Query 009079
Match_columns 544
No_of_seqs 230 out of 2763
Neff 10.9
Searched_HMMs 13730
Date Mon Mar 25 18:21:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009079.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009079hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2omza2 c.10.2.1 (A:33-416) In 100.0 2E-27 1.5E-31 231.4 34.6 342 66-508 42-383 (384)
2 d2omza2 c.10.2.1 (A:33-416) In 100.0 1.1E-27 8.3E-32 233.1 31.7 343 89-532 42-384 (384)
3 d1xkua_ c.10.2.7 (A:) Decorin 99.9 8.9E-24 6.5E-28 198.1 27.1 265 185-511 11-285 (305)
4 d1xkua_ c.10.2.7 (A:) Decorin 99.9 7.7E-24 5.6E-28 198.5 24.9 259 10-288 11-285 (305)
5 d1p9ag_ c.10.2.7 (G:) von Will 99.9 5.1E-22 3.7E-26 181.5 19.3 202 251-513 8-210 (266)
6 d1p9ag_ c.10.2.7 (G:) von Will 99.9 6E-22 4.3E-26 181.0 19.8 200 277-538 12-212 (266)
7 d1ogqa_ c.10.2.8 (A:) Polygala 99.9 3.9E-22 2.9E-26 187.4 16.6 241 46-309 51-302 (313)
8 d1jl5a_ c.10.2.6 (A:) Leucine 99.9 1.4E-19 1E-23 173.2 34.6 312 91-523 38-349 (353)
9 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 1.7E-21 1.2E-25 180.1 19.4 223 277-534 34-261 (284)
10 d1ogqa_ c.10.2.8 (A:) Polygala 99.9 5.7E-22 4.1E-26 186.3 15.0 240 10-264 51-302 (313)
11 d1jl5a_ c.10.2.6 (A:) Leucine 99.9 3.1E-19 2.3E-23 170.6 33.5 201 46-290 39-239 (353)
12 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 4.8E-21 3.5E-25 177.0 17.9 261 210-533 14-281 (284)
13 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 5.1E-19 3.7E-23 157.3 15.8 205 47-261 21-225 (227)
14 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.8 2.7E-21 2E-25 192.3 -0.3 84 91-174 2-98 (460)
15 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.8 7.5E-20 5.5E-24 181.7 10.2 381 10-456 3-459 (460)
16 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 2.3E-18 1.6E-22 153.1 18.6 206 11-239 21-226 (227)
17 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 5.8E-18 4.3E-22 148.0 14.4 163 358-530 47-209 (210)
18 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 1.7E-17 1.3E-21 145.0 17.1 162 46-215 47-208 (210)
19 d2omxa2 c.10.2.1 (A:37-235) In 99.7 1.8E-17 1.3E-21 143.7 16.8 161 67-235 39-199 (199)
20 d2omxa2 c.10.2.1 (A:37-235) In 99.7 2E-17 1.5E-21 143.3 16.2 159 358-526 41-199 (199)
21 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.7 4.4E-18 3.2E-22 146.6 9.9 175 358-537 9-186 (192)
22 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.7 1.9E-17 1.4E-21 142.5 10.7 153 381-535 9-163 (192)
23 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.7 1.8E-16 1.3E-20 142.2 15.6 199 12-246 11-217 (242)
24 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.7 6.3E-17 4.6E-21 145.4 12.3 194 9-214 29-232 (242)
25 d1a9na_ c.10.2.4 (A:) Spliceso 99.6 1.2E-16 8.6E-21 132.5 6.6 132 399-535 14-151 (162)
26 d1a9na_ c.10.2.4 (A:) Spliceso 99.6 7.2E-16 5.3E-20 127.7 8.0 127 377-505 15-146 (162)
27 d1dcea3 c.10.2.2 (A:444-567) R 99.5 1.4E-14 1E-18 113.8 10.9 82 45-127 20-103 (124)
28 d2astb2 c.10.1.3 (B:2136-2419) 99.5 4.2E-15 3.1E-19 136.1 9.2 215 12-240 3-235 (284)
29 d2astb2 c.10.1.3 (B:2136-2419) 99.5 7.8E-15 5.7E-19 134.3 10.9 81 381-461 149-235 (284)
30 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.5 5.8E-17 4.2E-21 153.7 -3.8 85 380-464 158-256 (344)
31 d1dcea3 c.10.2.2 (A:444-567) R 99.5 3.2E-14 2.3E-18 111.7 12.1 101 48-150 1-103 (124)
32 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.5 4.5E-15 3.3E-19 140.5 8.5 132 136-267 157-316 (344)
33 d1m9la_ c.10.3.1 (A:) Outer ar 99.4 4.9E-16 3.6E-20 133.5 -5.3 150 382-538 25-189 (198)
34 d1m9la_ c.10.3.1 (A:) Outer ar 99.4 5.8E-15 4.2E-19 126.8 -0.5 129 45-175 23-155 (198)
35 d2ifga3 c.10.2.7 (A:36-191) Hi 99.3 2.6E-12 1.9E-16 105.2 10.3 112 401-513 6-118 (156)
36 d2ifga3 c.10.2.7 (A:36-191) Hi 99.3 2.7E-12 2E-16 105.0 9.6 109 379-488 7-116 (156)
37 d1koha1 c.10.2.3 (A:201-362) m 98.4 1E-08 7.4E-13 84.0 -2.0 66 400-465 62-129 (162)
38 d1pgva_ c.10.1.1 (A:) Tropomod 98.3 3.6E-07 2.6E-11 74.9 6.0 58 44-101 43-110 (167)
39 d1pgva_ c.10.1.1 (A:) Tropomod 98.2 8.3E-07 6.1E-11 72.6 6.5 85 44-128 14-114 (167)
40 d1koha1 c.10.2.3 (A:201-362) m 98.1 4.7E-07 3.4E-11 73.7 3.3 80 378-457 63-152 (162)
41 d1io0a_ c.10.1.1 (A:) Tropomod 98.0 3.5E-06 2.6E-10 68.8 5.2 41 63-103 41-86 (166)
42 d1io0a_ c.10.1.1 (A:) Tropomod 97.8 1.1E-05 8.1E-10 65.7 6.5 55 44-98 45-109 (166)
No 1
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.96 E-value=2e-27 Score=231.35 Aligned_cols=342 Identities=23% Similarity=0.320 Sum_probs=176.4
Q ss_pred CCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (544)
Q Consensus 66 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 145 (544)
.+.+|++|++++++++++ +.+..+++|++|++++|++++++. +.++++|++|++++|++..++ .++.+++|+.++++
T Consensus 42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~ 118 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF 118 (384)
T ss_dssp HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECC
T ss_pred HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-cccccccccccccc
Confidence 345667777777766665 355666777777777777666653 666777777777777766654 35666677777776
Q ss_pred CCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC
Q 009079 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (544)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~ 225 (544)
++.+..++. ......+.......+.+..+..................... ..+...+.........+
T Consensus 119 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------- 185 (384)
T d2omza2 119 NNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL----KPLANLTTLERLDISSN-------- 185 (384)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC----GGGTTCTTCCEEECCSS--------
T ss_pred ccccccccc-ccccccccccccccccccccccccccccccccccccccchh----hhhcccccccccccccc--------
Confidence 666665533 23334555555554444433221111111111111111000 11122222222222222
Q ss_pred CccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceecc
Q 009079 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (544)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l 305 (544)
.... ......+++++.++++++.++.+........++++++++|.+..++ .+..+++++.+++
T Consensus 186 ---------------~~~~-~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l 248 (384)
T d2omza2 186 ---------------KVSD-ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 248 (384)
T ss_dssp ---------------CCCC-CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred ---------------cccc-ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhcc
Confidence 1111 1223344444444444444444443333334555555555444432 3455566666666
Q ss_pred CCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEE
Q 009079 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385 (544)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L 385 (544)
++|.+..++ .+..+++|+.+
T Consensus 249 ~~n~l~~~~------------------------------------------------------------~~~~~~~L~~L 268 (384)
T d2omza2 249 ANNQISNLA------------------------------------------------------------PLSGLTKLTEL 268 (384)
T ss_dssp CSSCCCCCG------------------------------------------------------------GGTTCTTCSEE
T ss_pred ccCccCCCC------------------------------------------------------------cccccccCCEe
Confidence 655543221 12224455666
Q ss_pred EcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCC
Q 009079 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (544)
Q Consensus 386 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~ 465 (544)
+++++.++.++. +..++.++.+++..|.++.+.. +..+++++.|++++|++.++.. +..+++|++|++++|.++.
T Consensus 269 ~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~ 343 (384)
T d2omza2 269 KLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343 (384)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred eccCcccCCCCc-cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC
Confidence 666555555442 4555666666666666555432 4556666666666666665532 5556666666666666655
Q ss_pred CCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCC
Q 009079 466 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508 (544)
Q Consensus 466 ~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n 508 (544)
+. .++.+++|+.|++++|+++.++. +.++++|+.|+|++|
T Consensus 344 l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 344 VS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp CG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred Ch--hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence 43 35666666666666666666543 556666666666665
No 2
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.96 E-value=1.1e-27 Score=233.14 Aligned_cols=343 Identities=28% Similarity=0.424 Sum_probs=220.7
Q ss_pred CCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEec
Q 009079 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 168 (544)
.+.+|++|+++++.++.+ +.+..+++|++|++++|+++.++ .++++++|++|++++|.+..++ .+..+++|+.|+++
T Consensus 42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~ 118 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF 118 (384)
T ss_dssp HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECC
T ss_pred HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc-cccccccccccccc
Confidence 344566666666666555 34555666666666666665554 2555555555555555555443 24444555555544
Q ss_pred CCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchh
Q 009079 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~ 248 (544)
++.++.+.. ......+.......+.+..+.... .......... ....... ..
T Consensus 119 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~-~~ 170 (384)
T d2omza2 119 NNQITDIDP-------------------------LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSF-GNQVTDL-KP 170 (384)
T ss_dssp SSCCCCCGG-------------------------GTTCTTCSEEEEEEEEECCCGGGT-TCTTCSEEEE-EESCCCC-GG
T ss_pred ccccccccc-------------------------cccccccccccccccccccccccc-cccccccccc-ccccchh-hh
Confidence 444433222 122233333333333333221110 0111111111 0111111 22
Q ss_pred hhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHH
Q 009079 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (544)
Q Consensus 249 l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (544)
+...+.........+.............++.+++++|.+.++++ +..+++|+++++++|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l------------------ 231 (384)
T d2omza2 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQL------------------ 231 (384)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC------------------
T ss_pred hccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCC------------------
Confidence 33444444555555544443333333446666666666665543 34455666666665554
Q ss_pred HhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEE
Q 009079 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408 (544)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 408 (544)
..++ .+..+++++.+++++|.+++++. +..+++|+++
T Consensus 232 -----------------------------------------~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L 268 (384)
T d2omza2 232 -----------------------------------------KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 268 (384)
T ss_dssp -----------------------------------------CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred -----------------------------------------CCcc-hhhcccccchhccccCccCCCCc-ccccccCCEe
Confidence 3332 34557899999999999998764 7889999999
Q ss_pred EccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 409 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
+++++.++.+.+ +..++.++.+.+.+|.+.++.. +..+++++.|++++|+++++. .+..+++|++|++++|.++
T Consensus 269 ~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~ 342 (384)
T d2omza2 269 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS 342 (384)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred eccCcccCCCCc--cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence 999999988765 6889999999999999988643 788999999999999998875 3888999999999999999
Q ss_pred ccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcc
Q 009079 489 EAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTEL 532 (544)
Q Consensus 489 ~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~ 532 (544)
.++ .+..+++|++|++++|+++.+++ +..+++|+.|++++|.
T Consensus 343 ~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 343 DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 384 (384)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCEE
T ss_pred CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCCc
Confidence 886 57889999999999999999876 7999999999999983
No 3
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.92 E-value=8.9e-24 Score=198.06 Aligned_cols=265 Identities=23% Similarity=0.273 Sum_probs=183.3
Q ss_pred ccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCC
Q 009079 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHS 262 (544)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~ 262 (544)
..+.++-++..++.+|..+. +.+++|++++|+++.++. .+..+++|++++++++.+..+ |..+.++++|+.|++++
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 45566666666777776553 567888888888887765 577788888888888887766 45677888888888888
Q ss_pred CcCcccchhcccccccEEEccCCCCCCCCcc-ccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcccc
Q 009079 263 NQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 341 (544)
Q Consensus 263 ~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (544)
|+++.++... ...+..+++.+|.+..++.. +........+....+......
T Consensus 89 n~l~~l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~--------------------------- 140 (305)
T d1xkua_ 89 NQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG--------------------------- 140 (305)
T ss_dssp SCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------------------------
T ss_pred CccCcCccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccC---------------------------
Confidence 8887776543 23577777777777665443 444555555555554332110
Q ss_pred ccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHH
Q 009079 342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421 (544)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~ 421 (544)
..+..+..+++|+.+++++|.++.++.. .+++|++|++++|..+.....
T Consensus 141 -----------------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~ 189 (305)
T d1xkua_ 141 -----------------------------IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAA 189 (305)
T ss_dssp -----------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTG
T ss_pred -----------------------------CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChh
Confidence 1122334456777788888777776654 357788888888777776666
Q ss_pred HHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-------c
Q 009079 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-------I 494 (544)
Q Consensus 422 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-------~ 494 (544)
.|..++++++|++++|.+.+++...+.++++|++|++++|.++.+ +.++..+++|+.|+|++|+|+.++.. .
T Consensus 190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~ 268 (305)
T d1xkua_ 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268 (305)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred Hhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhccCcchh
Confidence 677778888888888888777667777778888888888877766 34677778888888888887766432 2
Q ss_pred cCCCCCCeeecCCCCCC
Q 009079 495 LRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 495 ~~~~~L~~L~l~~n~l~ 511 (544)
...++|+.|++++|++.
T Consensus 269 ~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 269 TKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp TTSCCCSEEECCSSSSC
T ss_pred cccCCCCEEECCCCcCc
Confidence 34677888888888876
No 4
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.92 E-value=7.7e-24 Score=198.51 Aligned_cols=259 Identities=22% Similarity=0.302 Sum_probs=211.5
Q ss_pred hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhh
Q 009079 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI 87 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~ 87 (544)
..+++||++.+++.+|+.+. +++++|++++|.++++++ +|.++++|++|++++|.+..+ |.+|
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f 75 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred cCCEEEecCCCCCccCCCCC---------------CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence 56789999999999997664 359999999999999986 799999999999999999987 5589
Q ss_pred hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCccc---cCCccccCCCCce
Q 009079 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS 163 (544)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~ 163 (544)
.++++|++|++++|+++.+|.. ....+..|...++.+..++. .+.....+..+....+... ..+..+..+++|+
T Consensus 76 ~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~ 153 (305)
T d1xkua_ 76 APLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153 (305)
T ss_dssp TTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred hCCCccCEecccCCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence 9999999999999999998865 34689999999999887765 3556778888888887654 3344577788999
Q ss_pred EEEecCCccccccchhhcCccccceEEcCCCcCCC-CcccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCc
Q 009079 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA 241 (544)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~ 241 (544)
.++++++.+..++.. ..+++++|++.++.... .+..+..++.++.|++++|.+..+ +..+..+++|++|++++|.
T Consensus 154 ~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~ 230 (305)
T d1xkua_ 154 YIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230 (305)
T ss_dssp EEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred ccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence 999999988877654 35789999999988764 356788899999999999999876 4567889999999999999
Q ss_pred CCcCchhhhCCCCCCEEECCCCcCcccchhccc--------ccccEEEccCCCCC
Q 009079 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS 288 (544)
Q Consensus 242 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~L~l~~~~l~ 288 (544)
++.+|..+..+++|+.|++++|+|+.++...+. ..|+.+++++|.+.
T Consensus 231 L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 999988899999999999999999887665443 12455555555443
No 5
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.88 E-value=5.1e-22 Score=181.53 Aligned_cols=202 Identities=24% Similarity=0.239 Sum_probs=158.5
Q ss_pred CCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHH
Q 009079 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (544)
Q Consensus 251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (544)
....+.+++.++++++.+|... +..++.|++++|.+..++. .|.++++|++|++++|.++.++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--------------- 71 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--------------- 71 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---------------
T ss_pred ccCCCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc---------------
Confidence 4455666777777777776543 3457778888877777653 4677777777777777664432
Q ss_pred hhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEE
Q 009079 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409 (544)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ 409 (544)
.+..+++|+.|++++|.++..+..+..+++|+.|+
T Consensus 72 ---------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 106 (266)
T d1p9ag_ 72 ---------------------------------------------VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106 (266)
T ss_dssp ---------------------------------------------CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred ---------------------------------------------ccccccccccccccccccccccccccccccccccc
Confidence 11235678888888888888877788888888999
Q ss_pred ccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc
Q 009079 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489 (544)
Q Consensus 410 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 489 (544)
++++.+..+....+..+++++.|++++|.+..++...+..+++|+.+++++|+++.+.+..|+.+++|+.|+|++|.|+.
T Consensus 107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~ 186 (266)
T d1p9ag_ 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (266)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence 88888888777777888888888888888888887778888888888888888888888888888888888888888888
Q ss_pred cCccccCCCCCCeeecCCCCCCCC
Q 009079 490 APTDILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 490 i~~~~~~~~~L~~L~l~~n~l~~l 513 (544)
+|..+..+++|+.|+|++|++.+-
T Consensus 187 lp~~~~~~~~L~~L~L~~Np~~Cd 210 (266)
T d1p9ag_ 187 IPKGFFGSHLLPFAFLHGNPWLCN 210 (266)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhHCCCCCCCEEEecCCCCCCC
Confidence 888888888888888888888753
No 6
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.88 E-value=6e-22 Score=181.05 Aligned_cols=200 Identities=25% Similarity=0.293 Sum_probs=152.7
Q ss_pred ccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhccc
Q 009079 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356 (544)
Q Consensus 277 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+.+++.+++.++.+|+.+. +++++|++++|.++.++..
T Consensus 12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~---------------------------------------- 49 (266)
T d1p9ag_ 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA---------------------------------------- 49 (266)
T ss_dssp CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG----------------------------------------
T ss_pred CeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHH----------------------------------------
Confidence 5667777778888876654 4677888887777554321
Q ss_pred ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (544)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 436 (544)
.+..+++|++|++++|.++.++. ++.+++|++|++++|+++.... .+..+++|+.|++++
T Consensus 50 ------------------~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~ 109 (266)
T d1p9ag_ 50 ------------------TLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSF 109 (266)
T ss_dssp ------------------GGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCS
T ss_pred ------------------Hhhcccccccccccccccccccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence 23346678888888888887653 4677888888888888876544 357788888888888
Q ss_pred CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (544)
Q Consensus 437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~ 515 (544)
|++..+....+..+++++.|++++|.+..+.+..+..+++|+.+++++|+++.++.. +..+++|++|+|++|+++.+|+
T Consensus 110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~ 189 (266)
T d1p9ag_ 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189 (266)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh
Confidence 888887777778888888888888888888888888888888888888888876544 5568888888888888888887
Q ss_pred ccccceeeeEeccCCcccccccc
Q 009079 516 VTYIFVMLQKKSINTELVDKNQQ 538 (544)
Q Consensus 516 ~l~~~~~L~~l~l~~n~~~~~~~ 538 (544)
.+..+++|+.|+++||++.++++
T Consensus 190 ~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 190 GFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp TTTTTCCCSEEECCSCCBCCSGG
T ss_pred hHCCCCCCCEEEecCCCCCCCcc
Confidence 77788888888888888877654
No 7
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.87 E-value=3.9e-22 Score=187.37 Aligned_cols=241 Identities=25% Similarity=0.345 Sum_probs=195.1
Q ss_pred CccEEecccCccc---chhHhhcCCCCCCEEEcCC-CCCC-CcchhhhCCCCccEEEccCCccccC-CccccccCCccEE
Q 009079 46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKF 119 (544)
Q Consensus 46 ~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L 119 (544)
+++.|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.+..+ +..+..+.+|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 5899999999887 5789999999999999987 6776 7899999999999999999998865 4558899999999
Q ss_pred EcCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCCCc-eEEEecCCccccccchhhcCccccceEEcCCCcC
Q 009079 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (544)
Q Consensus 120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (544)
++++|.+. .+|..+++++.++.+++++|.+. .+|..+..+.++ +.++++++.++......+..+... .+++..+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99998876 67788999999999999999887 677777777776 889999999887766666665444 677777766
Q ss_pred C-CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCcccchhccc
Q 009079 197 N-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQ 274 (544)
Q Consensus 197 ~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 274 (544)
. .+|..+..+++++.++++++.+...+..+..+++++.|++++|.+. .+|..+.++++|+.|++++|++++.
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~------ 283 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------ 283 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE------
T ss_pred cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc------
Confidence 3 4567778888899999998888766667777888999999998888 7888888888888888888877631
Q ss_pred ccccEEEccCCCCCCCCccccCCCCcceeccCCCC
Q 009079 275 LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (544)
Q Consensus 275 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~ 309 (544)
+| .+..+++|+.+++++|+
T Consensus 284 ---------------iP-~~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 284 ---------------IP-QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ---------------CC-CSTTGGGSCGGGTCSSS
T ss_pred ---------------CC-CcccCCCCCHHHhCCCc
Confidence 22 23455666667777765
No 8
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.87 E-value=1.4e-19 Score=173.16 Aligned_cols=312 Identities=25% Similarity=0.291 Sum_probs=173.2
Q ss_pred CCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCC
Q 009079 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (544)
Q Consensus 91 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 170 (544)
.++++|+++++.++.+|+. .++|++|++++|+++.+|.. ..+|+.|+++++.++.+++. .+.|++|++++|
T Consensus 38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n 108 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN 108 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence 3577788888777777743 45677777777777777654 34566777777666655421 134555555555
Q ss_pred ccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhh
Q 009079 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (544)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~ 250 (544)
.+..++. + +.+++|+.++++++.+...+.. ...+..+.+..+..... ..+.
T Consensus 109 ~l~~lp~--~-----------------------~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~-~~l~ 159 (353)
T d1jl5a_ 109 QLEKLPE--L-----------------------QNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-PELQ 159 (353)
T ss_dssp CCSSCCC--C-----------------------TTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CCCT
T ss_pred ccccccc--h-----------------------hhhccceeeccccccccccccc---cccccchhhcccccccc-cccc
Confidence 5554432 2 3344455555544444433222 22333444433333222 1234
Q ss_pred CCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHh
Q 009079 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330 (544)
Q Consensus 251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (544)
.++.++.+.+..+.....+.... ..+.+....+.+..++. +..++.++.++++++....++
T Consensus 160 ~l~~l~~L~l~~n~~~~~~~~~~--~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~---------------- 220 (353)
T d1jl5a_ 160 NLPFLTAIYADNNSLKKLPDLPL--SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP---------------- 220 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCCCCT--TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC----------------
T ss_pred ccccceecccccccccccccccc--ccccccccccccccccc-ccccccccccccccccccccc----------------
Confidence 45556666666555544332211 13344444444443332 455667777777666543221
Q ss_pred hcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEc
Q 009079 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLIL 410 (544)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l 410 (544)
.. ..++..+.+..+.+...+. ..+.+...++
T Consensus 221 -------------------------------------------~~---~~~l~~~~~~~~~~~~~~~---~~~~l~~~~~ 251 (353)
T d1jl5a_ 221 -------------------------------------------DL---PPSLEALNVRDNYLTDLPE---LPQSLTFLDV 251 (353)
T ss_dssp -------------------------------------------SC---CTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred -------------------------------------------cc---ccccccccccccccccccc---cccccccccc
Confidence 10 2245555666655554332 2344555566
Q ss_pred cCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc
Q 009079 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA 490 (544)
Q Consensus 411 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i 490 (544)
..+.+..+.. -.......++..+.+..+. ..+++|++|++++|+++.+. +.+++|+.|++++|.|+++
T Consensus 252 ~~~~~~~l~~----l~~~~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~L~~l 319 (353)
T d1jl5a_ 252 SENIFSGLSE----LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV 319 (353)
T ss_dssp CSSCCSEESC----CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred cccccccccc----ccchhcccccccCcccccc----ccCCCCCEEECCCCccCccc----cccCCCCEEECCCCcCCcc
Confidence 5554443221 1134455666666665543 23677888888888777654 2357888888888888887
Q ss_pred CccccCCCCCCeeecCCCCCCCCCcccccceee
Q 009079 491 PTDILRLQQLRILDLSQNSLQSIPEVTYIFVML 523 (544)
Q Consensus 491 ~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L 523 (544)
|.. +++|++|++++|+++++|+....+..|
T Consensus 320 ~~~---~~~L~~L~L~~N~L~~lp~~~~~L~~L 349 (353)
T d1jl5a_ 320 PEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349 (353)
T ss_dssp CCC---CTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ccc---cCCCCEEECcCCcCCCCCccccccCee
Confidence 753 457888888888888888755554444
No 9
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=1.7e-21 Score=180.15 Aligned_cols=223 Identities=27% Similarity=0.362 Sum_probs=151.3
Q ss_pred ccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcc
Q 009079 277 LSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (544)
Q Consensus 277 L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
+++|++++|+++.+++ .|.++++|++++++++.+..+....+..
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~----------------------------------- 78 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG----------------------------------- 78 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----------------------------------
T ss_pred CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccc-----------------------------------
Confidence 4555555555555443 3566666666666666665544332221
Q ss_pred cccceeeec-CCCccCCC-chhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEE
Q 009079 356 SVTSKELSL-EGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432 (544)
Q Consensus 356 ~~~l~~l~l-~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 432 (544)
...+..+.. ..+.+..+ +..+..+++|++|++++|.+..++. .+..+++|+.+++++|.++.++...|..+++|+.|
T Consensus 79 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L 158 (284)
T d1ozna_ 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (284)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhc
Confidence 112222222 22333333 3334556788888888888776543 46677888888888888888877777888888888
Q ss_pred ECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCC
Q 009079 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQ 511 (544)
Q Consensus 433 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~ 511 (544)
++++|.+..++..+|.++++|+.+++++|+++.+.+..|+.+++|+.|++++|.+..++. .+..+++|+.|++++|++.
T Consensus 159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 888888888777778888888888888888888888888888888888888888886653 4567888888888888888
Q ss_pred CCCcccccceeeeEeccCCcccc
Q 009079 512 SIPEVTYIFVMLQKKSINTELVD 534 (544)
Q Consensus 512 ~l~~~l~~~~~L~~l~l~~n~~~ 534 (544)
+-.+..+...+++.++...+.+.
T Consensus 239 C~C~~~~l~~~l~~~~~~~~~~~ 261 (284)
T d1ozna_ 239 CDCRARPLWAWLQKFRGSSSEVP 261 (284)
T ss_dssp CSGGGHHHHHHHHHCCSEECCCB
T ss_pred CCccchHHHHHHHhCcCCCCceE
Confidence 65555555556666665555544
No 10
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.87 E-value=5.7e-22 Score=186.28 Aligned_cols=240 Identities=25% Similarity=0.366 Sum_probs=205.7
Q ss_pred hcceeEcCCCccc---ccchHHhhcccccCCCCceeeecCccEEeccc-Cccc-chhHhhcCCCCCCEEEcCCCCCCCc-
Q 009079 10 TSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLSEL- 83 (544)
Q Consensus 10 ~~~~l~ls~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~L~~L~l~~~~~~~l- 83 (544)
.++.|||+++.+. .+|+.+.. +++|++|++++ |.+. .+|..+.++++|++|++++|++..+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~-------------L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~ 117 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLAN-------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG-------------CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred EEEEEECCCCCCCCCCCCChHHhc-------------Cccccccccccccccccccccccccccccchhhhccccccccc
Confidence 5889999999887 46665544 68999999997 6777 8999999999999999999999865
Q ss_pred chhhhCCCCccEEEccCCccc-cCCccccccCCccEEEcCCCCCc-cCCcccccCcCC-CEEEcCCCcccc-CCccccCC
Q 009079 84 PAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNL-SDFKASNNCITS-LPEDLADC 159 (544)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L-~~L~l~~~~~~~-~~~~~~~~ 159 (544)
+..+..+.+|+++++++|.+. .+|..+..+++|+.+++++|.+. .+|..+..+..+ +.+.++++.+.. .+..+..+
T Consensus 118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l 197 (313)
T d1ogqa_ 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence 457889999999999999766 67888999999999999999988 788888887776 889999998874 34455554
Q ss_pred CCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEcc
Q 009079 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMG 238 (544)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~ 238 (544)
....+++..+.........+..+++++.+++.++.+...+..+..+++|+.|++++|+++ .+|..+..+++|++|+++
T Consensus 198 -~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls 276 (313)
T d1ogqa_ 198 -NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp -CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence 445799998888877677788899999999999999877778889999999999999999 799999999999999999
Q ss_pred CCcCC-cCchhhhCCCCCCEEECCCCc
Q 009079 239 NNALS-ALPAELGKLSKLGTLDLHSNQ 264 (544)
Q Consensus 239 ~~~~~-~l~~~l~~~~~L~~L~l~~~~ 264 (544)
+|.++ .+|. +..+++|+.+++++|+
T Consensus 277 ~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 277 FNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred CCcccccCCC-cccCCCCCHHHhCCCc
Confidence 99998 6775 5778899999998886
No 11
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.86 E-value=3.1e-19 Score=170.64 Aligned_cols=201 Identities=30% Similarity=0.346 Sum_probs=97.4
Q ss_pred CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 125 (544)
++++|+++++.++.+|+. .++|++|++++|+++.+|+.+ .+|+.|++++|.++.++.. .+.|++|++++|.
T Consensus 39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~ 109 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ 109 (353)
T ss_dssp TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc
Confidence 466666666666666532 345666666666666665432 3566666666655554321 1346666666666
Q ss_pred CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (544)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (544)
+..+|. ++.+++|++++++++.+...+.. ...+..+.+..+..... ..+..
T Consensus 110 l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~-------------------------~~l~~ 160 (353)
T d1jl5a_ 110 LEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-------------------------PELQN 160 (353)
T ss_dssp CSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-------------------------CCCTT
T ss_pred cccccc-hhhhccceeeccccccccccccc---cccccchhhcccccccc-------------------------ccccc
Confidence 655543 34555566666655555444322 22334444433322211 22334
Q ss_pred CCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (544)
Q Consensus 206 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~ 285 (544)
++.++.+.++++.....+... ...+.+...+..+..++. ...++.++.++++++....++.. ...+..+.+..+
T Consensus 161 l~~l~~L~l~~n~~~~~~~~~---~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~--~~~l~~~~~~~~ 234 (353)
T d1jl5a_ 161 LPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN 234 (353)
T ss_dssp CTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSS
T ss_pred cccceeccccccccccccccc---cccccccccccccccccc-ccccccccccccccccccccccc--cccccccccccc
Confidence 444555555555444332211 122334444444443332 34555666666666555443321 223455555555
Q ss_pred CCCCC
Q 009079 286 SLSGL 290 (544)
Q Consensus 286 ~l~~l 290 (544)
.+...
T Consensus 235 ~~~~~ 239 (353)
T d1jl5a_ 235 YLTDL 239 (353)
T ss_dssp CCSCC
T ss_pred ccccc
Confidence 54443
No 12
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.86 E-value=4.8e-21 Score=177.01 Aligned_cols=261 Identities=24% Similarity=0.260 Sum_probs=200.4
Q ss_pred eEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCch-hhhCCCCCCEEECCCCcCcccchhcccc--cccEEEccC-C
Q 009079 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSN-N 285 (544)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~--~L~~L~l~~-~ 285 (544)
..++.++..++.+|..+ .+.+++|++++|.++.+|. .+.++++|++++++++.+..+....... .+..+.... +
T Consensus 14 ~~v~c~~~~L~~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCCCCCCccCCCC--CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 45677788888888766 3678999999999998864 5889999999999999999887766543 367776653 4
Q ss_pred CCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079 286 SLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (544)
Q Consensus 286 ~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (544)
.+..+ +..+.++++|+++++++|.+..+..
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~------------------------------------------------- 122 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGP------------------------------------------------- 122 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-------------------------------------------------
T ss_pred ccccccchhhcccccCCEEecCCcccccccc-------------------------------------------------
Confidence 56555 4447788888888888877643321
Q ss_pred CCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCC
Q 009079 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443 (544)
Q Consensus 365 ~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 443 (544)
..+....+|+.+++++|.++.++. .+..+++|++|++++|.++.+++..|.++++|+++++++|++..+.
T Consensus 123 ---------~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~ 193 (284)
T d1ozna_ 123 ---------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (284)
T ss_dssp ---------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ---------cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence 123336789999999999999764 5788999999999999999998888999999999999999999988
Q ss_pred CCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC-CCCccccccee
Q 009079 444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVM 522 (544)
Q Consensus 444 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~ 522 (544)
...|..+++|++|++++|.+..+.+..|+.+++|+.|++++|.+..--...+-...++.+....+.+. ..|..+. .
T Consensus 194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~---g 270 (284)
T d1ozna_ 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA---G 270 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT---T
T ss_pred hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHc---C
Confidence 88899999999999999999999999999999999999999987732121122234555666666666 3454443 3
Q ss_pred eeEeccCCccc
Q 009079 523 LQKKSINTELV 533 (544)
Q Consensus 523 L~~l~l~~n~~ 533 (544)
....+++.+.+
T Consensus 271 ~~l~~l~~~~l 281 (284)
T d1ozna_ 271 RDLKRLAANDL 281 (284)
T ss_dssp CBGGGSCGGGS
T ss_pred CccccCCHHHC
Confidence 34444444444
No 13
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.79 E-value=5.1e-19 Score=157.34 Aligned_cols=205 Identities=21% Similarity=0.297 Sum_probs=131.0
Q ss_pred ccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCC
Q 009079 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126 (544)
Q Consensus 47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 126 (544)
+..+++..+.+.++. .++.+.+|++|++.+|.++++ +.+..+++|++|++++|.++.++ .+..+++|+++++++|.+
T Consensus 21 ~~~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPL 97 (227)
T ss_dssp HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCC
T ss_pred HHHHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccc
Confidence 344455555554332 334456667777776666666 35666677777777776666553 256666777777776666
Q ss_pred ccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCC
Q 009079 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 206 (544)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 206 (544)
+.++ .++++++|+.++++++....++ .+...+.++.+.++++.+..... +..+++|++|++.+|.+...+ .++.+
T Consensus 98 ~~i~-~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l~~l 172 (227)
T d1h6ua2 98 KNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANL 172 (227)
T ss_dssp SCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred cccc-cccccccccccccccccccccc-hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch-hhccc
Confidence 6553 4556677777777666655442 34555667777776666654332 556667777777777665543 36677
Q ss_pred CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECC
Q 009079 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261 (544)
Q Consensus 207 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~ 261 (544)
++|+.|++++|+++.++ .+..+++|++|++++|++++++. +.++++|+.|+++
T Consensus 173 ~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 173 SKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225 (227)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred ccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence 77777777777777663 36667777777777777777753 6777777777765
No 14
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=2.7e-21 Score=192.27 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=49.7
Q ss_pred CCccEEEccCCcccc--CCccccccCCccEEEcCCCCCc-----cCCcccccCcCCCEEEcCCCcccc-----CCcccc-
Q 009079 91 HMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITS-----LPEDLA- 157 (544)
Q Consensus 91 ~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~- 157 (544)
++|++|++++++++. +.+.+..+++++.|++++|.++ .+...+..+++|++|++++|.+.. +.+.+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 357788888887773 3344667777788888877766 223345566667777777666541 112222
Q ss_pred CCCCceEEEecCCcccc
Q 009079 158 DCSKMSKLDVEGNKLTV 174 (544)
Q Consensus 158 ~~~~L~~L~l~~~~~~~ 174 (544)
...+|++|++++|.++.
T Consensus 82 ~~~~L~~L~L~~n~it~ 98 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTG 98 (460)
T ss_dssp TTCCCCEEECTTSCCBG
T ss_pred CCCCCCEEECCCCCccc
Confidence 12356666666665543
No 15
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=7.5e-20 Score=181.69 Aligned_cols=381 Identities=19% Similarity=0.177 Sum_probs=226.5
Q ss_pred hcceeEcCCCcccccc-hHHhhcccccCCCCceeeecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCCC-
Q 009079 10 TSGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE- 82 (544)
Q Consensus 10 ~~~~l~ls~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~- 82 (544)
.+++||++++++.+.. .+++.. ++++++|++++|.++ .+..++..+++|++|++++|.+++
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~------------l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~ 70 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV 70 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH
T ss_pred CCCEEEeeCCcCChHHHHHHHHh------------CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH
Confidence 5789999999988532 222222 577999999999887 345678899999999999998863
Q ss_pred ----cchhhh-CCCCccEEEccCCcccc-----CCccccccCCccEEEcCCCCCccCC-----cccc-cCcCCCEEEcCC
Q 009079 83 ----LPAAIG-ELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKELP-----SSLG-RCLNLSDFKASN 146 (544)
Q Consensus 83 ----l~~~~~-~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~-~~~~L~~L~l~~ 146 (544)
+.+.+. ...+|++|++++|.+++ ++..+..+++|++|++++|.++..+ ..+. ............
T Consensus 71 ~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~ 150 (460)
T d1z7xw1 71 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 150 (460)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc
Confidence 223332 24579999999998873 3456778899999999999876321 1111 122233333333
Q ss_pred Ccccc-----CCccccCCCCceEEEecCCccccccc-----hhhcCccccceEEcCCCcCCCC-----cccccCCCceeE
Q 009079 147 NCITS-----LPEDLADCSKMSKLDVEGNKLTVLSN-----NLIASWTMLTELIASKNLLNGM-----PETIGSLSRLIR 211 (544)
Q Consensus 147 ~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~~~~L~~ 211 (544)
..... +...+.....++.+.++++....... ...........+.+.++..... ...+...+.++.
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (460)
T d1z7xw1 151 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230 (460)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred cccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 33221 11223445677888887776542211 1112223455666666655322 123455667778
Q ss_pred EEccCCccc------cCCcCCccCCCCCEEEccCCcCCc-----CchhhhCCCCCCEEECCCCcCcccchhc-------c
Q 009079 212 LDLHQNRIL------SIPSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEA-------C 273 (544)
Q Consensus 212 L~l~~~~~~------~l~~~~~~~~~L~~l~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~-------~ 273 (544)
++++++.+. ...........++.+++++|.+.. ....+...+.++.+++++|.+....... .
T Consensus 231 l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~ 310 (460)
T d1z7xw1 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 310 (460)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred cchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccc
Confidence 888777654 112234456677788888777662 2334556777777787777765321111 1
Q ss_pred cccccEEEccCCCCCCC-----CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhh
Q 009079 274 QLRLSVLDLSNNSLSGL-----PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348 (544)
Q Consensus 274 ~~~L~~L~l~~~~l~~l-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (544)
...|+.++++++.+... ...+..+++|++|++++|.+...+
T Consensus 311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g---------------------------------- 356 (460)
T d1z7xw1 311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG---------------------------------- 356 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH----------------------------------
T ss_pred ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc----------------------------------
Confidence 12355666655554431 112234445555555555442110
Q ss_pred hhhhhcccccceeeecCCCccCCCchhhc-cCCCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCCHHH
Q 009079 349 ITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAI 422 (544)
Q Consensus 349 ~~~~~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~~~~ 422 (544)
+..++..+. ..+.|++|++++|.+++ ++..+..+++|++|++++|.+++.....
T Consensus 357 --------------------~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~ 416 (460)
T d1z7xw1 357 --------------------VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416 (460)
T ss_dssp --------------------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred --------------------cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHH
Confidence 001222332 24578999999999875 4555778899999999999988643332
Q ss_pred ----Hh-CCCCCCEEECCCCCCCcCCCCc----cCCCCCcceE
Q 009079 423 ----LT-SLSSLSCLKLDNNPLRQVPSDG----FKDIPMLQIL 456 (544)
Q Consensus 423 ----l~-~~~~L~~L~l~~n~i~~~~~~~----l~~~~~L~~L 456 (544)
+. ....|+.|++.++.+....... ....|+|+.|
T Consensus 417 l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp HHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 22 2347999999999887422221 2345666654
No 16
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.79 E-value=2.3e-18 Score=153.08 Aligned_cols=206 Identities=19% Similarity=0.313 Sum_probs=171.1
Q ss_pred cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCC
Q 009079 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (544)
Q Consensus 11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~ 90 (544)
+..++++.+.+.++... +. +.+|++|++.++.++.++ .+.++++|++|++++|.++.++ .+..+
T Consensus 21 ~~~~~l~~~~~~d~~~~--~~------------l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l 84 (227)
T d1h6ua2 21 AIKIAAGKSNVTDTVTQ--AD------------LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNL 84 (227)
T ss_dssp HHHHHTTCSSTTSEECH--HH------------HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred HHHHHhCCCCcCCcCCH--HH------------cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-ccccc
Confidence 34556777776654421 11 467999999999999884 6899999999999999998875 58899
Q ss_pred CCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCC
Q 009079 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (544)
Q Consensus 91 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 170 (544)
++|+++++++|.++.++ .+..+++|+.++++++....++ .+...+.++.+.++.+.+.... .+...++|++|+++++
T Consensus 85 ~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n 161 (227)
T d1h6ua2 85 TKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNA 161 (227)
T ss_dssp CSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS
T ss_pred ccccccccccccccccc-cccccccccccccccccccccc-hhccccchhhhhchhhhhchhh-hhcccccccccccccc
Confidence 99999999999988774 5788999999999998877663 4667889999999998887653 4677899999999999
Q ss_pred ccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccC
Q 009079 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239 (544)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~ 239 (544)
.+..... +.++++|++|++++|.+++++. +..+++|++|++++|+++.++ .+..+++|+.|++++
T Consensus 162 ~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 162 QVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred ccccchh--hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence 8876554 7889999999999999988854 788999999999999999885 478899999999874
No 17
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.75 E-value=5.8e-18 Score=148.02 Aligned_cols=163 Identities=25% Similarity=0.338 Sum_probs=143.3
Q ss_pred cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (544)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 437 (544)
+++.++++++.+..++ .+..+++|++|++++|++++++. ++.+++|+.|++++|++++++. +..+++|+.|++++|
T Consensus 47 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~ 122 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN 122 (210)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS
T ss_pred CccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccc--ccccccccccccccc
Confidence 6889999999998876 46778999999999999999874 6889999999999999998763 788999999999999
Q ss_pred CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCccc
Q 009079 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVT 517 (544)
Q Consensus 438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l 517 (544)
.+..+. .+..++.++.+++++|.++... .+..+++|+.+++++|.++.++. +.++++|++|++++|+++.+++ +
T Consensus 123 ~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~-l 196 (210)
T d1h6ta2 123 GISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-L 196 (210)
T ss_dssp CCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred cccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChh-h
Confidence 988764 4788999999999999887653 47788999999999999998854 7889999999999999999874 8
Q ss_pred ccceeeeEeccCC
Q 009079 518 YIFVMLQKKSINT 530 (544)
Q Consensus 518 ~~~~~L~~l~l~~ 530 (544)
..+++|+.|++++
T Consensus 197 ~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 197 AGLKNLDVLELFS 209 (210)
T ss_dssp TTCTTCSEEEEEE
T ss_pred cCCCCCCEEEccC
Confidence 9999999999875
No 18
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.75 E-value=1.7e-17 Score=144.99 Aligned_cols=162 Identities=23% Similarity=0.357 Sum_probs=84.7
Q ss_pred CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (544)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 125 (544)
++++|+++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++.++ .+..+++|+.|+++++.
T Consensus 47 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~ 123 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG 123 (210)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC
T ss_pred CccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccccc
Confidence 4566666666555543 3555666666666666655554 3455566666666666555554 35555566666665555
Q ss_pred CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (544)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (544)
+..++ .+..++.++.++++++.+...+ .+..+++|+.+++++|.++.+.. +.++++|++|++++|.+++++ .+..
T Consensus 124 ~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~ 198 (210)
T d1h6ta2 124 ISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAG 198 (210)
T ss_dssp CCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTT
T ss_pred ccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh-hhcC
Confidence 55442 3445555555555555554432 23444555555555555544332 444445555555555444443 3444
Q ss_pred CCceeEEEcc
Q 009079 206 LSRLIRLDLH 215 (544)
Q Consensus 206 ~~~L~~L~l~ 215 (544)
+++|++|+++
T Consensus 199 l~~L~~L~Ls 208 (210)
T d1h6ta2 199 LKNLDVLELF 208 (210)
T ss_dssp CTTCSEEEEE
T ss_pred CCCCCEEEcc
Confidence 4445544443
No 19
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.75 E-value=1.8e-17 Score=143.66 Aligned_cols=161 Identities=23% Similarity=0.372 Sum_probs=85.2
Q ss_pred CCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCC
Q 009079 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 146 (544)
Q Consensus 67 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 146 (544)
++++++|+++++.+.++. .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+++++.|+.+++++
T Consensus 39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~ 115 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN 115 (199)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccccccc
Confidence 345555555555555442 34445555555555555554432 455555555555555554443 244555555555555
Q ss_pred CccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCC
Q 009079 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226 (544)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 226 (544)
+....++ .+..+++|+.|++++|.+..++. +..++++++|++.+|.+++++ .++.+++|++|++++|+++.++ .+
T Consensus 116 ~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l 190 (199)
T d2omxa2 116 NQITDID-PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-VL 190 (199)
T ss_dssp SCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred ccccccc-ccchhhhhHHhhhhhhhhccccc--ccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-cc
Confidence 5444432 34455555566655555554432 555556666666666555553 3556666666666666666553 35
Q ss_pred ccCCCCCEE
Q 009079 227 SGCCSLAEF 235 (544)
Q Consensus 227 ~~~~~L~~l 235 (544)
..+++|+.|
T Consensus 191 ~~L~~L~~L 199 (199)
T d2omxa2 191 AKLTNLESL 199 (199)
T ss_dssp GGCTTCSEE
T ss_pred cCCCCCCcC
Confidence 555665543
No 20
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.74 E-value=2e-17 Score=143.27 Aligned_cols=159 Identities=25% Similarity=0.371 Sum_probs=108.3
Q ss_pred cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (544)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 437 (544)
.++++++.++++..++ ++..+++|++|++++|.++++++ +..+++|++|++++|.+..++. +..+++|+.|++++|
T Consensus 41 ~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~ 116 (199)
T d2omxa2 41 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 116 (199)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc--ccccccccccccccc
Confidence 5667777777776653 35566777777777777777654 6677777777777777666553 567777777777777
Q ss_pred CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCccc
Q 009079 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVT 517 (544)
Q Consensus 438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l 517 (544)
.+..+. .+..+++|+.|++++|++..+ ..+..+++|+.|++++|.++.++ .+.++++|+.|++++|+++.++. +
T Consensus 117 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~-l 190 (199)
T d2omxa2 117 QITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDISV-L 190 (199)
T ss_dssp CCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred cccccc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCcc-c
Confidence 766553 256677777777777766554 24666777777777777777664 35667777777777777777653 5
Q ss_pred ccceeeeEe
Q 009079 518 YIFVMLQKK 526 (544)
Q Consensus 518 ~~~~~L~~l 526 (544)
..+++|+.|
T Consensus 191 ~~L~~L~~L 199 (199)
T d2omxa2 191 AKLTNLESL 199 (199)
T ss_dssp GGCTTCSEE
T ss_pred cCCCCCCcC
Confidence 666666654
No 21
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.73 E-value=4.4e-18 Score=146.63 Aligned_cols=175 Identities=20% Similarity=0.199 Sum_probs=144.2
Q ss_pred cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-C-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-L-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (544)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 435 (544)
..+++++++++++.+|.++ .+.+++|++++|.++. + +..|..+++|++|++++|.+..+....|..+++|+.|+++
T Consensus 9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 4567889999999999877 3689999999999976 4 3457889999999999999999888889999999999999
Q ss_pred CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCC-CC
Q 009079 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS-IP 514 (544)
Q Consensus 436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~-l~ 514 (544)
+|++..++..+|.++++|++|++++|.++.+.+.+|..+++|++|+|++|.+.......+-...++.+.+..+.++. .|
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence 99999998888999999999999999999999999999999999999999887543332323346677777777773 35
Q ss_pred cccccceeeeEeccCCccccccc
Q 009079 515 EVTYIFVMLQKKSINTELVDKNQ 537 (544)
Q Consensus 515 ~~l~~~~~L~~l~l~~n~~~~~~ 537 (544)
. .+..++.++++.|.+.+..
T Consensus 167 ~---~l~~~~l~~L~~n~l~C~~ 186 (192)
T d1w8aa_ 167 S---KVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp T---TTTTSBGGGSCTTTCCCCC
T ss_pred h---hhcCCEeeecCHhhCcCCC
Confidence 4 4556677899999887654
No 22
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.70 E-value=1.9e-17 Score=142.53 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=135.2
Q ss_pred CccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (544)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 459 (544)
..+.++.++++++.+|..+ .+++++|+|++|.|+. +....|..+++|++|++++|.+..++...+..+++|++|+++
T Consensus 9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 4568999999999999865 3789999999999986 667778999999999999999999988999999999999999
Q ss_pred CcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccccc
Q 009079 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~ 535 (544)
+|+++.+.+.+|+++++|+.|+|++|.|+.+|.. |..+++|++|++++|++...++..+...+++...+..+.+.+
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c 163 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC 163 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe
Confidence 9999999999999999999999999999988655 567999999999999999776666666678888888777653
No 23
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=1.8e-16 Score=142.25 Aligned_cols=199 Identities=14% Similarity=0.215 Sum_probs=101.5
Q ss_pred ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCC-cc-hhhh
Q 009079 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LP-AAIG 88 (544)
Q Consensus 12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~-l~-~~~~ 88 (544)
++++|++..++.+|+.++ +++++|+++++.++.++. +|.++++|++|++++|.+.. ++ .+|.
T Consensus 11 ~~i~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~ 75 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 75 (242)
T ss_dssp SEEEEESCSCSSCCSCSC---------------SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred CEEEEeCCCCCCcCCCCC---------------CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc
Confidence 456666666666665443 236666666666666554 45666666666666665543 22 2455
Q ss_pred CCCCccEEEccC-CccccCC-ccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEE
Q 009079 89 ELHMLKSLDVSF-NSIMKIP-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166 (544)
Q Consensus 89 ~~~~L~~L~l~~-~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 166 (544)
++++++++.+.. +.+..++ ..+.++++|+.++++++.+...+. +. .+..++.++.+.
T Consensus 76 ~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~--------------------~~~~l~~l~~~~ 134 (242)
T d1xwdc1 76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VH--------------------KIHSLQKVLLDI 134 (242)
T ss_dssp SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CT--------------------TTCBSSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccchhhhccccc-cc--------------------cccccccccccc
Confidence 666666666543 2444332 335555666666665555543321 11 112233344444
Q ss_pred ecCCccccccchhhcCcc-ccceEEcCCCcCCCCcccccCCCceeEEE-ccCCccccCCc-CCccCCCCCEEEccCCcCC
Q 009079 167 VEGNKLTVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRLD-LHQNRILSIPS-SISGCCSLAEFYMGNNALS 243 (544)
Q Consensus 167 l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~ 243 (544)
..++.+..+....+.+++ .++.+++.++.++.++.......+++++. ++++.++.++. .+..+++|+.|++++|+++
T Consensus 135 ~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 214 (242)
T ss_dssp ESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred ccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence 444444444444444433 45555555555555444333344444332 34455555543 2455555666666555555
Q ss_pred cCc
Q 009079 244 ALP 246 (544)
Q Consensus 244 ~l~ 246 (544)
.+|
T Consensus 215 ~l~ 217 (242)
T d1xwdc1 215 SLP 217 (242)
T ss_dssp CCC
T ss_pred ccC
Confidence 554
No 24
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=6.3e-17 Score=145.36 Aligned_cols=194 Identities=20% Similarity=0.267 Sum_probs=136.3
Q ss_pred hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccc-hh-HhhcCCCCCCEEEcCC-CCCCCc-c
Q 009079 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LK-EDLRNLPLLTVLNVSH-NKLSEL-P 84 (544)
Q Consensus 9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~~L~~L~l~~-~~~~~l-~ 84 (544)
+.+++||+++|.++.+|.+.+++ +++|++|++++|.+.. ++ ..|.++++++++.+.. +.+..+ +
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~------------l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~ 96 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSG------------FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 96 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTT------------CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred CCCCEEECcCCcCCccChhHhhc------------cchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence 47899999999999999877766 6789999999998874 43 4788999999999875 566655 4
Q ss_pred hhhhCCCCccEEEccCCccccCCc--cccccCCccEEEcCCCCCccCCc-ccccC-cCCCEEEcCCCccccCCccccCCC
Q 009079 85 AAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELPS-SLGRC-LNLSDFKASNNCITSLPEDLADCS 160 (544)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 160 (544)
..|.++++|++++++++.+...+. .+..+..+..+...++.+..++. .+..+ ..++.++++++.++.++.......
T Consensus 97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~ 176 (242)
T d1xwdc1 97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT 176 (242)
T ss_dssp TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC
T ss_pred ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccch
Confidence 578999999999999999886643 34556677777777777776543 33333 367777777777776665555555
Q ss_pred CceEEE-ecCCccccccchhhcCccccceEEcCCCcCCCCcc-cccCCCceeEEEc
Q 009079 161 KMSKLD-VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDL 214 (544)
Q Consensus 161 ~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l 214 (544)
++.++. ++++.++.++...|.++++|++|++++|.++.+|. .+.++++|+.+++
T Consensus 177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence 655554 45556666666666666666666666666665543 3444554544443
No 25
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=1.2e-16 Score=132.55 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=91.2
Q ss_pred hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCc
Q 009079 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478 (544)
Q Consensus 399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 478 (544)
+.++..+++|++++|+|+.++. .+..+++|++|++++|++..++ .+..+++|+.|++++|.++.+.+..++.+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence 4455667777777777776643 2456677777777777777663 366777777777777777776666566677777
Q ss_pred eEeecCCcccccCc--cccCCCCCCeeecCCCCCCCCCc----ccccceeeeEeccCCccccc
Q 009079 479 ELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPE----VTYIFVMLQKKSINTELVDK 535 (544)
Q Consensus 479 ~L~ls~n~l~~i~~--~~~~~~~L~~L~l~~n~l~~l~~----~l~~~~~L~~l~l~~n~~~~ 535 (544)
.|++++|.++.+++ .+..+++|+.|++++|+++..|. .+..+|+|+.|| +.++..
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~ 151 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKL 151 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCH
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCH
Confidence 77777777776643 45667888888888888876664 367778888777 445543
No 26
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.60 E-value=7.2e-16 Score=127.71 Aligned_cols=127 Identities=23% Similarity=0.255 Sum_probs=103.3
Q ss_pred ccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (544)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 456 (544)
..+.++++|++++|+++.++..+..+++|+.|++++|.++.++. +..+++|++|++++|+++.++...+..+++|+.|
T Consensus 15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccccccc
Confidence 34567888999999888887766778889999999998887743 6788899999999999888877667778899999
Q ss_pred ecCCcccCCCCC-CCCCCCccCceEeecCCcccccCc----cccCCCCCCeeec
Q 009079 457 DLSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPT----DILRLQQLRILDL 505 (544)
Q Consensus 457 ~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~i~~----~~~~~~~L~~L~l 505 (544)
++++|+++.+.. ..+..+++|+.|++++|.++..|. .+..+|+|+.||-
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 999998877643 567888999999999998887764 3667899998873
No 27
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.55 E-value=1.4e-14 Score=113.83 Aligned_cols=82 Identities=27% Similarity=0.330 Sum_probs=41.5
Q ss_pred cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCc--cccccCCccEEEcC
Q 009079 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCS 122 (544)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~ 122 (544)
++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 20 ~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~ 98 (124)
T d1dcea3 20 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98 (124)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECC
Confidence 4455555555555555544555555555555555555543 34455555555555555554432 34445555555555
Q ss_pred CCCCc
Q 009079 123 SNQLK 127 (544)
Q Consensus 123 ~~~~~ 127 (544)
+|.++
T Consensus 99 ~N~i~ 103 (124)
T d1dcea3 99 GNSLC 103 (124)
T ss_dssp TSGGG
T ss_pred CCcCC
Confidence 55444
No 28
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55 E-value=4.2e-15 Score=136.09 Aligned_cols=215 Identities=16% Similarity=0.209 Sum_probs=107.0
Q ss_pred ceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCC--Ccchhhh
Q 009079 12 GSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG 88 (544)
Q Consensus 12 ~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~ 88 (544)
+++|++++.+. ++..++.. ..+..+.++...+...........+|++||++++.++ .+...+.
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~--------------~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~ 68 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS--------------QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 68 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH--------------TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred CEEECCCCCCCchHHHHHHh--------------ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHH
Confidence 47899988764 22223322 1244555555444332223334457777777777665 2344566
Q ss_pred CCCCccEEEccCCccc-cCCccccccCCccEEEcCCC-CCcc--CCcccccCcCCCEEEcCCCc-cc--cCCccc-cCCC
Q 009079 89 ELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNC-IT--SLPEDL-ADCS 160 (544)
Q Consensus 89 ~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~-~~--~~~~~~-~~~~ 160 (544)
++++|++|++++|.++ ..+..+..+++|++|+++++ .+++ +.....++++|++|++++|. +. .+...+ ..++
T Consensus 69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~ 148 (284)
T d2astb2 69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 148 (284)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence 7777777777777665 33445666777777777764 3431 21223456667777666653 22 111111 1235
Q ss_pred CceEEEecCCc--cccccc-hhhcCccccceEEcCCCc-CC-CCcccccCCCceeEEEccCC-ccc-cCCcCCccCCCCC
Q 009079 161 KMSKLDVEGNK--LTVLSN-NLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQN-RIL-SIPSSISGCCSLA 233 (544)
Q Consensus 161 ~L~~L~l~~~~--~~~~~~-~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~-~~~-~l~~~~~~~~~L~ 233 (544)
+|+.|+++++. ++.... ....++++|++|++++|. ++ .....+..+++|++|++++| .++ .....+..+++|+
T Consensus 149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~ 228 (284)
T d2astb2 149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228 (284)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence 66666666542 221111 112345556666655543 22 12234445555555555553 222 1112233444444
Q ss_pred EEEccCC
Q 009079 234 EFYMGNN 240 (544)
Q Consensus 234 ~l~l~~~ 240 (544)
.|++.++
T Consensus 229 ~L~l~~~ 235 (284)
T d2astb2 229 TLQVFGI 235 (284)
T ss_dssp EEECTTS
T ss_pred EEeeeCC
Confidence 4444443
No 29
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55 E-value=7.8e-15 Score=134.27 Aligned_cols=81 Identities=26% Similarity=0.242 Sum_probs=39.8
Q ss_pred CccEEEcCCCC--CCC--CChhhhcCCCCcEEEccCC-CCCCCCHHHHhCCCCCCEEECCCCC-CCcCCCCccCCCCCcc
Q 009079 381 EITKLDLSRNS--IQE--LPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQ 454 (544)
Q Consensus 381 ~L~~L~l~~~~--l~~--l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~L~ 454 (544)
.|+.|+++++. +++ +......+++|++|++++| .+++.....+..+++|++|++++|. +++.....+..+|+|+
T Consensus 149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~ 228 (284)
T d2astb2 149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228 (284)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence 45555555431 222 2222344555666666554 3444444445555666666665543 4433333345555666
Q ss_pred eEecCCc
Q 009079 455 ILDLSYN 461 (544)
Q Consensus 455 ~L~l~~n 461 (544)
.|+++++
T Consensus 229 ~L~l~~~ 235 (284)
T d2astb2 229 TLQVFGI 235 (284)
T ss_dssp EEECTTS
T ss_pred EEeeeCC
Confidence 6666554
No 30
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.54 E-value=5.8e-17 Score=153.74 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=37.2
Q ss_pred CCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCC-----HHHHhCCCCCCEEECCCCCCCcCC----CC
Q 009079 380 GEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWP-----DAILTSLSSLSCLKLDNNPLRQVP----SD 445 (544)
Q Consensus 380 ~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~-----~~~l~~~~~L~~L~l~~n~i~~~~----~~ 445 (544)
+.++.+.++++.++. +...+..++.|++|++++|.+++.. ...+..+++|++|++++|.++... ..
T Consensus 158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~ 237 (344)
T d2ca6a1 158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237 (344)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence 445555555554442 2223344455555555555544311 112334455555555555543211 11
Q ss_pred ccCCCCCcceEecCCcccC
Q 009079 446 GFKDIPMLQILDLSYNIAS 464 (544)
Q Consensus 446 ~l~~~~~L~~L~l~~n~l~ 464 (544)
.+..++.|++|++++|.++
T Consensus 238 ~l~~~~~L~~L~Ls~n~i~ 256 (344)
T d2ca6a1 238 ALKSWPNLRELGLNDCLLS 256 (344)
T ss_dssp HGGGCTTCCEEECTTCCCC
T ss_pred cccccccchhhhhhcCccC
Confidence 2334444444444444433
No 31
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.53 E-value=3.2e-14 Score=111.69 Aligned_cols=101 Identities=29% Similarity=0.427 Sum_probs=50.7
Q ss_pred cEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCc
Q 009079 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127 (544)
Q Consensus 48 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 127 (544)
|.|+++++.++.++ .+.++++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|+++
T Consensus 1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~ 78 (124)
T d1dcea3 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ 78 (124)
T ss_dssp SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence 34555555555443 245555555555555555555555555555555555555555543 2445555555555555554
Q ss_pred cCCc--ccccCcCCCEEEcCCCccc
Q 009079 128 ELPS--SLGRCLNLSDFKASNNCIT 150 (544)
Q Consensus 128 ~~~~--~~~~~~~L~~L~l~~~~~~ 150 (544)
.++. .++.+++|+.+++++|.+.
T Consensus 79 ~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 79 QSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCchhhcCCCCCCEEECCCCcCC
Confidence 4431 2344444444444444443
No 32
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.53 E-value=4.5e-15 Score=140.47 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=71.6
Q ss_pred CcCCCEEEcCCCccc-----cCCccccCCCCceEEEecCCccccc-----cchhhcCccccceEEcCCCcCCC-----Cc
Q 009079 136 CLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLLNG-----MP 200 (544)
Q Consensus 136 ~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~ 200 (544)
.+.|+.+.++++.+. .+...+..+++|++|++++|.+... ....+..+++|+.|++++|.++. +.
T Consensus 157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~ 236 (344)
T d2ca6a1 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 236 (344)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence 445666666655543 1222344456677777766665421 12224455566666666665531 23
Q ss_pred ccccCCCceeEEEccCCcccc-----CCcCCc--cCCCCCEEEccCCcCC-----cCchhhh-CCCCCCEEECCCCcCcc
Q 009079 201 ETIGSLSRLIRLDLHQNRILS-----IPSSIS--GCCSLAEFYMGNNALS-----ALPAELG-KLSKLGTLDLHSNQLKE 267 (544)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~-----l~~~~~--~~~~L~~l~l~~~~~~-----~l~~~l~-~~~~L~~L~l~~~~i~~ 267 (544)
..+..+++|++|++++|.++. +...+. ..+.|++|++++|.+. .+...+. ++++|+.|++++|.+..
T Consensus 237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 445566677777777776651 111221 2345777777777665 1233342 46677777777776653
No 33
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.45 E-value=4.9e-16 Score=133.55 Aligned_cols=150 Identities=24% Similarity=0.268 Sum_probs=109.9
Q ss_pred ccEEEcCCC--CCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079 382 ITKLDLSRN--SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (544)
Q Consensus 382 L~~L~l~~~--~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 459 (544)
.+.+++.+. .+..++..+..+++|++|++++|.|++++. +..+++|+.|++++|++.+++.. ...+++|+.|+++
T Consensus 25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~ 101 (198)
T d1m9la_ 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWIS 101 (198)
T ss_dssp CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECS
T ss_pred cceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccccc-ccccccccccccc
Confidence 444555543 355566778888888888888888887753 67788888888888888776532 3445678888888
Q ss_pred CcccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCC-c----------ccccceeeeEe
Q 009079 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIP-E----------VTYIFVMLQKK 526 (544)
Q Consensus 460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~-~----------~l~~~~~L~~l 526 (544)
+|.++.+. .+..+++|+.|++++|.++.++ ..+..+++|+.|++++|++...+ . .+..+|+|+.|
T Consensus 102 ~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L 179 (198)
T d1m9la_ 102 YNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred cccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe
Confidence 88887663 3677888999999999888765 34677899999999999887331 1 15678889988
Q ss_pred ccCCcccccccc
Q 009079 527 SINTELVDKNQQ 538 (544)
Q Consensus 527 ~l~~n~~~~~~~ 538 (544)
| +.+++..+.
T Consensus 180 D--~~~I~~~er 189 (198)
T d1m9la_ 180 D--GMPVDVDER 189 (198)
T ss_dssp S--SGGGTTTTT
T ss_pred C--CccCCHHHH
Confidence 7 777766553
No 34
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.42 E-value=5.8e-15 Score=126.76 Aligned_cols=129 Identities=28% Similarity=0.310 Sum_probs=107.6
Q ss_pred cCccEEecccC--cccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcC
Q 009079 45 VDLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (544)
Q Consensus 45 ~~L~~L~l~~~--~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 122 (544)
...+.+++++. .++.++.++..+++|++|++++|.++.++ .+..+++|++|++++|.++.++.....+++|+.|+++
T Consensus 23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~ 101 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccc
Confidence 44666777764 56788889999999999999999999885 6888999999999999999888767777889999999
Q ss_pred CCCCccCCcccccCcCCCEEEcCCCccccCC--ccccCCCCceEEEecCCccccc
Q 009079 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVL 175 (544)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 175 (544)
+|+++.++ .+..+++|++|++++|.+..++ ..+..+++|+.|++++|++...
T Consensus 102 ~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred cccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 99988774 5778899999999999888765 3578889999999999887643
No 35
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.33 E-value=2.6e-12 Score=105.16 Aligned_cols=112 Identities=20% Similarity=0.169 Sum_probs=94.0
Q ss_pred cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCC-CCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCce
Q 009079 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479 (544)
Q Consensus 401 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 479 (544)
.+...+.++.+++.+.+.+.. +..+++|++|++++++ ++.++..+|.++++|+.|++++|+++.+.+.+|..+++|+.
T Consensus 6 ~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 6 CPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp CCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 344566788888887776544 6788899999997664 88888888999999999999999999999999999999999
Q ss_pred EeecCCcccccCccccCCCCCCeeecCCCCCCCC
Q 009079 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI 513 (544)
Q Consensus 480 L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l 513 (544)
|+|++|.++.+|........|+.|+|++|++..-
T Consensus 85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~ 118 (156)
T d2ifga3 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (156)
T ss_dssp EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred eeccCCCCcccChhhhccccccccccCCCcccCC
Confidence 9999999999988877777899999999998743
No 36
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=2.7e-12 Score=105.03 Aligned_cols=109 Identities=25% Similarity=0.278 Sum_probs=96.8
Q ss_pred CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCC-CCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (544)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 457 (544)
+...+.++++++.+.+.|..+..+++|++|++.++ .++.++...|.++++|+.|++++|+++.++..+|..+++|++|+
T Consensus 7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 44566789999998888888888999999999766 59999988899999999999999999999888999999999999
Q ss_pred cCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (544)
Q Consensus 458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 488 (544)
+++|+++.+....|... .|+.|+|++|.+.
T Consensus 87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred ccCCCCcccChhhhccc-cccccccCCCccc
Confidence 99999999988888765 6999999999775
No 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.37 E-value=1e-08 Score=83.96 Aligned_cols=66 Identities=26% Similarity=0.174 Sum_probs=32.2
Q ss_pred hcCCCCcEEEccCCCCCCCCH--HHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCC
Q 009079 400 SSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (544)
Q Consensus 400 ~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~ 465 (544)
..++.|++|++++|+|+++.+ ..+..+++|+.|++++|+|+++....+-....|+.+++++|++..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 345555555555555555432 234455555555555555555433222223345555555554433
No 38
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.30 E-value=3.6e-07 Score=74.85 Aligned_cols=58 Identities=26% Similarity=0.276 Sum_probs=28.2
Q ss_pred ecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCC
Q 009079 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFN 101 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~ 101 (544)
.+.|++|++++|.+. .+.+.+...+.|++|++++|.++ .+..++...+.|++|+++++
T Consensus 43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence 344555555555554 22234444555555555555544 12234444455555555544
No 39
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.22 E-value=8.3e-07 Score=72.62 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=54.2
Q ss_pred ecCccEEecccC-ccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCccc-----cCC
Q 009079 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (544)
Q Consensus 44 ~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~ 107 (544)
.+.|++|+++++ .++ .+..++...++|++|++++|.+. .+.+++...+.|++|++++|.++ .+.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 356777777763 354 23456677777888888877766 33345666777777777777766 233
Q ss_pred ccccccCCccEEEcCCCCCcc
Q 009079 108 DEIGSATALVKFDCSSNQLKE 128 (544)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~~~~ 128 (544)
..+...+.|++|+++++.+..
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~ 114 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSV 114 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCC
T ss_pred HHHHhCCcCCEEECCCCcCCC
Confidence 445566667777776665443
No 40
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.14 E-value=4.7e-07 Score=73.72 Aligned_cols=80 Identities=29% Similarity=0.260 Sum_probs=64.1
Q ss_pred cCCCccEEEcCCCCCCCCC---hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCC-------cc
Q 009079 378 EAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD-------GF 447 (544)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~-------~l 447 (544)
.++.|++|++++|+++.++ ..+..+++|+.|++++|.++++....+.....|+++++++|++...... .+
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~ 142 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence 4678999999999998764 3467899999999999999998765556667899999999999764332 25
Q ss_pred CCCCCcceEe
Q 009079 448 KDIPMLQILD 457 (544)
Q Consensus 448 ~~~~~L~~L~ 457 (544)
..+|+|+.||
T Consensus 143 ~~~P~L~~LD 152 (162)
T d1koha1 143 ERFPKLLRLD 152 (162)
T ss_dssp TTSTTCCEET
T ss_pred HHCCCCCEEC
Confidence 6788888775
No 41
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.95 E-value=3.5e-06 Score=68.79 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=17.9
Q ss_pred hhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCcc
Q 009079 63 DLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSI 103 (544)
Q Consensus 63 ~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l 103 (544)
++..+++|++|++++|.++ .+..++...+.++.++++++.+
T Consensus 41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~ 86 (166)
T d1io0a_ 41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 86 (166)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence 3344444444444444443 1222334444444444444444
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.85 E-value=1.1e-05 Score=65.70 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=25.4
Q ss_pred ecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEc
Q 009079 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDV 98 (544)
Q Consensus 44 ~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l 98 (544)
+++|++|++++|.++ .+.+.+...+.++.++++++.+. .+..++...++|+.+++
T Consensus 45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L 109 (166)
T d1io0a_ 45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 109 (166)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence 344555555555544 12234444455555555555444 12234444455554333
Done!