Query 009082
Match_columns 544
No_of_seqs 136 out of 1480
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02346 chap_CCT_theta T-com 100.0 9E-106 2E-110 869.7 61.3 524 10-535 2-529 (531)
2 TIGR02347 chap_CCT_zeta T-comp 100.0 4E-104 9E-109 855.1 59.6 510 13-528 4-528 (531)
3 TIGR02339 thermosome_arch ther 100.0 4E-104 8E-109 858.2 59.1 506 13-524 4-518 (519)
4 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2E-103 4E-108 851.2 59.7 506 14-527 2-515 (517)
5 TIGR02344 chap_CCT_gamma T-com 100.0 9E-104 2E-108 856.3 57.2 509 13-527 4-523 (525)
6 TIGR02343 chap_CCT_epsi T-comp 100.0 2E-103 4E-108 852.2 58.8 509 13-525 13-531 (532)
7 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2E-103 5E-108 852.9 59.0 501 21-527 4-527 (527)
8 TIGR02342 chap_CCT_delta T-com 100.0 3E-103 7E-108 849.0 59.0 498 25-526 8-517 (517)
9 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6E-103 1E-107 849.4 60.4 508 13-527 4-521 (522)
10 cd03343 cpn60 cpn60 chaperonin 100.0 4E-103 9E-108 850.6 59.0 508 13-526 3-517 (517)
11 PTZ00212 T-complex protein 1 s 100.0 6E-103 1E-107 848.7 59.3 509 12-527 9-527 (533)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 7E-103 1E-107 848.8 58.6 508 13-524 9-526 (526)
13 KOG0361 Chaperonin complex com 100.0 2E-104 4E-109 769.5 38.2 513 9-531 4-528 (543)
14 TIGR02341 chap_CCT_beta T-comp 100.0 8E-102 2E-106 837.0 59.6 507 14-528 3-517 (519)
15 TIGR02345 chap_CCT_eta T-compl 100.0 1E-101 2E-106 838.3 58.6 507 13-526 6-520 (522)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 1E-101 2E-106 838.8 58.5 497 25-525 7-515 (515)
17 TIGR02340 chap_CCT_alpha T-com 100.0 3E-101 7E-106 836.5 60.3 503 20-528 7-532 (536)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.4E-99 3E-104 813.4 55.3 475 16-526 3-483 (484)
19 KOG0358 Chaperonin complex com 100.0 6E-101 1E-105 743.7 38.3 497 25-525 25-533 (534)
20 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.6E-98 6E-103 802.0 54.4 464 22-525 4-471 (472)
21 KOG0362 Chaperonin complex com 100.0 2.3E-98 5E-103 750.1 47.2 534 1-544 1-537 (537)
22 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.6E-97 6E-102 796.0 51.6 465 13-524 4-479 (480)
23 KOG0363 Chaperonin complex com 100.0 1.3E-96 3E-101 710.4 38.3 513 10-529 3-522 (527)
24 cd00309 chaperonin_type_I_II c 100.0 1E-93 2.2E-98 768.5 53.7 454 24-524 6-464 (464)
25 COG0459 GroL Chaperonin GroEL 100.0 9.8E-93 2.1E-97 755.6 49.1 498 21-530 7-518 (524)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.8E-91 6.1E-96 756.4 51.2 478 38-527 1-485 (485)
27 PRK12849 groEL chaperonin GroE 100.0 1E-88 2.2E-93 734.4 52.8 462 25-541 9-536 (542)
28 PRK12851 groEL chaperonin GroE 100.0 1.6E-88 3.4E-93 733.6 52.6 466 25-542 10-540 (541)
29 PRK00013 groEL chaperonin GroE 100.0 2.6E-88 5.6E-93 731.2 51.4 465 25-541 9-539 (542)
30 PRK12850 groEL chaperonin GroE 100.0 1.5E-87 3.3E-92 726.3 53.0 466 25-542 10-540 (544)
31 KOG0360 Chaperonin complex com 100.0 2.5E-89 5.4E-94 680.4 29.4 504 22-531 16-541 (545)
32 PRK12852 groEL chaperonin GroE 100.0 2E-86 4.4E-91 719.3 52.1 462 25-538 10-537 (545)
33 PTZ00114 Heat shock protein 60 100.0 3.1E-86 6.6E-91 718.6 52.9 454 25-529 21-543 (555)
34 cd03344 GroEL GroEL_like type 100.0 2.6E-86 5.7E-91 713.9 50.3 447 25-524 7-519 (520)
35 TIGR02348 GroEL chaperonin Gro 100.0 1.6E-85 3.4E-90 709.3 50.5 450 25-527 8-523 (524)
36 PRK14104 chaperonin GroEL; Pro 100.0 3.8E-84 8.3E-89 699.3 51.8 459 25-535 10-534 (546)
37 KOG0364 Chaperonin complex com 100.0 1.4E-86 3.1E-91 654.7 28.0 512 12-529 6-524 (527)
38 CHL00093 groEL chaperonin GroE 100.0 2E-84 4.4E-89 701.4 47.1 454 25-528 9-527 (529)
39 PLN03167 Chaperonin-60 beta su 100.0 5E-84 1.1E-88 701.9 46.6 455 26-529 66-584 (600)
40 KOG0359 Chaperonin complex com 100.0 4.1E-80 8.9E-85 608.2 28.7 492 25-527 16-516 (520)
41 KOG0357 Chaperonin complex com 100.0 1.6E-69 3.5E-74 518.6 23.4 371 19-527 22-397 (400)
42 KOG0356 Mitochondrial chaperon 100.0 3.8E-48 8.3E-53 394.7 36.0 463 25-530 23-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 1.6E-38 3.4E-43 314.0 24.5 227 175-409 18-257 (261)
44 cd03333 chaperonin_like chaper 100.0 5.3E-34 1.1E-38 274.4 22.3 204 159-405 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.8 1.3E-18 2.9E-23 195.2 14.5 231 176-414 333-575 (1598)
46 COG1433 Uncharacterized conser 63.9 24 0.00053 30.6 6.3 52 280-332 56-107 (121)
47 PRK13600 putative ribosomal pr 55.3 53 0.0011 26.5 6.5 53 278-330 18-74 (84)
48 cd00851 MTH1175 This uncharact 55.1 29 0.00063 28.5 5.3 39 280-319 54-92 (103)
49 cd00562 NifX_NifB This CD repr 48.0 58 0.0013 26.5 6.1 38 281-319 53-90 (102)
50 PF02579 Nitro_FeMo-Co: Dinitr 45.6 66 0.0014 25.7 5.9 38 281-319 45-82 (94)
51 cd01143 YvrC Periplasmic bindi 42.6 78 0.0017 29.1 6.7 51 282-332 53-110 (195)
52 TIGR03659 IsdE heme ABC transp 41.6 69 0.0015 32.0 6.6 54 281-334 83-142 (289)
53 COG4359 Uncharacterized conser 37.7 1E+02 0.0022 28.9 6.1 44 276-319 76-123 (220)
54 cd01144 BtuF Cobalamin binding 37.1 97 0.0021 29.8 6.7 53 281-333 49-108 (245)
55 PRK13602 putative ribosomal pr 37.0 1.4E+02 0.003 23.8 6.3 50 280-332 18-71 (82)
56 PRK09534 btuF corrinoid ABC tr 37.0 92 0.002 32.4 6.8 53 281-333 111-170 (359)
57 PRK06683 hypothetical protein; 34.2 1.6E+02 0.0035 23.5 6.3 50 280-332 18-71 (82)
58 PRK07283 hypothetical protein; 34.1 1.6E+02 0.0036 24.3 6.6 49 280-331 25-77 (98)
59 PRK07714 hypothetical protein; 33.9 1.7E+02 0.0037 24.2 6.6 50 280-332 25-78 (100)
60 PF01248 Ribosomal_L7Ae: Ribos 32.9 1.2E+02 0.0026 24.6 5.6 51 278-328 20-75 (95)
61 PRK13601 putative L7Ae-like ri 31.9 1.9E+02 0.004 23.2 6.2 50 280-332 15-68 (82)
62 COG3962 Acetolactate synthase 31.3 54 0.0012 35.0 3.8 40 389-429 216-255 (617)
63 cd01138 FeuA Periplasmic bindi 30.9 1.2E+02 0.0026 29.2 6.2 54 281-335 58-115 (248)
64 PF12846 AAA_10: AAA-like doma 30.9 1.2E+02 0.0026 29.9 6.3 58 276-333 240-302 (304)
65 cd01141 TroA_d Periplasmic bin 29.6 1.4E+02 0.003 27.3 6.1 51 281-331 61-119 (186)
66 PRK03379 vitamin B12-transport 28.7 1.5E+02 0.0032 29.1 6.4 52 282-333 65-123 (260)
67 PRK01018 50S ribosomal protein 27.7 2.4E+02 0.0052 23.3 6.5 49 280-331 23-76 (99)
68 TIGR03677 rpl7ae 50S ribosomal 26.6 2.3E+02 0.005 24.3 6.4 50 279-328 32-86 (117)
69 PRK04175 rpl7ae 50S ribosomal 26.3 2.4E+02 0.0052 24.4 6.5 50 278-327 35-89 (122)
70 PF02603 Hpr_kinase_N: HPr Ser 26.1 69 0.0015 27.9 3.1 54 266-319 58-113 (127)
71 cd01149 HutB Hemin binding pro 25.9 1.9E+02 0.0042 27.5 6.6 52 282-333 51-110 (235)
72 PRK05583 ribosomal protein L7A 23.9 3.1E+02 0.0067 23.0 6.5 50 280-332 24-77 (104)
73 COG1358 RPL8A Ribosomal protei 23.7 2.9E+02 0.0063 23.8 6.4 52 278-329 32-88 (116)
74 PTZ00365 60S ribosomal protein 23.5 2.2E+02 0.0048 28.1 6.2 47 279-325 138-189 (266)
75 PTZ00106 60S ribosomal protein 23.4 2.7E+02 0.0059 23.5 6.1 50 279-331 31-85 (108)
76 TIGR02663 nifX nitrogen fixati 23.0 2.8E+02 0.0062 23.6 6.4 51 279-332 55-109 (119)
77 cd00852 NifB NifB belongs to a 22.5 2.3E+02 0.0049 23.5 5.5 37 280-319 58-94 (106)
78 COG1504 Uncharacterized conser 21.9 4.4E+02 0.0095 22.5 6.8 49 284-332 56-110 (121)
79 cd01146 FhuD Fe3+-siderophore 21.4 2.4E+02 0.0053 27.2 6.4 53 282-334 58-116 (256)
80 TIGR03151 enACPred_II putative 21.1 3.7E+02 0.0081 27.3 7.8 56 280-335 78-133 (307)
81 TIGR00129 fdhD_narQ formate de 20.9 1.8E+02 0.004 28.3 5.3 40 280-319 183-222 (237)
82 cd04743 NPD_PKS 2-Nitropropane 20.7 3.5E+02 0.0076 27.7 7.4 55 280-335 73-127 (320)
83 PF07905 PucR: Purine cataboli 20.4 3.3E+02 0.0073 23.3 6.3 47 277-323 60-111 (123)
84 cd01140 FatB Siderophore bindi 20.3 2.5E+02 0.0055 27.3 6.3 52 282-333 65-123 (270)
85 cd01139 TroA_f Periplasmic bin 20.0 2.4E+02 0.0052 28.7 6.3 52 282-333 84-148 (342)
86 PF07278 DUF1441: Protein of u 20.0 1.7E+02 0.0038 26.4 4.4 63 383-461 64-126 (152)
No 1
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.3e-106 Score=869.69 Aligned_cols=524 Identities=63% Similarity=0.991 Sum_probs=492.9
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHH
Q 009082 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (544)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 89 (544)
...+++++..+.++.++++..|+.||..++++++|||||+|++|||++++|+++|||||+||+++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a 81 (531)
T TIGR02346 2 INSLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMAS 81 (531)
T ss_pred ccccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHH
Confidence 34556776566667556999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhh
Q 009082 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV 169 (544)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l 169 (544)
++|++++||||||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|++++...+. +..+.+.|.++++|++
T Consensus 82 ~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~tsl 159 (531)
T TIGR02346 82 EMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE--DVRNKKELIKALKASI 159 (531)
T ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998863232 4467889999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCcccccCceEEEEEeecc
Q 009082 170 ASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVD 249 (544)
Q Consensus 170 ~sk~~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~~~n~kIlll~~~l~ 249 (544)
+||+.+++++|++++++|+.++++++...+++++|+|+++.||++++|++++|++|++++.++|+.++|+||+++++||+
T Consensus 160 ~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~ 239 (531)
T TIGR02346 160 SSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLD 239 (531)
T ss_pred ccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcC
Confidence 99976669999999999999998765335899999999999999999999999999999888899999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009082 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (544)
Q Consensus 250 ~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~ 329 (544)
+.+++.++++.+++++++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||+|+++++..+|+|||.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~ 319 (531)
T TIGR02346 240 TATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKT 319 (531)
T ss_pred CCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCe
Q 009082 330 TGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 407 (544)
Q Consensus 330 tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~ 407 (544)
|||+++ +++++++++|+|+.|++.++|+++|.+|+++...++.+||+|||+|+.+++|++|+++||++++++++++|+
T Consensus 320 tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~ 399 (531)
T TIGR02346 320 VGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNR 399 (531)
T ss_pred HCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999 888988999999999999999999999998864488999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCc-
Q 009082 408 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV- 486 (544)
Q Consensus 408 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~- 486 (544)
+||||||+|++||.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+
T Consensus 400 vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~ 479 (531)
T TIGR02346 400 FLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESD 479 (531)
T ss_pred EEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCc
Confidence 9999999999999999999888889999999999999999999999999999999999999999877778999999999
Q ss_pred -ccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCC
Q 009082 487 -CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQ 535 (544)
Q Consensus 487 -i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~~~ 535 (544)
++||++.|||||+.+|+++|+.|+|+|++|||||++|..+|...+++|.
T Consensus 480 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~ 529 (531)
T TIGR02346 480 GVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ 529 (531)
T ss_pred cccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence 5999999999999999999999999999999999999998766666554
No 2
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-104 Score=855.14 Aligned_cols=510 Identities=26% Similarity=0.429 Sum_probs=481.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++....++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 4 LLNPKAESLRR-DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 34666566556 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
++++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++.+.. +..+.+.|.++++|+++||
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~---~~~~~~~l~~ia~tsl~sK 159 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE---DEVDRELLLNVARTSLRTK 159 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999986521 3567899999999999999
Q ss_pred cC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecc
Q 009082 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (544)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~ 249 (544)
+. +++++|++++++|+..+++++. .+++++|++++..||++++|++++|++|++++. .||++++||||++++++|+
T Consensus 160 ~~~~~~~~ls~iv~~Av~~v~~~~~-~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le 238 (531)
T TIGR02347 160 LPIDLADQLTEIVVDAVLAIKKDGE-QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLE 238 (531)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcCC-CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCC
Confidence 64 6789999999999999987542 488889999999999999999999999998874 5899999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEeCCccChHHHHHHHHCCeEEEEecC
Q 009082 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESG-------AE---VIVSGAAVGEMALHFCERYKLMVLKISS 319 (544)
Q Consensus 250 ~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~-------v~---lVi~~~~i~~~~l~~l~~~~I~vv~~v~ 319 (544)
+.+++.++.+.+++++++..+.+.|++++++++++|++.+ ++ ||+++++|++.+++||.++||+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~ 318 (531)
T TIGR02347 239 YEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAK 318 (531)
T ss_pred CCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCC
Confidence 9999999999999999999999999999999999999976 25 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHH
Q 009082 320 KFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 397 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~ 397 (544)
+++|+|||++|||+++ +++++++++|+|+.|++..+|+++|++|++|+ .++.+||+|||+|+.+++|++|+++||++
T Consensus 319 ~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~TI~lrG~t~~~l~E~er~l~DAl~ 397 (531)
T TIGR02347 319 RRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVK-NPKSCTILIKGPNDHTIKQIKDAVRDGLR 397 (531)
T ss_pred HHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 88999999999999999999999999999987 48899999999999999999999999999
Q ss_pred HHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCe
Q 009082 398 TYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 477 (544)
Q Consensus 398 ~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~ 477 (544)
++++++++|++|||||++|++||.+|++++...++++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++.+
T Consensus 398 v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~ 477 (531)
T TIGR02347 398 AVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEV 477 (531)
T ss_pred HHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999877778
Q ss_pred eeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCC
Q 009082 478 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 528 (544)
Q Consensus 478 ~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~ 528 (544)
+|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|..+|.
T Consensus 478 ~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 478 VGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred eeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999988664
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.6e-104 Score=858.18 Aligned_cols=506 Identities=31% Similarity=0.577 Sum_probs=481.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++.+..++ .+++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 4 ILKEGTQRTKG-RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45777777777 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++.+ ++..+++.|.++++|+++||
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~----v~~~~~~~L~~ia~tsl~sk 158 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATK----ISPEDRDLLKKVAETSLTGK 158 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCcccHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999876 24567889999999999999
Q ss_pred cC--CchhhHHHHHHHHHHHhCC---CCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecC--CCCcccccCceEEEEE
Q 009082 173 QF--GQEEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFA 245 (544)
Q Consensus 173 ~~--~~~~~ls~lv~~a~~~~~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~--~~~~~~~~n~kIlll~ 245 (544)
+. .+.++|++++++|+.++++ ++...||+++|+|++++||++++|++++|++|++++ ..|+++++||||++++
T Consensus 159 ~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~ 238 (519)
T TIGR02339 159 ASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLD 238 (519)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEe
Confidence 65 4689999999999999975 333358899999999999999999999999999987 4689999999999999
Q ss_pred eeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHH
Q 009082 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 246 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~ 325 (544)
++|++++++.++++.+++++++..+.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~r 318 (519)
T TIGR02339 239 APLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEK 318 (519)
T ss_pred ccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 326 FCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 326 Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
||++|||+++ +++++++.+|+|+.|++.++|+++|++|++|. .+..+||+|||+|+.+++|++|+++||++++++++
T Consensus 319 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~ 397 (519)
T TIGR02339 319 LARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCK-NPKAVTILLRGGTEHVVDELERSIQDALHVVASAL 397 (519)
T ss_pred HHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 88888889999999999999999999999986 48899999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecC
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 483 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~ 483 (544)
++|++|||||++|++|+++|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.
T Consensus 398 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~ 477 (519)
T TIGR02339 398 EDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVF 477 (519)
T ss_pred cCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999876778999999
Q ss_pred CCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 009082 484 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIM 524 (544)
Q Consensus 484 ~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~ 524 (544)
+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 478 ~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 478 TGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred CCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 99999999999999999999999999999999999999985
No 4
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-103 Score=851.17 Aligned_cols=506 Identities=27% Similarity=0.449 Sum_probs=477.6
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC--CCCEEEeccHHHHHHhccccChHHHHHHHHHHH
Q 009082 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~ 91 (544)
++++....++ +++++.|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++
T Consensus 2 ~~~~~~~~~~-~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 80 (517)
T cd03336 2 LKDGAQEEKG-ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKV 80 (517)
T ss_pred CCCccccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3455556566 5999999999999999999999999999999998 499999999999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCHHHHHHHHHHhhc
Q 009082 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVA 170 (544)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~-~~~~~l~~i~~t~l~ 170 (544)
|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++.-. +. .+++.|.++++|+++
T Consensus 81 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~~l~~ia~t~ls 158 (517)
T cd03336 81 QDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSS--DEEAFREDLLNIARTTLS 158 (517)
T ss_pred HHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999886210 11 246789999999999
Q ss_pred cccC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecC-CCCcccccCceEEEEEeec
Q 009082 171 SKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFAGGV 248 (544)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~-~~~~~~~~n~kIlll~~~l 248 (544)
||+. .++++|++++++|+.++.+ .+++++|++++++||++++|++++|+++++.+ ..||++++||||++++++|
T Consensus 159 sk~~~~~~~~l~~l~~~A~~~v~~----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~l 234 (517)
T cd03336 159 SKILTQDKEHFAELAVDAVLRLKG----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPM 234 (517)
T ss_pred ccccchhHHHHHHHHHHHHHHhhc----cCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCC
Confidence 9964 5689999999999999853 37888999999999999999999999999886 4579999999999999999
Q ss_pred ccccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 249 DTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 249 ~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
++++++. ++++.+++++++..+.+.|+++++++++.|++.|+++++++++|++.+++||.++||++++++++++|+|||
T Consensus 235 e~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa 314 (517)
T cd03336 235 DTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLA 314 (517)
T ss_pred CcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 9999987 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcC
Q 009082 328 RTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 405 (544)
Q Consensus 328 ~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~ 405 (544)
++|||+++ +++++++++|+|+.|++..+|+++|++|++|+ .++.+||+|||+|+.+++|.+|+++||++++++++++
T Consensus 315 ~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~ 393 (517)
T cd03336 315 LVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVA-AGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKD 393 (517)
T ss_pred HHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccC-CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999 89999899999999999999999999999997 4899999999999999999999999999999999999
Q ss_pred CeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCC
Q 009082 406 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG 485 (544)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~ 485 (544)
|++|||||++|++|++.|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|
T Consensus 394 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 473 (517)
T cd03336 394 TRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKG 473 (517)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999988788899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 486 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 486 ~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
+++||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 474 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 474 TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 999999999999999999999999999999999999999865
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.7e-104 Score=856.28 Aligned_cols=509 Identities=27% Similarity=0.492 Sum_probs=480.7
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++....++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 4 VLNQNTKRESG-RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 34666666666 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++ ++..+.+.|.++++|++++|
T Consensus 83 ~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~i~~t~l~sk 158 (525)
T TIGR02344 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIP----VDVNDDAAMLKLIQSCIGTK 158 (525)
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCCCCHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999876 25667888999999999999
Q ss_pred c-CCchhhHHHHHHHHHHHhCCCC---CCcccchh-hhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEE
Q 009082 173 Q-FGQEEILCPLIADACIQVCPKN---PANFNVDN-VRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (544)
Q Consensus 173 ~-~~~~~~ls~lv~~a~~~~~~~~---~~~~~~~~-I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~ 245 (544)
+ ..+.++|++++++|+..+++++ ...+|+++ |+|.+++||+++||++++|++|++++. .||++++||||++++
T Consensus 159 ~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (525)
T TIGR02344 159 FVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLD 238 (525)
T ss_pred cchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEe
Confidence 5 4578999999999999997643 22456654 899999999999999999999998763 689999999999999
Q ss_pred eeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHH
Q 009082 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 246 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~ 325 (544)
++|++.+++.++++.+++++++..+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~Ler 318 (525)
T TIGR02344 239 CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNR 318 (525)
T ss_pred cccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEe--cCCCCCCCCcc-ceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHH
Q 009082 326 FCRTTGAVAM--LCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 402 (544)
Q Consensus 326 Ia~~tGa~ii--l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~ 402 (544)
||++|||+++ +++++++.+|+ |+.|++.++|+++|++|++|+ .++.+||+|||+|+.+++|+||+++||+++++++
T Consensus 319 Ia~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~-~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~ 397 (525)
T TIGR02344 319 IARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECK-DPKACTILLRGASKDVLNEIERNLQDAMAVARNV 397 (525)
T ss_pred HHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCC-CCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 88899999999 999999999999999999987 4889999999999999999999999999999999
Q ss_pred hcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCeeeEe
Q 009082 403 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGID 481 (544)
Q Consensus 403 ~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~-~~~~gid 481 (544)
++++++|||||++|++||.+|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|+..|.++ +.++|+|
T Consensus 398 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 477 (525)
T TIGR02344 398 LLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGID 477 (525)
T ss_pred HhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEE
Confidence 999999999999999999999999888899999999999999999999999999999999999999999876 6789999
Q ss_pred cCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 482 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 482 ~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|...|
T Consensus 478 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 478 GETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred CCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 9999999999999999999999999999999999999999998765
No 6
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-103 Score=852.18 Aligned_cols=509 Identities=28% Similarity=0.462 Sum_probs=478.9
Q ss_pred cccc--ccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHH
Q 009082 13 MLKE--GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (544)
Q Consensus 13 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (544)
++++ +.+..++ .+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++++
T Consensus 13 ~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~ 91 (532)
T TIGR02343 13 IIKDQDKKKRLKG-LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSK 91 (532)
T ss_pred hhccccccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHH
Confidence 4566 4556566 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhc
Q 009082 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (544)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (544)
+|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++.. .+..+++.|.++++|+++
T Consensus 92 ~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~~l~~ia~t~l~ 169 (532)
T TIGR02343 92 SQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEIS--DDNNNKEPLIQAAKTSLG 169 (532)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccC--cCCCCHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999988632 134568899999999999
Q ss_pred cccC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEee
Q 009082 171 SKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (544)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~ 247 (544)
+|+. .+.+.|++++++|+..+.+.....+|+++|+|.+++||+++||++++|++|++++. .||+.++||||++++++
T Consensus 170 sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~ 249 (532)
T TIGR02343 170 SKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCP 249 (532)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEee
Confidence 9964 45899999999999998653223589999999999999999999999999999874 68999999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 248 l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
|++++++.+.++.+++++++..+.+.|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 250 le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia 329 (532)
T TIGR02343 250 FEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIA 329 (532)
T ss_pred ccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEe--cCCCCCCCCccceeEEEEEECC--eEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 328 RTTGAVAM--LCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 328 ~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
++|||+++ +++++++++|+|+.|++.++|+ ++|++|++|+ .++.+||+|||+|+.+++|+||+++||++++++++
T Consensus 330 ~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~-~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i 408 (532)
T TIGR02343 330 IATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCK-NSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLI 408 (532)
T ss_pred HHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 8899999999999999999987 4899999987 37899999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCeeeEec
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDL 482 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~-~~~~gid~ 482 (544)
+++++|||||++|++|+++|++++...++.+++++++||+||+.||++|++|||+|+.+++.+|++.|..+ +.++|+|+
T Consensus 409 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 488 (532)
T TIGR02343 409 KNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDC 488 (532)
T ss_pred hCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999753 56899999
Q ss_pred CCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhcc
Q 009082 483 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 525 (544)
Q Consensus 483 ~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~ 525 (544)
.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 489 ~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 489 LGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred CCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999999999999999999999999999999999999999964
No 7
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-103 Score=852.90 Aligned_cols=501 Identities=32% Similarity=0.515 Sum_probs=471.7
Q ss_pred ccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCc
Q 009082 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (544)
.++ +++++.|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~-~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 4 TSG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 345 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-hhhccCCCCCCCCHHHHHHHHHHhhccccCC-chh
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASKQFG-QEE 178 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~ 178 (544)
||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++ ++++ ++..+++.|.++++|+++||+.+ +.+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~----~~~~~~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSIS----VDNLGKESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----CCccCHHHHHHHHHHHhcccccchhHH
Confidence 99999999999999999999999999999999999999999986 7775 24457889999999999999654 468
Q ss_pred hHHHHHHHHHHHhCC---CCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecccccc
Q 009082 179 ILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSAT 253 (544)
Q Consensus 179 ~ls~lv~~a~~~~~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~ 253 (544)
+|++++++|+..++. ++...+++++|+|++++||++.+|++++|++|++++. +||++++||||++++++|++.++
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~ 238 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKM 238 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcc
Confidence 999999999999953 2322488999999999999999999999999998874 68999999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009082 254 ETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (544)
Q Consensus 254 ~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ 333 (544)
+.++++.++++.+++.+.+.|++++++++++|.+.|++|||++++|++.+++||.++||++++++++++|+|||++|||+
T Consensus 239 ~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ 318 (527)
T cd03335 239 KLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT 318 (527)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee--cCCC------CCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcC
Q 009082 334 AM--LCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 405 (544)
Q Consensus 334 ii--l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~ 405 (544)
++ ++++ +++++|+|+.|++.++|+++|++|++|+ .++++||+|||+|+.+++|++|+++||++++++++++
T Consensus 319 ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~-~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~ 397 (527)
T cd03335 319 LVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTK-KRSSASIILRGANDFMLDEMERSLHDALCVVKRTLES 397 (527)
T ss_pred EecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99 4433 4457999999999999999999999997 4899999999999999999999999999999999999
Q ss_pred CeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--------CCe
Q 009082 406 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG--------KTK 477 (544)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~--------~~~ 477 (544)
|++|||||++|++|+.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|++.|.++ +++
T Consensus 398 ~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~ 477 (527)
T cd03335 398 NSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKW 477 (527)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCce
Confidence 999999999999999999999888899999999999999999999999999999999999999999775 457
Q ss_pred eeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 478 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 478 ~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
+|+|+.+|+++||++.|||||+.+|.++|++|+|+|++|||||++|..+|
T Consensus 478 ~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 478 YGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred EeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 89999999999999999999999999999999999999999999998765
No 8
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-103 Score=849.03 Aligned_cols=498 Identities=29% Similarity=0.534 Sum_probs=474.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhHH
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (544)
.+++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||||+|
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~v 87 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVV 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCchhhHHHH
Q 009082 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPL 183 (544)
Q Consensus 105 lL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~l 183 (544)
+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++| ++..+++.|.++++|++++|+ +.+.++|+++
T Consensus 88 iLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 88 ILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIP----VDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999886 245688899999999999995 4678999999
Q ss_pred HHHHHHHhCCC-CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC---CCcccccCceEEEEEeeccccccccceEE
Q 009082 184 IADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---GSIKNMEKAKVAVFAGGVDTSATETKGTV 259 (544)
Q Consensus 184 v~~a~~~~~~~-~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~---~~~~~~~n~kIlll~~~l~~~~~~~~~~~ 259 (544)
+++|+..+++. ....|++++|+|+++.||++++|++++|++|++++. +||++++|+||++++++|+..+++.+.++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~ 243 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQV 243 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceE
Confidence 99999999762 123589999999999999999999999999999874 57999999999999999999999999999
Q ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc-----ChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeE
Q 009082 260 LIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (544)
Q Consensus 260 ~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i-----~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~i 334 (544)
.++++++++.+.++|+++++++++++++.|++||+++++| ++++++||.++||++++++++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 323 (517)
T TIGR02342 244 IVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKP 323 (517)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred e--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCC
Q 009082 335 M--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 412 (544)
Q Consensus 335 i--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGG 412 (544)
+ +++++++++|+|+.|++.++|+.+|+++++++++++.+||+|||+|+.+++|++|+++||+++++++++++++||||
T Consensus 324 i~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGG 403 (517)
T TIGR02342 324 IASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGG 403 (517)
T ss_pred EcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECc
Confidence 9 88899999999999999999999999999987545899999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCccccccc
Q 009082 413 AATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIST 492 (544)
Q Consensus 413 G~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~ 492 (544)
|++|++||++|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+++||++
T Consensus 404 Ga~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~ 483 (517)
T TIGR02342 404 GAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLE 483 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhh
Confidence 99999999999999888899999999999999999999999999999999999999999887788999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 493 MNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 493 ~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
.|||||+.+|+++++.|+|+|++|||||++|.++
T Consensus 484 ~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 484 EEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred ccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 9999999999999999999999999999999764
No 9
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-103 Score=849.38 Aligned_cols=508 Identities=29% Similarity=0.507 Sum_probs=479.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++.+..++ .+++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 4 LLKEGTDTSQG-KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 56888777777 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCC-CCCHHHHHHHHHHhhcc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMD-VRNTEEVIYRMKAAVAS 171 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~-~~~~~~l~~i~~t~l~s 171 (544)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++ +...+ -.+++.|.++++|+++|
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~-~~~~~~~~~~~~l~~ia~t~l~s 161 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVN-IDKEDKEEQRELLEKCAATALNS 161 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcc-cCcccccccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999886 22000 02477899999999999
Q ss_pred ccC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-----CCcccccCceEEEEE
Q 009082 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVFA 245 (544)
Q Consensus 172 k~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-----~~~~~~~n~kIlll~ 245 (544)
|+. .+.++|++++++|+.+++++ +++++|+|+++.||++.||++++|++|++++. .||++++||||++++
T Consensus 162 K~~~~~~~~l~~l~~~A~~~v~~~----~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~ 237 (522)
T cd03340 162 KLIASEKEFFAKMVVDAVLSLDDD----LDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLN 237 (522)
T ss_pred CcchhHHHHHHHHHHHHHHHhccc----CChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEe
Confidence 964 56899999999999999653 67889999999999999999999999999863 468999999999999
Q ss_pred eeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHH
Q 009082 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 246 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~ 325 (544)
++|++.+++.+.++.+++++++..+.+.|+++++++++++.+.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 238 ~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~r 317 (522)
T cd03340 238 VELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKR 317 (522)
T ss_pred CCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 326 FCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 326 Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
||++|||+++ +++++++.+|+|+.|++.++|+++|++|++|+ .++.+||+|||+++.+++|++|+++||++++++++
T Consensus 318 Ia~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i 396 (522)
T cd03340 318 VAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCP-KAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAI 396 (522)
T ss_pred HHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCC-CCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 88999999999999999999999999999997 48999999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-CeeeEec
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-TKVGIDL 482 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~-~~~gid~ 482 (544)
++|++|||||++|++++.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++ .++|+|+
T Consensus 397 ~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 476 (522)
T cd03340 397 KNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDI 476 (522)
T ss_pred cCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeC
Confidence 999999999999999999999998888999999999999999999999999999999999999999998876 7899999
Q ss_pred CCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 483 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 483 ~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
.+|+++||++.|||||+.+|+++++.|+|+|++|||||++|.+++
T Consensus 477 ~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 477 NNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 999999999999999999999999999999999999999998753
No 10
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.3e-103 Score=850.61 Aligned_cols=508 Identities=33% Similarity=0.594 Sum_probs=482.5
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++.+..++ .+++..|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~-~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 81 (517)
T cd03343 3 ILKEGTQRTSG-RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 81 (517)
T ss_pred ccCCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 35777777777 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
++++||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+ ++..+++.|.++++|++++|
T Consensus 82 ~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~----v~~~~~~~l~~va~ts~~sk 157 (517)
T cd03343 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIK----VDPDDKDTLRKIAKTSLTGK 157 (517)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcc----cCCCCHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999886 24457899999999999999
Q ss_pred cC-CchhhHHHHHHHHHHHhCCCCC--CcccchhhhhhhcCCCCCCCceeEeeEEEeecC--CCCcccccCceEEEEEee
Q 009082 173 QF-GQEEILCPLIADACIQVCPKNP--ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGG 247 (544)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~--~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~--~~~~~~~~n~kIlll~~~ 247 (544)
+. .+.++|++++++|+.++++++. ..+|+++|+|.+++||++++|++++|++|++++ ..|++.++||||++++++
T Consensus 158 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~ 237 (517)
T cd03343 158 GAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAP 237 (517)
T ss_pred chhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEecc
Confidence 64 4678999999999999976532 258889999999999999999999999999997 358999999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 248 l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
|++.+++.++++.+++++++..+.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 238 Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia 317 (517)
T cd03343 238 LEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLA 317 (517)
T ss_pred ccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcC
Q 009082 328 RTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 405 (544)
Q Consensus 328 ~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~ 405 (544)
++|||+++ +++++++.+|+|+.|++.++|+++|++|++|. .++.+||+|||+|+.+++|++|+++||++++|+++++
T Consensus 318 ~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~ 396 (517)
T cd03343 318 RATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCK-NPKAVTILLRGGTEHVVDELERALEDALRVVADALED 396 (517)
T ss_pred HHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCC-CCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999 88898899999999999999999999999987 4789999999999999999999999999999999999
Q ss_pred CeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCC
Q 009082 406 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG 485 (544)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~ 485 (544)
|++|||||++|++|+++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|
T Consensus 397 ~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 476 (517)
T cd03343 397 GKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTG 476 (517)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999987677899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 486 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 486 ~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
++.||++.|||||+.+|+++|+.|+|+|++|||||++|+.+
T Consensus 477 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 517 (517)
T cd03343 477 EVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence 99999999999999999999999999999999999999753
No 11
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.4e-103 Score=848.72 Aligned_cols=509 Identities=28% Similarity=0.460 Sum_probs=479.4
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC-----CCCEEEeccHHHHHHhccccChHHHHHH
Q 009082 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH-----LDKLFVTNDAATIVNELEVQHPAAKLLV 86 (544)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~-----~g~~~iTnDg~tIl~~l~~~hP~a~ll~ 86 (544)
.+++++.+..++ ++++..|+.||..++++++|||||+|++|||++. .|+++|||||+|||++|+++||+++|++
T Consensus 9 ~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~ 87 (533)
T PTZ00212 9 QVLKQGAQEEKG-ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILV 87 (533)
T ss_pred HHhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHH
Confidence 356888777777 6999999999999999999999999999999998 6999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHH
Q 009082 87 LAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMK 166 (544)
Q Consensus 87 ~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~ 166 (544)
+++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++.+... -+..+++.|.++++
T Consensus 88 ~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~-~~~~~~~~l~~va~ 166 (533)
T PTZ00212 88 DISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGS-DEEKFKEDLLNIAR 166 (533)
T ss_pred HHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCc-cchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886210 01112678999999
Q ss_pred HhhccccC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-CCcccccCceEEEE
Q 009082 167 AAVASKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVF 244 (544)
Q Consensus 167 t~l~sk~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-~~~~~~~n~kIlll 244 (544)
|+++||+. .+.+.|++++++|+..+.+ .+++++|++++++||++++|++++|+++++++. .||++++||||+++
T Consensus 167 t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~ 242 (533)
T PTZ00212 167 TTLSSKLLTVEKDHFAKLAVDAVLRLKG----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVA 242 (533)
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHhc----cCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEE
Confidence 99999965 4578999999999999854 278889999999999999999999999998763 58999999999999
Q ss_pred Eeecccccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHH
Q 009082 245 AGGVDTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFEL 323 (544)
Q Consensus 245 ~~~l~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~l 323 (544)
+++|++++++. ++++.+++++++..+.+.|+++++++++.|++.|+++++++++|++.+++||.++||+++++++++++
T Consensus 243 ~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l 322 (533)
T PTZ00212 243 NTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGM 322 (533)
T ss_pred eCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999987 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHH
Q 009082 324 RRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKA 401 (544)
Q Consensus 324 e~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~ 401 (544)
+|||++|||+++ +++++++++|+|+.|++..+|+++|++|++|. .++++||+|||+|+.+++|+||+++||++++++
T Consensus 323 ~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~ 401 (533)
T PTZ00212 323 ERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCA-KGEACTIVLRGASTHILDEAERSLHDALCVLSQ 401 (533)
T ss_pred HHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccC-CCCEEEEEEECCChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999 88898899999999999999999999999997 489999999999999999999999999999999
Q ss_pred HhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEe
Q 009082 402 MCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGID 481 (544)
Q Consensus 402 ~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid 481 (544)
++++|++|||||++|++|+.+|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|
T Consensus 402 ~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d 481 (533)
T PTZ00212 402 TVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGID 481 (533)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCcccee
Confidence 99999999999999999999999998888999999999999999999999999999999999999999998877889999
Q ss_pred cCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 482 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 482 ~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 482 ~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 482 MEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred ccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 9999999999999999999999999999999999999999998864
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.7e-103 Score=848.79 Aligned_cols=508 Identities=28% Similarity=0.457 Sum_probs=476.9
Q ss_pred cccccc--ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHH
Q 009082 13 MLKEGH--KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (544)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (544)
++++++ +...+ +++++.|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|++++++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~ 87 (526)
T cd03339 9 IVREQEKKKRLKG-LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSK 87 (526)
T ss_pred EecCCCccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHH
Confidence 457763 44455 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhc
Q 009082 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (544)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (544)
+|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++.+.. .+..+.+.|.++++|+++
T Consensus 88 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~~l~~ia~tsl~ 165 (526)
T cd03339 88 SQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIE--FSPDNKEPLIQTAMTSLG 165 (526)
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccC--CCcccHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999988632 133478899999999999
Q ss_pred cccCC-chhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEee
Q 009082 171 SKQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (544)
Q Consensus 171 sk~~~-~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~ 247 (544)
+|+.+ +.+.|++++++|+..+.+.....+|++.|+|.+++||+++||++++|++|++++. .||+.++||||++++++
T Consensus 166 sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~ 245 (526)
T cd03339 166 SKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCP 245 (526)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEec
Confidence 99644 5789999999999998653323578899999999999999999999999999885 68999999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 248 l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
|++++++.+.++.+++++++..+.++|+++++++++++++.|++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 246 le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa 325 (526)
T cd03339 246 FEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIA 325 (526)
T ss_pred ccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEe--cCCCCCCCCccceeEEEEEECC--eEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 328 RTTGAVAM--LCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 328 ~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
++|||+++ +++++++.+|+|+.|++..+|. ++|++|++|+ .++.+||+|||+|+.+++|++|+++||++++++++
T Consensus 326 ~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~-~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~ 404 (526)
T cd03339 326 IATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCP-NSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLI 404 (526)
T ss_pred HHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 8999999999999999999985 6889999997 48899999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCeeeEec
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDL 482 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~-~~~~~gid~ 482 (544)
++|++|||||++|++++++|++++...++.+++++++||+||+.||++|++|||+|+.+++.+|+..|.+ ++.++|+|+
T Consensus 405 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 484 (526)
T cd03339 405 RDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDC 484 (526)
T ss_pred hCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeec
Confidence 9999999999999999999999988889999999999999999999999999999999999999999965 356899999
Q ss_pred CCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 009082 483 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIM 524 (544)
Q Consensus 483 ~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~ 524 (544)
.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 485 ~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 485 LGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 999999999999999999999999999999999999999873
No 13
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-104 Score=769.54 Aligned_cols=513 Identities=27% Similarity=0.454 Sum_probs=488.1
Q ss_pred ccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHH
Q 009082 9 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLA 88 (544)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~ 88 (544)
....++++++..+.|. -.+.+|+.+|..+++.++|||||+|+||+|+++.|+++|||||+||||-|++-||+||.+++.
T Consensus 4 ~~ii~lkegtd~sqGk-~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdi 82 (543)
T KOG0361|consen 4 PPIILLKEGTDPSQGK-GQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDI 82 (543)
T ss_pred CCEEEeecccCcccCc-hhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHH
Confidence 4566789999998884 777999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCC----CHHHHHHH
Q 009082 89 GKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVR----NTEEVIYR 164 (544)
Q Consensus 89 ~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~----~~~~l~~i 164 (544)
+++||.++||||||||+|++++|+++-.+++.|+||..|+++|+.|...|++.++++++.. +.. -++-|.++
T Consensus 83 a~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i----~~~~~~~~r~lL~Kc 158 (543)
T KOG0361|consen 83 ARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEI----DGSSKTELRELLEKC 158 (543)
T ss_pred HhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEe----cccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998762 222 26788999
Q ss_pred HHHhhcccc-CCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecC-----CCCcccccC
Q 009082 165 MKAAVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-----VGSIKNMEK 238 (544)
Q Consensus 165 ~~t~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~-----~~~~~~~~n 238 (544)
+.|+++||+ .++.++|+++++||+..+.. ..+++.|-|.|++||+++||.+++|+.|++.| ..+|+++.|
T Consensus 159 A~T~lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~N 234 (543)
T KOG0361|consen 159 AATALSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLN 234 (543)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCC
Confidence 999999994 66789999999999998752 26788999999999999999999999999876 457999999
Q ss_pred ceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEec
Q 009082 239 AKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS 318 (544)
Q Consensus 239 ~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v 318 (544)
|||+++|..||.+..+.++++.+.++++++.+.+.||+.+.++++++...|++||++.-.|.|.+.+||++++|.|-.|+
T Consensus 235 pkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV 314 (543)
T KOG0361|consen 235 PKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRV 314 (543)
T ss_pred ceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHH
Q 009082 319 SKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGV 396 (544)
Q Consensus 319 ~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal 396 (544)
+.+||.|+..++|+++. ..++.++.||.|..|++.++|++||.+|++|+ ..+.||++|||+.++.++|.+|++|||+
T Consensus 315 ~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp-~aktcTliLRGgaeqfieE~eRSlHDAI 393 (543)
T KOG0361|consen 315 PEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCP-KAKTCTLILRGGAEQFIEETERSLHDAI 393 (543)
T ss_pred CHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCC-ccceeEEEEeccHHHHHHHHhhhhhhHH
Confidence 99999999999999999 78899999999999999999999999999998 4899999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 009082 397 NTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKT 476 (544)
Q Consensus 397 ~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~ 476 (544)
+++|.++++..||+|||++||++|++||+++..+.+++|+.+.+|++|||.|||+||+|+|+|..+++++||..|.+|+.
T Consensus 394 mIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~ 473 (543)
T KOG0361|consen 394 MIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEK 473 (543)
T ss_pred HHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCC
Q 009082 477 KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGP 531 (544)
Q Consensus 477 ~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~ 531 (544)
|+|+|..++.+.|+++.+||||..||++++..|+|+|++||.+|+.|...+..+.
T Consensus 474 w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~ 528 (543)
T KOG0361|consen 474 WYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSA 528 (543)
T ss_pred eeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCC
Confidence 9999999999999999999999999999999999999999999999988765443
No 14
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.7e-102 Score=836.95 Aligned_cols=507 Identities=26% Similarity=0.440 Sum_probs=476.9
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCC--CCEEEeccHHHHHHhccccChHHHHHHHHHHH
Q 009082 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL--DKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~--g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~ 91 (544)
++++.+..++ ++++..|+.||..++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++
T Consensus 3 ~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 3 FKDNAQEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred ccCCCccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4566666666 58999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCHHHHHHHHHHhhc
Q 009082 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVA 170 (544)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~-~~~~~l~~i~~t~l~ 170 (544)
|++++||||||+|+|+++||++|.+|+++|+||+.|++||+.|.+.++++|++++++... +. .+++.|.++++|+++
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~~L~~ia~t~l~ 159 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGS--DKTKFRDDLLNIARTTLS 159 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccC--cccccHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999886211 11 146889999999999
Q ss_pred cccC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-CCcccccCceEEEEEeec
Q 009082 171 SKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGV 248 (544)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-~~~~~~~n~kIlll~~~l 248 (544)
+|+. .+.+.|++++++|+..+.+. .++++|++.+++|+++++|++++|+++++.+. .||++++||||++++++|
T Consensus 160 ski~~~~~~~~s~l~~~av~~i~~~----~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~L 235 (519)
T TIGR02341 160 SKILSQHKDHFAQLAVDAVLRLKGS----GNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPM 235 (519)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccC----CChhheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCC
Confidence 9965 45789999999999998432 46678999999999999999999999999874 579999999999999999
Q ss_pred ccccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 249 DTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 249 ~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
++.+++. ++++.+++++++..+.+.|+++++++++.|++.|+++++++++|++.+++||.+++|++++++++.+|+|||
T Consensus 236 e~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia 315 (519)
T TIGR02341 236 DTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLA 315 (519)
T ss_pred CCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 9999986 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcC
Q 009082 328 RTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 405 (544)
Q Consensus 328 ~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~ 405 (544)
++|||+++ +++++++++|+|+.|++..+|+++|.+|++|+ .++.+||+|||+|+.+++|++|+++||++++++++++
T Consensus 316 ~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~ 394 (519)
T TIGR02341 316 LVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVK-LGEACTIVLRGATQQILDESERSLHDALCVLSQTVKE 394 (519)
T ss_pred HHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999 88899899999999999999999999999997 4899999999999999999999999999999999999
Q ss_pred CeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCC
Q 009082 406 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG 485 (544)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~ 485 (544)
+++||||||+|++|+++|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|
T Consensus 395 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 474 (519)
T TIGR02341 395 SRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEG 474 (519)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999988777899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCC
Q 009082 486 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 528 (544)
Q Consensus 486 ~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~ 528 (544)
++.||++.|||||+.+|+++++.|+|+|++|||||++|..+|.
T Consensus 475 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 475 EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred cccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999873
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-102 Score=838.28 Aligned_cols=507 Identities=30% Similarity=0.487 Sum_probs=479.3
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++.++.++ .+++..|+.||..++++++|||||+|++|||+++.| ++|||||+|||++|+++||+++|+++++++|
T Consensus 6 ~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q 83 (522)
T TIGR02345 6 LLKEGTDTSQG-KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQ 83 (522)
T ss_pred hhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHH
Confidence 56888777777 489999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++| +...+..+.+.|.++++|+++||
T Consensus 84 ~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~-~~~~~~~~~~~l~~va~tsl~sK 162 (522)
T TIGR02345 84 DSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVT-IDEVKGEQREVLEKCAATALNSK 162 (522)
T ss_pred HHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCcccccHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999886 22111235688999999999999
Q ss_pred cC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-----CCcccccCceEEEEEe
Q 009082 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVFAG 246 (544)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-----~~~~~~~n~kIlll~~ 246 (544)
+. .++++|++++++|+.+++++ .+|+++|+|++++||+++||++++|++|++++. +||++++||||+++++
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 163 LIAHEKEFFSKMIVDAVLQLDID---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred cccchHHHHHHHHHHHHHHHhhc---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 64 56899999999999999754 388999999999999999999999999998863 4689999999999999
Q ss_pred eccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHH
Q 009082 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRF 326 (544)
Q Consensus 247 ~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~I 326 (544)
+|++.+.+.+..+.+++++++..+.+.|++.++++++++++.|+++|++++++++.+++||.++||+++++++++++++|
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhc
Q 009082 327 CRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 404 (544)
Q Consensus 327 a~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~ 404 (544)
+++|||+++ +++++++.+|+|+.|++.++++++|.+|++++ .++++||+|||+|+.+++|++|+++||+++++++++
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~-~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~ 398 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCP-HAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALK 398 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCC-CCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 88899899999999999999999999999997 478999999999999999999999999999999999
Q ss_pred CCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCC
Q 009082 405 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLEN 484 (544)
Q Consensus 405 ~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~ 484 (544)
++++|||||++|++++++|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+
T Consensus 399 ~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~ 478 (522)
T TIGR02345 399 ARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINT 478 (522)
T ss_pred CCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCC
Confidence 98899999999999999999998888999999999999999999999999999999999999999998777789999999
Q ss_pred CcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 485 GVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 485 ~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
|+++||++.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 479 ~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 479 EDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 999999999999999999999999999999999999999774
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-101 Score=838.80 Aligned_cols=497 Identities=30% Similarity=0.543 Sum_probs=473.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhHH
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (544)
.++++.|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||++
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~v 86 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVV 86 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCchhhHHHH
Q 009082 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPL 183 (544)
Q Consensus 105 lL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~l 183 (544)
+|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+ ++..+.+.|.++++|+++||+ +.++++|+++
T Consensus 87 vLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~----v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 87 VLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIP----VDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999886 245678899999999999995 4578899999
Q ss_pred HHHHHHHhCCCCC-CcccchhhhhhhcCCCCCCCceeEeeEEEeecCCC---CcccccCceEEEEEeeccccccccceEE
Q 009082 184 IADACIQVCPKNP-ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG---SIKNMEKAKVAVFAGGVDTSATETKGTV 259 (544)
Q Consensus 184 v~~a~~~~~~~~~-~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~---~~~~~~n~kIlll~~~l~~~~~~~~~~~ 259 (544)
+++|+.++++++. ..+|+++|+|.+..||++++|++++|++|++++.+ ||+.++|+|+++++|+|++.+++.+.++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~ 242 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNI 242 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceE
Confidence 9999999987542 36899999999999999999999999999999854 4899999999999999999999999999
Q ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc-----ChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeE
Q 009082 260 LIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (544)
Q Consensus 260 ~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i-----~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~i 334 (544)
.+++++++..+.++|+++++++++++++.|++|||++++| ++++++||+++||++++++++++|+|||++|||++
T Consensus 243 ~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~i 322 (515)
T cd03338 243 VVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKP 322 (515)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred e--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCC
Q 009082 335 M--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 412 (544)
Q Consensus 335 i--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGG 412 (544)
+ +++++++.+|+|+.|++.++|+++|++|++|+++++.+||+|||+|+.+++|++|+++||++++++++++|++||||
T Consensus 323 i~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGG 402 (515)
T cd03338 323 VASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGG 402 (515)
T ss_pred ecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECC
Confidence 9 88999899999999999999999999999997436899999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCccccccc
Q 009082 413 AATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIST 492 (544)
Q Consensus 413 G~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~ 492 (544)
|++|++|+++|++++...++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+++||++
T Consensus 403 G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~ 482 (515)
T cd03338 403 GAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILE 482 (515)
T ss_pred CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhh
Confidence 99999999999999888889999999999999999999999999999999999999999877778999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhchhhhhcc
Q 009082 493 MNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 525 (544)
Q Consensus 493 ~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~ 525 (544)
.|||||+.+|+++++.|+|+|++|||||++|++
T Consensus 483 ~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 483 ENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 999999999999999999999999999999864
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.4e-101 Score=836.48 Aligned_cols=503 Identities=30% Similarity=0.501 Sum_probs=471.6
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCC
Q 009082 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (544)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (544)
..++ +++++.|+.||..|+++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 7 ~~~~-~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 7 RTSG-QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred eecH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 3345 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhh-hhccCCCCCCCCHHHHHHHHHHhhccccC-Cch
Q 009082 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEEL-VEEGSENMDVRNTEEVIYRMKAAVASKQF-GQE 177 (544)
Q Consensus 100 ttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~ 177 (544)
|||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++. +++ ++..+.+.|.++++|+++||+. .++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVS----VDELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----CCcccHHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999999999999999999999999999875 664 2445788999999999999964 468
Q ss_pred hhHHHHHHHHHHHhCC---CCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccc
Q 009082 178 EILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSA 252 (544)
Q Consensus 178 ~~ls~lv~~a~~~~~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~ 252 (544)
++|++++++|+..++. ++...+++++|++++++||++++|++++|++|++++. +||++++||||++++++|++.+
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~ 241 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQK 241 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCc
Confidence 9999999999999962 2333588999999999999999999999999998874 6899999999999999999999
Q ss_pred cccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 253 TETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 253 ~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
++.++++.++++.+++.+.+.|++++++++++|++.+++||+++++|++.+++||.++||++++++++++|+|||++|||
T Consensus 242 ~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa 321 (536)
T TIGR02340 242 MALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGG 321 (536)
T ss_pred ccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEe--cCC------CCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhc
Q 009082 333 VAM--LCQ------PNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 404 (544)
Q Consensus 333 ~ii--l~~------l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~ 404 (544)
+++ +.+ ++++.+|+|+.|++.++|+++|++|++++ .++++||+|||+|+.+++|++|+++||+++++++++
T Consensus 322 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~ 400 (536)
T TIGR02340 322 TLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTK-GRKSASIILRGANDFMLDEMERSLHDALCVVKRTLE 400 (536)
T ss_pred EEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999 433 34556999999999999999999999987 478999999999999999999999999999999999
Q ss_pred CCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--------CC
Q 009082 405 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG--------KT 476 (544)
Q Consensus 405 ~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~--------~~ 476 (544)
+|++|||||++|++|+++|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|+..|.++ +.
T Consensus 401 ~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~ 480 (536)
T TIGR02340 401 SNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLK 480 (536)
T ss_pred CCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCc
Confidence 9999999999999999999998888889999999999999999999999999999999999999998764 34
Q ss_pred eeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCC
Q 009082 477 KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 528 (544)
Q Consensus 477 ~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~ 528 (544)
++|+|+.+|+++||++.|||||+.+|+++|++|+|+|++|||||++|..+|.
T Consensus 481 ~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~ 532 (536)
T TIGR02340 481 WYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPE 532 (536)
T ss_pred eEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 7899999999999999999999999999999999999999999999988763
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-99 Score=813.44 Aligned_cols=475 Identities=27% Similarity=0.445 Sum_probs=447.8
Q ss_pred cccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhh
Q 009082 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (544)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (544)
++.+..++ .+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|+++
T Consensus 3 ~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 3 PKAEVLRR-GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCcccccH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 34455556 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCHHHHHHHHHHhhcccc-
Q 009082 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVASKQ- 173 (544)
Q Consensus 96 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~-~~~~~l~~i~~t~l~sk~- 173 (544)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++.+. +. .+++.|.++++|++++|+
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v----~~~~~~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPV----EIDTDRELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999999999999999999998752 22 478899999999999995
Q ss_pred CCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecccc
Q 009082 174 FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 174 ~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~ 251 (544)
..+.++|++++++|+..+++++. .||+++|+|++++||++++|++++|++|++++. .||++++||||++++++|++.
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~~-~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~ 236 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPDE-PIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYE 236 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCC-ccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCC
Confidence 46789999999999999987542 589999999999999999999999999998874 589999999999999999999
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tG 331 (544)
+++.+.++.++ |||++++|++.+++||.++||++++++++++|+|||++||
T Consensus 237 ~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 237 KTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred ccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 88877665543 9999999999999999999999999999999999999999
Q ss_pred CeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEE
Q 009082 332 AVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIV 409 (544)
Q Consensus 332 a~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vv 409 (544)
|+++ +++++++++|+|+.|++..+|+++|++|++|+ .++.+||+|||+|+.+++|+||+++||++++++++++|++|
T Consensus 288 a~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 288 GVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVK-NPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CEEecccccCChhhCcccceEEEEEECCeEEEEEECCC-CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 9999 89999999999999999999999999999997 48999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccc
Q 009082 410 PGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCAD 489 (544)
Q Consensus 410 pGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d 489 (544)
|||||+|++|+.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+++|
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d 446 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMD 446 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccc
Confidence 99999999999999999888899999999999999999999999999999999999999999887778999999999999
Q ss_pred cccCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 490 ISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 490 ~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
|++.|||||+.+|+++|+.|+|+|++|||||++|+.+
T Consensus 447 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 447 PESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred hhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9999999999999999999999999999999999764
No 19
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-101 Score=743.75 Aligned_cols=497 Identities=28% Similarity=0.537 Sum_probs=476.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhHH
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (544)
++.+.+||+|++++++.++|||||+||||||+++.|+++|||||+|||+.|.+-||+++|+++++.+||.++||||||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVV 104 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVV 104 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCchhhHHHH
Q 009082 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPL 183 (544)
Q Consensus 105 lL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~l 183 (544)
+|+++||+.+.+|+++|+||+.|.+.|+.|.+.++++|++++.| ++++|++.|.+-+.|+|+||+ +.|+..++++
T Consensus 105 ilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~----velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 105 ILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVP----VELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred EehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCC----cccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999986 368899999999999999994 7789999999
Q ss_pred HHHHHHHhCC-CCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccccccceEEE
Q 009082 184 IADACIQVCP-KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (544)
Q Consensus 184 v~~a~~~~~~-~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~~~ 260 (544)
.++|+.++.. ....++|+.+|+|.|..||.++|+++++|++|+.... .-|++++++||-++.|.+.+++++...++.
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~ii 260 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQII 260 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceE
Confidence 9999999854 3445799999999999999999999999999997763 368999999999999999999999999999
Q ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc-----ChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe
Q 009082 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (544)
Q Consensus 261 i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i-----~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii 335 (544)
++++.+++...++|++|+.++|++|++.|+||++.|++| +|++++||++.+|||++.+.++|+|.+|+.+|+.|+
T Consensus 261 v~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pi 340 (534)
T KOG0358|consen 261 VNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPI 340 (534)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeec
Confidence 999999999999999999999999999999999999876 889999999999999999999999999999999999
Q ss_pred --cCCCCCCCCccceeEEEEEECC-eEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCC
Q 009082 336 --LCQPNPDDLGYVDSVSVEEIGG-ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 412 (544)
Q Consensus 336 --l~~l~~~~lG~~~~v~~~~ig~-~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGG 412 (544)
++.++++.+|+++.+++...+| .++..+.++.+.++++||++||+++..++|.+|++|||||++|++++.+.++|||
T Consensus 341 a~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 341 ADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred chhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 9999999999999999886554 4888999887668999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCccccccc
Q 009082 413 AATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIST 492 (544)
Q Consensus 413 G~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~ 492 (544)
|+.|+.+|..|.+++....|.+.|++++||+|||.||.+|++|+|++|+.++++||..|.+|+.++||+.+.|.+.|+.+
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhchhhhhcc
Q 009082 493 MNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 525 (544)
Q Consensus 493 ~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~ 525 (544)
..|+.|+.|-.+++..|+|++.+||+||+|+.+
T Consensus 501 e~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred HhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999999865
No 20
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-98 Score=802.05 Aligned_cols=464 Identities=61% Similarity=0.982 Sum_probs=439.9
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCch
Q 009082 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (544)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (544)
.+.++++..|+.+|..|++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhHH
Q 009082 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181 (544)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ls 181 (544)
|+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++.+.+. +..+.+.+.++++|+++||..+++++|+
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIE--DLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccC--CccCHHHHHHHHHHHhcccccchHHHHH
Confidence 99999999999999999999999999999999999999999999876332 4567889999999999999767889999
Q ss_pred HHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCcccccCceEEEEEeeccccccccceEEEE
Q 009082 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLI 261 (544)
Q Consensus 182 ~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i 261 (544)
+++++|+.++++++...|++++|+|++++||+++||++++|++|++.+..++++++||||++++++|++
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~----------- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDI----------- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccC-----------
Confidence 999999999986532358999999999999999999999999999888778899999999999999875
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--cCCC
Q 009082 262 HNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--LCQP 339 (544)
Q Consensus 262 ~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii--l~~l 339 (544)
|++||+++++|++.+++||+++||++++++++++|+|||++|||+++ ++++
T Consensus 231 ---------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l 283 (472)
T cd03341 231 ---------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAP 283 (472)
T ss_pred ---------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccC
Confidence 89999999999999999999999999999999999999999999999 8888
Q ss_pred CCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHH
Q 009082 340 NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIEL 419 (544)
Q Consensus 340 ~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l 419 (544)
+++++|+|+.|++.++|+++|++|+++...++.+||+|||+|+.+++|+||+++||++++++++++|++|||||++|+++
T Consensus 284 ~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~l 363 (472)
T cd03341 284 TPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIEL 363 (472)
T ss_pred CHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHH
Confidence 88999999999999999999999999863378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCC--cccccccCcccc
Q 009082 420 ARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG--VCADISTMNVWD 497 (544)
Q Consensus 420 ~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~--~i~d~~~~gi~d 497 (544)
+++|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+| +++||++.||||
T Consensus 364 s~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~d 443 (472)
T cd03341 364 AKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFD 443 (472)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhcccee
Confidence 999999988888999999999999999999999999999999999999999977777899999999 999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhchhhhhcc
Q 009082 498 LYVTKFFALKYAADAACTVLRVDQIIMA 525 (544)
Q Consensus 498 p~~vk~~~l~~A~e~~~~iL~iD~ii~~ 525 (544)
|+.+|+++|+.|+|+|++|||||++|..
T Consensus 444 p~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 444 HLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999865
No 21
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-98 Score=750.11 Aligned_cols=534 Identities=54% Similarity=0.845 Sum_probs=509.5
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh
Q 009082 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (544)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP 80 (544)
|-+..|+.+....+++|.++.++.+++...|+.||++++++++|+|||+||+|||+|+.|++.+|||.+||+++|+++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHH
Q 009082 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE 160 (544)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~ 160 (544)
+||||+++++.|+++.||||++||+|+++||++|.+||..|++|..|++||+.|.+.+.+.|+++.+..+. |..|.+
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~--d~~d~~- 157 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIG--DLEDKE- 157 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcc--cccChH-
Confidence 99999999999999999999999999999999999999999999999999999999999999998776443 666666
Q ss_pred HHHHHHHhhccccCCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCcccccCce
Q 009082 161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240 (544)
Q Consensus 161 l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~~~n~k 240 (544)
+.++|++.+|...+.+++++++++|+..+.+.+. |++++|+++|+.||++++|+++.|++|++.+.+.+++-+.+|
T Consensus 158 --~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~--FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~ar 233 (537)
T KOG0362|consen 158 --WALRSVIMSKQYGNEDFLTKLVAKACVSILPLMS--FNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDAR 233 (537)
T ss_pred --HHHHHHHHHhhcchHHHHHHHHHHHHHhhccccc--ccccceEEEEEecCCcccceeeEEEEeccccCCcccccccce
Confidence 7889999999888899999999999999988754 999999999999999999999999999999998888889999
Q ss_pred EEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCH
Q 009082 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (544)
Q Consensus 241 Illl~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~ 320 (544)
|++++||+++..+++++++.+++++++..|.+.|+..++..++.|...|+++|++.+.+++++++||++++|++++..++
T Consensus 234 vAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk 313 (537)
T KOG0362|consen 234 VAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSK 313 (537)
T ss_pred eEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHH
Q 009082 321 FELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNT 398 (544)
Q Consensus 321 ~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~ 398 (544)
.||+|+|+..||+++ +..+.+..+|+|++|..+++|+.+++.|++....+++.|++|||++...+|+.||+++|++++
T Consensus 314 ~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~t 393 (537)
T KOG0362|consen 314 FDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNT 393 (537)
T ss_pred hhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHH
Confidence 999999999999999 888888999999999999999999999998754578999999999999999999999999999
Q ss_pred HHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCee
Q 009082 399 YKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV 478 (544)
Q Consensus 399 l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~ 478 (544)
.+...++++++||+|++|++|+..|.+++...+|..|+++++||+||+.+|++|++|+|+++.+++++|+..|. +..+.
T Consensus 394 yK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~ 472 (537)
T KOG0362|consen 394 YKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNL 472 (537)
T ss_pred hhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 44567
Q ss_pred eEecCCC-cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCCCCCCCCC
Q 009082 479 GIDLENG-VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQPGGGMDED 544 (544)
Q Consensus 479 gid~~~~-~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~~~~~~~~~~~~ 544 (544)
|+|+.-. ...|+.+.||||.+..|.+++++|+|+|.++|++|+||++++.+||+||. |+ +|||+
T Consensus 473 g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~~-~~-~~d~~ 537 (537)
T KOG0362|consen 473 GMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPPG-KK-PDDEK 537 (537)
T ss_pred eeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCCC-CC-CCCCC
Confidence 8888766 48899999999999999999999999999999999999999999999994 44 99985
No 22
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-97 Score=795.96 Aligned_cols=465 Identities=29% Similarity=0.543 Sum_probs=435.6
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++....++ ++++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 4 VLNQNTKRESG-RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 34666666556 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++ ++..|.+.|.++++|++++|
T Consensus 83 ~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~i~~t~l~sK 158 (480)
T cd03337 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIP----VDVNDRAQMLKIIKSCIGTK 158 (480)
T ss_pred HHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cccCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999875 35668899999999999999
Q ss_pred cC-CchhhHHHHHHHHHHHhCCCC--C-Ccccch-hhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEE
Q 009082 173 QF-GQEEILCPLIADACIQVCPKN--P-ANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (544)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~--~-~~~~~~-~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~ 245 (544)
+. .+.+.|++++++|+..++++. . .++|++ +|+|.+++||+++||++++|++|++++. +||++++||||++++
T Consensus 159 ~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (480)
T cd03337 159 FVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLD 238 (480)
T ss_pred cchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEe
Confidence 64 568899999999999997642 1 136665 4899999999999999999999999874 589999999999999
Q ss_pred eeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHH
Q 009082 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 246 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~ 325 (544)
++|++ ||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~r 277 (480)
T cd03337 239 CPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNR 277 (480)
T ss_pred cCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHH
Confidence 99875 9999999999999999999999999999999999
Q ss_pred HHHHhCCeEe--cCCCCCCCCcc-ceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHH
Q 009082 326 FCRTTGAVAM--LCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 402 (544)
Q Consensus 326 Ia~~tGa~ii--l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~ 402 (544)
||++|||+++ +++++++.+|+ |+.+++..+++++|++|++|+ .++.+||+|||+|+.+++|+||+++||+++++++
T Consensus 278 Ia~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~-~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~ 356 (480)
T cd03337 278 IARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECK-DPKACTILLRGASKDVLNEVERNLQDAMAVARNI 356 (480)
T ss_pred HHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 88899999999 677788888889999999997 4899999999999999999999999999999999
Q ss_pred hcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCeeeEe
Q 009082 403 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGID 481 (544)
Q Consensus 403 ~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~-~~~~gid 481 (544)
++++++|||||++|++||++|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|++.|.++ +.++|+|
T Consensus 357 ~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 436 (480)
T cd03337 357 ILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGID 436 (480)
T ss_pred hcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECee
Confidence 999999999999999999999999888899999999999999999999999999999999999999999876 6789999
Q ss_pred cCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 009082 482 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIM 524 (544)
Q Consensus 482 ~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~ 524 (544)
+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 437 ~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 437 GETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred ccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999999999999999999999999874
No 23
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-96 Score=710.42 Aligned_cols=513 Identities=27% Similarity=0.445 Sum_probs=483.1
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC--CCCEEEeccHHHHHHhccccChHHHHHHH
Q 009082 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVL 87 (544)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~ 87 (544)
+..+++++..+.++ +.++.+.+.++..++++|||||||+||+||++.. .|.+.+||||+|||+++.+++|.||++++
T Consensus 3 p~~i~~~~~~eErg-e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 3 PVQIFKDGATEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred hhhhhcccchhhhh-hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 34678999999988 5999999999999999999999999999999864 46799999999999999999999999999
Q ss_pred HHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHH
Q 009082 88 AGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKA 167 (544)
Q Consensus 88 ~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t 167 (544)
.++.||+++|||||||++|+++||++|.+|+.+.+||+.|+.||+.|.+.|.+.|.+.++.+-+ -...-+++|.++++|
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~-~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSS-DKEKFREDLLKIART 160 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888775321 011237899999999
Q ss_pred hhcccc-CCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecC-CCCcccccCceEEEEE
Q 009082 168 AVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFA 245 (544)
Q Consensus 168 ~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~-~~~~~~~~n~kIlll~ 245 (544)
.|+||+ +...+||++++++|+.++... -+++.|+|+|..||++.||++-+|+++++.+ ..+|++++|+||++-|
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs----~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIAN 236 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGS----TNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIAN 236 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCC----CCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEec
Confidence 999995 456789999999999998643 4678999999999999999999999999887 5789999999999999
Q ss_pred eecccccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHH
Q 009082 246 GGVDTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (544)
Q Consensus 246 ~~l~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le 324 (544)
.+++..+-+. .+.+.+++...+.++...|++.++.++++|.++|+|+.|...-|.++..++|...||+++...+.+-+|
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiE 316 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIE 316 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHH
Confidence 9999988876 446889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHH
Q 009082 325 RFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 402 (544)
Q Consensus 325 ~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~ 402 (544)
|++.+||+.+. |++++..++|+|+.+++.-+|+++++.|.+++ .+..|||+|||+|++++||.+|++|||||++...
T Consensus 317 RLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~-~GeActIVlrGat~q~LDEaeRslHDALcVLaqt 395 (527)
T KOG0363|consen 317 RLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVK-LGEACTIVLRGATQQILDEAERSLHDALCVLAQT 395 (527)
T ss_pred HHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccc-cccceEEEEecccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999998 4889999999999999999999999999999999
Q ss_pred hcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEec
Q 009082 403 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDL 482 (544)
Q Consensus 403 ~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~ 482 (544)
.++.+++.||||.||..|..+.+++.+.+|++..++++|++||..+|.+|+.|+|+|+.+++++||+.|.+|...+|+|+
T Consensus 396 v~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~ 475 (527)
T KOG0363|consen 396 VKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDV 475 (527)
T ss_pred hccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCC
Q 009082 483 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAG 529 (544)
Q Consensus 483 ~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~ 529 (544)
.+|+++||.+.||+|++.+|.+.+.+|.|++.+|||+|.||..+|..
T Consensus 476 ~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~ 522 (527)
T KOG0363|consen 476 RNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRE 522 (527)
T ss_pred ccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcc
Confidence 99999999999999999999999999999999999999999998873
No 24
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1e-93 Score=768.49 Aligned_cols=454 Identities=38% Similarity=0.616 Sum_probs=433.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhH
Q 009082 24 LDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLT 103 (544)
Q Consensus 24 ~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~ 103 (544)
.++++..|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||+
T Consensus 6 ~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~ 85 (464)
T cd00309 6 GEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTV 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCchhhHHH
Q 009082 104 ISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCP 182 (544)
Q Consensus 104 vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~ 182 (544)
++|+++|++++.+++++|+||..|++||+.|++.++++|++++++. +..+++.|.++++|+++||+ +.+++++++
T Consensus 86 viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 86 VVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPI----DVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998862 46789999999999999995 567999999
Q ss_pred HHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccccccceEEE
Q 009082 183 LIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (544)
Q Consensus 183 lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~~~ 260 (544)
++++|+.+++++.. .++.+.|+|++++||++.+|++++|++|++++. .|++.++||||++++++|++
T Consensus 162 l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~---------- 230 (464)
T cd00309 162 LVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY---------- 230 (464)
T ss_pred HHHHHHHHhccccC-ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce----------
Confidence 99999999976432 477889999999999999999999999999884 47899999999999999875
Q ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--cCC
Q 009082 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--LCQ 338 (544)
Q Consensus 261 i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii--l~~ 338 (544)
||+++++|++.++++|.++||++++++++++|+|||++|||+++ +++
T Consensus 231 -------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~ 279 (464)
T cd00309 231 -------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLED 279 (464)
T ss_pred -------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 99999999999999999999999999999999999999999999 888
Q ss_pred CCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHH
Q 009082 339 PNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 418 (544)
Q Consensus 339 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~ 418 (544)
++++++|+|+.|++.++|+++|++|++++ .++.+||+|||+|+.+++|+||+++||++++++++++|++|||||++|++
T Consensus 280 ~~~~~lG~~~~v~~~~~g~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 280 LTPEDLGTAGLVEETKIGDEKYTFIEGCK-GGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred CCcccCccccEEEEEEEcCeeEEEEEecC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 99999999999999999999999999987 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccc
Q 009082 419 LARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDL 498 (544)
Q Consensus 419 l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp 498 (544)
||++|++++.+.++++++++++||+||+.||++|++|||+|+.+++.+|++.|.++..++|+|..+|++.||.+.|||||
T Consensus 359 ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp 438 (464)
T cd00309 359 LSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDP 438 (464)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeec
Confidence 99999999888899999999999999999999999999999999999999999877778999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhchhhhhc
Q 009082 499 YVTKFFALKYAADAACTVLRVDQIIM 524 (544)
Q Consensus 499 ~~vk~~~l~~A~e~~~~iL~iD~ii~ 524 (544)
+.+|+++++.|+|+|++|||||++|.
T Consensus 439 ~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 439 LKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 99999999999999999999999974
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-93 Score=755.56 Aligned_cols=498 Identities=32% Similarity=0.482 Sum_probs=465.3
Q ss_pred ccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCc
Q 009082 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (544)
..+ ++++..|+.|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++||.|+|+++++++|++++||||
T Consensus 7 ~~~-~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDGT 85 (524)
T COG0459 7 KFG-EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGT 85 (524)
T ss_pred ccc-HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCch
Confidence 345 5999999999999999999999999999999999779999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||++||+++||+++.+++++|+||+.|++||+.|.+.+.++|++.+.+. ...+.+. +++.|++++|..+.++++
T Consensus 86 TtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v----~~~~~~~--~~~~t~v~sk~~~~~~~i 159 (524)
T COG0459 86 TTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPV----SDSEEEL--KIAITSVASKSANSDEEI 159 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----Ccchhhh--hhhhheeeeeeccChHHH
Confidence 9999999999999999999999999999999999999999999998862 2223333 788899999976656999
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecC---CCCc-ccccCceEEEEEeeccccccccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA---VGSI-KNMEKAKVAVFAGGVDTSATETK 256 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~---~~~~-~~~~n~kIlll~~~l~~~~~~~~ 256 (544)
++++++|+.+++.... |++.|++.+..||+.+++++++|++|++++ ..|| +.++||+|++++++|+..+++.+
T Consensus 160 ~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~ 236 (524)
T COG0459 160 GELVVEAVEKVGKEQS---DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELP 236 (524)
T ss_pred HHHHHHHHHHhccccc---ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCc
Confidence 9999999999986542 778999999999999999999999999954 3578 89999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEeCCccChHHHHHHHHCCeEEEEecCHHHH-HHHHHHhCCe
Q 009082 257 GTVLIHNAEQLENYAKTEE-AKVEGLIKAVAESGAE-VIVSGAAVGEMALHFCERYKLMVLKISSKFEL-RRFCRTTGAV 333 (544)
Q Consensus 257 ~~~~i~~~~~l~~~~~~E~-~~l~~~v~~i~~~~v~-lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~l-e~Ia~~tGa~ 333 (544)
.++.++++.+|..+.+.|+ +.+..+++++++.+++ +++++++|+|.+++||.+.+|++++++.++++ ++|++++||+
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~ 316 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAK 316 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCce
Confidence 9999999999999999999 9999999999999999 99999999999999999999999999999999 8999999999
Q ss_pred Ee--cCCCCCCCCcc--ceeEEEEEECCeEEEEEEecCC-CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeE
Q 009082 334 AM--LCQPNPDDLGY--VDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 408 (544)
Q Consensus 334 ii--l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~v 408 (544)
++ ++++++..+|. |..|++..++++++.+|+++++ .++++||++||+|+.+++|.+|+++|||+++|+++++|++
T Consensus 317 ~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~i 396 (524)
T COG0459 317 IVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKI 396 (524)
T ss_pred EEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99 88899999999 9999999999999999999863 3789999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHhhccccC-hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcc
Q 009082 409 VPGAAATEIELARRLKEFSFKETG-LDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVC 487 (544)
Q Consensus 409 vpGGG~~E~~l~~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i 487 (544)
|||||++|++++.+|++++....+ ++|+++++|++||+.||++|++|||+|+.+++.+|++.|. ..++|+|..+|++
T Consensus 397 V~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~~ 474 (524)
T COG0459 397 VPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEY 474 (524)
T ss_pred EeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCcc
Confidence 999999999999999988544555 9999999999999999999999999999999999999874 3568999999998
Q ss_pred -cccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCC
Q 009082 488 -ADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGG 530 (544)
Q Consensus 488 -~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~ 530 (544)
.||.+.|||||+.+|+++|+.|+|+|.+||++|++|..+|...
T Consensus 475 ~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 475 EDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred ccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 7799999999999999999999999999999999999998753
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.8e-91 Score=756.43 Aligned_cols=478 Identities=34% Similarity=0.582 Sum_probs=451.1
Q ss_pred HHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHH
Q 009082 38 LSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEEL 117 (544)
Q Consensus 38 l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~l 117 (544)
|++++++||||+|++|||++..|+++|||||+||+++|+++||+++++++++++|++++||||||+|+|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCchhhHHHHHHHHHHHhCCCCC
Q 009082 118 IRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPLIADACIQVCPKNP 196 (544)
Q Consensus 118 i~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~ 196 (544)
+++|+||..|++||+.|++.+++.|++++++. +..+ +.+.++++|++++|+ ..+.++|++++++|+..+..+
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~----~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~-- 153 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPI----NNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN-- 153 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEES----TSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT--
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccc----cccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc--
Confidence 99999999999999999999999999998862 2222 899999999999995 467899999999999444322
Q ss_pred CcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHH
Q 009082 197 ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTE 274 (544)
Q Consensus 197 ~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E 274 (544)
+++++++++++.||+++||++++|++|++++. .||++++||||++++++|++.++ .+.++.+++++++..+.++|
T Consensus 154 --~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e 230 (485)
T PF00118_consen 154 --FDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQE 230 (485)
T ss_dssp --HHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHH
T ss_pred --ccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhh
Confidence 78888999999999999999999999998874 47999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEE
Q 009082 275 EAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSV 352 (544)
Q Consensus 275 ~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~ 352 (544)
+++++++++++.+.|+++|+++++|++.++++|.++||++++++++++|++|+++|||+++ +++++++.+|+|+.+++
T Consensus 231 ~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~ 310 (485)
T PF00118_consen 231 KKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEE 310 (485)
T ss_dssp HHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEE
T ss_pred hhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 77888888999999999
Q ss_pred EEECCeEEEEEE--ecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccc
Q 009082 353 EEIGGARVTIVR--NEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKE 430 (544)
Q Consensus 353 ~~ig~~~~~~~~--~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~ 430 (544)
..+++++|++|+ ++. .++.+||+|||+++.+++|++++++||+++++++++++++|||||++|++|+++|++++...
T Consensus 311 ~~i~~~~~~~~~~~~~~-~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~ 389 (485)
T PF00118_consen 311 REIGNKKYIFIEGIGCL-SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSL 389 (485)
T ss_dssp EEETSSEEEEEEEHSES-SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccccccccc-ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcc
Confidence 999999999999 465 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHH
Q 009082 431 TGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAA 510 (544)
Q Consensus 431 ~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~ 510 (544)
++++++++++||+||+.||++|++|||+|+.+++++|+..|+++ .++|+|+.+|++.||.+.|||||+.+|+++|+.|+
T Consensus 390 ~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~-~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~ 468 (485)
T PF00118_consen 390 SGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG-NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAV 468 (485)
T ss_dssp SSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred cCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc-cccCcCccCCceeccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764 49999999999999999999999999999999999
Q ss_pred HHHHHHhchhhhhccCC
Q 009082 511 DAACTVLRVDQIIMAKP 527 (544)
Q Consensus 511 e~~~~iL~iD~ii~~~~ 527 (544)
|+|++|||||++|.++|
T Consensus 469 ~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 469 EIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999876
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-88 Score=734.37 Aligned_cols=462 Identities=23% Similarity=0.333 Sum_probs=417.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
++++..|+.+|..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| .|++++++|++|++++||||
T Consensus 9 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGT 88 (542)
T PRK12849 9 EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|++++.| ..+.+.|.++++|+.+ +++++
T Consensus 89 TtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~------~~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK12849 89 TTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARP------VSGSEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcC-----ChHHH
Confidence 999999999999999999999999999999999999999999999875 2467889999887754 57899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCC-ceeEeeEEEeecCC---------CCcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~d-S~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+..+++++. |+++ .|++.+| +++++|++|++++. .|++.++||+|+++++.
T Consensus 158 ~~lv~~Av~~v~~~g~--i~i~-------~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~--- 225 (542)
T PRK12849 158 GELIAEAMEKVGKDGV--ITVE-------ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKK--- 225 (542)
T ss_pred HHHHHHHHHHhccCCc--EeEE-------eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCC---
Confidence 9999999999976543 5543 6888875 89999999998863 35888999999999995
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHC------CeEEEEecC-----
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS----- 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~------~I~vv~~v~----- 319 (544)
+++++++. ++++++.+.|++|||++++|++.++++|.++ +|+++++++
T Consensus 226 ----------i~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r 284 (542)
T PRK12849 226 ----------ISSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 284 (542)
T ss_pred ----------cCCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchh
Confidence 34555544 6889999999999999999999999999987 999999998
Q ss_pred HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009082 320 KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 369 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 369 (544)
+++|+|||.+|||+++ +++++++++|+|+.|++.+ +++++++++.+.
T Consensus 285 ~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~ 361 (542)
T PRK12849 285 KAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDR 361 (542)
T ss_pred HhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4569999999999998 3556777899999999754 888888887531
Q ss_pred -----------cceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 370 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 370 -----------~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++ +.++++++++
T Consensus 362 ~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i 439 (542)
T PRK12849 362 EKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGV 439 (542)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHH
Confidence 3589999999999999999999999999999999998 99999999999999999998 8899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++||+||+.||++|++|||+|+.+++++|+..| .++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++||+
T Consensus 440 ~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~ 515 (542)
T PRK12849 440 EIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLT 515 (542)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998874 4799999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCCCCCCCC
Q 009082 519 VDQIIMAKPAGGPRRDQQPGGGM 541 (544)
Q Consensus 519 iD~ii~~~~~~~~~~~~~~~~~~ 541 (544)
||++|..+|.. ..+|.+ +|+|
T Consensus 516 id~iI~~~~~~-~~~~~~-~~~~ 536 (542)
T PRK12849 516 TEALVADKPEE-EDPPGG-MGGM 536 (542)
T ss_pred HHHHHhcCCcc-CCCCCC-CCCC
Confidence 99999998853 444665 3443
No 28
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-88 Score=733.60 Aligned_cols=466 Identities=22% Similarity=0.323 Sum_probs=422.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
++++..|++++..++++++|||||+|++|||+++.|+++|||||+|||++|+++|| .|+|++++|++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 89 (541)
T PRK12851 10 VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGT 89 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ +.+.+.+.++++++. ++++.|
T Consensus 90 TtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~------~~~~~~l~~va~~s~-----~~~~~l 158 (541)
T PRK12851 90 TTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARP------VTTNAEIAQVATISA-----NGDAEI 158 (541)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhc-----cChHHH
Confidence 999999999999999999999999999999999999999999999875 236778899987654 358899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC---------CCcccccCceEEEEEeecccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (544)
++++++|+..+++++. +++ .+.. +...++++++|++|++++. .|+++++||+|+++++++
T Consensus 159 ~~lv~~Av~~vg~~g~--i~i-----~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i--- 227 (541)
T PRK12851 159 GRLVAEAMEKVGNEGV--ITV-----EESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKI--- 227 (541)
T ss_pred HHHHHHHHHHhcccCc--eEE-----EEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCc---
Confidence 9999999999976542 333 2323 5667899999999998773 378999999999999984
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCe------EEEEe-----cCH
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I------~vv~~-----v~~ 320 (544)
++.+ .+.++++++.+.|++|||++++|++.++++|..++| ++|++ +++
T Consensus 228 ----------~~~~-----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~ 286 (541)
T PRK12851 228 ----------SNLQ-----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 286 (541)
T ss_pred ----------CcHH-----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccH
Confidence 2222 366889999999999999999999999999999886 99997 788
Q ss_pred HHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCCC------------------------
Q 009082 321 FELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG------------------------ 369 (544)
Q Consensus 321 ~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 369 (544)
++|+|||.+|||+++ +++++++++|+|+.|++.+ ++++++.++...
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (541)
T PRK12851 287 AMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDRE 363 (541)
T ss_pred hHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999 2455667799999999877 788888887531
Q ss_pred ----------cceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHH
Q 009082 370 ----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 439 (544)
Q Consensus 370 ----------~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~ 439 (544)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++.. +++++++++
T Consensus 364 ~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~ 441 (541)
T PRK12851 364 KLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVE 441 (541)
T ss_pred HHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHH
Confidence 1388999999999999999999999999999999998 9999999999999999998876 889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhch
Q 009082 440 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 519 (544)
Q Consensus 440 ~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~i 519 (544)
+|++||+.||++|++|||+|+.+++++|++.| .++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++||+|
T Consensus 442 ~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 442 IVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999998875 47999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCC
Q 009082 520 DQIIMAKPAGGPRRDQQPGGGMD 542 (544)
Q Consensus 520 D~ii~~~~~~~~~~~~~~~~~~~ 542 (544)
|++|..+|...+++|+.|+|+||
T Consensus 518 d~iI~~~~~~~~~~~~~~~~~~~ 540 (541)
T PRK12851 518 EAMVAEKPKKEPAPPAPPGGGMD 540 (541)
T ss_pred HHhhhcCCCCCCCCCCCCCcccC
Confidence 99999999999999999999998
No 29
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.6e-88 Score=731.20 Aligned_cols=465 Identities=23% Similarity=0.333 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
++++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++|| .++|+++++++|++++||||
T Consensus 9 ~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGT 88 (542)
T PRK00013 9 EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCcc
Confidence 58999999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++.| +.+.+.|.++++|+.+ +++.+
T Consensus 89 TtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~------~~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK00013 89 TTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKP------VEDKEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHhccc-----chHHH
Confidence 999999999999999999999999999999999999999999999885 2367889999877653 48899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC---------CCcccccCceEEEEEeecccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (544)
++++++|+..+++++ .|+|.+..| ...++++++|++|++++. .|++.++||+|+++++.
T Consensus 158 s~lv~~Av~~v~~~g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~---- 225 (542)
T PRK00013 158 GKLIAEAMEKVGKEG-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKK---- 225 (542)
T ss_pred HHHHHHHHHHhCcCC-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCc----
Confidence 999999999997543 145555555 778999999999998863 34788999999999995
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCC------eEEEEecC-----H
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKISS-----K 320 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~------I~vv~~v~-----~ 320 (544)
+++++++. ++++++.+.|++|||++++|++.++++|..++ |+++++++ +
T Consensus 226 ---------i~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~ 285 (542)
T PRK00013 226 ---------ISNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRK 285 (542)
T ss_pred ---------cCCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchh
Confidence 45555544 78999999999999999999999999999886 99999997 8
Q ss_pred HHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcc----------------------
Q 009082 321 FELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNS---------------------- 371 (544)
Q Consensus 321 ~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~---------------------- 371 (544)
++|+|||.+|||+++ ++++++++||+|+.|++.. +++++|+++.+ ++
T Consensus 286 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~-~~~i~~ri~~l~~~~~~~~~~~~~ 361 (542)
T PRK00013 286 AMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGD-KEAIKARVAQIKAQIEETTSDYDR 361 (542)
T ss_pred hhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCC-HHHHHHHHHHHHHHHhhcCCHHHH
Confidence 899999999999999 3456777899999999764 78899988753 33
Q ss_pred -------------eEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 372 -------------VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 372 -------------~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|+++ .+.++++++++
T Consensus 362 ~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i 439 (542)
T PRK00013 362 EKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGI 439 (542)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHH
Confidence 78999999999999999999999999999999998 9999999999999999988 67889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++||+||+.||++|++|||+|+.+++.+|+..| +.++|+|+.+|+++||++.|||||+.+|.++|+.|+++|++||+
T Consensus 440 ~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 516 (542)
T PRK00013 440 NIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLT 516 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 46899999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCCCCCCCC
Q 009082 519 VDQIIMAKPAGGPRRDQQPGGGM 541 (544)
Q Consensus 519 iD~ii~~~~~~~~~~~~~~~~~~ 541 (544)
||++|..+|..-...|+-.+|+|
T Consensus 517 id~iI~~~~~~~~~~~~~~~~~~ 539 (542)
T PRK00013 517 TEAVVADKPEKKAAAPPMGGGGM 539 (542)
T ss_pred HHHHHhcCCcccCCCCCCCCCCC
Confidence 99999999986555555545665
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-87 Score=726.33 Aligned_cols=466 Identities=20% Similarity=0.326 Sum_probs=421.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (544)
++++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+ ++|++++|++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGT 89 (544)
T PRK12850 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGT 89 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCc
Confidence 589999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ +.+.+.|.+++++++++ ++.+
T Consensus 90 Tt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~------v~~~~~l~~va~~s~~~-----~~~l 158 (544)
T PRK12850 90 TTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKK------VTSSKEIAQVATISANG-----DESI 158 (544)
T ss_pred chHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcCC-----HHHH
Confidence 999999999999999999999999999999999999999999999875 23678899998877554 7899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCC---------CcccccCceEEEEEeecccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG---------SIKNMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~---------~~~~~~n~kIlll~~~l~~~ 251 (544)
++++++|+..+++++. ++++.++ ..| .++++++|++|++++.+ |++.++||+|+++++.+
T Consensus 159 ~~lv~eAv~~vg~~g~--i~v~~~~---~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i--- 227 (544)
T PRK12850 159 GEMIAEAMDKVGKEGV--ITVEEAK---TLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI--- 227 (544)
T ss_pred HHHHHHHHHHhcccCc--eeeEEcc---ccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc---
Confidence 9999999999976543 6665432 233 68999999999988742 47889999999999963
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCe------EEEEe-----cCH
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I------~vv~~-----v~~ 320 (544)
++.+ .+.++++++.+.|++|||++++|++.++++|..++| ++|++ .++
T Consensus 228 ----------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~ 286 (544)
T PRK12850 228 ----------SNLQ-----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRK 286 (544)
T ss_pred ----------CCHH-----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccH
Confidence 3322 366889999999999999999999999999999998 99998 678
Q ss_pred HHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCC-------------------------
Q 009082 321 FELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------- 368 (544)
Q Consensus 321 ~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 368 (544)
++|+|||++|||+++ ++++++++||+|+.|++.+ +++++|+++..
T Consensus 287 ~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (544)
T PRK12850 287 AMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDRE 363 (544)
T ss_pred HHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999998 3556667899999999776 78889988753
Q ss_pred ---------CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHH
Q 009082 369 ---------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 439 (544)
Q Consensus 369 ---------~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~ 439 (544)
+++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...+++++++++
T Consensus 364 ~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~ 441 (544)
T PRK12850 364 KLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGID 441 (544)
T ss_pred HHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHH
Confidence 13489999999999999999999999999999999997 9999999999999999988 677889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhch
Q 009082 440 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 519 (544)
Q Consensus 440 ~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~i 519 (544)
+|++||+.||++|++|||+|+.+++++|++.| .++|+|+.+|+++||++.|||||+.+|.++|+.|+++|++||+|
T Consensus 442 ~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 442 IVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999998864 47899999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCC
Q 009082 520 DQIIMAKPAGGPRRDQQPGGGMD 542 (544)
Q Consensus 520 D~ii~~~~~~~~~~~~~~~~~~~ 542 (544)
|++|..+|...+++-.-|+|+|.
T Consensus 518 d~iI~~~~~~~~~~~~~~~~~~~ 540 (544)
T PRK12850 518 EAMVAEAPKKAAAAAAGPGPGMG 540 (544)
T ss_pred HHhhccCCCCCCCCCCCCCCCCC
Confidence 99999999877777777777763
No 31
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-89 Score=680.37 Aligned_cols=504 Identities=29% Similarity=0.476 Sum_probs=470.1
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCch
Q 009082 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (544)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (544)
+| +.++..|..|+..+++++++||||-|++||++++.|++++||||+|||+.|.++||++|+|++.++.|++++|||||
T Consensus 16 sg-~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgtt 94 (545)
T KOG0360|consen 16 SG-ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGTT 94 (545)
T ss_pred cc-hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCce
Confidence 56 47778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCchhhH
Q 009082 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEIL 180 (544)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~l 180 (544)
++++++++||+++.+|+..++||..|++||+.|...+++++.+--.. ++|...++.|.++++|+++||. ....++|
T Consensus 95 svviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~---~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f 171 (545)
T KOG0360|consen 95 SVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSK---PVDSLGTQILINLAKTSMSSKIIGMDSDFF 171 (545)
T ss_pred EEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhcccee---ehhhcchHHHHHHHHhhhcceecccchHHH
Confidence 99999999999999999999999999999999999999999764332 2366789999999999999995 5668999
Q ss_pred HHHHHHHHHHhCC---CCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecccccccc
Q 009082 181 CPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATET 255 (544)
Q Consensus 181 s~lv~~a~~~~~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~ 255 (544)
++++++|+..+.- ++...+.++.++|.|..|.+..+|.+++|+.++.... .||.++.|+||++|++.|...+.+.
T Consensus 172 ~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~l 251 (545)
T KOG0360|consen 172 TEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKL 251 (545)
T ss_pred HHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccccccccc
Confidence 9999999998742 2334578889999999999999999999999998874 5899999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe
Q 009082 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (544)
Q Consensus 256 ~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii 335 (544)
...+.+.+|+.++++++.|....++.+++|...|+|||+++++|||+.+.||.+.|+++|||+++++|++|+++||++++
T Consensus 252 Gv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~ 331 (545)
T KOG0360|consen 252 GVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLL 331 (545)
T ss_pred cceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cC------CCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCe
Q 009082 336 --LC------QPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 407 (544)
Q Consensus 336 --l~------~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~ 407 (544)
+. .+.+..+|+|+.|.+.+|+++.++++.+.+. ..++|+|||+++..+||++|++|||+|++|..+++++
T Consensus 332 sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~ 409 (545)
T KOG0360|consen 332 SSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKS 409 (545)
T ss_pred ehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCc
Confidence 54 4566789999999999999999999998863 4999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--C------CCeee
Q 009082 408 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS--G------KTKVG 479 (544)
Q Consensus 408 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~--~------~~~~g 479 (544)
+||||||+|.+|+-+|++|+.+..+++++++..||.||.+||++|+.|++.|+.++++++++.|+. . ..|+|
T Consensus 410 vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~G 489 (545)
T KOG0360|consen 410 VVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYG 489 (545)
T ss_pred cccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhC
Confidence 999999999999999999999999999999999999999999999999999999999999998853 1 24899
Q ss_pred EecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCC
Q 009082 480 IDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGP 531 (544)
Q Consensus 480 id~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~ 531 (544)
+|+.+|++.|.++.|+++|..+|...|+.|+|.+.++||||++|.-.|+.+.
T Consensus 490 ldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 490 LDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred ccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 9999999999999999999999999999999999999999999988776443
No 32
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-86 Score=719.30 Aligned_cols=462 Identities=19% Similarity=0.287 Sum_probs=416.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccc----cChHHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEV----QHPAAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~----~hP~a~ll~~~~~~~~~~~GDGt 100 (544)
+++++.|++++..++++++|||||+||+|||+++.|+++|||||+|||++|++ +||.++|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGT 89 (545)
T PRK12852 10 GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGT 89 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCc
Confidence 58999999999999999999999999999999999999999999999999999 49999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++||++||+++.+|+++|+||..|++||+.|.+.++++|+++++| + .+.+.+.++++++.++ ++.+
T Consensus 90 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~-v-----~~~~~l~~va~~s~~~-----~~~l 158 (545)
T PRK12852 90 TTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKP-V-----ASSAEIAQVGTISANG-----DAAI 158 (545)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccc-C-----CCHHHHHHHHhhhcCC-----hHHH
Confidence 999999999999999999999999999999999999999999999885 2 3456689998776554 7889
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCC-CCceeEeeEEEeecCC---------CCcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~-~dS~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+.++++++. |++++ |+.. .++++++|+.|++++. .|+..++||+|+++++.
T Consensus 159 ~~li~eA~~~vg~~g~--i~v~~-------g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~--- 226 (545)
T PRK12852 159 GKMIAQAMQKVGNEGV--ITVEE-------NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKK--- 226 (545)
T ss_pred HHHHHHHHHHhccCCc--eeeec-------CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCc---
Confidence 9999999999987653 66653 7775 7999999999998873 36788999999999875
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHC------CeEEEEecC-----
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS----- 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~------~I~vv~~v~----- 319 (544)
+++++ .+.++++.+.+.+++|||++++|++.++++|..+ +|++|++++
T Consensus 227 ----------i~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r 285 (545)
T PRK12852 227 ----------LSGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (545)
T ss_pred ----------cCCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccch
Confidence 33433 5558899999999999999999999999999865 899999888
Q ss_pred HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009082 320 KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 369 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 369 (544)
+++|+|||.+|||+++ +++++++++|+|+.|++.+ ++++++.++...
T Consensus 286 ~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (545)
T PRK12852 286 KAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDR 362 (545)
T ss_pred HhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 8999999999999998 3566777899999999877 678888876421
Q ss_pred -----------cceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 370 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 370 -----------~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.. ++.+|+++
T Consensus 363 ~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i 440 (545)
T PRK12852 363 EKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGI 440 (545)
T ss_pred HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHH
Confidence 3789999999999999999999999999999999998 9999999999999999998876 78899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++||+||+.||++|++|||+|+.+++++|++.| ++++|+|+.+|+++||.+.|||||+.+|.++|+.|+|+|++||+
T Consensus 441 ~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~ 517 (545)
T PRK12852 441 NIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVT 517 (545)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876 46899999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCCCCC
Q 009082 519 VDQIIMAKPAGGPRRDQQPG 538 (544)
Q Consensus 519 iD~ii~~~~~~~~~~~~~~~ 538 (544)
||++|..+|.....+|..|.
T Consensus 518 id~iI~~~~~~~~~~~~~~~ 537 (545)
T PRK12852 518 TEAMVAELPKKDAAPAMPAG 537 (545)
T ss_pred HHHHhhcCCCCCCCCCCCCC
Confidence 99999998875444444444
No 33
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.1e-86 Score=718.58 Aligned_cols=454 Identities=20% Similarity=0.301 Sum_probs=412.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
++++..|+.+|..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++||||
T Consensus 21 ~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~evGDGT 100 (555)
T PTZ00114 21 DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGT 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccccCCcc
Confidence 58999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+|+||++||+++.+++++|+||..|++||+.|.+.++++|++++.+ +.+.+.|.++++|+.++ ++++
T Consensus 101 TtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~------v~~~~~l~~va~ts~~~-----~~~l 169 (555)
T PTZ00114 101 TTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRP------VKTKEDILNVATISANG-----DVEI 169 (555)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHHcCC-----hHHH
Confidence 999999999999999999999999999999999999999999999875 23678899999887654 7789
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCc-eeEeeEEEeecCC---------CCcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+.++++++. |.+..|+++.+| ++++|++|++++. .|++.++||+|++++++|+
T Consensus 170 ~~li~eAv~~vg~~g~---------I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~- 239 (555)
T PTZ00114 170 GSLIADAMDKVGKDGT---------ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS- 239 (555)
T ss_pred HHHHHHHHHHhCcCCc---------EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-
Confidence 9999999999975431 445689999998 8999999998863 2588899999999999975
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCC------eEEEEec-----C
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKIS-----S 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~------I~vv~~v-----~ 319 (544)
++++ +.++++++.+.|++|+|++++|++.++++|..++ |++++++ +
T Consensus 240 ------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~ 296 (555)
T PTZ00114 240 ------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNR 296 (555)
T ss_pred ------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcch
Confidence 3333 5578899999999999999999999999998875 9999884 5
Q ss_pred HHHHHHHHHHhCCeEe--c------CCCCCCCCccceeEEEEEECCeEEEEEEecCC-----------------------
Q 009082 320 KFELRRFCRTTGAVAM--L------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG----------------------- 368 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii--l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~----------------------- 368 (544)
+++|+|||.+|||+++ . ++++++++|+|+.|++.+ ++++++.++..
T Consensus 297 ~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~ 373 (555)
T PTZ00114 297 KDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYD 373 (555)
T ss_pred HHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHH
Confidence 7999999999999999 4 667777899999999888 45556655430
Q ss_pred -----------CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhc--cccChHH
Q 009082 369 -----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF--KETGLDQ 435 (544)
Q Consensus 369 -----------~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~--~~~~~~~ 435 (544)
+++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++. ..+++++
T Consensus 374 ~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~ 452 (555)
T PTZ00114 374 KEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQR 452 (555)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHH
Confidence 36899999999999999999999999999999999988 999999999999999998875 5788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHH
Q 009082 436 YAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACT 515 (544)
Q Consensus 436 ~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~ 515 (544)
+++++|++||+.||++|++|||+|+.+++++|++ ++++++|+|+.+|+++||++.|||||+.+|.++|+.|+++|++
T Consensus 453 ~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~ 529 (555)
T PTZ00114 453 TGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASL 529 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976 3467899999999999999999999999999999999999999
Q ss_pred HhchhhhhccCCCC
Q 009082 516 VLRVDQIIMAKPAG 529 (544)
Q Consensus 516 iL~iD~ii~~~~~~ 529 (544)
||+||++|..+|..
T Consensus 530 iL~id~iI~~~~~~ 543 (555)
T PTZ00114 530 MLTTEAAIVDLPKE 543 (555)
T ss_pred HHhHHHHHHhCCcc
Confidence 99999999997753
No 34
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.6e-86 Score=713.89 Aligned_cols=447 Identities=22% Similarity=0.333 Sum_probs=409.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
.+++..|+++|..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++||||
T Consensus 7 ~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGT 86 (520)
T cd03344 7 EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGT 86 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++.| +.+.+.|.++++|++++ ++++
T Consensus 87 TtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~------i~~~~~l~~va~ts~~~-----~~~l 155 (520)
T cd03344 87 TTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKP------VKTKEEIAQVATISANG-----DEEI 155 (520)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcCC-----hHHH
Confidence 999999999999999999999999999999999999999999999885 23788999999988775 7899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCC-ceeEeeEEEeecCC--C-------CcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV--G-------SIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~d-S~li~Givl~~~~~--~-------~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+..+++++. |.+ .+|++..| +++++|++|++++. . |++.++||+|+++++++
T Consensus 156 ~~lv~~A~~~v~~~~~--i~v-------~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l-- 224 (520)
T cd03344 156 GELIAEAMEKVGKDGV--ITV-------EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI-- 224 (520)
T ss_pred HHHHHHHHHHhccCCc--EEE-------EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC--
Confidence 9999999999876542 432 37899988 79999999998863 1 34678999999999984
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCe------EEEEec-----C
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKIS-----S 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I------~vv~~v-----~ 319 (544)
++++++ .++++++.+.|++|||++++|++.++++|.++++ ++++++ +
T Consensus 225 -----------~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~ 282 (520)
T cd03344 225 -----------SSIQEL-----------LPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRR 282 (520)
T ss_pred -----------CCHHHH-----------HHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCccc
Confidence 455554 3678999999999999999999999999999988 999988 7
Q ss_pred HHHHHHHHHHhCCeEec-------CCCCCCCCccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009082 320 KFELRRFCRTTGAVAML-------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 369 (544)
Q Consensus 320 ~~~le~Ia~~tGa~iil-------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 369 (544)
+++++|||++|||+++- ++++++++|+|+.|++.+ ++++++.++...
T Consensus 283 ~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 359 (520)
T cd03344 283 KAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDK 359 (520)
T ss_pred HHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 89999999999999992 456667899999999876 778888877531
Q ss_pred -----------cceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 370 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 370 -----------~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++. .++++++++
T Consensus 360 ~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~ 437 (520)
T cd03344 360 EKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGI 437 (520)
T ss_pred HHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHH
Confidence 2699999999999999999999999999999999998 999999999999999999987 899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++|++||+.||++|++|||+|+.+++++|+..|. ++|+|+.+|+++||++.|||||+.+|.++|+.|+++|++||+
T Consensus 438 ~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~ 513 (520)
T cd03344 438 EIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLT 513 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763 899999999999999999999999999999999999999999
Q ss_pred hhhhhc
Q 009082 519 VDQIIM 524 (544)
Q Consensus 519 iD~ii~ 524 (544)
||.+|.
T Consensus 514 id~~i~ 519 (520)
T cd03344 514 TEALVV 519 (520)
T ss_pred hheEEe
Confidence 999885
No 35
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.6e-85 Score=709.27 Aligned_cols=450 Identities=22% Similarity=0.329 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
++++..|+.|+..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| .++++++++++|++++||||
T Consensus 8 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 87 (524)
T TIGR02348 8 EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGT 87 (524)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCc
Confidence 59999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++.+ ..+.+.|.++++|+.+ +++++
T Consensus 88 TtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~------~~~~~~l~~va~ts~~-----~~~~l 156 (524)
T TIGR02348 88 TTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKP------VKGKKEIAQVATISAN-----NDEEI 156 (524)
T ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcc-----ChHHH
Confidence 999999999999999999999999999999999999999999999885 2367889999887654 47899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCC-CCceeEeeEEEeecCC---------CCcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~-~dS~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+..+++++. |++. .|+.. ++|++++|++|++++. .+++.++||+|+++++.
T Consensus 157 ~~lv~~A~~~v~~~~~--i~v~-------~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~--- 224 (524)
T TIGR02348 157 GSLIAEAMEKVGKDGV--ITVE-------ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKK--- 224 (524)
T ss_pred HHHHHHHHHHhCcCCc--Eeee-------cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCC---
Confidence 9999999999976543 5533 25666 6799999999998873 24788999999999996
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHC------CeEEEEecCH----
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISSK---- 320 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~------~I~vv~~v~~---- 320 (544)
+++++++ .++++++.+.|++|||++++|++.++++|..+ +|+++++++.
T Consensus 225 ----------i~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r 283 (524)
T TIGR02348 225 ----------ISNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRR 283 (524)
T ss_pred ----------cCCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchh
Confidence 3455443 58899999999999999999999999999875 8999999965
Q ss_pred -HHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCC------------------------
Q 009082 321 -FELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 368 (544)
Q Consensus 321 -~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 368 (544)
++++|||.+|||+++ ++++++++||+|+.|++.+ +++++++++..
T Consensus 284 ~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~ 360 (524)
T TIGR02348 284 KAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDR 360 (524)
T ss_pred hhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 799999999999999 3456777899999999765 77888887642
Q ss_pred ----------CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 369 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 369 ----------~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
+++.+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|+++|.+|++ +.+.++++++++
T Consensus 361 ~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~ 438 (524)
T TIGR02348 361 EKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGI 438 (524)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHH
Confidence 12378999999999999999999999999999999998 999999999999999998 677889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++|++||+.||++|++|||+|+.+++++|+.. ++ ++|+|+.+|+++||++.|||||+.+|.++|+.|+++|++||+
T Consensus 439 ~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 514 (524)
T TIGR02348 439 DIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLT 514 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875 32 489999999999999999999999999999999999999999
Q ss_pred hhhhhccCC
Q 009082 519 VDQIIMAKP 527 (544)
Q Consensus 519 iD~ii~~~~ 527 (544)
||++|...|
T Consensus 515 id~ii~~~~ 523 (524)
T TIGR02348 515 TEAVVADKP 523 (524)
T ss_pred HHHHhhcCC
Confidence 999997654
No 36
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=3.8e-84 Score=699.30 Aligned_cols=459 Identities=19% Similarity=0.293 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhcccc----ChHHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQ----HPAAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~----hP~a~ll~~~~~~~~~~~GDGt 100 (544)
+++++.|++|+..++++++|||||+|++|||+++.|+++|||||+||+++|+++ ||.++|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGT 89 (546)
T PRK14104 10 VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGT 89 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcc
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++||++||+++.+++++|+||..|++||+.|.+.+++.|++++++ + .+.+.+.++++++.++ ++.+
T Consensus 90 TTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~-v-----~~~~~l~~va~~s~~~-----d~~i 158 (546)
T PRK14104 90 TTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKK-V-----TSNDEIAQVGTISANG-----DAEI 158 (546)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhccc-C-----CCHHHHHHHHHHHhcC-----chHH
Confidence 999999999999999999999999999999999999999999999886 2 2456788888776554 5789
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCC-CCceeEeeEEEeecCCC---------CcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAVG---------SIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~-~dS~li~Givl~~~~~~---------~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+.++++++. |+++.+ +.. .++++++|++|++++.+ ++..+++|+|++++..
T Consensus 159 ~~lv~~Av~~vg~~g~--i~v~~~-------~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~--- 226 (546)
T PRK14104 159 GKFLADAMKKVGNEGV--ITVEEA-------KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK--- 226 (546)
T ss_pred HHHHHHHHHHhccCCc--eeeEec-------ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh---
Confidence 9999999999987653 776642 345 58999999999988742 3566889999999843
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHH------CCeEEEEecC-----
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLKISS----- 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~------~~I~vv~~v~----- 319 (544)
++++++ +.++++++.+.|++|||++++|++.++++|.. .+|++|++++
T Consensus 227 ----------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r 285 (546)
T PRK14104 227 ----------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (546)
T ss_pred ----------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcch
Confidence 444433 55889999999999999999999999999984 6899999998
Q ss_pred HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009082 320 KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 369 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 369 (544)
+++|+|||.+|||+++ ++++++++||+|+.+++ ++++++++.+|...
T Consensus 286 ~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (546)
T PRK14104 286 KAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDR 362 (546)
T ss_pred HHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 7899999999999999 45677778999999884 67888999888631
Q ss_pred -----------cceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 370 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 370 -----------~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++++++++
T Consensus 363 ~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i 440 (546)
T PRK14104 363 EKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGV 440 (546)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHH
Confidence 3899999999999999999999999999999999998 99999999999999999874 4578999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++|++||+.||++|++|||+|+.+++.+|+..| +.++|+|+.+|+++||.+.|||||+.+|.++|+.|+++|++||+
T Consensus 441 ~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~ 517 (546)
T PRK14104 441 EIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLIT 517 (546)
T ss_pred HHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753 56799999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCC
Q 009082 519 VDQIIMAKPAGGPRRDQ 535 (544)
Q Consensus 519 iD~ii~~~~~~~~~~~~ 535 (544)
||++|..+|......|.
T Consensus 518 id~~I~~~~~~~~~~~~ 534 (546)
T PRK14104 518 TEAMVAELPKKGGAGPA 534 (546)
T ss_pred HHHHHhcCCcCCCCCCC
Confidence 99999998875444443
No 37
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-86 Score=654.68 Aligned_cols=512 Identities=27% Similarity=0.496 Sum_probs=485.0
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHH
Q 009082 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (544)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~ 91 (544)
..+..++...+|. .+...|++|+++++++++||+||+.|.||+.+..|.+..||||..||+++++.||.|+-+.+.+.+
T Consensus 6 ~~~~~~~~re~g~-kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rt 84 (527)
T KOG0364|consen 6 LVLSKNTKRESGR-KVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRT 84 (527)
T ss_pred eecccccCcCccc-cccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhc
Confidence 3356667777784 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcc
Q 009082 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (544)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~s 171 (544)
||+++|||||||++|++++|.++..++++++||..|+++|..|++.++..+++.+.+ +|.+|...+..++++++.+
T Consensus 85 qdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~----~d~~~~~km~~vi~~~v~t 160 (527)
T KOG0364|consen 85 QDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIP----VDVKDQAKMLRVINSSVGT 160 (527)
T ss_pred ccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhccc----CCcccHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999988886 4888999999999999999
Q ss_pred ccC-CchhhHHHHHHHHHHHhCCCCCCcccch-hhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEee
Q 009082 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (544)
Q Consensus 172 k~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~-~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~ 247 (544)
|+. .+++.++++..+|+..++.++...||+. +.++.|++||.+.+|++++|+.+.++.. .|...++||||++|+||
T Consensus 161 k~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~ 240 (527)
T KOG0364|consen 161 KFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCP 240 (527)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCC
Confidence 964 5788999999999999987643358875 7899999999999999999999998875 37889999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 248 l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
|+|.+.++.+.+++...+++....+-|++++..+++.|+...++||++++++++.+++||.+.||.+++++.+.|-.||+
T Consensus 241 LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria 320 (527)
T KOG0364|consen 241 LEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIA 320 (527)
T ss_pred ccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhh
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEe--cCCCCCCCCcc-ceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhc
Q 009082 328 RTTGAVAM--LCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 404 (544)
Q Consensus 328 ~~tGa~ii--l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~ 404 (544)
+++||+++ .+++.+.+.|+ |+.+++..+|+++|.+|..|+ .++.|||++|||++.+++|.+|.++||+.+.|+.+.
T Consensus 321 ~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck-~pkaCtillrg~skdil~e~ernlqda~~varn~ii 399 (527)
T KOG0364|consen 321 RACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCK-EPKACTILLRGPSKDILNEVERNLQDAMGVARNVII 399 (527)
T ss_pred hhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcC-CCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhcc
Confidence 99999999 88899999994 889999999999999999998 499999999999999999999999999999999999
Q ss_pred CCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCC
Q 009082 405 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLEN 484 (544)
Q Consensus 405 ~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~ 484 (544)
+|+++||||++||.+|+.|++.+...++.++..+.+.|.|||.+||+|++|+|.+++..++.+++.|..|...+|+|..+
T Consensus 400 ~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~t 479 (527)
T KOG0364|consen 400 NPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGET 479 (527)
T ss_pred CCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCce
Confidence 99999999999999999999988889999999999999999999999999999999999999999999888889999999
Q ss_pred CcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCC
Q 009082 485 GVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAG 529 (544)
Q Consensus 485 ~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~ 529 (544)
|.++||.+.++|+|+.+|.+..++|+|.++++||||+++......
T Consensus 480 g~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 480 GVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred eeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 999999999999999999999999999999999999999876553
No 38
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2e-84 Score=701.35 Aligned_cols=454 Identities=20% Similarity=0.270 Sum_probs=403.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHH----HHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAA----KLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a----~ll~~~~~~~~~~~GDGt 100 (544)
++++++.+++|..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||++ +|+++++++|++++||||
T Consensus 9 ~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGT 88 (529)
T CHL00093 9 DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGT 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCC
Confidence 5899999999999999999999999999999999999999999999999999999998 588889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+++|+++||+++.+|+++|+||..|++||+.|.+.+++.|++++.+ ..|.+.|.++++++.+ +++.|
T Consensus 89 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~------v~d~~~L~~VA~ts~~-----~~~~l 157 (529)
T CHL00093 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARP------VEDIQAITQVASISAG-----NDEEV 157 (529)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHHHhcc-----ChHHH
Confidence 999999999999999999999999999999999999999999999875 2378889999887655 58899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCC-----Ccc----cccCceEEEEEeecccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG-----SIK----NMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~-----~~~----~~~n~kIlll~~~l~~~ 251 (544)
++|+++|+.++++++. |+++. .++...++++++|++|++++.+ +++ .++||+|++++++|++.
T Consensus 158 ~~lv~eAv~~vg~~g~--i~~~~------g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~ 229 (529)
T CHL00093 158 GSMIADAIEKVGREGV--ISLEE------GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLV 229 (529)
T ss_pred HHHHHHHHHHhccCCc--eeecC------CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCch
Confidence 9999999999986553 65531 2334578899999999988732 243 58999999999998742
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHH--HHHH----CCeEEEEecC-----H
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALH--FCER----YKLMVLKISS-----K 320 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~--~l~~----~~I~vv~~v~-----~ 320 (544)
+ ..+.++++.+.+.+++++|++++|++.++. |+++ .+|+++++++ +
T Consensus 230 ~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k 286 (529)
T CHL00093 230 Q-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRK 286 (529)
T ss_pred H-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchH
Confidence 2 236688999999999999999999996655 4577 5999999995 4
Q ss_pred HHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEe---------cCC----------------
Q 009082 321 FELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRN---------EGG---------------- 368 (544)
Q Consensus 321 ~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~---------~~~---------------- 368 (544)
++|+|||.+|||+++ +++++++++|+|+.|++.+ +++++|++ |+.
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 363 (529)
T CHL00093 287 AMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEK 363 (529)
T ss_pred HHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 889999999999999 4456677899999999775 67778763 211
Q ss_pred --------CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhc-cccChHHHHHH
Q 009082 369 --------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF-KETGLDQYAIA 439 (544)
Q Consensus 369 --------~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~-~~~~~~~~~~~ 439 (544)
++..+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|+++|.+|++++. ..+++++++++
T Consensus 364 l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~ 442 (529)
T CHL00093 364 LQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGAL 442 (529)
T ss_pred HHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 12588899999999999999999999999999999998 999999999999999999886 78899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhch
Q 009082 440 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 519 (544)
Q Consensus 440 ~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~i 519 (544)
+||+||+.||++|++|||+|+.+++++++.. +.++|||+.+|+++||++.|||||+.+|.++|+.|+|+|++||+|
T Consensus 443 ~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 443 IVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999754 458999999999999999999999999999999999999999999
Q ss_pred hhhhccCCC
Q 009082 520 DQIIMAKPA 528 (544)
Q Consensus 520 D~ii~~~~~ 528 (544)
|++|..+|.
T Consensus 519 d~ii~~~~~ 527 (529)
T CHL00093 519 ECIIVDKKE 527 (529)
T ss_pred HHHHHcCCC
Confidence 999998763
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=5e-84 Score=701.87 Aligned_cols=455 Identities=21% Similarity=0.304 Sum_probs=408.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCCch
Q 009082 26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGAN 101 (544)
Q Consensus 26 ~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGtt 101 (544)
++++..+++|..|+++|++||||+|++|||+++.|+++|||||+||+++|+++||+ |+|+++++++|++++|||||
T Consensus 66 ~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTT 145 (600)
T PLN03167 66 SAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145 (600)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCcc
Confidence 69999999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhHH
Q 009082 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181 (544)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ls 181 (544)
|++||+++||+++.+++++|+||..|++||+.|.+.+++.|++++.+ +.+ +.|.++++++.++ ++.|+
T Consensus 146 TvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~------v~d-~~L~~vA~tS~~~-----~~~i~ 213 (600)
T PLN03167 146 TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKE------VED-SELADVAAVSAGN-----NYEVG 213 (600)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCH-HHHHHHHHHhccC-----cHHHH
Confidence 99999999999999999999999999999999999999999999875 223 5699998877654 67899
Q ss_pred HHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCc-eeEeeEEEeecCC---------CCcccccCceEEEEEeecccc
Q 009082 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 182 ~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (544)
+|+++|+.++++++. ++++ .|++.+|+ ++++|++|++++. +|+++++||+|+++++.
T Consensus 214 ~liaeAv~~Vg~~g~--i~v~-------~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~---- 280 (600)
T PLN03167 214 NMIAEAMSKVGRKGV--VTLE-------EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK---- 280 (600)
T ss_pred HHHHHHHHHhccCCc--EEec-------cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc----
Confidence 999999999986553 6655 58889887 9999999998863 57899999999999985
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHH------HCCeEEEEecC-----H
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE------RYKLMVLKISS-----K 320 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~------~~~I~vv~~v~-----~ 320 (544)
+++++++. ++++.+.+.++++||++++|++.++++|. ..+|+++++++ +
T Consensus 281 ---------i~~~~~l~-----------~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~ 340 (600)
T PLN03167 281 ---------ITNARDLI-----------GILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKS 340 (600)
T ss_pred ---------cCCHHHHH-----------HHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchH
Confidence 56666666 45567888999999999999999999998 68899999997 7
Q ss_pred HHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEE-----ECC--------eEEEEEEecCC------------
Q 009082 321 FELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEE-----IGG--------ARVTIVRNEGG------------ 368 (544)
Q Consensus 321 ~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~~~~~------------ 368 (544)
++|+|||.+|||+++ +++++++++|+|+.|++.+ +|+ +++.+|+++..
T Consensus 341 ~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~ 420 (600)
T PLN03167 341 QYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLN 420 (600)
T ss_pred HHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 899999999999999 2556677899999999987 776 47777776530
Q ss_pred -----CcceEEEE-EeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHH-HHHHH
Q 009082 369 -----GNSVSTVV-LRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQY-AIAKF 441 (544)
Q Consensus 369 -----~~~~~TIl-l~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~-~~~~~ 441 (544)
-.+.+|++ |||+|+.+++|++|+++||++++|+++++| +|||||++|++++.+|++++...++++|+ ++++|
T Consensus 421 ~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~ 499 (600)
T PLN03167 421 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIV 499 (600)
T ss_pred HHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 02245555 999999999999999999999999999999 99999999999999999988778788775 59999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhh
Q 009082 442 AESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQ 521 (544)
Q Consensus 442 a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ 521 (544)
++||+.||++|++|||+|+.+++.+|+.. ++.++|||+.+|+++||++.|||||+.||+++|+.|+++|++||+||+
T Consensus 500 ~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~ 576 (600)
T PLN03167 500 KRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDC 576 (600)
T ss_pred HHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999743 356899999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q 009082 522 IIMAKPAG 529 (544)
Q Consensus 522 ii~~~~~~ 529 (544)
+|..+|..
T Consensus 577 iI~~~~~~ 584 (600)
T PLN03167 577 VVVEIKEP 584 (600)
T ss_pred HhhcCCCC
Confidence 99998654
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-80 Score=608.17 Aligned_cols=492 Identities=26% Similarity=0.412 Sum_probs=467.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhHH
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (544)
..++.-|+.++..+.+++++.+||.|..||+++..|++.+|.||.+.+.+|+++||-+-++..++-+|++..||||||+|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccC-CchhhHHHH
Q 009082 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPL 183 (544)
Q Consensus 105 lL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~ls~l 183 (544)
+|+++|+++|...+..|+||..|.+||+.|.+.++++|+..+.+ .+++.|..+++|++.+|+. ...+.++++
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~-------~~~~~L~~va~tsl~Tkv~~~la~~lt~~ 168 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSRE-------VDRETLKDVARTSLRTKVHAELADVLTPI 168 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccc-------hhHHHHHHHHHHhhcCcccHHHHhHhHHH
Confidence 99999999999999999999999999999999999999965543 4789999999999999964 567899999
Q ss_pred HHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccccccceEEEE
Q 009082 184 IADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLI 261 (544)
Q Consensus 184 v~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i 261 (544)
+++|++.+.+. ...+|+..++|+++..++..|+.+++|++++++.. .||++++|+.|+++|.+|||+|++.++.+-+
T Consensus 169 vv~aVl~i~~~-~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffY 247 (520)
T KOG0359|consen 169 VVDSVLCIRRQ-EEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFY 247 (520)
T ss_pred HHhhheeeccC-CCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhc
Confidence 99999998732 23599999999999999999999999999999874 5999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCC----cEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--
Q 009082 262 HNAEQLENYAKTEEAKVEGLIKAVAESGA----EVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM-- 335 (544)
Q Consensus 262 ~~~~~l~~~~~~E~~~l~~~v~~i~~~~v----~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii-- 335 (544)
++.++.+.+...|++++.+.+++|++++. -|||+|++|||..++.|++.||+++||.++..|||+..+||+..+
T Consensus 248 sta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ns 327 (520)
T KOG0359|consen 248 STAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNS 327 (520)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecc
Confidence 99999999999999999999999998874 368999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChh
Q 009082 336 LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAAT 415 (544)
Q Consensus 336 l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~ 415 (544)
++|++++.+|+|+.|++..+|+++|+|+++|++ +++|||+++||+++.+.+++.+++|+|++++++++++.++||+|++
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~-p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~ 406 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN-PSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAF 406 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCC-CcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHH
Confidence 999999999999999999999999999999984 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCcc
Q 009082 416 EIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNV 495 (544)
Q Consensus 416 E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi 495 (544)
|..++++|+...++.+++.++++++||+||..||++|+.|+|+|+.+.+.+|...|..+ ..|+|+.+|+..++...||
T Consensus 407 ~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi 484 (520)
T KOG0359|consen 407 EVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGI 484 (520)
T ss_pred HHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccc
Confidence 99999999988888999999999999999999999999999999999999999998754 4599999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 496 WDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 496 ~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
||.+.||+++|+.+.-+|+.||-+|+|+.+..
T Consensus 485 ~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~ 516 (520)
T KOG0359|consen 485 YDNYSVKKQLLRSEAVIATNLLLVDEIIRAGM 516 (520)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999998754
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-69 Score=518.58 Aligned_cols=371 Identities=29% Similarity=0.472 Sum_probs=350.7
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcC
Q 009082 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (544)
....| .++.++|+.+.++++++++||+||.|++|+++.+.|++++|||| +|++++++...+..|+.++||
T Consensus 22 ~Ri~G-~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgd 91 (400)
T KOG0357|consen 22 DRLFG-LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGD 91 (400)
T ss_pred chhhH-HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhcc
Confidence 34455 49999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchh
Q 009082 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEE 178 (544)
Q Consensus 99 Gttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 178 (544)
|||.+++|++.+++++.+++.+|+||..|.+||..+.+.+++.|++.+.+ +.
T Consensus 92 GtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~------~e---------------------- 143 (400)
T KOG0357|consen 92 GTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDP------FE---------------------- 143 (400)
T ss_pred CCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccc------cc----------------------
Confidence 99999999999999999999999999999999999999998888776543 10
Q ss_pred hHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCcccccCceEEEEEeeccccccccceE
Q 009082 179 ILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGT 258 (544)
Q Consensus 179 ~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~~~n~kIlll~~~l~~~~~~~~~~ 258 (544)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--c
Q 009082 259 VLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--L 336 (544)
Q Consensus 259 ~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii--l 336 (544)
+.++++++++.|+++++|||++||++.++|-+++..+|||++-.++|.||..||++|+ |
T Consensus 144 -------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF 204 (400)
T KOG0357|consen 144 -------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRF 204 (400)
T ss_pred -------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccH
Confidence 3478888999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCCCCccceeEEEEEEC--CeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCh
Q 009082 337 CQPNPDDLGYVDSVSVEEIG--GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAA 414 (544)
Q Consensus 337 ~~l~~~~lG~~~~v~~~~ig--~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~ 414 (544)
+++++++||+|+.|++..+| .+++..+++|++ ++.+||.+||+++.+++|.+|++|||||++|+++++.++|+|||+
T Consensus 205 ~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~n-skaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGa 283 (400)
T KOG0357|consen 205 SELTAEKLGFAGLVREISFGTTKDKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGA 283 (400)
T ss_pred hhhCHhhccccceEEEEecccccceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCch
Confidence 99999999999999999999 589999999995 999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCeeeEecCCCcccccccC
Q 009082 415 TEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDLENGVCADISTM 493 (544)
Q Consensus 415 ~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~-~~~~~gid~~~~~i~d~~~~ 493 (544)
+|+.||-++.+.+.++++.+||++++||+||++||..|++|||++|++.++++++.+-+ +.+.+|+|+......||++.
T Consensus 284 aEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~ 363 (400)
T KOG0357|consen 284 AEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQ 363 (400)
T ss_pred HHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999988754 56788999988888999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 494 NVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 494 gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
+++|++..|++.+..|++++.|||+||+|+.+..
T Consensus 364 ~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 364 HVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred ccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 9999999999999999999999999999987643
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-48 Score=394.73 Aligned_cols=463 Identities=21% Similarity=0.299 Sum_probs=385.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (544)
.+++...++++..|++++..|+||+||+++|-+..|.|.|||||.|+.+++.+.+++ |+++++.+....+..||||
T Consensus 23 ~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGt 102 (550)
T KOG0356|consen 23 KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGT 102 (550)
T ss_pred HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCc
Confidence 479999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||+.+|+.++..++.+-+.+|.+|..+.+|...+.+...+.|.+++.+ +...+.+.+++. ++. +.+.+.
T Consensus 103 ttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~------Vtt~eeIaqVAt--iSA---ngD~~i 171 (550)
T KOG0356|consen 103 TTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKP------VTTPEEIAQVAT--ISA---NGDKEI 171 (550)
T ss_pred chHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHh--hhc---CCcHHH
Confidence 999999999999999999999999999999999999999999999886 456889999875 332 458889
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCC-CceeEeeEEEeecCCCCcccccCceEEEEEeeccccccccceEE
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLH-NSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTV 259 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~-dS~li~Givl~~~~~~~~~~~~n~kIlll~~~l~~~~~~~~~~~ 259 (544)
.+++.+|+.++++++. +.++ .|.... +.++++|+-|++++. .|+.....+ ...+
T Consensus 172 g~li~~a~~kvG~~GV--Itv~-------~gkt~~delev~eGmkfdrGyi---------------SPyfi~~~k-~~~~ 226 (550)
T KOG0356|consen 172 GNLISDAMKKVGRKGV--ITVK-------DGKTLEDELEVIEGMKFDRGYI---------------SPYFITSSK-KQKV 226 (550)
T ss_pred HHHHHHHHHHhCcCCe--EEee-------cCCccccchhhhhccccccccc---------------Cccccccch-hhhh
Confidence 9999999999998875 5554 465654 678999999999974 222221111 2233
Q ss_pred EEcCHHHHHHHHH-HHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHH--H----CCeEEEEecC-----HHHHHHHH
Q 009082 260 LIHNAEQLENYAK-TEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE--R----YKLMVLKISS-----KFELRRFC 327 (544)
Q Consensus 260 ~i~~~~~l~~~~~-~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~--~----~~I~vv~~v~-----~~~le~Ia 327 (544)
+|.++.-+....+ .--+.+.+.++.-.+...++++....++.+++..|- + ..+++++.++ +..+.+++
T Consensus 227 e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Dia 306 (550)
T KOG0356|consen 227 EFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIA 306 (550)
T ss_pred hhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHH
Confidence 3333333332222 222345577777777788999999999999887654 2 5578888887 45699999
Q ss_pred HHhCCeEe--------cCCCCCCCCccceeEEEEEEC-----C--------eEEEEEEe-----------c-------CC
Q 009082 328 RTTGAVAM--------LCQPNPDDLGYVDSVSVEEIG-----G--------ARVTIVRN-----------E-------GG 368 (544)
Q Consensus 328 ~~tGa~ii--------l~~l~~~~lG~~~~v~~~~ig-----~--------~~~~~~~~-----------~-------~~ 368 (544)
.+||+.++ ++..+.+++|.|..+.+..-. + .++..++. . +.
T Consensus 307 i~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~l 386 (550)
T KOG0356|consen 307 ILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKL 386 (550)
T ss_pred HHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHh
Confidence 99999998 346677899999999876511 0 00000000 0 01
Q ss_pred CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHH
Q 009082 369 GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMV 448 (544)
Q Consensus 369 ~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~i 448 (544)
+..+++|.++|.++.+++|.+.+++|||+++++++++| +|||||++.++|+..|.+....-...++.+++++.+||..|
T Consensus 387 s~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 387 SGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred cCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 57899999999999999999999999999999999999 99999999999999998876533456778899999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCC
Q 009082 449 PKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 528 (544)
Q Consensus 449 p~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~ 528 (544)
..+++.|+|.|+..++.+++. ..+|||..+|+++||.+.||+||+.|.+.+|..|..+++++++++.+|...|.
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk 539 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPK 539 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccc
Confidence 999999999999999999982 27899999999999999999999999999999999999999999999988877
Q ss_pred CC
Q 009082 529 GG 530 (544)
Q Consensus 529 ~~ 530 (544)
..
T Consensus 540 ~~ 541 (550)
T KOG0356|consen 540 EE 541 (550)
T ss_pred cc
Confidence 54
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.6e-38 Score=314.05 Aligned_cols=227 Identities=19% Similarity=0.257 Sum_probs=207.0
Q ss_pred CchhhHHHHHHHHHHHhCCCC--CCcccch-hhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecc
Q 009082 175 GQEEILCPLIADACIQVCPKN--PANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (544)
Q Consensus 175 ~~~~~ls~lv~~a~~~~~~~~--~~~~~~~-~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~ 249 (544)
.+.++|++++++|+..+.+.. ...+|++ +|+|.+++||++.||++++|+++++.+. .||++++||||++++++|+
T Consensus 18 ~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le 97 (261)
T cd03334 18 SWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLE 97 (261)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeec
Confidence 357899999999999996431 1258886 5999999999999999999999998874 5999999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009082 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (544)
Q Consensus 250 ~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~ 329 (544)
+.+++. ++.++..+.+.|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||++
T Consensus 98 ~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~ 170 (261)
T cd03334 98 YQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRC 170 (261)
T ss_pred cccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHH
Confidence 998863 4678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEe--c-CCCCCCCCccceeEEEEEECC-----eEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHH
Q 009082 330 TGAVAM--L-CQPNPDDLGYVDSVSVEEIGG-----ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKA 401 (544)
Q Consensus 330 tGa~ii--l-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~ 401 (544)
|||+++ + ++++++.+|+|+.|++.++|+ ++|++|++|+ .++++||+|||+|+.+++|+||+++||++++++
T Consensus 171 tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~-~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~ 249 (261)
T cd03334 171 TGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCP-KELGCTILLRGGDLEELKKVKRVVEFMVFAAYH 249 (261)
T ss_pred hCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCC-CCceeEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 3 478889999999999999995 6899999997 488999999999999999999999999999999
Q ss_pred HhcCCeEE
Q 009082 402 MCRDSRIV 409 (544)
Q Consensus 402 ~~~~~~vv 409 (544)
+..++.++
T Consensus 250 ~~le~~~~ 257 (261)
T cd03334 250 LKLETSFL 257 (261)
T ss_pred HHHhHHHH
Confidence 98876443
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=5.3e-34 Score=274.39 Aligned_cols=204 Identities=27% Similarity=0.470 Sum_probs=189.7
Q ss_pred HHHHHHHHHhhccccCCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccc
Q 009082 159 EEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM 236 (544)
Q Consensus 159 ~~l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~ 236 (544)
+.|.++++|+++||+..+.+.+++++++|+..++++.. .++.++|+|.+++||++.+|++++|++|++++. .||+++
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~ 80 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNR-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRL 80 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCC-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEc
Confidence 46889999999999855789999999999999976432 477889999999999999999999999999884 589999
Q ss_pred cCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEE
Q 009082 237 EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK 316 (544)
Q Consensus 237 ~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~ 316 (544)
+||||++++++|++ ||+++++|++.++++|.++||++++
T Consensus 81 ~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~~v~ 119 (209)
T cd03333 81 ENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIMAVR 119 (209)
T ss_pred CCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCEEEE
Confidence 99999999999876 9999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHH
Q 009082 317 ISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDD 394 (544)
Q Consensus 317 ~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~d 394 (544)
++++++|+|||++|||+++ +++++++.+|+|+.|++.++|++++++|+++. .+..+||+|||+|+.+++|+||+++|
T Consensus 120 ~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~-~~~~~tIllrG~t~~~l~e~kr~l~d 198 (209)
T cd03333 120 RVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCK-GGKAATILLRGATEVELDEVKRSLHD 198 (209)
T ss_pred eCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCC-CCCEEEEEEECCCHhHHHHHHHHHHH
Confidence 9999999999999999999 88899999999999999999999999999987 48999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 009082 395 GVNTYKAMCRD 405 (544)
Q Consensus 395 al~~l~~~~~~ 405 (544)
|++++++++++
T Consensus 199 al~~~~~~~~~ 209 (209)
T cd03333 199 ALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHhhC
Confidence 99999999764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.78 E-value=1.3e-18 Score=195.22 Aligned_cols=231 Identities=16% Similarity=0.227 Sum_probs=197.4
Q ss_pred chhhHHHHHHHHHHHhCCCCC---CcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccc
Q 009082 176 QEEILCPLIADACIQVCPKNP---ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 176 ~~~~ls~lv~~a~~~~~~~~~---~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~ 250 (544)
|.+.+..++.+|...+.++.. .....++|+|.++.||...+|+++.|+++.+... .|..+.++|||+++.++|++
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~ley 412 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEY 412 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhh
Confidence 456788899999998877521 1233468999999999999999999999999874 68999999999999999999
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHh
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~t 330 (544)
.+-..+ +.+ +....++|.++++..|.+|...+++++++.++|+..|+++|...+|.++-++++.-|+||+++|
T Consensus 413 qrisn~----lsS---~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~t 485 (1598)
T KOG0230|consen 413 QRISNQ----LSS---IETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCT 485 (1598)
T ss_pred hhhhcc----ccc---hHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHh
Confidence 765422 444 3444456899999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEe--cCCCCCCCCccceeEEEEEEC-----CeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 331 GAVAM--LCQPNPDDLGYVDSVSVEEIG-----GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 331 Ga~ii--l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
||.|+ ++.++...+|+|+.+++.++- .+.+.+|++|+ ....|||++||....++.+.++.++-+.-+..+..
T Consensus 486 ga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~-~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~ 564 (1598)
T KOG0230|consen 486 GADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCP-KPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLA 564 (1598)
T ss_pred cCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCC-CCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 888999999999999988765 45678999998 58999999999999999999999999988888775
Q ss_pred cCCeEEeCCCh
Q 009082 404 RDSRIVPGAAA 414 (544)
Q Consensus 404 ~~~~vvpGGG~ 414 (544)
-+..++.--|+
T Consensus 565 LE~SflaDe~a 575 (1598)
T KOG0230|consen 565 LETSFLADEGA 575 (1598)
T ss_pred HhhhhhhccCC
Confidence 54445544444
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=63.89 E-value=24 Score=30.58 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
...+.|++.|+++||+. .+.+-+.++|++.||-++...+..-=+.|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 35677899999999998 67999999999999999998884433444444433
No 47
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=55.27 E-value=53 Score=26.53 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHHHHh
Q 009082 278 VEGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTT 330 (544)
Q Consensus 278 l~~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia~~t 330 (544)
+++-++.|.+-.+.+|+..+++++... .+|.+.||.++...++.+|-+.|-.-
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi~ 74 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGIN 74 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCC
Confidence 456667777777899999999999654 46678999999999998888776543
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=55.09 E-value=29 Score=28.48 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~ 319 (544)
...+.|...++++|++. ++.+-+.+.|.+.||-++...+
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 45555677899999996 6999999999999999998776
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=47.97 E-value=58 Score=26.52 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=32.3
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~ 319 (544)
..+.+...++++|++.+ +.+-+...|.+.||.++...+
T Consensus 53 ~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 44456678999999984 999999999999999998775
No 50
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=45.57 E-value=66 Score=25.75 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=31.4
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~ 319 (544)
..+.+...+++++|+. .+.+.+...|.+.||-++....
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTS
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCC
Confidence 4444666899999988 5799999999999999999744
No 51
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=42.59 E-value=78 Score=29.09 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEE--ecC-----HHHHHHHHHHhCC
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK--ISS-----KFELRRFCRTTGA 332 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~--~v~-----~~~le~Ia~~tGa 332 (544)
+|.|.+.+++|||..........+.|.+.|+.++- ... .+.++.++.++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 55678899999998766555567788999985433 222 2356677777765
No 52
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=41.61 E-value=69 Score=31.98 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEe--cC----HHHHHHHHHHhCCeE
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKI--SS----KFELRRFCRTTGAVA 334 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~--v~----~~~le~Ia~~tGa~i 334 (544)
-+|.|...+++|||.....++...+.|.+.||.++-. .+ .+.++.++.++|..-
T Consensus 83 n~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~~ 142 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGREE 142 (289)
T ss_pred CHHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCHH
Confidence 3566889999999998888887888899998766432 12 356888899888654
No 53
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=37.75 E-value=1e+02 Score=28.93 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCC----eEEEEecC
Q 009082 276 AKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK----LMVLKISS 319 (544)
Q Consensus 276 ~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~----I~vv~~v~ 319 (544)
..+++.++.+++.++++|+++.|.++..--+|.+.. |-++..++
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 458899999999999999999999998877777644 77877765
No 54
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.11 E-value=97 Score=29.78 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHhcCCcEEEeCCccChH-HHHHHHHCCeEEEEec--C----HHHHHHHHHHhCCe
Q 009082 281 LIKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~-~l~~l~~~~I~vv~~v--~----~~~le~Ia~~tGa~ 333 (544)
=+|.|.+.+++|||.....++. ..+.|.+.++.++-.- . .+.++.|+.++|-.
T Consensus 49 n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 49 DLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred CHHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 3566889999999987655444 4788899988655422 2 34588899998875
No 55
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=36.99 E-value=1.4e+02 Score=23.82 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
+.++.|.+-.+.+||...+.++... +++++++|.++...++.+| ..++|-
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eL---G~a~G~ 71 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKL---GKACGI 71 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHHCC
Confidence 4556677778899999999998654 5567899999988776554 444443
No 56
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=36.99 E-value=92 Score=32.39 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=39.5
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEec---C----HHHHHHHHHHhCCe
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAV 333 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v---~----~~~le~Ia~~tGa~ 333 (544)
-+|+|+.++++|||......+...+.|.+.||.++... + .+.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 47788999999999876555566788999999886543 1 24567788887764
No 57
>PRK06683 hypothetical protein; Provisional
Probab=34.25 E-value=1.6e+02 Score=23.53 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
..++.|.+-.+.+||...+.++... +++..++|.++...++.+ |..++|-
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~e---LG~A~G~ 71 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRK---LGKVAGI 71 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCC
Confidence 4455677778899999999998654 456789999988876654 4555554
No 58
>PRK07283 hypothetical protein; Provisional
Probab=34.08 E-value=1.6e+02 Score=24.26 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTG 331 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia~~tG 331 (544)
...+.|.+-.+.+||.+.+.++... +.+..++|.++...++++ |..++|
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~e---LG~a~G 77 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLE---LSAAVG 77 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhC
Confidence 4456677777899999999998766 556678999998876654 555555
No 59
>PRK07714 hypothetical protein; Provisional
Probab=33.86 E-value=1.7e+02 Score=24.23 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
...+.+.+-.+.+||...+.++... +++..++|.++...++++| ..++|-
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eL---G~a~Gk 78 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQL---GHAIGK 78 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHH---HHHhCC
Confidence 4556677777899999999988654 4456789999988777555 445553
No 60
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=32.87 E-value=1.2e+02 Score=24.56 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCcEEEeCCccChHH-----HHHHHHCCeEEEEecCHHHHHHHHH
Q 009082 278 VEGLIKAVAESGAEVIVSGAAVGEMA-----LHFCERYKLMVLKISSKFELRRFCR 328 (544)
Q Consensus 278 l~~~v~~i~~~~v~lVi~~~~i~~~~-----l~~l~~~~I~vv~~v~~~~le~Ia~ 328 (544)
+++..+.+.+-.+.+||.+.++++.. ..++.+++|.++...++.+|-+.+-
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~g 75 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELGRACG 75 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHHHHTT
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHHHHHC
Confidence 34566667777788998888887732 3467799999999987666555443
No 61
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.90 E-value=1.9e+02 Score=23.22 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
..++.|.+-++.+||...+.++... +++..++|.++..-++.+| ..++|-
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eL---G~A~G~ 68 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKEL---GVMCGI 68 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHH---HHHHCC
Confidence 3455677778899999999998654 4566799999877666554 444443
No 62
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=31.30 E-value=54 Score=35.02 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhcc
Q 009082 389 ERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFK 429 (544)
Q Consensus 389 ~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~ 429 (544)
+|.+.+|+..+|++ ++|-+|.|||+-.-.+...|+.+++.
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 35677888888886 66789999999888888888887765
No 63
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.94 E-value=1.2e+02 Score=29.20 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=36.8
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC----HHHHHHHHHHhCCeEe
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAVAM 335 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~----~~~le~Ia~~tGa~ii 335 (544)
-+|+|..++++|||+.....+ ..+.|.+.+..++-..+ .+.++.++.++|-.--
T Consensus 58 ~~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~~~ 115 (248)
T cd01138 58 NLEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKEDE 115 (248)
T ss_pred CHHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcHHH
Confidence 456688899999999876655 66777776644432222 4678888888886433
No 64
>PF12846 AAA_10: AAA-like domain
Probab=30.94 E-value=1.2e+02 Score=29.87 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCccChHH-----HHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009082 276 AKVEGLIKAVAESGAEVIVSGAAVGEMA-----LHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (544)
Q Consensus 276 ~~l~~~v~~i~~~~v~lVi~~~~i~~~~-----l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ 333 (544)
+.+.+++....+.|+.+++.+..++++. ..++.+.+..++-++...+.+.+++..|.+
T Consensus 240 ~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 240 EFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 3556778888899999999999998888 789999999999999888888899998865
No 65
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.55 E-value=1.4e+02 Score=27.32 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=34.2
Q ss_pred HHHHHHhcCCcEEEeCCccChH-HHHHHHHCCeEEEEec-----C--HHHHHHHHHHhC
Q 009082 281 LIKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKIS-----S--KFELRRFCRTTG 331 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~-~l~~l~~~~I~vv~~v-----~--~~~le~Ia~~tG 331 (544)
=+|.|...+++|||......+. ....|.+.||.++-.. . .+.++.+..++|
T Consensus 61 n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 61 NVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred CHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 3677899999999987665553 7788899997554332 1 133555666665
No 66
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=28.73 E-value=1.5e+02 Score=29.10 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHhcCCcEEEeCCc-cChHHHHHHHHCCeEEEEec--C----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~-i~~~~l~~l~~~~I~vv~~v--~----~~~le~Ia~~tGa~ 333 (544)
+|.|..++++||+...+ -.....+.|.+.||.++..- + .+.++.+++++|-.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 123 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCCH
Confidence 56678999999998644 33456678889887776542 2 24566777777753
No 67
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.74 E-value=2.4e+02 Score=23.34 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCcEEEeCCccChHH----HHHHHHCCeEEEEec-CHHHHHHHHHHhC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMA----LHFCERYKLMVLKIS-SKFELRRFCRTTG 331 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~----l~~l~~~~I~vv~~v-~~~~le~Ia~~tG 331 (544)
..++.|.+-.+.+||.+.+.++.. .+++.+++|.++... ++++| ..++|
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eL---G~a~G 76 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVEL---GTLCG 76 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHH---HHHhC
Confidence 455667777889999998888854 356678999998874 66554 55555
No 68
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.56 E-value=2.3e+02 Score=24.29 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCcEEEeCCccChH-H----HHHHHHCCeEEEEecCHHHHHHHHH
Q 009082 279 EGLIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFCR 328 (544)
Q Consensus 279 ~~~v~~i~~~~v~lVi~~~~i~~~-~----l~~l~~~~I~vv~~v~~~~le~Ia~ 328 (544)
+...+.|.+-.+.+||.+.++++. . .+++.+.+|..+...++++|-+.+-
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~G 86 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAAG 86 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhC
Confidence 355666677778999999999763 3 3457789999888877766655544
No 69
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=26.34 E-value=2.4e+02 Score=24.42 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCcEEEeCCccChH-H----HHHHHHCCeEEEEecCHHHHHHHH
Q 009082 278 VEGLIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 278 l~~~v~~i~~~~v~lVi~~~~i~~~-~----l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
.++.++.|.+-.+.+||.+.++++. . ..++.+++|.++..-++++|-+.+
T Consensus 35 ~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a~ 89 (122)
T PRK04175 35 TNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAA 89 (122)
T ss_pred HHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 3456666777778999999999773 2 245678999988877776554443
No 70
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=26.10 E-value=69 Score=27.89 Aligned_cols=54 Identities=9% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccC--hHHHHHHHHCCeEEEEecC
Q 009082 266 QLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG--EMALHFCERYKLMVLKISS 319 (544)
Q Consensus 266 ~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~--~~~l~~l~~~~I~vv~~v~ 319 (544)
++..+..-..+.-++.++++.+.++++||.+.+.. +...+.++++++.+++-..
T Consensus 58 E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 58 ESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 44444444445666788889999999988877764 4778899999999997554
No 71
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.91 E-value=1.9e+02 Score=27.54 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=36.2
Q ss_pred HHHHHhcCCcEEEeCCcc-ChHHHHHHHHCCeEEEEe--c-C----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAV-GEMALHFCERYKLMVLKI--S-S----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i-~~~~l~~l~~~~I~vv~~--v-~----~~~le~Ia~~tGa~ 333 (544)
+|+|.+++++||+..... +....+.|.+.||.++-. . + .+.++.++.++|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 466889999999986543 445678889999876542 2 2 34567777777764
No 72
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=23.95 E-value=3.1e+02 Score=23.00 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
...+.|.+-++.+||...+.++... +++..++|.++...++++ |..++|-
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk 77 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGR 77 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCC
Confidence 4455677777899999999988654 445568999988877655 5555664
No 73
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=23.73 E-value=2.9e+02 Score=23.77 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCcEEEeCCccChH-----HHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009082 278 VEGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRT 329 (544)
Q Consensus 278 l~~~v~~i~~~~v~lVi~~~~i~~~-----~l~~l~~~~I~vv~~v~~~~le~Ia~~ 329 (544)
++...+.|.+-.+.+|+.+.++++. ...+|+++||..+...++.+|-+.+-.
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g~ 88 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVGK 88 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCC
Confidence 4556666666678999999999942 235677899999999998887766543
No 74
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=23.46 E-value=2.2e+02 Score=28.13 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCcEEEeCCccChHHH-----HHHHHCCeEEEEecCHHHHHH
Q 009082 279 EGLIKAVAESGAEVIVSGAAVGEMAL-----HFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 279 ~~~v~~i~~~~v~lVi~~~~i~~~~l-----~~l~~~~I~vv~~v~~~~le~ 325 (544)
......|.+..+.+||++.++++.-+ .+|.+++|..+-.-++++|-.
T Consensus 138 n~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG~ 189 (266)
T PTZ00365 138 NHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGK 189 (266)
T ss_pred HHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHHH
Confidence 34455566667899999999998532 567789999988888766544
No 75
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=23.42 E-value=2.7e+02 Score=23.52 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCcEEEeCCccChHH----HHHHHHCCeEEEEe-cCHHHHHHHHHHhC
Q 009082 279 EGLIKAVAESGAEVIVSGAAVGEMA----LHFCERYKLMVLKI-SSKFELRRFCRTTG 331 (544)
Q Consensus 279 ~~~v~~i~~~~v~lVi~~~~i~~~~----l~~l~~~~I~vv~~-v~~~~le~Ia~~tG 331 (544)
+..++.|.+-.+.+||.+.+.++.. .+++..++|.++.. -++++ |..++|
T Consensus 31 ~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~e---LG~A~G 85 (108)
T PTZ00106 31 KSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNND---LGTACG 85 (108)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHH---HHHHhC
Confidence 3556667777889999999998864 45677899999875 55554 455555
No 76
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=23.02 E-value=2.8e+02 Score=23.58 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC----HHHHHHHHHHhCC
Q 009082 279 EGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGA 332 (544)
Q Consensus 279 ~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~----~~~le~Ia~~tGa 332 (544)
...++.+ .++++|||. +|.+.+...|.+.||-+++.-. .+-|+.+....-.
T Consensus 55 ~~~~~~l--~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 55 APKIEAL--KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred HHHHHHh--CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 3444444 588999887 7899999999999999997432 4567777776633
No 77
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=22.47 E-value=2.3e+02 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~ 319 (544)
..++.+ .++++||+. ++.+-+...|.+.||-++....
T Consensus 58 ~~l~~l--~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 58 AIIKLL--SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred HHHHHH--cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 344433 589998887 7899999999999999996654
No 78
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=21.94 E-value=4.4e+02 Score=22.49 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=41.1
Q ss_pred HHHhcCCcEEEeCCcc------ChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 284 AVAESGAEVIVSGAAV------GEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 284 ~i~~~~v~lVi~~~~i------~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
.+...++.+|++.-++ ++.+..+|.+.++-++-.+..+-++|.-..-|+
T Consensus 56 ~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 56 ELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred HHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 3455789999886554 788999999999999999999999999888775
No 79
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=21.41 E-value=2.4e+02 Score=27.22 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=35.0
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEec--CH----HHHHHHHHHhCCeE
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS--SK----FELRRFCRTTGAVA 334 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v--~~----~~le~Ia~~tGa~i 334 (544)
+|+|+.++++|||......+.....|.+.+..++-.. +. +.++.+++++|..-
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~~ 116 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKEE 116 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcHH
Confidence 4557889999999987776655566666553433333 22 35778888888643
No 80
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=21.14 E-value=3.7e+02 Score=27.25 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii 335 (544)
+.++.+.+.++++|.+..+........+++.|+.++-.+..-+.-+-+.-.|+..+
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 46677788899999888777777788899999988877664444444444576555
No 81
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=20.94 E-value=1.8e+02 Score=28.31 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~ 319 (544)
+++.|..+.|+++|++...-..++.++..+.||..+..+.
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R 222 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFAR 222 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEec
Confidence 6788889999999999999999999999999999887665
No 82
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.72 E-value=3.5e+02 Score=27.71 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii 335 (544)
+.++.+.+.++.+|++..+.+.. ...|.+.||.++-.+..-..-+-+.-.|+..+
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 56777888999999998887765 58899999999877765444455666787666
No 83
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=20.36 E-value=3.3e+02 Score=23.26 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCcEEEeCC-----ccChHHHHHHHHCCeEEEEecCHHHH
Q 009082 277 KVEGLIKAVAESGAEVIVSGA-----AVGEMALHFCERYKLMVLKISSKFEL 323 (544)
Q Consensus 277 ~l~~~v~~i~~~~v~lVi~~~-----~i~~~~l~~l~~~~I~vv~~v~~~~l 323 (544)
.+.+.++.+.+.|+--+.... .+++.+.+++++.++.++.-+..--+
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~~~f 111 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWEVPF 111 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCCCCH
Confidence 466888899999986555543 48899999999999999987764333
No 84
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.29 E-value=2.5e+02 Score=27.30 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC-------HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS-------KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~-------~~~le~Ia~~tGa~ 333 (544)
+|.|..++++|||....-.+...++....++.++..-. .+.++.++.++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 56688899999998755444555556667777665322 23578888888864
No 85
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.04 E-value=2.4e+02 Score=28.71 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEeCCcc-----ChHHHHHHHHCCeEEEEec----C----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKIS----S----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i-----~~~~l~~l~~~~I~vv~~v----~----~~~le~Ia~~tGa~ 333 (544)
+|.|..++++|||..... +....+.|.+.||.++-.- + .+.++.++.++|-.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~~ 148 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGRE 148 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCCH
Confidence 667889999999986543 2356777888887655421 1 34577788888763
No 86
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=20.01 E-value=1.7e+02 Score=26.42 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 009082 383 SILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAM 461 (544)
Q Consensus 383 ~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~ 461 (544)
..-.+++.-.+.-..-++--.+.|.++|-. ...+++ ...++++.+.|+++|-.|.+++|+.|.
T Consensus 64 m~p~dRK~w~qsE~eRlk~e~e~g~Lipa~--------eV~~~~--------s~~~Kav~q~LetlPD~LERd~gL~p~ 126 (152)
T PF07278_consen 64 MTPKDRKAWWQSENERLKFEKETGQLIPAE--------EVRREM--------SEMAKAVVQVLETLPDILERDAGLPPE 126 (152)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcccCcHH--------HHHHHH--------HHHHHHHHHHHHHhhHHHHhcCCCCHH
Confidence 334455555555555566555666565432 111222 235678999999999999999999984
Done!