+++|+.|++++|++.+-.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 88888777778888888888888888888888888888888888888888877654 566888888888888887543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=9.8e-19 Score=177.19 Aligned_cols=186 Identities=31% Similarity=0.433 Sum_probs=147.7
Q ss_pred CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 125 (544)
+++.|+++++.++.+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6888888888888777655 378888888888888887 457888888888888888877 544 88888888888
Q ss_pred CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (544)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (544)
++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++.++. +. ++|+.|++++|.++.+|. +..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence 888776 57888888888888888776 56788888888888888766 44 788888888888888877 544
Q ss_pred CCce-------eEEEccCCccccCCcCCccCCCCCEEEccCCcCC-cCchhhhCC
Q 009079 206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKL 252 (544)
Q Consensus 206 ~~~L-------~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~ 252 (544)
+| +.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 67 9999999999999888888999999999999987 445555443
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=6.1e-19 Score=156.83 Aligned_cols=170 Identities=26% Similarity=0.374 Sum_probs=141.2
Q ss_pred cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
..+.++++++++..+|..+ .+++++|++++|.++.++.. +..+++|++|++++|.++.++...|..+++|++|++++
T Consensus 8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3467788888888888766 45899999999998887654 67889999999999999988887788899999999999
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~ 515 (544)
|++..++...+..+++|++|++++|.++.+.+..|..+++|+.|++++|.++.++.. +..+++|+.|++++|++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 999988877788899999999999999988888888899999999999999877665 5668999999999997763
Q ss_pred ccccceeeeEeccCCccccc
Q 009079 516 VTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 516 ~l~~~~~L~~l~l~~n~~~~ 535 (544)
.++.|+.|++++|.+.+
T Consensus 163 ---~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTT
T ss_pred ---CCCCHHHHHHHHHhCCc
Confidence 33467777777777764
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=158.27 Aligned_cols=155 Identities=24% Similarity=0.289 Sum_probs=124.5
Q ss_pred cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCC--hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (544)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 435 (544)
..+.++++++.++.+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++.+++..|..+++|++|+++
T Consensus 12 ~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3467888888888888766 345678888888888763 237788888888888888888877778888888888888
Q ss_pred CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCC
Q 009079 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514 (544)
Q Consensus 436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~ 514 (544)
+|++..++...|..+++|++|++++|.++.+.+..|..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.+-.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 8888888777788888888888888888888888888888888888888888866 666777888888888888887543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.6e-18 Score=175.68 Aligned_cols=180 Identities=26% Similarity=0.376 Sum_probs=159.3
Q ss_pred CCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCC
Q 009079 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN 147 (544)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 147 (544)
.+++.|++++|.++.+|..+ .++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 38999999999999998765 378999999999999998 567999999999999999987 654 9999999999
Q ss_pred ccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCc
Q 009079 148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227 (544)
Q Consensus 148 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~ 227 (544)
.+..+|. .+++|+.|++++|.++.++. .+++|++|++++|.++.+|. +. ++|+.|++++|.++.+|. +.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~ 199 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP 199 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence 9999887 68999999999999998775 57899999999999999988 65 899999999999999888 54
Q ss_pred cCCCC-------CEEEccCCcCCcCchhhhCCCCCCEEECCCCcCccc
Q 009079 228 GCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (544)
Q Consensus 228 ~~~~L-------~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~ 268 (544)
. +| +.|++++|.++.+|..+..+++|+.|++++|.+++.
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 3 77 999999999999999888899999999999999754
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.6e-19 Score=157.57 Aligned_cols=154 Identities=13% Similarity=0.208 Sum_probs=135.4
Q ss_pred ccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (544)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 456 (544)
..++++++|++++|.++.++ .+..+++|++|++++|.++.+. .+..+++|++|++++|++.+.....+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44678999999999999988 6899999999999999887765 47889999999999999998555668999999999
Q ss_pred ecCCcccCCCCCCCCCCCccCceEeecCCc-ccccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccccc
Q 009079 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 457 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~ 535 (544)
++++|.++...+..++.+++|+.|++++|. ++.+| .+..+++|+.|++++|+++.++ .+..+++|+.|++++|++..
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 999999998777888999999999999997 88886 6888999999999999999987 68999999999999999865
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=5.2e-19 Score=162.91 Aligned_cols=169 Identities=20% Similarity=0.212 Sum_probs=144.1
Q ss_pred cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (544)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 437 (544)
.+..++++++.+..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.++++++ +..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 4566777888887776 5667889999999999999887 68889999999999999998876 789999999999999
Q ss_pred CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCccc
Q 009079 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVT 517 (544)
Q Consensus 438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l 517 (544)
++.+++.. .. ++|+.|++++|.++.+ ..++.+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+ +.+
T Consensus 96 ~l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 96 RLKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CCSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred ccCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 99887653 33 8999999999988886 35888999999999999999885 678899999999999999987 568
Q ss_pred ccceeeeEeccCCccccccc
Q 009079 518 YIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 518 ~~~~~L~~l~l~~n~~~~~~ 537 (544)
..+++|+.|++++|.+....
T Consensus 169 ~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTCCCCCEEEEEEEEEECCC
T ss_pred ccCCCCCEEeCCCCcccCCc
Confidence 89999999999999987653
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.5e-18 Score=167.46 Aligned_cols=233 Identities=20% Similarity=0.238 Sum_probs=170.5
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCC-Ccch-hhh
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG 88 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~-~l~~-~~~ 88 (544)
++++|++++++.+|.++. +++++|++++|.|+.+|. +|.++++|++|++++|.+. .++. +|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 678999999999987664 358999999999998875 6889999999999999875 4543 778
Q ss_pred CCCCccE-EEccCCccccC-CccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCC-CccccCCc-cccCC-CCc
Q 009079 89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM 162 (544)
Q Consensus 89 ~~~~L~~-L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~-~~L 162 (544)
++++|+. +.+..|+++.+ +..|..+++|++|++++|+++.++. .+....++..+++.+ +.+..++. .+..+ ..+
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 8888775 45556788877 4558889999999999998887764 344556677777755 45555543 23443 367
Q ss_pred eEEEecCCccccccchhhcCccccceEEcCC-CcCCCCcc-cccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (544)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 240 (544)
+.|++++|.++.++...+.. .+++++.+.+ +.++.+|. .|..+++|+.|++++|+++.+|... +.+|+.|.+.++
T Consensus 157 ~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~ 233 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARST 233 (350)
T ss_dssp EEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTC
T ss_pred hhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccC
Confidence 88888888888877775543 5678888764 66777764 5678888888888888888876532 556677765554
Q ss_pred -cCCcCchhhhCCCCCCEEECCCC
Q 009079 241 -ALSALPAELGKLSKLGTLDLHSN 263 (544)
Q Consensus 241 -~~~~l~~~l~~~~~L~~L~l~~~ 263 (544)
.++.+|. +..+++|+.+++.++
T Consensus 234 ~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCC-TTTCCSCCEEECSCH
T ss_pred CCcCcCCC-chhCcChhhCcCCCC
Confidence 4556664 677788888877643
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.7e-18 Score=154.99 Aligned_cols=156 Identities=22% Similarity=0.281 Sum_probs=141.1
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (544)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n 461 (544)
-+.++++++.++.+|..+. ++++.|++++|.++.++...|..+++|++|++++|++..+....|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4689999999999987654 78999999999999988888899999999999999999988888999999999999999
Q ss_pred ccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCC-cccccceeeeEeccCCccccccccc
Q 009079 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EVTYIFVMLQKKSINTELVDKNQQF 539 (544)
Q Consensus 462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~l~l~~n~~~~~~~~ 539 (544)
.++.+.+..|..+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++.+++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999988899999999999999999977 566778999999999999999885 4588999999999999999887653
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=154.31 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=140.7
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCC-HHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (544)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 460 (544)
-+.++++++.++.+|..+ .+.+++|++++|.++.+. ...|..+++|++|++++|+++.++...|..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 468999999999998754 356799999999999874 45578999999999999999999888899999999999999
Q ss_pred cccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCC-CcccccceeeeEeccCCcccccccc
Q 009079 461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEVTYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
|.++.+.+..|..+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|++.+++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999999999999999977 67788899999999999999987 7789999999999999999998776
Q ss_pred c
Q 009079 539 F 539 (544)
Q Consensus 539 ~ 539 (544)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 3
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=8.1e-18 Score=162.23 Aligned_cols=209 Identities=18% Similarity=0.213 Sum_probs=148.3
Q ss_pred cEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCccc-cCCc-cccccCCccE-EEcCC
Q 009079 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIPD-EIGSATALVK-FDCSS 123 (544)
Q Consensus 48 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~~L~~-L~l~~ 123 (544)
+.++.+++.++++|..+ .+++++|++++|+++.+|. +|.++++|++|++++|.+. .++. .|..++++++ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67889999999998776 3689999999999999976 7899999999999999875 4554 4788888775 55667
Q ss_pred CCCccCC-cccccCcCCCEEEcCCCccccCCcc-ccCCCCceEEEecC-CccccccchhhcCcc-ccceEEcCCCcCCCC
Q 009079 124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM 199 (544)
Q Consensus 124 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~ 199 (544)
|+++.++ ..+..+++|++|++++|.+..++.. +....++..+++.+ +.+..++...|..+. .++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 8888775 4678888999999999888876543 44556677787755 466666666566554 466677777777666
Q ss_pred cccccCCCceeEEEccC-CccccCCc-CCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEEC
Q 009079 200 PETIGSLSRLIRLDLHQ-NRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 260 (544)
Q Consensus 200 ~~~l~~~~~L~~L~l~~-~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l 260 (544)
+.......+|+++++++ |.++.+|. .+..+++|+.|++++|.++.+|. ..+.+|+.|.+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~ 230 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRA 230 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEEC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhh
Confidence 65555556677777653 55556654 34566666666666666666654 23444444444
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.9e-18 Score=174.88 Aligned_cols=170 Identities=24% Similarity=0.311 Sum_probs=147.4
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
..++.|+++++.+..++ .+..+++|+.|++++|.++.++. +..+++|+.|+|++|.++.++ .+..+++|+.|++++
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence 46888999999988876 47778999999999999998876 889999999999999998865 478899999999999
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcc
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~ 516 (544)
|++.+++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|+++.+++
T Consensus 119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~- 192 (605)
T 1m9s_A 119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 192 (605)
T ss_dssp SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH-
Confidence 9998874 478899999999999998887 568889999999999999987765 7889999999999999998864
Q ss_pred cccceeeeEeccCCcccccc
Q 009079 517 TYIFVMLQKKSINTELVDKN 536 (544)
Q Consensus 517 l~~~~~L~~l~l~~n~~~~~ 536 (544)
+..+++|+.|++++|++...
T Consensus 193 l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCSEEECCSEEEECC
T ss_pred HccCCCCCEEEccCCcCcCC
Confidence 78899999999999988765
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=9.9e-18 Score=148.96 Aligned_cols=155 Identities=30% Similarity=0.362 Sum_probs=139.7
Q ss_pred CccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (544)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 460 (544)
.-+.++++++.++.+|..+ .++|++|++++|.++.++...|..+++|++|++++|++..++...+..+++|++|++++
T Consensus 8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3467899999999988654 56999999999999999888889999999999999999999888889999999999999
Q ss_pred cccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCccccccc
Q 009079 461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n~~~~~~ 537 (544)
|.++.+.+..|+.+++|+.|++++|.++.++.. +..+++|+.|++++|+++.+++ .+..+++|+.|++++|++.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 999999888899999999999999999988765 5679999999999999998865 4788999999999999988764
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=8.6e-18 Score=172.33 Aligned_cols=172 Identities=23% Similarity=0.348 Sum_probs=131.0
Q ss_pred ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 123 (544)
+++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 456888888888887775 57778888888888888887765 777888888888888877765 577788888888888
Q ss_pred CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc
Q 009079 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (544)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (544)
|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.. +..+++|+.|++++|.+..++ .+
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 8887763 577778888888888877776 567777888888888887776655 777777888888888777764 47
Q ss_pred cCCCceeEEEccCCccccCC
Q 009079 204 GSLSRLIRLDLHQNRILSIP 223 (544)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~l~ 223 (544)
..+++|+.|++++|.+...|
T Consensus 194 ~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCTTCSEEECCSEEEECCC
T ss_pred ccCCCCCEEEccCCcCcCCc
Confidence 77777888888777776543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=3.2e-18 Score=157.63 Aligned_cols=169 Identities=20% Similarity=0.251 Sum_probs=105.9
Q ss_pred cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 124 (544)
.+++.++++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 34666666666666655 4566677777777777766665 56666777777777777666655 666677777777777
Q ss_pred CCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccccc
Q 009079 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204 (544)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (544)
+++.++.... ++|++|++++|.+..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+..+ ..+.
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~ 169 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLT 169 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTST
T ss_pred ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhc
Confidence 6666553222 66666666666666553 3556666666666666666553 255556666666666666555 4455
Q ss_pred CCCceeEEEccCCccccC
Q 009079 205 SLSRLIRLDLHQNRILSI 222 (544)
Q Consensus 205 ~~~~L~~L~l~~~~~~~l 222 (544)
.+++|+.|++++|.++..
T Consensus 170 ~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEeCCCCcccCC
Confidence 566666666666655544
No 114
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.75 E-value=5.2e-17 Score=159.27 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=69.1
Q ss_pred CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec
Q 009079 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 458 (544)
+..++.+......+.. .++..+.+|+.+.+..+ ++.+...+|.+|.+|+.+++.. .++.+...+|.+|++|+.+++
T Consensus 275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECC
T ss_pred ccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEE
Confidence 3444444444332221 23556666666666543 5556666666667777776653 366666666667777777776
Q ss_pred CCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCee
Q 009079 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503 (544)
Q Consensus 459 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L 503 (544)
..+ ++.++..+|.+|++|+.+++..+ ++.+...|.++++|+.+
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 655 66666666666667776666544 33334445556655543
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.7e-17 Score=148.22 Aligned_cols=156 Identities=26% Similarity=0.314 Sum_probs=140.0
Q ss_pred cccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEEC
Q 009079 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434 (544)
Q Consensus 356 ~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 434 (544)
.+..+.++++++.+..+|..+. ++++.|++++|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|++
T Consensus 18 ~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 18 SCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3456789999999999998774 8999999999999996 566899999999999999999998888899999999999
Q ss_pred CCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCC
Q 009079 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 435 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l 513 (544)
++|+++.++...|..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++.+-
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 99999999888899999999999999999966 4567889999999999999998875 466799999999999999855
Q ss_pred C
Q 009079 514 P 514 (544)
Q Consensus 514 ~ 514 (544)
+
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 4
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=7.2e-18 Score=148.30 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=132.4
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
+.++.++++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 57899999999999888 6888999999999999887775 688899999999999999875555688999999999999
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcc-cCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCC
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS 512 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~ 512 (544)
|++.+.....+..+++|++|++++|. ++.+. .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99998655678999999999999997 77774 5899999999999999999887 77889999999999999863
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=3.5e-17 Score=156.45 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=72.9
Q ss_pred cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc-eEecCCcccCCCCCCCCCCCccCce
Q 009079 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQE 479 (544)
Q Consensus 401 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~ 479 (544)
.|++|+++++++|.++.++..+|.+|++|+.+++.+| +..++..+|.+|++|+ .+++.+ .++.++..+|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3677777777777777777777777777777777766 6667777777777777 777776 566777777777777777
Q ss_pred EeecCCcccccCc-cccCCCCCCeeec
Q 009079 480 LYLRRMQLREAPT-DILRLQQLRILDL 505 (544)
Q Consensus 480 L~ls~n~l~~i~~-~~~~~~~L~~L~l 505 (544)
+++++|.++.++. .|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 7777777776654 4455777777653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=6.5e-19 Score=179.58 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=101.3
Q ss_pred eeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCC-------------CC-CcchhhhCCCCccEEE-ccCCccccC
Q 009079 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI 106 (544)
Q Consensus 42 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-------------~~-~l~~~~~~~~~L~~L~-l~~~~l~~l 106 (544)
+.+++|+.|+++++.++.+|..+.++++|++|+++++. .. .+|..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45778888899988888888888888888888886653 11 3345666666777666 444433322
Q ss_pred Cc------cccc--cCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccch
Q 009079 107 PD------EIGS--ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178 (544)
Q Consensus 107 ~~------~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 178 (544)
+. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--
Confidence 21 0111 1235556666665555554 55555556666555555555555555555555555555555443
Q ss_pred hhcCccccceEEcCCCcCCCC--cccccCCCceeEEEccCCccccC
Q 009079 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSI 222 (544)
Q Consensus 179 ~~~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~l 222 (544)
.++.+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 244444555555555444444 44444444444444444444433
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=8e-17 Score=155.91 Aligned_cols=153 Identities=25% Similarity=0.283 Sum_probs=137.4
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh-CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (544)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 460 (544)
-+.++++++.++.+|..+ .+.++.|++++|.++.+....|. .+++|+.|++++|++..++...|..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 468999999999998754 35699999999999998887777 899999999999999999888899999999999999
Q ss_pred cccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCCccc----ccceeeeEeccCCccccc
Q 009079 461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEVT----YIFVMLQKKSINTELVDK 535 (544)
Q Consensus 461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~~~l----~~~~~L~~l~l~~n~~~~ 535 (544)
|.++.+.+..|..+++|+.|+|++|.++.+ +..+..+++|+.|++++|+++.+|... ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999999999999999999999999999977 566788999999999999999997654 579999999999999975
Q ss_pred c
Q 009079 536 N 536 (544)
Q Consensus 536 ~ 536 (544)
.
T Consensus 178 l 178 (361)
T 2xot_A 178 L 178 (361)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.4e-15 Score=149.05 Aligned_cols=144 Identities=15% Similarity=0.229 Sum_probs=114.3
Q ss_pred hccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (544)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 455 (544)
+..+..++.+.+..+...--...+..+..++.+......+ +...|..+.+|+.+.+.++ +..++..+|.+|++|+.
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 3446778888887765443445688899999998876543 4455788999999999764 88888889999999999
Q ss_pred EecCCcccCCCCCCCCCCCccCceEeecCCcccccC-ccccCCCCCCeeecCCCCCCCCCcccccceeeeEe
Q 009079 456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKK 526 (544)
Q Consensus 456 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l 526 (544)
+++.++ ++.++..+|.+|.+|+.+++..+ ++.|+ ..|..|++|+.+++..+ +..+...+..+++|+.+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 999865 88899999999999999999877 66664 45667999999999754 55566678899999876
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=5.3e-18 Score=172.90 Aligned_cols=193 Identities=18% Similarity=0.184 Sum_probs=154.6
Q ss_pred HhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCc--------------ccchhHhhcCCCCCCE
Q 009079 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTV 72 (544)
Q Consensus 7 ~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------l~~~~~~~~~~~~L~~ 72 (544)
....++.|+|++|.++.+|+.+.. +++|+.|+++.+. ....|..+..+++|+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhccc
Confidence 456788999999999999987765 5778888886653 2245667888888888
Q ss_pred EE-cCCCCCCCcch------hhhC--CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEE
Q 009079 73 LN-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (544)
Q Consensus 73 L~-l~~~~~~~l~~------~~~~--~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 143 (544)
|+ ++.+.+..++. .+.. ...|++|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|+
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 492 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEE
Confidence 88 55554443321 1111 2368999999999999987 8999999999999999999999999999999999
Q ss_pred cCCCccccCCccccCCCCceEEEecCCcccccc-chhhcCccccceEEcCCCcCCCCcccc----cCCCceeEEEc
Q 009079 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETI----GSLSRLIRLDL 214 (544)
Q Consensus 144 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~l 214 (544)
+++|.++.+| .+..+++|+.|++++|.++.+. ...+..+++|+.|++++|.++.+|... ..+++|+.|++
T Consensus 493 Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999988 8899999999999999999885 566899999999999999998765432 34677887753
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=3.1e-16 Score=136.98 Aligned_cols=128 Identities=23% Similarity=0.300 Sum_probs=94.5
Q ss_pred ceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh--hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
.+.++++++.+..+|..+. .++++|++++|.++.++.. +..+++|++|++++|.++.+.+..|..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4677777777777777553 3777777777777776543 67777777777777777777666677777777777777
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
|++..++...|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7777776666777777777777777777777777777777777777777665
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.4e-16 Score=136.23 Aligned_cols=134 Identities=22% Similarity=0.169 Sum_probs=92.1
Q ss_pred CCccEEEcCCCCCC--CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079 380 GEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (544)
Q Consensus 380 ~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 457 (544)
++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|++.+.....+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 5666667777777777777777766 4456677777777777777664344455567777777
Q ss_pred cCCcccCCCCC-CCCCCCccCceEeecCCcccccCc----cccCCCCCCeeecCCCCCCCCCc
Q 009079 458 LSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPT----DILRLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 458 l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~i~~----~~~~~~~L~~L~l~~n~l~~l~~ 515 (544)
+++|.++.+.. ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..+|+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 77777666532 556667777777777777776665 55667777777777777776664
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=1e-14 Score=142.07 Aligned_cols=127 Identities=11% Similarity=0.180 Sum_probs=73.3
Q ss_pred CccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCC-----CCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079 381 EITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIK-----DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (544)
Q Consensus 381 ~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 454 (544)
+|+.+.+. +.++.+ ..+|..|++|+.+++.++.+. .+...+|.+|++|+.+.+. +.+..+...+|.+|++|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 34444442 223333 234556666666666555443 3555566666666666666 346666666666667777
Q ss_pred eEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCC-CCCeeecCCCCCC
Q 009079 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQ-QLRILDLSQNSLQ 511 (544)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~-~L~~L~l~~n~l~ 511 (544)
.+++.++ ++.+...+|.+| +|+.+++++|.+..++.. |..++ .++.|++..+.+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7776544 666666666666 677777776666554333 33343 5666666655544
No 125
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.65 E-value=7.2e-15 Score=144.02 Aligned_cols=130 Identities=13% Similarity=0.209 Sum_probs=77.9
Q ss_pred hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (544)
Q Consensus 398 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 477 (544)
+|..|..|+.+.+..+ +..+...+|.++++|+.+.+. +.+..++..+|.+|++|+.+++.++ ++.++..+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4666777777777653 344555666777777777774 4566666677777777777777654 666677777777777
Q ss_pred ceEeecCCcccccC-ccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccc
Q 009079 478 QELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELV 533 (544)
Q Consensus 478 ~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~ 533 (544)
+.+.+..+ ++.|. ..|.+|++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 77777654 55553 345567777777777664331 2355666777776665544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.6e-15 Score=131.04 Aligned_cols=127 Identities=27% Similarity=0.378 Sum_probs=71.9
Q ss_pred eeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCC
Q 009079 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (544)
Q Consensus 360 ~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i 439 (544)
+.++++++.+..+|..+ .+++++|++++|.++.+|..+..+++|+.|++++|.++.+.+..|..+++|++|++++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 45555666655555544 2455566666665555555555555666666666555555555555555555555555555
Q ss_pred CcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 440 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
..++...|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5555555555555555555555555555555555555555555555443
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=9.6e-15 Score=142.30 Aligned_cols=126 Identities=9% Similarity=0.110 Sum_probs=58.6
Q ss_pred CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCC-----cCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (544)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 477 (544)
.+|+.+.+. +.++.+...+|.+|++|+.+.+.++.+. .++..+|.+|++|+.+++.+ .++.++..+|.+|++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 345555552 2344444444555555555555544433 34444455555555555552 2455555555555555
Q ss_pred ceEeecCCcccccC-ccccCCCCCCeeecCCCCCCCCC-cccccce-eeeEeccCCcc
Q 009079 478 QELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIP-EVTYIFV-MLQKKSINTEL 532 (544)
Q Consensus 478 ~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~-~L~~l~l~~n~ 532 (544)
+.+++..+ ++.++ ..|.++ +|+.+++.+|.+..++ ..+..++ .++.|.+-.+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 55555433 33332 223334 5555555555544432 2233332 34444444443
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=8.8e-16 Score=146.66 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=92.4
Q ss_pred CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCc-eEeecCCcccccC-ccccCCCCCCe
Q 009079 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ-ELYLRRMQLREAP-TDILRLQQLRI 502 (544)
Q Consensus 425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~ls~n~l~~i~-~~~~~~~~L~~ 502 (544)
.|++|+.+++++|++..++..+|.+|++|+.+++.+| +..++..+|.+|++|+ .+++++ .++.|+ ..|..|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4899999999999999999999999999999999998 9999999999999999 999999 788775 56777999999
Q ss_pred eecCCCCCCCCC-cccccceeeeEec
Q 009079 503 LDLSQNSLQSIP-EVTYIFVMLQKKS 527 (544)
Q Consensus 503 L~l~~n~l~~l~-~~l~~~~~L~~l~ 527 (544)
+++.+|+++.++ ..+..+++|+.+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 999999999885 5789999999875
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=5.9e-16 Score=135.23 Aligned_cols=148 Identities=24% Similarity=0.340 Sum_probs=125.2
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHH-HHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (544)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 460 (544)
-+.++++++.++.+|..+. +++++|++++|.++.+... .|..+++|++|++++|+++.+....|..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4789999999999997654 4999999999999988764 578999999999999999998888899999999999999
Q ss_pred cccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCc
Q 009079 461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTE 531 (544)
Q Consensus 461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n 531 (544)
|.++.+.+..|+.+++|+.|++++|.++.+ |..+..+++|+.|++++|++..-....+...+++...+.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~ 159 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG 159 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCC
Confidence 999999999999999999999999999965 67788899999999999999854433333333443344433
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.7e-15 Score=130.92 Aligned_cols=130 Identities=24% Similarity=0.295 Sum_probs=118.7
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (544)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n 461 (544)
-+.++++++.++.+|..+ .++|++|++++|.++.++ ..|..+++|+.|++++|+++.++...|..+++|+.|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 468999999999998764 368999999999999887 56899999999999999999998888999999999999999
Q ss_pred ccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC
Q 009079 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP 514 (544)
Q Consensus 462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~ 514 (544)
.++.+.+.+|..+++|+.|+|++|.++.+|.. +..+++|+.|++++|++.+-.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 99999999999999999999999999988775 667999999999999997543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1e-15 Score=130.86 Aligned_cols=140 Identities=25% Similarity=0.290 Sum_probs=125.2
Q ss_pred hcccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCC
Q 009079 353 TRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430 (544)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 430 (544)
...++.++.+++++|.+. .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++...+..+..+++|+
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 344578999999999998 8888888899999999999999988 6789999999999999999996666678899999
Q ss_pred EEECCCCCCCcCCC-CccCCCCCcceEecCCcccCCCCC---CCCCCCccCceEeecCCcccccCcc
Q 009079 431 CLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPEN---PPFSSLPHLQELYLRRMQLREAPTD 493 (544)
Q Consensus 431 ~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ls~n~l~~i~~~ 493 (544)
+|++++|++++++. ..+..+++|+.|++++|.++.... ..+..+++|+.|++++|.+..+|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999999998754 568999999999999999998876 5789999999999999999888764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=3.6e-16 Score=134.68 Aligned_cols=131 Identities=20% Similarity=0.229 Sum_probs=70.3
Q ss_pred hcCCCCcEEEccCCCCCCCCHHHHhCC-CCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCc
Q 009079 400 SSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478 (544)
Q Consensus 400 ~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 478 (544)
..+++|++|++++|.++.++. +..+ ++|++|++++|.+.++ ..+..+++|++|++++|.++.+.+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 344455555555555554421 2222 2555555555555554 2355555555555555555554444345556666
Q ss_pred eEeecCCcccccCc--cccCCCCCCeeecCCCCCCCCCcc----cccceeeeEeccCCcccc
Q 009079 479 ELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPEV----TYIFVMLQKKSINTELVD 534 (544)
Q Consensus 479 ~L~ls~n~l~~i~~--~~~~~~~L~~L~l~~n~l~~l~~~----l~~~~~L~~l~l~~n~~~ 534 (544)
.|++++|.++.+|. .+..+++|+.|++++|+++.+|.. +..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666666655554 455566666666666666655553 556666666666666543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=9.1e-15 Score=126.03 Aligned_cols=130 Identities=28% Similarity=0.393 Sum_probs=88.4
Q ss_pred ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (544)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n 461 (544)
.+.+++++++++.+|..+ .++|++|++++|.++.++...|..+++|++|++++|+++.++...+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666666666666433 356777777777777666665666777777777777777666666667777777777777
Q ss_pred ccCCCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCC
Q 009079 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l 513 (544)
.++.+.+..+..+++|+.|++++|.++.+|... ..+++|+.|++++|++...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777766666677777777777777777666543 4577777777777776643
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=4.6e-16 Score=130.06 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCccEEEcCCCCCC--CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079 380 GEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (544)
Q Consensus 380 ~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 457 (544)
++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~---------------- 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG---------------- 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc----------------
Confidence 45556666665555 3555455555555555555555544 234445555555555555544
Q ss_pred cCCcccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCCc----ccccceeeeEeccC
Q 009079 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----VTYIFVMLQKKSIN 529 (544)
Q Consensus 458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~~----~l~~~~~L~~l~l~ 529 (544)
..+..++.+++|+.|++++|.++.++ ..+..+++|+.|++++|+++.+++ .+..+++|+.|+++
T Consensus 79 --------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 --------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33333334455555555555555432 444555555555555555555443 35555555555554
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=8.2e-16 Score=161.81 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=115.2
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhh
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~ 88 (544)
..++.++|+++.+...+........- .--++..++++.+.+...+..+..+++|+.|+|++|.+..+|..+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 34678888888877666444332000 0012233333344444456678899999999999999999988777
Q ss_pred CCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEec
Q 009079 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 168 (544)
++++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 89999999999999999998899999999999999999999989999999999999999999999889999999999999
Q ss_pred CCccccccchhhcCccc-cceEEcCCCcCCCCcccccCCCceeEEEccCC
Q 009079 169 GNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 217 (544)
+|.++......+..... ...+++.+|.+... ....|+.|+++.+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP-----LPHERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCc-----CccccceeEeecc
Confidence 99988665554544322 23456777776431 1235666677665
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.59 E-value=8e-14 Score=136.59 Aligned_cols=127 Identities=15% Similarity=0.278 Sum_probs=81.8
Q ss_pred CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec
Q 009079 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 458 (544)
+..|+.+.+......--..++..|+.|+.+.+. +.++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+
T Consensus 264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp CSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 445555655543322233356777788888775 3566777777888888888888653 77777778888888888888
Q ss_pred CCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCC
Q 009079 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL 510 (544)
Q Consensus 459 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l 510 (544)
.++ ++.++..+|.+|++|+.+++.++... + ..+..+..|+.+.+..+.+
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC----------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCCE
Confidence 755 77788888888888888888877433 1 3456677888887766543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=1.7e-15 Score=130.33 Aligned_cols=134 Identities=22% Similarity=0.243 Sum_probs=108.1
Q ss_pred hccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (544)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 455 (544)
+..+++++.|++++|.++.++......++|+.|++++|.++++ ..+..+++|++|++++|++..++...+..+++|+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3446788889999888888865444445899999999988876 34788889999999999988887666688889999
Q ss_pred EecCCcccCCCCC-CCCCCCccCceEeecCCcccccCcc----ccCCCCCCeeecCCCCCC
Q 009079 456 LDLSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 456 L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~i~~~----~~~~~~L~~L~l~~n~l~ 511 (544)
|++++|.++.+.. ..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999998877653 3678889999999999999888775 778999999999998765
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=7e-15 Score=122.81 Aligned_cols=128 Identities=21% Similarity=0.241 Sum_probs=103.4
Q ss_pred ccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEE
Q 009079 355 LSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432 (544)
Q Consensus 355 ~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 432 (544)
..+.++.+++++|.+. .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4478999999999998 8888888899999999999999998 678999999999999999999667777889999999
Q ss_pred ECCCCCCCcCCC-CccCCCCCcceEecCCcccCCCCC---CCCCCCccCceEeec
Q 009079 433 KLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPEN---PPFSSLPHLQELYLR 483 (544)
Q Consensus 433 ~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ls 483 (544)
++++|++++++. ..+..+++|+.|++++|.++...+ ..++.+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999988642 446667777777777776666544 345555666666554
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=4.8e-14 Score=121.49 Aligned_cols=131 Identities=27% Similarity=0.444 Sum_probs=118.8
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 435 (544)
+..+.++++++++..+|..+. +++++|++++|.++.++.. +..+++|++|++++|.++.+++..|..+++|++|+++
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356789999999999987663 6899999999999997764 6899999999999999999988888999999999999
Q ss_pred CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc
Q 009079 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489 (544)
Q Consensus 436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 489 (544)
+|+++.++...+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999999988888999999999999999999988888999999999999998874
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=4.7e-14 Score=148.43 Aligned_cols=176 Identities=17% Similarity=0.142 Sum_probs=101.3
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEE-----EcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCE
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKL-----DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L-----~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 431 (544)
+.++.+.+.++.+..++..+.....|..+ ++..+.+...+..+..++.|+.|+|++|.+..++... ..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCE
Confidence 44677777777776655544333233222 2222333334556778888888888888888776654 47888888
Q ss_pred EECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 432 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~ 511 (544)
|+|++|.++.++. .+..+++|+.|+|++|.++.+ +..|+.+++|+.|+|++|.++.+|..+..+++|+.|+|++|+++
T Consensus 252 L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 8888888887663 477888888888888888855 66788888888888888888888888888888888888888888
Q ss_pred CC-Cccccccee-eeEeccCCccccc
Q 009079 512 SI-PEVTYIFVM-LQKKSINTELVDK 535 (544)
Q Consensus 512 ~l-~~~l~~~~~-L~~l~l~~n~~~~ 535 (544)
.. |..+..... +..+++++|.+.+
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCChHHHhhcchhhhHHhhccCcccC
Confidence 43 554443322 2346777777764
No 141
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.47 E-value=6.7e-12 Score=122.33 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=58.7
Q ss_pred cCCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079 378 EAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (544)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 456 (544)
.+..|+.+.+..+ ++.+. .++..+.+|+.+.+.. .++.+....|.+|.+|+.+.+.++.+..++..+|.+|++|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3445555555543 33322 2355566666666643 3445555555666666666666555666655566666666666
Q ss_pred ecCCcccCCCCCCCCCCCccCceEeecCC
Q 009079 457 DLSYNIASLPENPPFSSLPHLQELYLRRM 485 (544)
Q Consensus 457 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 485 (544)
++.++ ++.++..+|.+|.+|+.+.+..+
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66543 55555566666666666666543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=3.8e-15 Score=130.96 Aligned_cols=143 Identities=27% Similarity=0.298 Sum_probs=112.8
Q ss_pred CccEEecccC--cccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079 46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (544)
Q Consensus 46 ~L~~L~l~~~--~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 123 (544)
.++...+.+. .++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 4555555554 45567778999999999999999988888 88889999999999999988888888889999999999
Q ss_pred CCCccCCcccccCcCCCEEEcCCCccccCCc--cccCCCCceEEEecCCccccccc----------hhhcCccccceEE
Q 009079 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSN----------NLIASWTMLTELI 190 (544)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~L~~L~ 190 (544)
|.++.++ .+..+++|++|++++|.+..++. .+..+++|++|++++|++..... ..+..+++|+.|+
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9988876 67888899999999998887654 67788899999998888764422 2245555666554
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=5.4e-16 Score=136.37 Aligned_cols=150 Identities=24% Similarity=0.268 Sum_probs=102.8
Q ss_pred ccEEEcCCC--CCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079 382 ITKLDLSRN--SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (544)
Q Consensus 382 L~~L~l~~~--~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 459 (544)
+....+.+. .++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|++..++. .+..+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECc
Confidence 334444433 34455556777777777777777777765 46677777777777777776653 34556777777777
Q ss_pred CcccCCCCCCCCCCCccCceEeecCCcccccCc--cccCCCCCCeeecCCCCCCCC-Cc----------ccccceeeeEe
Q 009079 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSI-PE----------VTYIFVMLQKK 526 (544)
Q Consensus 460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~--~~~~~~~L~~L~l~~n~l~~l-~~----------~l~~~~~L~~l 526 (544)
+|.++.+. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|+++.. |. .+..+++|+.|
T Consensus 102 ~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 77777653 46677888888888888876653 566788888888888887644 22 26778888888
Q ss_pred ccCCcccccccc
Q 009079 527 SINTELVDKNQQ 538 (544)
Q Consensus 527 ~l~~n~~~~~~~ 538 (544)
| ++++...+.
T Consensus 180 d--~~~i~~~e~ 189 (198)
T 1ds9_A 180 D--GMPVDVDER 189 (198)
T ss_dssp C--CGGGTTTTT
T ss_pred C--CcccCHHHH
Confidence 7 777766554
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.44 E-value=1.4e-11 Score=120.10 Aligned_cols=98 Identities=16% Similarity=0.310 Sum_probs=80.4
Q ss_pred ccCCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079 377 WEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (544)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 455 (544)
..+.+++.+.+... ++.++ .+|..|++|+.+.+.++.++.+...+|.+|.+|+.+.+..+ +..+...+|.+|++|+.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 34667888888653 44443 35889999999999998999998889999999999999754 88888889999999999
Q ss_pred EecCCcccCCCCCCCCCCCccC
Q 009079 456 LDLSYNIASLPENPPFSSLPHL 477 (544)
Q Consensus 456 L~l~~n~l~~~~~~~~~~l~~L 477 (544)
+.+..+ ++.++..+|.++..+
T Consensus 338 i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 338 ISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCTT-CCEECTTTTTTSSCC
T ss_pred EEECCc-cCEEchhHhhCCCCC
Confidence 999865 788888889887543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1e-12 Score=111.93 Aligned_cols=106 Identities=26% Similarity=0.362 Sum_probs=75.8
Q ss_pred CccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (544)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 460 (544)
..+.++++++.++.+|..+ .++|++|++++|.++.+.+..|..+++|++|++++|++..++...|..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3456777777777776544 36777777777777777666677777777777777777777666667777777777777
Q ss_pred cccCCCCCCCCCCCccCceEeecCCccc
Q 009079 461 NIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
|+++.+.+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777776666777777777777777665
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.1e-12 Score=112.19 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=72.4
Q ss_pred cEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcc
Q 009079 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (544)
Q Consensus 383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 462 (544)
+.++++++.++.+|..+. ++|+.|++++|.++.+.+..|..+++|++|++++|+++.++...|..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777766443 667777777777777666666677777777777777777666656666777777777776
Q ss_pred cCCCCCCCCCCCccCceEeecCCcccccC
Q 009079 463 ASLPENPPFSSLPHLQELYLRRMQLREAP 491 (544)
Q Consensus 463 l~~~~~~~~~~l~~L~~L~ls~n~l~~i~ 491 (544)
++.+.+..|..+++|+.|++++|.+...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 66666666666666777777666665443
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=7.3e-13 Score=113.22 Aligned_cols=108 Identities=20% Similarity=0.220 Sum_probs=95.9
Q ss_pred CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecC
Q 009079 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (544)
Q Consensus 405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 484 (544)
-+.++++++.++.++... .++|++|++++|++..++...|..+++|++|++++|+++.+.+..|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999998887642 38999999999999998888899999999999999999999888889999999999999
Q ss_pred CcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079 485 MQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 485 n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~ 515 (544)
|.++.+|.. +..+++|+.|++++|++...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999988776 7779999999999999997765
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=9.7e-13 Score=112.10 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=93.1
Q ss_pred CCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeec
Q 009079 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483 (544)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 483 (544)
..+.++++++.++.++... .++|+.|++++|++..+....|..+++|++|++++|+++.+.+..|..+++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998877532 3889999999999999887788899999999999999999888888999999999999
Q ss_pred CCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079 484 RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 484 ~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~ 515 (544)
+|.++.+|.. +..+++|+.|++++|+++..+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999988764 6779999999999999886553
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=6.3e-14 Score=135.17 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=128.2
Q ss_pred cccccceeeecCCCccCCC-----chhhcc-CCCccEEEcCCCCCCC--CChhhhcCCCCcEEEccCCCCCCCCHHHH--
Q 009079 354 RLSVTSKELSLEGMNLSAI-----PSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAIL-- 423 (544)
Q Consensus 354 ~~~~~l~~l~l~~~~~~~i-----~~~~~~-~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~~~~l-- 423 (544)
.....++.+++++|.+... ...+.. ++.|++|++++|.++. +......+++|++|++++|.+++.....+
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3446789999999998742 222222 3689999999999876 22223456789999999999987554444
Q ss_pred ---hCCCCCCEEECCCCCCCcCCC----CccCCCCCcceEecCCcccCCCC----CCCCCCCccCceEeecCCcccc---
Q 009079 424 ---TSLSSLSCLKLDNNPLRQVPS----DGFKDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLRE--- 489 (544)
Q Consensus 424 ---~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~--- 489 (544)
...++|++|++++|.+++... ..+..+++|++|++++|.+++.+ ...+..+++|+.|+|++|.|+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 346899999999999976332 23477899999999999887654 3345667899999999999983
Q ss_pred --cCccccCCCCCCeeecCCCCCCC-----CCcccccce--eeeEec--cCCcccccc
Q 009079 490 --APTDILRLQQLRILDLSQNSLQS-----IPEVTYIFV--MLQKKS--INTELVDKN 536 (544)
Q Consensus 490 --i~~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~~~--~L~~l~--l~~n~~~~~ 536 (544)
+...+..+++|++|++++|+++. +.+ +.... .|+.+. +.++.++..
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRD-LGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH-CC------CEEECCCC----CHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH-HhcCCCccchhhHhhhcCCccCHH
Confidence 34455668999999999999983 222 12222 278888 777777643
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.2e-13 Score=133.27 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=113.9
Q ss_pred CCCccEEEcCCCCCCC-----CChhhh-cCCCCcEEEccCCCCCCCCHHH-HhCCCCCCEEECCCCCCCcCCCCcc----
Q 009079 379 AGEITKLDLSRNSIQE-----LPPELS-SCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDGF---- 447 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~-----l~~~~~-~~~~L~~L~l~~~~l~~~~~~~-l~~~~~L~~L~l~~n~i~~~~~~~l---- 447 (544)
.+.+++|++++|.++. +...+. .+++|++|++++|.+++..... ...+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4578899999998876 222222 2368999999999887643322 2345788999999998876443333
Q ss_pred -CCCCCcceEecCCcccCCCCCCCC----CCCccCceEeecCCcccc-----cCccccCCCCCCeeecCCCCCCC-----
Q 009079 448 -KDIPMLQILDLSYNIASLPENPPF----SSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS----- 512 (544)
Q Consensus 448 -~~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~ls~n~l~~-----i~~~~~~~~~L~~L~l~~n~l~~----- 512 (544)
...++|+.|++++|.++..+...+ ..+++|+.|+|++|.++. ++..+..+++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 356789999999998776543333 567889999999998873 34556677889999999999883
Q ss_pred CCcccccceeeeEeccCCccccc
Q 009079 513 IPEVTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 513 l~~~l~~~~~L~~l~l~~n~~~~ 535 (544)
++..+..+++|+.|++++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 44556677889999999998864
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.4e-10 Score=111.44 Aligned_cols=105 Identities=27% Similarity=0.328 Sum_probs=93.8
Q ss_pred cEEEcCCC-CCCCCChhhhcCCCCcEEEccC-CCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079 383 TKLDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (544)
Q Consensus 383 ~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 460 (544)
..++++++ .++.+|. +..+++|++|+|++ |.++.++...|..+++|+.|+|++|+++.++...|..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45788888 8999998 99999999999996 999999888899999999999999999998888899999999999999
Q ss_pred cccCCCCCCCCCCCccCceEeecCCcccc
Q 009079 461 NIASLPENPPFSSLPHLQELYLRRMQLRE 489 (544)
Q Consensus 461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 489 (544)
|+++.+.+..|..++ |+.|+|++|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999998888787766 9999999998873
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.8e-10 Score=110.76 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=94.2
Q ss_pred eeeecCCC-ccCCCchhhccCCCccEEEcCC-CCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 360 KELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 360 ~~l~l~~~-~~~~i~~~~~~~~~L~~L~l~~-~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
..++++++ .+..+|. +..+.+|+.|+|++ |.++.++ ..|..+++|+.|+|++|+++.+++..|..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 56788888 8999999 88889999999996 9999977 4689999999999999999999988899999999999999
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCC
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLP 466 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 466 (544)
|++..++...+..++ |+.|++.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999999888777776 99999999987654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=1e-09 Score=104.81 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=94.7
Q ss_pred ccceeeecCCCccC----------CCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh--
Q 009079 357 VTSKELSLEGMNLS----------AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-- 424 (544)
Q Consensus 357 ~~l~~l~l~~~~~~----------~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-- 424 (544)
++|+.|.+.+.... .+...+..+|.|++|.++++.-..++. + ..++|++|++..|.++......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 46777776554221 233444556778888877663122333 2 367788888777776653333333
Q ss_pred CCCCCCEEECCCC--C-CCc-----CCCCcc--CCCCCcceEecCCcccCCCCCCCC---CCCccCceEeecCCcccc--
Q 009079 425 SLSSLSCLKLDNN--P-LRQ-----VPSDGF--KDIPMLQILDLSYNIASLPENPPF---SSLPHLQELYLRRMQLRE-- 489 (544)
Q Consensus 425 ~~~~L~~L~l~~n--~-i~~-----~~~~~l--~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~ls~n~l~~-- 489 (544)
.+|+|++|+|+.+ . ..+ +. ..+ ..+|+|+.|++.+|.+.+.....+ ..+++|+.|+|+.|.++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 5778888777421 1 111 11 112 246777888777776553221111 246777788887777763
Q ss_pred ---cCccccCCCCCCeeecCCCCCCCC-Cccccc-ceeeeEeccCCcc
Q 009079 490 ---APTDILRLQQLRILDLSQNSLQSI-PEVTYI-FVMLQKKSINTEL 532 (544)
Q Consensus 490 ---i~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~-~~~L~~l~l~~n~ 532 (544)
++..+..+++|+.|++++|.++.- ...+.. + ...++++++.
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 334445577778888877776621 111111 1 2456777766
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=7.2e-10 Score=105.83 Aligned_cols=150 Identities=16% Similarity=0.261 Sum_probs=87.8
Q ss_pred ccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-CChhh--hcCCCCcEEEccCC--C-CCC-----CCHHHH
Q 009079 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPEL--SSCASLQTLILSRN--K-IKD-----WPDAIL 423 (544)
Q Consensus 355 ~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~--~~~~~L~~L~l~~~--~-l~~-----~~~~~l 423 (544)
..+.|++|.++++.-..++. + ..++|+.|++..|.++. ....+ ..+|+|++|+|+.+ . ..+ +.. .+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LF 246 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GS
T ss_pred cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HH
Confidence 34578888887763233333 2 36788888888777654 11122 36788888887531 1 111 111 12
Q ss_pred --hCCCCCCEEECCCCCCCcCCCCcc---CCCCCcceEecCCcccCCCCCCC----CCCCccCceEeecCCccccc-Ccc
Q 009079 424 --TSLSSLSCLKLDNNPLRQVPSDGF---KDIPMLQILDLSYNIASLPENPP----FSSLPHLQELYLRRMQLREA-PTD 493 (544)
Q Consensus 424 --~~~~~L~~L~l~~n~i~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~ls~n~l~~i-~~~ 493 (544)
..+|+|++|++.+|.+.+.....+ ..+++|+.|+++.|.+.+.+... +..+++|+.|++++|.++.- -..
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 247888888888888764211111 34678888888888776644322 23467888888888877621 111
Q ss_pred ccC-CCCCCeeecCCCC
Q 009079 494 ILR-LQQLRILDLSQNS 509 (544)
Q Consensus 494 ~~~-~~~L~~L~l~~n~ 509 (544)
+.. + ...++++.++
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 221 1 3557777765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=4.2e-09 Score=90.65 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=76.3
Q ss_pred ecCccEEecccC-ccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCcccc-----CC
Q 009079 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-----IP 107 (544)
Q Consensus 44 ~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~~-----l~ 107 (544)
.+.|++|++++| .+. .+...+...++|++|++++|.+. .+.+++...++|++|++++|.++. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 567888888887 775 34556777788888888888776 234566667788888888887772 45
Q ss_pred ccccccCCccEEEc--CCCCCcc-----CCcccccCcCCCEEEcCCCccc
Q 009079 108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (544)
Q Consensus 108 ~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 150 (544)
..+...++|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 56677778888888 7777762 3345566678888888887664
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=1.1e-08 Score=88.14 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=87.3
Q ss_pred chhHhhcCCCCCCEEEcCCC-CCC-----CcchhhhCCCCccEEEccCCccc-----cCCccccccCCccEEEcCCCCCc
Q 009079 59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (544)
Q Consensus 59 ~~~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~ 127 (544)
.+...+...+.|++|++++| .+. .+..++...++|++|++++|.++ .+...+...++|++|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34567788888999999888 777 34456777888999999988887 24455667788999999988887
Q ss_pred c-----CCcccccCcCCCEEEc--CCCcccc-----CCccccCCCCceEEEecCCcccc
Q 009079 128 E-----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTV 174 (544)
Q Consensus 128 ~-----~~~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~ 174 (544)
. +...+...++|++|++ ++|.+.. +.+.+...++|++|++++|.+..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3 4456677788999999 7787762 44556667889999998887753
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=6.3e-09 Score=86.87 Aligned_cols=82 Identities=9% Similarity=0.074 Sum_probs=37.9
Q ss_pred CCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCC-CCcCCCCccCCC----CCcceEecCCc-ccCCCCCCCCCCCccC
Q 009079 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDI----PMLQILDLSYN-IASLPENPPFSSLPHL 477 (544)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~----~~L~~L~l~~n-~l~~~~~~~~~~l~~L 477 (544)
.|++||+++|.+++.....+..|++|++|+|++|. |++.....+..+ ++|++|++++| ++++.+...++.+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444444555555555555553 443222222221 24444444444 2444443444445555
Q ss_pred ceEeecCC
Q 009079 478 QELYLRRM 485 (544)
Q Consensus 478 ~~L~ls~n 485 (544)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555555
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=2.7e-07 Score=76.98 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=68.4
Q ss_pred CCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCC-CCCCCCHHHHhCC----CCCCEEECCCCC-CCcCCCCccCCCC
Q 009079 379 AGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVPSDGFKDIP 451 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~----~~L~~L~l~~n~-i~~~~~~~l~~~~ 451 (544)
...|++||+++|.+++. ...+..|++|++|+|++| .+++.....+..+ ++|++|++++|. |++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34799999999998762 234678999999999999 5888666667764 589999999986 8875556677899
Q ss_pred CcceEecCCcc-cCC
Q 009079 452 MLQILDLSYNI-ASL 465 (544)
Q Consensus 452 ~L~~L~l~~n~-l~~ 465 (544)
+|+.|++++|. +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 99999999883 443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=1.9e-06 Score=77.72 Aligned_cols=62 Identities=29% Similarity=0.329 Sum_probs=38.7
Q ss_pred cCCCCCCEEEcCCCCCCCcc---hhhhCCCCccEEEccCCccccCCccccccC--CccEEEcCCCCCc
Q 009079 65 RNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFDCSSNQLK 127 (544)
Q Consensus 65 ~~~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~--~L~~L~l~~~~~~ 127 (544)
.++++|++|+|++|.++.++ ..+..+++|++|+|++|.++.+ ..+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 45677777777777766543 4455677777777777776655 2233333 6677777766665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=2.3e-06 Score=77.19 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=60.6
Q ss_pred ecCccEEecccCcccchh---HhhcCCCCCCEEEcCCCCCCCcchhhhCCC--CccEEEccCCccc-cCCc-------cc
Q 009079 44 AVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLSELPAAIGELH--MLKSLDVSFNSIM-KIPD-------EI 110 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~l~~~~l~-~l~~-------~~ 110 (544)
+++|+.|++++|.+..++ ..+..+++|+.|+|++|.+..+ ..+..+. +|++|++++|.+. .+|+ .+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 578999999999998654 5678999999999999999977 3344444 9999999999987 3442 35
Q ss_pred cccCCccEEE
Q 009079 111 GSATALVKFD 120 (544)
Q Consensus 111 ~~~~~L~~L~ 120 (544)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6778888876
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.01 E-value=6.1e-06 Score=70.23 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=65.7
Q ss_pred ecCccEEecccC-ccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCccc-----cCC
Q 009079 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (544)
Q Consensus 44 ~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~ 107 (544)
.+.|++|+++++ .+. .+.+++...+.|++|+|++|.+. .+.+++...+.|++|+|+.|.|+ .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356777777764 554 24456666777777777777766 44456666677777777777776 233
Q ss_pred ccccccCCccEEEcCCCC---Cc-----cCCcccccCcCCCEEEcCCCc
Q 009079 108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNC 148 (544)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~---~~-----~~~~~~~~~~~L~~L~l~~~~ 148 (544)
+.+...+.|++|+++++. +. .+...+..-+.|++|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 445566667777776542 22 222344556677777776554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.85 E-value=2e-05 Score=67.02 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=80.5
Q ss_pred hhHhhcCCCCCCEEEcCCC-CCC-----CcchhhhCCCCccEEEccCCccc-----cCCccccccCCccEEEcCCCCCc-
Q 009079 60 LKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK- 127 (544)
Q Consensus 60 ~~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~- 127 (544)
+...+.+-+.|++|+++++ .+. .+.+++.....|+.|+|++|.++ .+...+...+.|++|++++|.+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4455677788888998875 666 34567777888899999888887 34455677788899999888887
Q ss_pred ----cCCcccccCcCCCEEEcCCCcc---c-----cCCccccCCCCceEEEecCCccc
Q 009079 128 ----ELPSSLGRCLNLSDFKASNNCI---T-----SLPEDLADCSKMSKLDVEGNKLT 173 (544)
Q Consensus 128 ----~~~~~~~~~~~L~~L~l~~~~~---~-----~~~~~~~~~~~L~~L~l~~~~~~ 173 (544)
.+...+..-+.|++|+++++.. . .+.+.+...++|+.|+++.+.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3334555667788888876532 2 23344566678888888766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00049 Score=54.61 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=32.7
Q ss_pred eEecCCcccC--CCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCC
Q 009079 455 ILDLSYNIAS--LPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 455 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l 513 (544)
.++.+++.++ .+.. . -.++|+.|+|++|.|+.+|... ..+++|+.|+|++|++..-
T Consensus 12 ~v~Cs~~~L~~~~vP~-~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-A--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCS-C--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCC-C--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5666666665 3321 1 1245677777777777665543 3466777777777766643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0027 Score=50.28 Aligned_cols=55 Identities=27% Similarity=0.500 Sum_probs=36.6
Q ss_pred EEEcCCCCCC--CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCC
Q 009079 384 KLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (544)
Q Consensus 384 ~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~ 440 (544)
.++.++..++ .+|..+ .++|++|+|++|.|+.++...|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 566432 245777777777777777666777777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.39 E-value=0.075 Score=39.47 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCC
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 485 (544)
-.++.+...+|.+|.+|+.+.|..+ ++.++..+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566666666666666666654 66666666666666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=92.70 E-value=0.23 Score=36.83 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (544)
Q Consensus 412 ~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n 461 (544)
+..++.+...+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34567777777888888888888653 77787788888888888888765
Done!