BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009084
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 10/131 (7%)
Query: 156 LQSLPE-LPLCLKSLELRDCKMLQSLPALPLCLESLNLTGC-NMLRSLPALPLCLESLNL 213
L SLP+ LP + LE+ ++ SLP LP LE L+ C N L +LP LP L+ L++
Sbjct: 71 LSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLD--ACDNRLSTLPELPASLKHLDV 127
Query: 214 TGCNMLRSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQE 273
N L LPELP L+Y+ D N L LPEL L+ L+ N N+L LPE+P L+
Sbjct: 128 DN-NQLTXLPELPALLEYIN-ADNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPESLEA 184
Query: 274 LDAS--VLETL 282
LD S +LE+L
Sbjct: 185 LDVSTNLLESL 195
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 104 ISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELP 163
I+ +A++ +P+ A L L + LPAS+K L D L LPELP
Sbjct: 87 ITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDV-------DNNQLTXLPELP 139
Query: 164 LCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLP 223
L+ + D L LP LP LE L++ N L LP LP LE+L+++ N+L SLP
Sbjct: 140 ALLEYINA-DNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPESLEALDVS-TNLLESLP 196
Query: 224 ELPL 227
+P+
Sbjct: 197 AVPV 200
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 188 ESLNLTGCNMLRSLPALPLCL----ESLNLTGCNMLRSLPE-LPLCLKYLYLGDCNMLRS 242
E L G N ++ L CL L L N L SLP+ LP + L + N L S
Sbjct: 37 EKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLPPQITVLEITQ-NALIS 94
Query: 243 LPELSLCLQSLNAWNC-NRLQSLPEIPSCLQELD 275
LPEL L+ L+A C NRL +LPE+P+ L+ LD
Sbjct: 95 LPELPASLEYLDA--CDNRLSTLPELPASLKHLD 126
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 127/274 (46%), Gaps = 34/274 (12%)
Query: 9 LGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSV 68
LG +++ ELP E+L V C+ L +LP+ +LKSL + A+S LP
Sbjct: 81 LGLSSLPELPPHLESL-------VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP-- 131
Query: 69 ADSNVLGILDFSSCKXXXXXXXXXXXXXXXXXXXRISYSAVMEIPQEIACLSSLTGLHLS 128
+L L S+ + S + ++P SL +
Sbjct: 132 ----LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP------PSLEFIAAG 181
Query: 129 GNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLE-----LRDCKMLQSLPAL 183
N E LP ++ L L +++ D L+ LP+LPL L+S+ L + LQ+LP L
Sbjct: 182 NNQLEELP-ELQNLPFLTAIYA-DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239
Query: 184 PLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELPLCLKYLYLGDCNMLRSL 243
N+L++LP LP LE+LN+ N L LPELP L +L + + N+ L
Sbjct: 240 TTIY-----ADNNLLKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVSE-NIFSGL 292
Query: 244 PELSLCLQSLNAWNCNRLQSLPEIPSCLQELDAS 277
EL L LNA + N ++SL ++P L+EL+ S
Sbjct: 293 SELPPNLYYLNA-SSNEIRSLCDLPPSLEELNVS 325
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 122 LTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSL-----ELRDCKM 176
L L +S N E LP ++ S L+ + + D L+ LP+LP L+ + +L +
Sbjct: 133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDV-DNNSLKKLPDLPPSLEFIAAGNNQLEELPE 190
Query: 177 LQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELP-LCLKYLYLG 235
LQ+LP L N L+ LP LPL LES+ + G N+L LPEL L
Sbjct: 191 LQNLPFLTAIY-----ADNNSLKKLPDLPLSLESI-VAGNNILEELPELQNLPFLTTIYA 244
Query: 236 DCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELDAS--VLETLSKPSPDL 289
D N+L++LP+L L++LN + N L LPE+P L LD S + LS+ P+L
Sbjct: 245 DNNLLKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 156 LQSLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTG 215
L SLP LP L++LE+ L SLP LP L L++ N L LPALP L L + G
Sbjct: 73 LTSLPALPPELRTLEV-SGNQLTSLPVLPPGLLELSIF-SNPLTHLPALPSGLCKLWIFG 130
Query: 216 CNMLRSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELD 275
N L SLP LP L+ L + D N L SLP L L L A+N N+L SLP +PS LQEL
Sbjct: 131 -NQLTSLPVLPPGLQELSVSD-NQLASLPALPSELCKLWAYN-NQLTSLPMLPSGLQELS 187
Query: 276 ASVLETLSKPS 286
S + S P+
Sbjct: 188 VSDNQLASLPT 198
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 94/183 (51%), Gaps = 34/183 (18%)
Query: 118 CL-SSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLELRD--- 173
CL + +T L + NN SLPA +L R+L + + L SLP LP L L +
Sbjct: 58 CLPAHITTLVIPDNNLTSLPALPPEL---RTLEVSGNQ-LTSLPVLPPGLLELSIFSNPL 113
Query: 174 ----------CKM------LQSLPALPLCLESLNLTGCNMLRSLPALP--LC-LESLNLT 214
CK+ L SLP LP L+ L+++ N L SLPALP LC L + N
Sbjct: 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD-NQLASLPALPSELCKLWAYN-- 170
Query: 215 GCNMLRSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQEL 274
N L SLP LP L+ L + D N L SLP L L L A+N NRL SLP +PS L+EL
Sbjct: 171 --NQLTSLPMLPSGLQELSVSD-NQLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKEL 226
Query: 275 DAS 277
S
Sbjct: 227 IVS 229
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 91/175 (52%), Gaps = 27/175 (15%)
Query: 122 LTGLHLSGNNFESLPA--------SI--KQLSRLRSLHLEDCKM------LQSLPELPLC 165
L L +SGN SLP SI L+ L +L CK+ L SLP LP
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142
Query: 166 LKSLELRDCKMLQSLPALP--LC-LESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSL 222
L+ L + D + L SLPALP LC L + N N L SLP LP L+ L+++ N L SL
Sbjct: 143 LQELSVSDNQ-LASLPALPSELCKLWAYN----NQLTSLPMLPSGLQELSVSD-NQLASL 196
Query: 223 PELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELDAS 277
P LP L L+ + N L SLP L L+ L + NRL SLP +PS L+EL S
Sbjct: 197 PTLPSELYKLWAYN-NRLTSLPALPSGLKELIV-SGNRLTSLPVLPSELKELMVS 249
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 77/171 (45%), Gaps = 41/171 (23%)
Query: 117 ACLSSLTGLHLSGNNFESLPA----------SIKQLSRLRSLHLEDCKM------LQSLP 160
A S L L + GN SLP S QL+ L +L E CK+ L SLP
Sbjct: 118 ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP 177
Query: 161 ELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLR 220
LP L+ L + D + L SLP LP L L N L SLPALP L+ L ++G N L
Sbjct: 178 MLPSGLQELSVSDNQ-LASLPTLPSELYKL-WAYNNRLTSLPALPSGLKELIVSG-NRLT 234
Query: 221 SLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCL 271
SLP LP LK L + + NRL SLP +PS L
Sbjct: 235 SLPVLPSELKELMV----------------------SGNRLTSLPMLPSGL 263
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHIS-AAGS 59
+ HL+ + + ELP + + GLE L + + L LP +I +L L +S A
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACP 161
Query: 60 AISQLPSSVADSNV----LGILDFSSCKXXXXXXXXXXXXXXXXXXXRISYSAVMEIPQE 115
+++LP +A ++ G+++ S R+ ++ + +P
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSL--------------------RLEWTGIRSLPAS 201
Query: 116 IACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPEL---PLCLKSLELR 172
IA L +L L + + +L +I L +L L L C L++ P + LK L L+
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 173 DCKMLQSLP---ALPLCLESLNLTGCNMLRSLPAL 204
DC L +LP LE L+L GC L LP+L
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 25/196 (12%)
Query: 104 ISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELP 163
I + + E+P + L L L+ N +LPASI L+RLR L + C L LPE P
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE-P 169
Query: 164 LC-------------LKSLELRDCKMLQSLPALPLCLE---SLNLTGCNMLRSLPA---L 204
L L+SL L + ++SLPA L+ SL + + PA L
Sbjct: 170 LASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228
Query: 205 PLCLESLNLTGCNMLRSLPEL---PLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRL 261
P LE L+L GC LR+ P + LK L L DC+ L +LP L L +
Sbjct: 229 P-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 262 QSLPEIPSCLQELDAS 277
+L +PS + +L A+
Sbjct: 288 VNLSRLPSLIAQLPAN 303
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 109 VMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLP-ELPLC-- 165
+ I I LT L+L+GN+ LPA IK LS LR L L + L SLP EL C
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294
Query: 166 LKSLELRDCKMLQSLP 181
LK D M+ +LP
Sbjct: 295 LKYFYFFD-NMVTTLP 309
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAI 61
+ L R+YL ++TELP+ +NL L VL + ++L LP +G+ L + + +
Sbjct: 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNMV 305
Query: 62 SQLP 65
+ LP
Sbjct: 306 TTLP 309
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 107 SAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLP 160
+++ E+P EI LS+L L LS N SLPA + +L+ + D M+ +LP
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLP 309
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 1 MEHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGS 59
+ L + LG +T LPS+ F+ L L+ LF+ C+KL +LP I L L H++ +
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQN 145
Query: 60 AISQLPSSVAD 70
+ +P D
Sbjct: 146 QLKSIPHGAFD 156
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 26/147 (17%)
Query: 157 QSLPELPLCLKSLELRDC--------KMLQSLPALPLCLESLNLTGCN--------MLRS 200
Q+ LP + SL LR +++Q L A+P + SLNL G N + +
Sbjct: 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190
Query: 201 LPALPLCLESLNLTGCNM-LRSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCN 259
L ++P + SL+L+ + L+S E L Y++ N + S L+LCL L+ +
Sbjct: 191 LASIPASVTSLDLSANLLGLKSYAE----LAYIFSSIPNHVVS---LNLCLNCLHGPSLE 243
Query: 260 RLQSLPEIPSCLQE--LDASVLETLSK 284
L+ L + LQ LD +++ SK
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNXSK 270
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 132 FESLPASIKQLS-RLRSLH-LEDCKMLQSLPELPLCLKSLEL--------RDCKMLQSLP 181
F S+P + L L +L+ + +++Q+ P + SL L +++Q L
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 182 ALPLCLESLNLTGC--------NMLRSLPALPLCLESLNL 213
A+P + SLNL+G ++++L A+P + L+L
Sbjct: 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 119 LSSLTGLHLSGNNFESLPASI-KQLSRLRSLHLEDCKMLQSLP----ELPLCLKSLELRD 173
L+SLT L+L GN +SLP + +L+ L L+L LQSLP + LK L L +
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 174 CKMLQSLP 181
LQSLP
Sbjct: 109 TNQLQSLP 116
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 111 EIPQEIACLSSLTGLHLSGNNFE-SLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSL 169
+IP ++ S L LHLS N ++P+S+ LS+LR L L + +P+ + +K+L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 170 E 170
E
Sbjct: 469 E 469
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 38/132 (28%)
Query: 6 RIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLK-----SLGHISAAGSA 60
R+Y G T+ T F+N + L + +P IG++ +LGH +GS
Sbjct: 618 RVYGGHTSPT-----FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS- 671
Query: 61 ISQLPSSVADSNVLGILDFSSCKXXXXXXXXXXXXXXXXXXXRISYSAVMEIPQEIACLS 120
+P V D L ILD SS K IPQ ++ L+
Sbjct: 672 ---IPDEVGDLRGLNILDLSSNKLDG------------------------RIPQAMSALT 704
Query: 121 SLTGLHLSGNNF 132
LT + LS NN
Sbjct: 705 MLTEIDLSNNNL 716
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 111 EIPQEIACLSSLTGLHLSGNNFE-SLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSL 169
+IP ++ S L LHLS N ++P+S+ LS+LR L L + +P+ + +K+L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 170 E 170
E
Sbjct: 466 E 466
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 38/132 (28%)
Query: 6 RIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLK-----SLGHISAAGSA 60
R+Y G T+ T F+N + L + +P IG++ +LGH +GS
Sbjct: 615 RVYGGHTSPT-----FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS- 668
Query: 61 ISQLPSSVADSNVLGILDFSSCKXXXXXXXXXXXXXXXXXXXRISYSAVMEIPQEIACLS 120
+P V D L ILD SS K IPQ ++ L+
Sbjct: 669 ---IPDEVGDLRGLNILDLSSNKLDG------------------------RIPQAMSALT 701
Query: 121 SLTGLHLSGNNF 132
LT + LS NN
Sbjct: 702 MLTEIDLSNNNL 713
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 17 LPSSFENLPGLEVLFVEDCSKL-DKLPDNIGNLKSLGHISAAGSAIS-QLPSSVADSNVL 74
+PSS NLP L L++ + L +P I L L ++ + +S +P ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 75 GILDFSSCKXXXXXXXXXXXXXXXXXXXRISYSAVM-EIPQEIACLSSLTGLHLSGNNFE 133
LDF SY+A+ +P I+ L +L G+ GN
Sbjct: 128 VTLDF-------------------------SYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 134 -SLPASIKQLSRL-RSLHLEDCKMLQSLP 160
++P S S+L S+ + ++ +P
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 119 LSSLTGLHLSGNNFESLPASI-KQLSRLRSLHLEDCKMLQSLP 160
L+ L L+L GN +SLP+ + +L++L+ L L + LQS+P
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 119 LSSLTGLHLSGNNFESLPASI-KQLSRLRSLHLEDCKMLQSLP 160
L+ L L+L GN +SLP+ + +L++L+ L L + LQS+P
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 27/150 (18%)
Query: 119 LSSLTGLHLSGNNFESLPASI-KQLSRLRSLHLEDCKMLQSLPELPL----CLKSLELRD 173
L++LT L L+GN +SLP + +L+ L+ L L + LQSLP+ L L L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 174 CKMLQSLPALPL----CLESLNLTGCNMLRSLPALPL----CLESLNLTGCNMLRSLPEL 225
LQSLP L L+L+ N L+SLP L+ L L N L+S+P+
Sbjct: 143 -NQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDG 199
Query: 226 PL----CLKYLYLGD------CNMLRSLPE 245
L+Y++L D C +R L E
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 229
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 119 LSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKMLQSLPELPL----CLKSLELRD 173
LS L L L N ES+P+ + ++ LR L L + K L + E L+ L L
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 174 CKMLQSLPAL-PLC-LESLNLTGCNM-------------LRSLPALPLCLESLNLTGCNM 218
C L+ +P L PL L+ L+L+G ++ L+ L + ++ + +
Sbjct: 195 CN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253
Query: 219 LRSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCN 259
L+SL E+ L L L ++ L L N WNCN
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 119 LSSLTGLHLSGNNFESLPASI-KQLSRLRSLHLEDCKMLQSLPE 161
L++LT L L+GN +SLP + +L+ L+ L L + + LQSLP+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPD 126
>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy
pdb|2FW2|B Chain B, Catalytic Domain Of Cdy
pdb|2FW2|C Chain C, Catalytic Domain Of Cdy
pdb|2FW2|D Chain D, Catalytic Domain Of Cdy
pdb|2FW2|E Chain E, Catalytic Domain Of Cdy
pdb|2FW2|F Chain F, Catalytic Domain Of Cdy
Length = 260
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 117 ACLSSLTG-LHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLELRDCK 175
AC L + L+G + + IK+L+ ++ LE+CK L + L L+ R+C+
Sbjct: 176 ACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRC-NIKLELEQANERECE 234
Query: 176 MLQSLPALPLCLESL 190
+L+ + + +ES+
Sbjct: 235 VLRKIWSSAQGIESM 249
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 143 SRLRSLHLEDCKMLQSLPELP-----LCLKSLELRDC 174
SRL+ L LED K+ ++P LP L L SL LR+
Sbjct: 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,369,485
Number of Sequences: 62578
Number of extensions: 597662
Number of successful extensions: 1390
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 51
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)