Query 009080
Match_columns 544
No_of_seqs 290 out of 563
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 20:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.7 1.3E-16 2.8E-21 140.5 7.6 65 438-502 34-102 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.7 3.5E-05 7.5E-10 49.8 3.4 21 133-153 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.3 0.00052 1.1E-08 79.7 7.9 66 132-201 672-738 (862)
4 smart00015 IQ Short calmodulin 97.1 0.0004 8.7E-09 46.9 2.8 22 132-153 2-23 (26)
5 KOG0520 Uncharacterized conser 96.3 0.0029 6.3E-08 74.2 3.8 72 132-203 809-888 (975)
6 KOG0160 Myosin class V heavy c 95.4 0.042 9.2E-07 64.4 8.3 66 130-198 693-758 (862)
7 PTZ00014 myosin-A; Provisional 95.3 0.022 4.7E-07 66.8 5.4 40 135-174 779-819 (821)
8 PF00612 IQ: IQ calmodulin-bin 91.9 0.14 3.1E-06 33.0 2.3 19 156-174 2-20 (21)
9 COG5022 Myosin heavy chain [Cy 91.4 0.4 8.6E-06 58.8 6.9 65 133-198 745-810 (1463)
10 KOG2128 Ras GTPase-activating 91.2 0.44 9.5E-06 58.2 6.9 70 132-201 564-642 (1401)
11 KOG0164 Myosin class I heavy c 89.5 0.8 1.7E-05 53.0 6.9 58 134-201 697-754 (1001)
12 smart00015 IQ Short calmodulin 85.7 0.68 1.5E-05 31.2 2.2 19 156-174 4-22 (26)
13 PTZ00014 myosin-A; Provisional 82.8 2.6 5.7E-05 49.9 6.7 40 157-199 779-818 (821)
14 KOG2128 Ras GTPase-activating 73.0 5.6 0.00012 49.2 5.7 62 137-201 539-612 (1401)
15 KOG4427 E3 ubiquitin protein l 72.6 3.4 7.3E-05 48.4 3.6 25 130-154 27-51 (1096)
16 KOG0377 Protein serine/threoni 67.4 7 0.00015 43.6 4.4 35 131-165 15-49 (631)
17 KOG0942 E3 ubiquitin protein l 60.4 6.2 0.00013 47.0 2.7 25 130-154 26-50 (1001)
18 KOG0520 Uncharacterized conser 57.5 21 0.00046 43.1 6.4 69 130-204 788-856 (975)
19 KOG0161 Myosin class II heavy 55.0 17 0.00037 47.0 5.3 39 158-196 776-814 (1930)
20 KOG0260 RNA polymerase II, lar 54.1 3E+02 0.0065 34.8 14.8 10 495-504 1570-1579(1605)
21 KOG0163 Myosin class VI heavy 53.7 16 0.00035 43.2 4.4 34 131-164 811-845 (1259)
22 KOG0161 Myosin class II heavy 50.5 18 0.00038 46.8 4.5 41 134-174 774-818 (1930)
23 KOG0162 Myosin class I heavy c 44.6 19 0.0004 42.6 3.1 38 134-174 697-735 (1106)
24 PF08763 Ca_chan_IQ: Voltage g 35.2 42 0.00091 25.1 2.7 21 132-152 8-28 (35)
25 COG5022 Myosin heavy chain [Cy 33.4 1.4E+02 0.003 38.0 8.2 73 131-204 791-865 (1463)
26 KOG0165 Microtubule-associated 25.1 1.1E+02 0.0024 36.6 5.2 25 130-154 940-964 (1023)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.66 E-value=1.3e-16 Score=140.52 Aligned_cols=65 Identities=63% Similarity=0.795 Sum_probs=53.2
Q ss_pred CCCccccchhhhhhhcccCCCCCCCCCCCCCccCCcccccccCCCCCCCCCC--CCC--CCCCCCCCCC
Q 009080 438 LPNYMAATESAKAKARSQSAPRQRPSTPERDRVGSAKKRLSFPVPEPYGVAM--GYG--NHGQNLRSPS 502 (544)
Q Consensus 438 ~PsYMa~T~SakAK~Rs~s~pkqr~~tpek~~~~s~KKRlS~p~~~~~~~~~--g~~--~~~~~~RSPs 502 (544)
+|||||+|||||||+|+||+||||+++++.+....++||+|||+.......+ +.. ...+.+||||
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~~~~~~~qrSps 102 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRTSSSSQSQRSPS 102 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCccccccccCCCCC
Confidence 9999999999999999999999999988876566789999999865533332 222 3688999996
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.74 E-value=3.5e-05 Score=49.82 Aligned_cols=21 Identities=52% Similarity=0.825 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 009080 133 IYAAIVIQTAFRGYLARRALR 153 (544)
Q Consensus 133 e~AAi~IQtafRGyLARralr 153 (544)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.30 E-value=0.00052 Score=79.73 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009080 132 EIYAAIVIQTAFRGYLARRALRALK-GLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQD 201 (544)
Q Consensus 132 ee~AAi~IQtafRGyLARralraLk-glVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~ 201 (544)
...+++.||..||||+.|+.|..++ +++.||+++||.++|+. ++ ...|++.+|..+|+...|+.|.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~y~ 738 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRRYR 738 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 4467888999999999999999955 68888999999999992 22 6667777777777777777665
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.13 E-value=0.0004 Score=46.94 Aligned_cols=22 Identities=55% Similarity=0.833 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 009080 132 EIYAAIVIQTAFRGYLARRALR 153 (544)
Q Consensus 132 ee~AAi~IQtafRGyLARralr 153 (544)
.+.||+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999984
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.33 E-value=0.0029 Score=74.15 Aligned_cols=72 Identities=28% Similarity=0.324 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhh-HHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHhhhhccCC
Q 009080 132 EIYAAIVIQTAFRGYLARRALRALKG-LVKLQALVRGHNVRKQAKMTL-------RCMQALVRVQARVLDQRVKLSQDGS 203 (544)
Q Consensus 132 ee~AAi~IQtafRGyLARralraLkg-lVrLQalvRG~~vRrqa~~tl-------r~mqA~v~iQs~iR~~r~R~s~~g~ 203 (544)
...||..||.-||||+.|+.+..++. +|+||+-|||++||+++.... +-+.++-++|+-+|+++.|...+..
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 34789999999999999999999775 999999999999999997332 2445666778888887777766544
No 6
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=95.44 E-value=0.042 Score=64.40 Aligned_cols=66 Identities=24% Similarity=0.199 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKL 198 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralraLkglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~ 198 (544)
...-.+++.||+.+||+++|+........+.+|..+|+++.|+++ +....+++.+|+.+|+..+|.
T Consensus 693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 456689999999999999998333455788899999999999999 566789999999999999998
No 7
>PTZ00014 myosin-A; Provisional
Probab=95.29 E-value=0.022 Score=66.78 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhHHHHHHHHH-hhhHHHHHHhhhhhhhhhhH
Q 009080 135 AAIVIQTAFRGYLARRALRA-LKGLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 135 AAi~IQtafRGyLARralra-LkglVrLQalvRG~~vRrqa 174 (544)
.++.||+++|||++|+.|.. ..++++||+.+||+++++..
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68899999999999999888 66899999999999998764
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=91.94 E-value=0.14 Score=32.95 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.8
Q ss_pred hhHHHHHHhhhhhhhhhhH
Q 009080 156 KGLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 156 kglVrLQalvRG~~vRrqa 174 (544)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4678889999999988876
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=91.37 E-value=0.4 Score=58.83 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH-hhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009080 133 IYAAIVIQTAFRGYLARRALRA-LKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKL 198 (544)
Q Consensus 133 e~AAi~IQtafRGyLARralra-LkglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~ 198 (544)
...|++||+++||++.||.+.+ ++.+..+|.+.+|..+++.....+. ....+++|..++...-|.
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~r~ 810 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLGSRK 810 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHhhHH
Confidence 4689999999999998888777 7888888888888888866643332 345566666666554443
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=91.18 E-value=0.44 Score=58.22 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhHHH---HHHHH-H-hhhHHHHHHhhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHhhhhcc
Q 009080 132 EIYAAIVIQTAFRGYLA---RRALR-A-LKGLVKLQALVRGHNVRKQAKMTL----RCMQALVRVQARVLDQRVKLSQD 201 (544)
Q Consensus 132 ee~AAi~IQtafRGyLA---Rralr-a-LkglVrLQalvRG~~vRrqa~~tl----r~mqA~v~iQs~iR~~r~R~s~~ 201 (544)
..-..+.||.+.|||+. +..+. . ++-||++|++.||+++|+.+...+ .||...+.||+-+|.+..|..+.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~ 642 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK 642 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence 44567889999999994 22222 2 778999999999999999987443 69999999999999999998876
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=89.55 E-value=0.8 Score=53.02 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009080 134 YAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQD 201 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralraLkglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~ 201 (544)
.-|+.||+++||+++|..|+.++....|=...|.+.++ ..+..||.++|+.+.++.|.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~k----------s~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLK----------SYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhccccC
Confidence 45789999999999999999987654432244533332 23456888999988877664
No 12
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=85.68 E-value=0.68 Score=31.18 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.4
Q ss_pred hhHHHHHHhhhhhhhhhhH
Q 009080 156 KGLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 156 kglVrLQalvRG~~vRrqa 174 (544)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888876
No 13
>PTZ00014 myosin-A; Provisional
Probab=82.78 E-value=2.6 Score=49.90 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=34.4
Q ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009080 157 GLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLS 199 (544)
Q Consensus 157 glVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s 199 (544)
-++.||+.+||++.|+.+ ++..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999998 5558899999999999888754
No 14
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=73.02 E-value=5.6 Score=49.19 Aligned_cols=62 Identities=27% Similarity=0.294 Sum_probs=49.1
Q ss_pred HHHHHHhhhHHHHHHHHH----hh----hHHHHHHhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009080 137 IVIQTAFRGYLARRALRA----LK----GLVKLQALVRGHNVRKQAK----MTLRCMQALVRVQARVLDQRVKLSQD 201 (544)
Q Consensus 137 i~IQtafRGyLARralra----Lk----glVrLQalvRG~~vRrqa~----~tlr~mqA~v~iQs~iR~~r~R~s~~ 201 (544)
.+||+-.|||..|-++++ |+ -++.+|++|||.++ +. .......-+|.+|+..|+...|..+.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 456999999999999988 22 68889999999997 22 22234457899999999999998764
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.57 E-value=3.4 Score=48.42 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHH
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRA 154 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralra 154 (544)
.+.|.||+.||..+|||++|+.+..
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998765
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=67.38 E-value=7 Score=43.56 Aligned_cols=35 Identities=40% Similarity=0.377 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHhh
Q 009080 131 REIYAAIVIQTAFRGYLARRALRALKGLVKLQALV 165 (544)
Q Consensus 131 ~ee~AAi~IQtafRGyLARralraLkglVrLQalv 165 (544)
+--.|||.||.-||+|.||...+..-...-+|+|=
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslE 49 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLE 49 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHh
Confidence 34579999999999999999988866666677763
No 17
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.44 E-value=6.2 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHH
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRA 154 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralra 154 (544)
.++|.+||+||+.+|||++|+..+.
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999997665
No 18
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=57.51 E-value=21 Score=43.13 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQDGSR 204 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralraLkglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~g~~ 204 (544)
..+...+++++.+|+++..|..-. +..++|.-+||+..|+.+ |-.-+=.|+||+.+|+..+|+-|....
T Consensus 788 ~~~~~~~m~~~~a~~~~~~r~~~~---aa~~iq~~f~~yk~r~~~---l~tr~p~v~iqa~~rg~q~r~dy~ki~ 856 (975)
T KOG0520|consen 788 SEELAVSMKASSAFSMCDDRSDPA---AASRIQKKFRGYKQRKEF---LSTRQPIVKIQAAVRGYQVRKDYRKIT 856 (975)
T ss_pred hhhhhhhhhcccchhcCccccchh---HHHHhhhhhhhHHhhhhh---cccCCccccchhhhhchhHhhhhheec
Confidence 445567899999999776665443 467789999999999998 434488999999999999999987544
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.04 E-value=17 Score=46.99 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=20.3
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009080 158 LVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRV 196 (544)
Q Consensus 158 lVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~ 196 (544)
|+.|||.|||+++|+.+..-+..+.|+..||.-+|.+..
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~ 814 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK 814 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555533
No 20
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=54.12 E-value=3e+02 Score=34.82 Aligned_cols=10 Identities=30% Similarity=0.477 Sum_probs=5.2
Q ss_pred CCCCCCCCcc
Q 009080 495 GQNLRSPSFK 504 (544)
Q Consensus 495 ~~~~RSPs~K 504 (544)
.|++.|||+-
T Consensus 1570 sysptspsys 1579 (1605)
T KOG0260|consen 1570 SYSPTSPSYS 1579 (1605)
T ss_pred CCCCCCCCcc
Confidence 3555555554
No 21
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=53.72 E-value=16 Score=43.20 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH-hhhHHHHHHh
Q 009080 131 REIYAAIVIQTAFRGYLARRALRA-LKGLVKLQAL 164 (544)
Q Consensus 131 ~ee~AAi~IQtafRGyLARralra-LkglVrLQal 164 (544)
-+..+.+++|...||||+|+.++- +-|++++-+|
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 356788999999999999998887 6666665444
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=50.54 E-value=18 Score=46.84 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHH----hhhHHHHHHhhhhhhhhhhH
Q 009080 134 YAAIVIQTAFRGYLARRALRA----LKGLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralra----LkglVrLQalvRG~~vRrqa 174 (544)
.-.+.+|+++||||+|+.|.. +-+|..||.=||-+..-|..
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345889999999999998887 55888889888777655543
No 23
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=44.60 E-value=19 Score=42.56 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhh-HHHHHHhhhhhhhhhhH
Q 009080 134 YAAIVIQTAFRGYLARRALRALKG-LVKLQALVRGHNVRKQA 174 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralraLkg-lVrLQalvRG~~vRrqa 174 (544)
-=|.+||.|||.|++||.+..+|- -.+ |+-|..-||.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 358999999999999999888773 222 45666666665
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=35.20 E-value=42 Score=25.06 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 009080 132 EIYAAIVIQTAFRGYLARRAL 152 (544)
Q Consensus 132 ee~AAi~IQtafRGyLARral 152 (544)
+-.||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999853
No 25
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=33.38 E-value=1.4e+02 Score=37.96 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH-hhhHHHHH-HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 009080 131 REIYAAIVIQTAFRGYLARRALRA-LKGLVKLQ-ALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQDGSR 204 (544)
Q Consensus 131 ~ee~AAi~IQtafRGyLARralra-LkglVrLQ-alvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~g~~ 204 (544)
....++++||..+|.+.-|+.++. +.-|..|| .+.++..++-. ..--..+.+.+.+|..+|+...+..+....
T Consensus 791 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~-~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~ 865 (1463)
T COG5022 791 LKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRET-EEVEFSLKAEVLIQKFGRSLKAKKRFSLLK 865 (1463)
T ss_pred hHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 445789999999999999999998 66688888 55555555542 234456677788888888877777665543
No 26
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=25.09 E-value=1.1e+02 Score=36.64 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHH
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRA 154 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralra 154 (544)
+..-.||+.||.+.|||.||+.|.-
T Consensus 940 enkKkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999875
Done!