Query 009082
Match_columns 544
No_of_seqs 136 out of 1480
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9d_H T-complex protein 1 sub 100.0 5E-118 2E-122 968.8 34.4 542 1-544 1-567 (568)
2 1a6d_B Thermosome (beta subuni 100.0 2E-112 6E-117 922.8 50.7 527 11-544 7-540 (543)
3 3ruv_A Chaperonin, CPN; double 100.0 6E-111 2E-115 910.2 55.6 514 12-533 6-526 (543)
4 3ko1_A Chaperonin; 9-fold symm 100.0 2E-111 7E-116 913.3 48.3 525 10-542 15-547 (553)
5 3iyg_A T-complex protein 1 sub 100.0 5E-110 2E-114 900.9 58.6 503 19-527 4-529 (529)
6 1q3q_A Thermosome alpha subuni 100.0 4E-110 2E-114 904.1 53.9 513 11-529 9-528 (548)
7 1a6d_A Thermosome (alpha subun 100.0 2E-110 6E-115 906.6 49.7 511 11-529 8-525 (545)
8 3iyg_Q T-complex protein 1 sub 100.0 5E-109 2E-113 890.8 59.3 508 16-526 1-512 (512)
9 3iyg_H T-complex protein 1 sub 100.0 3E-109 1E-113 891.5 57.0 502 15-526 1-514 (515)
10 3iyg_G T-complex protein 1 sub 100.0 9E-109 3E-113 888.7 58.0 502 19-526 3-514 (515)
11 3iyg_B T-complex protein 1 sub 100.0 2E-108 7E-113 885.3 58.1 502 18-527 3-512 (513)
12 3iyg_D T-complex protein 1 sub 100.0 2E-108 7E-113 886.4 56.5 502 20-526 6-518 (518)
13 3p9d_G T-complex protein 1 sub 100.0 4E-110 1E-114 904.3 40.9 515 8-531 7-532 (550)
14 3p9d_A T-complex protein 1 sub 100.0 2E-108 6E-113 892.9 50.6 509 14-528 13-550 (559)
15 3iyg_E T-complex protein 1 sub 100.0 7E-107 2E-111 874.9 57.3 503 19-525 4-514 (515)
16 3p9d_D T-complex protein 1 sub 100.0 8E-109 3E-113 890.6 41.7 508 14-526 8-528 (528)
17 3iyg_Z T-complex protein 1 sub 100.0 6E-107 2E-111 874.2 55.5 495 22-525 7-516 (517)
18 3p9d_C T-complex protein 1 sub 100.0 1E-107 5E-112 885.3 42.0 512 10-527 4-587 (590)
19 3p9d_E T-complex protein 1 sub 100.0 2E-106 6E-111 877.3 47.6 502 22-527 42-559 (562)
20 3p9d_F T-complex protein 1 sub 100.0 2E-107 5E-112 884.8 37.3 516 13-532 5-543 (546)
21 3p9d_B T-complex protein 1 sub 100.0 1E-106 5E-111 874.6 36.3 506 13-528 5-520 (527)
22 3aq1_B Thermosome subunit; gro 100.0 4E-102 2E-106 833.7 40.8 486 54-544 1-497 (500)
23 1we3_A CPN60(groel); chaperoni 100.0 5.9E-93 2E-97 766.8 48.2 467 25-542 9-542 (543)
24 1kp8_A Groel protein; chaperon 100.0 7.6E-91 2.6E-95 749.2 46.7 453 25-530 9-527 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 4E-91 1.4E-95 752.0 33.4 453 25-529 10-528 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 4.6E-91 1.6E-95 748.8 33.7 457 25-535 9-530 (546)
27 1gml_A T-complex protein 1 sub 100.0 1.9E-35 6.5E-40 274.1 17.8 169 214-383 1-174 (178)
28 1ass_A Thermosome; chaperonin, 100.0 7.6E-31 2.6E-35 238.4 12.6 149 220-368 1-153 (159)
29 3m6c_A 60 kDa chaperonin 1; ch 99.0 3.8E-09 1.3E-13 95.9 15.0 140 217-397 2-169 (194)
30 3osx_A 60 kDa chaperonin; alph 99.0 1.8E-08 6.1E-13 91.7 16.5 136 221-397 13-176 (201)
31 1srv_A Protein (groel (HSP60 c 98.9 6.8E-09 2.3E-13 89.9 11.1 107 222-352 1-134 (145)
32 1o13_A Probable NIFB protein; 55.6 21 0.00072 30.2 6.0 53 280-333 67-119 (136)
33 2yx6_A Hypothetical protein PH 55.2 23 0.00077 29.2 6.0 53 280-333 54-106 (121)
34 1eo1_A Hypothetical protein MT 52.9 31 0.0011 28.4 6.6 52 281-333 57-108 (124)
35 2wfb_A Putative uncharacterize 49.8 25 0.00087 28.8 5.5 51 281-332 59-110 (120)
36 3ukw_C Bimax1 peptide; arm rep 40.5 10 0.00035 21.8 1.0 12 532-544 6-17 (28)
37 1rdu_A Conserved hypothetical 39.4 27 0.00093 28.4 4.0 52 281-333 54-105 (116)
38 2re2_A Uncharacterized protein 38.4 46 0.0016 28.0 5.4 52 280-333 70-121 (136)
39 3md9_A Hemin-binding periplasm 38.2 69 0.0024 29.6 7.3 53 282-334 52-112 (255)
40 2q8p_A Iron-regulated surface 36.8 36 0.0012 31.7 5.0 52 282-333 53-110 (260)
41 2r7a_A Bacterial heme binding 35.4 81 0.0028 29.1 7.3 52 282-333 52-112 (256)
42 3v7e_A Ribosome-associated pro 34.7 69 0.0024 24.3 5.4 48 280-327 18-69 (82)
43 2r79_A Periplasmic binding pro 34.3 75 0.0026 30.0 6.9 52 282-333 52-111 (283)
44 3psh_A Protein HI_1472; substr 34.3 64 0.0022 31.2 6.5 53 282-334 77-155 (326)
45 1n2z_A Vitamin B12 transport p 32.9 57 0.0019 30.0 5.6 52 282-333 50-108 (245)
46 2xzm_U Ribosomal protein L7AE 31.1 1.1E+02 0.0037 25.5 6.4 49 280-328 31-84 (126)
47 2lbw_A H/ACA ribonucleoprotein 30.3 1.2E+02 0.0042 24.8 6.7 49 280-328 27-80 (121)
48 2wi8_A Iron-uptake system-bind 30.3 84 0.0029 30.2 6.6 52 282-333 89-144 (311)
49 4hn9_A Iron complex transport 28.4 92 0.0031 30.3 6.5 51 282-333 109-165 (335)
50 2qtd_A Uncharacterized protein 28.1 1E+02 0.0034 24.3 5.6 47 283-331 50-96 (105)
51 2zkr_f 60S ribosomal protein L 27.7 1.5E+02 0.005 28.2 7.3 66 280-345 142-213 (266)
52 3tny_A YFIY (ABC transport sys 27.3 60 0.0021 31.0 4.9 53 282-334 89-145 (303)
53 2etv_A Iron(III) ABC transport 26.1 79 0.0027 31.0 5.6 52 282-333 89-151 (346)
54 3on1_A BH2414 protein; structu 25.0 1.4E+02 0.0049 23.4 5.9 49 279-327 24-76 (101)
55 3v7q_A Probable ribosomal prot 24.6 1.8E+02 0.0063 22.8 6.5 48 280-327 26-77 (101)
56 2ale_A SNU13, NHP2/L7AE family 23.7 1.1E+02 0.0036 25.9 5.1 49 279-327 38-91 (134)
No 1
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=5.5e-118 Score=968.81 Aligned_cols=542 Identities=44% Similarity=0.755 Sum_probs=487.3
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh
Q 009082 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (544)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP 80 (544)
|.|.+|+.+...+|++++++.+|.++++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||
T Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP 80 (568)
T 3p9d_H 1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHP 80 (568)
T ss_dssp ----CCCCCCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCH
T ss_pred CCCCCCCcchhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCH
Confidence 78899999999999999999999778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHH
Q 009082 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE 160 (544)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~ 160 (544)
+|+|++++|++|++++||||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+... +..+++.
T Consensus 81 ~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~--~~~~~~~ 158 (568)
T 3p9d_H 81 AVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEIT--DKNDKNE 158 (568)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCC--CCCTTHH
T ss_pred HHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886322 5678999
Q ss_pred HHHHHHHhhccccCCchhhHHHHHHHHHHHhCCC-----CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCccc
Q 009082 161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPK-----NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKN 235 (544)
Q Consensus 161 l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~-----~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~ 235 (544)
|.++++|+++||+.+++++|++|+++|+.+++++ +..+||+++|+|++++||+++||++++|++|++++.+||++
T Consensus 159 l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~~m~~~ 238 (568)
T 3p9d_H 159 LLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKS 238 (568)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBSSGGGS
T ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeecccCCcEE
Confidence 9999999999997666699999999999999763 33358999999999999999999999999999999999999
Q ss_pred cc---CceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCe
Q 009082 236 ME---KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL 312 (544)
Q Consensus 236 ~~---n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I 312 (544)
++ ||||++++|+|+++++++++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||
T Consensus 239 i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI 318 (568)
T 3p9d_H 239 LSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGI 318 (568)
T ss_dssp CCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTC
T ss_pred EecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCe
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCC-CcceEEEEEeCCCHhHHHHHH
Q 009082 313 MVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLE 389 (544)
Q Consensus 313 ~vv~~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIll~g~t~~~l~e~~ 389 (544)
++++++++.+|+|||++|||+++ +++++++++|+|+.|++..+|+++|++|++|+. .+++|||+|||+|+.+++|.|
T Consensus 319 ~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~e 398 (568)
T 3p9d_H 319 LVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIE 398 (568)
T ss_dssp EEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHH
Confidence 99999999999999999999999 899999999999999999999999999999962 388999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009082 390 RAVDDGVNTYKAMCR--DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL 467 (544)
Q Consensus 390 ~~i~dal~~l~~~~~--~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l 467 (544)
|++||||+++|++++ ++++|||||++|++|+.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|
T Consensus 399 r~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l 478 (568)
T 3p9d_H 399 RAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNL 478 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999 889999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHhc--------CCCeeeEecCCCc---ccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCC
Q 009082 468 YAEHAS--------GKTKVGIDLENGV---CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQ 536 (544)
Q Consensus 468 ~~~~~~--------~~~~~gid~~~~~---i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~~~~ 536 (544)
++.|.+ ++.++|||+.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.++|++|++
T Consensus 479 ~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~~~~~ 558 (568)
T 3p9d_H 479 YAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPRAPQG 558 (568)
T ss_dssp HHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC--------------------
T ss_pred HHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCCCCCCC
Confidence 998865 4568999999997 99999999999999999999999999999999999999999999998864
Q ss_pred C-CCCCCCC
Q 009082 537 P-GGGMDED 544 (544)
Q Consensus 537 ~-~~~~~~~ 544 (544)
| +++||||
T Consensus 559 ~~~~~~~~~ 567 (568)
T 3p9d_H 559 PRPGNWDQE 567 (568)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 4 3599997
No 2
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=1.8e-112 Score=922.80 Aligned_cols=527 Identities=28% Similarity=0.493 Sum_probs=477.8
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHH
Q 009082 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (544)
..+++++....+| ++++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 7 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 85 (543)
T 1a6d_B 7 IFILKEGTKRESG-KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSK 85 (543)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHT
T ss_pred hhhcCCcchhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHH
Confidence 4567888888778 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhc
Q 009082 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (544)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (544)
+|++++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|++++.+ ++..|++.|.++++|+++
T Consensus 86 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~----v~~~~~~~l~~va~tsl~ 161 (543)
T 1a6d_B 86 TQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK----IGADEKALLLKMAQTSLN 161 (543)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE----CCTTHHHHHHHHHHHHHT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999886 244568999999999999
Q ss_pred cccC-CchhhHHHHHHHHHHHhCCC--CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEE
Q 009082 171 SKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (544)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~ 245 (544)
||+. +++++|++++++|+.+++++ +..++|+++|+|++++|+++++|++++|++|++++. .||++++||||++++
T Consensus 162 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 241 (543)
T 1a6d_B 162 SKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLD 241 (543)
T ss_dssp TSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEES
T ss_pred cccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEEe
Confidence 9965 57899999999999999765 333588899999999999999999999999999985 589999999999999
Q ss_pred eeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHH
Q 009082 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 246 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~ 325 (544)
++|++++++.++++.+++++++..+.+.|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|
T Consensus 242 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ 321 (543)
T 1a6d_B 242 APLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDK 321 (543)
T ss_dssp SCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred cccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 326 FCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 326 Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
||++|||+++ +++++++++|+|+.|++..+|+++|++|++|+ .+++|||+|||+|+.+++|+||+++||++++|+++
T Consensus 322 ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~-~~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~ 400 (543)
T 1a6d_B 322 LAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK-NPKAVSILVRGETEHVVDEMERSITDSLHVVASAL 400 (543)
T ss_dssp HHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEES-SSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 89999999999999999999999999999998 48999999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecC
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 483 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~ 483 (544)
++|++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||+.
T Consensus 401 ~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 480 (543)
T 1a6d_B 401 EDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVF 480 (543)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETT
T ss_pred HCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999877778999999
Q ss_pred CCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCCCCCCCCC
Q 009082 484 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQPGGGMDED 544 (544)
Q Consensus 484 ~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~~~~~~~~~~~~ 544 (544)
+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|..+|..++++|++ .+.|||.
T Consensus 481 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~-~~~~~~~ 540 (543)
T 1a6d_B 481 TGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNPPK-SGSSSES 540 (543)
T ss_dssp TTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC--------------------
T ss_pred CCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCC-CCCcccc
Confidence 99999999999999999999999999999999999999999999877777777 5999983
No 3
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=5.7e-111 Score=910.17 Aligned_cols=514 Identities=29% Similarity=0.516 Sum_probs=489.1
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHH
Q 009082 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (544)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~ 91 (544)
.+++++.++.+| .+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++
T Consensus 6 ~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~ 84 (543)
T 3ruv_A 6 GVLPENMKRYMG-RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKT 84 (543)
T ss_dssp CSSCSSEEEEET-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred eeecCCcchhcc-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHH
Confidence 678999988888 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcc
Q 009082 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (544)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~s 171 (544)
|++++||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|+++|
T Consensus 85 qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~d~~~L~~va~tsl~s 160 (543)
T 3ruv_A 85 QEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACE----VGAQDKEILTKIAMTSITG 160 (543)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEE----CCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCC----CCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999886 2556899999999999999
Q ss_pred ccC-CchhhHHHHHHHHHHHhCCC-CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEee
Q 009082 172 KQF-GQEEILCPLIADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (544)
Q Consensus 172 k~~-~~~~~ls~lv~~a~~~~~~~-~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~ 247 (544)
|+. .++++|++++++|+.+++++ +. ||+++|+|+++.|+++.+|++++|++|++++. .||++++||||++++++
T Consensus 161 K~~~~~~~~i~~livdAv~~V~~~~g~--~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~ 238 (543)
T 3ruv_A 161 KGAEKAKEKLAEIIVEAVSAVVDDEGK--VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 238 (543)
T ss_dssp TCGGGCCHHHHHHHHHHHHHHCCTTSC--CCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSC
T ss_pred cccchhHHHHHHHHHHHHHHhhccCCC--cccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEccc
Confidence 964 56889999999999999876 43 89999999999999999999999999999984 58999999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 248 l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
|+++++++++++.+++++++..+.+.|++++++++++|++.|+||||++++|++.+++||.++||++++++++++|+|||
T Consensus 239 Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia 318 (543)
T 3ruv_A 239 IEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLA 318 (543)
T ss_dssp BSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHH
T ss_pred ccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcC
Q 009082 328 RTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 405 (544)
Q Consensus 328 ~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~ 405 (544)
++|||+++ +++++++++|+|+.|++.++|+++|++|++|+ .+..+||+|||+|+.+++|.||+++|||+++|+++++
T Consensus 319 ~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~-~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~ 397 (543)
T 3ruv_A 319 KATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK-HPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIED 397 (543)
T ss_dssp HHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCS-SCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCC-CCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 89999999999999999999999999999997 4889999999999999999999999999999999999
Q ss_pred CeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCCeeeEecCC
Q 009082 406 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHA-SGKTKVGIDLEN 484 (544)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~-~~~~~~gid~~~ 484 (544)
|++|||||++|++|+.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|. +++.++|||+.+
T Consensus 398 g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~ 477 (543)
T 3ruv_A 398 GRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFT 477 (543)
T ss_dssp CEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTT
T ss_pred CCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCC
Confidence 9999999999999999999999889999999999999999999999999999999999999999997 666789999999
Q ss_pred CcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCC
Q 009082 485 GVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRR 533 (544)
Q Consensus 485 ~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~ 533 (544)
|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|.+++.+
T Consensus 478 g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~~~ 526 (543)
T 3ruv_A 478 GAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAPD 526 (543)
T ss_dssp CSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC-------
T ss_pred CccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecCccCCCCC
Confidence 9999999999999999999999999999999999999999999876543
No 4
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=2.2e-111 Score=913.29 Aligned_cols=525 Identities=29% Similarity=0.522 Sum_probs=479.1
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHH
Q 009082 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (544)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 89 (544)
+..+++++.++.+| .+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|
T Consensus 15 ~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a 93 (553)
T 3ko1_A 15 PVIILKEGSSRTYG-KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIA 93 (553)
T ss_dssp -------------C-HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHHH
T ss_pred eEEEEecCcccchh-HHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHHh
Confidence 44668999998888 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhh
Q 009082 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV 169 (544)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l 169 (544)
++|++++||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|++
T Consensus 94 ~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~d~e~L~~vA~tsl 169 (553)
T 3ko1_A 94 KGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQT----VSINDTDLLRKIAMTSL 169 (553)
T ss_dssp HTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEE----CCTTCHHHHHHHHHHHH
T ss_pred hCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999886 25568999999999999
Q ss_pred cccc-CCchhhHHHHHHHHHHHhCCC--CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEE
Q 009082 170 ASKQ-FGQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVF 244 (544)
Q Consensus 170 ~sk~-~~~~~~ls~lv~~a~~~~~~~--~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll 244 (544)
+||+ ..++++|++|+++|+.+++++ +...||+++|+|+++.||++.+|++++|++|++++. .||++++||||+++
T Consensus 170 ~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 249 (553)
T 3ko1_A 170 SSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALI 249 (553)
T ss_dssp TTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEE
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEe
Confidence 9996 456899999999999999875 333589999999999999999999999999999984 58999999999999
Q ss_pred EeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHH
Q 009082 245 AGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (544)
Q Consensus 245 ~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le 324 (544)
+++|+++++++++++.+++++++..+.+.|++++++++++|++.|+||||++++|++.+++||.++||++++++++++|+
T Consensus 250 d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~le 329 (553)
T 3ko1_A 250 DASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLE 329 (553)
T ss_dssp CSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHH
T ss_pred cCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHH
Q 009082 325 RFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 402 (544)
Q Consensus 325 ~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~ 402 (544)
|||++|||+++ +++++++++|+|+.|++.++|+++|++|++|+ .+..+||+|||+|+.+++|.||+++|||+++|++
T Consensus 330 ria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~-~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a 408 (553)
T 3ko1_A 330 KLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAK-NPKSISILIRGGLERLVDETERALRDALGTVADV 408 (553)
T ss_dssp HHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCS-SSSCEEEEECCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCC-CCceEEEeeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999997 4899999999999999999999999999999999
Q ss_pred hcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-CeeeEe
Q 009082 403 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-TKVGID 481 (544)
Q Consensus 403 ~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~-~~~gid 481 (544)
+++|++|||||++|++|+.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++ .++|||
T Consensus 409 v~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d 488 (553)
T 3ko1_A 409 IKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGID 488 (553)
T ss_dssp HHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEE
T ss_pred hhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEE
Confidence 9999999999999999999999999889999999999999999999999999999999999999999987665 789999
Q ss_pred cCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCCCCCCC
Q 009082 482 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQPGGGMD 542 (544)
Q Consensus 482 ~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~~~~~~~~~~ 542 (544)
+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|..++.+|.+ +.|.
T Consensus 489 ~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~~~~~--~~~~ 547 (553)
T 3ko1_A 489 LYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTP--GGAN 547 (553)
T ss_dssp TTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC-----------------
T ss_pred eecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccCCCCCC--Cccc
Confidence 9999999999999999999999999999999999999999999999887765552 5554
No 5
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5.2e-110 Score=900.93 Aligned_cols=503 Identities=28% Similarity=0.477 Sum_probs=476.8
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcC
Q 009082 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (544)
.+.+| .+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 4 ~~~~g-~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~GD 82 (529)
T 3iyg_A 4 DRSTG-EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGD 82 (529)
T ss_pred chhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhCC
Confidence 34466 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-hhhccCCCCCCCCHHHHHHHHHHhhcccc-CCc
Q 009082 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQ 176 (544)
Q Consensus 99 Gttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~ 176 (544)
||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++ ++.+ ++..+++.|.++++|+++||+ .++
T Consensus 83 GTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~----v~~~~~e~l~~va~tsl~sK~~~~~ 158 (529)
T 3iyg_A 83 GTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN----TDELGRDCLINAAKTSMSSKVIGIN 158 (529)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHhccCccccc
Confidence 9999999999999999999999999999999999999999999998 8775 245579999999999999996 456
Q ss_pred hhhHHHHHHHHHHHhCC---CCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecccc
Q 009082 177 EEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 177 ~~~ls~lv~~a~~~~~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~ 251 (544)
+++|++++++|+.++++ ++..+||+++|+|+++.|+++.||++++|++|++++. .||++++||||++++++|+++
T Consensus 159 ~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~ 238 (529)
T 3iyg_A 159 GDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKT 238 (529)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCcccc
Confidence 89999999999999973 3434688889999999999999999999999999874 689999999999999999999
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tG 331 (544)
+++.++++.+++++++..+.+.|++++++++++|++.|+||||++++|++.+++||.++||++++++++++|+|||++||
T Consensus 239 k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tG 318 (529)
T 3iyg_A 239 KMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASG 318 (529)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEe--cCCC------CCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 332 AVAM--LCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 332 a~ii--l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
|+++ ++++ +++++|+|+.|++.++|+++|++|++|+ .+++|||+|||+|+.+++|.||++|||++++|+++
T Consensus 319 a~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~-~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v 397 (529)
T 3iyg_A 319 ATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK-ARTSASVILRGANDFMCDEMERSLHDALCVVKRVL 397 (529)
T ss_pred CeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCC-CCceEEEEECCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 5544 4678999999999999999999999997 48899999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--------
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-------- 475 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~-------- 475 (544)
++|++|||||++|++||.+|++++.+.++++|+++++||+|||.||++|++|||+|+.+++.+|++.|.+++
T Consensus 398 ~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~ 477 (529)
T 3iyg_A 398 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 477 (529)
T ss_pred hCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred CeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 476 TKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 476 ~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|...|
T Consensus 478 ~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~ 529 (529)
T 3iyg_A 478 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 529 (529)
T ss_pred ceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence 6899999999999999999999999999999999999999999999998743
No 6
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=4.5e-110 Score=904.09 Aligned_cols=513 Identities=33% Similarity=0.570 Sum_probs=489.9
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHH
Q 009082 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (544)
..+++++....++ ++++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 9 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 87 (548)
T 1q3q_A 9 VVILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAK 87 (548)
T ss_dssp CCCSCTTCEEEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred cccccCCcceech-HHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHH
Confidence 4567888887777 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhc
Q 009082 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (544)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (544)
+|++++||||||+++||++||+++.+++++|+||+.|++||+.|++.++++|++++.+ ++..|++.|.++++|+++
T Consensus 88 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~d~~~l~~va~tsl~ 163 (548)
T 1q3q_A 88 TQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIR----VDPDDEETLLKIAATSIT 163 (548)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE----CCTTCHHHHHHHHHHHSC
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999886 245679999999999999
Q ss_pred cccC-CchhhHHHHHHHHHHHhCCC--CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEE
Q 009082 171 SKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (544)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~ 245 (544)
||++ +++++|++++++|+.+++++ +..++|++.|+|++++|+++++|++++|++|++++. .||++++||||++++
T Consensus 164 sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 243 (548)
T 1q3q_A 164 GKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALIN 243 (548)
T ss_dssp SSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEEC
T ss_pred ccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEe
Confidence 9965 57899999999999999865 333588889999999999999999999999999985 589999999999999
Q ss_pred eeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHH
Q 009082 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 246 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~ 325 (544)
++|++++++.++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|
T Consensus 244 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ 323 (548)
T 1q3q_A 244 EALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEK 323 (548)
T ss_dssp SCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred cCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 326 FCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 326 Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
||++|||+++ +++++++++|+|+.|++..+|+++|++|++|+ .+++|||+|||+|+.+++|.||+++||++++|+++
T Consensus 324 ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~-~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~ 402 (548)
T 1q3q_A 324 LAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK-NPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM 402 (548)
T ss_dssp HHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCS-SCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCC-CCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 89999999999999999999999999999997 48999999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecC
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 483 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~ 483 (544)
++|++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||..
T Consensus 403 ~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 482 (548)
T 1q3q_A 403 EDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVF 482 (548)
T ss_dssp HSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETT
T ss_pred HCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCC
Confidence 99999999999999999999999888889999999999999999999999999999999999999998766678999999
Q ss_pred CCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCC
Q 009082 484 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAG 529 (544)
Q Consensus 484 ~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~ 529 (544)
+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|..
T Consensus 483 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~ 528 (548)
T 1q3q_A 483 EGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK 528 (548)
T ss_dssp TTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC--
T ss_pred CCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 9999999999999999999999999999999999999999998764
No 7
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=1.8e-110 Score=906.62 Aligned_cols=511 Identities=29% Similarity=0.525 Sum_probs=478.7
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHH
Q 009082 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (544)
..+++++....++ ++++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 8 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 86 (545)
T 1a6d_A 8 ILVLKEGTQREQG-KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSK 86 (545)
T ss_dssp ---------CEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGG
T ss_pred ccccCCcchhhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHH
Confidence 4568999888777 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhc
Q 009082 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (544)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (544)
+|++++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|++++.+ + .+++.|.++++|+++
T Consensus 87 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-----~-~~~~~l~~va~tsl~ 160 (545)
T 1a6d_A 87 AQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-----S-TDDATLRKIALTALS 160 (545)
T ss_dssp CTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-----C-CCHHHHHHHHHHHTT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-----C-CCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999875 3 478999999999999
Q ss_pred cccC-CchhhHHHHHHHHHHHhCCC--CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEE
Q 009082 171 SKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (544)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~ 245 (544)
||++ +++++|++|+++|+.+++++ +..++|++.|+|++++|+++++|++++|++|++++. .||++++||||++++
T Consensus 161 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 240 (545)
T 1a6d_A 161 GKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALID 240 (545)
T ss_dssp TSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEEC
T ss_pred cccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEe
Confidence 9965 57899999999999999765 223588889999999999999999999999999985 589999999999999
Q ss_pred eeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHH
Q 009082 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (544)
Q Consensus 246 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~ 325 (544)
++|++++++.++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|
T Consensus 241 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ 320 (545)
T 1a6d_A 241 SALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEK 320 (545)
T ss_dssp SCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHH
T ss_pred cCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHh
Q 009082 326 FCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 403 (544)
Q Consensus 326 Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~ 403 (544)
||++|||+++ +++++++++|+|+.|++.++|+++|++|++|+ .++++||+|||+|+.+++|.||+++||++++|+++
T Consensus 321 ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~-~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~ 399 (545)
T 1a6d_A 321 LAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK-NPKAVSILIRGGTDHVVSEVERALNDAIRVVAITK 399 (545)
T ss_dssp HHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEES-CSSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCC-CCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999997 48999999999999999999999999999999999
Q ss_pred cCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecC
Q 009082 404 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 483 (544)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~ 483 (544)
++|++|||||++|++|+.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||..
T Consensus 400 ~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 479 (545)
T 1a6d_A 400 EDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLD 479 (545)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETT
T ss_pred hCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecc
Confidence 99999999999999999999999988899999999999999999999999999999999999999999877778999999
Q ss_pred CCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCC
Q 009082 484 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAG 529 (544)
Q Consensus 484 ~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~ 529 (544)
+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|..+|..
T Consensus 480 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 525 (545)
T 1a6d_A 480 NNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKST 525 (545)
T ss_dssp TTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred cCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999999999998875
No 8
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5.1e-109 Score=890.80 Aligned_cols=508 Identities=51% Similarity=0.861 Sum_probs=485.6
Q ss_pred cccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhh
Q 009082 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (544)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (544)
|++++.+|.++++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+++
T Consensus 1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (512)
T 3iyg_Q 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80 (512)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence 46778788669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCC
Q 009082 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFG 175 (544)
Q Consensus 96 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~ 175 (544)
+||||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|+++++... .+..|++.|.++++|+++||+.+
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~--~~~~~~~~l~~va~tsl~sK~~~ 158 (512)
T 3iyg_Q 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSA--KNLRDVDEVSSLLHTSVMSKQYG 158 (512)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999999999999999999999999865211 25678999999999999999767
Q ss_pred chhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCcccccCceEEEEEeecccccccc
Q 009082 176 QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255 (544)
Q Consensus 176 ~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~~~n~kIlll~~~l~~~~~~~ 255 (544)
++++|++++++|+.++++++ ..+++++|+|.|++||++.+|++++|++|++++.+||++++|+||+++++||++.+++.
T Consensus 159 ~~~~i~~livdAv~~V~~~~-~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~~~~~~~n~kI~ll~~~le~~~~e~ 237 (512)
T 3iyg_Q 159 NEVFLAKLIAQACVSIFPDS-GHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237 (512)
T ss_pred chHHHHHHHHHHHHHHhccC-CcccHhHeeEeeccCCCcccceEEeeEEEecCcCCCCcccccCceEEEecccccccccc
Confidence 78999999999999998652 24899999999999999999999999999999988999999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe
Q 009082 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (544)
Q Consensus 256 ~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii 335 (544)
++++.+++++++..+.+.|++++++++++|++.|++|||++++|++++++||+++||++++++++.+|+|||++|||+++
T Consensus 238 k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa~ii 317 (512)
T 3iyg_Q 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATAL 317 (512)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCC
Q 009082 336 --LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAA 413 (544)
Q Consensus 336 --l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG 413 (544)
+++++++++|+|+.|++.++|+++|++|++|+..+++|||+|||+|+.+++|.||+++|||+++|+++++|++|||||
T Consensus 318 s~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGG 397 (512)
T 3iyg_Q 318 PRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGG 397 (512)
T ss_pred cccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCc
Confidence 999999999999999999999999999999964578999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCC--cccccc
Q 009082 414 ATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG--VCADIS 491 (544)
Q Consensus 414 ~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~--~i~d~~ 491 (544)
++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||..+| ++.||+
T Consensus 398 a~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~ 477 (512)
T 3iyg_Q 398 ATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 477 (512)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchH
Confidence 999999999999998899999999999999999999999999999999999999999988778999999965 999999
Q ss_pred cCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 492 TMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 492 ~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
+.|||||+.||+++|+.|+|+|++|||||++|.++
T Consensus 478 ~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~k 512 (512)
T 3iyg_Q 478 EAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 512 (512)
T ss_pred hccCeEcHHHHHHHHHHHHHHHHHHHhHhHheecC
Confidence 99999999999999999999999999999999764
No 9
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.9e-109 Score=891.52 Aligned_cols=502 Identities=26% Similarity=0.443 Sum_probs=479.8
Q ss_pred ccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhh
Q 009082 15 KEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQE 94 (544)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~ 94 (544)
++++++.+| .+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++
T Consensus 1 ~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~ 79 (515)
T 3iyg_H 1 KEGTDSSQG-IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDA 79 (515)
T ss_pred CCCccccCc-HHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhc
Confidence 467777788 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC----HHHHHHHHHHhhc
Q 009082 95 EIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN----TEEVIYRMKAAVA 170 (544)
Q Consensus 95 ~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~----~~~l~~i~~t~l~ 170 (544)
++||||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+. +..+ ++.|.++++|+++
T Consensus 80 ~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v----~~~~~~~~~~~L~~va~tsl~ 155 (515)
T 3iyg_H 80 EVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV----KKEDKVEQRKLLEKCAMTALS 155 (515)
T ss_pred eeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccc----ccCChHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998862 3344 6788999999999
Q ss_pred ccc-CCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-----CCcccccCceEEEE
Q 009082 171 SKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVF 244 (544)
Q Consensus 171 sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-----~~~~~~~n~kIlll 244 (544)
||+ +.++++|++++++|+.+++. ++|++.|+|+++.||++.+|++++|++|++++. ++|++++||||+++
T Consensus 156 sK~~s~~~~~i~~livdAv~~V~~----~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~ 231 (515)
T 3iyg_H 156 SKLISQQKAFFAKMVVDAVMMLDD----LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 231 (515)
T ss_pred CCcccccHHHHHHHHHHHHHHhcc----cCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEE
Confidence 995 56789999999999999963 388889999999999999999999999999875 35889999999999
Q ss_pred EeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHH
Q 009082 245 AGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (544)
Q Consensus 245 ~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le 324 (544)
+++|++++++.++++.+++++++..+.+.|++++++++++|++.|++|||++++|++++++||+++||++++++++++|+
T Consensus 232 ~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~le 311 (515)
T 3iyg_H 232 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 311 (515)
T ss_pred cccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHH
Q 009082 325 RFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 402 (544)
Q Consensus 325 ~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~ 402 (544)
|||++|||+++ +++++++++|+|+.|++.++|+++|++|++|+ .++.|||+|||+|+.+++|.||+++|||+++|++
T Consensus 312 ria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~-~~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~ 390 (515)
T 3iyg_H 312 RTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCP-KAKTCTIILRGGAEQFMEETERSLHDAIMIVRRA 390 (515)
T ss_pred HHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCC-CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999997 4899999999999999999999999999999999
Q ss_pred hcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEec
Q 009082 403 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDL 482 (544)
Q Consensus 403 ~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~ 482 (544)
++++++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||+
T Consensus 391 v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~ 470 (515)
T 3iyg_H 391 IKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDI 470 (515)
T ss_pred hhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeC
Confidence 99988999999999999999999998899999999999999999999999999999999999999999987777899999
Q ss_pred CCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 483 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 483 ~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+.
T Consensus 471 ~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~ 514 (515)
T 3iyg_H 471 NTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNP 514 (515)
T ss_pred CCCcccccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999753
No 10
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=8.6e-109 Score=888.73 Aligned_cols=502 Identities=26% Similarity=0.491 Sum_probs=476.7
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcC
Q 009082 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (544)
.+.+| .+++..|+.||+.|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 3 ~~~~g-~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 81 (515)
T 3iyg_G 3 KRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGD 81 (515)
T ss_pred cccch-HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhCC
Confidence 45567 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCch
Q 009082 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQE 177 (544)
Q Consensus 99 Gttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~ 177 (544)
||||+||||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|++++|. ..+.
T Consensus 82 GTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~~~l~~va~tsl~sK~i~~~~ 157 (515)
T 3iyg_G 82 GTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIP----VDTSNRDTMLNIINSSITTKVISRWS 157 (515)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcc----cCCCCHHHHHHHHHHHhcCCchhhHH
Confidence 99999999999999999999999999999999999999999999999876 356678999999999999995 4578
Q ss_pred hhHHHHHHHHHHHhCCC--CCCcccchh-hhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccc
Q 009082 178 EILCPLIADACIQVCPK--NPANFNVDN-VRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSA 252 (544)
Q Consensus 178 ~~ls~lv~~a~~~~~~~--~~~~~~~~~-I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~ 252 (544)
+++++++++|+..+.++ +..++|+++ |+|++++||+++||++++|++|++++. .||++++||||++++++|++++
T Consensus 158 ~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k 237 (515)
T 3iyg_G 158 SLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK 237 (515)
T ss_pred HHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEcccccccc
Confidence 88999999999998732 223467764 899999999999999999999999985 5899999999999999999999
Q ss_pred cccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009082 253 TETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (544)
Q Consensus 253 ~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa 332 (544)
++.++++.+++++++..+.+.|++++++++++|++.|++|||++++|++++++||.++||++++++++++|+|||++|||
T Consensus 238 ~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tGa 317 (515)
T 3iyg_G 238 GESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGA 317 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEe--cCCCCCCCCcc-ceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEE
Q 009082 333 VAM--LCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIV 409 (544)
Q Consensus 333 ~ii--l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vv 409 (544)
+++ +++++++++|+ |+.|++.++|+++|++|++|+ .++.|||+|||+|+.+++|.||+++|||+++|++++++++|
T Consensus 318 ~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~-~~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~iv 396 (515)
T 3iyg_G 318 RIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECK-DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLV 396 (515)
T ss_pred eeeccccccChhhcCCcccEEEEEEECCceEEEEeCCC-CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEE
Confidence 999 99999999999 999999999999999999998 48999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCeeeEecCCCccc
Q 009082 410 PGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDLENGVCA 488 (544)
Q Consensus 410 pGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~-~~~~gid~~~~~i~ 488 (544)
||||++|++++.+|++++.+.++++|+++++||+|||.||++|++|||+|+.+++.+|++.|.++ +.++|+|+.+|++.
T Consensus 397 pGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~ 476 (515)
T 3iyg_G 397 PGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLV 476 (515)
T ss_pred eCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999753 45789999999999
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 489 DISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 489 d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
||++.|||||+.+|+++|+.|+|+|++|||||++|...
T Consensus 477 d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 514 (515)
T 3iyg_G 477 DMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGH 514 (515)
T ss_pred ccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence 99999999999999999999999999999999999753
No 11
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=2.1e-108 Score=885.28 Aligned_cols=502 Identities=26% Similarity=0.434 Sum_probs=478.7
Q ss_pred cccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCC--CCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhh
Q 009082 18 HKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL--DKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (544)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~--g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (544)
+.+.+| .+++..|+.||+.|+++|+|||||+||+|||+++. |+++|||||+|||++|+++||.|+|++++|++|+++
T Consensus 3 ~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e 81 (513)
T 3iyg_B 3 ADEERA-ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 81 (513)
T ss_pred cchhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhh
Confidence 344566 59999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCHHHHHHHHHHhhccccC
Q 009082 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVASKQF 174 (544)
Q Consensus 96 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~-~~~~~l~~i~~t~l~sk~~ 174 (544)
+||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+.-. +. .+++.|.++++|+++||+.
T Consensus 82 ~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~--~~~~~~~~l~~va~tslssK~~ 159 (513)
T 3iyg_B 82 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGS--DEVKFRQDLMNIAGTTLSSKLL 159 (513)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCccc--ccccCHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999886211 11 2688999999999999964
Q ss_pred -CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-CCcccccCceEEEEEeeccccc
Q 009082 175 -GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGVDTSA 252 (544)
Q Consensus 175 -~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-~~~~~~~n~kIlll~~~l~~~~ 252 (544)
+++++|++++++|+.+++++ +|++.|+|+++.||++.||++++|++|++++. .||++++||||++++++|++++
T Consensus 160 ~~~~~~i~~livdAv~~V~~~----~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~m~~~~en~kIll~~~~Le~~k 235 (513)
T 3iyg_B 160 THHKDHFTKLAVEAVLRLKGS----GNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDK 235 (513)
T ss_pred ccchHHHHHHHHHHHHHhccc----CCcCeEEEEEeCCCCccceeEEeeEEEeccccCCCceeecCceEEEEcCCccccc
Confidence 57889999999999999753 78889999999999999999999999999883 5999999999999999999999
Q ss_pred cc-cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009082 253 TE-TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (544)
Q Consensus 253 ~~-~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tG 331 (544)
++ .++++.+++++++..+.+.|++++++++++|++.|++|||++++|++.+++||.++||++++++++.+|+|||++||
T Consensus 236 ~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tG 315 (513)
T 3iyg_B 236 IKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTG 315 (513)
T ss_pred ccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhC
Confidence 99 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEE
Q 009082 332 AVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIV 409 (544)
Q Consensus 332 a~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vv 409 (544)
|+++ +++++++++|+|+.|++..+|+++|++|++|++ +++|||+|||+|+.+++|.||+++||++++|++++++++|
T Consensus 316 a~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iV 394 (513)
T 3iyg_B 316 GEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTV 394 (513)
T ss_pred CEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999 899999999999999999999999999999974 8899999999999999999999999999999999998899
Q ss_pred eCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccc
Q 009082 410 PGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCAD 489 (544)
Q Consensus 410 pGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d 489 (544)
||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.|
T Consensus 395 pGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d 474 (513)
T 3iyg_B 395 YGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGD 474 (513)
T ss_pred eCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccc
Confidence 99999999999999999988999999999999999999999999999999999999999999887788999999999999
Q ss_pred cccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 490 ISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 490 ~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
|++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 475 ~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 512 (513)
T 3iyg_B 475 MSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 512 (513)
T ss_pred hHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998865
No 12
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2e-108 Score=886.40 Aligned_cols=502 Identities=28% Similarity=0.520 Sum_probs=479.8
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCC
Q 009082 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (544)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (544)
+.+| .+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|||
T Consensus 6 ~~~g-~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~GDG 84 (518)
T 3iyg_D 6 RDKP-AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDG 84 (518)
T ss_pred chhh-HHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhCCC
Confidence 3456 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc-CCchh
Q 009082 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEE 178 (544)
Q Consensus 100 ttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~ 178 (544)
|||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+ ++..+++.|.++++|+++||+ +.+++
T Consensus 85 TTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~~~l~~vA~tsl~sK~~~~~~~ 160 (518)
T 3iyg_D 85 TTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRP----VELSDRETLLNSAATSLNSKVVSQYSS 160 (518)
T ss_pred ceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheee----CCCCChHHHHHHhHhhhccccchhhHH
Confidence 9999999999999999999999999999999999999999999999886 355689999999999999995 46788
Q ss_pred hHHHHHHHHHHHhCCC-CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-CCcccccCceEEEEEeeccccccccc
Q 009082 179 ILCPLIADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGVDTSATETK 256 (544)
Q Consensus 179 ~ls~lv~~a~~~~~~~-~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-~~~~~~~n~kIlll~~~l~~~~~~~~ 256 (544)
+|++++++|+.++++. +...+|+++|+|+++.||+..+|++++|++|++++. +||++++||||++++++|++++++++
T Consensus 161 ~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~~mp~~i~n~kIlll~~~Le~~k~~~~ 240 (518)
T 3iyg_D 161 LLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMD 240 (518)
T ss_pred HHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEecccccCCCccccCceEEEEEeeccccccccC
Confidence 9999999999999752 123489999999999999999999999999999987 69999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEe-----CCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009082 257 GTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVS-----GAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (544)
Q Consensus 257 ~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~-----~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tG 331 (544)
.++.+++++++..+.+.|++++++++++|++.|+||||+ +++|++.+++||.++||++++++++.+|+|||++||
T Consensus 241 ~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~tG 320 (518)
T 3iyg_D 241 NQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIG 320 (518)
T ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred CeEe--cCCCCCCCCccceeEEEEEECC-eEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeE
Q 009082 332 AVAM--LCQPNPDDLGYVDSVSVEEIGG-ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 408 (544)
Q Consensus 332 a~ii--l~~l~~~~lG~~~~v~~~~ig~-~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~v 408 (544)
|+++ +++++++++|+|+.|++.++|+ ++|++|++|++.+++|||+|||+|+.+++|.||+++||++++|+++++|++
T Consensus 321 a~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~i 400 (518)
T 3iyg_D 321 TKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRAL 400 (518)
T ss_pred CEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 9999 8999999999999999999999 899999999744899999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCccc
Q 009082 409 VPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCA 488 (544)
Q Consensus 409 vpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~ 488 (544)
|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||+.+|++.
T Consensus 401 VpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~ 480 (518)
T 3iyg_D 401 IAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGIS 480 (518)
T ss_pred eecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCccc
Confidence 99999999999999999998899999999999999999999999999999999999999999987777899999999999
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 489 DISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 489 d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
||++.|||||+.+|+++|+.|+|+|++|||||++|.++
T Consensus 481 d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 518 (518)
T 3iyg_D 481 NILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 518 (518)
T ss_pred chhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEecC
Confidence 99999999999999999999999999999999999864
No 13
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=3.5e-110 Score=904.34 Aligned_cols=515 Identities=26% Similarity=0.433 Sum_probs=482.3
Q ss_pred cccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHH
Q 009082 8 YGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVL 87 (544)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~ 87 (544)
+++..++++++++.+| .+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++
T Consensus 7 ~~~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e 85 (550)
T 3p9d_G 7 TPTIVVLKEGTDASQG-KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVD 85 (550)
T ss_dssp ---------CCCEEES-HHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHH
T ss_pred CcchhhhcCCcchhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHH
Confidence 3567788999999889 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC---HHHHHHH
Q 009082 88 AGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN---TEEVIYR 164 (544)
Q Consensus 88 ~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~---~~~l~~i 164 (544)
+|++|++++||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ + +..| ++.|.++
T Consensus 86 ~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-v---~~~~~~~~~~L~~v 161 (550)
T 3p9d_G 86 ISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVD-I---TSEKSSGRELLERC 161 (550)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEEC-C---CCC------CHHHH
T ss_pred HHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc-C---CCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886 2 3344 7889999
Q ss_pred HHHhhcccc-CCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC-----CCcccccC
Q 009082 165 MKAAVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEK 238 (544)
Q Consensus 165 ~~t~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~-----~~~~~~~n 238 (544)
++|+++||+ +.++++|++|++||+.+++++ ++|+++|+|++++|++++||++++|++|++++. +||++++|
T Consensus 162 A~tsl~sK~~~~~~~~i~~livdAv~~V~~~---~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en 238 (550)
T 3p9d_G 162 ARTAMSSKLIHNNADFFVKMCVDAVLSLDRN---DLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNN 238 (550)
T ss_dssp HHHHHHHTTTGGGHHHHHHHHHHHHHHCCSS---SCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSS
T ss_pred HHHhccCccccccHhHHHHHHHHHHHHhCcc---ccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccC
Confidence 999999995 567899999999999999752 489999999999999999999999999999874 68999999
Q ss_pred ceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEec
Q 009082 239 AKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS 318 (544)
Q Consensus 239 ~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v 318 (544)
|||++++++|++++++.++++.+++++++..+.+.|++++++++++|++.|++||+++++|++++++||+++||++++++
T Consensus 239 ~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v 318 (550)
T 3p9d_G 239 PKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRV 318 (550)
T ss_dssp CCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECC
T ss_pred ceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHH
Q 009082 319 SKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGV 396 (544)
Q Consensus 319 ~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal 396 (544)
++++|+|||++|||+++ +++++++.+|+|+.|++.++|+++|++|++|+ .+++|||+|||+|+.+++|.||+++|||
T Consensus 319 ~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~-~~~~~tI~lrG~te~~l~E~kr~l~DAl 397 (550)
T 3p9d_G 319 SADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCP-QAKTCTLLLRGGAEQVIAEVERSLHDAI 397 (550)
T ss_dssp CTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCT-TCCCCCCCBCSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCC-CCceeEEEEeCCcHHHHHHHHHHHHhHH
Confidence 99999999999999999 89999999999999999999999999999997 4889999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 009082 397 NTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKT 476 (544)
Q Consensus 397 ~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~ 476 (544)
+++|+++++|++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.
T Consensus 398 ~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~ 477 (550)
T 3p9d_G 398 MIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEK 477 (550)
T ss_dssp HHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999977777
Q ss_pred eeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCC
Q 009082 477 KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGP 531 (544)
Q Consensus 477 ~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~ 531 (544)
++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|..+|....
T Consensus 478 ~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~ 532 (550)
T 3p9d_G 478 WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESA 532 (550)
T ss_dssp CCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC--
T ss_pred ceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCcccc
Confidence 8999999999999999999999999999999999999999999999999887433
No 14
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=1.6e-108 Score=892.93 Aligned_cols=509 Identities=30% Similarity=0.469 Sum_probs=482.7
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Q 009082 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQ 93 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~ 93 (544)
++++....+| .+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+
T Consensus 13 ~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd 91 (559)
T 3p9d_A 13 LFLGGEKISG-DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQD 91 (559)
T ss_dssp CCSSCEEEET-HHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred hhccccccch-HHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5777777778 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-hhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 94 EEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 94 ~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
+++||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++ ++.+ + +..+++.|.++++|+++||
T Consensus 92 ~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~-v---~~~~~e~L~~vA~tsl~sK 167 (559)
T 3p9d_A 92 REIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTS-V---DTLGKETLINIAKTSMSSK 167 (559)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGG-S---CC--CTTHHHHHHHTTSSS
T ss_pred HHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC-C---CCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999 8876 2 4456788999999999999
Q ss_pred c-CCchhhHHHHHHHHHHHhCC---CCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCccccc--CceEEEE
Q 009082 173 Q-FGQEEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNME--KAKVAVF 244 (544)
Q Consensus 173 ~-~~~~~~ls~lv~~a~~~~~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~--n~kIlll 244 (544)
+ ..++++|++|+++|+.++++ ++...+++++|+|++++|+++++|++++|++|++++. .||++++ ||||+++
T Consensus 168 ~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~ 247 (559)
T 3p9d_A 168 IIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACL 247 (559)
T ss_dssp GGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEECSSSBCEEEE
T ss_pred cccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceeeccCCceEEEE
Confidence 5 56789999999999999984 1123589999999999999999999999999999874 5899999 9999999
Q ss_pred EeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHH
Q 009082 245 AGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (544)
Q Consensus 245 ~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le 324 (544)
+++|++.+++.++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||++|+++++.+|+
T Consensus 248 ~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av~~~~k~~le 327 (559)
T 3p9d_A 248 DLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLR 327 (559)
T ss_dssp TTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEESSCCHHHHH
T ss_pred eccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceEccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEe--c------CCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHH
Q 009082 325 RFCRTTGAVAM--L------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGV 396 (544)
Q Consensus 325 ~Ia~~tGa~ii--l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal 396 (544)
|||++|||+++ + ++++++++|+|+.|++..+++++|++|++|+ .+++|||+|||+|+.+++|.||+++|||
T Consensus 328 ~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~-~~~~~tI~lrG~te~~l~E~kr~l~DAL 406 (559)
T 3p9d_A 328 RIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTS-KHSSSSIILRGANDYSLDEMERSLHDSL 406 (559)
T ss_dssp HHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEES-SSCCCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCC-CCCEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 99999999999 5 6888999999999999999999999999997 4899999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 009082 397 NTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKT 476 (544)
Q Consensus 397 ~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~ 476 (544)
+++|+++++|++|||||++|++|+.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.
T Consensus 407 ~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~ 486 (559)
T 3p9d_A 407 SVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQM 486 (559)
T ss_dssp HHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999976554
Q ss_pred ------------eeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCC
Q 009082 477 ------------KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 528 (544)
Q Consensus 477 ------------~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~ 528 (544)
++|||+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|.
T Consensus 487 ~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 550 (559)
T 3p9d_A 487 AKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPE 550 (559)
T ss_dssp CC----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCC
T ss_pred ccccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCc
Confidence 7999999999999999999999999999999999999999999999998765
No 15
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=6.5e-107 Score=874.94 Aligned_cols=503 Identities=27% Similarity=0.449 Sum_probs=477.8
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcC
Q 009082 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (544)
.+.+| .+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 4 ~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 4 SRLMG-LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred hhhch-HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 34466 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccC-Cch
Q 009082 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQE 177 (544)
Q Consensus 99 Gttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~ 177 (544)
||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+.. .+..|++.|.++++|++++|.. .+.
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~~~~~~~l~~vA~tsl~sK~i~~~~ 160 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVL--VDMKNTEPLIQTAKTTLGSKVVNSCH 160 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecC--CCccCHHHHHHHHHHHhcccchhHHH
Confidence 9999999999999999999999999999999999999999999999987621 1335689999999999999954 468
Q ss_pred hhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecccccccc
Q 009082 178 EILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATET 255 (544)
Q Consensus 178 ~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~ 255 (544)
++|+++++||+..+.+....++|+++|+|++++||++.+|++++|++|++++. .||+.++|+||++++|||++.+++.
T Consensus 161 ~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~ 240 (515)
T 3iyg_E 161 RQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240 (515)
T ss_pred HHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccCCCceEEEEcCccccccccc
Confidence 99999999999999764333588899999999999999999999999999985 5899999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe
Q 009082 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (544)
Q Consensus 256 ~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii 335 (544)
++++.+++++++..+.+.|+++++++++++.+.|++|||++++|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus 241 ~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~ii 320 (515)
T 3iyg_E 241 KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIV 320 (515)
T ss_pred cceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cCCCCCCCCccceeEEEEEECC--eEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeC
Q 009082 336 --LCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPG 411 (544)
Q Consensus 336 --l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpG 411 (544)
+++++++++|+|+.|++.++|+ ++|++|++|+ .++.+||+|||+|+.+++|.||+++|||+++|+++++|++|||
T Consensus 321 ~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~-~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpG 399 (515)
T 3iyg_E 321 PRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCK-NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYG 399 (515)
T ss_pred cccccCCHHHCCcceEEEEEEeccccceEEEEEcCC-CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 9999999999999999999997 8999999998 4889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCeeeEecCCCccccc
Q 009082 412 AAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDLENGVCADI 490 (544)
Q Consensus 412 GG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~-~~~~~gid~~~~~i~d~ 490 (544)
||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+ ++.++|+|+.+|++.||
T Consensus 400 GGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~ 479 (515)
T 3iyg_E 400 GGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDM 479 (515)
T ss_pred CcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccch
Confidence 99999999999999998899999999999999999999999999999999999999999975 45789999999999999
Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHhchhhhhcc
Q 009082 491 STMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 525 (544)
Q Consensus 491 ~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~ 525 (544)
++.|||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 480 ~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 514 (515)
T 3iyg_E 480 KHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514 (515)
T ss_pred HhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 99999999999999999999999999999999975
No 16
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=8e-109 Score=890.62 Aligned_cols=508 Identities=25% Similarity=0.474 Sum_probs=482.9
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Q 009082 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQ 93 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~ 93 (544)
++.+....+| .+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+
T Consensus 8 ~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd 86 (528)
T 3p9d_D 8 NATFKNKEKP-QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQD 86 (528)
T ss_dssp CCSSCBCCCH-HHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred ccccchhcch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhh
Confidence 4555555566 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhcccc
Q 009082 94 EEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ 173 (544)
Q Consensus 94 ~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~ 173 (544)
+++||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++.| ++..|++.|.++++|+++||+
T Consensus 87 ~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~e~l~~va~tsl~sK~ 162 (528)
T 3p9d_D 87 SEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHK----VSLSDREQLVRAASTSLSSKI 162 (528)
T ss_dssp HHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCC----CCSCCHHHHHHHHHHHSCSSS
T ss_pred hhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCC----CCCCCHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999876 355689999999999999995
Q ss_pred -CCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--C-CcccccCceEEEEEeecc
Q 009082 174 -FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--G-SIKNMEKAKVAVFAGGVD 249 (544)
Q Consensus 174 -~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~-~~~~~~n~kIlll~~~l~ 249 (544)
..++++|++|+++|+.++++.....+++++|+|++++||+++||++++|++|++++. . ||++++||||++++++|+
T Consensus 163 ~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien~kIll~~~~le 242 (528)
T 3p9d_D 163 VSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQIS 242 (528)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSEESSEEEEEECCCSS
T ss_pred cchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcccccCceEEEEecccc
Confidence 567899999999999999863223599999999999999999999999999999984 3 899999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc-----ChHHHHHHHHCCeEEEEecCHHHHH
Q 009082 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELR 324 (544)
Q Consensus 250 ~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i-----~~~~l~~l~~~~I~vv~~v~~~~le 324 (544)
+.+++.++++.+++++++..+.++|++++++++++|++.|+||||++++| ++.+++||.++||++++++++++|+
T Consensus 243 ~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le 322 (528)
T 3p9d_D 243 PPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIE 322 (528)
T ss_dssp CCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHH
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecC--CCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHH
Q 009082 325 RFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG--GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYK 400 (544)
Q Consensus 325 ~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~--~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~ 400 (544)
|||++|||+++ +++++++++|+|+.|++..+|+++|++|++|+ +.+++|||+|||+|+.+++|.||+++||++++|
T Consensus 323 ~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r 402 (528)
T 3p9d_D 323 FLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIR 402 (528)
T ss_dssp HHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999986 226899999999999999999999999999999
Q ss_pred HHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeE
Q 009082 401 AMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGI 480 (544)
Q Consensus 401 ~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gi 480 (544)
+++++|++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++||
T Consensus 403 ~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~ 482 (528)
T 3p9d_D 403 CLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGI 482 (528)
T ss_dssp HHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCC
T ss_pred HHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccce
Confidence 99999999999999999999999999888899999999999999999999999999999999999999998777788999
Q ss_pred ecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccC
Q 009082 481 DLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526 (544)
Q Consensus 481 d~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~ 526 (544)
|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.++
T Consensus 483 d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 528 (528)
T 3p9d_D 483 SVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR 528 (528)
T ss_dssp CSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBCC
T ss_pred ecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheecC
Confidence 9999999999999999999999999999999999999999999864
No 17
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5.5e-107 Score=874.19 Aligned_cols=495 Identities=25% Similarity=0.434 Sum_probs=473.8
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCch
Q 009082 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (544)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (544)
++ .+++..|+.||+.|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|||||
T Consensus 7 ~~-~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GDGTT 85 (517)
T 3iyg_Z 7 RA-QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTT 85 (517)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCCce
Confidence 45 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccC-CchhhH
Q 009082 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEIL 180 (544)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~l 180 (544)
|+++||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ + +. +++.|.++++|+++||+. .+.++|
T Consensus 86 tvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-v---~~-~~~~L~~va~tsl~sKi~~~~~d~l 160 (517)
T 3iyg_Z 86 SNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVS-K---EM-DRETLIDVARTSLRTKVHAELADVL 160 (517)
T ss_pred eHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcC-C---CC-CHHHHHHHHHHHhccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999876 2 32 789999999999999964 468999
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccccccceE
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGT 258 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~ 258 (544)
+++++||+..+.+.+ ..+|+++|+|++++||+..||++++|++|++++. .||++++||||++++++|++++++.+++
T Consensus 161 a~l~vdaV~~V~~~~-~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~ 239 (517)
T 3iyg_Z 161 TEAVVDSILAIKKQD-EPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSG 239 (517)
T ss_pred HHHHHHHhheeccCC-CcCChhHheeeeecCCCccccceEeeEEEeccCCCCCccccccCCeEEEeccccccccccccee
Confidence 999999999986543 3589999999999999999999999999999884 5899999999999999999999999999
Q ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------EEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009082 259 VLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE---------VIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (544)
Q Consensus 259 ~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~---------lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~ 329 (544)
+.++++++++.+.+.|++++++.+++|+..+++ |||++++|++.+++||.++||++++++++++|+|||++
T Consensus 240 ~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~ 319 (517)
T 3iyg_Z 240 FFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLA 319 (517)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHHH
Confidence 999999999999999999999999999998877 58999999999999999999999999999999999999
Q ss_pred hCCeEe--cCCCCCCC-CccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCC
Q 009082 330 TGAVAM--LCQPNPDD-LGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 406 (544)
Q Consensus 330 tGa~ii--l~~l~~~~-lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~ 406 (544)
|||+++ ++++++++ +|+|+ |++..+|+++|++|++|+ .++.+||+|||+|+.+++|.||+++||++++|+++++|
T Consensus 320 tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~-~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~ 397 (517)
T 3iyg_Z 320 CGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCN-NPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDG 397 (517)
T ss_pred hCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCC-CchhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999 99999999 99999 999999999999999997 48899999999999999999999999999999999999
Q ss_pred eEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCc
Q 009082 407 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 486 (544)
Q Consensus 407 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~ 486 (544)
++|||||++|++++.+|++++.+.++++|+++++||+|||.+|++|++|||+|+.+++.+|++.|.+++.++|||+.+|+
T Consensus 398 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~ 477 (517)
T 3iyg_Z 398 CVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGE 477 (517)
T ss_pred eEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCCc
Confidence 99999999999999999999988999999999999999999999999999999999999999999877788999999999
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhcc
Q 009082 487 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 525 (544)
Q Consensus 487 i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~ 525 (544)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 478 ~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 516 (517)
T 3iyg_Z 478 PMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA 516 (517)
T ss_pred ccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999975
No 18
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=1.4e-107 Score=885.33 Aligned_cols=512 Identities=28% Similarity=0.479 Sum_probs=480.6
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHH
Q 009082 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (544)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 89 (544)
+..+++++..+.+| .+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|
T Consensus 4 ~~~~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~a 82 (590)
T 3p9d_C 4 PVVFMNASQERTTG-RQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELS 82 (590)
T ss_dssp --CCSCTTCCBCTT-HHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHHT
T ss_pred CeEeecCCcchhhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHHH
Confidence 45678999988888 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCchhHHHHHHHHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHh
Q 009082 90 KAQQEEIGDGANLTISFAGEILQGAEEL-IRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAA 168 (544)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~~~~l-i~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~ 168 (544)
++|++++||||||++|||++||+++.++ +.+|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|+
T Consensus 83 ~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~e~L~~vA~ts 158 (590)
T 3p9d_C 83 RTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKP----VDVENDAAMKKLIQAS 158 (590)
T ss_dssp TTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCT----TTTCCTHHHHHHHTTT
T ss_pred HhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhc----cccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999875 3556789999999999
Q ss_pred hcccc-CCchhhHHHHHHHHHHHhCCCCCC--------cccch-hhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccc
Q 009082 169 VASKQ-FGQEEILCPLIADACIQVCPKNPA--------NFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM 236 (544)
Q Consensus 169 l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~--------~~~~~-~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~ 236 (544)
++||+ .+++++|++|+++|+.++++++.. ++|++ +|+|++++||++.||++++|++|++++. .||+++
T Consensus 159 lsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m~~~~ 238 (590)
T 3p9d_C 159 IGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHI 238 (590)
T ss_dssp STTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTTSCSCE
T ss_pred HhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCCCCccee
Confidence 99995 467899999999999999875421 24554 6999999999999999999999999874 589999
Q ss_pred cCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEE
Q 009082 237 EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK 316 (544)
Q Consensus 237 ~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~ 316 (544)
+||||++++++|++++++.++++.+++++++..+.+.|++++++++++|++.|++|||++++|++++++||.++||++|+
T Consensus 239 en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av~ 318 (590)
T 3p9d_C 239 ENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLR 318 (590)
T ss_dssp ESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCCC
T ss_pred eeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhCCeEe--cCCCCCCCCcc-ceeEEEEEECCeEEEEEEecCCCcce---------------------
Q 009082 317 ISSKFELRRFCRTTGAVAM--LCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSV--------------------- 372 (544)
Q Consensus 317 ~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~--------------------- 372 (544)
++++.+|+|||++|||+++ +++++++++|+ |+.|++..+|++++++|++|++ +..
T Consensus 319 ~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~-~~~~~~~~~~~~~~~~~k~~~~~~ 397 (590)
T 3p9d_C 319 RVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKE-PGSGSGWSHPQFEKGSGKRRWKKN 397 (590)
T ss_dssp CCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC----------------------------
T ss_pred cCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCC-ccccccccccccccccchhhhhcc
Confidence 9999999999999999999 99999999999 9999999999999999999863 444
Q ss_pred -----------------------------------EEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHH
Q 009082 373 -----------------------------------STVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEI 417 (544)
Q Consensus 373 -----------------------------------~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~ 417 (544)
+||+|||+|+.+++|.||+++|||+++|+++++|++|||||++|+
T Consensus 398 ~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~ 477 (590)
T 3p9d_C 398 FIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEM 477 (590)
T ss_dssp ------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHH
Confidence 999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCcccc
Q 009082 418 ELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWD 497 (544)
Q Consensus 418 ~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~d 497 (544)
+++.+|++++...++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||+.+|++.||++.||||
T Consensus 478 ~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~d 557 (590)
T 3p9d_C 478 AVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWE 557 (590)
T ss_dssp HHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCE
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeE
Confidence 99999999988899999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 498 LYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 498 p~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
|+.||+++|+.|+|+|++|||||++|...|
T Consensus 558 p~~vk~~al~~A~e~a~~iL~id~ii~~~~ 587 (590)
T 3p9d_C 558 PEVIKQQSVKTAIESACLLLRVDDIVSGVR 587 (590)
T ss_dssp EHHHHHHHHHHHHHHHHHTTSEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998654
No 19
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=1.8e-106 Score=877.33 Aligned_cols=502 Identities=27% Similarity=0.441 Sum_probs=473.5
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCch
Q 009082 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (544)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (544)
+| .+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|||||
T Consensus 42 ~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTT 120 (562)
T 3p9d_E 42 HG-LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTT 120 (562)
T ss_dssp HH-HHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCTT
T ss_pred ch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHHHHHHHHhhcCCCcc
Confidence 45 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC--HHHHHHHHHHhhcccc-CCchh
Q 009082 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN--TEEVIYRMKAAVASKQ-FGQEE 178 (544)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~--~~~l~~i~~t~l~sk~-~~~~~ 178 (544)
|++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+ +. .+..+ ++.|.++++|+++||+ ..+.+
T Consensus 121 tvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-v~-~~~~~~~~e~L~~vA~tSl~sK~i~~~~d 198 (562)
T 3p9d_E 121 GVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDD-IS-ASNDELFRDFLLRAAKTSLGSKIVSKDHD 198 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSS-SS-BCCCSSCHHHHHHHHHHHHSSSTTTTTHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cC-CCcchhhHHHHHHHHHHhcCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999876 21 01112 3889999999999995 45789
Q ss_pred hHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccc------cCceEEEEEeeccc
Q 009082 179 ILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM------EKAKVAVFAGGVDT 250 (544)
Q Consensus 179 ~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~------~n~kIlll~~~l~~ 250 (544)
+|+++++||+..+.+...+++|+++|+|++++||+++||++++|++|++++. .||+.+ +|+||+++++||++
T Consensus 199 ~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~~~~~~~~~~~kIall~~~le~ 278 (562)
T 3p9d_E 199 RFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEP 278 (562)
T ss_dssp HHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-----TTCSSCEECEEESCCSS
T ss_pred HHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCcccccccccccceEEEecccccc
Confidence 9999999999998764334689999999999999999999999999999985 589888 89999999999999
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHh
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~t 330 (544)
.+++.++++.+++++++..+.+.|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|||++|
T Consensus 279 ~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~T 358 (562)
T 3p9d_E 279 PKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAIST 358 (562)
T ss_dssp CCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHHHHH
T ss_pred cccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEe--cCCCCCCCCccceeEEEEEECC--eEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCC
Q 009082 331 GAVAM--LCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 406 (544)
Q Consensus 331 Ga~ii--l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~ 406 (544)
||+++ +++++++++|+|+.|++..+|+ ++|++|++|+ .++.|||+|||+|+.+++|.||+++|||+++|+++++|
T Consensus 359 Ga~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~-~~~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g 437 (562)
T 3p9d_E 359 NGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSK-ETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDS 437 (562)
T ss_dssp CCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCS-CCSCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSC
T ss_pred CCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999 9999999999999999999985 8999999997 48899999999999999999999999999999999999
Q ss_pred eEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCeeeEecCCC
Q 009082 407 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDLENG 485 (544)
Q Consensus 407 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~-~~~~~gid~~~~ 485 (544)
++|||||++|++|+.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+ ++.++|+|+.+|
T Consensus 438 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g 517 (562)
T 3p9d_E 438 RVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGY 517 (562)
T ss_dssp CEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTT
T ss_pred CcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCC
Confidence 9999999999999999999998899999999999999999999999999999999999999999975 457899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 009082 486 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 527 (544)
Q Consensus 486 ~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~ 527 (544)
++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+++
T Consensus 518 ~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~ 559 (562)
T 3p9d_E 518 GSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGK 559 (562)
T ss_dssp BCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC
T ss_pred cccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999998754
No 20
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=1.5e-107 Score=884.83 Aligned_cols=516 Identities=25% Similarity=0.410 Sum_probs=482.2
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (544)
+++++....+| .+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|
T Consensus 5 ~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~q 83 (546)
T 3p9d_F 5 LLNPKAESLRR-DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQ 83 (546)
T ss_dssp SSCTTEEEEEH-HHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCcchhhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 35666666667 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccc
Q 009082 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (544)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (544)
++++||||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+... +..+++.|.++++|+++||
T Consensus 84 d~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~--~~~~~~~L~~vA~tsl~sK 161 (546)
T 3p9d_F 84 DEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTN--LSNDREFLLQVARSSLLTK 161 (546)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSS--SSTTCHHHHHHHHHHTCST
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccc--cccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999886211 2257899999999999999
Q ss_pred cC-CchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeecc
Q 009082 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (544)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~ 249 (544)
+. .+.++|+++++||+..+.+.....+|+++|+|++++||+..||++++|++|++++. .||++++||||++++|+|+
T Consensus 162 i~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le 241 (546)
T 3p9d_F 162 VDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLE 241 (546)
T ss_dssp THHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSS
T ss_pred cchhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEecccccccCcceecCceEEEecCccc
Confidence 64 46789999999999998642212589999999999999999999999999999874 5899999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcC----------CcEEEeCCccChHHHHHHHHCCeEEEEecC
Q 009082 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESG----------AEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (544)
Q Consensus 250 ~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~----------v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~ 319 (544)
+++++.++++.+++++++..+.+.|++++++++++|+..+ ++|||++++|++.+++||.++||+++++++
T Consensus 242 ~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~ 321 (546)
T 3p9d_F 242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAK 321 (546)
T ss_dssp SCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCC
T ss_pred ccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecCC
Confidence 9999999999999999999999999999999999998764 239999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHH
Q 009082 320 KFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 397 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~ 397 (544)
+++|+|||++|||+++ +++++++++|+|+.|++..+|+++|++|++|+ .+..|||+|||+|+.+++|+||+++|||+
T Consensus 322 ~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~-~~~~~tI~lrG~te~~l~E~kr~l~DAl~ 400 (546)
T 3p9d_F 322 RRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENT-DPKSCTILIKGSTHYALAQTKDAVRDGLR 400 (546)
T ss_dssp HHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCS-CCSCEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCC-CCceEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999997 48999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeCCChhHHHHHHHHHH---hhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 009082 398 TYKAMCRDSRIVPGAAATEIELARRLKE---FSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS- 473 (544)
Q Consensus 398 ~l~~~~~~~~vvpGGG~~E~~l~~~L~~---~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~- 473 (544)
++|+++++|++|||||++|++++.+|++ ++...++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+
T Consensus 401 ~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~ 480 (546)
T 3p9d_F 401 AVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDA 480 (546)
T ss_dssp HHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999998 588889999999999999999999999999999999999999999863
Q ss_pred ----CCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCC
Q 009082 474 ----GKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPR 532 (544)
Q Consensus 474 ----~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~ 532 (544)
++.++|||+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+++.++..
T Consensus 481 ~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~~~~~~~ 543 (546)
T 3p9d_F 481 QDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLKE 543 (546)
T ss_dssp TTSTTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCSSCCC
T ss_pred hcccCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 45679999999999999999999999999999999999999999999999998776554
No 21
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=1.4e-106 Score=874.58 Aligned_cols=506 Identities=25% Similarity=0.419 Sum_probs=478.4
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEc-CCCCEEEeccHHHHHHhccccChHHHHHHHHHHH
Q 009082 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN-HLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~-~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~ 91 (544)
+++++....++ ++++..|+.||..|+++|+|||||+||+|||++ +.|+++|||||+|||++|+++||.|+|++++|++
T Consensus 5 ~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~ 83 (527)
T 3p9d_B 5 IFGDQVTEERA-ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKV 83 (527)
T ss_dssp SSCSCEEEEES-HHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred hhcCcchhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 57888888888 599999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC---HHHHHHHHHH
Q 009082 92 QQEEIGDGANLTISFAGEILQGAEELIRM-GLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN---TEEVIYRMKA 167 (544)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~~~~li~~-gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~---~~~l~~i~~t 167 (544)
|++++||||||++|||++||+++.+++.+ |+||+.|++||+.|.+.++++|++++.+. +..+ ++.|.++++|
T Consensus 84 qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~~~~~~l~~vA~t 159 (527)
T 3p9d_B 84 QDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDN----SHDKTMFREDLIHIAKT 159 (527)
T ss_dssp HHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCC----CCCHHHHHHHHHHHHHH
T ss_pred hHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccC----CCcchhhHHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999999999998762 2222 7899999999
Q ss_pred hhcccc-CCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCC-CcccccCceEEEEE
Q 009082 168 AVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG-SIKNMEKAKVAVFA 245 (544)
Q Consensus 168 ~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~-~~~~~~n~kIlll~ 245 (544)
+++||+ ..++++|++|+++|+.++++++ |++.|+|+++.||++.+|++++|++|++++.+ +|++++||||++++
T Consensus 160 Sl~sK~~~~~~~~i~~li~dAv~~V~~~~----~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~p~~~~n~kIlll~ 235 (527)
T 3p9d_B 160 TLSSKILSQDKDHFAELATNAILRLKGST----NLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIAN 235 (527)
T ss_dssp HHTTSGGGGGHHHHHHHHHHHHHTTCTTC----CTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSCCSCCSSCEEEEEC
T ss_pred ccccCcccchHHHHHHHHHHHHHHhcccC----CcceEEEEEcCCCCccccEEEEeEEEecccCCCCCeeeecceEEEec
Confidence 999996 4567899999999999998653 56789999999999999999999999999854 38899999999999
Q ss_pred eeccccccc-cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHH
Q 009082 246 GGVDTSATE-TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (544)
Q Consensus 246 ~~l~~~~~~-~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le 324 (544)
++|++++++ +++++.+++++++..+.+.|++++++++++|.+.|++|||++++|++.+++||.++||++++++++.+|+
T Consensus 236 ~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle 315 (527)
T 3p9d_B 236 TTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVE 315 (527)
T ss_dssp SCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHH
T ss_pred cccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHH
Confidence 999999998 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHH
Q 009082 325 RFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 402 (544)
Q Consensus 325 ~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~ 402 (544)
|||++|||+++ +++++++++|+|+.|++..+|+++|++|++|+ .+++|||+|||+|+.+++|.||+++|||+++|++
T Consensus 316 ~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~-~~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~a 394 (527)
T 3p9d_B 316 RLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCK-AGEACTIVLRGATDQTLDEAERSLHDALSVLSQT 394 (527)
T ss_dssp HHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSC-CSCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCC-CCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999998 4899999999999999999999999999999999
Q ss_pred hcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEec
Q 009082 403 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDL 482 (544)
Q Consensus 403 ~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~ 482 (544)
+++|++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||+
T Consensus 395 v~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~ 474 (527)
T 3p9d_B 395 TKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDL 474 (527)
T ss_dssp HHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCS
T ss_pred HhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEEC
Confidence 99999999999999999999999988889999999999999999999999999999999999999999987778899999
Q ss_pred CCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCC
Q 009082 483 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 528 (544)
Q Consensus 483 ~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~ 528 (544)
.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.
T Consensus 475 ~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 520 (527)
T 3p9d_B 475 NNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPR 520 (527)
T ss_dssp SSTTCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC--
T ss_pred CCCCCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999998776
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=4.5e-102 Score=833.68 Aligned_cols=486 Identities=29% Similarity=0.492 Sum_probs=378.0
Q ss_pred eeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009082 54 MVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTK 133 (544)
Q Consensus 54 mi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~ 133 (544)
||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||||||+++||++||+++.+++++|+||+.|++||+.
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccC-CchhhHHHHHHHHHHHhCCC--CCCccc-chhhhhhhc
Q 009082 134 AINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLIADACIQVCPK--NPANFN-VDNVRVAKL 209 (544)
Q Consensus 134 a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~-~~~I~i~k~ 209 (544)
|++.++++|++++.+ ++..|++.|.++++|+++||++ +++++|++++++|+.+++++ +..++| +++|+|+++
T Consensus 81 A~~~a~~~L~~~s~~----v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 81 AAEKCREILETITIA----ISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHCEE----CCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 999999999999886 2456799999999999999965 57999999999999999765 433577 788999999
Q ss_pred CCCCCCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009082 210 LGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAE 287 (544)
Q Consensus 210 ~Gg~~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~ 287 (544)
+|+++++|++++|++|++++. .||++++||||++++++|++++++.++++.+++++++..+.++|++++++++++|++
T Consensus 157 ~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~ 236 (500)
T 3aq1_B 157 AGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIA 236 (500)
T ss_dssp ESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHT
T ss_pred cCCCccceEEEeeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 589999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEe
Q 009082 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRN 365 (544)
Q Consensus 288 ~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 365 (544)
.|++|||++++|++.+++||.++||++++++++++|+|||++|||+++ +++++++++|+|+.|++.++|+++|++|++
T Consensus 237 ~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g 316 (500)
T 3aq1_B 237 SGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTG 316 (500)
T ss_dssp TCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEE
T ss_pred hCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEEC
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHH
Q 009082 366 EGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESF 445 (544)
Q Consensus 366 ~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL 445 (544)
|+ .+++|||+|||+|+.+++|.||+++||++++|+++++|++|||||++|++++.+|++++.+.++++|+++++||+||
T Consensus 317 ~~-~~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~AL 395 (500)
T 3aq1_B 317 CQ-NSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEAL 395 (500)
T ss_dssp ET-TCCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CC-CCceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHH
Confidence 97 48999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhcc
Q 009082 446 EMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 525 (544)
Q Consensus 446 ~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~ 525 (544)
+.||++|++|||+|+.+++.+|++.|.+++.++|+|..+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 396 e~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~ 475 (500)
T 3aq1_B 396 EVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVAS 475 (500)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999877778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-C--CCCCCCCCC
Q 009082 526 KPAGGPRRD-Q--QPGGGMDED 544 (544)
Q Consensus 526 ~~~~~~~~~-~--~~~~~~~~~ 544 (544)
+|..+++++ + ..-++||.|
T Consensus 476 ~~~~~~~~~~g~~~~~~~~~~~ 497 (500)
T 3aq1_B 476 KGSANQGMGPGGLPDMPDLDMD 497 (500)
T ss_dssp ----------------------
T ss_pred CccCCCCCCCCCCCCCCCCCcc
Confidence 887655441 0 114678876
No 23
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=5.9e-93 Score=766.83 Aligned_cols=467 Identities=21% Similarity=0.306 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
.+++.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++|| .|+|++++|++|++++||||
T Consensus 9 ~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 88 (543)
T 1we3_A 9 EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGT 88 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhheecCCCc
Confidence 59999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||++|||++||+++.+++.+|+||+.|++||+.|++.+++.|++++.+ +.+++.|.++++++.+ ++++
T Consensus 89 TtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~------v~~~~~l~~vA~iS~~------~~~i 156 (543)
T 1we3_A 89 TTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIP------VEDRKAIEEVATISAN------DPEV 156 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBC------CCSHHHHHHHHHHHHT------CHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCCHHHHHHhhhhhcC------CHHH
Confidence 999999999999999999999999999999999999999999999875 3478999999876654 6789
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCc-eeEeeEEEeecCC---------CCcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+.++++++. +. |. .|+++++| ++++|++|++++. .|++.++||+|++++++
T Consensus 157 ~~li~dAv~~V~~~g~--I~-----Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~--- 224 (543)
T 1we3_A 157 GKLIADAMEKVGKEGI--IT-----VE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK--- 224 (543)
T ss_dssp HHHHHHHHHTTCTTSE--EE-----EE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSC---
T ss_pred HHHHHHHHHHhCcCCc--EE-----Ee--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCC---
Confidence 9999999999976542 33 32 79999998 9999999999863 36778999999999986
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHH------CCeEEEE-----ecC
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLK-----ISS 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~------~~I~vv~-----~v~ 319 (544)
+++++++ .++++++.+.|++|||++++|++.+++||.. .+|++|+ +++
T Consensus 225 ----------Is~~~~l-----------~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~ 283 (543)
T 1we3_A 225 ----------VSNVREL-----------LPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRR 283 (543)
T ss_dssp ----------BCCHHHH-----------HHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHH
T ss_pred ----------cCCHHHH-----------HHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhh
Confidence 4555554 3789999999999999999999999999986 6889999 556
Q ss_pred HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCC------------------------
Q 009082 320 KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 368 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 368 (544)
+++|+|||++|||+++ +++++++++|+|+.|++ +.+++++|++|.+
T Consensus 284 ~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 360 (543)
T 1we3_A 284 KEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAR 360 (543)
T ss_dssp HHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHH
Confidence 7899999999999998 46788889999999975 5789999999863
Q ss_pred ----------CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 369 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 369 ----------~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
+++++||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++.+.++++|+++
T Consensus 361 e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i 439 (543)
T 1we3_A 361 EKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGA 439 (543)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHHHHH
Confidence 13789999999999999999999999999999999999 9999999999999999999887889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++||+||+.||++|++|||+|+.+++.+|++.|. +.++|||..+|++.||++.|||||+.+|+++|+.|+|+|++||+
T Consensus 440 ~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~--~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~ 517 (543)
T 1we3_A 440 KIVRRALEEPARQIAENAGYEGSVIVQQILAETK--NPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILT 517 (543)
T ss_dssp HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS--CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcC--CCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998763 56899999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCCCCC-CCCC
Q 009082 519 VDQIIMAKPAGGPRRDQQPG-GGMD 542 (544)
Q Consensus 519 iD~ii~~~~~~~~~~~~~~~-~~~~ 542 (544)
||++|..+|...+++|+.++ ++||
T Consensus 518 id~iI~~~~~~~~~~~~~~~~~~~~ 542 (543)
T 1we3_A 518 TEAVVAEKPEKKESTPASAGAGDMD 542 (543)
T ss_dssp EEEEEEECSCC--------------
T ss_pred HHHHhhcCCccCCCCCCCCCCCCCC
Confidence 99999999987776775544 5665
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=7.6e-91 Score=749.18 Aligned_cols=453 Identities=19% Similarity=0.303 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
.+++.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++|| .|+|++++|++|++++||||
T Consensus 9 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 88 (547)
T 1kp8_A 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhccccCCCc
Confidence 59999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+ +.+++.|.++++++++ ++++|
T Consensus 89 TtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~------v~~~e~l~~vA~iS~~-----~~~~i 157 (547)
T 1kp8_A 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP------CSDSKAIAQVGTISAN-----SDETV 157 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBC------CCSHHHHHHHHHHHTT-----SCHHH
T ss_pred chhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcC------CCCHHHHHHHHHHhcc-----chhHH
Confidence 999999999999999999999999999999999999999999999875 3478999999887654 37899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCc-eeEeeEEEeecCC---------CCcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+.++++++. +. |. .|+++++| ++++|++|++++. .|++.++||+|++++++
T Consensus 158 ~~liadAv~~V~~dg~--I~-----Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~--- 225 (547)
T 1kp8_A 158 GKLIAEAMDKVGKEGV--IT-----VE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKK--- 225 (547)
T ss_dssp HHHHHHHHHHHCTTSE--EE-----EE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESE---
T ss_pred HHHHHHHHHHhCcCCc--EE-----EE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCc---
Confidence 9999999999976542 33 32 79999999 9999999999863 36778999999999997
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHH------CCeEEEE-----ecC
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLK-----ISS 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~------~~I~vv~-----~v~ 319 (544)
+++++++. ++++++.+.|++|||++++|++++++||.. .+|++|+ +++
T Consensus 226 ----------Is~~~~l~-----------~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~r 284 (547)
T 1kp8_A 226 ----------ISNIREML-----------PVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284 (547)
T ss_dssp ----------ECCGGGTH-----------HHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHH
T ss_pred ----------CCCHHHHH-----------HHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEecccccccc
Confidence 45555543 788999999999999999999999999987 6789999 556
Q ss_pred HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009082 320 KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 369 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 369 (544)
+++|+|||++|||+++ +++++++++|+|+.|++ +.+++++|++|.+.
T Consensus 285 k~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 361 (547)
T 1kp8_A 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDR 361 (547)
T ss_dssp HHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHH
T ss_pred HHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhH
Confidence 8899999999999999 47788899999999976 57899999998631
Q ss_pred -----------cceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 370 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 370 -----------~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
++++||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++. .++++|+++
T Consensus 362 ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i 439 (547)
T 1kp8_A 362 EKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG-QNADQNVGI 439 (547)
T ss_dssp HHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-SSHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-cCchHHHHH
Confidence 2789999999999999999999999999999999999 999999999999999999876 788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++|++||+.||++|++|||+|+.+++++|++. +.++|||..+|++.||++.|||||+.+|+++|+.|+|+|++||+
T Consensus 440 ~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~ 515 (547)
T 1kp8_A 440 KVALRAMEAPLRQIVLNCGEEPSVVANTVKGG----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMIT 515 (547)
T ss_dssp HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc----CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864 46799999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCC
Q 009082 519 VDQIIMAKPAGG 530 (544)
Q Consensus 519 iD~ii~~~~~~~ 530 (544)
+|++|..+|...
T Consensus 516 id~iI~~~~~~~ 527 (547)
T 1kp8_A 516 TECMVTDLPKND 527 (547)
T ss_dssp EEEEEEECCC--
T ss_pred HhheeecCCccC
Confidence 999999988643
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=4e-91 Score=751.98 Aligned_cols=453 Identities=21% Similarity=0.302 Sum_probs=388.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (544)
.+++.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++|| .|+|++++|++|++++||||
T Consensus 10 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 89 (545)
T 1iok_A 10 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGT 89 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGGCSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhccccCCCc
Confidence 59999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||++|||++||+++.+++.+|+||+.|++||+.|.+.+++.|++++.+ +.+++.|.++++++++ ++++|
T Consensus 90 TtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~------v~~~e~l~~va~iS~~-----~~~~i 158 (545)
T 1iok_A 90 TTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARP------VNDSSEVAQVGTISAN-----GESFI 158 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBC------CCSTTTTTHHHHHTTT-----TCHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCCHHHHHHHHHhhcC-----CchhH
Confidence 999999999999999999999999999999999999999999999875 2356788899877654 37899
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCc-eeEeeEEEeecCC---------CCcccccCceEEEEEeeccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (544)
++++++|+.++++++. +.++ .|+++++| ++++|++|++++. .|++.++||+|++++++++
T Consensus 159 ~~li~dAv~~V~~~g~--I~Ve-------~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~- 228 (545)
T 1iok_A 159 GQQIAEAMQRVGNEGV--ITVE-------ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS- 228 (545)
T ss_dssp HHHHHHHHHHHCTTSC--CCCE-------ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC-
T ss_pred HHHHHHHHHHhccCCe--EEEE-------eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcC-
Confidence 9999999999986543 4332 79999999 9999999999863 3677899999999999743
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHH------CCeEEEE-----ecC
Q 009082 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLK-----ISS 319 (544)
Q Consensus 251 ~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~------~~I~vv~-----~v~ 319 (544)
+++++ .++++++.+.|++|||++++|++.+++||.. .+|++|+ +++
T Consensus 229 ------------~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~ 285 (545)
T 1iok_A 229 ------------SLQPM-----------VPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRR 285 (545)
T ss_dssp ------------CCCC----------------------CCCCEEEESCBC-----------------CEEEECSCCTTHH
T ss_pred ------------CHHHH-----------HHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhcc
Confidence 33343 3688889999999999999999999999987 5678998 666
Q ss_pred HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCC------------------------
Q 009082 320 KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 368 (544)
Q Consensus 320 ~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 368 (544)
+++|+|||++|||+++ +++++++++|+|+.|++ +.+++++|++|++
T Consensus 286 ~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 362 (545)
T 1iok_A 286 KAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDR 362 (545)
T ss_dssp HHHHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHH
T ss_pred HHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhH
Confidence 8999999999999998 56788899999999976 5689999999863
Q ss_pred ----------CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHH
Q 009082 369 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 438 (544)
Q Consensus 369 ----------~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 438 (544)
+++++||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++. .++++|+++
T Consensus 363 ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i 440 (545)
T 1iok_A 363 EKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQDAGI 440 (545)
T ss_dssp HHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHHHHH
T ss_pred HHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHHHHH
Confidence 13789999999999999999999999999999999999 999999999999999998876 788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009082 439 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 518 (544)
Q Consensus 439 ~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 518 (544)
++||+||+.||++|++|||+|+.+++++|++.| +.++|||..+|++.||++.|||||+.+|+++|+.|+|+|++||+
T Consensus 441 ~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~ 517 (545)
T 1iok_A 441 AIIRRALEAPMRQIAENAGVDGAVVAGKVRESS---DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLIT 517 (545)
T ss_dssp HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC---STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999765 46799999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCC
Q 009082 519 VDQIIMAKPAG 529 (544)
Q Consensus 519 iD~ii~~~~~~ 529 (544)
||++|...|..
T Consensus 518 id~iI~~~~~~ 528 (545)
T 1iok_A 518 TEAMIAEKPEP 528 (545)
T ss_dssp EEEEEEECC--
T ss_pred HHHhhccCCcc
Confidence 99999998864
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=4.6e-91 Score=748.81 Aligned_cols=457 Identities=21% Similarity=0.270 Sum_probs=344.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCCc
Q 009082 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (544)
++++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++|++++||||
T Consensus 9 ~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~e~GDGT 88 (546)
T 3rtk_A 9 EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGT 88 (546)
T ss_dssp ----------------------------------------------------CCCHHHHHHHHHHHHHHTSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhhhhCCCc
Confidence 599999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhH
Q 009082 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (544)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (544)
||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ +.+++.|.++++++.+ ++++
T Consensus 89 TtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~------v~~~e~L~~vA~iS~~------~~~i 156 (546)
T 3rtk_A 89 TTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKE------VETKEQIAATAAISAG------DQSI 156 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBC------CCSHHHHHHHHHHHHT------CHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCChHHHHhHeEEeCC------chHH
Confidence 999999999999999999999999999999999999999999999875 3478899999987664 5689
Q ss_pred HHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCC---------CCcccccCceEEEEEeecccc
Q 009082 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (544)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (544)
++++++|+.++++++. |+|.+. ++...+|++++|++|++++. .|+++++||+|++++++
T Consensus 157 ~~liadAv~~V~~dgv-------I~Ve~~-~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~k---- 224 (546)
T 3rtk_A 157 GDLIAEAMDKVGNEGV-------ITVEES-NTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSK---- 224 (546)
T ss_dssp HHHHHHHHHHSCTTSE-------EEEECC-SSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSE----
T ss_pred HHHHHHHHHHhccCCc-------eEEEec-CCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCc----
Confidence 9999999999976542 334442 24557999999999998863 57889999999999986
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHC------CeEEEEecC-----H
Q 009082 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS-----K 320 (544)
Q Consensus 252 ~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~------~I~vv~~v~-----~ 320 (544)
+++++++. ++++++.+.|++|||++++|++.++++|..+ +|++|+.++ +
T Consensus 225 ---------Is~~~~l~-----------~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk 284 (546)
T 3rtk_A 225 ---------VSTVKDLL-----------PLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRK 284 (546)
T ss_dssp ---------ECCSTTTH-----------HHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHH
T ss_pred ---------cCCHHHHH-----------HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccch
Confidence 45555553 6789999999999999999999999999853 578888665 6
Q ss_pred HHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEEEECCeEEEEEEecCC-------------------------
Q 009082 321 FELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------- 368 (544)
Q Consensus 321 ~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 368 (544)
++|+|||++|||+++ ++++++++||+|+.|+ ++.+++++|++|.+
T Consensus 285 ~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e 361 (546)
T 3rtk_A 285 AMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDRE 361 (546)
T ss_dssp HHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred hhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHH
Confidence 789999999999998 4678889999999997 58889999999863
Q ss_pred ---------CcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHHhhccccChHHHHHH
Q 009082 369 ---------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 439 (544)
Q Consensus 369 ---------~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~ 439 (544)
+++++||+|||+|+.+++|.||+++|||+++|+++++| +|||||++|++++.+|++++ .++++|++++
T Consensus 362 kl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~--~~g~eq~~i~ 438 (546)
T 3rtk_A 362 KLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK--LEGDEATGAN 438 (546)
T ss_dssp HHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC--CCTTHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc--cccHHHHHHH
Confidence 12489999999999999999999999999999999999 99999999999999999887 7899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHHHHHHHHHHHHHhch
Q 009082 440 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 519 (544)
Q Consensus 440 ~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~i 519 (544)
+||+||+.||++|++|||+|+.+++++|++. ...+|||..+|++.||++.|||||+.||+++|+.|+|+|++||++
T Consensus 439 ~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~----~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~i 514 (546)
T 3rtk_A 439 IVKVALEAPLKQIAFNSGLEPGVVAEKVRNL----PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTT 514 (546)
T ss_dssp HHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS----CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh----cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874 234899999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCC
Q 009082 520 DQIIMAKPAGGPRRDQ 535 (544)
Q Consensus 520 D~ii~~~~~~~~~~~~ 535 (544)
|++|..+|..++.+|+
T Consensus 515 d~iI~~~~~~~~~~~~ 530 (546)
T 3rtk_A 515 EAVVADKPEKEKASVP 530 (546)
T ss_dssp C---------------
T ss_pred HHHHhcCCCCCCCCCC
Confidence 9999999886654443
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=1.9e-35 Score=274.11 Aligned_cols=169 Identities=17% Similarity=0.369 Sum_probs=145.1
Q ss_pred CCCceeEeeEEEeecCC--CCcccccCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 009082 214 LHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE 291 (544)
Q Consensus 214 ~~dS~li~Givl~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~ 291 (544)
++||++++|++|++++. +||++++||||++++++|++++++.++++.+++++++..+.+.|++++++++++|++.|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36899999999999874 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--cCCCCCCCCcc-ceeEEEEEECCeEEEEEEecCC
Q 009082 292 VIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGG 368 (544)
Q Consensus 292 lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~ 368 (544)
||+++++|++++++||+++||++++++++++|+|||++|||+++ +++++++.+|+ |+.|++..+|+++|++|++|++
T Consensus 81 VVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~ 160 (178)
T 1gml_A 81 VVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD 160 (178)
T ss_dssp EEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESS
T ss_pred EEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999 89999999999 9999999999999999999984
Q ss_pred CcceEEEEEeCCCHh
Q 009082 369 GNSVSTVVLRGSTDS 383 (544)
Q Consensus 369 ~~~~~TIll~g~t~~ 383 (544)
+++|||+|||++.+
T Consensus 161 -~~~~TIllRG~~~~ 174 (178)
T 1gml_A 161 -PKACTILLRGASHH 174 (178)
T ss_dssp -TTSCEEEEEC----
T ss_pred -CCEEEEEEECCCcc
Confidence 89999999999875
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.97 E-value=7.6e-31 Score=238.36 Aligned_cols=149 Identities=21% Similarity=0.415 Sum_probs=144.1
Q ss_pred EeeEEEeecCCC--CcccccCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCC
Q 009082 220 VRGMVLKSDAVG--SIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGA 297 (544)
Q Consensus 220 i~Givl~~~~~~--~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~ 297 (544)
++|++|++++.+ ||++++||||++++|+|++++++.++++.+++++++..+.+.|++++++++++|++.|+||||+++
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 579999999864 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCC
Q 009082 298 AVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG 368 (544)
Q Consensus 298 ~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~ 368 (544)
+|++++++||+++||++++++++++|+|||++|||+++ +++++++.+|+|+.|++..+|+++|++|++|++
T Consensus 81 ~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~ 153 (159)
T 1ass_A 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153 (159)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC-
T ss_pred ccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCC
Confidence 99999999999999999999999999999999999999 899999999999999999999999999999974
No 29
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.05 E-value=3.8e-09 Score=95.93 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=109.0
Q ss_pred ceeEeeEEEeecCC---------CCcccccCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009082 217 STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAE 287 (544)
Q Consensus 217 S~li~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~ 287 (544)
.++++|+-|++++. .|...++||.|++.+.. +++..++. +.++++.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkK-------------Is~i~~il-----------P~LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDK-------------ISSLPDLL-----------PLLEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSE-------------ECCHHHHH-----------HHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCc-------------cCCHHHHH-----------HHHHHHHH
Confidence 46889999999873 35566889999998876 67777776 88899999
Q ss_pred cCCcEEEeCCccChHHHHHHH--H----CCeEEEEecC-----HHHHHHHHHHhCCeEe-------cCCCCCCCCcccee
Q 009082 288 SGAEVIVSGAAVGEMALHFCE--R----YKLMVLKISS-----KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDS 349 (544)
Q Consensus 288 ~~v~lVi~~~~i~~~~l~~l~--~----~~I~vv~~v~-----~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~ 349 (544)
.+.+++|...+|+..++.-|. + .++++|+.++ +..|++||.+||++++ +++.+.++||+|++
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~ 137 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR 137 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence 999999999999999887553 2 7799999998 6789999999999999 56778889999999
Q ss_pred EEEEEECCeEEEEEEecCCCcceEEEEEe-CCCHhHHHHHHHHHHHHHH
Q 009082 350 VSVEEIGGARVTIVRNEGGGNSVSTVVLR-GSTDSILDDLERAVDDGVN 397 (544)
Q Consensus 350 v~~~~ig~~~~~~~~~~~~~~~~~TIll~-g~t~~~l~e~~~~i~dal~ 397 (544)
|.+. +--|.++. +.++..++++-..++..+.
T Consensus 138 v~vt-----------------kd~T~iv~G~g~~~~I~~Rv~qIr~~ie 169 (194)
T 3m6c_A 138 VVVS-----------------KDDTVIVDGGGTAEAVANRAKHLRAEID 169 (194)
T ss_dssp EEEC-----------------SSCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred EEEc-----------------CCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 8631 22255554 4566666666666655443
No 30
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=98.97 E-value=1.8e-08 Score=91.70 Aligned_cols=136 Identities=16% Similarity=0.241 Sum_probs=106.0
Q ss_pred eeEEEeecCC---------CCcccccCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 009082 221 RGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE 291 (544)
Q Consensus 221 ~Givl~~~~~---------~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~ 291 (544)
+|+-|++++. .|...++||.|++.+.. +++..++. ++++++.+.+.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~il-----------P~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKK-------------ISNIRELL-----------PVLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEE-------------ECCHHHHH-----------HHHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCc-------------cCCHHHHH-----------HHHHHHHHhCCC
Confidence 5888998873 35567889999999986 67777776 899999999999
Q ss_pred EEEeCCccChHHHHHHH--H----CCeEEEEecC-----HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEEE
Q 009082 292 VIVSGAAVGEMALHFCE--R----YKLMVLKISS-----KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSVE 353 (544)
Q Consensus 292 lVi~~~~i~~~~l~~l~--~----~~I~vv~~v~-----~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~~ 353 (544)
|+|....|+..++.-|. + .++++|+.++ +..|++||.+||++++ +++.+.++||+|++|.+.
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vt 148 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVIN 148 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEEC
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEc
Confidence 99999999999887553 2 7799999998 6779999999999999 567788899999998631
Q ss_pred EECCeEEEEEEecCCCcceEEEEEe-CCCHhHHHHHHHHHHHHHH
Q 009082 354 EIGGARVTIVRNEGGGNSVSTVVLR-GSTDSILDDLERAVDDGVN 397 (544)
Q Consensus 354 ~ig~~~~~~~~~~~~~~~~~TIll~-g~t~~~l~e~~~~i~dal~ 397 (544)
+--|+++. +.++..++++-..++..+.
T Consensus 149 -----------------kd~TtIv~G~G~~~~I~~Rv~qIr~qie 176 (201)
T 3osx_A 149 -----------------KDTTTIIDGVGEEGAIAARVTQIRQQIE 176 (201)
T ss_dssp -----------------SSCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 22255554 4566666666666655443
No 31
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=98.92 E-value=6.8e-09 Score=89.90 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=89.7
Q ss_pred eEEEeecCC---------CCcccccCceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q 009082 222 GMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEV 292 (544)
Q Consensus 222 Givl~~~~~---------~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~l 292 (544)
|+.|+|++. .|...++||.|++.+.. +++.+++. +.++++.+.+.++
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~ll-----------P~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK-------------VSNVRELL-----------PILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSE-------------ECCHHHHH-----------HHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEeccc-------------ccCHHHHH-----------HHHHHHHHHCCCE
Confidence 677887763 35666889999999876 67777776 8899999999999
Q ss_pred EEeCCccChHHHHHHH--H----CCeEEEEecC-----HHHHHHHHHHhCCeEe-------cCCCCCCCCccceeEEE
Q 009082 293 IVSGAAVGEMALHFCE--R----YKLMVLKISS-----KFELRRFCRTTGAVAM-------LCQPNPDDLGYVDSVSV 352 (544)
Q Consensus 293 Vi~~~~i~~~~l~~l~--~----~~I~vv~~v~-----~~~le~Ia~~tGa~ii-------l~~l~~~~lG~~~~v~~ 352 (544)
+|.+..++..++.-|. + .++++|+.++ +..|++||.+||++++ +++.+.++||+|++|.+
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~v 134 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI 134 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEE
Confidence 9999999999987654 2 7799999997 6789999999999999 56677889999999974
No 32
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=55.60 E-value=21 Score=30.24 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ 333 (544)
...+.|.+.++++||+. ++.+-+...|.+.||-++......--+.|.....++
T Consensus 67 ~~a~~L~~~gv~vVI~g-~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVR-GIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp CHHHHHHHTTCSEEECS-CCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 34556777899999998 589999999999999999876644444455544444
No 33
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=55.16 E-value=23 Score=29.17 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ 333 (544)
...+.|.+.++++||+. ++.+-+...|.+.||-++......--+.|.....+.
T Consensus 54 ~~~~~L~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 45566778899999998 589999999999999999875543344455544444
No 34
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=52.88 E-value=31 Score=28.43 Aligned_cols=52 Identities=10% Similarity=0.161 Sum_probs=38.9
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ 333 (544)
..+.|...|+++||+.. +.+-+...|.+.||-++......--+.|.....+.
T Consensus 57 ~~~~l~~~gv~~vi~~~-iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIASS-PGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEECC-SSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEECC-cCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 44556788999999995 89999999999999999975543344455444444
No 35
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=49.83 E-value=25 Score=28.79 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=38.1
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCH-HHHHHHHHHhCC
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK-FELRRFCRTTGA 332 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~-~~le~Ia~~tGa 332 (544)
..+.|.+.++++|||. ++.+-+...|.+.||-++..... .--+.|.....+
T Consensus 59 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g 110 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YVGPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDG 110 (120)
T ss_dssp HHHHHHHHTEEEEECS-CCCHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEC-CCCHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcC
Confidence 4555677899999998 58999999999999999987654 333444444433
No 36
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=40.47 E-value=10 Score=21.81 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCC
Q 009082 532 RRDQQPGGGMDED 544 (544)
Q Consensus 532 ~~~~~~~~~~~~~ 544 (544)
+|+.+| -.||||
T Consensus 6 rprkrp-lewded 17 (28)
T 3ukw_C 6 RPRKRP-LEWDED 17 (28)
T ss_dssp -CCCCC-CCCCGG
T ss_pred ccccCC-cccccc
Confidence 345565 789997
No 37
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=39.43 E-value=27 Score=28.37 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009082 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (544)
Q Consensus 281 ~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ 333 (544)
..+.|...++++||+.. +.+-+...|.+.||-++......--+.|.....+.
T Consensus 54 ~~~~l~~~gv~~vi~~~-iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 105 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIASN-VGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEGR 105 (116)
T ss_dssp HHHHHHTTTCCEEECSS-CCSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEECC-CCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhCC
Confidence 34456788999999985 89999999999999999865543344455444444
No 38
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=38.43 E-value=46 Score=28.05 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ 333 (544)
...+.|.+.++++||+. ++.+-+...|.+ ||-++......--+.|.....+.
T Consensus 70 ~~~~~L~~~gv~~VI~g-~iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G~ 121 (136)
T 2re2_A 70 FMLKSALDHGANALVLS-EIGSPGFNFIKN-KMDVYIVPEMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHHTTCSEEEES-CCBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhCC
Confidence 34555677899999998 589999999999 99999986633334444444443
No 39
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=38.19 E-value=69 Score=29.60 Aligned_cols=53 Identities=4% Similarity=0.108 Sum_probs=39.5
Q ss_pred HHHHHhcCCcEEEeCCccC-hHHHHHHHHCCeEEEEec---C----HHHHHHHHHHhCCeE
Q 009082 282 IKAVAESGAEVIVSGAAVG-EMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAVA 334 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~-~~~l~~l~~~~I~vv~~v---~----~~~le~Ia~~tGa~i 334 (544)
+|+|..++++|||...... +...+.|.+.||.++-.- + .+.++.++.++|-.-
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~~ 112 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQTE 112 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCHH
Confidence 4568899999999887654 456778899988776542 2 456888999999743
No 40
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=36.79 E-value=36 Score=31.67 Aligned_cols=52 Identities=10% Similarity=0.113 Sum_probs=36.4
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEE--ecC----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK--ISS----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~--~v~----~~~le~Ia~~tGa~ 333 (544)
+|+|..++++|||.....++...+.|.+.+|.++- .-+ .+.++.++.++|-.
T Consensus 53 ~E~i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 34578889999998766555667788888765443 222 35678888888864
No 41
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=35.39 E-value=81 Score=29.11 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHhcCCcEEEeCCc-cChHHHHHHHHCCeEEEEec----C----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKIS----S----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~-i~~~~l~~l~~~~I~vv~~v----~----~~~le~Ia~~tGa~ 333 (544)
+|+|..++++|||.... .+....+.|.+.+|.++-.. + .+.++.++.++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 45678999999998654 45667788899998665431 2 24578888888864
No 42
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=34.72 E-value=69 Score=24.34 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHH
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
+.++.+.+-.+.+||.+.+.++... .++.+++|.++...++.+|-+.+
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLGKAC 69 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHH
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 4455566667899999999998543 45678999999988887765544
No 43
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=34.33 E-value=75 Score=29.97 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHHhcCCcEEEeCCcc-ChHHHHHHHHCCeEEEEec---C----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAV-GEMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i-~~~~l~~l~~~~I~vv~~v---~----~~~le~Ia~~tGa~ 333 (544)
+|+|..++++|||..... ++...+.|.+.||.++-.. + .+.++.++.++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 52 AEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp HHHHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 455889999999987643 4567788999988766432 2 35688889998864
No 44
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=34.30 E-value=64 Score=31.16 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC--------------------------HHHHHHHHHHhCCeE
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS--------------------------KFELRRFCRTTGAVA 334 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~--------------------------~~~le~Ia~~tGa~i 334 (544)
+|+|..++++|||.....++...+.|.+.||.++-.-. .+.++.++.++|-.-
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e~ 155 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKKQ 155 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCHH
Confidence 35578899999998766566777888888887765321 356788999988653
No 45
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=32.85 E-value=57 Score=30.01 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=35.4
Q ss_pred HHHHHhcCCcEEEeCC-ccChHHHHHHHHCCeEEEEec--C----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGA-AVGEMALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~-~i~~~~l~~l~~~~I~vv~~v--~----~~~le~Ia~~tGa~ 333 (544)
+|+|..++++|||... ..++...+.|.+.||.++-.- + .+.++.++.++|-.
T Consensus 50 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~~ 108 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 108 (245)
T ss_dssp HHHHHHTCCSEEEECTTTSCHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHGGGCSCH
T ss_pred HHHHhccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHhCCH
Confidence 3557889999999863 456667788888887666422 2 34566677777653
No 46
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=31.07 E-value=1.1e+02 Score=25.49 Aligned_cols=49 Identities=6% Similarity=0.284 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCcEEEeCCccCh-----HHHHHHHHCCeEEEEecCHHHHHHHHH
Q 009082 280 GLIKAVAESGAEVIVSGAAVGE-----MALHFCERYKLMVLKISSKFELRRFCR 328 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~-----~~l~~l~~~~I~vv~~v~~~~le~Ia~ 328 (544)
..++.|.+-.+.+||.+.+.++ .+..+|.+++|.++...++.+|-+.+-
T Consensus 31 ~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G 84 (126)
T 2xzm_U 31 EVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLG 84 (126)
T ss_dssp HHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHT
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHC
Confidence 4455566677899999999975 345678899999998777776665554
No 47
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=30.35 E-value=1.2e+02 Score=24.82 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCcEEEeCCccChH-----HHHHHHHCCeEEEEecCHHHHHHHHH
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCR 328 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~-----~l~~l~~~~I~vv~~v~~~~le~Ia~ 328 (544)
..++.|.+-.+.+||.+.++++. +..+|.++||.++...++.+|-+.+.
T Consensus 27 ~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g 80 (121)
T 2lbw_A 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGA 80 (121)
T ss_dssp HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHT
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhC
Confidence 45566777788999999999883 33567889999998888877666443
No 48
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=30.29 E-value=84 Score=30.15 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~----~~~le~Ia~~tGa~ 333 (544)
+|+|..++++|||.....++...+.|.+.+..++-... .+.++.++.++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~L~~~gp~v~~~~~~~~~~~~i~~lg~~lg~e 144 (311)
T 2wi8_A 89 IEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLTGKE 144 (311)
T ss_dssp HHHHHHHCCSEEEEETTSCHHHHHHHHTTSCEEEECCCGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCCEEEEcCccCHHHHHHHHhhCCEEEeeCCCcCHHHHHHHHHHHhCCH
Confidence 34577889999998766677777888887765543322 45688889888864
No 49
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=28.36 E-value=92 Score=30.25 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=36.9
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEec--C----HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v--~----~~~le~Ia~~tGa~ 333 (544)
+|+|..++++|||.... +....+.|.+.||.++-.- + .+.++.++.++|-.
T Consensus 109 ~E~i~al~PDLIi~~~~-~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 109 TEACVAATPDVVFLPMK-LKKTADTLESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHHHTCCSEEEEEGG-GHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEEeCc-chhHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 56788999999998765 4556677888887666432 2 35678888888864
No 50
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=28.15 E-value=1e+02 Score=24.35 Aligned_cols=47 Identities=6% Similarity=0.080 Sum_probs=34.7
Q ss_pred HHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009082 283 KAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (544)
Q Consensus 283 ~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tG 331 (544)
+.+.+.++++|||. ++.+-+...|.+. |-++......--+.|.....
T Consensus 50 ~~l~~~gv~~vi~~-~iG~~a~~~L~~~-I~v~~~~~~~v~eal~~~~~ 96 (105)
T 2qtd_A 50 KSIVKENVNAIICK-NISEENYKKFSKK-IEIYHAEGDDVDKNISLFIE 96 (105)
T ss_dssp HHHHHTCCSEEEES-CCCHHHHHHHHTT-CEEEECCSSCHHHHHHHHHT
T ss_pred HHHHHCCCCEEEEC-CCCHHHHHHHHhc-cEEEECCCCCHHHHHHHHHc
Confidence 45667899999997 5899999999999 99998655333344444433
No 51
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.74 E-value=1.5e+02 Score=28.17 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCcEEEeCCccCh-----HHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEe-cCCCCCCCCc
Q 009082 280 GLIKAVAESGAEVIVSGAAVGE-----MALHFCERYKLMVLKISSKFELRRFCRTTGAVAM-LCQPNPDDLG 345 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~-----~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~ii-l~~l~~~~lG 345 (544)
..+..|.+-.+.+||.+.++++ ....+|.+.||.++...++.+|-..+-.-++..+ +.+...++-|
T Consensus 142 eV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~~s~VAItD~G~eD~~ 213 (266)
T 2zkr_f 142 TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKG 213 (266)
T ss_dssp HHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSSCCSEEEETTCSSTTTT
T ss_pred HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCceEEEEeecCcchHH
Confidence 4456666667899999999987 3447788999999998888888777766656655 5555444433
No 52
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=27.26 E-value=60 Score=30.97 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=38.2
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecC----HHHHHHHHHHhCCeE
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAVA 334 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~----~~~le~Ia~~tGa~i 334 (544)
+|+|..++++|||.....++...+.+.+.++.++..-. .+.++.++.++|-.-
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~l~~i~p~v~~~~~~~~~~~~i~~lg~~~g~e~ 145 (303)
T 3tny_A 89 VETIASLKPDLIIGNKMRHEKVYEQLKAIAPTVFSETLRGEWKDNFKFYAKALNKEK 145 (303)
T ss_dssp HHHHHHTCCSEEEEEHHHHGGGHHHHHTTSCEEEECCCTTCHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCCCEEEEeccchHHHHHHhhcCCcEEEeccCcccHHHHHHHHHHHhCchH
Confidence 35578899999998766666666777777777765433 456888888888643
No 53
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=26.07 E-value=79 Score=30.96 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=33.3
Q ss_pred HHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEec---------C--HHHHHHHHHHhCCe
Q 009082 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS---------S--KFELRRFCRTTGAV 333 (544)
Q Consensus 282 v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v---------~--~~~le~Ia~~tGa~ 333 (544)
+|+|..++++|||....-.+...+.+.+.||.++-.- . .+.++.++.++|-.
T Consensus 89 ~E~Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 4557788999999875433355566777666555321 1 35677788888764
No 54
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=25.02 E-value=1.4e+02 Score=23.43 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHH
Q 009082 279 EGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 279 ~~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
++..+.|.+-.+.+||.+.+.++... .++.+++|.++...++.+|-..+
T Consensus 24 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~ 76 (101)
T 3on1_A 24 EQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLGRAI 76 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHh
Confidence 35556667777899999999988543 45678999999887777765544
No 55
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=24.57 E-value=1.8e+02 Score=22.80 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCcEEEeCCccChHHH----HHHHHCCeEEEEecCHHHHHHHH
Q 009082 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 280 ~~v~~i~~~~v~lVi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
...+.|.+-.+.+||.+.+.++... +++...+|.++...++.+|-..+
T Consensus 26 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG~A~ 77 (101)
T 3v7q_A 26 LVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLGRSI 77 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHT
T ss_pred hhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeechHHHHHhhh
Confidence 4555667777899999999988543 45678999999887777665443
No 56
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=23.70 E-value=1.1e+02 Score=25.85 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCcEEEeCCccChH-----HHHHHHHCCeEEEEecCHHHHHHHH
Q 009082 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFC 327 (544)
Q Consensus 279 ~~~v~~i~~~~v~lVi~~~~i~~~-----~l~~l~~~~I~vv~~v~~~~le~Ia 327 (544)
+..++.|.+-.+.+||.+.++++. ...+|.+.||.++...++.+|-+.+
T Consensus 38 ~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~ 91 (134)
T 2ale_A 38 NEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRAC 91 (134)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred hHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHh
Confidence 455666677778899999988884 3467788999988877776554433
Done!