Query 009084
Match_columns 544
No_of_seqs 599 out of 3563
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 20:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.6E-45 5.6E-50 424.0 36.4 492 2-540 611-1144(1153)
2 PLN03210 Resistant to P. syrin 99.9 4.8E-24 1E-28 247.4 24.8 302 1-315 557-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 4.7E-24 1E-28 246.4 19.7 150 2-154 118-271 (968)
4 PLN00113 leucine-rich repeat r 99.9 7.1E-24 1.5E-28 244.9 19.0 218 1-219 139-369 (968)
5 PRK15387 E3 ubiquitin-protein 99.8 9.8E-20 2.1E-24 197.7 18.5 251 4-280 203-456 (788)
6 KOG0444 Cytoskeletal regulator 99.8 2.4E-22 5.2E-27 203.1 -4.3 284 2-290 55-383 (1255)
7 PRK15387 E3 ubiquitin-protein 99.8 4.6E-19 1E-23 192.5 17.8 256 25-310 201-456 (788)
8 KOG4194 Membrane glycoprotein 99.8 2.3E-20 4.9E-25 187.9 4.4 229 5-237 81-351 (873)
9 KOG0444 Cytoskeletal regulator 99.8 1.4E-20 3E-25 190.5 -4.1 259 1-265 102-379 (1255)
10 KOG4194 Membrane glycoprotein 99.7 1.1E-18 2.4E-23 175.8 1.2 242 3-247 150-436 (873)
11 PRK15370 E3 ubiquitin-protein 99.7 7E-17 1.5E-21 176.6 12.2 223 3-245 179-405 (754)
12 KOG0472 Leucine-rich repeat pr 99.7 1.1E-19 2.3E-24 175.8 -9.5 229 3-238 69-308 (565)
13 PRK15370 E3 ubiquitin-protein 99.7 1E-16 2.2E-21 175.3 10.4 220 2-240 199-428 (754)
14 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.7E-23 150.0 -5.6 152 1-154 32-184 (264)
15 KOG0618 Serine/threonine phosp 99.6 9.9E-18 2.1E-22 177.4 -4.0 181 97-281 241-488 (1081)
16 KOG0472 Leucine-rich repeat pr 99.6 2.1E-18 4.5E-23 166.9 -9.8 240 3-249 46-296 (565)
17 KOG0617 Ras suppressor protein 99.5 6.1E-16 1.3E-20 133.5 -4.5 139 1-142 55-195 (264)
18 KOG4658 Apoptotic ATPase [Sign 99.4 4.5E-14 9.7E-19 157.1 4.8 273 2-287 545-847 (889)
19 cd00116 LRR_RI Leucine-rich re 99.4 1.8E-13 3.9E-18 137.9 2.5 235 6-241 2-292 (319)
20 KOG0618 Serine/threonine phosp 99.3 7.7E-14 1.7E-18 148.3 -1.3 248 27-286 47-303 (1081)
21 cd00116 LRR_RI Leucine-rich re 99.3 2.6E-13 5.6E-18 136.7 1.2 236 2-238 23-318 (319)
22 KOG4658 Apoptotic ATPase [Sign 99.2 1.4E-11 3E-16 137.4 6.3 274 1-287 570-865 (889)
23 KOG4237 Extracellular matrix p 99.2 3.1E-13 6.7E-18 131.2 -7.0 142 10-154 54-199 (498)
24 KOG4237 Extracellular matrix p 99.2 1.6E-12 3.4E-17 126.4 -2.3 253 3-257 68-473 (498)
25 PRK15386 type III secretion pr 99.1 4.2E-10 9.2E-15 113.3 11.6 163 141-317 50-218 (426)
26 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.4E-16 123.8 -2.5 146 4-154 100-245 (722)
27 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 4.9E-15 103.2 4.3 134 12-150 7-147 (175)
28 COG4886 Leucine-rich repeat (L 99.0 3.6E-10 7.9E-15 117.5 5.0 193 7-203 98-295 (394)
29 COG4886 Leucine-rich repeat (L 99.0 2.8E-10 6.2E-15 118.3 3.0 176 2-181 116-294 (394)
30 KOG0532 Leucine-rich repeat (L 98.9 8.9E-11 1.9E-15 119.2 -3.5 186 6-197 54-246 (722)
31 PRK15386 type III secretion pr 98.8 2.4E-08 5.2E-13 100.8 11.5 55 227-282 156-213 (426)
32 KOG4341 F-box protein containi 98.8 9.5E-11 2.1E-15 115.0 -6.0 273 26-316 139-443 (483)
33 PF14580 LRR_9: Leucine-rich r 98.8 4.9E-09 1.1E-13 94.5 4.9 114 38-156 9-126 (175)
34 KOG1259 Nischarin, modulator o 98.8 4.9E-10 1.1E-14 105.5 -1.7 126 24-154 283-410 (490)
35 KOG3207 Beta-tubulin folding c 98.8 1.1E-09 2.3E-14 108.3 -0.4 132 23-155 119-258 (505)
36 KOG3207 Beta-tubulin folding c 98.7 2.2E-09 4.8E-14 106.1 -0.6 198 1-198 120-339 (505)
37 KOG1909 Ran GTPase-activating 98.7 1.6E-09 3.4E-14 104.4 -2.2 153 1-155 29-225 (382)
38 KOG1259 Nischarin, modulator o 98.6 5.4E-09 1.2E-13 98.6 -1.9 126 45-175 280-410 (490)
39 PLN03150 hypothetical protein; 98.5 1.9E-07 4E-12 102.3 7.8 105 26-131 419-526 (623)
40 PLN03150 hypothetical protein; 98.5 3.4E-07 7.3E-12 100.2 8.8 107 73-180 419-531 (623)
41 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.4E-12 68.4 3.7 59 2-61 1-61 (61)
42 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4.1E-13 95.0 -5.0 132 26-157 186-327 (419)
43 KOG4341 F-box protein containi 98.3 1.2E-08 2.6E-13 100.5 -6.7 267 3-286 139-443 (483)
44 KOG1909 Ran GTPase-activating 98.3 1.9E-07 4.1E-12 90.3 1.4 153 2-155 58-253 (382)
45 KOG0531 Protein phosphatase 1, 98.3 6.3E-08 1.4E-12 101.2 -2.0 189 23-216 70-265 (414)
46 PF13855 LRR_8: Leucine rich r 98.3 9E-07 1.9E-11 65.4 3.9 55 99-153 3-59 (61)
47 KOG2120 SCF ubiquitin ligase, 98.3 1.6E-08 3.4E-13 95.5 -7.0 154 3-156 186-351 (419)
48 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.3E-11 92.0 -2.4 149 1-156 94-245 (414)
49 KOG1859 Leucine-rich repeat pr 97.9 1.5E-07 3.3E-12 98.6 -8.4 126 3-133 165-292 (1096)
50 KOG3665 ZYG-1-like serine/thre 97.8 7.1E-06 1.5E-10 89.9 2.1 131 2-133 122-263 (699)
51 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.8E-10 53.4 3.6 39 98-136 2-40 (44)
52 KOG1859 Leucine-rich repeat pr 97.8 4.8E-07 1E-11 95.0 -7.6 101 50-154 165-265 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.7 3.5E-05 7.6E-10 52.5 3.6 39 50-89 2-40 (44)
54 KOG4579 Leucine-rich repeat (L 97.6 3.9E-06 8.4E-11 70.8 -2.8 57 97-153 77-133 (177)
55 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.7E-09 66.0 5.9 103 49-153 42-150 (233)
56 KOG4579 Leucine-rich repeat (L 97.6 4E-06 8.7E-11 70.7 -3.3 110 26-138 28-141 (177)
57 COG5238 RNA1 Ran GTPase-activa 97.6 1.7E-05 3.8E-10 74.4 0.4 153 1-155 29-226 (388)
58 KOG2982 Uncharacterized conser 97.5 7.1E-05 1.5E-09 71.3 2.8 80 2-82 71-156 (418)
59 KOG2982 Uncharacterized conser 97.4 6.8E-05 1.5E-09 71.4 2.0 171 71-243 70-265 (418)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.5E-09 80.6 2.4 124 48-173 121-259 (699)
61 KOG1644 U2-associated snRNP A' 97.2 0.0005 1.1E-08 62.2 5.1 121 5-130 22-150 (233)
62 KOG2739 Leucine-rich acidic nu 96.9 0.00044 9.5E-09 65.1 1.9 114 21-138 39-161 (260)
63 KOG1947 Leucine rich repeat pr 96.9 9.1E-05 2E-09 78.9 -3.4 34 24-57 187-222 (482)
64 COG5238 RNA1 Ran GTPase-activa 96.7 0.0021 4.5E-08 60.8 4.5 152 2-154 58-253 (388)
65 KOG2739 Leucine-rich acidic nu 96.4 0.0022 4.7E-08 60.5 2.5 108 45-154 39-154 (260)
66 KOG1947 Leucine rich repeat pr 96.3 0.00035 7.5E-09 74.4 -3.6 108 2-109 188-307 (482)
67 KOG2123 Uncharacterized conser 96.1 0.00042 9.1E-09 65.6 -3.4 85 71-159 18-104 (388)
68 KOG2123 Uncharacterized conser 96.0 0.00045 9.7E-09 65.4 -4.1 99 24-126 18-123 (388)
69 PF13306 LRR_5: Leucine rich r 95.9 0.029 6.3E-07 47.8 7.0 117 21-145 8-128 (129)
70 PF13306 LRR_5: Leucine rich r 95.7 0.043 9.2E-07 46.8 7.3 102 45-152 8-112 (129)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.4E-07 33.5 0.7 20 3-22 1-20 (22)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.4E-07 33.5 0.7 20 121-140 1-20 (22)
73 PF13504 LRR_7: Leucine rich r 92.6 0.087 1.9E-06 27.7 1.5 16 3-18 2-17 (17)
74 PF13504 LRR_7: Leucine rich r 92.5 0.081 1.7E-06 27.8 1.3 15 121-135 2-16 (17)
75 KOG0473 Leucine-rich repeat pr 89.2 0.014 3E-07 54.2 -5.9 87 21-110 38-124 (326)
76 smart00369 LRR_TYP Leucine-ric 87.8 0.41 9E-06 28.1 1.8 20 1-20 1-20 (26)
77 smart00370 LRR Leucine-rich re 87.8 0.41 9E-06 28.1 1.8 20 1-20 1-20 (26)
78 smart00370 LRR Leucine-rich re 86.6 0.53 1.2E-05 27.6 1.8 21 119-139 1-21 (26)
79 smart00369 LRR_TYP Leucine-ric 86.6 0.53 1.2E-05 27.6 1.8 21 119-139 1-21 (26)
80 KOG3864 Uncharacterized conser 84.1 0.18 4E-06 46.0 -1.5 62 68-129 121-185 (221)
81 KOG4308 LRR-containing protein 83.2 0.016 3.5E-07 61.2 -10.1 60 96-155 203-274 (478)
82 KOG3864 Uncharacterized conser 82.2 0.37 8E-06 44.0 -0.3 80 73-153 102-186 (221)
83 KOG0473 Leucine-rich repeat pr 77.9 0.047 1E-06 50.7 -7.5 87 45-133 38-124 (326)
84 KOG4308 LRR-containing protein 75.4 0.017 3.6E-07 61.0 -12.9 128 27-155 89-245 (478)
85 smart00364 LRR_BAC Leucine-ric 69.7 2.9 6.2E-05 24.7 1.2 18 2-19 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 67.1 4.6 0.0001 23.8 1.7 18 1-18 1-18 (26)
87 smart00367 LRR_CC Leucine-rich 63.9 4.7 0.0001 23.5 1.4 14 270-283 3-16 (26)
88 PF13516 LRR_6: Leucine Rich r 56.9 4.9 0.00011 22.9 0.6 14 2-15 2-15 (24)
89 PF07725 LRR_3: Leucine Rich R 53.3 9.1 0.0002 21.0 1.2 19 3-21 1-19 (20)
90 smart00368 LRR_RI Leucine rich 42.8 19 0.00041 21.5 1.6 14 2-15 2-15 (28)
91 KOG3763 mRNA export factor TAP 41.3 14 0.00031 39.1 1.5 64 95-159 216-286 (585)
92 KOG3763 mRNA export factor TAP 30.6 18 0.00039 38.4 0.3 63 69-133 215-283 (585)
93 PF05725 FNIP: FNIP Repeat; I 21.0 1.5E+02 0.0032 19.7 3.2 12 266-277 31-42 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-45 Score=424.02 Aligned_cols=492 Identities=23% Similarity=0.315 Sum_probs=362.5
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeec-CCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAG-SAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~-~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
++|++|+|+++.++.+|.++..+++|+.|+|++|..++.+|. ++.+++|+.|+|++ +.+..+|..++++++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 578889998888888888888899999999999888888886 78899999999954 5677899999999999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC--
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ-- 157 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-- 157 (544)
+|..++.+|.. .++++|+.|++++|.... +|.. ..+|+.|++++|.++.+|..+ .+++|+.|.+.++....
T Consensus 690 ~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 690 RCENLEILPTG--INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCcCccCCc--CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhcc
Confidence 99989999885 378899999999986544 6543 468899999999999998765 67889988888754211
Q ss_pred ----CCC----CCCCCCCEEEEecCCCCCcCCCC---CCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCC
Q 009084 158 ----SLP----ELPLCLKSLELRDCKMLQSLPAL---PLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPE 224 (544)
Q Consensus 158 ----~lp----~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~ 224 (544)
.++ ..+++|+.|++++|..+..+|.. +.+|+.|+|++|..++.+|.. +++|+.|+|++|..+..+|.
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 111 23578999999999999988865 567899999999999998876 89999999999999999999
Q ss_pred CCCCCCEEeEecCCCCCCCCcc---cCCCCeeeeccCCCCCCCCCCC---CCccEEeccCCCCCCCCCccccccCCCCC-
Q 009084 225 LPLCLKYLYLGDCNMLRSLPEL---SLCLQSLNAWNCNRLQSLPEIP---SCLQELDASVLETLSKPSPDLLQWAPGSL- 297 (544)
Q Consensus 225 ~~~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~~lp---~sL~~L~i~~C~~L~~~~~~~~~~~~~~~- 297 (544)
...+|+.|+|++| .++.+|.. +++|+.|++.+|++++.+|..+ ++|+.|++++|++|+.++...........
T Consensus 844 ~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~ 922 (1153)
T PLN03210 844 ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMAT 922 (1153)
T ss_pred cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhc
Confidence 9999999999987 45677754 4779999999999999998644 57888899999999987643211100000
Q ss_pred ------CCCCeEEEEecCCCchhHhhhhhhhhhHHHHhhhhhhhhhhhhhHHHHhhhhcccceEEEccCCCCCccceecC
Q 009084 298 ------ESQPIYFGFTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEKAINQKISELRGSLIVLPGSEIPDWFSNQS 371 (544)
Q Consensus 298 ------~~~~~~l~~~~C~~L~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~Pg~~iP~wf~~~~ 371 (544)
-.....+.|.+|++|++.+. ++. + .....+++||.++|+||.||+
T Consensus 923 ~n~~~~~p~~~~l~f~nC~~L~~~a~--l~~------~---------------------~~~~~~~l~g~evp~~f~hr~ 973 (1153)
T PLN03210 923 DNIHSKLPSTVCINFINCFNLDQEAL--LQQ------Q---------------------SIFKQLILSGEEVPSYFTHRT 973 (1153)
T ss_pred ccccccCCchhccccccccCCCchhh--hcc------c---------------------ccceEEECCCccCchhccCCc
Confidence 00124568999999988652 110 0 022468899999999999999
Q ss_pred CCceEE-EeCCCCccccCccceEEEEEccCCCccC--CcceeEEEEEEEecCCCCccccceeEeeecccccccccCCCeE
Q 009084 372 SGSSIC-IQLPPHSFCRNLIGFAFCAVPDLKQVCS--DCFRYFYVKCQLDLEIKTLSETKHVDLGYNSRFIEDHIDSDHV 448 (544)
Q Consensus 372 ~g~si~-i~lp~~~~~~~~~gf~~c~v~~~~~~~~--~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdH~ 448 (544)
+|++++ |++|+.|+...|.||++|+|+++..... ..+ ++.|.|+++++.|+..+.......| ......+|+
T Consensus 974 ~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l 1047 (1153)
T PLN03210 974 TGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSF-DIQVCCRFIDRLGNHFDSPYQPHVF-----SVTKKGSHL 1047 (1153)
T ss_pred ccceeeeeccCCcccCCCccceEEEEEEecCccccCCCce-eEEEEEEEECCCCCccccCCCceeE-----eeeccccce
Confidence 999999 9999999988899999999998876543 234 6889999998877632110000001 012346677
Q ss_pred EEEeeecccc------CCCCCcceeeEEEEEeccCCceeEEEeeeeEeecCCCCCCCCceeEEEeeee-eccccee--cc
Q 009084 449 ILGFKPCLNV------GFPDGYHHTTATFKFFAERNLKGIKRCGVCPVYANPSETKDNTFTINFATEV-WKLDDLS--SA 519 (544)
Q Consensus 449 ~~~~~~~~~~------~~~~~~~~~~~~f~f~~~~~~~~vk~cGv~~i~~~~~~~~~~~f~~~~~~~~-~~~~~~~--~~ 519 (544)
++|... ... ..+..|+|+++.|+|...+..++||+||||++|++++.+... ..-+.++. ...++.+ .+
T Consensus 1048 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1124 (1153)
T PLN03210 1048 VIFDCC-FPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLNNTL--PNVEEADDDNPVNGSEHWED 1124 (1153)
T ss_pred EEeccc-ccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcccCC--Cccccccccccccccccccc
Confidence 766432 111 112347788899998776666899999999999877654322 11111111 1122222 22
Q ss_pred CCCCCccccCCCccccccccc
Q 009084 520 SGTSDVEELEPSPKRICRANQ 540 (544)
Q Consensus 520 ~~~~~~ee~~~~~kr~~~~~~ 540 (544)
.|+++ .|++.++||++...+
T Consensus 1125 ~~~~~-~~~~~~~~~~~~~~~ 1144 (1153)
T PLN03210 1125 CEDSA-LERESERTKDREMRD 1144 (1153)
T ss_pred cCCcc-hhccccccchhhhhh
Confidence 34444 456889999887544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=4.8e-24 Score=247.39 Aligned_cols=302 Identities=27% Similarity=0.403 Sum_probs=236.4
Q ss_pred CCCCcEEEecCCCC------c-ccCcccCCCC-CccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCC
Q 009084 1 MEHLKRIYLGRTAI------T-ELPSSFENLP-GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSN 72 (544)
Q Consensus 1 l~~L~~L~L~~~~i------~-~lp~~l~~l~-~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~ 72 (544)
|++|+.|.+..+.. . .+|..+..++ +|+.|.+.++ .++.+|..+ ...+|++|++.++.+..+|..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 56788888865432 2 4677666664 6999999885 678888876 57899999999999999999999999
Q ss_pred CccEEEEecCCCCCccChhhhcCCCCCCEEEEeccC-CCCCChhccCCCCccEEEEeCc-cCCCCchhhcCCCCccEEEe
Q 009084 73 VLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSA-VMEIPQEIACLSSLTGLHLSGN-NFESLPASIKQLSRLRSLHL 150 (544)
Q Consensus 73 ~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~L 150 (544)
+|+.|++++|..++.+|. +..+++|+.|++++|. +.++|..++.+++|+.|++++| .++.+|..+ ++++|+.|++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 999999999888888887 7889999999999986 4559999999999999999997 677888766 7899999999
Q ss_pred cCCCCCCCCCCCCCCCCEEEEecCCCCCcCCCC---------------------------------CCCccEEEEeCCCC
Q 009084 151 EDCKMLQSLPELPLCLKSLELRDCKMLQSLPAL---------------------------------PLCLESLNLTGCNM 197 (544)
Q Consensus 151 ~~~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~---------------------------------~~~L~~L~Ls~c~~ 197 (544)
++|..++.+|..+.+|+.|++.++. ++.+|.. +++|+.|+|++|+.
T Consensus 712 sgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 712 SGCSRLKSFPDISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred CCCCCccccccccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 9999888888888889988887654 4444432 23567777777777
Q ss_pred CCCCCCC---CCCccEEEEeCCCCCCcCCCC--CCCCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCCCCCC---CCC
Q 009084 198 LRSLPAL---PLCLESLNLTGCNMLRSLPEL--PLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPE---IPS 269 (544)
Q Consensus 198 l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~--~~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~---lp~ 269 (544)
+..+|.. +++|+.|+|++|+.++.+|.. +++|+.|++++|..++.+|....+|+.|++.+ +.++.+|. -.+
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~i~~iP~si~~l~ 869 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TGIEEVPWWIEKFS 869 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCC-CCCccChHHHhcCC
Confidence 7777765 777888888888778777764 46778888888888877777777788888776 45555653 236
Q ss_pred CccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCCCchhH
Q 009084 270 CLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCLKLNGK 315 (544)
Q Consensus 270 sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~~L~~~ 315 (544)
+|+.|++++|.+|+.++...... ..+..+.+.+|.+|...
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L------~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKL------KHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccc------cCCCeeecCCCcccccc
Confidence 78999999999999987654332 23478899999998753
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4.7e-24 Score=246.36 Aligned_cols=150 Identities=29% Similarity=0.477 Sum_probs=69.5
Q ss_pred CCCcEEEecCCCCc-ccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCc-cCCccCCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAIT-ELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAIS-QLPSSVADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l 79 (544)
++|++|+|++|.++ .+|. +.+++|++|+|++|.....+|..++++++|++|++++|.+. .+|..++++++|++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45555555555554 2332 23444555555554443444444445555555555444443 34444444555555555
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCC-CCchhhcCCCCccEEEecCCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFE-SLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~L~~~~ 154 (544)
++|.....+|.. +.++++|+.|++++|.+.. +|..++.+++|++|++++|.+. .+|..++++++|+.|++++|.
T Consensus 196 ~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 196 ASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred cCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 444433334433 4444444444444444432 4444444444444444444443 344444444444444444443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=7.1e-24 Score=244.86 Aligned_cols=218 Identities=25% Similarity=0.371 Sum_probs=155.9
Q ss_pred CCCCcEEEecCCCCc-ccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCc-cCCccCCCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAIT-ELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAIS-QLPSSVADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~ 78 (544)
+++|++|+|++|.+. .+|..++++++|++|+|++|...+.+|..++++++|++|++++|.+. .+|..++++++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 467888888888887 67777888888888888888777778888888888888888888776 5777888888888888
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCC-CCchhhcCCCCccEEEecCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFE-SLPASIKQLSRLRSLHLEDCKML 156 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l 156 (544)
+++|.....+|.. +.++++|++|++++|.+.. +|..++.+++|+.|++++|.+. .+|.++.++++|+.|++++|...
T Consensus 219 L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 8888766667766 7788888888888887764 7777888888888888888776 56777777778888888777655
Q ss_pred CCCCCC---CCCCCEEEEecCCCCCcCCCC---CCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCC
Q 009084 157 QSLPEL---PLCLKSLELRDCKMLQSLPAL---PLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNML 219 (544)
Q Consensus 157 ~~lp~~---~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l 219 (544)
..+|.. .++|+.|+++++.....+|.. +++|+.|++++|...+.+|.. +++|+.|+|++|...
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 555543 356666666666544444432 345555666666555554443 445555555554433
No 5
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=9.8e-20 Score=197.73 Aligned_cols=251 Identities=34% Similarity=0.411 Sum_probs=192.5
Q ss_pred CcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCC
Q 009084 4 LKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCK 83 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~ 83 (544)
-..|++++++++.+|..+. ++|+.|++.+| .++.+|.. +++|++|++++|+++.+|.. .++|+.|++.+|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4578999999999998764 48899999985 67778863 57899999999999988853 4678889998876
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCCC
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELP 163 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~ 163 (544)
+..+|.. ..+|+.|++++|.+..+|.. +++|+.|++++|+++.+|.. ..+|+.|++++|. ++.+|..+
T Consensus 274 -L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~lp 341 (788)
T PRK15387 274 -LTHLPAL----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPTLP 341 (788)
T ss_pred -hhhhhhc----hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCc-cccccccc
Confidence 6666652 35788899999988888763 46899999999988888753 2467788888875 56678777
Q ss_pred CCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcCCCCCCCCCEEeEecCCCCCCC
Q 009084 164 LCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELPLCLKYLYLGDCNMLRSL 243 (544)
Q Consensus 164 ~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~~l~~l 243 (544)
.+|+.|++++ +.++.+|..+.+|+.|++++|.+. .+|....+|+.|+|++ +.+..+|..+.+|+.|++++|. ++.+
T Consensus 342 ~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~-N~Lt~LP~l~s~L~~LdLS~N~-LssI 417 (788)
T PRK15387 342 SGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSG-NRLTSLPVLPSELKELMVSGNR-LTSL 417 (788)
T ss_pred cccceEecCC-CccCCCCCCCcccceehhhccccc-cCcccccccceEEecC-CcccCCCCcccCCCEEEccCCc-CCCC
Confidence 8889999876 466778877788888888887654 5777777888888888 4677788777888888888876 4567
Q ss_pred CcccCCCCeeeeccCCCCCCCCC---CCCCccEEeccCCC
Q 009084 244 PELSLCLQSLNAWNCNRLQSLPE---IPSCLQELDASVLE 280 (544)
Q Consensus 244 p~~~~~L~~L~l~~c~~L~~l~~---lp~sL~~L~i~~C~ 280 (544)
|.....|+.|++.+ +.++.+|. -.++|+.|++++++
T Consensus 418 P~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 418 PMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred Ccchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 77666778888777 45666664 23577788888775
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.4e-22 Score=203.06 Aligned_cols=284 Identities=26% Similarity=0.343 Sum_probs=152.4
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCC-CccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKL-DKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
.+|+.|.+++|++..+...+..++.|+.++++.|+.- ..+|..+..+..|..|||++|+++++|..+...+++-.|+|+
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc
Confidence 3556666666666655555556666666666654221 235555666666666666666666666666666666666666
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCC--------------------------C
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFE--------------------------S 134 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~--------------------------~ 134 (544)
+|+ +..+|...+-++..|-.|+|++|.+..+|..+..+.+|++|.|++|.+. .
T Consensus 135 ~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 135 YNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred cCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc
Confidence 544 5556655555556666666666665555555555555555555555332 3
Q ss_pred CchhhcCCCCccEEEecCCCCCCCCCCC---CCCCCEEEEecCCCCCcCC---CCCCCccEEEEeCCCCCCCCCCC---C
Q 009084 135 LPASIKQLSRLRSLHLEDCKMLQSLPEL---PLCLKSLELRDCKMLQSLP---ALPLCLESLNLTGCNMLRSLPAL---P 205 (544)
Q Consensus 135 lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l~---~~~~~L~~L~Ls~c~~l~~l~~~---~ 205 (544)
+|.++..+.+|..++++.|. +..+|+. ..+|+.|+++++. ++.+. ....+|++|++|.|++ ..+|.. +
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchh-ccchHHHhhh
Confidence 34444444444444444332 2233322 1334444443331 11111 1123344444444433 233333 4
Q ss_pred CCccEEEEeCCCC-CCcCCCCCCCCCEEeEe--cCCCCCCCCccc---CCCCeeeeccCCCCCCCCC---CCCCccEEec
Q 009084 206 LCLESLNLTGCNM-LRSLPELPLCLKYLYLG--DCNMLRSLPELS---LCLQSLNAWNCNRLQSLPE---IPSCLQELDA 276 (544)
Q Consensus 206 ~~L~~L~Ls~c~~-l~~lp~~~~~L~~L~L~--~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~~---lp~sL~~L~i 276 (544)
+.|+.|.+.+|.. +.-+|.++++|..|..- .|+.++-+|+.+ ..|+.|.+. |++|..+|+ +.+.|+.|++
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeec
Confidence 4444444444221 33455555544444332 244566666655 336777665 577888886 5578999999
Q ss_pred cCCCCCCCCCcccc
Q 009084 277 SVLETLSKPSPDLL 290 (544)
Q Consensus 277 ~~C~~L~~~~~~~~ 290 (544)
...|+|..-|.+..
T Consensus 370 reNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 370 RENPNLVMPPKPND 383 (1255)
T ss_pred cCCcCccCCCCcch
Confidence 99999988775544
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.6e-19 Score=192.53 Aligned_cols=256 Identities=32% Similarity=0.396 Sum_probs=211.0
Q ss_pred CCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEE
Q 009084 25 PGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRI 104 (544)
Q Consensus 25 ~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 104 (544)
..-..|+++++ .++.+|..+. ++|+.|++..|+++.+|.. .++|++|++++|. ++.+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l----p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL----PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc----ccccceeec
Confidence 44678999996 6778998775 4899999999999999863 5899999999985 7778752 468999999
Q ss_pred eccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCCCCCCCEEEEecCCCCCcCCCCC
Q 009084 105 SYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLELRDCKMLQSLPALP 184 (544)
Q Consensus 105 ~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~~ 184 (544)
++|.+..+|.. ..+|+.|++++|+++.+|.. +++|+.|++++|. +..+|..+.+|+.|.+++| .++.+|..+
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N-~L~~LP~lp 341 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNN-QLTSLPTLP 341 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCcccccccccccC-ccccccccc
Confidence 99999888763 36799999999999999863 4789999999985 6678888889999999775 567788877
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcCCCCCCCCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCCCC
Q 009084 185 LCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSL 264 (544)
Q Consensus 185 ~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l 264 (544)
.+|+.|+|++|++. .+|....+|+.|++++ +.+..+|..+.+|+.|++++|. ++.+|.....|+.|+++++ .+..+
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N-~LssI 417 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSL 417 (788)
T ss_pred cccceEecCCCccC-CCCCCCcccceehhhc-cccccCcccccccceEEecCCc-ccCCCCcccCCCEEEccCC-cCCCC
Confidence 89999999998764 5777788999999998 5677899888899999999985 5578888889999999995 58889
Q ss_pred CCCCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCC
Q 009084 265 PEIPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCL 310 (544)
Q Consensus 265 ~~lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~ 310 (544)
|.+|.+|+.|+++++. |+.+|..+..+. .+..+++.+++
T Consensus 418 P~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~------~L~~LdLs~N~ 456 (788)
T PRK15387 418 PMLPSGLLSLSVYRNQ-LTRLPESLIHLS------SETTVNLEGNP 456 (788)
T ss_pred CcchhhhhhhhhccCc-ccccChHHhhcc------CCCeEECCCCC
Confidence 9999999999999865 778876544321 23677777764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.3e-20 Score=187.87 Aligned_cols=229 Identities=23% Similarity=0.288 Sum_probs=121.2
Q ss_pred cEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecC
Q 009084 5 KRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSC 82 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c 82 (544)
+.|++++|.+..+.. .|.++++|+++++..| .+..+|.......+|+.|+|.+|.|.++. +.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 457777777665543 3666777777777663 56666664444555666666666666543 23445556666666654
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCC-----
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKM----- 155 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~----- 155 (544)
. +..+|...+..-.++++|+|++|.++.+.. .|..+.+|..|.|+.|.++.+|. .+.+|++|+.|+|..|..
T Consensus 160 ~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 160 L-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred h-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 4 444444334444556666666666555322 24555556666666666665553 334455555555555432
Q ss_pred ------------------CCCCCC----CCCCCCEEEEecCCCCCcCC-CC---CCCccEEEEeCCCCCCCCCCC---CC
Q 009084 156 ------------------LQSLPE----LPLCLKSLELRDCKMLQSLP-AL---PLCLESLNLTGCNMLRSLPAL---PL 206 (544)
Q Consensus 156 ------------------l~~lp~----~~~~L~~L~l~~~~~l~~l~-~~---~~~L~~L~Ls~c~~l~~l~~~---~~ 206 (544)
+..+.+ ...+++.|++..+ .++.+. .+ +..|+.|++++|.+...-+.. .+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 111111 1245555555433 222222 12 334566777777665443333 66
Q ss_pred CccEEEEeCCCCCCcCCCC----CCCCCEEeEecC
Q 009084 207 CLESLNLTGCNMLRSLPEL----PLCLKYLYLGDC 237 (544)
Q Consensus 207 ~L~~L~Ls~c~~l~~lp~~----~~~L~~L~L~~~ 237 (544)
+|+.|+|+. +.++.+++. +..|+.|.|++|
T Consensus 318 kL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 318 KLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred cceeEeccc-cccccCChhHHHHHHHhhhhccccc
Confidence 777777777 455555532 234444444444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.4e-20 Score=190.50 Aligned_cols=259 Identities=24% Similarity=0.322 Sum_probs=185.6
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcc-cccCccCcEeEeecCCCccCCccCCCCCCccEEEE
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDN-IGNLKSLGHISAAGSAISQLPSSVADSNVLGILDF 79 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 79 (544)
|+.|..|||++|++++.|..+..-+++-+|+|++| .+..+|.. +-++..|-+|||+.|.+..+|+.+..+..|++|.|
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 45677788888888888877777778888888874 66677765 45777788888888888888888888888888888
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCC--CCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVM--EIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
++|+.. .+.-..+..+++|+.|.+++.+-+ .+|..+..+.+|..++++.|++..+|..+.++.+|+.|+|++|+. +
T Consensus 181 s~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-t 258 (1255)
T KOG0444|consen 181 SNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-T 258 (1255)
T ss_pred CCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-e
Confidence 887632 211111345677888888877633 489999999999999999999999999999999999999999874 3
Q ss_pred CCCC---CCCCCCEEEEecCCCCCcCCCCCC---CccEEEEeCCCCC-CCCCCC---CCCccEEEEeCCCCCCcCCCCC-
Q 009084 158 SLPE---LPLCLKSLELRDCKMLQSLPALPL---CLESLNLTGCNML-RSLPAL---PLCLESLNLTGCNMLRSLPELP- 226 (544)
Q Consensus 158 ~lp~---~~~~L~~L~l~~~~~l~~l~~~~~---~L~~L~Ls~c~~l-~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~- 226 (544)
.+.. .-.+|++|+++.+ .++.+|.... .|+.|.+.+|++. ..+|.. +..|+.+..++ +.++-+|+++
T Consensus 259 eL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglc 336 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLC 336 (1255)
T ss_pred eeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhh
Confidence 3221 2357888888664 5677776544 4555666666553 456655 66777777776 6778888766
Q ss_pred --CCCCEEeEecCCCCCCCCc---ccCCCCeeeeccCCCCCCCC
Q 009084 227 --LCLKYLYLGDCNMLRSLPE---LSLCLQSLNAWNCNRLQSLP 265 (544)
Q Consensus 227 --~~L~~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~L~~l~ 265 (544)
..|+.|.|++|..+ .+|+ .++.|+.|++...++|.--|
T Consensus 337 RC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 46778888776554 3554 33667777777777766544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-18 Score=175.80 Aligned_cols=242 Identities=23% Similarity=0.279 Sum_probs=133.1
Q ss_pred CCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccC-CCCCCccEEEEe
Q 009084 3 HLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSV-ADSNVLGILDFS 80 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~l~ 80 (544)
.|+.|||+.|.|.++|.. +..-.++++|+|++|....---..|..+.+|..|.|+.|.++.+|... .+|++|+.|+|.
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 455666666666655543 444455666666654322222223555555555556666666555432 235555555555
Q ss_pred cCC-----------------------CCCccChhhhcCCCCCCEEEEeccCCCCCC-hhccCCCCccEEEEeCccCCCCc
Q 009084 81 SCK-----------------------GLVSLPRSLLLGLSSLGLLRISYSAVMEIP-QEIACLSSLTGLHLSGNNFESLP 136 (544)
Q Consensus 81 ~c~-----------------------~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~lp 136 (544)
.|. .+..+.+++|..+.++++|+|+.|.+..+- .++-++++|+.|++++|.|..+.
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 544 133344444444555555555555544422 23444555555555555555332
Q ss_pred -hhhcCCCCccEEEecCCCCCCCCCCC----CCCCCEEEEecCCCCCcCCC----CCCCccEEEEeCCCCCCCCCCC---
Q 009084 137 -ASIKQLSRLRSLHLEDCKMLQSLPEL----PLCLKSLELRDCKMLQSLPA----LPLCLESLNLTGCNMLRSLPAL--- 204 (544)
Q Consensus 137 -~~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~Ls~c~~l~~l~~~--- 204 (544)
.++...++|+.|+|++|. ++.+++. +..|+.|+++.+ .+..+.. .+.+|++|+|++|.+...+.+.
T Consensus 310 ~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred cchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 233444555555555554 2333321 244555555433 2222221 2467888888888776544433
Q ss_pred ---CCCccEEEEeCCCCCCcCC----CCCCCCCEEeEecCCCCCCCCccc
Q 009084 205 ---PLCLESLNLTGCNMLRSLP----ELPLCLKYLYLGDCNMLRSLPELS 247 (544)
Q Consensus 205 ---~~~L~~L~Ls~c~~l~~lp----~~~~~L~~L~L~~~~~l~~lp~~~ 247 (544)
+++|++|++.| +.++++| ..+..|+.|+|.+|.....-|..+
T Consensus 388 f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 88999999998 7888887 466889999999988766656554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=7e-17 Score=176.63 Aligned_cols=223 Identities=26% Similarity=0.453 Sum_probs=154.9
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
+...|++++++++.+|..+. ++|+.|+|++| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 46788888888888887553 57888888886 5667877554 588888888888888887554 47888888887
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCC-
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPE- 161 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~- 161 (544)
. +..+|.. + ..+|+.|++++|.+..+|..+. ++|+.|++++|+++.+|..+. ++|+.|++++|. +..+|.
T Consensus 252 ~-L~~LP~~-l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~ 322 (754)
T PRK15370 252 R-ITELPER-L--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET 322 (754)
T ss_pred c-cCcCChh-H--hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc
Confidence 6 5677765 2 2478888888888887777653 578888888888888876543 468888888876 344553
Q ss_pred CCCCCCEEEEecCCCCCcCCCC-CCCccEEEEeCCCCCCCCCCC-CCCccEEEEeCCCCCCcCCCCC-CCCCEEeEecCC
Q 009084 162 LPLCLKSLELRDCKMLQSLPAL-PLCLESLNLTGCNMLRSLPAL-PLCLESLNLTGCNMLRSLPELP-LCLKYLYLGDCN 238 (544)
Q Consensus 162 ~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~Ls~c~~l~~l~~~-~~~L~~L~Ls~c~~l~~lp~~~-~~L~~L~L~~~~ 238 (544)
.+++|+.|++++|. ++.+|.. +++|+.|++++|++. .+|.. .++|+.|+|++| .+..+|..+ ..|+.|++++|.
T Consensus 323 l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N~ 399 (754)
T PRK15370 323 LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQIT-VLPETLPPTITTLDVSRN-ALTNLPENLPAALQIMQASRNN 399 (754)
T ss_pred ccccceeccccCCc-cccCChhhcCcccEEECCCCCCC-cCChhhcCCcCEEECCCC-cCCCCCHhHHHHHHHHhhccCC
Confidence 45677777776663 4445543 346777777777653 34443 567777777774 455666544 356777777754
Q ss_pred CCCCCCc
Q 009084 239 MLRSLPE 245 (544)
Q Consensus 239 ~l~~lp~ 245 (544)
. ..+|.
T Consensus 400 L-~~LP~ 405 (754)
T PRK15370 400 L-VRLPE 405 (754)
T ss_pred c-ccCch
Confidence 3 34544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=1.1e-19 Score=175.77 Aligned_cols=229 Identities=29% Similarity=0.423 Sum_probs=148.2
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
.|.+|++.+|++.++|.+++.+..++.|+.+.+ ++..+|+.++.+.+|++|+++.|.+.++|++++.+-.|+.|+..+|
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc
Confidence 455666666666666666666666666666663 5566666666666677777666666666666666666666666665
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPEL 162 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 162 (544)
+ +.++|.+ +.++.+|..|++.+|.+.++|+..-.|+.|++|+...|.++.+|+.++.+.+|+.|++..|+ +..+|++
T Consensus 148 ~-i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef 224 (565)
T KOG0472|consen 148 Q-ISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPEF 224 (565)
T ss_pred c-cccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCCC
Confidence 4 5566665 56666677777777777776665555777777777777777777777777777777777765 4455654
Q ss_pred C--CCCCEEEEecCCCCCcCCC----CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCCCCC--CCE
Q 009084 163 P--LCLKSLELRDCKMLQSLPA----LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPELPLC--LKY 231 (544)
Q Consensus 163 ~--~~L~~L~l~~~~~l~~l~~----~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~~~--L~~ 231 (544)
+ ..|+.|++ +.+.++.+|. .+.++..|++.+|+. +..|.. +.+|++||+|+ +.+..+|..+++ |+.
T Consensus 225 ~gcs~L~Elh~-g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~ 301 (565)
T KOG0472|consen 225 PGCSLLKELHV-GENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKF 301 (565)
T ss_pred CccHHHHHHHh-cccHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccC-CccccCCcccccceeee
Confidence 4 34555555 2334444443 345566677777765 445554 67777888877 667777766654 445
Q ss_pred EeEecCC
Q 009084 232 LYLGDCN 238 (544)
Q Consensus 232 L~L~~~~ 238 (544)
|.+.||+
T Consensus 302 L~leGNP 308 (565)
T KOG0472|consen 302 LALEGNP 308 (565)
T ss_pred hhhcCCc
Confidence 6666665
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1e-16 Score=175.32 Aligned_cols=220 Identities=23% Similarity=0.428 Sum_probs=178.5
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
++|+.|+|++|+++.+|..+. ++|++|++++| .+..+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 468999999999999998654 69999999987 5778887654 589999999999999998765 5899999998
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPE 161 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 161 (544)
|. +..+|.. + .++|+.|++++|.+..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|. ++.+|.
T Consensus 272 N~-L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~ 342 (754)
T PRK15370 272 NK-ISCLPEN-L--PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENA-LTSLPA 342 (754)
T ss_pred Cc-cCccccc-c--CCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCc-cccCCh
Confidence 75 6778875 3 3589999999999998887653 589999999999999986553 689999999987 455664
Q ss_pred -CCCCCCEEEEecCCCCCcCCC-CCCCccEEEEeCCCCCCCCCCC-CCCccEEEEeCCCCCCcCCCCC-------CCCCE
Q 009084 162 -LPLCLKSLELRDCKMLQSLPA-LPLCLESLNLTGCNMLRSLPAL-PLCLESLNLTGCNMLRSLPELP-------LCLKY 231 (544)
Q Consensus 162 -~~~~L~~L~l~~~~~l~~l~~-~~~~L~~L~Ls~c~~l~~l~~~-~~~L~~L~Ls~c~~l~~lp~~~-------~~L~~ 231 (544)
++++|+.|++++|. +..+|. .+.+|+.|+|++|.+. .+|.. ..+|+.|++++ +.+..+|..+ +.+..
T Consensus 343 ~l~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 343 SLPPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALT-NLPENLPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred hhcCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccE
Confidence 56799999998874 566665 3468999999999765 55654 56899999999 5667887644 56788
Q ss_pred EeEecCCCC
Q 009084 232 LYLGDCNML 240 (544)
Q Consensus 232 L~L~~~~~l 240 (544)
|++.+|+..
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 999998754
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-18 Score=150.04 Aligned_cols=152 Identities=27% Similarity=0.459 Sum_probs=127.1
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
|.+++.|.|++|+++.+|..++.+.+|++|++.+ +.++.+|..++.+++|+.|+++-|.+..+|..+|.++.|+.|++.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 3567788888888888888888888888888887 477888888888888888888888888888888888888888888
Q ss_pred cCCCC-CccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCC
Q 009084 81 SCKGL-VSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 81 ~c~~l-~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 154 (544)
.|... ..+|.. |..+..|+.|++++|.+.-+|..++.+++|+.|.+..|.+-++|..++.++.|++|.+.+|.
T Consensus 111 ynnl~e~~lpgn-ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 111 YNNLNENSLPGN-FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccCCcc-hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 87643 345655 66778888888888888888888888888888888888888888888888888888888875
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=9.9e-18 Score=177.41 Aligned_cols=181 Identities=31% Similarity=0.399 Sum_probs=113.2
Q ss_pred CCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCC---CCCCCEEEEec
Q 009084 97 SSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPEL---PLCLKSLELRD 173 (544)
Q Consensus 97 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~ 173 (544)
.+|++++++.+.+..+|++++.+.+|+.|++..|.++.+|..+...++|+.|.+.+|. +..+|.. ..+|++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehh
Confidence 3577778888888888999999999999999999988888777777777777776665 3344432 24555666543
Q ss_pred CCCCCcCCC-----------------------------CCCCccEEEEeCCCCCCC-CCCC--CCCccEEEEeCCCCCCc
Q 009084 174 CKMLQSLPA-----------------------------LPLCLESLNLTGCNMLRS-LPAL--PLCLESLNLTGCNMLRS 221 (544)
Q Consensus 174 ~~~l~~l~~-----------------------------~~~~L~~L~Ls~c~~l~~-l~~~--~~~L~~L~Ls~c~~l~~ 221 (544)
+ .+..+|. ....|+.|.+.+|.+... +|.. +.+|+.|+|++ |.+.+
T Consensus 320 N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~ 397 (1081)
T KOG0618|consen 320 N-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNS 397 (1081)
T ss_pred c-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-ccccc
Confidence 2 1221111 122355566666665543 3333 66677777776 56666
Q ss_pred CCCC----CCCCCEEeEecCC----------------------CCCCCCcc--cCCCCeeeeccCCCCCCC--C-CCC-C
Q 009084 222 LPEL----PLCLKYLYLGDCN----------------------MLRSLPEL--SLCLQSLNAWNCNRLQSL--P-EIP-S 269 (544)
Q Consensus 222 lp~~----~~~L~~L~L~~~~----------------------~l~~lp~~--~~~L~~L~l~~c~~L~~l--~-~lp-~ 269 (544)
+|+. +..|+.|+|++|. .+..+|+. ++.|+.++++ |+.|+.+ + .+| +
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSP 476 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCc
Confidence 6643 2445666666653 22334432 2556777766 3555443 3 377 8
Q ss_pred CccEEeccCCCC
Q 009084 270 CLQELDASVLET 281 (544)
Q Consensus 270 sL~~L~i~~C~~ 281 (544)
.|++||++|.+.
T Consensus 477 ~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 477 NLKYLDLSGNTR 488 (1081)
T ss_pred ccceeeccCCcc
Confidence 999999999874
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=2.1e-18 Score=166.89 Aligned_cols=240 Identities=31% Similarity=0.423 Sum_probs=184.1
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
.|..|.+++|.++.+-+.+.++..|.+|++.++ .+..+|.+++.+..++.|+.+.|++..+|+.++.+.+|..|+++.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 356788888888877777888999999999985 6777888899999999999999999999999999999999999887
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPEL 162 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 162 (544)
. +..++++ ++.+..|..|+..+|++..+|++++.+.+|..|++.+|+++++|+..-+++.|++|+...|- ++.+|+-
T Consensus 125 ~-~~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~ 201 (565)
T KOG0472|consen 125 E-LKELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE 201 (565)
T ss_pred c-eeecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh
Confidence 6 6677777 78888999999999999999999999999999999999999888877778899999887764 6777765
Q ss_pred CCCCCEEEEecC--CCCCcCCCCC--CCccEEEEeCCCCCCCCCCC----CCCccEEEEeCCCCCCcCCCCC---CCCCE
Q 009084 163 PLCLKSLELRDC--KMLQSLPALP--LCLESLNLTGCNMLRSLPAL----PLCLESLNLTGCNMLRSLPELP---LCLKY 231 (544)
Q Consensus 163 ~~~L~~L~l~~~--~~l~~l~~~~--~~L~~L~Ls~c~~l~~l~~~----~~~L~~L~Ls~c~~l~~lp~~~---~~L~~ 231 (544)
...+++|++-+. +.+..+|+.. ..|++|.+..|.+ +.+|+. +++|..|||.. +.++++|..+ .+|.+
T Consensus 202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLER 279 (565)
T ss_pred hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhh
Confidence 555544443222 3455666433 2467777766554 445544 77888888888 7888888754 56778
Q ss_pred EeEecCCCCCCCCcccCC
Q 009084 232 LYLGDCNMLRSLPELSLC 249 (544)
Q Consensus 232 L~L~~~~~l~~lp~~~~~ 249 (544)
||+++|. +..+|-.+++
T Consensus 280 LDlSNN~-is~Lp~sLgn 296 (565)
T KOG0472|consen 280 LDLSNND-ISSLPYSLGN 296 (565)
T ss_pred hcccCCc-cccCCccccc
Confidence 8888763 4445544433
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=6.1e-16 Score=133.55 Aligned_cols=139 Identities=27% Similarity=0.483 Sum_probs=128.8
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCc--cCCccCCCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAIS--QLPSSVADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~ 78 (544)
+.+|+.|++.+|+|+++|.+++.++.|+.|++.- +.+..+|..|+.++.|+.|||.+|++. .+|..+..++.|+.|+
T Consensus 55 l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 4689999999999999999999999999999987 478899999999999999999999887 7899999999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQL 142 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l 142 (544)
++.|. ..-+|.. ++++++|+.|.+..|.+.++|..++.+..|+.|.+.+|.++-+|+.++++
T Consensus 134 l~dnd-fe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 134 LGDND-FEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred hcCCC-cccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 99976 6778887 89999999999999999999999999999999999999999999877654
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.45 E-value=4.5e-14 Score=157.06 Aligned_cols=273 Identities=30% Similarity=0.384 Sum_probs=169.3
Q ss_pred CCCcEEEecCCC--CcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEE
Q 009084 2 EHLKRIYLGRTA--ITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~--i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 78 (544)
++|++|-+.+|. +..++.. |..++.|++|||++|..+..+|+.++.+.+||+|+++++.+..+|.+++++++|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 467888888875 5666654 7789999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCC---CChhccCCCCccEEEEeCccCCCCchhhcCCCCcc----EEEec
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME---IPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLR----SLHLE 151 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~----~L~L~ 151 (544)
+..+..+..+|.. ...+.+|++|.+....... .-..+..+.+|+.|....... .+-..+..+++|. .+.+.
T Consensus 625 l~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhc
Confidence 9998877777554 6679999999998765222 333456666777776655443 1111222233333 23332
Q ss_pred CCCCCCCCC--CCCCCCCEEEEecCCCCCcCCCC---------CCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCC
Q 009084 152 DCKMLQSLP--ELPLCLKSLELRDCKMLQSLPAL---------PLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNM 218 (544)
Q Consensus 152 ~~~~l~~lp--~~~~~L~~L~l~~~~~l~~l~~~---------~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~ 218 (544)
+|..-+..+ ..+.+|+.|.+.+|...+..... ++++..+.+.+|.....+... .++|+.|.+..|..
T Consensus 703 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 703 GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 222222222 12456777777777655432221 334444555555555444332 56666666666666
Q ss_pred CCcCCCCCC---CCCEEeEecCCCCCCCCcccCCCCee-eeccCCCCCCCCCCC---CCccEEeccCCCCCCCCCc
Q 009084 219 LRSLPELPL---CLKYLYLGDCNMLRSLPELSLCLQSL-NAWNCNRLQSLPEIP---SCLQELDASVLETLSKPSP 287 (544)
Q Consensus 219 l~~lp~~~~---~L~~L~L~~~~~l~~lp~~~~~L~~L-~l~~c~~L~~l~~lp---~sL~~L~i~~C~~L~~~~~ 287 (544)
++.+..... .+..+.+. +..++.+ .+.+...++++-..| +.|+.+.+..||++..+|.
T Consensus 783 ~e~~i~~~k~~~~l~~~i~~-----------f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 783 LEDIIPKLKALLELKELILP-----------FNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred cccCCCHHHHhhhcccEEec-----------ccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 555443321 12211111 1223333 233333333333222 3488888888888888874
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=1.8e-13 Score=137.86 Aligned_cols=235 Identities=21% Similarity=0.192 Sum_probs=135.4
Q ss_pred EEEecCCCCc--ccCcccCCCCCccEEeeecCCCC----CccCcccccCccCcEeEeecCCCcc-------CCccCCCCC
Q 009084 6 RIYLGRTAIT--ELPSSFENLPGLEVLFVEDCSKL----DKLPDNIGNLKSLGHISAAGSAISQ-------LPSSVADSN 72 (544)
Q Consensus 6 ~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~c~~l----~~lp~~l~~l~~L~~L~L~~~~l~~-------lp~~~~~l~ 72 (544)
.|+|.++.++ .....+..+.+|+.|++++|... ..++..+...++|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566665554 33333555666777777776432 2345455566677777776665542 233455667
Q ss_pred CccEEEEecCCCCCccChhhhcCC---CCCCEEEEeccCCCC-----CChhccCC-CCccEEEEeCccCC-----CCchh
Q 009084 73 VLGILDFSSCKGLVSLPRSLLLGL---SSLGLLRISYSAVME-----IPQEIACL-SSLTGLHLSGNNFE-----SLPAS 138 (544)
Q Consensus 73 ~L~~L~l~~c~~l~~lp~~~~~~l---~~L~~L~l~~~~~~~-----lp~~l~~l-~~L~~L~l~~~~l~-----~lp~~ 138 (544)
+|+.|++++|......+.. +..+ ++|++|++++|.+.. +...+..+ ++|+.|++++|.++ .++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 7777777777643333332 3333 337777777777653 33345555 77777777777766 33344
Q ss_pred hcCCCCccEEEecCCCCCC----CCCCC---CCCCCEEEEecCCCCC-------cCCCCCCCccEEEEeCCCCCCC----
Q 009084 139 IKQLSRLRSLHLEDCKMLQ----SLPEL---PLCLKSLELRDCKMLQ-------SLPALPLCLESLNLTGCNMLRS---- 200 (544)
Q Consensus 139 l~~l~~L~~L~L~~~~~l~----~lp~~---~~~L~~L~l~~~~~l~-------~l~~~~~~L~~L~Ls~c~~l~~---- 200 (544)
+..+++|+.|++++|.... .++.. .++|+.|++++|..-. ......++|+.|++++|.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 5566677777777765331 11111 2477777777664211 1122346788888888765431
Q ss_pred ----CCCCCCCccEEEEeCCCCC----CcCC---CCCCCCCEEeEecCCCCC
Q 009084 201 ----LPALPLCLESLNLTGCNML----RSLP---ELPLCLKYLYLGDCNMLR 241 (544)
Q Consensus 201 ----l~~~~~~L~~L~Ls~c~~l----~~lp---~~~~~L~~L~L~~~~~l~ 241 (544)
++...+.|++|++++|... ..+. ...++|+.+++++|..-.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 1111368888888886442 1111 223678888888876553
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=7.7e-14 Score=148.32 Aligned_cols=248 Identities=27% Similarity=0.281 Sum_probs=114.6
Q ss_pred ccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEec
Q 009084 27 LEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISY 106 (544)
Q Consensus 27 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~ 106 (544)
|+.|+++++ ....+|..+..+.+|+.|++++|.|..+|.++.++.+|++|.|.++. +..+|.+ +..+.+|+.|+++.
T Consensus 47 L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~-~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPAS-ISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchh-HHhhhcccccccch
Confidence 445555442 33444444444445555555555444444444444445544444433 4444444 44444444444444
Q ss_pred cCCCCCChhccCCCCccEEEEeCc-cCCCCchhhcCCCCccEEEecCCCCCCCCCCCCCCCCE-EEEecCCCCCcCCCCC
Q 009084 107 SAVMEIPQEIACLSSLTGLHLSGN-NFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKS-LELRDCKMLQSLPALP 184 (544)
Q Consensus 107 ~~~~~lp~~l~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~-L~l~~~~~l~~l~~~~ 184 (544)
|.+..+|..+..+..++.+.+++| .+..++. . .++.+++..+.....++.....++. |++.++......-..+
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~-~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----T-SIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNL 198 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhcc----c-cchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhc
Confidence 444444444444444444444444 2222211 1 1334444443333333332233333 4443332221111112
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcCCC-CCCCCCEEeEecCCCCCCCCccc---CCCCeeeeccCCC
Q 009084 185 LCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPE-LPLCLKYLYLGDCNMLRSLPELS---LCLQSLNAWNCNR 260 (544)
Q Consensus 185 ~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~ 260 (544)
.+|+.|....|.+ ..+....++|+.|+.+.|...+..+. ...+|++++++++. +..+|++. .+|+.|...+ +.
T Consensus 199 ~~l~~l~c~rn~l-s~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~ 275 (1081)
T KOG0618|consen 199 ANLEVLHCERNQL-SELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANH-NR 275 (1081)
T ss_pred cchhhhhhhhccc-ceEEecCcchheeeeccCcceeeccccccccceeeecchhh-hhcchHHHHhcccceEecccc-hh
Confidence 2222222222211 11222246777777777666544443 33678888888864 45566655 4566666655 44
Q ss_pred CCCCCCC---CCCccEEeccCCCCCCCCC
Q 009084 261 LQSLPEI---PSCLQELDASVLETLSKPS 286 (544)
Q Consensus 261 L~~l~~l---p~sL~~L~i~~C~~L~~~~ 286 (544)
+..+|.- ..+|+.|.+..|. |+.+|
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~ne-l~yip 303 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNE-LEYIP 303 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhh-hhhCC
Confidence 5555531 1567777666653 44444
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=2.6e-13 Score=136.74 Aligned_cols=236 Identities=19% Similarity=0.200 Sum_probs=152.6
Q ss_pred CCCcEEEecCCCCc-----ccCcccCCCCCccEEeeecCCCC------CccCcccccCccCcEeEeecCCCc-cCCccCC
Q 009084 2 EHLKRIYLGRTAIT-----ELPSSFENLPGLEVLFVEDCSKL------DKLPDNIGNLKSLGHISAAGSAIS-QLPSSVA 69 (544)
Q Consensus 2 ~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~c~~l------~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~~ 69 (544)
.+|++|+++++.++ .++..+...++|+.|+++++... ..++..+..+++|++|+++++.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 45888899988874 35656777888899988886433 123445677889999999888876 3333333
Q ss_pred CC---CCccEEEEecCCCCC----ccChhhhcCC-CCCCEEEEeccCCCC-----CChhccCCCCccEEEEeCccCC---
Q 009084 70 DS---NVLGILDFSSCKGLV----SLPRSLLLGL-SSLGLLRISYSAVME-----IPQEIACLSSLTGLHLSGNNFE--- 133 (544)
Q Consensus 70 ~l---~~L~~L~l~~c~~l~----~lp~~~~~~l-~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~--- 133 (544)
.+ ++|+.|++++|.... .+... +..+ ++|+.|++++|.+.. ++..+..+.+|++|++++|.++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 33 449999998887331 11122 4455 788999999998773 4555677788999999988877
Q ss_pred --CCchhhcCCCCccEEEecCCCCCCC----C---CCCCCCCCEEEEecCCCCC----c----CCCCCCCccEEEEeCCC
Q 009084 134 --SLPASIKQLSRLRSLHLEDCKMLQS----L---PELPLCLKSLELRDCKMLQ----S----LPALPLCLESLNLTGCN 196 (544)
Q Consensus 134 --~lp~~l~~l~~L~~L~L~~~~~l~~----l---p~~~~~L~~L~l~~~~~l~----~----l~~~~~~L~~L~Ls~c~ 196 (544)
.++..+..+++|+.|++++|..... + ....++|+.|++++|..-. . ++.....|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 2444556667899999988864211 1 1234678899998875321 1 11123678889999887
Q ss_pred CCC----CCCC---CCCCccEEEEeCCCCCCc----CC---CCC-CCCCEEeEecCC
Q 009084 197 MLR----SLPA---LPLCLESLNLTGCNMLRS----LP---ELP-LCLKYLYLGDCN 238 (544)
Q Consensus 197 ~l~----~l~~---~~~~L~~L~Ls~c~~l~~----lp---~~~-~~L~~L~L~~~~ 238 (544)
... .+.. .+++|+++++++|..-.. +. ... +.|++|++.+++
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 652 1111 157889999988544322 11 122 567777766653
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=1.4e-11 Score=137.39 Aligned_cols=274 Identities=27% Similarity=0.344 Sum_probs=175.8
Q ss_pred CCCCcEEEecC-CCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCc-cCCccCCCCCCccEEE
Q 009084 1 MEHLKRIYLGR-TAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAIS-QLPSSVADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~-~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~ 78 (544)
|+.|++|||++ ..+.++|..++.|-+||+|+|++. .+..+|..+++++.|.+|++..+.-. .+|.....+.+|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 68899999997 567799999999999999999995 78899999999999999999876544 4455555699999999
Q ss_pred EecCC-CCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCcc----EEEEeCccCCCCchhhcCCCCccEEEecCC
Q 009084 79 FSSCK-GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLT----GLHLSGNNFESLPASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 79 l~~c~-~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~----~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~ 153 (544)
+..-. .....--..+..+.+|+.+....... .+-..+..+..|. .+.+.++.....+.++..+.+|+.|.+.+|
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence 97744 11111111145566666666655443 2222333344444 344444555666778888999999999999
Q ss_pred CCCCCCCCC---------CCCCCEEEEecCCCCCcCC--CCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCC
Q 009084 154 KMLQSLPEL---------PLCLKSLELRDCKMLQSLP--ALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNML 219 (544)
Q Consensus 154 ~~l~~lp~~---------~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l 219 (544)
......... ++++..+.+.+|..+..+. ..+++|+.|.+..|...+.+... +..+..+.+.. +.+
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~ 806 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKL 806 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecc-ccc
Confidence 865432222 3345555555666666544 35678999999999988766544 33333322322 111
Q ss_pred CcCCCCCCCCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCCCCCCCCCCccEEeccCC-CCCCCCCc
Q 009084 220 RSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELDASVL-ETLSKPSP 287 (544)
Q Consensus 220 ~~lp~~~~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~lp~sL~~L~i~~C-~~L~~~~~ 287 (544)
..++ ...++.+.+.+...|-.+.+|+.+.+..|+++..+|. +.++.+.+| ..+...|.
T Consensus 807 ~~l~------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~----~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 807 EGLR------MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL----LSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred ccce------eeecCCCCceeEecccCccchhheehhcCcccccCcc----ccccceeccccceeecCC
Confidence 1111 0111222222333344445578888888888888875 445667776 66666654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=3.1e-13 Score=131.24 Aligned_cols=142 Identities=23% Similarity=0.341 Sum_probs=92.8
Q ss_pred cCCCCcccCcccCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecCCCCCc
Q 009084 10 GRTAITELPSSFENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSCKGLVS 87 (544)
Q Consensus 10 ~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~ 87 (544)
++-+++++|..+. +.-..++|..| .++.+|+ .|+.+++|++|||+.|+|+.| |..|..+.+|..|.+.+++.+++
T Consensus 54 r~~GL~eVP~~LP--~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPANLP--PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCcccCC--CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3445555554321 24456666664 4555554 367777777777777777755 45666777777777777666777
Q ss_pred cChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCC
Q 009084 88 LPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 88 lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~ 154 (544)
+|...|.++.+|+.|.+.-|++.-+ .+.+..+++|..|.+.+|.+..++. .+..+..++.+.+..|.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 7777777777777777777766653 3346677777777777777776665 56667777777666655
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.6e-12 Score=126.39 Aligned_cols=253 Identities=22% Similarity=0.283 Sum_probs=156.8
Q ss_pred CCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeec-CCCccCCc--------------
Q 009084 3 HLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAG-SAISQLPS-------------- 66 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~-~~l~~lp~-------------- 66 (544)
..+.|+|..|+|+.+|+. |+.+++|++|||+.|.....-|+.|.+++.|-.|-+.+ |+|+.+|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 346788888888888876 88888888888888765556677777777777776643 77776664
Q ss_pred -----------------------------------cCCCCCCccEEEEecCCCCCc------------------------
Q 009084 67 -----------------------------------SVADSNVLGILDFSSCKGLVS------------------------ 87 (544)
Q Consensus 67 -----------------------------------~~~~l~~L~~L~l~~c~~l~~------------------------ 87 (544)
++..+..++.+++..+..+-.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 222233333333333221100
Q ss_pred -------------------------------------cChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeC
Q 009084 88 -------------------------------------LPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSG 129 (544)
Q Consensus 88 -------------------------------------lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~ 129 (544)
.|...|.++++|++|++++|.++.+ +.+|..+..++.|.|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 2333477899999999999999885 45688899999999999
Q ss_pred ccCCCCch-hhcCCCCccEEEecCCCCCCCCCCCC---CCCCEEEEecCCCC------------------CcCC-CCCCC
Q 009084 130 NNFESLPA-SIKQLSRLRSLHLEDCKMLQSLPELP---LCLKSLELRDCKML------------------QSLP-ALPLC 186 (544)
Q Consensus 130 ~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~~~~l------------------~~l~-~~~~~ 186 (544)
|++..+.. .+.++..|+.|+|.+|+.....|..+ .+|.+|.+-.++.. ...+ ..+..
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~ 387 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGF 387 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCch
Confidence 98886654 46789999999999998665555544 45666666543221 1111 12445
Q ss_pred ccEEEEeCCCCCC----------CC-----CCCCCCccEEEEeCCCCCCcCCCCCC-CCCEEeEecCCCCCCCCc-ccCC
Q 009084 187 LESLNLTGCNMLR----------SL-----PALPLCLESLNLTGCNMLRSLPELPL-CLKYLYLGDCNMLRSLPE-LSLC 249 (544)
Q Consensus 187 L~~L~Ls~c~~l~----------~l-----~~~~~~L~~L~Ls~c~~l~~lp~~~~-~L~~L~L~~~~~l~~lp~-~~~~ 249 (544)
++.+.+++..... .. |..++.+.+..=-.+..++.+|..++ .-+.|++.+|.. +.+|. .+.+
T Consensus 388 ~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~-~~vp~~~~~~ 466 (498)
T KOG4237|consen 388 VRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAI-TSVPDELLRS 466 (498)
T ss_pred hccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchh-cccCHHHHhh
Confidence 6666665543211 11 11144454443333366777777664 455677776643 34443 2233
Q ss_pred CCeeeecc
Q 009084 250 LQSLNAWN 257 (544)
Q Consensus 250 L~~L~l~~ 257 (544)
| .+++++
T Consensus 467 l-~~dls~ 473 (498)
T KOG4237|consen 467 L-LLDLSN 473 (498)
T ss_pred h-hccccc
Confidence 4 444444
No 25
>PRK15386 type III secretion protein GogB; Provisional
Probab=99.12 E-value=4.2e-10 Score=113.29 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=97.5
Q ss_pred CCCCccEEEecCCCCCCCCCCCCCCCCEEEEecCCCCCcCCCC-CCCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCC
Q 009084 141 QLSRLRSLHLEDCKMLQSLPELPLCLKSLELRDCKMLQSLPAL-PLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNML 219 (544)
Q Consensus 141 ~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l 219 (544)
.+.+++.|++++| .++.+|.+|.+|+.|.+.+|..++.+|.. +.+|++|.+++|..+..+| .+|+.|++++ +..
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~-n~~ 124 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKG-SAT 124 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCC-CCC
Confidence 3455666666666 45556666666666666666666666643 3466777777765544443 4566666654 343
Q ss_pred CcCCCCCCCCCEEeEecCCCC--CCCCccc-CCCCeeeeccCCCCCCCCCCCCCccEEeccCC--CCCCCCCccccccCC
Q 009084 220 RSLPELPLCLKYLYLGDCNML--RSLPELS-LCLQSLNAWNCNRLQSLPEIPSCLQELDASVL--ETLSKPSPDLLQWAP 294 (544)
Q Consensus 220 ~~lp~~~~~L~~L~L~~~~~l--~~lp~~~-~~L~~L~l~~c~~L~~l~~lp~sL~~L~i~~C--~~L~~~~~~~~~~~~ 294 (544)
..++..+++|+.|.+.+++.. ..+|..+ .+|+.|.+.+|..+...+.+|.+|+.|+++.+ ..++-....+.
T Consensus 125 ~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP---- 200 (426)
T PRK15386 125 DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISFEGFP---- 200 (426)
T ss_pred cccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccccccccCcccccc----
Confidence 344444455666766443311 2333323 56889999988877644469999999998764 33333322211
Q ss_pred CCCCCCCeEEEEecCCCchhHhh
Q 009084 295 GSLESQPIYFGFTNCLKLNGKAN 317 (544)
Q Consensus 295 ~~~~~~~~~l~~~~C~~L~~~~~ 317 (544)
... .|.|.+|.++++.+.
T Consensus 201 ----~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 201 ----DGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred ----ccc-EechhhhcccCHHHh
Confidence 223 789999999887643
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=2e-11 Score=123.84 Aligned_cols=146 Identities=27% Similarity=0.428 Sum_probs=99.9
Q ss_pred CcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCC
Q 009084 4 LKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCK 83 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~ 83 (544)
|+.|.|..|.+..+|..++++..|..|+|+.| .+..+|..++.|+ |+.|-+++|+++.+|..++.+..|..|+.+.|.
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh
Confidence 34455555666666666666777777777763 5566666665554 677777777777777777766777777777665
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCC
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 154 (544)
+..+|.. ++.+.+|+.|.+..|++..+|+.+.. -.|..||++.|++..||..+.+++.|++|.|.+|+
T Consensus 178 -i~slpsq-l~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 178 -IQSLPSQ-LGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred -hhhchHH-hhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 5556655 66777777777777777777777663 34777777777777777777777777777777766
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.3e-10 Score=103.20 Aligned_cols=134 Identities=22% Similarity=0.326 Sum_probs=34.4
Q ss_pred CCCcccCcccCCCCCccEEeeecCCCCCccCcccc-cCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccCh
Q 009084 12 TAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIG-NLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPR 90 (544)
Q Consensus 12 ~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~-~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 90 (544)
+.|+..+. +.+..++++|+|++| .+..+.. ++ .+.+|+.|++++|.|+.+. .+..+++|+.|++++|. ++.+..
T Consensus 7 ~~i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQ-YNNPVKLRELNLRGN-QISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISE 81 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CH
T ss_pred cccccccc-ccccccccccccccc-ccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCcccc
Confidence 34444444 344555666666664 3333322 44 3556666666666666554 34555666666666654 444443
Q ss_pred hhhcCCCCCCEEEEeccCCCCCC--hhccCCCCccEEEEeCccCCCCch----hhcCCCCccEEEe
Q 009084 91 SLLLGLSSLGLLRISYSAVMEIP--QEIACLSSLTGLHLSGNNFESLPA----SIKQLSRLRSLHL 150 (544)
Q Consensus 91 ~~~~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~L 150 (544)
.....+++|++|++++|.+.++. ..++.+++|+.|++.+|.+..-+. .+..+++|+.||-
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 31234556666666666554421 234455566666666665543331 2344555555543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=3.6e-10 Score=117.46 Aligned_cols=193 Identities=28% Similarity=0.379 Sum_probs=130.3
Q ss_pred EEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCc-cCcEeEeecCCCccCCccCCCCCCccEEEEecCCCC
Q 009084 7 IYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLK-SLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGL 85 (544)
Q Consensus 7 L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l 85 (544)
|++..+.+..-...+..++.++.|++.++ .+..+|...+.+. +|+.|+++.|.+..+|..++.+++|+.|++.+|+ +
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-h
Confidence 55555555433333555677778877774 5666776666664 7888888888888777777788888888888776 6
Q ss_pred CccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC--CCCCCC
Q 009084 86 VSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ--SLPELP 163 (544)
Q Consensus 86 ~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~--~lp~~~ 163 (544)
.++|.. ...++.|+.|++++|.+..+|..++.+..|++|.+++|.+..++..+.++.++..|.+.+++... .....+
T Consensus 176 ~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 176 SDLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 666664 33677788888888888777776666666888888887666666677777777777776665433 222334
Q ss_pred CCCCEEEEecCCCCCcCCC--CCCCccEEEEeCCCCCCCCCC
Q 009084 164 LCLKSLELRDCKMLQSLPA--LPLCLESLNLTGCNMLRSLPA 203 (544)
Q Consensus 164 ~~L~~L~l~~~~~l~~l~~--~~~~L~~L~Ls~c~~l~~l~~ 203 (544)
++++.|+++++ .+..++. ...+++.|+++++.....++.
T Consensus 255 ~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 255 SNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccceeccccc-cccccccccccCccCEEeccCccccccchh
Confidence 56777777544 3344433 345788888888877665554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=2.8e-10 Score=118.26 Aligned_cols=176 Identities=31% Similarity=0.487 Sum_probs=146.5
Q ss_pred CCCcEEEecCCCCcccCcccCCCC-CccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPSSFENLP-GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~-~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+.++.|++.++.+++++.....+. +|+.|+++++ .+..+|..++.+++|+.|+++.|++..+|...+.+++|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 468899999999999998777774 9999999995 77888777899999999999999999999988899999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLP 160 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 160 (544)
++. +..+|.. ...+..|++|.+++|.....+..+..+.++..|.+.++++..++..++.++.|+.|++++|. +..++
T Consensus 195 ~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~ 271 (394)
T COG4886 195 GNK-ISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSIS 271 (394)
T ss_pred CCc-cccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-ccccc
Confidence 977 7888885 34666799999999987777888888999999999999888888888999999999999886 34444
Q ss_pred CC--CCCCCEEEEecCCCCCcCC
Q 009084 161 EL--PLCLKSLELRDCKMLQSLP 181 (544)
Q Consensus 161 ~~--~~~L~~L~l~~~~~l~~l~ 181 (544)
.. ..+++.|++++.......+
T Consensus 272 ~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 272 SLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccCccCEEeccCccccccch
Confidence 32 3678888887765554443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=8.9e-11 Score=119.24 Aligned_cols=186 Identities=28% Similarity=0.446 Sum_probs=128.2
Q ss_pred EEEecCCCCcccCcccC--CCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCC
Q 009084 6 RIYLGRTAITELPSSFE--NLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCK 83 (544)
Q Consensus 6 ~L~L~~~~i~~lp~~l~--~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~ 83 (544)
+|.|++-.++.+|..-. .+.--...||+.| ....+|..++.+..|+.+.|+.|.+..+|..+.++..|..|+++.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 35566666666665422 2344455677774 56777877778888888888888888888888888888888888766
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCC-C
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPE-L 162 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~ 162 (544)
+..+|.. ++.|+ |+.|.+++|+++.+|+.++.+..|..|+.+.|.+..+|+-++.+.+|+.|.+..|..+ .+|+ +
T Consensus 133 -lS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El 208 (722)
T KOG0532|consen 133 -LSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEEL 208 (722)
T ss_pred -hhcCChh-hhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHH
Confidence 6667765 44443 7888888888888888888778888888888888888888888888888888777643 3332 2
Q ss_pred C-CCCCEEEEecCCCCCcCCCCCC---CccEEEEeCCCC
Q 009084 163 P-LCLKSLELRDCKMLQSLPALPL---CLESLNLTGCNM 197 (544)
Q Consensus 163 ~-~~L~~L~l~~~~~l~~l~~~~~---~L~~L~Ls~c~~ 197 (544)
. -.|..|++ .|+++..+|-.+. .|+.|-|.+|++
T Consensus 209 ~~LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 209 CSLPLIRLDF-SCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hCCceeeeec-ccCceeecchhhhhhhhheeeeeccCCC
Confidence 2 23555666 4566666665433 455566666655
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.83 E-value=2.4e-08 Score=100.79 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=27.3
Q ss_pred CCCCEEeEecCCCCCCCCcccCCCCeeeeccCC--CCCC-CCCCCCCccEEeccCCCCC
Q 009084 227 LCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCN--RLQS-LPEIPSCLQELDASVLETL 282 (544)
Q Consensus 227 ~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~--~L~~-l~~lp~sL~~L~i~~C~~L 282 (544)
.+|+.|++++|..+...+....+|+.|.+..+. .+.. ...+|+++ .|++.+|-.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 445555555555432111222455666654421 2221 22466777 7888887554
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=9.5e-11 Score=115.04 Aligned_cols=273 Identities=20% Similarity=0.233 Sum_probs=157.4
Q ss_pred CccEEeeecCCCCCc--cCcccccCccCcEeEeec-CCCc--cCCccCCCCCCccEEEEecCCCCCccChh-hhcCCCCC
Q 009084 26 GLEVLFVEDCSKLDK--LPDNIGNLKSLGHISAAG-SAIS--QLPSSVADSNVLGILDFSSCKGLVSLPRS-LLLGLSSL 99 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~L~~-~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~l~~L 99 (544)
.|+.|.+++|..... +-....+++++++|.+.+ ..++ .+-+.-..+++|++|++..|..+++..-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 478888888866543 333356788888888844 4444 12222346788888888888877665433 35578888
Q ss_pred CEEEEeccCC-CC--CChhccCCCCccEEEEeCccCCC---CchhhcCCCCccEEEecCCCCCCCCC-----CCCCCCCE
Q 009084 100 GLLRISYSAV-ME--IPQEIACLSSLTGLHLSGNNFES---LPASIKQLSRLRSLHLEDCKMLQSLP-----ELPLCLKS 168 (544)
Q Consensus 100 ~~L~l~~~~~-~~--lp~~l~~l~~L~~L~l~~~~l~~---lp~~l~~l~~L~~L~L~~~~~l~~lp-----~~~~~L~~ 168 (544)
++|++++|.- .+ +.....++..++.+.+.||.-.+ +-..-....-+..+++.+|..++... .....|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999988863 22 44445667777777777763221 11112334556677777776555432 22456777
Q ss_pred EEEecCCCCCcC-----CCCCCCccEEEEeCCCCCCCCCC-----CCCCccEEEEeCCCCCC-----cCCCCCCCCCEEe
Q 009084 169 LELRDCKMLQSL-----PALPLCLESLNLTGCNMLRSLPA-----LPLCLESLNLTGCNMLR-----SLPELPLCLKYLY 233 (544)
Q Consensus 169 L~l~~~~~l~~l-----~~~~~~L~~L~Ls~c~~l~~l~~-----~~~~L~~L~Ls~c~~l~-----~lp~~~~~L~~L~ 233 (544)
|..++|..+... .....+|+.|.+++|+..+..-. ..+.|+.+++.+|.... ++....+.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 787777776532 34456778888888876543322 26677777777765433 2334456666676
Q ss_pred EecCCCCCCCCcccCCCCeeeeccCCCCCCCCCCCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCCCch
Q 009084 234 LGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCLKLN 313 (544)
Q Consensus 234 L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~~L~ 313 (544)
+++|..++..- ...+.....-...|+.+.+++||.+++.....+... .+++.+.+..|....
T Consensus 379 lshce~itD~g-------------i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-----~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 379 LSHCELITDEG-------------IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-----RNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhhhhh-------------hhhhhhccccccccceeeecCCCCchHHHHHHHhhC-----cccceeeeechhhhh
Confidence 66666554320 011111112223566666666666665543333221 122445666666555
Q ss_pred hHh
Q 009084 314 GKA 316 (544)
Q Consensus 314 ~~~ 316 (544)
..+
T Consensus 441 k~~ 443 (483)
T KOG4341|consen 441 KEA 443 (483)
T ss_pred hhh
Confidence 543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=4.9e-09 Score=94.55 Aligned_cols=114 Identities=26% Similarity=0.416 Sum_probs=42.9
Q ss_pred CCccCcccccCccCcEeEeecCCCccCCccCC-CCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhc
Q 009084 38 LDKLPDNIGNLKSLGHISAAGSAISQLPSSVA-DSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEI 116 (544)
Q Consensus 38 l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l 116 (544)
+...|. +.+..++++|+|+++.|+.+. .++ .+.+|+.|++++|. +..++. +..++.|+.|++++|.+..+.+.+
T Consensus 9 i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 9 IEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHH
T ss_pred cccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccch
Confidence 344554 566778999999999999875 455 68999999999987 777776 788999999999999999987665
Q ss_pred -cCCCCccEEEEeCccCCCCc--hhhcCCCCccEEEecCCCCC
Q 009084 117 -ACLSSLTGLHLSGNNFESLP--ASIKQLSRLRSLHLEDCKML 156 (544)
Q Consensus 117 -~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~L~~~~~l 156 (544)
..+++|+.|++++|+|..+- ..+..+++|+.|++.+|+..
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 46899999999999887543 35678899999999999854
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=4.9e-10 Score=105.48 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=81.0
Q ss_pred CCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEE
Q 009084 24 LPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLR 103 (544)
Q Consensus 24 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~ 103 (544)
-..|++|||++| .++.+.+++.-+|.++.|+++.|.|..+.. +..+++|+.|++++|. +..+... -.++-+.+.|.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gw-h~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGW-HLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhh-HhhhcCEeeee
Confidence 345666777764 556666666666777777777777666654 6666777777777655 3333332 33556677777
Q ss_pred EeccCCCCCChhccCCCCccEEEEeCccCCCCc--hhhcCCCCccEEEecCCC
Q 009084 104 ISYSAVMEIPQEIACLSSLTGLHLSGNNFESLP--ASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 104 l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~L~~~~ 154 (544)
|++|.+..+ .+++.+-+|..|++++|+|..+. .+|++++.|+.|.|.+|+
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777766554 34556667777777777776443 367777777777777776
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-09 Score=108.30 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=69.5
Q ss_pred CCCCccEEeeecCCCCCccC--cccccCccCcEeEeecCCCc---cCCccCCCCCCccEEEEecCCCCCccChhhhcCCC
Q 009084 23 NLPGLEVLFVEDCSKLDKLP--DNIGNLKSLGHISAAGSAIS---QLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLS 97 (544)
Q Consensus 23 ~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~ 97 (544)
++.+|+...|.+| .+...+ .....|++++.|||+.|-+. .+-.....+++|+.|+++.|..........-..++
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4556666666654 333333 23455666666666666544 22333445666666666665522211111123456
Q ss_pred CCCEEEEeccCCCC--CChhccCCCCccEEEEeCcc-CCCCchhhcCCCCccEEEecCCCC
Q 009084 98 SLGLLRISYSAVME--IPQEIACLSSLTGLHLSGNN-FESLPASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 98 ~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~L~~~~~ 155 (544)
+|+.|.++.|.+.. +-..+..+++|+.|++.+|. +..-..+...+..|+.|+|++|..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 67777777776653 33334456677777777663 221112233455667777776654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.2e-09 Score=106.14 Aligned_cols=198 Identities=20% Similarity=0.186 Sum_probs=133.3
Q ss_pred CCCCcEEEecCCCCcccCc--ccCCCCCccEEeeecCCCCC--ccCcccccCccCcEeEeecCCCccCCcc--CCCCCCc
Q 009084 1 MEHLKRIYLGRTAITELPS--SFENLPGLEVLFVEDCSKLD--KLPDNIGNLKSLGHISAAGSAISQLPSS--VADSNVL 74 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~L~~~~l~~lp~~--~~~l~~L 74 (544)
+++|+++.|.+..+...+. ....|++++.|||+.|-... .+-.....+++|+.|+|+.|.+.....+ -..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3578888999888876653 47789999999999863222 2333456899999999999988743332 2367889
Q ss_pred cEEEEecCCCCCccChhhhcCCCCCCEEEEeccC-CCCCChhccCCCCccEEEEeCccCCCCc--hhhcCCCCccEEEec
Q 009084 75 GILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSA-VMEIPQEIACLSSLTGLHLSGNNFESLP--ASIKQLSRLRSLHLE 151 (544)
Q Consensus 75 ~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~L~ 151 (544)
+.|.+++|.....--......+|+|+.|++..|. +........-+..|+.|+|++|++-.++ ..++.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 9999999984322212235678899999999884 3222222334678899999999887666 467888999999998
Q ss_pred CCCCCCC-CC--------CCCCCCCEEEEecCCC--CCcCCC--CCCCccEEEEeCCCCC
Q 009084 152 DCKMLQS-LP--------ELPLCLKSLELRDCKM--LQSLPA--LPLCLESLNLTGCNML 198 (544)
Q Consensus 152 ~~~~l~~-lp--------~~~~~L~~L~l~~~~~--l~~l~~--~~~~L~~L~Ls~c~~l 198 (544)
.|..-.. +| ..+++|++|++..++- ..++.. ..++|+.|.+..+.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8753211 12 2357889998876643 222222 2456777776666553
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.68 E-value=1.6e-09 Score=104.40 Aligned_cols=153 Identities=16% Similarity=0.251 Sum_probs=108.9
Q ss_pred CCCCcEEEecCCCCc-----ccCcccCCCCCccEEeeecCCCC----CccCcc-------cccCccCcEeEeecCCCc-c
Q 009084 1 MEHLKRIYLGRTAIT-----ELPSSFENLPGLEVLFVEDCSKL----DKLPDN-------IGNLKSLGHISAAGSAIS-Q 63 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~c~~l----~~lp~~-------l~~l~~L~~L~L~~~~l~-~ 63 (544)
+..+++|+|++|.+. .+-..+.+.++|+..++++- .. ..+|+. +..+++|++|+||.|.+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 356889999999886 24455777889999999872 33 234543 345779999999999876 2
Q ss_pred ----CCccCCCCCCccEEEEecCCCCCccChh-------------hhcCCCCCCEEEEeccCCCC-----CChhccCCCC
Q 009084 64 ----LPSSVADSNVLGILDFSSCKGLVSLPRS-------------LLLGLSSLGLLRISYSAVME-----IPQEIACLSS 121 (544)
Q Consensus 64 ----lp~~~~~l~~L~~L~l~~c~~l~~lp~~-------------~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~ 121 (544)
+-.-+..+..|++|.|.+|. ++..... ....-+.|+.+...+|.+.. +...+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 22345578899999999886 3332111 13455789999998888765 4455777889
Q ss_pred ccEEEEeCccCC-----CCchhhcCCCCccEEEecCCCC
Q 009084 122 LTGLHLSGNNFE-----SLPASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 122 L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~ 155 (544)
|+.+.+..|.|. .+...+..+++|+.|+|.+|..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 999999988765 2334677889999999998854
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=5.4e-09 Score=98.61 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=100.8
Q ss_pred cccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccE
Q 009084 45 IGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTG 124 (544)
Q Consensus 45 l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~ 124 (544)
+.....|..|||++|.|+.+-+++.-+++++.|+++.|. +..+.. +..+++|+.|+|++|.+.++..+-..+-|+++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 445678999999999999999999999999999999987 555555 67889999999999998887666667889999
Q ss_pred EEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCC-----CCCCCCCEEEEecCC
Q 009084 125 LHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLP-----ELPLCLKSLELRDCK 175 (544)
Q Consensus 125 L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-----~~~~~L~~L~l~~~~ 175 (544)
|.+++|.++.+. +++.+-+|..|++.+|+.- .+. ..++.|+.+.+.+++
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCC
Confidence 999999998875 7888899999999998632 111 123566666666654
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=1.9e-07 Score=102.27 Aligned_cols=105 Identities=23% Similarity=0.341 Sum_probs=92.0
Q ss_pred CccEEeeecCCCCCccCcccccCccCcEeEeecCCCc-cCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEE
Q 009084 26 GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAIS-QLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRI 104 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 104 (544)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|.....+|.. ++.+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999998777889999999999999999999998 88989999999999999999877788887 889999999999
Q ss_pred eccCCCC-CChhccCC-CCccEEEEeCcc
Q 009084 105 SYSAVME-IPQEIACL-SSLTGLHLSGNN 131 (544)
Q Consensus 105 ~~~~~~~-lp~~l~~l-~~L~~L~l~~~~ 131 (544)
++|.+.. +|..++.+ .++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9999885 88887653 467788888884
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=3.4e-07 Score=100.24 Aligned_cols=107 Identities=26% Similarity=0.342 Sum_probs=79.0
Q ss_pred CccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCC-CCchhhcCCCCccEEEe
Q 009084 73 VLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFE-SLPASIKQLSRLRSLHL 150 (544)
Q Consensus 73 ~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~L 150 (544)
.++.|+|.+|.....+|.. +..+++|+.|+|++|.+.. +|..++.+++|+.|+|++|+++ .+|..++++++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3677788887766667766 7788888888888888774 7777888888888888888877 67777888888888888
Q ss_pred cCCCCCCCCCCCC----CCCCEEEEecCCCCCcC
Q 009084 151 EDCKMLQSLPELP----LCLKSLELRDCKMLQSL 180 (544)
Q Consensus 151 ~~~~~l~~lp~~~----~~L~~L~l~~~~~l~~l 180 (544)
++|...+.+|..+ .++..+++.++..+...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 8887666666533 34456777666555443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.5e-07 Score=68.44 Aligned_cols=59 Identities=31% Similarity=0.542 Sum_probs=36.4
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCcc-CcccccCccCcEeEeecCCC
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKL-PDNIGNLKSLGHISAAGSAI 61 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~L~~~~l 61 (544)
++|++|++++|+++.+|. .+.++++|++|++++|.. ..+ |..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCcC
Confidence 456777777777776664 366677777777776533 333 33456666666666666543
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.9e-08 Score=94.99 Aligned_cols=132 Identities=24% Similarity=0.349 Sum_probs=84.8
Q ss_pred CccEEeeecCCCC-CccCcccccCccCcEeEeecCCCc-cCCccCCCCCCccEEEEecCCCCCccChh-hhcCCCCCCEE
Q 009084 26 GLEVLFVEDCSKL-DKLPDNIGNLKSLGHISAAGSAIS-QLPSSVADSNVLGILDFSSCKGLVSLPRS-LLLGLSSLGLL 102 (544)
Q Consensus 26 ~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~l~~L~~L 102 (544)
.|+.|||+..... ..+...+..+.+|+.|.|.++.+. .+-..+..-.+|+.|+++.|.+++..... ++.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777888763222 123334567778888888777776 45556677788888888888877765543 36678888888
Q ss_pred EEeccCCCC--CChhccC-CCCccEEEEeCcc--C--CCCchhhcCCCCccEEEecCCCCCC
Q 009084 103 RISYSAVME--IPQEIAC-LSSLTGLHLSGNN--F--ESLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 103 ~l~~~~~~~--lp~~l~~-l~~L~~L~l~~~~--l--~~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
++++|.+.. +...+.+ -++|+.|+++|+. + ..+..-...+++|.+|||++|..++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 888887554 2222222 2477788888762 2 2333234567778888888776554
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=1.2e-08 Score=100.48 Aligned_cols=267 Identities=20% Similarity=0.235 Sum_probs=173.3
Q ss_pred CCcEEEecCCC---CcccCcccCCCCCccEEeeecCCCCCcc--CcccccCccCcEeEe-ecCCCcc--CCccCCCCCCc
Q 009084 3 HLKRIYLGRTA---ITELPSSFENLPGLEVLFVEDCSKLDKL--PDNIGNLKSLGHISA-AGSAISQ--LPSSVADSNVL 74 (544)
Q Consensus 3 ~L~~L~L~~~~---i~~lp~~l~~l~~L~~L~L~~c~~l~~l--p~~l~~l~~L~~L~L-~~~~l~~--lp~~~~~l~~L 74 (544)
.|+.|.++|.. ...+-....++++++.|.+.+|.+++.. -..-..+++|++|++ +|..++. +-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47788888733 2244444678999999999999876542 222346899999999 4566763 22234578999
Q ss_pred cEEEEecCCCCCccCh-hhhcCCCCCCEEEEeccCCCC---CChhccCCCCccEEEEeCc-cCC--CCchhhcCCCCccE
Q 009084 75 GILDFSSCKGLVSLPR-SLLLGLSSLGLLRISYSAVME---IPQEIACLSSLTGLHLSGN-NFE--SLPASIKQLSRLRS 147 (544)
Q Consensus 75 ~~L~l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~-~l~--~lp~~l~~l~~L~~ 147 (544)
++|+++.|..+..-.- ....++..++.+.+.+|.-.+ +...-+.+.-+.++++..| .++ .+...-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999987665111 125567778888888886433 2222345566777777777 344 22222345788999
Q ss_pred EEecCCCCCCCCC-----CCCCCCCEEEEecCCCCCcC-----CCCCCCccEEEEeCCCCCCCC-----CCCCCCccEEE
Q 009084 148 LHLEDCKMLQSLP-----ELPLCLKSLELRDCKMLQSL-----PALPLCLESLNLTGCNMLRSL-----PALPLCLESLN 212 (544)
Q Consensus 148 L~L~~~~~l~~lp-----~~~~~L~~L~l~~~~~l~~l-----~~~~~~L~~L~Ls~c~~l~~l-----~~~~~~L~~L~ 212 (544)
|+.++|...+..+ ....+|+.|.+.+|..++.. ....+.|+.+++.+|.....- ...++.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 9999998765532 34578999999999876644 345677999999988765332 23389999999
Q ss_pred EeCCCCCCcC--------CCCCCCCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCCCCCCCCCCccEEeccCCCCCCC
Q 009084 213 LTGCNMLRSL--------PELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELDASVLETLSK 284 (544)
Q Consensus 213 Ls~c~~l~~l--------p~~~~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~lp~sL~~L~i~~C~~L~~ 284 (544)
|++|..++.. ......|..|.+++|+.+++-. |+.| ...++|+.+++.+|...+.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-----Le~l------------~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-----LEHL------------SICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-----HHHH------------hhCcccceeeeechhhhhh
Confidence 9998776644 1233456666666665544211 0111 1223666677777776665
Q ss_pred CC
Q 009084 285 PS 286 (544)
Q Consensus 285 ~~ 286 (544)
-+
T Consensus 442 ~~ 443 (483)
T KOG4341|consen 442 EA 443 (483)
T ss_pred hh
Confidence 54
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=1.9e-07 Score=90.31 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=112.5
Q ss_pred CCCcEEEecCC--C-C-cccCcc-------cCCCCCccEEeeecCCCCCccCc----ccccCccCcEeEeecCCCcc---
Q 009084 2 EHLKRIYLGRT--A-I-TELPSS-------FENLPGLEVLFVEDCSKLDKLPD----NIGNLKSLGHISAAGSAISQ--- 63 (544)
Q Consensus 2 ~~L~~L~L~~~--~-i-~~lp~~-------l~~l~~L~~L~L~~c~~l~~lp~----~l~~l~~L~~L~L~~~~l~~--- 63 (544)
++|++.+++.- . + .++|+. +..++.|++|+|++|..-...+. -+..+..|++|.|.+|.+..
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag 137 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG 137 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH
Confidence 46777777762 1 1 145543 45678999999999865544333 35678999999999988762
Q ss_pred -----------CCccCCCCCCccEEEEecCCCCCccChh----hhcCCCCCCEEEEeccCCCC-----CChhccCCCCcc
Q 009084 64 -----------LPSSVADSNVLGILDFSSCKGLVSLPRS----LLLGLSSLGLLRISYSAVME-----IPQEIACLSSLT 123 (544)
Q Consensus 64 -----------lp~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~ 123 (544)
.-..+++-++|+++...+|. +.+.+.. .+...+.|+.+.+..|.+.. +...+..+++|+
T Consensus 138 ~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 138 GRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE 216 (382)
T ss_pred HHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence 12345667899999999877 5554432 36677899999999998764 456688999999
Q ss_pred EEEEeCccCC-----CCchhhcCCCCccEEEecCCCC
Q 009084 124 GLHLSGNNFE-----SLPASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 124 ~L~l~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~ 155 (544)
.|+|.+|-++ .+...+..+++|+.|++++|..
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 9999999887 3444567788999999999953
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=6.3e-08 Score=101.17 Aligned_cols=189 Identities=26% Similarity=0.266 Sum_probs=107.7
Q ss_pred CCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEE
Q 009084 23 NLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLL 102 (544)
Q Consensus 23 ~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L 102 (544)
.+..++.+.++.+ .+..+-..++.+.+|..|++..|.|..+...+..+++|++|++++|. +..+.. +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhhh
Confidence 3455666666654 33333333666777777777777777766656677777777777765 555555 5566667777
Q ss_pred EEeccCCCCCChhccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCCCCCCCCC-CCCCCCEEEEecC--CCCC
Q 009084 103 RISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCKMLQSLPE-LPLCLKSLELRDC--KMLQ 178 (544)
Q Consensus 103 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~-~~~~L~~L~l~~~--~~l~ 178 (544)
++++|.+..+. .+..+++|+.+++++|.+..+... +..+.+|+.+.+.+|.....-.. ....+..+.+.+. ..+.
T Consensus 146 ~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 146 NLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred eeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence 77777776653 344467777777777777766543 46667777777777653221110 0111111222111 1111
Q ss_pred cCCCCCC-CccEEEEeCCCCCCC--CCCCCCCccEEEEeCC
Q 009084 179 SLPALPL-CLESLNLTGCNMLRS--LPALPLCLESLNLTGC 216 (544)
Q Consensus 179 ~l~~~~~-~L~~L~Ls~c~~l~~--l~~~~~~L~~L~Ls~c 216 (544)
.++.... .|+.+++++++.... ....+..+..|++.++
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred CcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 1111111 277788888776543 2222677777777763
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=9e-07 Score=65.42 Aligned_cols=55 Identities=36% Similarity=0.549 Sum_probs=21.9
Q ss_pred CCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCC
Q 009084 99 LGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDC 153 (544)
Q Consensus 99 L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~ 153 (544)
|++|++++|.+..+|. .|..+++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3334444443333332 23334444444444444443332 2344444444444443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.6e-08 Score=95.52 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=113.3
Q ss_pred CCcEEEecCCCCc--ccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEee-cCCCcc--CCccCCCCCCccEE
Q 009084 3 HLKRIYLGRTAIT--ELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAA-GSAISQ--LPSSVADSNVLGIL 77 (544)
Q Consensus 3 ~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~-~~~l~~--lp~~~~~l~~L~~L 77 (544)
.|++|||+...|+ .+..-+..|..|+.|.|.+...-..+-..+..-.+|+.|+|+ ++.+++ +.-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4789999998888 455557789999999999975555566667888999999995 456663 33346789999999
Q ss_pred EEecCCCCCccChhhhcC-CCCCCEEEEeccC--C--CCCChhccCCCCccEEEEeCc-cCC-CCchhhcCCCCccEEEe
Q 009084 78 DFSSCKGLVSLPRSLLLG-LSSLGLLRISYSA--V--MEIPQEIACLSSLTGLHLSGN-NFE-SLPASIKQLSRLRSLHL 150 (544)
Q Consensus 78 ~l~~c~~l~~lp~~~~~~-l~~L~~L~l~~~~--~--~~lp~~l~~l~~L~~L~l~~~-~l~-~lp~~l~~l~~L~~L~L 150 (544)
+++.|-.....-..++.. -++|..|+++++. + ..+..-...+++|..|||++| .++ ..-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999998655443322222 3579999999984 1 124334567999999999998 455 34446778999999999
Q ss_pred cCCCCC
Q 009084 151 EDCKML 156 (544)
Q Consensus 151 ~~~~~l 156 (544)
+.|..+
T Consensus 346 sRCY~i 351 (419)
T KOG2120|consen 346 SRCYDI 351 (419)
T ss_pred hhhcCC
Confidence 999643
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=1.1e-06 Score=91.97 Aligned_cols=149 Identities=26% Similarity=0.350 Sum_probs=111.4
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|+.|++.+|.|+.+...+..+++|++|+|++| .++.+.. +..++.|+.|++.+|.|..+.. +..+++|+.++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 46889999999999988877888999999999996 6666655 7888889999999999998764 4558999999999
Q ss_pred cCCCCCccCh-hhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCC--ccEEEecCCCCC
Q 009084 81 SCKGLVSLPR-SLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSR--LRSLHLEDCKML 156 (544)
Q Consensus 81 ~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~--L~~L~L~~~~~l 156 (544)
+|. +..+.. . ...+.+|+.+++.+|.+..+. .+..+..+..+++..|.++.+- .+..+.. |+.+++.++...
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccc
Confidence 987 455554 1 257889999999999877642 2333445555577777666443 2233333 777888777643
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=1.5e-07 Score=98.59 Aligned_cols=126 Identities=26% Similarity=0.332 Sum_probs=97.4
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
.|...+.++|.+..+..++.-++.|+.|+|++| ++..+. .+..+++|++|||+.|.+..+|..-..--+|+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 456677888888888888888999999999996 444544 578899999999999999988863322234999999987
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCC--hhccCCCCccEEEEeCccCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIP--QEIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~ 133 (544)
. ++.+.. +.++.+|+.|++++|-+.+.. ..+..+..|+.|.|.||.+-
T Consensus 243 ~-l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 A-LTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred H-HHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6 666666 778899999999998776622 23556788899999998765
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=7.1e-06 Score=89.92 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=85.5
Q ss_pred CCCcEEEecCCC-Cc-ccCcccCC-CCCccEEeeecCCCC-CccCcccccCccCcEeEeecCCCccCCccCCCCCCccEE
Q 009084 2 EHLKRIYLGRTA-IT-ELPSSFEN-LPGLEVLFVEDCSKL-DKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGIL 77 (544)
Q Consensus 2 ~~L~~L~L~~~~-i~-~lp~~l~~-l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 77 (544)
.+|+.|+++|.. +. ..|..++. ||+|+.|.+.+-... ..+-....++++|..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 368888888843 22 33333443 899999999873221 12223345788999999999988888 678888999988
Q ss_pred EEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-------hccCCCCccEEEEeCccCC
Q 009084 78 DFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-------EIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 78 ~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-------~l~~l~~L~~L~l~~~~l~ 133 (544)
.+.+-.......-..+..|++|+.||+|.......+. --..+|+|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8877442211111125678888888888765444221 1124778888888877665
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.2e-05 Score=53.45 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=21.2
Q ss_pred CCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCc
Q 009084 98 SLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLP 136 (544)
Q Consensus 98 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp 136 (544)
+|++|++++|.+.++|..++++++|+.|++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555655555555555555666666666665555443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=4.8e-07 Score=95.00 Aligned_cols=101 Identities=25% Similarity=0.262 Sum_probs=64.0
Q ss_pred cCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeC
Q 009084 50 SLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSG 129 (544)
Q Consensus 50 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 129 (544)
.|...+.++|.+..+-.++.-++.|+.|+|++|+ +..... +..++.|++|+|++|.+..+|..-..-..|..|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~--Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDN--LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHH--HHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 3555556666666666666667777777777766 333332 6667777777777777766654311112377777777
Q ss_pred ccCCCCchhhcCCCCccEEEecCCC
Q 009084 130 NNFESLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 130 ~~l~~lp~~l~~l~~L~~L~L~~~~ 154 (544)
|.++++- ++.+|.+|+.||+++|-
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNL 265 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhh
Confidence 7776665 56677777777776653
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=3.5e-05 Score=52.46 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=21.4
Q ss_pred cCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccC
Q 009084 50 SLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLP 89 (544)
Q Consensus 50 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 89 (544)
+|++|++++|+|+.+|..+++|++|+.|++++|+ +.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4566666666666666555666666666666654 44443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=3.9e-06 Score=70.75 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=28.0
Q ss_pred CCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCC
Q 009084 97 SSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 97 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~ 153 (544)
+.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|..|+..++
T Consensus 77 ~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 77 PTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred chhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 344445555555555555555555555555555555544444444444444444444
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=0.00012 Score=65.96 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=66.3
Q ss_pred ccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCC--hhccCCCCccEEE
Q 009084 49 KSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIP--QEIACLSSLTGLH 126 (544)
Q Consensus 49 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~ 126 (544)
.+...+||+.|.+..++. +..++.|.+|.+.+|. +..+.+.+...+++|+.|.+.+|++.++- ..+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345566666666655442 4456677777776655 55555543445667777777777766632 2355677888888
Q ss_pred EeCccCCCCch----hhcCCCCccEEEecCC
Q 009084 127 LSGNNFESLPA----SIKQLSRLRSLHLEDC 153 (544)
Q Consensus 127 l~~~~l~~lp~----~l~~l~~L~~L~L~~~ 153 (544)
+-+|.++.-.. .+..+++|+.||..+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88887764432 3567888888888764
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=4e-06 Score=70.67 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=89.1
Q ss_pred CccEEeeecCCCCCccCcc---cccCccCcEeEeecCCCccCCccCC-CCCCccEEEEecCCCCCccChhhhcCCCCCCE
Q 009084 26 GLEVLFVEDCSKLDKLPDN---IGNLKSLGHISAAGSAISQLPSSVA-DSNVLGILDFSSCKGLVSLPRSLLLGLSSLGL 101 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~---l~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~ 101 (544)
.+..++|+.|. +..+++. +....+|...+|++|.++.+|..+. ..+-++.|++.+|. +.++|.. +..++.|+.
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRS 104 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhh
Confidence 46678888884 4455554 4556677778999999999988775 44588999999876 8889988 888999999
Q ss_pred EEEeccCCCCCChhccCCCCccEEEEeCccCCCCchh
Q 009084 102 LRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPAS 138 (544)
Q Consensus 102 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~ 138 (544)
|+++.|.+...|..+..+.+|-.|+..+|.+..+|-.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999999988888888889999999999988888755
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=1.7e-05 Score=74.38 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=103.8
Q ss_pred CCCCcEEEecCCCCc-----ccCcccCCCCCccEEeeecCCCCC----ccCc-------ccccCccCcEeEeecCCCc-c
Q 009084 1 MEHLKRIYLGRTAIT-----ELPSSFENLPGLEVLFVEDCSKLD----KLPD-------NIGNLKSLGHISAAGSAIS-Q 63 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~c~~l~----~lp~-------~l~~l~~L~~L~L~~~~l~-~ 63 (544)
|..++.++|++|.|. .+...+.+-.+|++.++++- ..+ .+|+ .+-+|++|+..+|+.|.+. +
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 456788999999886 34445677788888888863 332 2333 3457899999999998876 4
Q ss_pred CCc----cCCCCCCccEEEEecCCCCCccChhh-------------hcCCCCCCEEEEeccCCCCCCh-----hccCCCC
Q 009084 64 LPS----SVADSNVLGILDFSSCKGLVSLPRSL-------------LLGLSSLGLLRISYSAVMEIPQ-----EIACLSS 121 (544)
Q Consensus 64 lp~----~~~~l~~L~~L~l~~c~~l~~lp~~~-------------~~~l~~L~~L~l~~~~~~~lp~-----~l~~l~~ 121 (544)
.|+ .+..-+.|.+|.+.+|. ++.+...- ...-+.|+......|.+...+. .+..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 443 45677889999998876 44433221 2345778888888887766433 2444468
Q ss_pred ccEEEEeCccCCC--C----chhhcCCCCccEEEecCCCC
Q 009084 122 LTGLHLSGNNFES--L----PASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 122 L~~L~l~~~~l~~--l----p~~l~~l~~L~~L~L~~~~~ 155 (544)
|+.+.+..|.|.. + ...+..+.+|+.|+|.+|..
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 8888888887761 1 12345677888888888753
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=7.1e-05 Score=71.26 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=50.4
Q ss_pred CCCcEEEecCCCCccc---CcccCCCCCccEEeeecCCCCCccCccc-ccCccCcEeEeecCCCc--cCCccCCCCCCcc
Q 009084 2 EHLKRIYLGRTAITEL---PSSFENLPGLEVLFVEDCSKLDKLPDNI-GNLKSLGHISAAGSAIS--QLPSSVADSNVLG 75 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~L~~c~~l~~lp~~l-~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~ 75 (544)
.+++.|||.+|.|... -..+.++|.|++|+|+.|.....+-. + ..+.+|+.|-|.++.+. .+...+..+++++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3567778888777643 33356778888888876543222211 2 34567788877777655 5555666777777
Q ss_pred EEEEecC
Q 009084 76 ILDFSSC 82 (544)
Q Consensus 76 ~L~l~~c 82 (544)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 7777766
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=6.8e-05 Score=71.38 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=87.0
Q ss_pred CCCccEEEEecCCCCCccCh--hhhcCCCCCCEEEEeccCCCCCChhc-cCCCCccEEEEeCccCC--CCchhhcCCCCc
Q 009084 71 SNVLGILDFSSCKGLVSLPR--SLLLGLSSLGLLRISYSAVMEIPQEI-ACLSSLTGLHLSGNNFE--SLPASIKQLSRL 145 (544)
Q Consensus 71 l~~L~~L~l~~c~~l~~lp~--~~~~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L 145 (544)
.+.++.|+|.+|. +.+... .++.++|.|+.|+++.|.+...-..+ ..+.+|++|.|.|+.+. ..-+.+..++.+
T Consensus 70 ~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3455555665554 332222 12456666666766666654411111 23557777777776544 444556667777
Q ss_pred cEEEecCCCCCC------CCCCCCCCCCEEEEecCCCC-----CcCCCCCCCccEEEEeCCCCCCCC----CCCCCCccE
Q 009084 146 RSLHLEDCKMLQ------SLPELPLCLKSLELRDCKML-----QSLPALPLCLESLNLTGCNMLRSL----PALPLCLES 210 (544)
Q Consensus 146 ~~L~L~~~~~l~------~lp~~~~~L~~L~l~~~~~l-----~~l~~~~~~L~~L~Ls~c~~l~~l----~~~~~~L~~ 210 (544)
+.|.++.|..-+ ....+.+.+++|+...|... ..+...++++..+-+..|++-..- ...++.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 777777663111 11223344555555555321 123344566666666666543211 111555556
Q ss_pred EEEeCCCCCCcCC-----CCCCCCCEEeEecCCCCCCC
Q 009084 211 LNLTGCNMLRSLP-----ELPLCLKYLYLGDCNMLRSL 243 (544)
Q Consensus 211 L~Ls~c~~l~~lp-----~~~~~L~~L~L~~~~~l~~l 243 (544)
|+|+. +.+.+.. ..++.|..|.+.+++....+
T Consensus 229 LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 229 LNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 66665 3444332 24566666666666554433
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=0.00011 Score=80.61 Aligned_cols=124 Identities=22% Similarity=0.223 Sum_probs=80.5
Q ss_pred CccCcEeEeecCCCc--cCCccCC-CCCCccEEEEecCCCCCc-cChhhhcCCCCCCEEEEeccCCCCCChhccCCCCcc
Q 009084 48 LKSLGHISAAGSAIS--QLPSSVA-DSNVLGILDFSSCKGLVS-LPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLT 123 (544)
Q Consensus 48 l~~L~~L~L~~~~l~--~lp~~~~-~l~~L~~L~l~~c~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~ 123 (544)
-.+|++|++++...- .-|..+| .+|.|+.|.+.+-....+ +.. ...++++|..||++++++..+ .+++.+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 357888888664322 2233343 568888888887442221 222 256788888888888888877 6788888888
Q ss_pred EEEEeCccCCCCc--hhhcCCCCccEEEecCCCCCCCC---------CCCCCCCCEEEEec
Q 009084 124 GLHLSGNNFESLP--ASIKQLSRLRSLHLEDCKMLQSL---------PELPLCLKSLELRD 173 (544)
Q Consensus 124 ~L~l~~~~l~~lp--~~l~~l~~L~~L~L~~~~~l~~l---------p~~~~~L~~L~l~~ 173 (544)
.|.+.+-.+..-. ..+.+|++|+.||++..+....- +..++.|+.|+.++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 8888776666322 35677888888888876543221 23356777777764
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.0005 Score=62.16 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=89.2
Q ss_pred cEEEecCCCCcccCcccC-CCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCC-CCCCccEEEEecC
Q 009084 5 KRIYLGRTAITELPSSFE-NLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVA-DSNVLGILDFSSC 82 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~c 82 (544)
+.++|.+.++..+.. ++ -+.+...+||++| .+..++. +..++.|..|.|+.|.|+.+-+.++ .+++|+.|.+.+|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhh-ccccccccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 356666665554333 22 2457788999986 5556555 7889999999999999998877776 4678999999997
Q ss_pred CC--CCccChhhhcCCCCCCEEEEeccCCCCCCh----hccCCCCccEEEEeCc
Q 009084 83 KG--LVSLPRSLLLGLSSLGLLRISYSAVMEIPQ----EIACLSSLTGLHLSGN 130 (544)
Q Consensus 83 ~~--l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~----~l~~l~~L~~L~l~~~ 130 (544)
+. ++++.+ +..+++|++|.+-+|...+-.. .+..+++|+.||.++-
T Consensus 99 si~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 62 334444 6788999999999998776322 3667899999998774
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00044 Score=65.07 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=76.3
Q ss_pred cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecC--CCc-cCCccCCCCCCccEEEEecCCC--CCccChhhhcC
Q 009084 21 FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGS--AIS-QLPSSVADSNVLGILDFSSCKG--LVSLPRSLLLG 95 (544)
Q Consensus 21 l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~--~l~-~lp~~~~~l~~L~~L~l~~c~~--l~~lp~~~~~~ 95 (544)
.-.+..|+.|.+.++.. ..+-. +-.+++|++|.+++| .+. .++....++++|++|++++|+. +.++++ +..
T Consensus 39 ~d~~~~le~ls~~n~gl-tt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGL-TTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKE 114 (260)
T ss_pred cccccchhhhhhhccce-eeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhh
Confidence 33466777777776533 33222 456889999999888 444 5665566779999999999862 344555 567
Q ss_pred CCCCCEEEEeccCCCCCC----hhccCCCCccEEEEeCccCCCCchh
Q 009084 96 LSSLGLLRISYSAVMEIP----QEIACLSSLTGLHLSGNNFESLPAS 138 (544)
Q Consensus 96 l~~L~~L~l~~~~~~~lp----~~l~~l~~L~~L~l~~~~l~~lp~~ 138 (544)
+.+|..|++.+|..+.+- ..+.-+++|++|+-....-.+.|.+
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence 888999999999876532 2355678888887655544455543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.87 E-value=9.1e-05 Score=78.90 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=17.3
Q ss_pred CCCccEEeeecCCCCCc--cCcccccCccCcEeEee
Q 009084 24 LPGLEVLFVEDCSKLDK--LPDNIGNLKSLGHISAA 57 (544)
Q Consensus 24 l~~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~L~ 57 (544)
+++|+.|.+.+|..+.. +-.....+++|+.|+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 222 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLS 222 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheeccc
Confidence 45555555555555443 22224455555555554
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.67 E-value=0.0021 Score=60.78 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=106.0
Q ss_pred CCCcEEEecCC--CC-c-ccCc-------ccCCCCCccEEeeecCCCCCccCcc----cccCccCcEeEeecCCCccCC-
Q 009084 2 EHLKRIYLGRT--AI-T-ELPS-------SFENLPGLEVLFVEDCSKLDKLPDN----IGNLKSLGHISAAGSAISQLP- 65 (544)
Q Consensus 2 ~~L~~L~L~~~--~i-~-~lp~-------~l~~l~~L~~L~L~~c~~l~~lp~~----l~~l~~L~~L~L~~~~l~~lp- 65 (544)
++|+..+++.- .. + ++++ .+.+||+|+..+|++|..-...|+. +.....|++|.+++|.+.-+.
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG 137 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG 137 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence 35666666652 11 1 3333 3567999999999998776666654 567789999999999876332
Q ss_pred -------------ccCCCCCCccEEEEecCCCCCccChh----hhcCCCCCCEEEEeccCCCC------CChhccCCCCc
Q 009084 66 -------------SSVADSNVLGILDFSSCKGLVSLPRS----LLLGLSSLGLLRISYSAVME------IPQEIACLSSL 122 (544)
Q Consensus 66 -------------~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~~l~~L~~L~l~~~~~~~------lp~~l~~l~~L 122 (544)
....+-+.|+......|+ +...+.. .+..-..|+.+.+..|.+.. +-..+..+.+|
T Consensus 138 ~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L 216 (388)
T COG5238 138 GRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL 216 (388)
T ss_pred hHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence 123456889999998876 4444432 13344689999999998764 22345678999
Q ss_pred cEEEEeCccCCCC-----chhhcCCCCccEEEecCCC
Q 009084 123 TGLHLSGNNFESL-----PASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 123 ~~L~l~~~~l~~l-----p~~l~~l~~L~~L~L~~~~ 154 (544)
+.|++..|-++.. ...+...+.|+.|.+.+|-
T Consensus 217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 9999999988732 2344556678999998885
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.0022 Score=60.46 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=73.0
Q ss_pred cccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC--CCCCccChhhhcCCCCCCEEEEeccCCCC--CChhccCCC
Q 009084 45 IGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC--KGLVSLPRSLLLGLSSLGLLRISYSAVME--IPQEIACLS 120 (544)
Q Consensus 45 l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c--~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~ 120 (544)
.-....|+.|++.+..++.+. .+..|++|++|.++.| +....++.. ...+++|++|++++|.+.. --..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhc
Confidence 334556666666555554332 2346889999999998 444445543 4566999999999998765 222356778
Q ss_pred CccEEEEeCccCCCCch----hhcCCCCccEEEecCCC
Q 009084 121 SLTGLHLSGNNFESLPA----SIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 121 ~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~L~~~~ 154 (544)
+|..|++..|..+.+-. .+.-+++|++|+-....
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 89999999997665431 34557888888766554
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00035 Score=74.42 Aligned_cols=108 Identities=22% Similarity=0.260 Sum_probs=60.4
Q ss_pred CCCcEEEecC-CCCcc--cCcccCCCCCccEEeeecC-CCCCccC----cccccCccCcEeEeecCC-CccC--CccCCC
Q 009084 2 EHLKRIYLGR-TAITE--LPSSFENLPGLEVLFVEDC-SKLDKLP----DNIGNLKSLGHISAAGSA-ISQL--PSSVAD 70 (544)
Q Consensus 2 ~~L~~L~L~~-~~i~~--lp~~l~~l~~L~~L~L~~c-~~l~~lp----~~l~~l~~L~~L~L~~~~-l~~l--p~~~~~ 70 (544)
+.|+.|.+.+ ..+.. +-.....+++|+.|++++| ......+ .....+.+|+.|+++.+. ++.. ......
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5677777776 45554 3344667999999999984 3333222 223455677777775554 4321 111123
Q ss_pred CCCccEEEEecCCCCCccChh-hhcCCCCCCEEEEeccCC
Q 009084 71 SNVLGILDFSSCKGLVSLPRS-LLLGLSSLGLLRISYSAV 109 (544)
Q Consensus 71 l~~L~~L~l~~c~~l~~lp~~-~~~~l~~L~~L~l~~~~~ 109 (544)
+++|+.|.+.+|..+++..-. +...+++|++|++++|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 566777776666643322211 234566666666666653
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.00042 Score=65.55 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=63.1
Q ss_pred CCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCch--hhcCCCCccEE
Q 009084 71 SNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPA--SIKQLSRLRSL 148 (544)
Q Consensus 71 l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L 148 (544)
+.+.++|++.||. +.++.- ..+|+.|+.|.|+-|.+..+. .+..|++|++|+|..|.|..+-+ .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DIsi--c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI--CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH--HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4456677777776 555544 567888888888888887753 46678889999998888876653 46788899999
Q ss_pred EecCCCCCCCC
Q 009084 149 HLEDCKMLQSL 159 (544)
Q Consensus 149 ~L~~~~~l~~l 159 (544)
.|..|+..+.-
T Consensus 94 WL~ENPCc~~a 104 (388)
T KOG2123|consen 94 WLDENPCCGEA 104 (388)
T ss_pred hhccCCccccc
Confidence 99888755443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00045 Score=65.35 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChh-hhcCCCCCCEE
Q 009084 24 LPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRS-LLLGLSSLGLL 102 (544)
Q Consensus 24 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~l~~L~~L 102 (544)
+.+.+.|+..||. +..+.- ...++.|++|.|+-|+|+.+.+ +..+++|+.|+|+.|. +.++..- .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 4455666666653 333221 3456667777777777666543 4566777777776654 4444431 25677778888
Q ss_pred EEeccCCCC-CC-----hhccCCCCccEEE
Q 009084 103 RISYSAVME-IP-----QEIACLSSLTGLH 126 (544)
Q Consensus 103 ~l~~~~~~~-lp-----~~l~~l~~L~~L~ 126 (544)
+|..|.... -+ ..+.-+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 887776443 11 1255677777775
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.85 E-value=0.029 Score=47.83 Aligned_cols=117 Identities=18% Similarity=0.327 Sum_probs=57.7
Q ss_pred cCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCCCCCccChhhhcCCCC
Q 009084 21 FENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCKGLVSLPRSLLLGLSS 98 (544)
Q Consensus 21 l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~ 98 (544)
+.++.+|+.+.+.. .+..+++ .|.++.+|+.+.+..+ +..++. .+.++++|+.+.+.+ .+..++...+..+++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 66777888888764 3455544 3677778888888664 666654 355666788888865 355666665777888
Q ss_pred CCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCc
Q 009084 99 LGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRL 145 (544)
Q Consensus 99 L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L 145 (544)
|+.+.+..+ +..++. .+..+ +|+.+.+.. .+..++. .+.+.++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 888888654 444333 35565 888887765 4444442 34444444
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.67 E-value=0.043 Score=46.78 Aligned_cols=102 Identities=15% Similarity=0.273 Sum_probs=45.5
Q ss_pred cccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCc
Q 009084 45 IGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSL 122 (544)
Q Consensus 45 l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L 122 (544)
|.++.+|+.+.+.. .+..++. .+.++++|+.+.+.+. +..++...+..+++|+.+.+.. .+..++. .+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 55566666666653 3555543 3455556777766552 5556655566666677777654 3333332 34456677
Q ss_pred cEEEEeCccCCCCch-hhcCCCCccEEEecC
Q 009084 123 TGLHLSGNNFESLPA-SIKQLSRLRSLHLED 152 (544)
Q Consensus 123 ~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~ 152 (544)
+.+.+..+ +..++. .+.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77776543 443332 23343 666666553
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.88 E-value=0.011 Score=33.46 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=11.5
Q ss_pred CCcEEEecCCCCcccCcccC
Q 009084 3 HLKRIYLGRTAITELPSSFE 22 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~ 22 (544)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666655444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.85 E-value=0.011 Score=33.46 Aligned_cols=20 Identities=50% Similarity=0.742 Sum_probs=11.4
Q ss_pred CccEEEEeCccCCCCchhhc
Q 009084 121 SLTGLHLSGNNFESLPASIK 140 (544)
Q Consensus 121 ~L~~L~l~~~~l~~lp~~l~ 140 (544)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666655443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.56 E-value=0.087 Score=27.68 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=6.4
Q ss_pred CCcEEEecCCCCcccC
Q 009084 3 HLKRIYLGRTAITELP 18 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp 18 (544)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.47 E-value=0.081 Score=27.80 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=5.2
Q ss_pred CccEEEEeCccCCCC
Q 009084 121 SLTGLHLSGNNFESL 135 (544)
Q Consensus 121 ~L~~L~l~~~~l~~l 135 (544)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.20 E-value=0.014 Score=54.18 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=63.5
Q ss_pred cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCC
Q 009084 21 FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLG 100 (544)
Q Consensus 21 l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~ 100 (544)
+..+...+.||++.+ .+..+-..+.-+..|..|+++.|.+.-+|..++.+..++.+++..|. ....|.+ ++..+.++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcc
Confidence 666777788888875 44455555677777888888888888888877777777777776654 6667776 77788888
Q ss_pred EEEEeccCCC
Q 009084 101 LLRISYSAVM 110 (544)
Q Consensus 101 ~L~l~~~~~~ 110 (544)
++++.++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888777654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.77 E-value=0.41 Score=28.05 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=15.4
Q ss_pred CCCCcEEEecCCCCcccCcc
Q 009084 1 MEHLKRIYLGRTAITELPSS 20 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~ 20 (544)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56788888888888887765
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.77 E-value=0.41 Score=28.05 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=15.4
Q ss_pred CCCCcEEEecCCCCcccCcc
Q 009084 1 MEHLKRIYLGRTAITELPSS 20 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~ 20 (544)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56788888888888887765
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.60 E-value=0.53 Score=27.58 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=14.3
Q ss_pred CCCccEEEEeCccCCCCchhh
Q 009084 119 LSSLTGLHLSGNNFESLPASI 139 (544)
Q Consensus 119 l~~L~~L~l~~~~l~~lp~~l 139 (544)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.60 E-value=0.53 Score=27.58 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=14.3
Q ss_pred CCCccEEEEeCccCCCCchhh
Q 009084 119 LSSLTGLHLSGNNFESLPASI 139 (544)
Q Consensus 119 l~~L~~L~l~~~~l~~lp~~l 139 (544)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.13 E-value=0.18 Score=45.98 Aligned_cols=62 Identities=23% Similarity=0.155 Sum_probs=32.3
Q ss_pred CCCCCCccEEEEecCCCCCccChhhhc-CCCCCCEEEEeccC-CCC-CChhccCCCCccEEEEeC
Q 009084 68 VADSNVLGILDFSSCKGLVSLPRSLLL-GLSSLGLLRISYSA-VME-IPQEIACLSSLTGLHLSG 129 (544)
Q Consensus 68 ~~~l~~L~~L~l~~c~~l~~lp~~~~~-~l~~L~~L~l~~~~-~~~-lp~~l~~l~~L~~L~l~~ 129 (544)
+.+++.++.|.+.+|..+.+..-..++ -.++|+.|++++|. +++ --..+..+++|+.|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 345555666666666655443222121 23566666666664 443 223455566666666554
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.18 E-value=0.016 Score=61.16 Aligned_cols=60 Identities=32% Similarity=0.404 Sum_probs=26.5
Q ss_pred CCCCCEEEEeccCCCC-----CChhccCCCC-ccEEEEeCccCCC-----CchhhcCC-CCccEEEecCCCC
Q 009084 96 LSSLGLLRISYSAVME-----IPQEIACLSS-LTGLHLSGNNFES-----LPASIKQL-SRLRSLHLEDCKM 155 (544)
Q Consensus 96 l~~L~~L~l~~~~~~~-----lp~~l~~l~~-L~~L~l~~~~l~~-----lp~~l~~l-~~L~~L~L~~~~~ 155 (544)
..+++.|.+.+|.++. +...+...+. +..|++..|++.. +...+..+ ..++.+++..|+.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 4455555555555443 2222333333 4445555554431 12223333 4455555555543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.22 E-value=0.37 Score=44.04 Aligned_cols=80 Identities=25% Similarity=0.256 Sum_probs=43.9
Q ss_pred CccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCC---CChhccCCCCccEEEEeCc-cCCCC-chhhcCCCCccE
Q 009084 73 VLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME---IPQEIACLSSLTGLHLSGN-NFESL-PASIKQLSRLRS 147 (544)
Q Consensus 73 ~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~-~l~~l-p~~l~~l~~L~~ 147 (544)
.++.++.+++. +...--..+..+++++.|.+.+|.-.+ +...-+-.++|+.|++++| +|++- -..+..+++|+.
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45566666644 222222225667777777777775332 1111123467777777777 66622 235566677777
Q ss_pred EEecCC
Q 009084 148 LHLEDC 153 (544)
Q Consensus 148 L~L~~~ 153 (544)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 766653
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.93 E-value=0.047 Score=50.74 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=63.7
Q ss_pred cccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccE
Q 009084 45 IGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTG 124 (544)
Q Consensus 45 l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~ 124 (544)
+........||++.|.+..+...+.-++.|..|+++.+. +..+|.. ++....+..+++..|.....|.+++..+.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 455666777888777777777777777778888887655 5666665 66666777777777777778888888888888
Q ss_pred EEEeCccCC
Q 009084 125 LHLSGNNFE 133 (544)
Q Consensus 125 L~l~~~~l~ 133 (544)
+++.++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888777644
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.39 E-value=0.017 Score=61.05 Aligned_cols=128 Identities=27% Similarity=0.329 Sum_probs=79.0
Q ss_pred ccEEeeecCCCCCc----cCcccccCccCcEeEeecCCCcc-----CCccCCCC-CCccEEEEecCCCCCc----cChhh
Q 009084 27 LEVLFVEDCSKLDK----LPDNIGNLKSLGHISAAGSAISQ-----LPSSVADS-NVLGILDFSSCKGLVS----LPRSL 92 (544)
Q Consensus 27 L~~L~L~~c~~l~~----lp~~l~~l~~L~~L~L~~~~l~~-----lp~~~~~l-~~L~~L~l~~c~~l~~----lp~~~ 92 (544)
+..|.|.+|..-.. +-..+....+|..|++++|.+.. +-..+... ..|+.|++..|..... +...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~- 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV- 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-
Confidence 67777777654432 22335567778888888777761 11222222 4566677777663222 2222
Q ss_pred hcCCCCCCEEEEeccCCCC-----CChhcc----CCCCccEEEEeCccCCC-----CchhhcCCCC-ccEEEecCCCC
Q 009084 93 LLGLSSLGLLRISYSAVME-----IPQEIA----CLSSLTGLHLSGNNFES-----LPASIKQLSR-LRSLHLEDCKM 155 (544)
Q Consensus 93 ~~~l~~L~~L~l~~~~~~~-----lp~~l~----~l~~L~~L~l~~~~l~~-----lp~~l~~l~~-L~~L~L~~~~~ 155 (544)
+.....++.++++.|.+.. ++..+. ...++++|++++|.++. +-..+...+. ++.|++..|..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 4457788888888887643 333444 47889999999998772 2223455555 77789988864
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.72 E-value=2.9 Score=24.65 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=12.9
Q ss_pred CCCcEEEecCCCCcccCc
Q 009084 2 EHLKRIYLGRTAITELPS 19 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~ 19 (544)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.14 E-value=4.6 Score=23.82 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=12.6
Q ss_pred CCCCcEEEecCCCCcccC
Q 009084 1 MEHLKRIYLGRTAITELP 18 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp 18 (544)
+++|+.|+|+.|.|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 467788888887776543
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.92 E-value=4.7 Score=23.55 Aligned_cols=14 Identities=36% Similarity=0.404 Sum_probs=6.6
Q ss_pred CccEEeccCCCCCC
Q 009084 270 CLQELDASVLETLS 283 (544)
Q Consensus 270 sL~~L~i~~C~~L~ 283 (544)
.|++|++++|+.++
T Consensus 3 ~L~~L~l~~C~~it 16 (26)
T smart00367 3 NLRELDLSGCTNIT 16 (26)
T ss_pred CCCEeCCCCCCCcC
Confidence 34444444444444
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.93 E-value=4.9 Score=22.85 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=6.4
Q ss_pred CCCcEEEecCCCCc
Q 009084 2 EHLKRIYLGRTAIT 15 (544)
Q Consensus 2 ~~L~~L~L~~~~i~ 15 (544)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555543
No 89
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=53.25 E-value=9.1 Score=21.04 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCcEEEecCCCCcccCccc
Q 009084 3 HLKRIYLGRTAITELPSSF 21 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l 21 (544)
+|..|++.+++++.++.+.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5788999999888887653
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.77 E-value=19 Score=21.47 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=9.1
Q ss_pred CCCcEEEecCCCCc
Q 009084 2 EHLKRIYLGRTAIT 15 (544)
Q Consensus 2 ~~L~~L~L~~~~i~ 15 (544)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777776664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.28 E-value=14 Score=39.10 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=33.9
Q ss_pred CCCCCCEEEEeccCCCC---CChhccCCCCccEEEEeCc--cCCCCchhhcC--CCCccEEEecCCCCCCCC
Q 009084 95 GLSSLGLLRISYSAVME---IPQEIACLSSLTGLHLSGN--NFESLPASIKQ--LSRLRSLHLEDCKMLQSL 159 (544)
Q Consensus 95 ~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~--~l~~lp~~l~~--l~~L~~L~L~~~~~l~~l 159 (544)
+.+.+..++|++|.+.. +.......++|..|+|++| .+...+ ++.+ ...|++|.+.||+..+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccch
Confidence 44556666667666554 2222334566777777776 333222 2222 234667777777655443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.56 E-value=18 Score=38.37 Aligned_cols=63 Identities=24% Similarity=0.159 Sum_probs=35.6
Q ss_pred CCCCCccEEEEecCCCCCccCh--hhhcCCCCCCEEEEecc--CCCCCChhcc--CCCCccEEEEeCccCC
Q 009084 69 ADSNVLGILDFSSCKGLVSLPR--SLLLGLSSLGLLRISYS--AVMEIPQEIA--CLSSLTGLHLSGNNFE 133 (544)
Q Consensus 69 ~~l~~L~~L~l~~c~~l~~lp~--~~~~~l~~L~~L~l~~~--~~~~lp~~l~--~l~~L~~L~l~~~~l~ 133 (544)
.+.+.+..+++++|+ +..+.. ++....++|+.|+|++| .+...+ ++. +...|++|-+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccc
Confidence 355666666777665 333322 12345677888888887 222211 111 2345788888888765
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.97 E-value=1.5e+02 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=7.5
Q ss_pred CCCCCccEEecc
Q 009084 266 EIPSCLQELDAS 277 (544)
Q Consensus 266 ~lp~sL~~L~i~ 277 (544)
.+|++|++|.+.
T Consensus 31 ~lP~sl~~L~fg 42 (44)
T PF05725_consen 31 SLPNSLKSLSFG 42 (44)
T ss_pred ccCCCceEEEee
Confidence 466677666654
Done!