Query 009080
Match_columns 544
No_of_seqs 290 out of 563
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 98.9 1.8E-09 6E-14 84.2 7.1 53 131-184 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.6 5.1E-08 1.7E-12 73.1 5.7 41 134-174 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.5 1.6E-07 5.5E-12 109.6 9.1 72 130-202 813-885 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.5 2.7E-07 9.3E-12 107.7 9.9 68 133-201 768-836 (1080)
5 2l53_B CAM, voltage-gated sodi 97.8 7.8E-06 2.7E-10 57.3 2.7 24 130-153 3-26 (31)
6 1n2d_C IQ2 and IQ3 motifs from 97.8 3.5E-05 1.2E-09 57.5 6.0 44 156-200 4-47 (48)
7 2kxw_B Sodium channel protein 97.7 1.6E-05 5.6E-10 54.0 2.5 22 130-151 3-24 (27)
8 2ix7_C Myosin-5A; contractIle 97.0 0.00088 3E-08 51.8 5.3 43 156-201 6-48 (58)
9 1wdc_A Scallop myosin; calcium 96.7 0.0021 7.2E-08 50.8 5.6 39 134-172 7-49 (64)
10 2bl0_A Major plasmodial myosin 96.7 0.002 6.9E-08 50.8 4.9 41 158-198 7-47 (63)
11 1wdc_A Scallop myosin; calcium 96.4 0.0051 1.7E-07 48.6 5.9 44 157-200 8-51 (64)
12 2bl0_A Major plasmodial myosin 96.4 0.0047 1.6E-07 48.7 5.5 41 134-174 5-49 (63)
13 1kk8_A Myosin heavy chain, str 96.2 0.0066 2.3E-07 69.5 7.4 41 134-174 780-824 (837)
14 3gn4_A Myosin-VI; unconvention 95.6 0.013 4.3E-07 54.4 5.1 36 130-165 42-78 (148)
15 1i84_S Smooth muscle myosin he 94.4 0.033 1.1E-06 65.7 5.6 41 134-174 793-837 (1184)
16 1kk8_A Myosin heavy chain, str 91.6 0.28 9.6E-06 56.3 7.4 45 157-201 781-825 (837)
17 4dck_A Sodium channel protein 91.2 0.14 4.8E-06 48.3 3.8 25 130-154 127-151 (168)
18 1i84_S Smooth muscle myosin he 87.2 0.96 3.3E-05 53.4 7.7 45 156-200 793-837 (1184)
19 1w7j_A Myosin VA; motor protei 83.4 0.74 2.5E-05 52.6 4.2 25 133-157 768-792 (795)
20 4anj_A Unconventional myosin-V 71.2 5.2 0.00018 47.1 6.6 41 133-174 775-816 (1052)
21 3gn4_A Myosin-VI; unconvention 59.3 15 0.00052 33.9 5.9 31 156-189 46-76 (148)
22 4anj_A Unconventional myosin-V 33.2 37 0.0013 40.0 5.1 43 155-200 774-816 (1052)
23 2f3y_B Voltage-dependent L-typ 25.8 40 0.0014 22.6 2.1 19 135-153 4-22 (26)
24 2be6_D Voltage-dependent L-typ 24.0 54 0.0019 23.7 2.7 22 132-153 10-31 (37)
25 3dvk_B Voltage-dependent R-typ 23.2 31 0.0011 22.6 1.2 18 132-149 5-22 (23)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.93 E-value=1.8e-09 Score=84.24 Aligned_cols=53 Identities=32% Similarity=0.400 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 009080 131 REIYAAIVIQTAFRGYLARRALRALK-GLVKLQALVRGHNVRKQAKMTLRCMQAL 184 (544)
Q Consensus 131 ~ee~AAi~IQtafRGyLARralraLk-glVrLQalvRG~~vRrqa~~tlr~mqA~ 184 (544)
+.+.|||.||+.||||++|+.|..++ ++|.||+.+||+++|+.+ ..++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCc
Confidence 56789999999999999999999976 899999999999999999 445555554
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.61 E-value=5.1e-08 Score=73.07 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhh---hHHHHHHhhhhhhhhhhH
Q 009080 134 YAAIVIQTAFRGYLARRALRALK---GLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralraLk---glVrLQalvRG~~vRrqa 174 (544)
.|||.||+.+||||+|+.+..++ ..|.||+.+||+.+|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 48999999999999999998854 788899999999998865
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.50 E-value=1.6e-07 Score=109.59 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRALK-GLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQDG 202 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralraLk-glVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~g 202 (544)
.+++.||++||+.||||++|+.|..++ ++|.||+.+||+++|+++ ..++...+++.||+.+|++..|+.|..
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~-~~lr~~~aav~IQ~~~Rg~l~R~~y~~ 885 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY-QMMLREHKSIIIQKHVRGWLARVHYHR 885 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTTHHHHHTTT
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999955 799999999999999998 445566778888888888888777653
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.47 E-value=2.7e-07 Score=107.68 Aligned_cols=68 Identities=29% Similarity=0.346 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009080 133 IYAAIVIQTAFRGYLARRALRALK-GLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQD 201 (544)
Q Consensus 133 e~AAi~IQtafRGyLARralraLk-glVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~ 201 (544)
..||+.||++||||++|+.|+.++ +++.||+.+||+++|+.+ ..++...|++.||+.+|++.+|+.|.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y~ 836 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRYQ 836 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHHH
Confidence 579999999999999999999955 799999999999999998 56788999999999999999999876
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.84 E-value=7.8e-06 Score=57.26 Aligned_cols=24 Identities=46% Similarity=0.607 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHH
Q 009080 130 AREIYAAIVIQTAFRGYLARRALR 153 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralr 153 (544)
.+||.||+.||.|||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 369999999999999999998764
No 6
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.80 E-value=3.5e-05 Score=57.47 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=39.0
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009080 156 KGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQ 200 (544)
Q Consensus 156 kglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~ 200 (544)
+.+|.||+.+||+++|+++ ..++...|++.||+.+|++.+|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 4789999999999999999 5566778999999999999998764
No 7
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.70 E-value=1.6e-05 Score=54.02 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHH
Q 009080 130 AREIYAAIVIQTAFRGYLARRA 151 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARra 151 (544)
.+||.||+.||.|||+||+|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999865
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.01 E-value=0.00088 Score=51.79 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=37.7
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009080 156 KGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQD 201 (544)
Q Consensus 156 kglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~ 201 (544)
..+|.||+.+||+++|+.+ ++...+++.||+.+|++.+|+.+.
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 444579999999999999998764
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.74 E-value=0.0021 Score=50.82 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHhhhhhhhhh
Q 009080 134 YAAIVIQTAFRGYLARRALRAL----KGLVKLQALVRGHNVRK 172 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralraL----kglVrLQalvRG~~vRr 172 (544)
..++.||+..||||+|+.|..+ .++..||.-+|+++.++
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666666666655552 23334455555444444
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.66 E-value=0.002 Score=50.83 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=20.1
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009080 158 LVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKL 198 (544)
Q Consensus 158 lVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~ 198 (544)
++.||+.+||+++|+.+...+....|+..||.-+|++..++
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444444445555555555555544
No 11
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.43 E-value=0.0051 Score=48.59 Aligned_cols=44 Identities=23% Similarity=0.095 Sum_probs=39.6
Q ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009080 157 GLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQ 200 (544)
Q Consensus 157 glVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~ 200 (544)
-++.|||.+||+++|+.+...+....|+..||.-+|++..++..
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 48889999999999999998888899999999999999887654
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.40 E-value=0.0047 Score=48.70 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHhhhhhhhhhhH
Q 009080 134 YAAIVIQTAFRGYLARRALRAL----KGLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralraL----kglVrLQalvRG~~vRrqa 174 (544)
..++.||+..||||+|+.|..+ .++..||.-+|+++.++.-
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5689999999999999999985 4677889999999998765
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.18 E-value=0.0066 Score=69.49 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHhhhhhhhhhhH
Q 009080 134 YAAIVIQTAFRGYLARRALRAL----KGLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralraL----kglVrLQalvRG~~vRrqa 174 (544)
.+|+.||+++||||+|+.|+.+ .+++.||..+||+++||..
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 5789999999999999999885 4678888888888888776
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.57 E-value=0.013 Score=54.40 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHH-hhhHHHHHHhh
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRA-LKGLVKLQALV 165 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralra-LkglVrLQalv 165 (544)
.-+..|+|+||++.||||+|+.++- +.|++++.+|.
T Consensus 42 ~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 42 KYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3467899999999999999999988 78998887764
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.42 E-value=0.033 Score=65.69 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHhhhhhhhhhhH
Q 009080 134 YAAIVIQTAFRGYLARRALRAL----KGLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 134 ~AAi~IQtafRGyLARralraL----kglVrLQalvRG~~vRrqa 174 (544)
.+|+.||+.+||||+|+.|..+ .+++.||..+||++.+|..
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6789999999999999999985 4899999999999999864
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=91.55 E-value=0.28 Score=56.26 Aligned_cols=45 Identities=22% Similarity=0.100 Sum_probs=39.5
Q ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009080 157 GLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQD 201 (544)
Q Consensus 157 glVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~~ 201 (544)
-++.||+.+||+++|+.+...+....|++.||..+|++..|+.+.
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 478899999999999999776667789999999999999987653
No 17
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=91.24 E-value=0.14 Score=48.31 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHH
Q 009080 130 AREIYAAIVIQTAFRGYLARRALRA 154 (544)
Q Consensus 130 ~~ee~AAi~IQtafRGyLARralra 154 (544)
..|+.||+.||.|||.|+.|+.+..
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 5789999999999999999988776
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.16 E-value=0.96 Score=53.40 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=39.3
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009080 156 KGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQ 200 (544)
Q Consensus 156 kglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~ 200 (544)
.-++.||+.+||+++|+.+...+....|++.||+.+|++..++.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357889999999999999977777788999999999999888754
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=83.38 E-value=0.74 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhh
Q 009080 133 IYAAIVIQTAFRGYLARRALRALKG 157 (544)
Q Consensus 133 e~AAi~IQtafRGyLARralraLkg 157 (544)
..+|+.||+++||||+|+.|+.++.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=71.23 E-value=5.2 Score=47.05 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHhhhhhhhhhhH
Q 009080 133 IYAAIVIQTAFRGYLARRALRALK-GLVKLQALVRGHNVRKQA 174 (544)
Q Consensus 133 e~AAi~IQtafRGyLARralraLk-glVrLQalvRG~~vRrqa 174 (544)
+.+|+.||. +||||+|+.|+.++ ..+.+|.+-|+...|+..
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467777775 79999999999865 677788877777665554
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=59.26 E-value=15 Score=33.93 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=23.2
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 009080 156 KGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQA 189 (544)
Q Consensus 156 kglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs 189 (544)
..+|++|..|||+++|++. .-++.+++++-+
T Consensus 46 ~~~i~iQktvR~~L~rkkh---kPRi~g~~kv~~ 76 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRH---KPRIDGLVKVGT 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Confidence 4788999999999999998 444555555544
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=33.18 E-value=37 Score=40.02 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009080 155 LKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVKLSQ 200 (544)
Q Consensus 155 LkglVrLQalvRG~~vRrqa~~tlr~mqA~v~iQs~iR~~r~R~s~ 200 (544)
+..++.+|..|||.++|+++. +-..+++.||...|.++.|...
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~---k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWK---KVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 556777777899999999983 4445677777766666666543
No 23
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=25.76 E-value=40 Score=22.62 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 009080 135 AAIVIQTAFRGYLARRALR 153 (544)
Q Consensus 135 AAi~IQtafRGyLARralr 153 (544)
|...||-.||.|..|++-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 6678999999999998654
No 24
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=24.02 E-value=54 Score=23.68 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 009080 132 EIYAAIVIQTAFRGYLARRALR 153 (544)
Q Consensus 132 ee~AAi~IQtafRGyLARralr 153 (544)
+=.|-..||-.||-|..|+.-.
T Consensus 10 KfYatfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999998753
No 25
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=23.24 E-value=31 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 009080 132 EIYAAIVIQTAFRGYLAR 149 (544)
Q Consensus 132 ee~AAi~IQtafRGyLAR 149 (544)
+-.|+..||-.||-+..|
T Consensus 5 KiYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 346899999999988776
Done!