Query 009084
Match_columns 544
No_of_seqs 599 out of 3563
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 18:27:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 99.9 8.3E-26 2.8E-30 247.6 20.9 296 1-310 205-577 (636)
2 4ecn_A Leucine-rich repeat pro 99.9 2.5E-25 8.6E-30 249.0 23.2 272 1-280 447-787 (876)
3 4eco_A Uncharacterized protein 99.9 1.3E-25 4.4E-30 246.1 19.7 296 1-311 248-599 (636)
4 3rgz_A Protein brassinosteroid 99.9 5.5E-26 1.9E-30 254.5 16.6 81 206-286 632-721 (768)
5 4fcg_A Uncharacterized protein 99.9 5.3E-25 1.8E-29 221.4 21.2 215 2-236 81-310 (328)
6 4ecn_A Leucine-rich repeat pro 99.9 5.9E-25 2E-29 246.0 22.3 295 1-311 490-839 (876)
7 1jl5_A Outer protein YOPM; leu 99.9 7.4E-24 2.5E-28 222.5 28.6 259 2-280 91-368 (454)
8 2id5_A Lingo-1, leucine rich r 99.9 7.1E-24 2.4E-28 224.5 26.3 275 2-280 32-331 (477)
9 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.1E-28 220.2 27.6 253 2-275 131-383 (454)
10 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-23 3.6E-28 225.5 27.0 296 2-309 21-454 (520)
11 2z81_A CD282 antigen, TOLL-lik 99.9 6.1E-24 2.1E-28 228.9 25.2 126 1-126 49-178 (549)
12 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-24 1E-28 225.6 22.2 272 1-289 41-327 (457)
13 3o6n_A APL1; leucine-rich repe 99.9 4.2E-24 1.4E-28 220.2 22.3 293 1-310 44-350 (390)
14 3rgz_A Protein brassinosteroid 99.9 8.5E-25 2.9E-29 244.9 18.4 302 2-310 200-525 (768)
15 3o6n_A APL1; leucine-rich repe 99.9 2.1E-23 7.2E-28 215.0 24.1 269 1-280 68-350 (390)
16 4fmz_A Internalin; leucine ric 99.9 1.7E-23 5.8E-28 212.0 22.7 290 1-310 43-344 (347)
17 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8E-23 2.7E-27 220.9 28.6 294 2-309 52-483 (562)
18 3v47_A TOLL-like receptor 5B a 99.9 8.7E-24 3E-28 222.2 20.3 303 2-310 30-406 (455)
19 3g06_A SSPH2 (leucine-rich rep 99.9 1E-22 3.5E-27 220.7 28.7 230 3-257 41-270 (622)
20 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-23 1.2E-27 221.5 23.9 296 1-310 44-479 (520)
21 3oja_B Anopheles plasmodium-re 99.9 2.2E-23 7.7E-28 226.8 21.4 293 1-310 50-356 (597)
22 4fmz_A Internalin; leucine ric 99.9 6.7E-23 2.3E-27 207.6 23.3 268 1-280 65-344 (347)
23 3oja_B Anopheles plasmodium-re 99.9 4.9E-23 1.7E-27 224.1 23.7 269 1-280 74-356 (597)
24 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-23 1.1E-27 217.7 21.4 246 1-262 63-321 (457)
25 2id5_A Lingo-1, leucine rich r 99.9 2.6E-22 8.7E-27 212.5 26.1 256 1-259 55-331 (477)
26 3t6q_A CD180 antigen; protein- 99.9 1.6E-22 5.5E-27 220.5 25.0 275 3-280 34-411 (606)
27 3g06_A SSPH2 (leucine-rich rep 99.9 8.5E-22 2.9E-26 213.5 29.9 256 25-310 40-295 (622)
28 3vq2_A TLR4, TOLL-like recepto 99.9 2.1E-22 7.1E-27 219.6 25.0 134 2-136 32-169 (606)
29 2z81_A CD282 antigen, TOLL-lik 99.9 7.7E-23 2.6E-27 220.3 21.2 149 2-151 26-180 (549)
30 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-22 5.8E-27 220.3 23.9 110 1-111 55-167 (606)
31 1ogq_A PGIP-2, polygalacturona 99.9 4.6E-24 1.6E-28 213.2 9.7 241 2-262 50-305 (313)
32 1o6v_A Internalin A; bacterial 99.9 3.7E-22 1.3E-26 210.6 24.7 289 3-310 47-364 (466)
33 3j0a_A TOLL-like receptor 5; m 99.9 6.1E-22 2.1E-26 224.0 27.6 156 2-157 24-188 (844)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.9E-22 2E-26 214.1 26.0 296 1-310 75-508 (562)
35 4fcg_A Uncharacterized protein 99.9 1.5E-22 5E-27 203.6 19.7 210 24-255 80-305 (328)
36 3t6q_A CD180 antigen; protein- 99.9 2E-22 6.9E-27 219.7 21.8 277 3-280 255-558 (606)
37 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-22 2.2E-26 218.7 26.2 235 2-237 25-306 (680)
38 3v47_A TOLL-like receptor 5B a 99.9 7.8E-23 2.7E-27 215.0 17.5 279 1-281 53-407 (455)
39 1o6v_A Internalin A; bacterial 99.9 9.3E-22 3.2E-26 207.6 25.6 271 1-281 67-365 (466)
40 3j0a_A TOLL-like receptor 5; m 99.9 2.8E-21 9.7E-26 218.5 29.4 277 1-279 47-391 (844)
41 1xku_A Decorin; proteoglycan, 99.9 2E-21 6.8E-26 195.5 24.6 230 3-240 32-276 (330)
42 2z63_A TOLL-like receptor 4, v 99.9 3.4E-22 1.2E-26 216.1 20.1 130 3-133 29-162 (570)
43 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.6E-26 197.7 20.6 269 3-280 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.9E-26 197.5 20.9 261 12-282 14-307 (332)
45 1xku_A Decorin; proteoglycan, 99.9 2.9E-21 9.9E-26 194.3 23.4 232 2-240 52-306 (330)
46 2z63_A TOLL-like receptor 4, v 99.9 2.2E-21 7.7E-26 209.7 22.6 152 1-153 51-210 (570)
47 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-22 1E-26 200.0 10.3 242 25-286 50-308 (313)
48 1ziw_A TOLL-like receptor 3; i 99.9 2.5E-20 8.6E-25 205.9 23.1 274 4-280 6-340 (680)
49 4g8a_A TOLL-like receptor 4; l 99.8 8E-20 2.7E-24 199.7 25.3 133 2-136 52-189 (635)
50 2z80_A TOLL-like receptor 2, v 99.8 5.8E-21 2E-25 194.0 14.5 248 6-259 35-312 (353)
51 3zyj_A Leucine-rich repeat-con 99.8 6.9E-20 2.4E-24 191.8 21.0 231 4-239 45-291 (440)
52 3zyi_A Leucine-rich repeat-con 99.8 5.7E-20 2E-24 193.1 19.8 230 4-238 56-301 (452)
53 2z66_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 187.4 13.8 229 5-238 10-259 (306)
54 2z80_A TOLL-like receptor 2, v 99.8 7.9E-20 2.7E-24 185.6 16.8 252 23-280 29-312 (353)
55 1ozn_A Reticulon 4 receptor; N 99.8 3.8E-19 1.3E-23 174.9 20.8 215 5-240 14-238 (285)
56 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 180.6 15.8 230 28-280 10-259 (306)
57 3zyi_A Leucine-rich repeat-con 99.8 5E-19 1.7E-23 185.9 21.1 207 26-237 55-276 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 8.4E-19 2.9E-23 183.5 21.9 208 26-238 44-266 (440)
59 1ozn_A Reticulon 4 receptor; N 99.8 3.1E-19 1.1E-23 175.5 17.3 198 2-218 32-237 (285)
60 1wwl_A Monocyte differentiatio 99.8 2.8E-20 9.6E-25 185.6 5.5 71 185-257 228-305 (312)
61 1wwl_A Monocyte differentiatio 99.8 1.5E-19 5.3E-24 180.2 10.6 230 3-240 44-309 (312)
62 2xwt_C Thyrotropin receptor; s 99.8 1.3E-18 4.3E-23 166.6 15.8 201 11-217 20-237 (239)
63 2o6q_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 164.2 21.1 148 3-154 17-168 (270)
64 2xwt_C Thyrotropin receptor; s 99.8 1.5E-18 5.1E-23 166.1 15.3 199 35-239 20-238 (239)
65 3o53_A Protein LRIM1, AGAP0063 99.8 3.7E-20 1.3E-24 185.2 3.2 209 21-240 30-250 (317)
66 4g8a_A TOLL-like receptor 4; l 99.8 5.8E-18 2E-22 184.9 20.9 185 119-309 370-577 (635)
67 1h6u_A Internalin H; cell adhe 99.8 1.7E-18 5.7E-23 172.4 14.7 125 22-154 38-162 (308)
68 3rfs_A Internalin B, repeat mo 99.8 2.1E-18 7.3E-23 168.4 14.0 203 2-230 41-246 (272)
69 2z62_A TOLL-like receptor 4, v 99.8 9E-18 3.1E-22 164.2 18.2 213 6-241 11-238 (276)
70 3oja_A Leucine-rich immune mol 99.8 2.8E-19 9.7E-24 189.3 8.0 211 26-247 35-258 (487)
71 1p9a_G Platelet glycoprotein I 99.8 1.1E-17 3.7E-22 164.9 18.7 149 1-154 9-159 (290)
72 2z62_A TOLL-like receptor 4, v 99.8 4.6E-18 1.6E-22 166.3 15.3 197 2-218 28-236 (276)
73 4ay9_X Follicle-stimulating ho 99.8 7.5E-17 2.6E-21 163.4 22.9 230 28-277 12-254 (350)
74 2o6q_A Variable lymphocyte rec 99.7 4.2E-17 1.4E-21 159.0 18.7 152 2-155 37-193 (270)
75 4glp_A Monocyte differentiatio 99.7 6.4E-18 2.2E-22 168.3 13.0 214 3-218 65-306 (310)
76 4glp_A Monocyte differentiatio 99.7 1.1E-17 3.6E-22 166.7 14.2 211 25-238 64-305 (310)
77 3rfs_A Internalin B, repeat mo 99.7 1.1E-17 3.7E-22 163.4 13.2 177 1-183 62-241 (272)
78 3o53_A Protein LRIM1, AGAP0063 99.7 5.2E-18 1.8E-22 169.5 10.3 210 2-224 34-256 (317)
79 1p9a_G Platelet glycoprotein I 99.7 5.4E-17 1.8E-21 160.0 16.5 156 2-161 31-189 (290)
80 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.5E-21 162.4 19.0 228 5-237 12-256 (350)
81 3m19_A Variable lymphocyte rec 99.7 9.7E-17 3.3E-21 154.6 17.5 151 3-156 15-168 (251)
82 3ogk_B Coronatine-insensitive 99.7 4.8E-19 1.7E-23 192.3 0.4 262 46-315 217-528 (592)
83 4ezg_A Putative uncharacterize 99.7 4.4E-17 1.5E-21 151.0 12.9 147 2-154 44-192 (197)
84 1h6u_A Internalin H; cell adhe 99.7 1E-16 3.6E-21 159.4 16.0 187 1-198 40-230 (308)
85 3m19_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 154.1 15.8 153 2-155 35-191 (251)
86 3oja_A Leucine-rich immune mol 99.7 2E-17 6.9E-22 175.1 10.8 181 47-237 32-224 (487)
87 2ast_B S-phase kinase-associat 99.7 1.9E-18 6.5E-23 173.9 2.0 237 4-249 49-315 (336)
88 1h6t_A Internalin B; cell adhe 99.7 1.2E-16 4E-21 157.6 14.2 168 2-198 46-213 (291)
89 3cvr_A Invasion plasmid antige 99.7 5.3E-16 1.8E-20 166.1 16.3 188 3-226 60-250 (571)
90 3e6j_A Variable lymphocyte rec 99.7 6.9E-16 2.4E-20 146.5 15.3 149 4-155 21-171 (229)
91 2ast_B S-phase kinase-associat 99.7 2.7E-18 9.3E-23 172.8 -1.7 229 25-259 47-304 (336)
92 1z7x_W Ribonuclease inhibitor; 99.7 9.5E-19 3.3E-23 184.0 -5.5 304 1-315 27-413 (461)
93 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.7E-23 183.5 -5.3 276 1-280 55-409 (461)
94 2o6s_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 144.9 13.4 171 5-182 10-183 (208)
95 2v9t_B SLIT homolog 2 protein 99.7 1E-15 3.6E-20 144.3 14.6 147 5-155 14-164 (220)
96 1m9s_A Internalin B; cell inva 99.6 6.4E-16 2.2E-20 167.1 14.1 144 2-154 43-186 (605)
97 1xeu_A Internalin C; cellular 99.6 1E-15 3.6E-20 148.5 12.5 162 3-175 20-183 (263)
98 2ca6_A RAN GTPase-activating p 99.6 8.6E-18 2.9E-22 172.7 -2.9 226 17-243 24-319 (386)
99 2v70_A SLIT-2, SLIT homolog 2 99.6 2.7E-15 9.2E-20 141.5 14.3 147 5-155 14-165 (220)
100 1h6t_A Internalin B; cell adhe 99.6 1.6E-15 5.5E-20 149.4 13.1 146 1-155 67-212 (291)
101 2p1m_B Transport inhibitor res 99.6 2.2E-17 7.5E-22 179.2 -1.4 125 1-127 104-242 (594)
102 2o6s_A Variable lymphocyte rec 99.6 1.7E-15 6E-20 141.4 11.8 157 2-166 28-188 (208)
103 3cvr_A Invasion plasmid antige 99.6 6.6E-15 2.2E-19 157.6 16.8 182 50-248 60-251 (571)
104 1xeu_A Internalin C; cellular 99.6 8.8E-16 3E-20 149.0 8.5 163 24-197 18-184 (263)
105 3ogk_B Coronatine-insensitive 99.6 5.9E-16 2E-20 167.9 7.3 279 1-286 191-529 (592)
106 1m9s_A Internalin B; cell inva 99.6 9E-15 3.1E-19 158.2 14.6 148 1-157 64-211 (605)
107 2xot_A Amphoterin-induced prot 99.6 7.3E-15 2.5E-19 149.4 12.4 166 5-175 21-200 (361)
108 2ell_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 133.7 9.3 132 22-155 21-159 (168)
109 3goz_A Leucine-rich repeat-con 99.6 5E-16 1.7E-20 158.1 3.5 234 6-242 2-299 (362)
110 1dce_A Protein (RAB geranylger 99.6 1.4E-16 4.7E-21 171.3 -2.9 170 1-174 348-543 (567)
111 2xot_A Amphoterin-induced prot 99.5 1.3E-14 4.5E-19 147.5 11.5 164 28-197 21-201 (361)
112 2ell_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 128.1 12.2 134 2-138 24-165 (168)
113 2v9t_B SLIT homolog 2 protein 99.5 3.2E-14 1.1E-18 134.1 12.7 131 2-133 32-165 (220)
114 2ca6_A RAN GTPase-activating p 99.5 3.7E-16 1.2E-20 160.5 -0.9 220 1-221 31-318 (386)
115 4ezg_A Putative uncharacterize 99.5 1.8E-14 6.2E-19 133.3 10.6 129 1-133 65-194 (197)
116 3goz_A Leucine-rich repeat-con 99.5 6.5E-16 2.2E-20 157.2 0.8 206 30-238 3-264 (362)
117 4b8c_D Glucose-repressible alc 99.5 1.2E-15 4.2E-20 168.9 0.5 156 3-160 174-333 (727)
118 2p1m_B Transport inhibitor res 99.5 4.8E-16 1.6E-20 168.6 -3.2 303 1-311 155-518 (594)
119 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 129.5 15.1 125 27-155 21-147 (229)
120 2v70_A SLIT-2, SLIT homolog 2 99.5 8.7E-14 3E-18 131.1 11.4 131 2-133 32-166 (220)
121 2je0_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 124.9 7.0 128 23-152 15-149 (149)
122 1a9n_A U2A', U2A'; complex (nu 99.5 9.6E-14 3.3E-18 125.9 8.1 130 21-154 15-151 (176)
123 4b8c_D Glucose-repressible alc 99.4 1.3E-14 4.4E-19 160.7 2.4 157 12-174 211-369 (727)
124 1w8a_A SLIT protein; signaling 99.4 3.8E-13 1.3E-17 123.8 11.9 125 5-133 11-139 (192)
125 2wfh_A SLIT homolog 2 protein 99.4 7.7E-13 2.6E-17 121.9 12.8 123 5-131 13-137 (193)
126 2je0_A Acidic leucine-rich nuc 99.4 7E-14 2.4E-18 123.1 5.3 125 2-129 17-149 (149)
127 1a9n_A U2A', U2A'; complex (nu 99.4 2.1E-13 7.3E-18 123.6 6.9 130 1-134 18-154 (176)
128 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.6E-17 120.2 12.1 124 28-155 13-138 (193)
129 2o6r_A Variable lymphocyte rec 99.4 3.7E-12 1.2E-16 115.5 13.2 127 4-134 9-138 (177)
130 1w8a_A SLIT protein; signaling 99.4 2.8E-12 9.5E-17 118.0 10.8 124 28-155 11-138 (192)
131 1ds9_A Outer arm dynein; leuci 99.3 1.5E-14 5E-19 134.0 -4.8 141 4-149 25-180 (198)
132 1dce_A Protein (RAB geranylger 99.3 3.1E-12 1.1E-16 137.4 10.5 120 26-150 442-567 (567)
133 2o6r_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 110.1 13.0 127 26-156 8-137 (177)
134 1ds9_A Outer arm dynein; leuci 99.2 3.2E-13 1.1E-17 124.9 -5.1 130 23-156 16-153 (198)
135 2r9u_A Variable lymphocyte rec 99.2 9.4E-11 3.2E-15 105.9 11.2 106 28-137 15-122 (174)
136 2r9u_A Variable lymphocyte rec 99.2 1E-10 3.4E-15 105.7 10.2 100 52-154 15-116 (174)
137 3g39_A Variable lymphocyte rec 99.2 1.7E-10 5.8E-15 103.7 11.2 104 28-135 12-117 (170)
138 3g39_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 102.3 11.1 102 5-109 12-114 (170)
139 3sb4_A Hypothetical leucine ri 99.0 8.3E-10 2.8E-14 110.4 11.7 185 1-191 48-327 (329)
140 3sb4_A Hypothetical leucine ri 99.0 1.7E-09 5.8E-14 108.1 10.7 150 1-154 100-308 (329)
141 4fdw_A Leucine rich hypothetic 98.9 9.7E-08 3.3E-12 97.9 19.9 141 4-153 137-281 (401)
142 2ifg_A High affinity nerve gro 98.9 5.6E-09 1.9E-13 105.0 10.3 102 30-133 13-116 (347)
143 2ifg_A High affinity nerve gro 98.9 6.4E-09 2.2E-13 104.6 10.2 102 53-155 12-115 (347)
144 3un9_A NLR family member X1; l 98.9 1.7E-10 5.7E-15 117.4 -1.5 151 2-154 72-250 (372)
145 4fdw_A Leucine rich hypothetic 98.7 7.8E-07 2.7E-11 91.1 19.5 160 3-171 158-330 (401)
146 2ra8_A Uncharacterized protein 98.6 1.9E-08 6.4E-13 101.5 5.3 155 18-174 132-317 (362)
147 3un9_A NLR family member X1; l 98.6 4.8E-09 1.7E-13 106.5 -1.2 131 2-134 101-253 (372)
148 4fs7_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 89.9 15.2 126 21-151 67-216 (394)
149 2ra8_A Uncharacterized protein 98.3 3.5E-07 1.2E-11 92.1 4.8 151 1-154 138-318 (362)
150 1io0_A Tropomodulin; LRR prote 98.0 1.6E-06 5.6E-11 78.6 2.1 107 46-154 33-162 (185)
151 3e4g_A ATP synthase subunit S, 97.9 9.6E-06 3.3E-10 72.2 6.0 17 140-156 136-152 (176)
152 3e4g_A ATP synthase subunit S, 97.9 1.6E-05 5.4E-10 70.8 7.0 93 41-133 53-153 (176)
153 1io0_A Tropomodulin; LRR prote 97.9 1.7E-06 5.7E-11 78.5 0.6 113 19-133 30-164 (185)
154 4fs7_A Uncharacterized protein 97.8 0.00037 1.3E-08 70.9 16.3 264 1-287 70-373 (394)
155 3rw6_A Nuclear RNA export fact 97.6 9.8E-06 3.4E-10 77.6 0.3 62 95-157 168-234 (267)
156 4h09_A Hypothetical leucine ri 97.6 0.0093 3.2E-07 59.9 22.1 119 2-129 46-167 (379)
157 3rw6_A Nuclear RNA export fact 97.5 5E-05 1.7E-09 72.7 3.7 78 46-126 167-257 (267)
158 4gt6_A Cell surface protein; l 97.4 0.0065 2.2E-07 61.6 19.1 122 3-129 65-191 (394)
159 4gt6_A Cell surface protein; l 96.7 0.0057 2E-07 62.0 10.3 126 20-153 260-388 (394)
160 4h09_A Hypothetical leucine ri 96.7 0.014 4.9E-07 58.5 12.9 126 22-152 191-319 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.2 0.0066 2.2E-07 54.9 2.0 104 48-153 40-167 (197)
162 3rfe_A Platelet glycoprotein I 94.7 0.041 1.4E-06 46.1 5.4 53 53-108 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.3 0.02 6.8E-07 51.7 2.8 84 69-153 38-136 (197)
164 3rfe_A Platelet glycoprotein I 93.7 0.1 3.5E-06 43.6 5.8 34 50-83 32-66 (130)
165 3ukw_C Bimax1 peptide; arm rep 80.4 0.57 1.9E-05 25.7 0.9 12 526-537 16-27 (28)
166 2lz0_A Uncharacterized protein 36.0 46 0.0016 25.7 4.6 46 11-58 5-52 (100)
167 2lz0_A Uncharacterized protein 26.8 76 0.0026 24.4 4.5 12 93-104 16-27 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.3e-26 Score=247.59 Aligned_cols=296 Identities=20% Similarity=0.265 Sum_probs=235.0
Q ss_pred CCCCcEEEecCCCCcc------------------cCcccC--CCCCccEEeeecCCCCCccCcccccCccCcEeEeecCC
Q 009084 1 MEHLKRIYLGRTAITE------------------LPSSFE--NLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSA 60 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~------------------lp~~l~--~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 60 (544)
|++|++|+|++|.++. +|..++ ++++|++|+|++|...+.+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5789999999999998 999998 99999999999998889999999999999999999998
Q ss_pred -Ccc--CCccCCCC------CCccEEEEecCCCCCccCh--hhhcCCCCCCEEEEeccCCC-CCChhccCCCCccEEEEe
Q 009084 61 -ISQ--LPSSVADS------NVLGILDFSSCKGLVSLPR--SLLLGLSSLGLLRISYSAVM-EIPQEIACLSSLTGLHLS 128 (544)
Q Consensus 61 -l~~--lp~~~~~l------~~L~~L~l~~c~~l~~lp~--~~~~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~ 128 (544)
++. +|..++.+ ++|+.|++++|. +..+|. . +..+++|+.|++++|.+. .+| .++.+++|+.|+++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 884 89888776 999999999987 558887 5 899999999999999999 698 88999999999999
Q ss_pred CccCCCCchhhcCCCC-ccEEEecCCCCCCCCCCCC-----CCCCEEEEecCCCCCcCCCCCC----------CccEEEE
Q 009084 129 GNNFESLPASIKQLSR-LRSLHLEDCKMLQSLPELP-----LCLKSLELRDCKMLQSLPALPL----------CLESLNL 192 (544)
Q Consensus 129 ~~~l~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~~~-----~~L~~L~l~~~~~l~~l~~~~~----------~L~~L~L 192 (544)
+|.++.+|..+..+++ |+.|++++|... .+|..+ ++|+.|+++++.....+|..+. +|+.|++
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 9999999999999999 999999999844 777643 3688999988876666655444 7888999
Q ss_pred eCCCCCCCCCCC----CCCccEEEEeCCCCCCcCCCCC-C----------CCCEEeEecCCCCCCCCccc-----CCCCe
Q 009084 193 TGCNMLRSLPAL----PLCLESLNLTGCNMLRSLPELP-L----------CLKYLYLGDCNMLRSLPELS-----LCLQS 252 (544)
Q Consensus 193 s~c~~l~~l~~~----~~~L~~L~Ls~c~~l~~lp~~~-~----------~L~~L~L~~~~~l~~lp~~~-----~~L~~ 252 (544)
++|... .+|.. +++|++|+|++| .+..+|... . +|+.|++++|... .+|..+ ++|+.
T Consensus 441 s~N~l~-~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 441 SNNQIS-KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVG 517 (636)
T ss_dssp CSSCCC-SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCE
T ss_pred cCCccC-cCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCE
Confidence 998876 56653 788999999885 455777543 1 7889999888655 676543 56888
Q ss_pred eeeccCCCCCCCCC---CCCCccEEeccCCC------CCCCCCccccccCCCCCCCCCeEEEEecCC
Q 009084 253 LNAWNCNRLQSLPE---IPSCLQELDASVLE------TLSKPSPDLLQWAPGSLESQPIYFGFTNCL 310 (544)
Q Consensus 253 L~l~~c~~L~~l~~---lp~sL~~L~i~~C~------~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~ 310 (544)
|++.++. +..+|. -.++|+.|++++|. -...+|..+... ..++.|++.+|.
T Consensus 518 L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~ 577 (636)
T 4eco_A 518 IDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC------PSLTQLQIGSND 577 (636)
T ss_dssp EECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC------SSCCEEECCSSC
T ss_pred EECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC------CCCCEEECCCCc
Confidence 8888854 444664 23678888885533 344444433221 124667777664
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.5e-25 Score=249.02 Aligned_cols=272 Identities=20% Similarity=0.275 Sum_probs=215.4
Q ss_pred CCCCcEEEecCCCCcc------------------cCcccC--CCCCccEEeeecCCCCCccCcccccCccCcEeEeecCC
Q 009084 1 MEHLKRIYLGRTAITE------------------LPSSFE--NLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSA 60 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~------------------lp~~l~--~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 60 (544)
|++|++|+|++|.++. +|..++ ++++|++|+|++|...+.+|..++++++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999998 999888 99999999999998899999999999999999999998
Q ss_pred -Ccc--CCccCCCC-------CCccEEEEecCCCCCccCh--hhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEe
Q 009084 61 -ISQ--LPSSVADS-------NVLGILDFSSCKGLVSLPR--SLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLS 128 (544)
Q Consensus 61 -l~~--lp~~~~~l-------~~L~~L~l~~c~~l~~lp~--~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 128 (544)
++. +|..++++ ++|+.|++++|. +..+|. . +.++++|+.|++++|.+..+| .++.+++|+.|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS-LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH-HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh-hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 874 78765554 499999999988 458888 5 899999999999999999898 89999999999999
Q ss_pred CccCCCCchhhcCCCC-ccEEEecCCCCCCCCCCCC-----CCCCEEEEecCCCCCcCCCC--------CCCccEEEEeC
Q 009084 129 GNNFESLPASIKQLSR-LRSLHLEDCKMLQSLPELP-----LCLKSLELRDCKMLQSLPAL--------PLCLESLNLTG 194 (544)
Q Consensus 129 ~~~l~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~~~-----~~L~~L~l~~~~~l~~l~~~--------~~~L~~L~Ls~ 194 (544)
+|.++.+|..+..+++ |+.|+|++|.. ..+|..+ ++|+.|+++++.....+|.. ..+|+.|+|++
T Consensus 604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SSCCSCCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred CCccccchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 9999999999999999 99999999974 4777643 23888999887655444322 23688888888
Q ss_pred CCCCCCCCCC----CCCccEEEEeCCCCCCcCCCCCC-----------CCCEEeEecCCCCCCCCccc-----CCCCeee
Q 009084 195 CNMLRSLPAL----PLCLESLNLTGCNMLRSLPELPL-----------CLKYLYLGDCNMLRSLPELS-----LCLQSLN 254 (544)
Q Consensus 195 c~~l~~l~~~----~~~L~~L~Ls~c~~l~~lp~~~~-----------~L~~L~L~~~~~l~~lp~~~-----~~L~~L~ 254 (544)
|... .+|.. +++|+.|+|++| .+..+|.... +|+.|+|++|... .+|..+ ++|+.|+
T Consensus 683 N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 683 NEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp SCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEE
T ss_pred CcCC-ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEE
Confidence 8776 55543 678888888884 5557775431 6888888887544 666543 5678888
Q ss_pred eccCCCCCCCCC---CCCCccEEeccCCC
Q 009084 255 AWNCNRLQSLPE---IPSCLQELDASVLE 280 (544)
Q Consensus 255 l~~c~~L~~l~~---lp~sL~~L~i~~C~ 280 (544)
++++ .+..+|. -.++|+.|++++|+
T Consensus 760 Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 760 VSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred eCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 8775 3444553 22578888887633
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.3e-25 Score=246.06 Aligned_cols=296 Identities=18% Similarity=0.245 Sum_probs=244.5
Q ss_pred CCCCcEEEecCCCCc-ccCcccCCCCCccEEeeecCCCCC--ccCcccccC------ccCcEeEeecCCCccCCc--cCC
Q 009084 1 MEHLKRIYLGRTAIT-ELPSSFENLPGLEVLFVEDCSKLD--KLPDNIGNL------KSLGHISAAGSAISQLPS--SVA 69 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~l~--~lp~~l~~l------~~L~~L~L~~~~l~~lp~--~~~ 69 (544)
|++|++|+|++|.+. .+|..++++++|++|++++|..+. .+|..++.+ ++|++|++++|.++.+|. .++
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~ 327 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence 578999999999876 789899999999999999987344 699888876 999999999999999999 999
Q ss_pred CCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCC-ccEEEEeCccCCCCchhhcCCC--Ccc
Q 009084 70 DSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSS-LTGLHLSGNNFESLPASIKQLS--RLR 146 (544)
Q Consensus 70 ~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~-L~~L~l~~~~l~~lp~~l~~l~--~L~ 146 (544)
++++|+.|++++|...+.+| . +..+++|+.|++++|.+..+|..++.+++ |++|++++|.++.+|..+..++ +|+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred cCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 99999999999998555888 4 88999999999999999999999999999 9999999999999998877655 899
Q ss_pred EEEecCCCCCCCCCCCC----------CCCCEEEEecCCCCCcCCC----CCCCccEEEEeCCCCCCCCCCC-CC-----
Q 009084 147 SLHLEDCKMLQSLPELP----------LCLKSLELRDCKMLQSLPA----LPLCLESLNLTGCNMLRSLPAL-PL----- 206 (544)
Q Consensus 147 ~L~L~~~~~l~~lp~~~----------~~L~~L~l~~~~~l~~l~~----~~~~L~~L~Ls~c~~l~~l~~~-~~----- 206 (544)
.|++++|......|..+ .+|+.|+++++. ++.+|. .+++|+.|++++|.+. .+|.. +.
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccc
Confidence 99999998776666543 388999998874 446765 3678999999999887 66654 22
Q ss_pred -----CccEEEEeCCCCCCcCCC-----CCCCCCEEeEecCCCCCCCCccc---CCCCeeeecc------CCCCCCCCC-
Q 009084 207 -----CLESLNLTGCNMLRSLPE-----LPLCLKYLYLGDCNMLRSLPELS---LCLQSLNAWN------CNRLQSLPE- 266 (544)
Q Consensus 207 -----~L~~L~Ls~c~~l~~lp~-----~~~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~------c~~L~~l~~- 266 (544)
+|+.|+|++| .+..+|. .+++|+.|+|++|...+ +|..+ ..|+.|++.+ +.....+|.
T Consensus 484 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 8999999995 5558885 45689999999997766 77654 6789999955 334455553
Q ss_pred --CCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCCC
Q 009084 267 --IPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCLK 311 (544)
Q Consensus 267 --lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~~ 311 (544)
-.++|++|++++|.- +.+|..+. ..++.|++.+|+-
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~~~--------~~L~~L~Ls~N~l 599 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEKIT--------PNISVLDIKDNPN 599 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCC--------TTCCEEECCSCTT
T ss_pred HhcCCCCCEEECCCCcC-CccCHhHh--------CcCCEEECcCCCC
Confidence 236899999999976 77775533 2458899998864
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5.5e-26 Score=254.50 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=44.4
Q ss_pred CCccEEEEeCCCCCCcCCCCC---CCCCEEeEecCCCCCCCCccc---CCCCeeeeccCCCCCCCCCC---CCCccEEec
Q 009084 206 LCLESLNLTGCNMLRSLPELP---LCLKYLYLGDCNMLRSLPELS---LCLQSLNAWNCNRLQSLPEI---PSCLQELDA 276 (544)
Q Consensus 206 ~~L~~L~Ls~c~~l~~lp~~~---~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~~l---p~sL~~L~i 276 (544)
++|+.|+|++|...+.+|..+ +.|+.|+|++|...+.+|..+ ..|+.|+++++.--..+|.. .++|++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 455666666655555666433 456666666666666666544 34556666665444455531 245666666
Q ss_pred cCCCCCCCCC
Q 009084 277 SVLETLSKPS 286 (544)
Q Consensus 277 ~~C~~L~~~~ 286 (544)
++|.--..+|
T Consensus 712 s~N~l~g~iP 721 (768)
T 3rgz_A 712 SNNNLSGPIP 721 (768)
T ss_dssp CSSEEEEECC
T ss_pred cCCcccccCC
Confidence 6665433343
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.3e-25 Score=221.44 Aligned_cols=215 Identities=27% Similarity=0.440 Sum_probs=178.9
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
.++++|+|+++.++.+|..+..+++|++|+|++|. +..+|..++++++|++|++++|.++.+|..++++++|+.|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 57899999999999999999999999999999975 55999999999999999999999999999999999999999999
Q ss_pred CCCCCccChhhhc---------CCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecC
Q 009084 82 CKGLVSLPRSLLL---------GLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLED 152 (544)
Q Consensus 82 c~~l~~lp~~~~~---------~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~ 152 (544)
|..++.+|.. +. .+++|++|++++|.+..+|..++.+++|++|++++|.++.+|..+..+++|+.|++++
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 9988888876 43 4999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCCC---
Q 009084 153 CKMLQSLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPELP--- 226 (544)
Q Consensus 153 ~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~--- 226 (544)
|...+.+|..+. .+++|+.|+|++|+..+.+|.. +++|+.|+|++|+.++.+|..+
T Consensus 239 n~~~~~~p~~~~------------------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 239 CTALRNYPPIFG------------------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CTTCCBCCCCTT------------------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CcchhhhHHHhc------------------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 988777665431 1234555555555555555543 6677777777777777777654
Q ss_pred CCCCEEeEec
Q 009084 227 LCLKYLYLGD 236 (544)
Q Consensus 227 ~~L~~L~L~~ 236 (544)
++|+.+++..
T Consensus 301 ~~L~~l~l~~ 310 (328)
T 4fcg_A 301 PANCIILVPP 310 (328)
T ss_dssp CTTCEEECCG
T ss_pred cCceEEeCCH
Confidence 4455555544
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=5.9e-25 Score=246.04 Aligned_cols=295 Identities=18% Similarity=0.239 Sum_probs=241.7
Q ss_pred CCCCcEEEecCCCCc-ccCcccCCCCCccEEeeecCCCCC--ccCcccccCc-------cCcEeEeecCCCccCCc--cC
Q 009084 1 MEHLKRIYLGRTAIT-ELPSSFENLPGLEVLFVEDCSKLD--KLPDNIGNLK-------SLGHISAAGSAISQLPS--SV 68 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~l~--~lp~~l~~l~-------~L~~L~L~~~~l~~lp~--~~ 68 (544)
|++|++|+|++|.+. .+|..++++++|+.|+|++|..+. .+|..+++++ +|++|++++|.+..+|. .+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 578999999998865 889889999999999999987354 5888777766 99999999999999999 99
Q ss_pred CCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCC-ccEEEEeCccCCCCchhhcCCCC--c
Q 009084 69 ADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSS-LTGLHLSGNNFESLPASIKQLSR--L 145 (544)
Q Consensus 69 ~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~-L~~L~l~~~~l~~lp~~l~~l~~--L 145 (544)
+++++|+.|++++|. +..+| . +..+++|+.|++++|.+..+|..+..+++ |+.|++++|.++.+|..+..++. |
T Consensus 570 ~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp TTCTTCCEEECTTSC-CCBCC-C-CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hcCCCCCEEECCCCC-cccch-h-hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 999999999999988 55888 3 89999999999999999999999999999 99999999999999988877655 9
Q ss_pred cEEEecCCCCCCCCCCCC--------CCCCEEEEecCCCCCcCCC----CCCCccEEEEeCCCCCCCCCCC-CC------
Q 009084 146 RSLHLEDCKMLQSLPELP--------LCLKSLELRDCKMLQSLPA----LPLCLESLNLTGCNMLRSLPAL-PL------ 206 (544)
Q Consensus 146 ~~L~L~~~~~l~~lp~~~--------~~L~~L~l~~~~~l~~l~~----~~~~L~~L~Ls~c~~l~~l~~~-~~------ 206 (544)
+.|++++|.....+|.++ .+|+.|++++|. +..+|. .+++|+.|+|++|.+. .+|.. +.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence 999999998766555433 479999998775 446764 3578999999999876 66654 21
Q ss_pred ----CccEEEEeCCCCCCcCCC-----CCCCCCEEeEecCCCCCCCCccc---CCCCeeeecc------CCCCCCCCC--
Q 009084 207 ----CLESLNLTGCNMLRSLPE-----LPLCLKYLYLGDCNMLRSLPELS---LCLQSLNAWN------CNRLQSLPE-- 266 (544)
Q Consensus 207 ----~L~~L~Ls~c~~l~~lp~-----~~~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~------c~~L~~l~~-- 266 (544)
+|+.|+|++| .+..+|. .+++|+.|+|++|...+ +|..+ .+|+.|++.+ +.....+|.
T Consensus 725 ~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 8999999996 5558885 34789999999997655 77544 6789999976 334455553
Q ss_pred -CCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCCC
Q 009084 267 -IPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCLK 311 (544)
Q Consensus 267 -lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~~ 311 (544)
-.++|+.|++++|.- +.+|.... ..++.|++.+|+-
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~--------~~L~~LdLs~N~l 839 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKLT--------PQLYILDIADNPN 839 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC--------SSSCEEECCSCTT
T ss_pred hcCCCCCEEECCCCCC-CccCHhhc--------CCCCEEECCCCCC
Confidence 236899999999975 88876533 2458899999864
No 7
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=7.4e-24 Score=222.49 Aligned_cols=259 Identities=29% Similarity=0.436 Sum_probs=132.3
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCC-------------------CCCccCcccccCccCcEeEeecCCCc
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCS-------------------KLDKLPDNIGNLKSLGHISAAGSAIS 62 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~-------------------~l~~lp~~l~~l~~L~~L~L~~~~l~ 62 (544)
++|++|++++|.++.+|.. +++|++|++++|. .+..+|+ ++++++|++|++++|.++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCCcCc
Confidence 3566666666666665542 2444444444431 2233442 444555555555555444
Q ss_pred cCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCC
Q 009084 63 QLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQL 142 (544)
Q Consensus 63 ~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l 142 (544)
.+|..+ .+|+.|++++|. +..+|. +..+++|+.|++++|.+..+|.. .++|++|++++|.++.+| .++.+
T Consensus 167 ~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l 236 (454)
T 1jl5_A 167 KLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELP-ELQNL 236 (454)
T ss_dssp CCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCC-CCTTC
T ss_pred ccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCccc-ccCCC
Confidence 444322 244555555443 333442 44555555555555555444432 135555555555555555 35555
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcC
Q 009084 143 SRLRSLHLEDCKMLQSLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSL 222 (544)
Q Consensus 143 ~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~l 222 (544)
++|+.|++++|. +..+|..+++|+.|+++++. ++.+|..+.+|+.|++++|...+ ++...++|+.|++++ +.+..+
T Consensus 237 ~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~-N~l~~i 312 (454)
T 1jl5_A 237 PFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASS-NEIRSL 312 (454)
T ss_dssp TTCCEEECCSSC-CSSCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCS-SCCSEE
T ss_pred CCCCEEECCCCc-CCcccccccccCEEECCCCc-ccccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcC-CcCCcc
Confidence 556666665554 33445555556666665442 33455555556666666655433 223335566666655 334445
Q ss_pred CCCCCCCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCCCCCCCCCCccEEeccCCC
Q 009084 223 PELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELDASVLE 280 (544)
Q Consensus 223 p~~~~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~lp~sL~~L~i~~C~ 280 (544)
+....+|+.|++++|.. +.+|..+.+|+.|++.++ .++.+|..+++|++|+++++.
T Consensus 313 ~~~~~~L~~L~Ls~N~l-~~lp~~~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 313 CDLPPSLEELNVSNNKL-IELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP 368 (454)
T ss_dssp CCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC
T ss_pred cCCcCcCCEEECCCCcc-ccccccCCcCCEEECCCC-ccccccchhhhccEEECCCCC
Confidence 44445666666666543 235555556666666654 444555555566666666553
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=7.1e-24 Score=224.46 Aligned_cols=275 Identities=24% Similarity=0.258 Sum_probs=199.4
Q ss_pred CCCcEEEecCCCCcccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 79 (544)
++|++|+|++|.++.++ ..+.++++|++|+|++|......|..++++++|++|+|++|.++.+|.. ++++++|+.|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46888999999888775 4588899999999998755455577788899999999999988888764 678899999999
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~ 157 (544)
++|. +..++...+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.++.++. .+.++++|+.|++++|....
T Consensus 112 s~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 9887 444544447888999999999988877 45578888999999999998888775 47888999999998886443
Q ss_pred CCCC---CCCCCCEEEEecCCCCCcCCCCC---CCccEEEEeCCCCCCCCCC----CCCCccEEEEeCCCCCCcCCC---
Q 009084 158 SLPE---LPLCLKSLELRDCKMLQSLPALP---LCLESLNLTGCNMLRSLPA----LPLCLESLNLTGCNMLRSLPE--- 224 (544)
Q Consensus 158 ~lp~---~~~~L~~L~l~~~~~l~~l~~~~---~~L~~L~Ls~c~~l~~l~~----~~~~L~~L~Ls~c~~l~~lp~--- 224 (544)
..+. ..++|+.|+++++..+..++... .+|+.|++++|... .+|. .+++|+.|+|++|. +..++.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 268 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML 268 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSC-CCEECTTSC
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCc-CCccChhhc
Confidence 3222 24678888888887777666532 36888888888764 4442 27788888888854 444442
Q ss_pred -CCCCCCEEeEecCCCCCCCCccc---CCCCeeeeccCCCCCCCCC----CCCCccEEeccCCC
Q 009084 225 -LPLCLKYLYLGDCNMLRSLPELS---LCLQSLNAWNCNRLQSLPE----IPSCLQELDASVLE 280 (544)
Q Consensus 225 -~~~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~~----lp~sL~~L~i~~C~ 280 (544)
.+++|+.|+|++|......|..+ .+|+.|++.++ .++.++. -.++|+.|++++++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 34678888888876655445433 55677777764 4444442 12456666666553
No 9
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.5e-23 Score=220.15 Aligned_cols=253 Identities=29% Similarity=0.414 Sum_probs=210.6
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
++|++|++++|.++.+| .++++++|++|++++| .+..+|..+ .+|++|++++|.++.+| .++++++|+.|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCC
Confidence 47999999999999999 4999999999999997 566687643 59999999999999998 699999999999999
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPE 161 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 161 (544)
|. +..+|.. .++|++|++++|.+..+|. ++.+++|++|++++|+++.+|.. +++|+.|++++|. +..+|.
T Consensus 205 N~-l~~l~~~----~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~ 274 (454)
T 1jl5_A 205 NS-LKKLPDL----PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPE 274 (454)
T ss_dssp SC-CSSCCCC----CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCC
T ss_pred Cc-CCcCCCC----cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCc
Confidence 87 5566652 3699999999999999984 89999999999999999998853 4799999999987 556888
Q ss_pred CCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcCCCCCCCCCEEeEecCCCCC
Q 009084 162 LPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELPLCLKYLYLGDCNMLR 241 (544)
Q Consensus 162 ~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~~l~ 241 (544)
.+++|+.|+++++. ++.++..+.+|+.|++++|...+ ++...++|+.|++++ +.+..+|..+++|+.|++++|. ++
T Consensus 275 ~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~-N~l~~lp~~~~~L~~L~L~~N~-l~ 350 (454)
T 1jl5_A 275 LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEELNVSN-NKLIELPALPPRLERLIASFNH-LA 350 (454)
T ss_dssp CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEEECCS-SCCSCCCCCCTTCCEEECCSSC-CS
T ss_pred ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEEECCC-CccccccccCCcCCEEECCCCc-cc
Confidence 88999999998864 56666666899999999997754 444457999999999 4566789888999999999985 45
Q ss_pred CCCcccCCCCeeeeccCCCCCCCCCCCCCccEEe
Q 009084 242 SLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELD 275 (544)
Q Consensus 242 ~lp~~~~~L~~L~l~~c~~L~~l~~lp~sL~~L~ 275 (544)
.+|..+.+|+.|++.++ .+..+|.+|.++..|.
T Consensus 351 ~lp~~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 351 EVPELPQNLKQLHVEYN-PLREFPDIPESVEDLR 383 (454)
T ss_dssp CCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEE
T ss_pred cccchhhhccEEECCCC-CCCcCCCChHHHHhhh
Confidence 67777788999999884 5666666676665554
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=225.54 Aligned_cols=296 Identities=13% Similarity=0.113 Sum_probs=175.7
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
++|++|+|++|.++.++. .++++++|++|+|++|......|..++++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 467788888888877663 577788888888888754444466778888888888888888877766 77888888888
Q ss_pred cCCCCC-ccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCc--cEEEEeCccC--C-CCchhhcCC------------
Q 009084 81 SCKGLV-SLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSL--TGLHLSGNNF--E-SLPASIKQL------------ 142 (544)
Q Consensus 81 ~c~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L--~~L~l~~~~l--~-~lp~~l~~l------------ 142 (544)
+|.... .+|.. ++.+++|++|++++|.+.. ..++.+++| +.|++++|.+ . ..|..+..+
T Consensus 99 ~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKE-FGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhh-hccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 876333 24454 7777788888887777654 234444555 6666666555 1 222222221
Q ss_pred --------------C---------------------------------------------------------CccEEEec
Q 009084 143 --------------S---------------------------------------------------------RLRSLHLE 151 (544)
Q Consensus 143 --------------~---------------------------------------------------------~L~~L~L~ 151 (544)
+ +|+.|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 1 34444444
Q ss_pred CCCCCCCCCCCC----------------------------------CCCCEEEEecCCCCCcC-CCCCCCccEEEEeCCC
Q 009084 152 DCKMLQSLPELP----------------------------------LCLKSLELRDCKMLQSL-PALPLCLESLNLTGCN 196 (544)
Q Consensus 152 ~~~~l~~lp~~~----------------------------------~~L~~L~l~~~~~l~~l-~~~~~~L~~L~Ls~c~ 196 (544)
+|...+.+|... .+|+.|+++++...... +..+++|++|++++|.
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred cccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc
Confidence 443222333221 23444555444322111 1455677777777777
Q ss_pred CCCCCCCC---CCCccEEEEeCCCCCC--cCC---CCCCCCCEEeEecCCCCCCCCcc----cCCCCeeeeccCCCCCCC
Q 009084 197 MLRSLPAL---PLCLESLNLTGCNMLR--SLP---ELPLCLKYLYLGDCNMLRSLPEL----SLCLQSLNAWNCNRLQSL 264 (544)
Q Consensus 197 ~l~~l~~~---~~~L~~L~Ls~c~~l~--~lp---~~~~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~c~~L~~l 264 (544)
..+.+|.. +++|++|+|++|...+ .+| ..+++|+.|++++|.....+|.. +..|+.|++.+|.--..+
T Consensus 336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG
T ss_pred cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch
Confidence 76655543 6777777777754332 333 24567777777777665545532 356777777776544444
Q ss_pred C-CCCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecC
Q 009084 265 P-EIPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNC 309 (544)
Q Consensus 265 ~-~lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C 309 (544)
| .++++|+.|++++| .++.+|...... ..++.+++.+|
T Consensus 416 ~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l------~~L~~L~L~~N 454 (520)
T 2z7x_B 416 FRCLPPRIKVLDLHSN-KIKSIPKQVVKL------EALQELNVASN 454 (520)
T ss_dssp GGSCCTTCCEEECCSS-CCCCCCGGGGGC------TTCCEEECCSS
T ss_pred hhhhcccCCEEECCCC-cccccchhhhcC------CCCCEEECCCC
Confidence 4 24467777777776 455665543321 12356666665
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=6.1e-24 Score=228.89 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=76.8
Q ss_pred CCCCcEEEecCCCCcccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc--CCccCCCCCCccEE
Q 009084 1 MEHLKRIYLGRTAITELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ--LPSSVADSNVLGIL 77 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L 77 (544)
+++|++|++++|.++.++ ..++.+++|++|+|++|......|..++++++|++|++++|.++. +|..++++++|+.|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 356666666666666554 346666677777776654333333346677777777777776663 35566777777777
Q ss_pred EEecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEE
Q 009084 78 DFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLH 126 (544)
Q Consensus 78 ~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~ 126 (544)
++++|..++.+|...+.++++|++|++++|.+.. .|..++.+++|++|+
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 7777665666664446667777777777776655 454444433333333
No 12
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.1e-24 Score=225.60 Aligned_cols=272 Identities=17% Similarity=0.152 Sum_probs=215.2
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|++|+++++.++.+| .++.+++|++|++++| .+..+| ++.+++|++|++++|.++.++ ++++++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 468999999999999988 5899999999999997 466665 889999999999999999986 8899999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCc-cCCCCchhhcCCCCccEEEecCCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGN-NFESLPASIKQLSRLRSLHLEDCKMLQSL 159 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~L~~~~~l~~l 159 (544)
+|. +..++ +..+++|++|++++|.+..++ ++.+++|++|++++| .+..+ .+..+++|+.|++++|.. +.+
T Consensus 115 ~N~-l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l 185 (457)
T 3bz5_A 115 TNK-LTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TEL 185 (457)
T ss_dssp SSC-CSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCC
T ss_pred CCc-CCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-cee
Confidence 986 56665 678999999999999998874 788999999999999 55566 477899999999999864 445
Q ss_pred C-CCCCCCCEEEEecCCCCCcCC-CCCCCccEEEEeCCCCCCCCCCC-CCCccEEEEeCCCCCCcCCCCCCCCC------
Q 009084 160 P-ELPLCLKSLELRDCKMLQSLP-ALPLCLESLNLTGCNMLRSLPAL-PLCLESLNLTGCNMLRSLPELPLCLK------ 230 (544)
Q Consensus 160 p-~~~~~L~~L~l~~~~~l~~l~-~~~~~L~~L~Ls~c~~l~~l~~~-~~~L~~L~Ls~c~~l~~lp~~~~~L~------ 230 (544)
| ...++|+.|+++++.. +.++ ..+++|+.|++++|...+ +|.. +++|+.|++++|...+..+..+++|+
T Consensus 186 ~l~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 186 DVSQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCTTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred ccccCCCCCEEECcCCcC-CeeccccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 4 2347899999987643 3332 346789999999998876 5643 89999999999644333334455554
Q ss_pred ----EEeEecCCCCCCCCc-ccCCCCeeeeccCCCCCCCCCCCCCccEEeccCCCCCCCCCccc
Q 009084 231 ----YLYLGDCNMLRSLPE-LSLCLQSLNAWNCNRLQSLPEIPSCLQELDASVLETLSKPSPDL 289 (544)
Q Consensus 231 ----~L~L~~~~~l~~lp~-~~~~L~~L~l~~c~~L~~l~~lp~sL~~L~i~~C~~L~~~~~~~ 289 (544)
.|++++|..++.+|. .+..|+.|++.+|..++.+|.-..+|+.|++++|++|+.+....
T Consensus 264 n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 555666666666653 33779999999999888888766788888888888887765433
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.2e-24 Score=220.21 Aligned_cols=293 Identities=16% Similarity=0.186 Sum_probs=229.4
Q ss_pred CCCCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~ 78 (544)
+++|++|+++++.++.+|.. +..+++|++|+|++|......+..++.+++|++|++++|.++.++. .++++++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 36899999999999999986 6889999999999985444444579999999999999999998764 578999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
+++|. +..+|...+..+++|++|++++|.+..+ +..++.+++|++|++++|.++.++ +..+++|+.|++++|.. .
T Consensus 124 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l-~ 199 (390)
T 3o6n_A 124 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL-S 199 (390)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC-S
T ss_pred CCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc-c
Confidence 99986 7788887678999999999999999885 556899999999999999999875 67789999999999863 3
Q ss_pred CCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCCC---CCCCCEE
Q 009084 158 SLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPEL---PLCLKYL 232 (544)
Q Consensus 158 ~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~~---~~~L~~L 232 (544)
.+ ..+.+|+.|+++++..-..-.....+|+.|++++|...+. +.. +++|++|+|++|...+..|.. +++|+.|
T Consensus 200 ~~-~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 200 TL-AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp EE-ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cc-CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 33 2356899999988754333334467899999999987653 333 899999999997555444543 5789999
Q ss_pred eEecCCCCCCCCc---ccCCCCeeeeccCCCCCCCCC-C--CCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEE
Q 009084 233 YLGDCNMLRSLPE---LSLCLQSLNAWNCNRLQSLPE-I--PSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGF 306 (544)
Q Consensus 233 ~L~~~~~l~~lp~---~~~~L~~L~l~~c~~L~~l~~-l--p~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~ 306 (544)
++++|.. +.+|. .+++|+.|++.++ .+..+|. + .++|++|++++|. ++.++.... ..++.+++
T Consensus 278 ~L~~n~l-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~--------~~L~~L~l 346 (390)
T 3o6n_A 278 YISNNRL-VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH--------HTLKNLTL 346 (390)
T ss_dssp ECCSSCC-CEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTT--------CCCSEEEC
T ss_pred ECCCCcC-cccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCchhh--------ccCCEEEc
Confidence 9999864 34443 3478999999997 5556653 2 2689999999986 566542221 23477888
Q ss_pred ecCC
Q 009084 307 TNCL 310 (544)
Q Consensus 307 ~~C~ 310 (544)
.+++
T Consensus 347 ~~N~ 350 (390)
T 3o6n_A 347 SHND 350 (390)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7764
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=8.5e-25 Score=244.86 Aligned_cols=302 Identities=17% Similarity=0.117 Sum_probs=181.0
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
++|++|+|++|.++..+..++++++|++|++++|...+.+|..++++++|++|++++|.+....+.. .+++|++|++++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~ 278 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAE 278 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCS
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcC
Confidence 4556666666555532222556666666666665544455555666666666666666555222222 555666666666
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCC-CCchh-hcCCCCccEEEecCCCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFE-SLPAS-IKQLSRLRSLHLEDCKMLQS 158 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~-~lp~~-l~~l~~L~~L~L~~~~~l~~ 158 (544)
|.....+|......+++|++|++++|.+.. +|..++.+++|++|++++|.++ .+|.. +.++++|++|++++|...+.
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 553335555422234677777777777664 6667777777777777777766 66654 67777777777777765545
Q ss_pred CCCCC----CCCCEEEEecCCCCCcCCCC-----CCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCC-
Q 009084 159 LPELP----LCLKSLELRDCKMLQSLPAL-----PLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPEL- 225 (544)
Q Consensus 159 lp~~~----~~L~~L~l~~~~~l~~l~~~-----~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~- 225 (544)
+|..+ .+|+.|+++++.....++.. ..+|+.|++++|...+.+|.. +++|+.|+|++|...+.+|..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 438 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH
Confidence 55432 36777777666543333332 345777777777766666654 667777777776555566643
Q ss_pred --CCCCCEEeEecCCCCCCCCccc---CCCCeeeeccCCCCCCCCC---CCCCccEEeccCCCCCCCCCccccccCCCCC
Q 009084 226 --PLCLKYLYLGDCNMLRSLPELS---LCLQSLNAWNCNRLQSLPE---IPSCLQELDASVLETLSKPSPDLLQWAPGSL 297 (544)
Q Consensus 226 --~~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~~---lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~ 297 (544)
+++|+.|++++|...+.+|..+ .+|+.|++.+|.-...+|. -.++|++|++++|.-...+|..+...
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l----- 513 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL----- 513 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-----
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-----
Confidence 3567777777777666666543 5577777777655545553 22567777777776554555443322
Q ss_pred CCCCeEEEEecCC
Q 009084 298 ESQPIYFGFTNCL 310 (544)
Q Consensus 298 ~~~~~~l~~~~C~ 310 (544)
..++.|++.+|.
T Consensus 514 -~~L~~L~L~~N~ 525 (768)
T 3rgz_A 514 -ENLAILKLSNNS 525 (768)
T ss_dssp -TTCCEEECCSSC
T ss_pred -CCCCEEECCCCc
Confidence 124566766664
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-23 Score=214.98 Aligned_cols=269 Identities=17% Similarity=0.142 Sum_probs=217.2
Q ss_pred CCCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccC-CCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSV-ADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~ 78 (544)
+++|++|+|++|.++.++. .++.+++|++|+|++|......|..++++++|++|++++|.++.+|..+ +++++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 5789999999999998875 6999999999999998655555667899999999999999999999874 8999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQS 158 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 158 (544)
+++|. +..++...+..+++|++|++++|.+..++ ++.+++|+.|++++|.++.++ ..++|+.|++++|.....
T Consensus 148 L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 148 MSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV 220 (390)
T ss_dssp CCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE
T ss_pred CCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccC----CCCcceEEECCCCeeeec
Confidence 99987 55665555889999999999999998874 567899999999999887554 446899999999875443
Q ss_pred CCCCCCCCCEEEEecCCCCCcCC--CCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC---CCCCCC
Q 009084 159 LPELPLCLKSLELRDCKMLQSLP--ALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE---LPLCLK 230 (544)
Q Consensus 159 lp~~~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~---~~~~L~ 230 (544)
-...+++|+.|+++++.. +..+ ..+++|+.|++++|...+..|.. +++|+.|+|++| .++.+|. .+++|+
T Consensus 221 ~~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLK 298 (390)
T ss_dssp ECCCCSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCC
T ss_pred cccccccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCC
Confidence 334568999999988743 3333 23578999999999887765544 889999999995 5666664 357999
Q ss_pred EEeEecCCCCCCCCcc---cCCCCeeeeccCCCCCCCC-CCCCCccEEeccCCC
Q 009084 231 YLYLGDCNMLRSLPEL---SLCLQSLNAWNCNRLQSLP-EIPSCLQELDASVLE 280 (544)
Q Consensus 231 ~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~-~lp~sL~~L~i~~C~ 280 (544)
.|++++|. ++.+|.. ++.|+.|++.+++ +..++ ...++|+.|++++++
T Consensus 299 ~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 299 VLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred EEECCCCc-ceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 99999995 4566653 3789999999965 44444 345689999998874
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.7e-23 Score=212.02 Aligned_cols=290 Identities=17% Similarity=0.166 Sum_probs=222.2
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|++|+++++.++.++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 3689999999999998876 888999999999997 5667776 899999999999999999886 58899999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLP 160 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 160 (544)
+|. +..++. +..+++|+.|++++|.....+..+..+++|++|++++|.+..++. +..+++|+.|++++|.. ..++
T Consensus 119 ~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~ 193 (347)
T 4fmz_A 119 EDN-ISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDIS 193 (347)
T ss_dssp TSC-CCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCG
T ss_pred CCc-ccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-cccc
Confidence 987 666766 788999999999999766655568899999999999999998875 88999999999999863 3444
Q ss_pred C--CCCCCCEEEEecCCCCCcCC--CCCCCccEEEEeCCCCCCCCCC-CCCCccEEEEeCCCCCCcCC--CCCCCCCEEe
Q 009084 161 E--LPLCLKSLELRDCKMLQSLP--ALPLCLESLNLTGCNMLRSLPA-LPLCLESLNLTGCNMLRSLP--ELPLCLKYLY 233 (544)
Q Consensus 161 ~--~~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~Ls~c~~l~~l~~-~~~~L~~L~Ls~c~~l~~lp--~~~~~L~~L~ 233 (544)
. .+++|+.|+++++.. ..++ ..+++|++|++++|......+. .+++|++|++++| .++.++ ..+++|+.|+
T Consensus 194 ~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 194 PLASLTSLHYFTAYVNQI-TDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLN 271 (347)
T ss_dssp GGGGCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEE
T ss_pred cccCCCccceeecccCCC-CCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEE
Confidence 3 347899999987643 3332 3457899999999987654432 2889999999995 555555 3457899999
Q ss_pred EecCCCCCCCCc--ccCCCCeeeeccCCCCCCCCC---CCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEec
Q 009084 234 LGDCNMLRSLPE--LSLCLQSLNAWNCNRLQSLPE---IPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTN 308 (544)
Q Consensus 234 L~~~~~l~~lp~--~~~~L~~L~l~~c~~L~~l~~---lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (544)
+++|.. +.++. .+++|+.|++.+|.--...+. -.++|++|++++|+ ++.++. .... ..++.+++.+
T Consensus 272 l~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l------~~L~~L~l~~ 342 (347)
T 4fmz_A 272 VGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASL------SKMDSADFAN 342 (347)
T ss_dssp CCSSCC-CCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGC------TTCSEESSSC
T ss_pred ccCCcc-CCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhh------hccceeehhh
Confidence 999854 44443 347799999999854333332 23689999999997 565544 1111 1246777777
Q ss_pred CC
Q 009084 309 CL 310 (544)
Q Consensus 309 C~ 310 (544)
|.
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=8e-23 Score=220.93 Aligned_cols=294 Identities=16% Similarity=0.129 Sum_probs=164.7
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
++|++|+|++|.++.++. .++++++|++|+|++|......|..++++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 356666666666666553 466666666666666543333355566666666666666666666655 56666666666
Q ss_pred cCCCCCccC--hhhhcCCCCCCEEEEeccCCCCCChhccCCCCc--cEEEEeCccC--C-CCchhhcCCC----------
Q 009084 81 SCKGLVSLP--RSLLLGLSSLGLLRISYSAVMEIPQEIACLSSL--TGLHLSGNNF--E-SLPASIKQLS---------- 143 (544)
Q Consensus 81 ~c~~l~~lp--~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L--~~L~l~~~~l--~-~lp~~l~~l~---------- 143 (544)
+|. +..++ .. +.++++|++|++++|.+... .++.+++| +.|++++|.+ + ..|..+..+.
T Consensus 130 ~N~-l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 130 FND-FDVLPVCKE-FGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp SSC-CSBCCCCGG-GGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCC-ccccCchHh-hcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 665 33333 33 66666666666666665541 22333333 6666666655 2 1222222211
Q ss_pred -----------------------------------------------------------------------CccEEEecC
Q 009084 144 -----------------------------------------------------------------------RLRSLHLED 152 (544)
Q Consensus 144 -----------------------------------------------------------------------~L~~L~L~~ 152 (544)
+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 344444444
Q ss_pred CCCCCCCCCCC-----C-----------------------------CCCEEEEecCCCCCcC-CCCCCCccEEEEeCCCC
Q 009084 153 CKMLQSLPELP-----L-----------------------------CLKSLELRDCKMLQSL-PALPLCLESLNLTGCNM 197 (544)
Q Consensus 153 ~~~l~~lp~~~-----~-----------------------------~L~~L~l~~~~~l~~l-~~~~~~L~~L~Ls~c~~ 197 (544)
|...+.+|... . +|+.|+++++...... +..+.+|++|++++|..
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 44333344322 1 2344444333221111 14456777788888777
Q ss_pred CCCCCCC---CCCccEEEEeCCCCCCcCC------CCCCCCCEEeEecCCCCCCCCcc----cCCCCeeeeccCCCCCCC
Q 009084 198 LRSLPAL---PLCLESLNLTGCNMLRSLP------ELPLCLKYLYLGDCNMLRSLPEL----SLCLQSLNAWNCNRLQSL 264 (544)
Q Consensus 198 l~~l~~~---~~~L~~L~Ls~c~~l~~lp------~~~~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~c~~L~~l 264 (544)
.+.+|.. +++|+.|++++| .++.++ ..+++|+.|++++|.....+|.. +..|+.|++.++.--..+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred ccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 6655544 677888888874 444433 24467788888887766545532 356777777776544444
Q ss_pred CC-CCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecC
Q 009084 265 PE-IPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNC 309 (544)
Q Consensus 265 ~~-lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C 309 (544)
|. +|++|+.|++++| .++.+|...... ..++.|++.++
T Consensus 445 ~~~l~~~L~~L~L~~N-~l~~ip~~~~~l------~~L~~L~L~~N 483 (562)
T 3a79_B 445 FRCLPPKVKVLDLHNN-RIMSIPKDVTHL------QALQELNVASN 483 (562)
T ss_dssp GSSCCTTCSEEECCSS-CCCCCCTTTTSS------CCCSEEECCSS
T ss_pred hhhhcCcCCEEECCCC-cCcccChhhcCC------CCCCEEECCCC
Confidence 43 4467888888877 566666543321 12356666665
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.7e-24 Score=222.24 Aligned_cols=303 Identities=17% Similarity=0.125 Sum_probs=212.7
Q ss_pred CCCcEEEecCCCCccc-CcccCCCCCccEEeeecCCCCCcc-CcccccCccCcEeEeecCCCccC-CccCCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAITEL-PSSFENLPGLEVLFVEDCSKLDKL-PDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~ 78 (544)
++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..+.++++|++|++++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5799999999999976 566999999999999998766555 45689999999999999999866 77899999999999
Q ss_pred EecCCCCCccCh-hhhcCCCCCCEEEEeccCCCCC-Chh-ccCCCCccEEEEeCccCCCCc-hhhcCC--CCccEEEecC
Q 009084 79 FSSCKGLVSLPR-SLLLGLSSLGLLRISYSAVMEI-PQE-IACLSSLTGLHLSGNNFESLP-ASIKQL--SRLRSLHLED 152 (544)
Q Consensus 79 l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~l-p~~-l~~l~~L~~L~l~~~~l~~lp-~~l~~l--~~L~~L~L~~ 152 (544)
+++|.....++. ..+..+++|++|++++|.+..+ |.. ++.+++|++|++++|.++.++ ..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 999874433332 2377899999999999999885 555 889999999999999888553 344443 4455555555
Q ss_pred CCCCCCCCC-----------CCCCCCEEEEecCC---------------------------CCCcC------CC------
Q 009084 153 CKMLQSLPE-----------LPLCLKSLELRDCK---------------------------MLQSL------PA------ 182 (544)
Q Consensus 153 ~~~l~~lp~-----------~~~~L~~L~l~~~~---------------------------~l~~l------~~------ 182 (544)
|......+. ..++|+.|+++++. ..... +.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 542211110 01334444444442 11110 00
Q ss_pred ---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCC---CCCCCEEeEecCCCCCCCCcc---cCCC
Q 009084 183 ---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPEL---PLCLKYLYLGDCNMLRSLPEL---SLCL 250 (544)
Q Consensus 183 ---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~~l~~lp~~---~~~L 250 (544)
...+|+.|++++|...+..|.. +++|+.|+|++|......|.. +++|+.|++++|...+..|.. +.+|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1257899999999888776654 789999999996555444544 478999999998765444544 3678
Q ss_pred CeeeeccCCCCCCCCC---CCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCC
Q 009084 251 QSLNAWNCNRLQSLPE---IPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCL 310 (544)
Q Consensus 251 ~~L~l~~c~~L~~l~~---lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~ 310 (544)
+.|++.++.--...|. -.++|++|++++| .++.++....... ..++.+++.+++
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----~~L~~L~l~~N~ 406 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL-----TSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-----TTCCEEECCSSC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccC-----CcccEEEccCCC
Confidence 9999998754333342 2368999999997 4666665432211 234788887764
No 19
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1e-22 Score=220.66 Aligned_cols=230 Identities=34% Similarity=0.404 Sum_probs=127.5
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
++++|+++++.++.+|..+. ++|++|+|++| .++.+|. .+++|++|+|++|.++.+|. .+++|+.|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 35667777777776666543 66777777765 4455655 45666777776666666665 5566666666665
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPEL 162 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 162 (544)
. +..+|. .+++|+.|++++|.+..+|.. +++|++|++++|.++.+|. .+++|+.|++++|. ++.+|..
T Consensus 112 ~-l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~~~ 179 (622)
T 3g06_A 112 P-LTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLPML 179 (622)
T ss_dssp C-CCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCC
T ss_pred c-CCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCccc
Confidence 4 444544 345666666666666666553 3566666666666666653 23456666666654 3345555
Q ss_pred CCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcCCCCCCCCCEEeEecCCCCCC
Q 009084 163 PLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELPLCLKYLYLGDCNMLRS 242 (544)
Q Consensus 163 ~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~~l~~ 242 (544)
+++|+.|+++++ .++.+|..+.+|+.|++++|.+. .+|..+++|+.|+|++| .++.+|..+++|+.|++++|. ++.
T Consensus 180 ~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~-L~~ 255 (622)
T 3g06_A 180 PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTS 255 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCS-SCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSC
T ss_pred CCCCcEEECCCC-CCCCCCCccchhhEEECcCCccc-ccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCC-CCc
Confidence 555555555443 24445544555555555555432 34444455555555552 444455444555555555542 223
Q ss_pred CCcccCCCCeeeecc
Q 009084 243 LPELSLCLQSLNAWN 257 (544)
Q Consensus 243 lp~~~~~L~~L~l~~ 257 (544)
+|..+.+|+.|++.+
T Consensus 256 lp~~~~~L~~L~Ls~ 270 (622)
T 3g06_A 256 LPMLPSGLLSLSVYR 270 (622)
T ss_dssp CCCCCTTCCEEECCS
T ss_pred CCcccccCcEEeCCC
Confidence 333333344444443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.6e-23 Score=221.46 Aligned_cols=296 Identities=16% Similarity=0.157 Sum_probs=214.5
Q ss_pred CCCCcEEEecCCCCccc-CcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc--CCccCCCCCCccEE
Q 009084 1 MEHLKRIYLGRTAITEL-PSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ--LPSSVADSNVLGIL 77 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L 77 (544)
+++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|.. .+++|++|++++|.++. +|..++++++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 57899999999999977 667999999999999997 56688875 89999999999999985 57889999999999
Q ss_pred EEecCCCCCccChhhhcCCCCC--CEEEEeccCC--CC-CChhccCC---------------------------------
Q 009084 78 DFSSCKGLVSLPRSLLLGLSSL--GLLRISYSAV--ME-IPQEIACL--------------------------------- 119 (544)
Q Consensus 78 ~l~~c~~l~~lp~~~~~~l~~L--~~L~l~~~~~--~~-lp~~l~~l--------------------------------- 119 (544)
++++|.. .. ..+..+++| +.|++++|.+ .. .|..++.+
T Consensus 121 ~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 121 GLSTTHL-EK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp EEEESSC-CG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred EecCccc-ch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 9999873 32 124556666 7777777766 22 33333331
Q ss_pred --------------------------------------------------CCccEEEEeCccCC-CCchhh-----cCCC
Q 009084 120 --------------------------------------------------SSLTGLHLSGNNFE-SLPASI-----KQLS 143 (544)
Q Consensus 120 --------------------------------------------------~~L~~L~l~~~~l~-~lp~~l-----~~l~ 143 (544)
++|++|++++|.++ .+|..+ ..++
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 15666666666666 666655 5555
Q ss_pred CccEE--------------------------EecCCCCCCCC-CCCCCCCCEEEEecCCCCCcCCC---CCCCccEEEEe
Q 009084 144 RLRSL--------------------------HLEDCKMLQSL-PELPLCLKSLELRDCKMLQSLPA---LPLCLESLNLT 193 (544)
Q Consensus 144 ~L~~L--------------------------~L~~~~~l~~l-p~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls 193 (544)
+|+.+ ++++|...... +..+++|+.|+++++.....+|. .+++|+.|+++
T Consensus 277 ~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred eeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 54444 44444422211 15678999999999876555554 35689999999
Q ss_pred CCCCCC--CCCC---CCCCccEEEEeCCCCCCcCCC----CCCCCCEEeEecCCCCCCCCccc-CCCCeeeeccCCCCCC
Q 009084 194 GCNMLR--SLPA---LPLCLESLNLTGCNMLRSLPE----LPLCLKYLYLGDCNMLRSLPELS-LCLQSLNAWNCNRLQS 263 (544)
Q Consensus 194 ~c~~l~--~l~~---~~~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~~l~~lp~~~-~~L~~L~l~~c~~L~~ 263 (544)
+|...+ .+|. .+++|++|+|++|.....+|. .+++|+.|++++|...+.+|..+ ..|+.|++.+| .++.
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ 435 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKS 435 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccc
Confidence 999875 4432 389999999999665554774 34789999999998877777766 68999999996 5667
Q ss_pred CCC---CCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCC
Q 009084 264 LPE---IPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCL 310 (544)
Q Consensus 264 l~~---lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~ 310 (544)
+|. -.++|++|++++| .++.+|...... + ..++.+++.+++
T Consensus 436 ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~----l-~~L~~L~l~~N~ 479 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASN-QLKSVPDGIFDR----L-TSLQKIWLHTNP 479 (520)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT----C-TTCCEEECCSSC
T ss_pred cchhhhcCCCCCEEECCCC-cCCccCHHHhcc----C-CcccEEECcCCC
Confidence 774 2368999999998 577887652211 1 234788888775
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.2e-23 Score=226.80 Aligned_cols=293 Identities=16% Similarity=0.195 Sum_probs=230.0
Q ss_pred CCCCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~ 78 (544)
+.+++.|+++++.++.+|.. ++.+++|++|+|++|......|..++.+++|++|+|++|.+..+|.. ++++++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 36789999999999999876 78899999999999865444555799999999999999999988764 68999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
+++|. +..+|...+..+++|++|++++|.+..+ |..++.+++|+.|++++|.++.++ +..+++|+.|++++|.. .
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l-~ 205 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL-S 205 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC-S
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc-c
Confidence 99986 7788887678999999999999999884 556999999999999999999875 56789999999999863 3
Q ss_pred CCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCCC---CCCCCEE
Q 009084 158 SLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPEL---PLCLKYL 232 (544)
Q Consensus 158 ~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~~---~~~L~~L 232 (544)
.+ ..+.+|+.|+++++..-...+..+.+|+.|+|++|...+. +.. +++|+.|+|++|...+..|.. +++|+.|
T Consensus 206 ~l-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 206 TL-AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp EE-ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cc-cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 33 2456899999988754433344567899999999987653 332 899999999997665555643 4789999
Q ss_pred eEecCCCCCCCCcc---cCCCCeeeeccCCCCCCCCC-C--CCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEE
Q 009084 233 YLGDCNMLRSLPEL---SLCLQSLNAWNCNRLQSLPE-I--PSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGF 306 (544)
Q Consensus 233 ~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~~-l--p~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~ 306 (544)
+|++|... .+|.. +++|+.|++.+|. +..+|. + .++|+.|++++|. ++.++.... ..+..|++
T Consensus 284 ~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~--------~~L~~L~l 352 (597)
T 3oja_B 284 YISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH--------HTLKNLTL 352 (597)
T ss_dssp ECTTSCCC-EEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTT--------CCCSEEEC
T ss_pred ECCCCCCC-CCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcChhhc--------CCCCEEEe
Confidence 99998654 34433 4789999999864 445553 1 2689999999986 455542221 13477888
Q ss_pred ecCC
Q 009084 307 TNCL 310 (544)
Q Consensus 307 ~~C~ 310 (544)
.+++
T Consensus 353 ~~N~ 356 (597)
T 3oja_B 353 SHND 356 (597)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 7775
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=6.7e-23 Score=207.63 Aligned_cols=268 Identities=20% Similarity=0.245 Sum_probs=206.0
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|++|++++|.++.++. +..+++|++|++++| .+..+|. +..+++|++|++++|.+..++. +..+++|+.|+++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH-HcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 5688999999999988877 888999999999987 5566664 8889999999999999988877 8889999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLP 160 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 160 (544)
+|.....++. +..+++|++|++++|.+..++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|......+
T Consensus 141 ~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 216 (347)
T 4fmz_A 141 ANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP 216 (347)
T ss_dssp TCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCcccccc--hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch
Confidence 9877776666 7888999999999998887665 7788999999999998888875 7888999999999886433221
Q ss_pred -CCCCCCCEEEEecCCCCCcCC--CCCCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCC--CCCCCCCEEe
Q 009084 161 -ELPLCLKSLELRDCKMLQSLP--ALPLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLP--ELPLCLKYLY 233 (544)
Q Consensus 161 -~~~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp--~~~~~L~~L~ 233 (544)
..+++|+.|++++|.. +.++ ..+++|+.|++++|.... ++.. +++|++|++++| .+..++ ..+++|+.|+
T Consensus 217 ~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLF 293 (347)
T ss_dssp GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEE
T ss_pred hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEE
Confidence 2347889999987743 3333 346788999999987654 3433 788999999985 555555 3457899999
Q ss_pred EecCCCCCCCCcc---cCCCCeeeeccCCCCCCCCC--CCCCccEEeccCCC
Q 009084 234 LGDCNMLRSLPEL---SLCLQSLNAWNCNRLQSLPE--IPSCLQELDASVLE 280 (544)
Q Consensus 234 L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~~--lp~sL~~L~i~~C~ 280 (544)
+++|......+.. +++|+.|++.+|+ +..++. -.++|++|++++|+
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 9998765555443 4678899999876 444432 23678888888875
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.9e-23 Score=224.11 Aligned_cols=269 Identities=17% Similarity=0.143 Sum_probs=218.5
Q ss_pred CCCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccC-CCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSV-ADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~ 78 (544)
+++|++|+|++|.++.++. .++.+++|++|+|++|......|..++++++|++|+|++|.++.+|..+ +++++|+.|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 5789999999999998775 6999999999999998655555666899999999999999999998874 8999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQS 158 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 158 (544)
+++|. +..+++..+..+++|+.|++++|.+..++ ++.+++|+.|++++|.++.++ ..++|+.|++++|.....
T Consensus 154 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 154 MSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV 226 (597)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE
T ss_pred eeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccc
Confidence 99987 55565544899999999999999998875 567899999999999887553 456899999999975444
Q ss_pred CCCCCCCCCEEEEecCCCCCcCC--CCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCC---CCCCC
Q 009084 159 LPELPLCLKSLELRDCKMLQSLP--ALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPEL---PLCLK 230 (544)
Q Consensus 159 lp~~~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~---~~~L~ 230 (544)
.+..+++|+.|+++++... ..+ ..+++|+.|+|++|.+.+..|.. +++|+.|+|++| .+..+|.. +++|+
T Consensus 227 ~~~~~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~ 304 (597)
T 3oja_B 227 RGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLK 304 (597)
T ss_dssp ECSCCSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCC
T ss_pred ccccCCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCc
Confidence 4455689999999887533 322 23678999999999988776654 889999999994 56666643 57999
Q ss_pred EEeEecCCCCCCCCcc---cCCCCeeeeccCCCCCCCC-CCCCCccEEeccCCC
Q 009084 231 YLYLGDCNMLRSLPEL---SLCLQSLNAWNCNRLQSLP-EIPSCLQELDASVLE 280 (544)
Q Consensus 231 ~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~-~lp~sL~~L~i~~C~ 280 (544)
.|+|++|... .+|.. +++|+.|++.+|.- ..++ ...++|+.|++++++
T Consensus 305 ~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSSC
T ss_pred EEECCCCCCC-ccCcccccCCCCCEEECCCCCC-CCcChhhcCCCCEEEeeCCC
Confidence 9999999655 66654 47899999999754 4443 445789999999875
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.3e-23 Score=217.74 Aligned_cols=246 Identities=17% Similarity=0.138 Sum_probs=197.7
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|++++|.++.+| ++.+++|+.|+++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence 578999999999999986 8899999999999974 55565 899999999999999999986 8999999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCC-CCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVM-EIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSL 159 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l 159 (544)
+|. +..++ +..+++|++|++++|... .+ .++.+++|+.|++++|+++.+| +..+++|+.|++++|.....-
T Consensus 136 ~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~ 207 (457)
T 3bz5_A 136 RNT-LTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD 207 (457)
T ss_dssp TSC-CSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC
T ss_pred CCc-cceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec
Confidence 987 55564 678999999999999544 35 4778999999999999999987 788999999999998743321
Q ss_pred CCCCCCCCEEEEecCCCCCcCC-CCCCCccEEEEeCCCCCCCCCCCCCCccE----------EEEeCCCCCCcCCC-CCC
Q 009084 160 PELPLCLKSLELRDCKMLQSLP-ALPLCLESLNLTGCNMLRSLPALPLCLES----------LNLTGCNMLRSLPE-LPL 227 (544)
Q Consensus 160 p~~~~~L~~L~l~~~~~l~~l~-~~~~~L~~L~Ls~c~~l~~l~~~~~~L~~----------L~Ls~c~~l~~lp~-~~~ 227 (544)
-...++|+.|+++++. ++.+| ..+++|+.|++++|...+..+..+++|+. |++++|..++.+|. .++
T Consensus 208 l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~ 286 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence 1235789999998874 44455 34678999999999887654444665555 45555555555653 458
Q ss_pred CCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCC
Q 009084 228 CLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQ 262 (544)
Q Consensus 228 ~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~ 262 (544)
+|+.|++++|..++.+|.....|+.|++.+|+.|+
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred cCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 99999999999999998877888888888775443
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.6e-22 Score=212.48 Aligned_cols=256 Identities=23% Similarity=0.294 Sum_probs=208.9
Q ss_pred CCCCcEEEecCCCCccc-CcccCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCCCccC-CccCCCCCCccEE
Q 009084 1 MEHLKRIYLGRTAITEL-PSSFENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSAISQL-PSSVADSNVLGIL 77 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L 77 (544)
+++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|. .+.++++|++|+|++|.+..+ +..+..+++|+.|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 57899999999999977 667999999999999997 4566665 478999999999999999966 5678999999999
Q ss_pred EEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCC
Q 009084 78 DFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 78 ~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~ 155 (544)
++++|. +..++...+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..++. .+..+++|+.|++++|..
T Consensus 134 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 999987 555655448899999999999999999765 58899999999999999996654 688999999999999988
Q ss_pred CCCCCCCC---CCCCEEEEecCCCCCcCC----CCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCC
Q 009084 156 LQSLPELP---LCLKSLELRDCKMLQSLP----ALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPEL 225 (544)
Q Consensus 156 l~~lp~~~---~~L~~L~l~~~~~l~~l~----~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~ 225 (544)
+..++... .+|+.|+++++. ++.+| ..+.+|+.|+|++|...+..+.. +++|+.|+|++|......|..
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred ccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 87776532 489999998874 55666 35678999999999876554433 789999999996555444544
Q ss_pred ---CCCCCEEeEecCCCCCCCCcc---cCCCCeeeeccCC
Q 009084 226 ---PLCLKYLYLGDCNMLRSLPEL---SLCLQSLNAWNCN 259 (544)
Q Consensus 226 ---~~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~ 259 (544)
+++|+.|+|++|......+.. +.+|+.|++.+++
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 478999999999654433333 3578899988754
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.6e-22 Score=220.48 Aligned_cols=275 Identities=19% Similarity=0.150 Sum_probs=167.1
Q ss_pred CCcEEEecCCCCcccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEe
Q 009084 3 HLKRIYLGRTAITELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFS 80 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~ 80 (544)
++++|+|++|.++.++ ..++++++|++|+|++|......|..|+++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 5777888888887663 4577788888888887755555566777788888888877777754 5567777777777777
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCC--ChhccCCCCccEEEEeCccCCCC-chhhcCCCCcc--EEEecCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI--PQEIACLSSLTGLHLSGNNFESL-PASIKQLSRLR--SLHLEDCKM 155 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l--p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~--~L~L~~~~~ 155 (544)
+|. +..++...+..+++|++|++++|.+..+ |..+ .+++|++|++++|.++.+ |..+..+++|+ .|++++|..
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccC-cccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 766 4444333366777777777777777663 3333 377777777777776654 33455555555 555554432
Q ss_pred CC--------------------------------------------------------------------------CCCC
Q 009084 156 LQ--------------------------------------------------------------------------SLPE 161 (544)
Q Consensus 156 l~--------------------------------------------------------------------------~lp~ 161 (544)
.. .++.
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 11 1111
Q ss_pred ----CCCCCCEEEEecCCCCCcCCCC---CCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC----CCC
Q 009084 162 ----LPLCLKSLELRDCKMLQSLPAL---PLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE----LPL 227 (544)
Q Consensus 162 ----~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~----~~~ 227 (544)
..++|+.|+++++ .++.+|.. +++|++|++++|...+..|.. +++|+.|++++|.....+|. .++
T Consensus 272 ~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 1256777777665 34456544 356777888887766544432 67777777777655555543 235
Q ss_pred CCCEEeEecCCCCCCC--Cc---ccCCCCeeeeccCCCCCCCCC---CCCCccEEeccCCC
Q 009084 228 CLKYLYLGDCNMLRSL--PE---LSLCLQSLNAWNCNRLQSLPE---IPSCLQELDASVLE 280 (544)
Q Consensus 228 ~L~~L~L~~~~~l~~l--p~---~~~~L~~L~l~~c~~L~~l~~---lp~sL~~L~i~~C~ 280 (544)
+|+.|++++|...... +. .++.|+.|++.++.-....+. -.++|++|++++|.
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 6777777766543322 22 224566666665543222221 12455555555554
No 27
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.5e-22 Score=213.48 Aligned_cols=256 Identities=33% Similarity=0.388 Sum_probs=220.3
Q ss_pred CCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEE
Q 009084 25 PGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRI 104 (544)
Q Consensus 25 ~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 104 (544)
.+++.|++++| .++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|. ++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEEC
Confidence 46999999986 6779998765 899999999999999997 67999999999987 777876 6799999999
Q ss_pred eccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCCCCCCCEEEEecCCCCCcCCCCC
Q 009084 105 SYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLELRDCKMLQSLPALP 184 (544)
Q Consensus 105 ~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~~ 184 (544)
++|.+..+|. .+++|+.|++++|+++.+|.. +++|++|++++|. +..+|..+.+|+.|+++++ .++.+|..+
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N-~l~~l~~~~ 180 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNN-QLTSLPMLP 180 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCC
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCC-CCCCCcccC
Confidence 9999999887 578999999999999999964 4899999999995 6678888899999999775 566788888
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcCCCCCCCCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCCCC
Q 009084 185 LCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSL 264 (544)
Q Consensus 185 ~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l 264 (544)
.+|+.|++++|.+. .+|..+++|+.|++++ +.++.+|..+++|+.|++++| .++.+|..+.+|+.|+++++ .+..+
T Consensus 181 ~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~-N~l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~l 256 (622)
T 3g06_A 181 SGLQELSVSDNQLA-SLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSL 256 (622)
T ss_dssp TTCCEEECCSSCCS-CCCCCCTTCCEEECCS-SCCSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCC
T ss_pred CCCcEEECCCCCCC-CCCCccchhhEEECcC-CcccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcC
Confidence 99999999999865 5777789999999999 578889998999999999998 45668888899999999996 78889
Q ss_pred CCCCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCC
Q 009084 265 PEIPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCL 310 (544)
Q Consensus 265 ~~lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~ 310 (544)
|..+++|+.|++++| .|+.+|..+... ..++.|++.+++
T Consensus 257 p~~~~~L~~L~Ls~N-~L~~lp~~l~~l------~~L~~L~L~~N~ 295 (622)
T 3g06_A 257 PMLPSGLLSLSVYRN-QLTRLPESLIHL------SSETTVNLEGNP 295 (622)
T ss_dssp CCCCTTCCEEECCSS-CCCSCCGGGGGS------CTTCEEECCSCC
T ss_pred CcccccCcEEeCCCC-CCCcCCHHHhhc------cccCEEEecCCC
Confidence 998899999999998 677887654332 235788988876
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.1e-22 Score=219.63 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=106.5
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l 79 (544)
++|++|+|++|.++.++. .++++++|++|+|++|......|..|+++++|++|++++|.++.+ |..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 468888898888887765 588888899999988754444566788888899999988888877 777888888999988
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCC--CChhccCCCCccEEEEeCccCCCCc
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVME--IPQEIACLSSLTGLHLSGNNFESLP 136 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~lp 136 (544)
++|. +..++...++++++|++|++++|.+.. +|..++.+++|++|++++|.++.++
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred cCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 8877 555553337888888888888888874 7888888888888888888777543
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=7.7e-23 Score=220.27 Aligned_cols=149 Identities=23% Similarity=0.270 Sum_probs=120.8
Q ss_pred CCCcEEEecCCCCcccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 79 (544)
++|++|+|++|.++.++ ..++++++|++|++++|......|..++++++|++|++++|.+..++.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999999774 5699999999999999865555567899999999999999999988875 899999999999
Q ss_pred ecCCCCC-ccChhhhcCCCCCCEEEEeccC-CCCCC-hhccCCCCccEEEEeCccCCC-CchhhcCCCCccEEEec
Q 009084 80 SSCKGLV-SLPRSLLLGLSSLGLLRISYSA-VMEIP-QEIACLSSLTGLHLSGNNFES-LPASIKQLSRLRSLHLE 151 (544)
Q Consensus 80 ~~c~~l~-~lp~~~~~~l~~L~~L~l~~~~-~~~lp-~~l~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~L~ 151 (544)
++|.... ..|.. +.++++|++|++++|. +..+| ..++.+++|++|++++|.++. .|..+..+++|+.|+++
T Consensus 106 s~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 106 MGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9987432 33444 8899999999999998 55565 579999999999999999884 55555544444444433
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.7e-22 Score=220.30 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=90.5
Q ss_pred CCCCcEEEecCCCCcccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~ 78 (544)
+++|++|+|++|.++.++ ..++++++|++|+|++|......|..++++++|++|++++|.+..++ ..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 468999999999998774 45889999999999997655555888999999999999999998776 6788899999999
Q ss_pred EecCCCCC-ccChhhhcCCCCCCEEEEeccCCCC
Q 009084 79 FSSCKGLV-SLPRSLLLGLSSLGLLRISYSAVME 111 (544)
Q Consensus 79 l~~c~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~ 111 (544)
+++|.... .+|.. +.++++|++|++++|.+..
T Consensus 135 L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 135 VAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred CCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 99987443 46766 8888999999988887765
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=4.6e-24 Score=213.24 Aligned_cols=241 Identities=20% Similarity=0.254 Sum_probs=157.1
Q ss_pred CCCcEEEecCCCCc---ccCcccCCCCCccEEeeec-CCCCCccCcccccCccCcEeEeecCCCc-cCCccCCCCCCccE
Q 009084 2 EHLKRIYLGRTAIT---ELPSSFENLPGLEVLFVED-CSKLDKLPDNIGNLKSLGHISAAGSAIS-QLPSSVADSNVLGI 76 (544)
Q Consensus 2 ~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~~-c~~l~~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~ 76 (544)
.++++|+|+++.++ .+|..++++++|++|+|++ |...+.+|..++++++|++|++++|.+. .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35777888887776 4777777788888888875 5444567777778888888888777777 67777777888888
Q ss_pred EEEecCCCCCccChhhhcCCCCCCEEEEeccCCC-CCChhccCCC-CccEEEEeCccCC-CCchhhcCCCCccEEEecCC
Q 009084 77 LDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVM-EIPQEIACLS-SLTGLHLSGNNFE-SLPASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 77 L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~-~lp~~l~~l~-~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~L~~~ 153 (544)
|++++|.....+|.. +..+++|++|++++|.+. .+|..++.++ +|+.|++++|.++ .+|..+..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888777644456665 677778888888888777 4777777776 7888888887777 6677777776 788888777
Q ss_pred CCCCCCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCCCC---CC
Q 009084 154 KMLQSLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPELP---LC 228 (544)
Q Consensus 154 ~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~~~---~~ 228 (544)
......|..+ ..+++|+.|++++|...+.++.. +++|++|+|++|...+.+|..+ ++
T Consensus 208 ~l~~~~~~~~------------------~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 208 MLEGDASVLF------------------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp EEEECCGGGC------------------CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred cccCcCCHHH------------------hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 6433333221 12334555555555554433332 5566666666654444555433 55
Q ss_pred CCEEeEecCCCCCCCCcc--cCCCCeeeeccCCCCC
Q 009084 229 LKYLYLGDCNMLRSLPEL--SLCLQSLNAWNCNRLQ 262 (544)
Q Consensus 229 L~~L~L~~~~~l~~lp~~--~~~L~~L~l~~c~~L~ 262 (544)
|+.|++++|...+.+|.. ++.|+.|++.+++.+.
T Consensus 270 L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 666666666655555543 2345555555544433
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.7e-22 Score=210.62 Aligned_cols=289 Identities=19% Similarity=0.225 Sum_probs=166.1
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
+|+.|++.++.++.+|. +..+++|++|++++| .+..+|. ++++++|++|++++|.+..++. ++++++|++|++++|
T Consensus 47 ~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp TCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred cccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 44555555555554443 444555555555554 2333333 4455555555555555544444 444555555555444
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCC--------------------hhccCCCCccEEEEeCccCCCCchhhcCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIP--------------------QEIACLSSLTGLHLSGNNFESLPASIKQL 142 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp--------------------~~l~~l~~L~~L~l~~~~l~~lp~~l~~l 142 (544)
. +..++. +..+++|++|++++|.+..++ ..++.+++|+.|++++|.++.++ .+..+
T Consensus 123 ~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l 198 (466)
T 1o6v_A 123 Q-ITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKL 198 (466)
T ss_dssp C-CCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGC
T ss_pred C-CCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccC
Confidence 3 333333 444444444444444433322 12677888999999999888876 57888
Q ss_pred CCccEEEecCCCCCCCCC-CCCCCCCEEEEecCCCCCcCCC--CCCCccEEEEeCCCCCCCCCCC-CCCccEEEEeCCCC
Q 009084 143 SRLRSLHLEDCKMLQSLP-ELPLCLKSLELRDCKMLQSLPA--LPLCLESLNLTGCNMLRSLPAL-PLCLESLNLTGCNM 218 (544)
Q Consensus 143 ~~L~~L~L~~~~~l~~lp-~~~~~L~~L~l~~~~~l~~l~~--~~~~L~~L~Ls~c~~l~~l~~~-~~~L~~L~Ls~c~~ 218 (544)
++|+.|++++|......+ ..+++|+.|+++++. ++.++. .+++|+.|++++|...+..+.. +++|+.|++++|.
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~- 276 (466)
T 1o6v_A 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ- 276 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-
T ss_pred CCCCEEEecCCcccccccccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-
Confidence 999999999887443322 235788888887764 333332 3567888888888776544422 7788888888853
Q ss_pred CCcCC--CCCCCCCEEeEecCCCCCCCC-cccCCCCeeeeccCCCCCCCCC--CCCCccEEeccCCCCCCCCCccccccC
Q 009084 219 LRSLP--ELPLCLKYLYLGDCNMLRSLP-ELSLCLQSLNAWNCNRLQSLPE--IPSCLQELDASVLETLSKPSPDLLQWA 293 (544)
Q Consensus 219 l~~lp--~~~~~L~~L~L~~~~~l~~lp-~~~~~L~~L~l~~c~~L~~l~~--lp~sL~~L~i~~C~~L~~~~~~~~~~~ 293 (544)
+..++ ..+++|+.|++++|......+ ..+++|+.|++.+|. +..++. ..++|+.|++++| .++.++. ....
T Consensus 277 l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l- 352 (466)
T 1o6v_A 277 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN-KVSDVSS-LANL- 352 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTC-
T ss_pred cCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCC-ccCCchh-hccC-
Confidence 44443 344678888888876443222 234667888887764 333322 2357788888777 4555421 1111
Q ss_pred CCCCCCCCeEEEEecCC
Q 009084 294 PGSLESQPIYFGFTNCL 310 (544)
Q Consensus 294 ~~~~~~~~~~l~~~~C~ 310 (544)
..++.+++.+|.
T Consensus 353 -----~~L~~L~l~~n~ 364 (466)
T 1o6v_A 353 -----TNINWLSAGHNQ 364 (466)
T ss_dssp -----TTCCEEECCSSC
T ss_pred -----CCCCEEeCCCCc
Confidence 124667776664
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=6.1e-22 Score=224.00 Aligned_cols=156 Identities=20% Similarity=0.205 Sum_probs=128.7
Q ss_pred CCCcEEEecCCCCccc-CcccCCCCCccEEeeecCCCCCcc-CcccccCccCcEeEeecCCCccC-CccCCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAITEL-PSSFENLPGLEVLFVEDCSKLDKL-PDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~ 78 (544)
++|++|+|++|.++.+ |..++++++|++|+|++|.....+ |..++++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 6799999999999976 556999999999999999777777 77799999999999999999966 78899999999999
Q ss_pred EecCCCCCccCh-hhhcCCCCCCEEEEeccCCCCC--ChhccCCCCccEEEEeCccCCC-CchhhcCC--CCccEEEecC
Q 009084 79 FSSCKGLVSLPR-SLLLGLSSLGLLRISYSAVMEI--PQEIACLSSLTGLHLSGNNFES-LPASIKQL--SRLRSLHLED 152 (544)
Q Consensus 79 l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~l--p~~l~~l~~L~~L~l~~~~l~~-lp~~l~~l--~~L~~L~L~~ 152 (544)
+++|.....++. ..+..+++|++|++++|.+..+ +..++.+++|++|++++|.++. .+..+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 999985544443 2478899999999999998874 4579999999999999998874 34455554 6677777766
Q ss_pred CCCCC
Q 009084 153 CKMLQ 157 (544)
Q Consensus 153 ~~~l~ 157 (544)
|....
T Consensus 184 n~l~~ 188 (844)
T 3j0a_A 184 NSLYS 188 (844)
T ss_dssp SBSCC
T ss_pred Ccccc
Confidence 65443
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=5.9e-22 Score=214.09 Aligned_cols=296 Identities=18% Similarity=0.193 Sum_probs=218.0
Q ss_pred CCCCcEEEecCCCCccc-CcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC--ccCCCCCCccEE
Q 009084 1 MEHLKRIYLGRTAITEL-PSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP--SSVADSNVLGIL 77 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L 77 (544)
+++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|.. .+++|++|++++|.++.++ ..++++++|+.|
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 57899999999999987 556999999999999997 56788886 8999999999999999765 789999999999
Q ss_pred EEecCCCCCccChhhhcCCCCC--CEEEEeccCC--CC-CChhccCCC--------------------------------
Q 009084 78 DFSSCKGLVSLPRSLLLGLSSL--GLLRISYSAV--ME-IPQEIACLS-------------------------------- 120 (544)
Q Consensus 78 ~l~~c~~l~~lp~~~~~~l~~L--~~L~l~~~~~--~~-lp~~l~~l~-------------------------------- 120 (544)
++++|.. .... +..+++| +.|++++|.+ .. .|..+..+.
T Consensus 152 ~L~~n~l-~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 152 GLSAAKF-RQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEECSBC-CTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred ecCCCcc-ccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 9999873 3322 4455555 9999998877 33 333333322
Q ss_pred -------------------------------------------------CccEEEEeCccCC-CCchhh-----cCC---
Q 009084 121 -------------------------------------------------SLTGLHLSGNNFE-SLPASI-----KQL--- 142 (544)
Q Consensus 121 -------------------------------------------------~L~~L~l~~~~l~-~lp~~l-----~~l--- 142 (544)
+|++|++++|.++ .+|..+ .++
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 6777788888776 677654 333
Q ss_pred -----------------------CCccEEEecCCCCCCCC-CCCCCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCC
Q 009084 143 -----------------------SRLRSLHLEDCKMLQSL-PELPLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGC 195 (544)
Q Consensus 143 -----------------------~~L~~L~L~~~~~l~~l-p~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c 195 (544)
.+|+.|++++|...... +..+++|+.|+++++.....+|. .+++|+.|++++|
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 34666677766543221 15668999999998866555554 3568999999999
Q ss_pred CCCC--CCC---CCCCCccEEEEeCCCCCCcCCCC----CCCCCEEeEecCCCCCCCCccc-CCCCeeeeccCCCCCCCC
Q 009084 196 NMLR--SLP---ALPLCLESLNLTGCNMLRSLPEL----PLCLKYLYLGDCNMLRSLPELS-LCLQSLNAWNCNRLQSLP 265 (544)
Q Consensus 196 ~~l~--~l~---~~~~~L~~L~Ls~c~~l~~lp~~----~~~L~~L~L~~~~~l~~lp~~~-~~L~~L~l~~c~~L~~l~ 265 (544)
...+ .+| ..+++|+.|+|++|.....+|.. +++|+.|++++|...+.+|..+ ..|+.|++.++ .++.+|
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip 466 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIP 466 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCC
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccC
Confidence 8764 222 23899999999997655547753 4789999999998877777766 58999999996 677777
Q ss_pred C---CCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCC
Q 009084 266 E---IPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCL 310 (544)
Q Consensus 266 ~---lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~ 310 (544)
. -.++|++|+++++. ++.+|...... + ..++.+++.+++
T Consensus 467 ~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~----l-~~L~~L~l~~N~ 508 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQ-LKSVPDGVFDR----L-TSLQYIWLHDNP 508 (562)
T ss_dssp TTTTSSCCCSEEECCSSC-CCCCCTTSTTT----C-TTCCCEECCSCC
T ss_pred hhhcCCCCCCEEECCCCC-CCCCCHHHHhc----C-CCCCEEEecCCC
Confidence 4 23689999999974 67777652211 1 234678887765
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.5e-22 Score=203.63 Aligned_cols=210 Identities=30% Similarity=0.415 Sum_probs=174.3
Q ss_pred CCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEE
Q 009084 24 LPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLR 103 (544)
Q Consensus 24 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~ 103 (544)
.++++.|+|++| .+..+|..++++++|++|+|++|.++.+|..++.+++|++|++++|. +..+|.. +..+++|++|+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEE
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEE
Confidence 578999999996 56799999999999999999999999999999999999999999987 5588887 89999999999
Q ss_pred EeccCCCC-CChhccC---------CCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCCCCCCCEEEEec
Q 009084 104 ISYSAVME-IPQEIAC---------LSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLELRD 173 (544)
Q Consensus 104 l~~~~~~~-lp~~l~~---------l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~ 173 (544)
+++|.+.. +|..++. +++|++|++++|.++.+|..+..+++|+.|++++|... .+|..+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l---------- 225 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAI---------- 225 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGG----------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhh----------
Confidence 99987655 8877654 99999999999999999999999999999999998643 232211
Q ss_pred CCCCCcCCCCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCCC---CCCCEEeEecCCCCCCCCccc
Q 009084 174 CKMLQSLPALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPELP---LCLKYLYLGDCNMLRSLPELS 247 (544)
Q Consensus 174 ~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~---~~L~~L~L~~~~~l~~lp~~~ 247 (544)
..+++|+.|++++|+..+.+|.. +++|++|+|++|+..+.+|..+ ++|+.|+|++|+.++.+|..+
T Consensus 226 --------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 226 --------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp --------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred --------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 12346777778887777777765 7889999999999999888654 678888999888888888776
Q ss_pred CCCCeeee
Q 009084 248 LCLQSLNA 255 (544)
Q Consensus 248 ~~L~~L~l 255 (544)
..|..|..
T Consensus 298 ~~L~~L~~ 305 (328)
T 4fcg_A 298 AQLPANCI 305 (328)
T ss_dssp GGSCTTCE
T ss_pred hhccCceE
Confidence 55444433
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2e-22 Score=219.73 Aligned_cols=277 Identities=21% Similarity=0.181 Sum_probs=209.3
Q ss_pred CCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEe
Q 009084 3 HLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFS 80 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~ 80 (544)
+|++|++++|.++.++.. ++.+++|++|++++| .+..+|..++.+++|++|++++|.+..+ |..++.+++|+.|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 678899999999887765 888999999999987 5678888899999999999999998876 5578889999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCC---ChhccCCCCccEEEEeCccCCCC-chhhcCCCCccEEEecCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI---PQEIACLSSLTGLHLSGNNFESL-PASIKQLSRLRSLHLEDCKML 156 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l 156 (544)
+|.....++...+..+++|++|++++|.+..+ +..++.+++|++|++++|.+..+ |..+..+++|+.|++++|...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 98866677776678899999999999988874 67788899999999999988754 567888999999999998765
Q ss_pred CCCCC----CCCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCCCCCCC-CCC--C---CCCccEEEEeCCCCCCcCC
Q 009084 157 QSLPE----LPLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGCNMLRS-LPA--L---PLCLESLNLTGCNMLRSLP 223 (544)
Q Consensus 157 ~~lp~----~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c~~l~~-l~~--~---~~~L~~L~Ls~c~~l~~lp 223 (544)
...+. .+++|+.|++++|......+. .+++|++|++++|...+. ++. . +++|+.|+|++|...+..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 44332 247889999988765444443 356788999999987652 221 1 7889999999875555445
Q ss_pred CC---CCCCCEEeEecCCCCCCCCcccCCCC--eeeeccCCCCCCCCCC---CCCccEEeccCCC
Q 009084 224 EL---PLCLKYLYLGDCNMLRSLPELSLCLQ--SLNAWNCNRLQSLPEI---PSCLQELDASVLE 280 (544)
Q Consensus 224 ~~---~~~L~~L~L~~~~~l~~lp~~~~~L~--~L~l~~c~~L~~l~~l---p~sL~~L~i~~C~ 280 (544)
.. +++|+.|++++|...+..|..+..++ .|++.++.--...|.. .++|+.|++++|+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 44 36788999999877766666654433 5666665433222221 2467777777764
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=6.5e-22 Score=218.68 Aligned_cols=235 Identities=19% Similarity=0.170 Sum_probs=175.4
Q ss_pred CCCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l 79 (544)
++|++|+|++|.++.++.. ++++++|++|+|++|......|..++++++|++|++++|.++.+|. .++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4799999999999988864 8999999999999986666668889999999999999999999987 5899999999999
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCCCCchh-h--cCCCCccEEEecCCCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFESLPAS-I--KQLSRLRSLHLEDCKM 155 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~~lp~~-l--~~l~~L~~L~L~~~~~ 155 (544)
++|. +..++...+.++++|++|++++|.+.. .|..++.+++|++|++++|.++.++.. + ..+++|+.|++++|..
T Consensus 105 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9987 566765458899999999999999887 566788999999999999999877653 3 3568999999999864
Q ss_pred CCCCCCCC------------------------------CCCCEEEEecCCCCCcCCCCC-----CCccEEEEeCCCCCCC
Q 009084 156 LQSLPELP------------------------------LCLKSLELRDCKMLQSLPALP-----LCLESLNLTGCNMLRS 200 (544)
Q Consensus 156 l~~lp~~~------------------------------~~L~~L~l~~~~~l~~l~~~~-----~~L~~L~Ls~c~~l~~ 200 (544)
....|..+ .+|+.|+++++......+..+ .+|+.|++++|...+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 43333211 355666666554333333333 2377777777776554
Q ss_pred CCCC---CCCccEEEEeCCCCCCcCCCC---CCCCCEEeEecC
Q 009084 201 LPAL---PLCLESLNLTGCNMLRSLPEL---PLCLKYLYLGDC 237 (544)
Q Consensus 201 l~~~---~~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~ 237 (544)
.+.. +++|++|+|++|...+..|.. +++|+.|++++|
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 4433 667777777775444433332 245556655544
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=7.8e-23 Score=214.96 Aligned_cols=279 Identities=16% Similarity=0.147 Sum_probs=206.6
Q ss_pred CCCCcEEEecCCCCc-ccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc-CCcc--CCCCCCcc
Q 009084 1 MEHLKRIYLGRTAIT-ELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ-LPSS--VADSNVLG 75 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~ 75 (544)
|++|++|++++|.+. .++ ..+.++++|++|+|++|......|..++++++|++|++++|.++. ++.. ++.+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 578999999999886 564 458999999999999987666668889999999999999999985 4444 88999999
Q ss_pred EEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCC--CCccEEEEeCccCCCCchh---------hcCCC
Q 009084 76 ILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACL--SSLTGLHLSGNNFESLPAS---------IKQLS 143 (544)
Q Consensus 76 ~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l--~~L~~L~l~~~~l~~lp~~---------l~~l~ 143 (544)
.|++++|......|...+..+++|++|++++|.+.. .+..+..+ .+|+.|++++|.+..++.. +..++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 999999985444465557899999999999999887 45555544 4566666666666544421 22345
Q ss_pred CccEEEecCCCCC---------------------------CC------CCC---------CCCCCCEEEEecCCCCCcCC
Q 009084 144 RLRSLHLEDCKML---------------------------QS------LPE---------LPLCLKSLELRDCKMLQSLP 181 (544)
Q Consensus 144 ~L~~L~L~~~~~l---------------------------~~------lp~---------~~~~L~~L~l~~~~~l~~l~ 181 (544)
+|+.|++++|... .. ++. ..++|+.|+++++......+
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 5666666555321 11 000 12589999998886655555
Q ss_pred CC---CCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcC-CC---CCCCCCEEeEecCCCCCCCCccc---C
Q 009084 182 AL---PLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSL-PE---LPLCLKYLYLGDCNMLRSLPELS---L 248 (544)
Q Consensus 182 ~~---~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~l-p~---~~~~L~~L~L~~~~~l~~lp~~~---~ 248 (544)
.. +++|+.|++++|...+..+.. +++|++|+|++|.. +.+ |. .+++|+.|++++|...+..|..+ +
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 43 568999999999988766654 78999999999654 444 43 35889999999997765556544 6
Q ss_pred CCCeeeeccCCCCCCCCC----CCCCccEEeccCCCC
Q 009084 249 CLQSLNAWNCNRLQSLPE----IPSCLQELDASVLET 281 (544)
Q Consensus 249 ~L~~L~l~~c~~L~~l~~----lp~sL~~L~i~~C~~ 281 (544)
+|+.|++.++ .++.+|. -.++|++|++++++-
T Consensus 372 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 372 NLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 7999999985 5666663 236899999998864
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=9.3e-22 Score=207.59 Aligned_cols=271 Identities=20% Similarity=0.275 Sum_probs=212.7
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|++|++++|.++.++. +..+++|++|++++| .+..++. ++++++|++|++++|.++.++. ++++++|++|+++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 5789999999999999887 999999999999997 4556665 8999999999999999999876 8999999999999
Q ss_pred cCCCCCccCh-------------------hhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcC
Q 009084 81 SCKGLVSLPR-------------------SLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQ 141 (544)
Q Consensus 81 ~c~~l~~lp~-------------------~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~ 141 (544)
+|. +..++. ..+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. ++.
T Consensus 143 ~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~ 219 (466)
T 1o6v_A 143 SNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGI 219 (466)
T ss_dssp EEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGG
T ss_pred CCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccc
Confidence 886 333322 01556788888999999888775 47889999999999999998875 788
Q ss_pred CCCccEEEecCCCCCCCCCC--CCCCCCEEEEecCCCCCcCC-CCCCCccEEEEeCCCCCCCCCCC-CCCccEEEEeCCC
Q 009084 142 LSRLRSLHLEDCKMLQSLPE--LPLCLKSLELRDCKMLQSLP-ALPLCLESLNLTGCNMLRSLPAL-PLCLESLNLTGCN 217 (544)
Q Consensus 142 l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~l~-~~~~~L~~L~Ls~c~~l~~l~~~-~~~L~~L~Ls~c~ 217 (544)
+++|+.|++++|.. ..++. .+++|+.|++++|......+ ..+++|+.|++++|...+..+.. +++|+.|++++|.
T Consensus 220 l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 220 LTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298 (466)
T ss_dssp CTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred cCCCCEEECCCCCc-ccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc
Confidence 99999999999863 34443 24789999998875433222 34678999999999876544322 8999999999964
Q ss_pred CCCcCC--CCCCCCCEEeEecCCCCCCCC-cccCCCCeeeeccCCCCCCCCCC--CCCccEEeccCCCC
Q 009084 218 MLRSLP--ELPLCLKYLYLGDCNMLRSLP-ELSLCLQSLNAWNCNRLQSLPEI--PSCLQELDASVLET 281 (544)
Q Consensus 218 ~l~~lp--~~~~~L~~L~L~~~~~l~~lp-~~~~~L~~L~l~~c~~L~~l~~l--p~sL~~L~i~~C~~ 281 (544)
+..++ ..+++|+.|++++|...+..| ..+++|+.|++.+| .+..++.+ .++|+.|++++|.-
T Consensus 299 -l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 299 -LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp -CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC
T ss_pred -ccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCcc
Confidence 44454 356899999999997655443 34578999999987 45555543 36899999999853
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.8e-21 Score=218.51 Aligned_cols=277 Identities=17% Similarity=0.109 Sum_probs=185.3
Q ss_pred CCCCcEEEecCCC-Cccc-CcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc-CCcc--CCCCCCcc
Q 009084 1 MEHLKRIYLGRTA-ITEL-PSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ-LPSS--VADSNVLG 75 (544)
Q Consensus 1 l~~L~~L~L~~~~-i~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~ 75 (544)
+++|++|+|++|. +..+ |..++++++|++|+|++|......|..++++++|++|+|++|.+.. +|.. ++++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 5789999999984 4577 5669999999999999987666668899999999999999999985 5554 88999999
Q ss_pred EEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCC--CCccEEEEeCccCC-CCchhhcCCCC------c
Q 009084 76 ILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACL--SSLTGLHLSGNNFE-SLPASIKQLSR------L 145 (544)
Q Consensus 76 ~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l--~~L~~L~l~~~~l~-~lp~~l~~l~~------L 145 (544)
.|++++|......+...++++++|++|++++|.+.. .+..++.+ ++|+.|++++|.+. ..|..+..+++ |
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 999999885444343348999999999999999877 56667666 78888888888776 34444444443 8
Q ss_pred cEEEecCCCCCCCCCC-----------------------------------------CCCCCCEEEEecCCCCCcCCC--
Q 009084 146 RSLHLEDCKMLQSLPE-----------------------------------------LPLCLKSLELRDCKMLQSLPA-- 182 (544)
Q Consensus 146 ~~L~L~~~~~l~~lp~-----------------------------------------~~~~L~~L~l~~~~~l~~l~~-- 182 (544)
+.|++++|......+. .+++|+.|+++++......+.
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 8888887743222111 024566677666543332222
Q ss_pred -CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC---CCCCCCEEeEecCCCCCCCCcc---cCCCCe
Q 009084 183 -LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE---LPLCLKYLYLGDCNMLRSLPEL---SLCLQS 252 (544)
Q Consensus 183 -~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~~~l~~lp~~---~~~L~~ 252 (544)
.+++|+.|+|++|...+..+.. +++|++|+|++|......|. .+++|+.|++++|......+.. +++|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 2456677777777665554433 66777777777543333233 2356677777776432222222 345666
Q ss_pred eeeccCCCCCCCCCCCCCccEEeccCC
Q 009084 253 LNAWNCNRLQSLPEIPSCLQELDASVL 279 (544)
Q Consensus 253 L~l~~c~~L~~l~~lp~sL~~L~i~~C 279 (544)
|++.++ .++.++. .++|+.|+++++
T Consensus 367 L~Ls~N-~l~~i~~-~~~L~~L~l~~N 391 (844)
T 3j0a_A 367 LDLRDN-ALTTIHF-IPSIPDIFLSGN 391 (844)
T ss_dssp EEEETC-CSCCCSS-CCSCSEEEEESC
T ss_pred EECCCC-CCCcccC-CCCcchhccCCC
Confidence 666663 3334433 234555555554
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2e-21 Score=195.49 Aligned_cols=230 Identities=20% Similarity=0.277 Sum_probs=174.9
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEec
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSS 81 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~ 81 (544)
+++.++++++.++.+|..+. ++|++|++++|......+..++++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 57889999988998887553 6899999999754333344688999999999999999877 77889999999999998
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCC---CCchhhcCCCCccEEEecCCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFE---SLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
|. +..+|.. + .++|++|++++|.+..++. .++.+++|+.|++++|.+. ..+..+.++++|+.|++++|.. +
T Consensus 110 n~-l~~l~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~ 184 (330)
T 1xku_A 110 NQ-LKELPEK-M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-T 184 (330)
T ss_dssp SC-CSBCCSS-C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-C
T ss_pred Cc-CCccChh-h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-c
Confidence 87 6678765 2 3789999999999888554 5788999999999999886 4456788899999999998874 4
Q ss_pred CCCC-CCCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCCC---C
Q 009084 158 SLPE-LPLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPELP---L 227 (544)
Q Consensus 158 ~lp~-~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~---~ 227 (544)
.+|. .+++|+.|+++++..-...+. .+.+|+.|++++|...+..+.. +++|++|+|++| .+..+|..+ +
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~ 263 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHK 263 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCC
Confidence 4553 347888888877653322222 3467888888888776655433 778888888884 566777654 5
Q ss_pred CCCEEeEecCCCC
Q 009084 228 CLKYLYLGDCNML 240 (544)
Q Consensus 228 ~L~~L~L~~~~~l 240 (544)
+|+.|++++|..-
T Consensus 264 ~L~~L~l~~N~i~ 276 (330)
T 1xku_A 264 YIQVVYLHNNNIS 276 (330)
T ss_dssp SCCEEECCSSCCC
T ss_pred CcCEEECCCCcCC
Confidence 6778888877543
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.4e-22 Score=216.14 Aligned_cols=130 Identities=24% Similarity=0.299 Sum_probs=81.3
Q ss_pred CCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEe
Q 009084 3 HLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFS 80 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~ 80 (544)
++++|++++|.++.++. .+.++++|++|+|++|......|..++++++|++|++++|.++.++ ..++++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 56677777777766543 4666777777777776433333445666777777777777666554 456666677777776
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCC--CChhccCCCCccEEEEeCccCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVME--IPQEIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~ 133 (544)
+|. +..++...++.+++|++|++++|.+.. +|..++.+++|++|++++|.++
T Consensus 109 ~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 109 ETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 664 444544335666666666666666654 5666666666666666666544
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.1e-21 Score=197.72 Aligned_cols=269 Identities=20% Similarity=0.241 Sum_probs=204.0
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEec
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSS 81 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~ 81 (544)
+++.++++++.++.+|..+ .++|++|++++|......|..+.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5899999999999999866 47999999999754444456799999999999999999977 67899999999999999
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCC---CCchhhcCCCCccEEEecCCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFE---SLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
|. +..+|.. +. ++|++|++++|.+..++. .++.+++|+.|++++|.++ ..+..+..+ +|+.|++++|.. +
T Consensus 112 n~-l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~ 185 (332)
T 2ft3_A 112 NH-LVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-T 185 (332)
T ss_dssp SC-CCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-S
T ss_pred Cc-CCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-C
Confidence 87 6678875 22 899999999999998765 4889999999999999886 445566777 999999999874 4
Q ss_pred CCCC-CCCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCCC---C
Q 009084 158 SLPE-LPLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPELP---L 227 (544)
Q Consensus 158 ~lp~-~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~---~ 227 (544)
.+|. .+++|+.|+++++......+. .+.+|+.|++++|...+..+.. +++|+.|+|++| .++.+|..+ +
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~ 264 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLK 264 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCT
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCc
Confidence 4554 457899999988754333323 3567899999999887655543 889999999995 666888754 7
Q ss_pred CCCEEeEecCCCCCCCCcc---------cCCCCeeeeccCCCC--CCCCC---CCCCccEEeccCCC
Q 009084 228 CLKYLYLGDCNMLRSLPEL---------SLCLQSLNAWNCNRL--QSLPE---IPSCLQELDASVLE 280 (544)
Q Consensus 228 ~L~~L~L~~~~~l~~lp~~---------~~~L~~L~l~~c~~L--~~l~~---lp~sL~~L~i~~C~ 280 (544)
+|+.|++++|.....-+.. ...|+.|++.+++.. ...|. -.++|+.|+++++.
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8999999998654322221 245789999987643 12221 22567778877764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.1e-21 Score=197.46 Aligned_cols=261 Identities=19% Similarity=0.223 Sum_probs=196.2
Q ss_pred CCCcccCcccCC-C-----CCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecCCC
Q 009084 12 TAITELPSSFEN-L-----PGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSCKG 84 (544)
Q Consensus 12 ~~i~~lp~~l~~-l-----~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c~~ 84 (544)
+.++++|..+.. + .+|+.++++++ .+..+|..+. ++|++|++++|.++.++ ..++++++|+.|++++|.
T Consensus 14 ~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~- 89 (332)
T 2ft3_A 14 PDLDSLPPTYSAMCPFGCHCHLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK- 89 (332)
T ss_dssp -----------CCCCSSCEEETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CccccCCCcccCCCCCCCcccCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-
Confidence 455677765432 2 37999999986 6778888663 79999999999999885 479999999999999987
Q ss_pred CCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCCC--CCCC
Q 009084 85 LVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKMLQ--SLPE 161 (544)
Q Consensus 85 l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~--~lp~ 161 (544)
+..++...+..+++|++|++++|.+..+|..+. ++|++|++++|.++.+|. .+.++++|+.|++++|.... ..+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 90 ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 666654448999999999999999999888765 899999999999998886 47899999999999997532 2333
Q ss_pred CC--CCCCEEEEecCCCCCcCCCC-CCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC----CCCCCCE
Q 009084 162 LP--LCLKSLELRDCKMLQSLPAL-PLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE----LPLCLKY 231 (544)
Q Consensus 162 ~~--~~L~~L~l~~~~~l~~l~~~-~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~----~~~~L~~ 231 (544)
.+ .+|+.|+++++. ++.+|.. ..+|++|++++|...+..+.. +++|+.|+|++|. ++.++. .+++|+.
T Consensus 168 ~~~~l~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 168 AFDGLKLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRE 245 (332)
T ss_dssp SSCSCCCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCE
T ss_pred cccCCccCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCE
Confidence 22 278899998775 4456543 468999999999887665443 7899999999964 444443 3578999
Q ss_pred EeEecCCCCCCCCccc---CCCCeeeeccCCCCCCCCC-----C-----CCCccEEeccCCCCC
Q 009084 232 LYLGDCNMLRSLPELS---LCLQSLNAWNCNRLQSLPE-----I-----PSCLQELDASVLETL 282 (544)
Q Consensus 232 L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~~-----l-----p~sL~~L~i~~C~~L 282 (544)
|++++|.. +.+|..+ +.|+.|++.++ .++.++. . ..+|+.|++.+++-.
T Consensus 246 L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 246 LHLDNNKL-SRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EECCSSCC-CBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EECCCCcC-eecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 99999854 4777654 67899999985 4555542 1 356899999998843
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.9e-21 Score=194.31 Aligned_cols=232 Identities=16% Similarity=0.199 Sum_probs=189.9
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
++|++|+|++|.++.++. .++++++|++|+|++|......|..++++++|++|++++|.++.+|..+. ++|+.|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 478999999999998876 59999999999999986555568889999999999999999999998775 899999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCC---CChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVME---IPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
+|. +..++...+..+++|+.|++++|.+.. .+..++.+++|++|++++|.++.+|..+. ++|+.|++++|....
T Consensus 130 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCE
T ss_pred CCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCc
Confidence 987 667777668999999999999999863 56778999999999999999999987664 899999999997544
Q ss_pred CCCC---CCCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC-C--
Q 009084 158 SLPE---LPLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE-L-- 225 (544)
Q Consensus 158 ~lp~---~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~-~-- 225 (544)
..+. ..++|+.|+++++......+. .+++|+.|++++|... .+|.. +++|++|+|++| .++.++. .
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~ 284 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN-NISAIGSNDFC 284 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS-CCCCCCTTSSS
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC-cCCccChhhcC
Confidence 3333 347899999988754333332 3568999999999876 56654 789999999995 5555553 2
Q ss_pred -------CCCCCEEeEecCCCC
Q 009084 226 -------PLCLKYLYLGDCNML 240 (544)
Q Consensus 226 -------~~~L~~L~L~~~~~l 240 (544)
...|+.|++.+|+..
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSC
T ss_pred CcccccccccccceEeecCccc
Confidence 256778888888753
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.2e-21 Score=209.68 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=113.4
Q ss_pred CCCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~ 78 (544)
+++|++|+|++|.++.++. .++++++|++|+|++|......|..++++++|++|++++|.++.++. .++++++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 5689999999999987764 48889999999999875444445678899999999999999988876 688999999999
Q ss_pred EecCCCCC-ccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCc----cEEEEeCccCCCCchhhcCCCCccEEEecC
Q 009084 79 FSSCKGLV-SLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSL----TGLHLSGNNFESLPASIKQLSRLRSLHLED 152 (544)
Q Consensus 79 l~~c~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L----~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~ 152 (544)
+++|.... .+|.. +.++++|++|++++|.+..+ +..++.+.+| +.|++++|.++.++.......+|+.|++++
T Consensus 131 L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 131 VAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp CCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred cCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 99987433 35666 88899999999999988774 4556666666 677777777665443332233455555544
Q ss_pred C
Q 009084 153 C 153 (544)
Q Consensus 153 ~ 153 (544)
|
T Consensus 210 n 210 (570)
T 2z63_A 210 N 210 (570)
T ss_dssp C
T ss_pred c
Confidence 3
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=3.1e-22 Score=199.96 Aligned_cols=242 Identities=19% Similarity=0.226 Sum_probs=189.0
Q ss_pred CCccEEeeecCCCCC--ccCcccccCccCcEeEee-cCCCc-cCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCC
Q 009084 25 PGLEVLFVEDCSKLD--KLPDNIGNLKSLGHISAA-GSAIS-QLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLG 100 (544)
Q Consensus 25 ~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~L~-~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~ 100 (544)
.+++.|+|++|...+ .+|..++++++|++|+++ +|.+. .+|..++++++|++|++++|.....+|.. +..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCC
Confidence 578889999876655 788888899999999998 47777 77888888999999999888754567766 78888999
Q ss_pred EEEEeccCCCC-CChhccCCCCccEEEEeCccCC-CCchhhcCCC-CccEEEecCCCCCCCCCCCCCCCCEEEEecCCCC
Q 009084 101 LLRISYSAVME-IPQEIACLSSLTGLHLSGNNFE-SLPASIKQLS-RLRSLHLEDCKMLQSLPELPLCLKSLELRDCKML 177 (544)
Q Consensus 101 ~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~~~~l 177 (544)
+|++++|.+.. +|..++.+++|++|++++|.++ .+|..+..++ +|+.|++++|.....+|..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~------------ 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------------ 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC------------
Confidence 99999888874 8888888899999999998888 7888888887 8888888888644333332211
Q ss_pred CcCCCCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC--CCCCCCEEeEecCCCCCCCCccc---CC
Q 009084 178 QSLPALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE--LPLCLKYLYLGDCNMLRSLPELS---LC 249 (544)
Q Consensus 178 ~~l~~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~--~~~~L~~L~L~~~~~l~~lp~~~---~~ 249 (544)
. .|+.|++++|...+..|.. +++|+.|+|++|.....+|. .+++|+.|++++|...+.+|..+ ..
T Consensus 197 ------l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 197 ------L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ------C-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ------C-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 1 2788888888776665544 78999999999766555554 45789999999999877888755 67
Q ss_pred CCeeeeccCCCCCCCCCCC--CCccEEeccCCCCCCCCC
Q 009084 250 LQSLNAWNCNRLQSLPEIP--SCLQELDASVLETLSKPS 286 (544)
Q Consensus 250 L~~L~l~~c~~L~~l~~lp--~sL~~L~i~~C~~L~~~~ 286 (544)
|+.|++.++.--..+|... ++|+.|++.+++.+...|
T Consensus 270 L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 8999999976655777642 578889999988776654
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.5e-20 Score=205.95 Aligned_cols=274 Identities=20% Similarity=0.212 Sum_probs=206.9
Q ss_pred CcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecC
Q 009084 4 LKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSC 82 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c 82 (544)
-+.++.++++++++|..+. ++|++|+|++|......+..++++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 3578899999999998664 7999999999754444445699999999999999999976 566889999999999998
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCC-hhccCCCCccEEEEeCccCCCC-chhhcCCCCccEEEecCCCCCCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIP-QEIACLSSLTGLHLSGNNFESL-PASIKQLSRLRSLHLEDCKMLQSLP 160 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp 160 (544)
. +..+|...+.++++|++|++++|.+..++ ..++.+++|++|++++|.++.+ |..+.++++|++|++++|......+
T Consensus 84 ~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 E-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred c-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 6 77888766899999999999999998865 5799999999999999999855 4568899999999999997443322
Q ss_pred C-----CCCCCCEEEEecCCCCCcCCCC------------------------------CCCccEEEEeCCCCCCCCCCCC
Q 009084 161 E-----LPLCLKSLELRDCKMLQSLPAL------------------------------PLCLESLNLTGCNMLRSLPALP 205 (544)
Q Consensus 161 ~-----~~~~L~~L~l~~~~~l~~l~~~------------------------------~~~L~~L~Ls~c~~l~~l~~~~ 205 (544)
. ..++|+.|+++++......+.. ..+|+.|++++|...+..+..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 2 2368999999887433322221 1467888888887776666552
Q ss_pred -----CCccEEEEeCCCCCCcCCCC---CCCCCEEeEecCCCCCCCCccc---CCCCeeeeccCCCCC-----CCCC---
Q 009084 206 -----LCLESLNLTGCNMLRSLPEL---PLCLKYLYLGDCNMLRSLPELS---LCLQSLNAWNCNRLQ-----SLPE--- 266 (544)
Q Consensus 206 -----~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~-----~l~~--- 266 (544)
++|+.|+|++|......|.. +++|+.|++++|...+..|..+ .+|+.|++.++..-. .+|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 45999999997554444443 4789999999997766655544 567788887643221 2221
Q ss_pred ----CCCCccEEeccCCC
Q 009084 267 ----IPSCLQELDASVLE 280 (544)
Q Consensus 267 ----lp~sL~~L~i~~C~ 280 (544)
-.++|++|++++|.
T Consensus 323 ~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp TTTTTCTTCCEEECCSCC
T ss_pred hhcccCCCCCEEECCCCc
Confidence 22577788777764
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=8e-20 Score=199.69 Aligned_cols=133 Identities=24% Similarity=0.322 Sum_probs=116.2
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccC-cccccCccCcEeEeecCCCccCCc-cCCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLP-DNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~ 78 (544)
+++++|+|++|.|+.+|. .|+++++|++|+|++| .+..+| ..|.++++|++|+|++|+++.+|. .++++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 368999999999999986 5999999999999997 455554 468999999999999999999886 578999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCC--CChhccCCCCccEEEEeCccCCCCc
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME--IPQEIACLSSLTGLHLSGNNFESLP 136 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~lp 136 (544)
+++|. +..++...++++++|++|++++|.+.. +|..++.+++|++|++++|+++.++
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 99987 677877668999999999999999876 6788899999999999999887543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=193.97 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=126.8
Q ss_pred EEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecCC
Q 009084 6 RIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSCK 83 (544)
Q Consensus 6 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c~ 83 (544)
..+++++.++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|.++.++ ..++++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 34555555666655432 356666666543 333333 4556666666666666665543 345566666666666654
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCCCh--hccCCCCccEEEEeCc-cCCCCc-hhhcCCCCccEEEecCCCCCCCC
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ--EIACLSSLTGLHLSGN-NFESLP-ASIKQLSRLRSLHLEDCKMLQSL 159 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~-~l~~lp-~~l~~l~~L~~L~L~~~~~l~~l 159 (544)
+..++...+..+++|++|++++|.+..+|. .++.+++|++|++++| .++.++ ..+.++++|+.|++++|......
T Consensus 112 -l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 -LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp -CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred -CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 445555445556666666666666555554 4555666666666665 344442 34555666666666665533333
Q ss_pred CCCC---CCCCEEEEecCCCCCcCCC----CCCCccEEEEeCCCCCCCCCCC------CCCccEEEEeCCCCCC----cC
Q 009084 160 PELP---LCLKSLELRDCKMLQSLPA----LPLCLESLNLTGCNMLRSLPAL------PLCLESLNLTGCNMLR----SL 222 (544)
Q Consensus 160 p~~~---~~L~~L~l~~~~~l~~l~~----~~~~L~~L~Ls~c~~l~~l~~~------~~~L~~L~Ls~c~~l~----~l 222 (544)
|..+ ++|+.|+++++. ++.++. .+++|+.|++++|...+..+.. ...++.++++++.... .+
T Consensus 191 ~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 3322 345555555543 233322 1345666666666554422211 3445555555543211 22
Q ss_pred CC---CCCCCCEEeEecCCCCCCCCcc----cCCCCeeeeccCC
Q 009084 223 PE---LPLCLKYLYLGDCNMLRSLPEL----SLCLQSLNAWNCN 259 (544)
Q Consensus 223 p~---~~~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~c~ 259 (544)
|. .+++|+.|++++|... .+|.. +++|+.|++.+++
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 32 3355666666665432 44432 2445666666543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=6.9e-20 Score=191.77 Aligned_cols=231 Identities=19% Similarity=0.260 Sum_probs=147.6
Q ss_pred CcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecC
Q 009084 4 LKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSC 82 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c 82 (544)
...++.++..++.+|..+. ++++.|+|++|......+..+.++++|++|+|++|.+..++ ..+.++++|+.|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566777777777776553 67777888776443444456777788888888777777665 45677788888888776
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCc-cCCCCch-hhcCCCCccEEEecCCCCCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGN-NFESLPA-SIKQLSRLRSLHLEDCKMLQSL 159 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~-~l~~lp~-~l~~l~~L~~L~L~~~~~l~~l 159 (544)
. +..++...+..+++|++|++++|.+..++. .+..+++|++|++++| .+..++. .+.++++|+.|++++|. ++.+
T Consensus 123 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~ 200 (440)
T 3zyj_A 123 R-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREI 200 (440)
T ss_dssp C-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSC
T ss_pred c-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccc
Confidence 5 566666557777788888888887777544 5677778888888774 5555554 46777788888887775 4445
Q ss_pred CCC--CCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC----CCC
Q 009084 160 PEL--PLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE----LPL 227 (544)
Q Consensus 160 p~~--~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~----~~~ 227 (544)
|.+ +++|+.|+++++......+. .+.+|+.|+|++|.+....+.. +++|+.|+|++| .++.+|. .++
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLH 279 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCT
T ss_pred cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcccc
Confidence 532 24556666655532222122 2345666777776665444433 566777777774 4444442 235
Q ss_pred CCCEEeEecCCC
Q 009084 228 CLKYLYLGDCNM 239 (544)
Q Consensus 228 ~L~~L~L~~~~~ 239 (544)
+|+.|+|++|+.
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 666666666653
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=5.7e-20 Score=193.08 Aligned_cols=230 Identities=21% Similarity=0.244 Sum_probs=156.4
Q ss_pred CcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecC
Q 009084 4 LKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSC 82 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c 82 (544)
...++.++..++.+|..+. ++|++|+|++|......|..|.++++|++|+|++|.+..++ ..+.++++|+.|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777777888886553 67888888887554445667888888888888888888665 56778888888888887
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCc-cCCCCch-hhcCCCCccEEEecCCCCCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGN-NFESLPA-SIKQLSRLRSLHLEDCKMLQSL 159 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~-~l~~lp~-~l~~l~~L~~L~L~~~~~l~~l 159 (544)
. +..++...+..+++|++|++++|.+..++. .+..+++|+.|++++| .+..++. .+.++++|+.|++++|. +..+
T Consensus 134 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~ 211 (452)
T 3zyi_A 134 W-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDM 211 (452)
T ss_dssp C-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSC
T ss_pred c-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccc
Confidence 6 666776657778888888888888877554 5778888888888874 5666654 46778888888888875 3444
Q ss_pred CCC--CCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC----CCC
Q 009084 160 PEL--PLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE----LPL 227 (544)
Q Consensus 160 p~~--~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~----~~~ 227 (544)
|.. +++|+.|+++++......+. .+.+|+.|++++|......+.. +++|+.|+|++| .+..+|. .++
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR 290 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCT
T ss_pred ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhcccc
Confidence 433 25666666655543322222 2446667777777665544433 566777777774 4444442 235
Q ss_pred CCCEEeEecCC
Q 009084 228 CLKYLYLGDCN 238 (544)
Q Consensus 228 ~L~~L~L~~~~ 238 (544)
+|+.|+|++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 56666666664
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.3e-20 Score=187.35 Aligned_cols=229 Identities=22% Similarity=0.281 Sum_probs=143.4
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcc-cccCccCcEeEeecCCCccC---CccCCCCCCccEEEEe
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDN-IGNLKSLGHISAAGSAISQL---PSSVADSNVLGILDFS 80 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~l~ 80 (544)
+.++.+++.++.+|..+ .++|++|+|++| .+..+|.. +.++++|++|++++|.++.+ +..+..+++|+.|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777777788887654 367888888876 45566654 67888888888888877754 4556677888888888
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh--hccCCCCccEEEEeCccCCC-CchhhcCCCCccEEEecCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ--EIACLSSLTGLHLSGNNFES-LPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
+|. +..+|.. +..+++|++|++++|.+..++. .+..+++|++|++++|.+.. .+..+..+++|+.|++++|....
T Consensus 87 ~n~-i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCS-EEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCc-cccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 876 5566665 6778888888888887777553 67778888888888887773 44557778888888888876433
Q ss_pred -CCCCC---CCCCCEEEEecCCCCCcCCC---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCCC-
Q 009084 158 -SLPEL---PLCLKSLELRDCKMLQSLPA---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPELP- 226 (544)
Q Consensus 158 -~lp~~---~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~- 226 (544)
.+|.. +++|+.|+++++......+. .+++|+.|++++|...+..+.. +++|+.|+|++|...+..|..+
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 23332 24555555555432222122 2345556666665544322211 4556666666644433333322
Q ss_pred ---CCCCEEeEecCC
Q 009084 227 ---LCLKYLYLGDCN 238 (544)
Q Consensus 227 ---~~L~~L~L~~~~ 238 (544)
.+|+.|++++|+
T Consensus 245 ~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 245 HFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hhhccCCEEEccCCC
Confidence 245555555543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=7.9e-20 Score=185.59 Aligned_cols=252 Identities=17% Similarity=0.187 Sum_probs=189.4
Q ss_pred CCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCCCCCccChhhhcCCCCCCE
Q 009084 23 NLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGL 101 (544)
Q Consensus 23 ~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~ 101 (544)
.|+.....+.++ ..++.+|..+. ++|++|++++|.++.++. .++++++|+.|++++|. +..++...+.++++|++
T Consensus 29 ~C~~~~~c~~~~-~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSS-GSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCS-TTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCC-CCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCE
Confidence 466667788877 47788888654 589999999999998876 78899999999999986 66665544888999999
Q ss_pred EEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCch--hhcCCCCccEEEecCCCCCCCCCC-C---CCCCCEEEEecC
Q 009084 102 LRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPA--SIKQLSRLRSLHLEDCKMLQSLPE-L---PLCLKSLELRDC 174 (544)
Q Consensus 102 L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~-~---~~~L~~L~l~~~ 174 (544)
|++++|.+..++.. ++.+++|++|++++|.++.+|. .+..+++|+.|++++|..++.++. . .++|+.|+++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 99999999988776 8889999999999999998886 688899999999999865655532 2 467888999887
Q ss_pred CCCCcCCCC---CCCccEEEEeCCCCCCCCCCC----CCCccEEEEeCCCCCCcCCC------CCCCCCEEeEecCCCCC
Q 009084 175 KMLQSLPAL---PLCLESLNLTGCNMLRSLPAL----PLCLESLNLTGCNMLRSLPE------LPLCLKYLYLGDCNMLR 241 (544)
Q Consensus 175 ~~l~~l~~~---~~~L~~L~Ls~c~~l~~l~~~----~~~L~~L~Ls~c~~l~~lp~------~~~~L~~L~L~~~~~l~ 241 (544)
......|.. +.+|++|++++|.. +.++.. +++|+.|++++|......+. ....++.+++.++....
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 654444443 45688899999886 334332 78999999999644332222 23568888888875432
Q ss_pred ----CCCc---ccCCCCeeeeccCCCCCCCCC----CCCCccEEeccCCC
Q 009084 242 ----SLPE---LSLCLQSLNAWNCNRLQSLPE----IPSCLQELDASVLE 280 (544)
Q Consensus 242 ----~lp~---~~~~L~~L~l~~c~~L~~l~~----lp~sL~~L~i~~C~ 280 (544)
.+|. .+++|+.|++.++ .++.+|. -.++|++|++++++
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 2443 3367899999886 5667764 23678899998885
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=3.8e-19 Score=174.88 Aligned_cols=215 Identities=20% Similarity=0.249 Sum_probs=162.8
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecCC
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSCK 83 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c~ 83 (544)
++++.+++.++.+|..+ .++|++|++++|......+..+..+++|++|++++|.++.+ |..++.+++|+.|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 57888999999998754 57999999999754444445689999999999999999977 6788999999999999997
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCCCCCCCCC
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCKMLQSLPE 161 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~ 161 (544)
.+..++...+..+++|++|++++|.+..+ +..++.+++|++|++++|.++.++.. +..+++|+.|++++|.. +.++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCH
Confidence 67777555588999999999999999885 66788999999999999999988754 78899999999999853 23222
Q ss_pred CCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCC----CCCCCCCEEeE
Q 009084 162 LPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLP----ELPLCLKYLYL 234 (544)
Q Consensus 162 ~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp----~~~~~L~~L~L 234 (544)
. .-..+.+|+.|++++|...+..|.. +++|+.|+|++| .++.++ ..+++|+.|++
T Consensus 171 ~-----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 171 R-----------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp T-----------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEEC
T ss_pred H-----------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEec
Confidence 1 0012345666666666665544443 567788888774 444444 23467777777
Q ss_pred ecCCCC
Q 009084 235 GDCNML 240 (544)
Q Consensus 235 ~~~~~l 240 (544)
++|+..
T Consensus 233 ~~N~~~ 238 (285)
T 1ozn_A 233 NDNPWV 238 (285)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 777543
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=180.58 Aligned_cols=230 Identities=21% Similarity=0.262 Sum_probs=158.4
Q ss_pred cEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEEecCCCCCcc---ChhhhcCCCCCCEEE
Q 009084 28 EVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDFSSCKGLVSL---PRSLLLGLSSLGLLR 103 (544)
Q Consensus 28 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l---p~~~~~~l~~L~~L~ 103 (544)
+.++.++ ..++.+|..+. ++|++|++++|.++.+|.. ++++++|+.|++++|. +..+ +.. +..+++|++|+
T Consensus 10 ~~l~c~~-~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNS-KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQS-DFGTTSLKYLD 84 (306)
T ss_dssp TEEECCS-SCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHH-HHSCSCCCEEE
T ss_pred CEEEcCC-CCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccc-cccccccCEEE
Confidence 5677877 46788887553 7999999999999999876 6899999999999987 4443 444 66799999999
Q ss_pred EeccCCCCCChhccCCCCccEEEEeCccCCCCch--hhcCCCCccEEEecCCCCCCCCCCC---CCCCCEEEEecCCCCC
Q 009084 104 ISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPA--SIKQLSRLRSLHLEDCKMLQSLPEL---PLCLKSLELRDCKMLQ 178 (544)
Q Consensus 104 l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~~~~l~ 178 (544)
+++|.+..+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|......+.. .++|+.|+++++....
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 9999999999889999999999999999998774 7889999999999999755444432 3566677766654322
Q ss_pred -cCCC---CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCC----CCCCCCEEeEecCCCCCCCCccc
Q 009084 179 -SLPA---LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPE----LPLCLKYLYLGDCNMLRSLPELS 247 (544)
Q Consensus 179 -~l~~---~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~~l~~lp~~~ 247 (544)
.+|. .+++|+.|++++|...+..|.. +++|+.|+|++|. +..++. .+++|+.|++++|...+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-- 241 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-- 241 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSS--
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHH--
Confidence 1222 2345666666666554443332 4556666665532 333321 224455555555433322221
Q ss_pred CCCCeeeeccCCCCCCCCCCCCCccEEeccCCC
Q 009084 248 LCLQSLNAWNCNRLQSLPEIPSCLQELDASVLE 280 (544)
Q Consensus 248 ~~L~~L~l~~c~~L~~l~~lp~sL~~L~i~~C~ 280 (544)
.+..+|++|++|++++++
T Consensus 242 ---------------~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 242 ---------------ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ---------------SCCCCCTTCCEEECTTCC
T ss_pred ---------------HHHhhhccCCEEEccCCC
Confidence 122345678888888764
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=5e-19 Score=185.91 Aligned_cols=207 Identities=21% Similarity=0.279 Sum_probs=150.8
Q ss_pred CccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEE
Q 009084 26 GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRI 104 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 104 (544)
....++.++ ..+..+|..+. ++|++|+|++|.++.+ +..++++++|+.|++++|. +..++...+.++++|++|++
T Consensus 55 ~~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTR-RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECC-CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEEC
Confidence 356777776 57788887654 7999999999999977 5678999999999999987 66776555899999999999
Q ss_pred eccCCCCCChh-ccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCCCCCCC----CCCCCCEEEEecCCCCC
Q 009084 105 SYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKMLQSLPE----LPLCLKSLELRDCKMLQ 178 (544)
Q Consensus 105 ~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~l~~~~~l~ 178 (544)
++|.+..+|.. ++.+++|++|++++|.++.+|. .+.++++|+.|++++|..++.++. ..++|+.|+++++ .++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccc
Confidence 99999997654 8899999999999999998875 678999999999999887777664 2356777777655 333
Q ss_pred cCCC--CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCC---CCCCCEEeEecC
Q 009084 179 SLPA--LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPEL---PLCLKYLYLGDC 237 (544)
Q Consensus 179 ~l~~--~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~ 237 (544)
.+|. .+.+|+.|+|++|.+.+..|.. +++|+.|+|++|......+.. +++|+.|+|++|
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 3442 2345666666666655443332 556666666664333222322 244555555554
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=8.4e-19 Score=183.52 Aligned_cols=208 Identities=23% Similarity=0.320 Sum_probs=154.0
Q ss_pred CccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEE
Q 009084 26 GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRI 104 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 104 (544)
..+.++..+ ..+..+|..+. ++++.|+|++|.++.++ ..+.++++|+.|++++|. +..++...+.++++|++|++
T Consensus 44 ~~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVR-KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCS-CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCC-CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEEC
Confidence 466777776 57889998664 78999999999999776 678999999999999987 67777666899999999999
Q ss_pred eccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCCCCCCCC----CCCCCEEEEecCCCCC
Q 009084 105 SYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKMLQSLPEL----PLCLKSLELRDCKMLQ 178 (544)
Q Consensus 105 ~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~~~~l~ 178 (544)
++|.+..++. .+..+++|++|++++|.++.++. .+.++++|+.|++++|..+..++.. .++|+.|+++++ .++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCc
Confidence 9999999776 58999999999999999998875 6789999999999998877766542 356777777665 344
Q ss_pred cCCC--CCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCC---CCCCCEEeEecCC
Q 009084 179 SLPA--LPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPEL---PLCLKYLYLGDCN 238 (544)
Q Consensus 179 ~l~~--~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~ 238 (544)
.+|. .+.+|+.|+|++|.+.+..+.. +++|+.|+|++|......+.. +++|+.|+|++|.
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 4443 2345666666666555443433 556666666664322222222 2455555555553
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.1e-19 Score=175.55 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=156.8
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCC-CccC-CccCCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSA-ISQL-PSSVADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~ 78 (544)
++|++|++++|.++.++. .+..+++|++|+|++|......|..+..+++|++|++++|. +..+ |..+..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 579999999999998875 58999999999999985544457789999999999999997 8887 67889999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKML 156 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l 156 (544)
+++|. +..++...+..+++|++|++++|.+..++. .++.+++|++|++++|.++.+|. .+..+++|+.|++++|...
T Consensus 112 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99987 555654448899999999999999998665 48899999999999999998876 4889999999999999744
Q ss_pred CCCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCC---CCCCccEEEEeCCCC
Q 009084 157 QSLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPA---LPLCLESLNLTGCNM 218 (544)
Q Consensus 157 ~~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~---~~~~L~~L~Ls~c~~ 218 (544)
...|..+. .+++|+.|++++|...+..+. .+++|+.|+|++|..
T Consensus 191 ~~~~~~~~------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 191 HVHPHAFR------------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECTTTTT------------------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCHhHcc------------------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 33333221 124566666666655443322 167777777777543
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.8e-20 Score=185.60 Aligned_cols=71 Identities=24% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCccEEEEeCCCCCCCCCCC----CCCccEEEEeCCCCCCcCCCCC-CCCCEEeEecCCCCCCCCc--ccCCCCeeeecc
Q 009084 185 LCLESLNLTGCNMLRSLPAL----PLCLESLNLTGCNMLRSLPELP-LCLKYLYLGDCNMLRSLPE--LSLCLQSLNAWN 257 (544)
Q Consensus 185 ~~L~~L~Ls~c~~l~~l~~~----~~~L~~L~Ls~c~~l~~lp~~~-~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~ 257 (544)
.+|+.|++++|...+..|.. +++|++|+|++| .++.+|..+ ++|+.|++++|.. +.+|. .++.|+.|++.+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSSCC-CSCCCTTTSCEEEEEECTT
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCCCC-CCChhHhhCCCCCEEeccC
Confidence 45555555555554433211 455666666653 334555444 3555666665533 22233 123345555544
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.5e-19 Score=180.24 Aligned_cols=230 Identities=20% Similarity=0.258 Sum_probs=155.7
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCC-CCccCcccc-------cCccCcEeEeecCCCc-cCCccC--CCC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSK-LDKLPDNIG-------NLKSLGHISAAGSAIS-QLPSSV--ADS 71 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~-l~~lp~~l~-------~l~~L~~L~L~~~~l~-~lp~~~--~~l 71 (544)
+|++|++++|.+ .+|..+... |+.|+|++|.. ...+|..+. ++++|++|++++|.++ .+|..+ +.+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 466777777777 667655433 77777777644 134555444 6778888888888877 567665 778
Q ss_pred CCccEEEEecCCCCCccChhhhcCC-----CCCCEEEEeccCCCCCC-hhccCCCCccEEEEeCccCCC---Cchhh--c
Q 009084 72 NVLGILDFSSCKGLVSLPRSLLLGL-----SSLGLLRISYSAVMEIP-QEIACLSSLTGLHLSGNNFES---LPASI--K 140 (544)
Q Consensus 72 ~~L~~L~l~~c~~l~~lp~~~~~~l-----~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~---lp~~l--~ 140 (544)
++|+.|++++|. +..+|.. +..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.. +|..+ .
T Consensus 121 ~~L~~L~Ls~N~-l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVS-WATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCB-CSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCC-CcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 888888888876 4444543 4444 78888888888877754 667788888888888887653 34444 6
Q ss_pred CCCCccEEEecCCCCCCCCCC-------CCCCCCEEEEecCCCCCcCC----CCCCCccEEEEeCCCCCCCCCCC-CCCc
Q 009084 141 QLSRLRSLHLEDCKMLQSLPE-------LPLCLKSLELRDCKMLQSLP----ALPLCLESLNLTGCNMLRSLPAL-PLCL 208 (544)
Q Consensus 141 ~l~~L~~L~L~~~~~l~~lp~-------~~~~L~~L~l~~~~~l~~l~----~~~~~L~~L~Ls~c~~l~~l~~~-~~~L 208 (544)
.+++|++|++++|.. +.++. ..++|+.|+++++......| ..+.+|+.|++++|.+. .+|.. .++|
T Consensus 199 ~l~~L~~L~L~~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L 276 (312)
T 1wwl_A 199 KFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL 276 (312)
T ss_dssp SCTTCCEEECTTSCC-CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEE
T ss_pred cCCCCCEEECCCCcC-cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCc
Confidence 778888888888753 32221 23678888887765433332 12467888999888876 66655 5689
Q ss_pred cEEEEeCCCCCCcCCC--CCCCCCEEeEecCCCC
Q 009084 209 ESLNLTGCNMLRSLPE--LPLCLKYLYLGDCNML 240 (544)
Q Consensus 209 ~~L~Ls~c~~l~~lp~--~~~~L~~L~L~~~~~l 240 (544)
++|+|++| .++.+|. .+++|+.|++++|+..
T Consensus 277 ~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 277 SVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEECCSS-CCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred eEEECCCC-CCCCChhHhhCCCCCEEeccCCCCC
Confidence 99999984 5666665 3467788888888653
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1.3e-18 Score=166.59 Aligned_cols=201 Identities=18% Similarity=0.207 Sum_probs=128.9
Q ss_pred CCCCcccCcccCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCC-CccCCc-cCCCCCCccEEEEecCCCCCc
Q 009084 11 RTAITELPSSFENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSA-ISQLPS-SVADSNVLGILDFSSCKGLVS 87 (544)
Q Consensus 11 ~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~-l~~lp~-~~~~l~~L~~L~l~~c~~l~~ 87 (544)
...++++|. +. ++|++|++++|. ++.+|. .++++++|++|++++|. ++.++. .+.++++|+.|++++|..+..
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccCccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 333666665 32 367777777753 444443 56677777777777775 666654 456677777777776444666
Q ss_pred cChhhhcCCCCCCEEEEeccCCCCCChhccCCCCcc---EEEEeCc-cCCCCch-hhcCCCCcc-EEEecCCCCCCCCCC
Q 009084 88 LPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLT---GLHLSGN-NFESLPA-SIKQLSRLR-SLHLEDCKMLQSLPE 161 (544)
Q Consensus 88 lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~---~L~l~~~-~l~~lp~-~l~~l~~L~-~L~L~~~~~l~~lp~ 161 (544)
++...+..+++|++|++++|.+..+|. ++.+++|+ .|++++| .++.+|. .+.++++|+ .|++++|.. +.+|.
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~ 173 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG 173 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECT
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCH
Confidence 665446677777777777777776665 66666666 7777777 7776664 366677777 777777653 24443
Q ss_pred C---CCCCCEEEEecCCCCCcCCC----CC-CCccEEEEeCCCCCCCCCCCCCCccEEEEeCCC
Q 009084 162 L---PLCLKSLELRDCKMLQSLPA----LP-LCLESLNLTGCNMLRSLPALPLCLESLNLTGCN 217 (544)
Q Consensus 162 ~---~~~L~~L~l~~~~~l~~l~~----~~-~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~ 217 (544)
. .++|+.|+++++..++.++. .. .+|+.|++++|+.....+..+++|+.|+++++.
T Consensus 174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 2 14567777766655555543 23 678889998887754333348899999988754
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=7.8e-18 Score=164.23 Aligned_cols=148 Identities=24% Similarity=0.358 Sum_probs=109.8
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccC-cccccCccCcEeEeecCCCccCCccC-CCCCCccEEEEe
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLP-DNIGNLKSLGHISAAGSAISQLPSSV-ADSNVLGILDFS 80 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~l~ 80 (544)
+++.++++++.++.+|..+. ++|+.|+|++|. +..+| ..+.++++|++|++++|.++.+|..+ ..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46778888888888886553 678888888864 44444 45778888888888888888777654 678888888888
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCK 154 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~ 154 (544)
+|. +..++...+..+++|++|++++|.+..++. .++.+++|++|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 876 566666556778888888888888777543 467788888888888888777754 5777788888887775
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.5e-18 Score=166.09 Aligned_cols=199 Identities=16% Similarity=0.188 Sum_probs=152.4
Q ss_pred CCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEec-cCCCCC
Q 009084 35 CSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISY-SAVMEI 112 (544)
Q Consensus 35 c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~-~~~~~l 112 (544)
|..++.+|. +. .+|++|++++|.++.+|. .++++++|+.|++++|..++.++...+..+++|++|++++ |.+..+
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 455788887 43 489999999999998876 6788999999999998767788875588899999999998 788886
Q ss_pred C-hhccCCCCccEEEEeCccCCCCchhhcCCCCcc---EEEecCCCCCCCCCCC----CCCCC-EEEEecCCCCCcCCCC
Q 009084 113 P-QEIACLSSLTGLHLSGNNFESLPASIKQLSRLR---SLHLEDCKMLQSLPEL----PLCLK-SLELRDCKMLQSLPAL 183 (544)
Q Consensus 113 p-~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~---~L~L~~~~~l~~lp~~----~~~L~-~L~l~~~~~l~~l~~~ 183 (544)
+ ..+..+++|++|++++|.++.+|. +..+++|+ .|++++|..++.++.. .++|+ .|+++++. ++.+|..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHh
Confidence 5 467889999999999999998886 77888887 9999998556665542 36788 88887764 4455542
Q ss_pred ---CCCccEEEEeCCCCCCCCCCC----C-CCccEEEEeCCCCCCcCCC-CCCCCCEEeEecCCC
Q 009084 184 ---PLCLESLNLTGCNMLRSLPAL----P-LCLESLNLTGCNMLRSLPE-LPLCLKYLYLGDCNM 239 (544)
Q Consensus 184 ---~~~L~~L~Ls~c~~l~~l~~~----~-~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~~ 239 (544)
..+|+.|++++|..++.++.. + ++|+.|+|++ +.++.+|. .+.+|+.|++.++..
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCTTCTTCSEEECTTC--
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChhHhccCceeeccCccC
Confidence 246888999999644444432 5 7899999998 55666764 478899999887653
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.7e-20 Score=185.20 Aligned_cols=209 Identities=12% Similarity=0.063 Sum_probs=127.0
Q ss_pred cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCC
Q 009084 21 FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLG 100 (544)
Q Consensus 21 l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~ 100 (544)
+..+++|++|+|++|......|..++.+++|++|++++|.++.++. +..+++|++|++++|. +..++ ..++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-----CCCCcC
Confidence 4455677777777764433344556777777777777777765554 6677777777777765 33333 236677
Q ss_pred EEEEeccCCCCCChhccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCCCCCCC----CCCCCCEEEEecCC
Q 009084 101 LLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKMLQSLPE----LPLCLKSLELRDCK 175 (544)
Q Consensus 101 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~l~~~~ 175 (544)
.|++++|.+..++.. .+++|++|++++|.++.++. .+..+++|+.|++++|......+. .+++|+.|+++++.
T Consensus 103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 777777776664432 35667777777777776543 556667777777777654322221 23556666665543
Q ss_pred CCCcCCC--CCCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCCCC---CCCCEEeEecCCCC
Q 009084 176 MLQSLPA--LPLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPELP---LCLKYLYLGDCNML 240 (544)
Q Consensus 176 ~l~~l~~--~~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~~~---~~L~~L~L~~~~~l 240 (544)
++.++. .+++|+.|++++|...+..+.. +++|+.|+|++| .++.+|..+ ++|+.|++++|...
T Consensus 181 -l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 181 -IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred -CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 222222 2566777777777665433322 677888888874 555666544 56777777777665
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=5.8e-18 Score=184.93 Aligned_cols=185 Identities=23% Similarity=0.211 Sum_probs=115.3
Q ss_pred CCCccEEEEeCccCC---CCchhhcCCCCccEEEecCCCCCCCCCC--CCCCCCEEEEecCCCCCcCC----CCCCCccE
Q 009084 119 LSSLTGLHLSGNNFE---SLPASIKQLSRLRSLHLEDCKMLQSLPE--LPLCLKSLELRDCKMLQSLP----ALPLCLES 189 (544)
Q Consensus 119 l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~l~----~~~~~L~~ 189 (544)
+++|+.|++++|.+. ..+.....+.+|+.|++..+......+. ..++|+.+++.++......+ ....+++.
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 567888899998776 3455677888999999888764332222 24677888876665444332 23456777
Q ss_pred EEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCc-CCC---CCCCCCEEeEecCCCCCCCCccc---CCCCeeeeccCC
Q 009084 190 LNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRS-LPE---LPLCLKYLYLGDCNMLRSLPELS---LCLQSLNAWNCN 259 (544)
Q Consensus 190 L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~-lp~---~~~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~ 259 (544)
++++.|......+.. +++|+.|+|++|+.... .|. .+++|+.|+|++|...+..|..+ .+|+.|+++++
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N- 528 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN- 528 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-
Confidence 888887776555543 67788888888765543 333 33677888888886554445443 56777888774
Q ss_pred CCCCCCCC----CCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecC
Q 009084 260 RLQSLPEI----PSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNC 309 (544)
Q Consensus 260 ~L~~l~~l----p~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C 309 (544)
+++.++.. .++|+.|+++++. |+.++...... +...++.|++.+.
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~----l~~~L~~L~L~~N 577 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH----FPSSLAFLNLTQN 577 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTC----CCTTCCEEECTTC
T ss_pred cCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHh----hhCcCCEEEeeCC
Confidence 45555431 2578888888774 44443332221 1123466777543
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.7e-18 Score=172.36 Aligned_cols=125 Identities=19% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCE
Q 009084 22 ENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGL 101 (544)
Q Consensus 22 ~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~ 101 (544)
..+++|+.|++++| .+..+|. +..+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA--IAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCE
T ss_pred HHcCCcCEEEeeCC-CccCchh-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchh--hcCCCCCCE
Confidence 34556666666664 3444442 5566666666666666665555 5666666666666655 444443 556666666
Q ss_pred EEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCC
Q 009084 102 LRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 102 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 154 (544)
|++++|.+..++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc
Confidence 6666666655543 5566666666666666665553 5566666666666653
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=2.1e-18 Score=168.43 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=124.2
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~ 80 (544)
++|+.|+++++.++.++. ++.+++|++|++++|. +..++ .++.+++|++|++++|.++.++.. ++++++|+.|+++
T Consensus 41 ~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCcccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 456667777666666554 6666777777776653 33443 366666777777766666665543 4666677777776
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCKMLQS 158 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~ 158 (544)
+|. +..++...+..+++|++|++++|.+..++.. ++.+++|+.|++++|+++.++.. +..+++|+.|++++|.....
T Consensus 118 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 665 4455544456666677777776666664433 46666677777777666655543 45666666666666653222
Q ss_pred CCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCCCCCccEEEEeCCCCCCcCCCCCCCCC
Q 009084 159 LPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCLESLNLTGCNMLRSLPELPLCLK 230 (544)
Q Consensus 159 lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~~~~L~~L~Ls~c~~l~~lp~~~~~L~ 230 (544)
.+..+ ..+++|+.|++++|+.... +++|+.|+++.|...+.+|..+.++.
T Consensus 197 ~~~~~------------------~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVF------------------DRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTT------------------TTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHH------------------hCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccCcccccC
Confidence 11111 1235677777777765433 45677777777777777777766554
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=9e-18 Score=164.25 Aligned_cols=213 Identities=20% Similarity=0.188 Sum_probs=152.7
Q ss_pred EEEecCCCCcccCcccCCCCCccEEeeecCCCCCccC-cccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCC
Q 009084 6 RIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLP-DNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCK 83 (544)
Q Consensus 6 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 83 (544)
.++..+..++++|..+. ++|++|++++|. +..++ ..+.++++|++|++++|.++.++. .++++++|+.|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 45556667778887553 579999999874 44444 468889999999999999987765 67889999999999987
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCC--CchhhcCCCCccEEEecCCCCCCCCC
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFES--LPASIKQLSRLRSLHLEDCKMLQSLP 160 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--lp~~l~~l~~L~~L~L~~~~~l~~lp 160 (544)
+..++...+.++++|++|++++|.+..++. .++.+++|++|++++|.++. +|..+..+++|+.|++++|......+
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 88 -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred -cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 556665448889999999999999888655 58889999999999998885 67888999999999999886332211
Q ss_pred CCC---CCCCEEEEecCCCCCcCCCCCCCcc-EEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCC----CCCCCC
Q 009084 161 ELP---LCLKSLELRDCKMLQSLPALPLCLE-SLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPE----LPLCLK 230 (544)
Q Consensus 161 ~~~---~~L~~L~l~~~~~l~~l~~~~~~L~-~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~----~~~~L~ 230 (544)
..+ .+|+ .|. .|++++|...+..+.. ..+|+.|+|++|. ++.+|. .+++|+
T Consensus 167 ~~~~~l~~L~------------------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 167 TDLRVLHQMP------------------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp GGGHHHHTCT------------------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCC
T ss_pred HHhhhhhhcc------------------ccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhccccccc
Confidence 111 1111 111 5666666654433333 3468888888743 555553 246788
Q ss_pred EEeEecCCCCC
Q 009084 231 YLYLGDCNMLR 241 (544)
Q Consensus 231 ~L~L~~~~~l~ 241 (544)
.|++++|+...
T Consensus 228 ~L~l~~N~~~c 238 (276)
T 2z62_A 228 KIWLHTNPWDC 238 (276)
T ss_dssp EEECCSSCBCC
T ss_pred EEEccCCcccc
Confidence 88888876554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.8e-19 Score=189.31 Aligned_cols=211 Identities=13% Similarity=0.091 Sum_probs=119.8
Q ss_pred CccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEe
Q 009084 26 GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRIS 105 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~ 105 (544)
+|++|+|++|......|..++.+++|++|+|++|.++.+++ ++.+++|+.|++++|. +..++. .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-----CCCcCEEECc
Confidence 56666666654333334456666666666666666654443 5566666666666654 333332 2556666666
Q ss_pred ccCCCCCChhccCCCCccEEEEeCccCCCC-chhhcCCCCccEEEecCCCCCCCCCC----CCCCCCEEEEecCCCCCcC
Q 009084 106 YSAVMEIPQEIACLSSLTGLHLSGNNFESL-PASIKQLSRLRSLHLEDCKMLQSLPE----LPLCLKSLELRDCKMLQSL 180 (544)
Q Consensus 106 ~~~~~~lp~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~l~~~~~l~~l 180 (544)
+|.+..++.. .+++|+.|++++|.++.+ |..++.+++|+.|++++|......|. .+++|+.|+++++. ++.+
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccc
Confidence 6666554332 345666666666666644 33455566666666666653332221 12455555555443 2222
Q ss_pred CC--CCCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCCCC---CCCCEEeEecCCCC-CCCCccc
Q 009084 181 PA--LPLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPELP---LCLKYLYLGDCNML-RSLPELS 247 (544)
Q Consensus 181 ~~--~~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~~~---~~L~~L~L~~~~~l-~~lp~~~ 247 (544)
+. .+++|+.|+|++|.+.+..+.. +++|+.|+|++ +.+..+|..+ ++|+.|++++|... ..+|..+
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 22 2567888888888776544433 77888888888 4555677554 56788888887765 3444433
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1.1e-17 Score=164.95 Aligned_cols=149 Identities=21% Similarity=0.345 Sum_probs=95.0
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|+++++++++++.+|..+. ++|+.|+|++|......|..+..+++|++|++++|.++.++.. +.+++|+.|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 3566777777777777776543 5677777777644333445567777777777777777766554 566667777776
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCC-hhccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIP-QEIACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCK 154 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~ 154 (544)
+|. +..+|.. +..+++|+.|++++|.+..+| ..++.+++|++|++++|+++.+|.. +..+++|+.|++++|.
T Consensus 86 ~N~-l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 86 HNQ-LQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp SSC-CSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCc-CCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 665 4556654 556666666666666666644 3466666666666666666665543 3556666666666654
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=4.6e-18 Score=166.33 Aligned_cols=197 Identities=22% Similarity=0.233 Sum_probs=150.9
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l 79 (544)
++|++|++++|.++.++. .+.++++|++|++++|......+..+.++++|++|++++|.++.++ ..+.++++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 369999999999998876 5899999999999998544444457899999999999999999776 57899999999999
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCC--CChhccCCCCccEEEEeCccCCCCc-hhhcCCCCcc----EEEecC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVME--IPQEIACLSSLTGLHLSGNNFESLP-ASIKQLSRLR----SLHLED 152 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~----~L~L~~ 152 (544)
++|. +..++...+..+++|++|++++|.+.. +|..++.+++|++|++++|.++.++ ..+..+++|+ .|++++
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 9987 555655448899999999999999987 7899999999999999999999765 3555555555 889988
Q ss_pred CCCCCCCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCC
Q 009084 153 CKMLQSLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNM 218 (544)
Q Consensus 153 ~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~ 218 (544)
|......+..+ ...+|+.|++++|...+..+.. +++|+.|+|++|..
T Consensus 187 n~l~~~~~~~~-------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 187 NPMNFIQPGAF-------------------KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SCCCEECTTSS-------------------CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CcccccCcccc-------------------CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 86322111111 0124666666666654332222 67778888887543
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=7.5e-17 Score=163.40 Aligned_cols=230 Identities=18% Similarity=0.206 Sum_probs=134.1
Q ss_pred cEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCCCCCccChhhhcCCCCCCE-EEEe
Q 009084 28 EVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGL-LRIS 105 (544)
Q Consensus 28 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~-L~l~ 105 (544)
++++.++ ..++.+|..+ .+++++|+|++|+|+.+|. .+.++++|++|+|++|...+.+|..++.++++|++ +.+.
T Consensus 12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEES-TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecC-CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4455554 3566666654 3567777777777777765 46677777777777777666666655667776665 3444
Q ss_pred ccCCCCC-ChhccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCCCCCCCCCCCCCEEEEecCCCCCcCCCC
Q 009084 106 YSAVMEI-PQEIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLELRDCKMLQSLPAL 183 (544)
Q Consensus 106 ~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~ 183 (544)
+|.+..+ |..++.+++|++|++++|+++.+|. .+....++..|++.++..+..++... +...
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~----------------f~~~ 152 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS----------------FVGL 152 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS----------------STTS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc----------------hhhc
Confidence 5666664 4456777777777777777776653 22344455666666554444433210 0011
Q ss_pred CCCccEEEEeCCCCCCCCCCC--CCCccEEEEeCCCCCCcCCCC----CCCCCEEeEecCCCCCCCCc-ccCCCCeeeec
Q 009084 184 PLCLESLNLTGCNMLRSLPAL--PLCLESLNLTGCNMLRSLPEL----PLCLKYLYLGDCNMLRSLPE-LSLCLQSLNAW 256 (544)
Q Consensus 184 ~~~L~~L~Ls~c~~l~~l~~~--~~~L~~L~Ls~c~~l~~lp~~----~~~L~~L~L~~~~~l~~lp~-~~~~L~~L~l~ 256 (544)
...++.|++++|.+....+.. ..+|++|++++++.++.+|.. +++|+.|++++|. ++.+|. .+..|+.|.+.
T Consensus 153 ~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp BSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECT
T ss_pred chhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhc
Confidence 123444555555443222221 345666666666666666642 2566777777663 445543 45667777777
Q ss_pred cCCCCCCCCCCC--CCccEEecc
Q 009084 257 NCNRLQSLPEIP--SCLQELDAS 277 (544)
Q Consensus 257 ~c~~L~~l~~lp--~sL~~L~i~ 277 (544)
++..++.+|.+. ++|+.+++.
T Consensus 232 ~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 232 STYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TCTTCCCCCCTTTCCSCCEEECS
T ss_pred cCCCcCcCCCchhCcChhhCcCC
Confidence 777777777543 456666554
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=4.2e-17 Score=159.00 Aligned_cols=152 Identities=27% Similarity=0.494 Sum_probs=133.0
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcc-cccCccCcEeEeecCCCccCCcc-CCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDN-IGNLKSLGHISAAGSAISQLPSS-VADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~ 78 (544)
++|++|+|++|.++.++. .+.++++|++|+|++| .+..+|.. +.++++|++|++++|.++.+|.. +..+++|+.|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 469999999999998886 5999999999999997 45566654 58899999999999999988864 58899999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~ 155 (544)
+++|. +..++...+..+++|++|++++|.+..+|.. ++.+++|+.|++++|.++.++. .+..+++|+.|++++|..
T Consensus 116 l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 116 LDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 99987 6667766588999999999999999997765 7899999999999999998886 478899999999999863
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=168.31 Aligned_cols=214 Identities=16% Similarity=0.168 Sum_probs=155.0
Q ss_pred CCcEEEecCCCCcc--cCcc--cCCCCCccEEeeecCCCCCccCccc--ccCccCcEeEeecCCCccC-C----ccCCCC
Q 009084 3 HLKRIYLGRTAITE--LPSS--FENLPGLEVLFVEDCSKLDKLPDNI--GNLKSLGHISAAGSAISQL-P----SSVADS 71 (544)
Q Consensus 3 ~L~~L~L~~~~i~~--lp~~--l~~l~~L~~L~L~~c~~l~~lp~~l--~~l~~L~~L~L~~~~l~~l-p----~~~~~l 71 (544)
.++.|.+.+..+.. +... +..+++|++|++++|...+..|..+ ..+++|++|++++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 36777777776651 2211 2235678999999887667777776 8888999999988888742 2 344578
Q ss_pred CCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCC---CC--hhccCCCCccEEEEeCccCCCCchh----hcCC
Q 009084 72 NVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME---IP--QEIACLSSLTGLHLSGNNFESLPAS----IKQL 142 (544)
Q Consensus 72 ~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~---lp--~~l~~l~~L~~L~l~~~~l~~lp~~----l~~l 142 (544)
++|+.|++++|. +..++...+..+++|++|++++|.+.. ++ ..++.+++|++|++++|+++.++.. ++.+
T Consensus 145 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 889999998887 455554447888899999999988654 32 2346788899999999988876652 4677
Q ss_pred CCccEEEecCCCCCCCCCCC------CCCCCEEEEecCCCCCcCCCC-CCCccEEEEeCCCCCC-CCCCCCCCccEEEEe
Q 009084 143 SRLRSLHLEDCKMLQSLPEL------PLCLKSLELRDCKMLQSLPAL-PLCLESLNLTGCNMLR-SLPALPLCLESLNLT 214 (544)
Q Consensus 143 ~~L~~L~L~~~~~l~~lp~~------~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~Ls~c~~l~-~l~~~~~~L~~L~Ls 214 (544)
++|++|+|++|......|.. +++|+.|+++++. ++.+|.. +.+|+.|+|++|.+.+ ..+..+++|+.|+|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 88999999988755543432 2688889987764 4466653 4689999999998876 344458999999999
Q ss_pred CCCC
Q 009084 215 GCNM 218 (544)
Q Consensus 215 ~c~~ 218 (544)
+|..
T Consensus 303 ~N~l 306 (310)
T 4glp_A 303 GNPF 306 (310)
T ss_dssp STTT
T ss_pred CCCC
Confidence 9643
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=166.72 Aligned_cols=211 Identities=18% Similarity=0.165 Sum_probs=140.2
Q ss_pred CCccEEeeecCCCCC----ccCcccccCccCcEeEeecCCCc-cCCccC--CCCCCccEEEEecCCCCCccC---hhhhc
Q 009084 25 PGLEVLFVEDCSKLD----KLPDNIGNLKSLGHISAAGSAIS-QLPSSV--ADSNVLGILDFSSCKGLVSLP---RSLLL 94 (544)
Q Consensus 25 ~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~L~~~~l~-~lp~~~--~~l~~L~~L~l~~c~~l~~lp---~~~~~ 94 (544)
..++.|.+.++.... .++. +..+++|++|++++|.+. ..|..+ +.+++|+.|++++|......+ ...+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 457888888764321 1112 234577999999999998 566666 899999999999998554433 12245
Q ss_pred CCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCC---Cch--hhcCCCCccEEEecCCCCCCCCCC-------
Q 009084 95 GLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFES---LPA--SIKQLSRLRSLHLEDCKMLQSLPE------- 161 (544)
Q Consensus 95 ~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~---lp~--~l~~l~~L~~L~L~~~~~l~~lp~------- 161 (544)
.+++|++|++++|.+..+ +..++.+++|++|++++|++.. ++. .+..+++|++|++++|.. +.++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHh
Confidence 799999999999999885 4678999999999999998763 332 346899999999999974 33332
Q ss_pred CCCCCCEEEEecCCCCCcCCCC------CCCccEEEEeCCCCCCCCCCC-CCCccEEEEeCCCCCC-cCCCCCCCCCEEe
Q 009084 162 LPLCLKSLELRDCKMLQSLPAL------PLCLESLNLTGCNMLRSLPAL-PLCLESLNLTGCNMLR-SLPELPLCLKYLY 233 (544)
Q Consensus 162 ~~~~L~~L~l~~~~~l~~l~~~------~~~L~~L~Ls~c~~l~~l~~~-~~~L~~L~Ls~c~~l~-~lp~~~~~L~~L~ 233 (544)
..++|+.|+++++......|.. +++|++|+|++|.+. .+|.. +++|+.|+|++|...+ ..+..+++|+.|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 2366777777666443332321 145666666666554 34433 4566666666643222 1233445566666
Q ss_pred EecCC
Q 009084 234 LGDCN 238 (544)
Q Consensus 234 L~~~~ 238 (544)
+++|+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 65554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.1e-17 Score=163.37 Aligned_cols=177 Identities=19% Similarity=0.292 Sum_probs=143.2
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEE
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDF 79 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 79 (544)
+++|++|++++|.++.++ .+..+++|++|++++|......+..++.+++|++|++++|.++.++.. ++.+++|+.|++
T Consensus 62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 578999999999999876 589999999999999855444455579999999999999999988765 689999999999
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCCCCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~ 157 (544)
++|. +..++...+..+++|+.|++++|.+..++.. ++.+++|+.|++++|.++.++.. +..+++|+.|++++|+...
T Consensus 141 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 141 AHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 9986 6777776578999999999999999986654 68899999999999999987754 6889999999999997543
Q ss_pred CCCCCCCCCCEEEEecCCCCCcCCCC
Q 009084 158 SLPELPLCLKSLELRDCKMLQSLPAL 183 (544)
Q Consensus 158 ~lp~~~~~L~~L~l~~~~~l~~l~~~ 183 (544)
. +++|+.|.++.+.....+|..
T Consensus 220 ~----~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 220 T----CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp C----TTTTHHHHHHHHHTGGGBBCT
T ss_pred c----CcHHHHHHHHHHhCCCcccCc
Confidence 2 224444444444333344443
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=5.2e-18 Score=169.50 Aligned_cols=210 Identities=15% Similarity=0.199 Sum_probs=169.1
Q ss_pred CCCcEEEecCCCCcccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
++|++|+|++|.++.++ ..++.+++|++|+|++|. +..++. +..+++|++|++++|.++.++. .++|+.|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence 58999999999999876 469999999999999975 444554 8999999999999999998774 3899999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCC-hhccCCCCccEEEEeCccCCCCc-hhh-cCCCCccEEEecCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIP-QEIACLSSLTGLHLSGNNFESLP-ASI-KQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~lp-~~l-~~l~~L~~L~L~~~~~l~ 157 (544)
+|. +..++. ..+++|+.|++++|.+..++ ..++.+++|++|++++|.++.++ ..+ ..+++|+.|++++|.. +
T Consensus 108 ~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~ 182 (317)
T 3o53_A 108 NNN-ISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-Y 182 (317)
T ss_dssp SSC-CSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-C
T ss_pred CCc-cCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-c
Confidence 987 566654 35789999999999999854 46888999999999999999654 344 4789999999999974 3
Q ss_pred CCCCC--CCCCCEEEEecCCCCCcCCCC---CCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCC-CcCCC
Q 009084 158 SLPEL--PLCLKSLELRDCKMLQSLPAL---PLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNML-RSLPE 224 (544)
Q Consensus 158 ~lp~~--~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l-~~lp~ 224 (544)
.++.. +++|+.|+++++. ++.++.. +++|+.|++++|... .+|.. +++|+.|+|++|... ..+|.
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 183 DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp EEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred ccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 44433 6899999998874 4455443 568999999999876 45544 789999999997655 34443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=5.4e-17 Score=159.97 Aligned_cols=156 Identities=26% Similarity=0.372 Sum_probs=136.4
Q ss_pred CCCcEEEecCCCCcccC-cccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELP-SSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
++|++|+|++|.++.++ ..+..+++|+.|+|++| .+..++. .+.+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 47999999999999775 45999999999999997 5666766 388999999999999999999999999999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCKMLQS 158 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~ 158 (544)
+|. +..++...+..+++|++|++++|.+..+|.. +..+++|+.|++++|+++.+|.. +..+++|+.|++++|. ++.
T Consensus 109 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ 186 (290)
T 1p9a_G 109 FNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYT 186 (290)
T ss_dssp SSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred CCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCc
Confidence 987 6777766689999999999999999997654 68899999999999999999875 4779999999999986 344
Q ss_pred CCC
Q 009084 159 LPE 161 (544)
Q Consensus 159 lp~ 161 (544)
+|.
T Consensus 187 ip~ 189 (290)
T 1p9a_G 187 IPK 189 (290)
T ss_dssp CCT
T ss_pred cCh
Confidence 443
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=1e-16 Score=162.44 Aligned_cols=228 Identities=19% Similarity=0.182 Sum_probs=175.7
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCCCc-cCCc-cCCCCCCccEEEEec
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSAIS-QLPS-SVADSNVLGILDFSS 81 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~l~-~lp~-~~~~l~~L~~L~l~~ 81 (544)
++++.++++++++|..+ .+++++|+|++| .++.+|. .|.++++|++|+|++|.+. .+|. .+.++++|+.+.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778888999999866 468999999996 6777775 5889999999999999875 4654 567888888766655
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCc-cCCCCch-hhcCC-CCccEEEecCCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGN-NFESLPA-SIKQL-SRLRSLHLEDCKMLQ 157 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~-~l~~lp~-~l~~l-~~L~~L~L~~~~~l~ 157 (544)
+..+..++...+..+++|++|++++|.+..+|. .+....++..|++.++ .+..++. .+..+ ..++.|++++|. ++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-cc
Confidence 556888877668899999999999999888655 3455667888888764 7777764 34444 468889999886 44
Q ss_pred CCCCC-C--CCCCEEEEecCCCCCcCCCC----CCCccEEEEeCCCCCCCCCC-CCCCccEEEEeCCCCCCcCCC--CCC
Q 009084 158 SLPEL-P--LCLKSLELRDCKMLQSLPAL----PLCLESLNLTGCNMLRSLPA-LPLCLESLNLTGCNMLRSLPE--LPL 227 (544)
Q Consensus 158 ~lp~~-~--~~L~~L~l~~~~~l~~l~~~----~~~L~~L~Ls~c~~l~~l~~-~~~~L~~L~Ls~c~~l~~lp~--~~~ 227 (544)
.++.. + .+|+.|.+.+++.++.+|.. +.+|+.|+|++|++. .+|. .+.+|+.|.+.+++.++.+|. .++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKLV 246 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccCCCcCcCCCchhCc
Confidence 55442 2 46788888888888888853 467899999999764 5554 499999999999999999994 567
Q ss_pred CCCEEeEecC
Q 009084 228 CLKYLYLGDC 237 (544)
Q Consensus 228 ~L~~L~L~~~ 237 (544)
+|+.+++.++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 8888888653
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=9.7e-17 Score=154.64 Aligned_cols=151 Identities=21% Similarity=0.314 Sum_probs=130.4
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEec
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSS 81 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~ 81 (544)
+.++++++++.++.+|..+. ++|+.|+|++|......+..+.++++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999999998765 699999999986656666679999999999999999997765 478999999999999
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKML 156 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l 156 (544)
|. +..++...+..+++|++|++++|.+..++.. ++.+++|+.|++++|+++.+|. .+..+++|+.|+|++|...
T Consensus 93 n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 93 NQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred Cc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 87 6677766588999999999999999987665 6889999999999999998887 5889999999999998643
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=4.8e-19 Score=192.31 Aligned_cols=262 Identities=15% Similarity=-0.010 Sum_probs=129.0
Q ss_pred ccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCC---CccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCc
Q 009084 46 GNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGL---VSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSL 122 (544)
Q Consensus 46 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l---~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L 122 (544)
.++++|++|+++++.+..+|..++++++|+.|+++++... ...+.. +..+++|+.|.++++....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhccccccccCccccchhHHHHHHhhcCCC
Confidence 3444444444444444444444444444444444432211 011111 344455555555554444455555556666
Q ss_pred cEEEEeCccCC--CCchhhcCCCCccEEEecCCCCCCCCC---CCCCCCCEEEEec----------CCCCCcC-----CC
Q 009084 123 TGLHLSGNNFE--SLPASIKQLSRLRSLHLEDCKMLQSLP---ELPLCLKSLELRD----------CKMLQSL-----PA 182 (544)
Q Consensus 123 ~~L~l~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp---~~~~~L~~L~l~~----------~~~l~~l-----~~ 182 (544)
++|++++|.++ .++..+..+++|+.|++.++..-..++ ...++|+.|++.+ |..++.. ..
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 66666666544 222234556666666665321111111 1235677777764 5554421 12
Q ss_pred CCCCccEEEEeCCCCCCCCCC----CCCCccEEEEeC---CCCCCcCCC---------CCCCCCEEeEecCCC-CC----
Q 009084 183 LPLCLESLNLTGCNMLRSLPA----LPLCLESLNLTG---CNMLRSLPE---------LPLCLKYLYLGDCNM-LR---- 241 (544)
Q Consensus 183 ~~~~L~~L~Ls~c~~l~~l~~----~~~~L~~L~Ls~---c~~l~~lp~---------~~~~L~~L~L~~~~~-l~---- 241 (544)
.+++|++|+++.+...+..+. .+++|+.|++++ |+.++..|. .+++|++|++++|.. ++
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 356677777755544332211 166777777773 455655432 256777777776543 22
Q ss_pred -CCCcccCCCCeeeeccCCCCCC--CC---CCCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCCCchhH
Q 009084 242 -SLPELSLCLQSLNAWNCNRLQS--LP---EIPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCLKLNGK 315 (544)
Q Consensus 242 -~lp~~~~~L~~L~l~~c~~L~~--l~---~lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~~L~~~ 315 (544)
.+....++|+.|++.+|. +.. ++ .-.++|++|++++|+ ++........... ..++.|++.+|. ++..
T Consensus 456 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l----~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKL----PSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHC----SSCCEEEEESCB-CCTT
T ss_pred HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhc----CccCeeECcCCc-CCHH
Confidence 112234567777777664 221 11 223578888888887 4321111000001 124677888886 5443
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=4.4e-17 Score=151.05 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=117.7
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc-CCccCCCCCCccEEEEe
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ-LPSSVADSNVLGILDFS 80 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~l~ 80 (544)
++|++|+++++.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .+..++.+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 57888888888888888 5888888999999887 555554 47888889999998888884 67778888888888888
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccC-CCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSA-VMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 154 (544)
+|......+.. +..+++|++|++++|. +..+| .++.+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 121 ~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 88743334444 7788888888888887 76676 6788888888888888888877 77888888888888876
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1e-16 Score=159.36 Aligned_cols=187 Identities=20% Similarity=0.334 Sum_probs=160.9
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|++|+++++.++.++ .+..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+..+++|+.|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 357999999999999988 4889999999999997 5667777 999999999999999999986 68899999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLP 160 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 160 (544)
+|. +..++. +..+++|+.|++++|.+..++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|.. ..++
T Consensus 116 ~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~ 189 (308)
T 1h6u_A 116 STQ-ITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI-SDIS 189 (308)
T ss_dssp TSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCG
T ss_pred CCC-CCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc-CcCh
Confidence 987 666765 8899999999999999998776 8899999999999999999886 89999999999999974 4444
Q ss_pred C--CCCCCCEEEEecCCCCCcCC--CCCCCccEEEEeCCCCC
Q 009084 161 E--LPLCLKSLELRDCKMLQSLP--ALPLCLESLNLTGCNML 198 (544)
Q Consensus 161 ~--~~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~Ls~c~~l 198 (544)
. .+++|+.|+++++. ++.++ ..+++|+.|++++|+..
T Consensus 190 ~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred hhcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCeee
Confidence 3 35799999998874 33343 24678999999999863
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.2e-16 Score=154.06 Aligned_cols=153 Identities=24% Similarity=0.355 Sum_probs=135.4
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l 79 (544)
++|++|+|++|.++.++. .++++++|++|+|++|......|..+..+++|++|++++|.++.+|. .++.+++|+.|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 468999999999997765 48999999999999986555566668999999999999999998875 5689999999999
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~ 155 (544)
++|. +..++...+..+++|++|++++|.+..++. .++.+++|+.|++++|.++.++. .+..+++|+.|++++|+.
T Consensus 115 ~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 115 GGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 9986 677887767899999999999999999776 68999999999999999998876 678899999999999974
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2e-17 Score=175.09 Aligned_cols=181 Identities=20% Similarity=0.155 Sum_probs=123.4
Q ss_pred cCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEE
Q 009084 47 NLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGL 125 (544)
Q Consensus 47 ~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L 125 (544)
.+++|++|+|++|.+..++ ..++.+++|+.|++++|. +...++ +..+++|++|++++|.+..+|. .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 3458999999999999875 589999999999999987 554554 7899999999999999887664 3899999
Q ss_pred EEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCC---CCCCCEEEEecCCCCCcCCC----CCCCccEEEEeCCCCC
Q 009084 126 HLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPEL---PLCLKSLELRDCKMLQSLPA----LPLCLESLNLTGCNML 198 (544)
Q Consensus 126 ~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~Ls~c~~l 198 (544)
++++|.++.++. ..+++|+.|++++|......|.. +++|+.|+++++......|. .+++|+.|+|++|.+.
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999998875 35789999999999754443322 35566666655533322222 2345666666666554
Q ss_pred CCCCCC-CCCccEEEEeCCCCCCcCCCCC---CCCCEEeEecC
Q 009084 199 RSLPAL-PLCLESLNLTGCNMLRSLPELP---LCLKYLYLGDC 237 (544)
Q Consensus 199 ~~l~~~-~~~L~~L~Ls~c~~l~~lp~~~---~~L~~L~L~~~ 237 (544)
+..+.. +++|+.|+|++| .++.+|..+ ++|+.|++++|
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 183 DVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp EEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred cccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC
Confidence 332222 555555555553 333333322 34555555544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.9e-18 Score=173.91 Aligned_cols=237 Identities=19% Similarity=0.162 Sum_probs=144.7
Q ss_pred CcEEEecCCCCcccCcccCCC--CCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc--CCccCCCCCCccEEEE
Q 009084 4 LKRIYLGRTAITELPSSFENL--PGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ--LPSSVADSNVLGILDF 79 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l--~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l 79 (544)
++.|+++++.+. +..+..+ ++++.|++++|......+. +..+++|++|++++|.+.. ++..+..+++|+.|++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 566777766655 3334444 6677777776543333333 5567777777777776652 6666667777777777
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEecc-CCCC--CChhccCCCCccEEEEeCc-cCCC--CchhhcCCC-CccEEEecC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYS-AVME--IPQEIACLSSLTGLHLSGN-NFES--LPASIKQLS-RLRSLHLED 152 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~-~~~~--lp~~l~~l~~L~~L~l~~~-~l~~--lp~~l~~l~-~L~~L~L~~ 152 (544)
++|......+.. +..+++|++|++++| .+.. ++..++.+++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 126 ~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 126 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp TTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 776532233333 566777777777777 4553 5555666777777777777 6663 555566677 777777777
Q ss_pred CC-CCC--CCCC---CCCCCCEEEEecCCCCCc-CC---CCCCCccEEEEeCCCCCCCC----CCCCCCccEEEEeCCCC
Q 009084 153 CK-MLQ--SLPE---LPLCLKSLELRDCKMLQS-LP---ALPLCLESLNLTGCNMLRSL----PALPLCLESLNLTGCNM 218 (544)
Q Consensus 153 ~~-~l~--~lp~---~~~~L~~L~l~~~~~l~~-l~---~~~~~L~~L~Ls~c~~l~~l----~~~~~~L~~L~Ls~c~~ 218 (544)
|. .++ .++. ..++|+.|++++|..++. .+ ..+++|++|++++|...... -..+++|+.|+|++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--
Confidence 64 221 1221 245677777777664332 11 13467888888888532211 112788999999987
Q ss_pred CCcCCCC----C-CCCCEEeEecCCCCCCCCcccCC
Q 009084 219 LRSLPEL----P-LCLKYLYLGDCNMLRSLPELSLC 249 (544)
Q Consensus 219 l~~lp~~----~-~~L~~L~L~~~~~l~~lp~~~~~ 249 (544)
++.. + ..|+.|++++|...+..|.....
T Consensus 283 ---i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 ---VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ---SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred ---cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 3332 1 34777888877777667765543
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.2e-16 Score=157.62 Aligned_cols=168 Identities=23% Similarity=0.347 Sum_probs=110.2
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
++|++|+++++.++.++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++. ++.+++|+.|++++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 456777777777776654 666777777777775 4444554 6777777777777777776654 66777777777777
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPE 161 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 161 (544)
|. +..++. +..+++|+.|++++|.+..+ ..++.+++|+.|++++|.++.++. +..+++|+.|++++|.. +.++.
T Consensus 122 n~-i~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i-~~l~~ 195 (291)
T 1h6t_A 122 NG-ISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDLRA 195 (291)
T ss_dssp SC-CCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBCGG
T ss_pred Cc-CCCChh--hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC-CCChh
Confidence 65 444543 56677777777777776666 456667777777777777776664 66777777777777642 22211
Q ss_pred CCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCC
Q 009084 162 LPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNML 198 (544)
Q Consensus 162 ~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l 198 (544)
-..+++|+.|++++|+..
T Consensus 196 -------------------l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 196 -------------------LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -------------------GTTCTTCSEEEEEEEEEE
T ss_pred -------------------hccCCCCCEEECcCCccc
Confidence 023456788888887653
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=5.3e-16 Score=166.09 Aligned_cols=188 Identities=21% Similarity=0.266 Sum_probs=106.6
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
+|+.|+|++|.++.+|..+ +++|++|+|++| .++.+| ..+++|++|++++|.++.+|. +.. +|+.|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 5566666666666666544 256666666664 344555 335666666666666666665 443 6666666665
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPEL 162 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 162 (544)
. +..+|. .+++|+.|++++|.+..+|. .+++|+.|++++|.++.+|. +. ++|+.|+|++|. ++.+|.+
T Consensus 131 ~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~~ 198 (571)
T 3cvr_A 131 Q-LTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPAV 198 (571)
T ss_dssp C-CSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCCC
T ss_pred c-CCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhhH
Confidence 4 444554 35566666666666665554 35566666666666666655 43 566666666654 3344331
Q ss_pred CCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCC---CCCccEEEEeCCCCCCcCCCCC
Q 009084 163 PLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPAL---PLCLESLNLTGCNMLRSLPELP 226 (544)
Q Consensus 163 ~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~---~~~L~~L~Ls~c~~l~~lp~~~ 226 (544)
+.+| ......|+.|+|++|.+. .+|.. +++|+.|+|++|...+.+|..+
T Consensus 199 ~~~L--------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 199 PVRN--------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp C----------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HHhh--------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 1111 001112377888877664 45553 7788888888876666665443
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=6.9e-16 Score=146.52 Aligned_cols=149 Identities=21% Similarity=0.314 Sum_probs=128.6
Q ss_pred CcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEEecC
Q 009084 4 LKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDFSSC 82 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~c 82 (544)
.+.++.+++.++.+|..+. ++|++|+|++|......|..+..+++|++|+|++|.+..+|.. +..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3578888899999997654 8999999999866666677889999999999999999988864 588999999999998
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~ 155 (544)
. +..++...+..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++. .+..+++|+.|++.+|+.
T Consensus 99 ~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 Q-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred c-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6 67777766788999999999999999999999999999999999999998875 478899999999999874
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.7e-18 Score=172.76 Aligned_cols=229 Identities=23% Similarity=0.155 Sum_probs=162.4
Q ss_pred CCccEEeeecCCCCCccCcccccC--ccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCc-cChhhhcCCCCCCE
Q 009084 25 PGLEVLFVEDCSKLDKLPDNIGNL--KSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVS-LPRSLLLGLSSLGL 101 (544)
Q Consensus 25 ~~L~~L~L~~c~~l~~lp~~l~~l--~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~l~~L~~ 101 (544)
..++.|+++++... |..+..+ ++++.|+++++.+...+..+..+++|+.|++++|..... ++.. +..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCE
Confidence 34788898876432 4556666 889999999988887777788889999999998873222 4444 788899999
Q ss_pred EEEeccCCCC-CChhccCCCCccEEEEeCc-cCC--CCchhhcCCCCccEEEecCCCCCCC--CCC---CCC-CCCEEEE
Q 009084 102 LRISYSAVME-IPQEIACLSSLTGLHLSGN-NFE--SLPASIKQLSRLRSLHLEDCKMLQS--LPE---LPL-CLKSLEL 171 (544)
Q Consensus 102 L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~-~l~--~lp~~l~~l~~L~~L~L~~~~~l~~--lp~---~~~-~L~~L~l 171 (544)
|++++|.+.. .+..++.+++|++|++++| .++ .++..+.++++|++|++++|..++. ++. ..+ +|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 9999998775 7777888999999999998 677 4676788889999999999844443 222 235 8999999
Q ss_pred ecCC-CCC--cCC---CCCCCccEEEEeCCCC-CCCCCCC---CCCccEEEEeCCCCCCcC----CCCCCCCCEEeEecC
Q 009084 172 RDCK-MLQ--SLP---ALPLCLESLNLTGCNM-LRSLPAL---PLCLESLNLTGCNMLRSL----PELPLCLKYLYLGDC 237 (544)
Q Consensus 172 ~~~~-~l~--~l~---~~~~~L~~L~Ls~c~~-l~~l~~~---~~~L~~L~Ls~c~~l~~l----p~~~~~L~~L~L~~~ 237 (544)
++|. .++ .++ ..+++|+.|++++|.. ....+.. +++|++|+|++|..+... -..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8885 332 122 2467899999999984 3333322 788999999998643321 124678999999988
Q ss_pred CCCCC--CCcccCCCCeeeeccCC
Q 009084 238 NMLRS--LPELSLCLQSLNAWNCN 259 (544)
Q Consensus 238 ~~l~~--lp~~~~~L~~L~l~~c~ 259 (544)
+.. +......++.|++.++.
T Consensus 283 --i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 283 --VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp --SCTTCHHHHHHHSTTSEESCCC
T ss_pred --cCHHHHHHHHhhCcceEEeccc
Confidence 221 12222447788875443
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=9.5e-19 Score=183.98 Aligned_cols=304 Identities=20% Similarity=0.227 Sum_probs=207.7
Q ss_pred CCCCcEEEecCCCCc-----ccCcccCCCCCccEEeeecCCCCCccCccc-ccCc----cCcEeEeecCCCc-----cCC
Q 009084 1 MEHLKRIYLGRTAIT-----ELPSSFENLPGLEVLFVEDCSKLDKLPDNI-GNLK----SLGHISAAGSAIS-----QLP 65 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l-~~l~----~L~~L~L~~~~l~-----~lp 65 (544)
+++|++|+|+++.++ .++..+..+++|++|+|++|......+..+ ..++ +|++|++++|.++ .++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 468999999999988 457778889999999999975433223222 3354 7999999999988 468
Q ss_pred ccCCCCCCccEEEEecCCCCCcc-----ChhhhcCCCCCCEEEEeccCCCC-----CChhccCCCCccEEEEeCccCCCC
Q 009084 66 SSVADSNVLGILDFSSCKGLVSL-----PRSLLLGLSSLGLLRISYSAVME-----IPQEIACLSSLTGLHLSGNNFESL 135 (544)
Q Consensus 66 ~~~~~l~~L~~L~l~~c~~l~~l-----p~~~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~l 135 (544)
..+..+++|+.|++++|. +... ........++|++|++++|.+.. ++..+..+++|++|++++|.+...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 889999999999999987 4322 11212335689999999998875 466677889999999999987632
Q ss_pred -chhh----c-CCCCccEEEecCCCCCCC----CCC---CCCCCCEEEEecCCCCCcC---------CCCCCCccEEEEe
Q 009084 136 -PASI----K-QLSRLRSLHLEDCKMLQS----LPE---LPLCLKSLELRDCKMLQSL---------PALPLCLESLNLT 193 (544)
Q Consensus 136 -p~~l----~-~l~~L~~L~L~~~~~l~~----lp~---~~~~L~~L~l~~~~~l~~l---------~~~~~~L~~L~Ls 193 (544)
+..+ . ..++|+.|++++|..... ++. ..++|+.|+++++. ++.. ....++|++|+++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECc
Confidence 1122 1 367999999999964332 232 24789999998874 3221 1235789999999
Q ss_pred CCCCCCC----CCCC---CCCccEEEEeCCCCCC----cC----CCCCCCCCEEeEecCCCCCC----CCcc---cCCCC
Q 009084 194 GCNMLRS----LPAL---PLCLESLNLTGCNMLR----SL----PELPLCLKYLYLGDCNMLRS----LPEL---SLCLQ 251 (544)
Q Consensus 194 ~c~~l~~----l~~~---~~~L~~L~Ls~c~~l~----~l----p~~~~~L~~L~L~~~~~l~~----lp~~---~~~L~ 251 (544)
+|..... ++.. +++|++|+|++|..-. .+ ....++|+.|++++|..... ++.. .+.|+
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 344 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence 9976542 3333 7899999999964321 11 22336899999999975433 3332 26789
Q ss_pred eeeeccCCCCCCCC---------CCCCCccEEeccCCCCCC-----CCCccccccCCCCCCCCCeEEEEecCCCchhH
Q 009084 252 SLNAWNCNRLQSLP---------EIPSCLQELDASVLETLS-----KPSPDLLQWAPGSLESQPIYFGFTNCLKLNGK 315 (544)
Q Consensus 252 ~L~l~~c~~L~~l~---------~lp~sL~~L~i~~C~~L~-----~~~~~~~~~~~~~~~~~~~~l~~~~C~~L~~~ 315 (544)
.|++.++. +...+ ...++|++|++++|. ++ .++...... ..++.+++.+|. +...
T Consensus 345 ~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~------~~L~~L~l~~N~-i~~~ 413 (461)
T 1z7x_W 345 ELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLAN------HSLRELDLSNNC-LGDA 413 (461)
T ss_dssp EEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHC------CCCCEEECCSSS-CCHH
T ss_pred EEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhC------CCccEEECCCCC-CCHH
Confidence 99998873 33221 114589999999984 44 232222111 234788988884 4443
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.1e-18 Score=183.54 Aligned_cols=276 Identities=19% Similarity=0.227 Sum_probs=196.6
Q ss_pred CCCCcEEEecCCCCcc--cCcccCCCC----CccEEeeecCCCCC----ccCcccccCccCcEeEeecCCCccC-----C
Q 009084 1 MEHLKRIYLGRTAITE--LPSSFENLP----GLEVLFVEDCSKLD----KLPDNIGNLKSLGHISAAGSAISQL-----P 65 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~--lp~~l~~l~----~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~L~~~~l~~l-----p 65 (544)
+++|++|+|++|.++. +......++ +|++|+|++|.... .+|..+..+++|++|++++|.+... .
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 4789999999999974 222233455 79999999986442 5688899999999999999998732 2
Q ss_pred cc-CCCCCCccEEEEecCCCCCc-----cChhhhcCCCCCCEEEEeccCCCC-CChhc----c-CCCCccEEEEeCccCC
Q 009084 66 SS-VADSNVLGILDFSSCKGLVS-----LPRSLLLGLSSLGLLRISYSAVME-IPQEI----A-CLSSLTGLHLSGNNFE 133 (544)
Q Consensus 66 ~~-~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l----~-~l~~L~~L~l~~~~l~ 133 (544)
.. ....++|+.|++++|. +.. ++.. +..+++|++|++++|.+.. .+..+ . ..++|++|++++|.++
T Consensus 135 ~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCS-LSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHTSTTCCCCEEECTTSC-CBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHhcCCCcceEEECCCCC-CCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 22 2346789999999987 443 2333 6678999999999999765 22222 2 3679999999999998
Q ss_pred C-----CchhhcCCCCccEEEecCCCCCCC--------CCCCCCCCCEEEEecCCCCCc-----CCC---CCCCccEEEE
Q 009084 134 S-----LPASIKQLSRLRSLHLEDCKMLQS--------LPELPLCLKSLELRDCKMLQS-----LPA---LPLCLESLNL 192 (544)
Q Consensus 134 ~-----lp~~l~~l~~L~~L~L~~~~~l~~--------lp~~~~~L~~L~l~~~~~l~~-----l~~---~~~~L~~L~L 192 (544)
. ++..+..+++|++|++++|..... +....++|+.|++++| .++. ++. ..++|++|++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEEC
Confidence 6 577788899999999999963221 1123579999999988 4443 333 2578999999
Q ss_pred eCCCCCCCCC--------CCCCCccEEEEeCCCCCCc----CCC---CCCCCCEEeEecCCCCCCCC----c----ccCC
Q 009084 193 TGCNMLRSLP--------ALPLCLESLNLTGCNMLRS----LPE---LPLCLKYLYLGDCNMLRSLP----E----LSLC 249 (544)
Q Consensus 193 s~c~~l~~l~--------~~~~~L~~L~Ls~c~~l~~----lp~---~~~~L~~L~L~~~~~l~~lp----~----~~~~ 249 (544)
++|......+ ...++|++|+|++|..... ++. ..++|+.|++++|......+ . ..+.
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 9997643211 1136999999999764332 333 24789999999995432211 1 1358
Q ss_pred CCeeeeccCCCCC-----CCCC---CCCCccEEeccCCC
Q 009084 250 LQSLNAWNCNRLQ-----SLPE---IPSCLQELDASVLE 280 (544)
Q Consensus 250 L~~L~l~~c~~L~-----~l~~---lp~sL~~L~i~~C~ 280 (544)
|+.|++.+|. +. .++. -.++|++|++++|+
T Consensus 372 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 372 LRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred eEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 9999999984 44 3442 13689999999984
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=5.3e-16 Score=144.91 Aligned_cols=171 Identities=20% Similarity=0.234 Sum_probs=132.9
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEEecCC
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDFSSCK 83 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~c~ 83 (544)
+.++.+++.++.+|..+ .++|++|++++|......+..++.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56788888899998655 56999999999754433344578999999999999999988765 5789999999999987
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCCCCCCCCC
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCKMLQSLPE 161 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~ 161 (544)
+..++...+..+++|++|++++|.+..++.. ++.+++|+.|++++|.++.++.. +..+++|+.|++++|.....
T Consensus 88 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 88 -LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred -CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 6677776578899999999999999886654 78899999999999999988765 68899999999999864332
Q ss_pred CCCCCCEEEEecCCCCCcCCC
Q 009084 162 LPLCLKSLELRDCKMLQSLPA 182 (544)
Q Consensus 162 ~~~~L~~L~l~~~~~l~~l~~ 182 (544)
+++|+.|.++.+.....+|.
T Consensus 164 -~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 164 -CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -TTTTHHHHHHHHHCTTTBBC
T ss_pred -CCCHHHHHHHHHhCCceeec
Confidence 23444444444433334443
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1e-15 Score=144.34 Aligned_cols=147 Identities=22% Similarity=0.366 Sum_probs=127.4
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccC-cccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecC
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLP-DNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSC 82 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c 82 (544)
+.++++++.++.+|..+. ++|+.|++++|. +..+| ..+..+++|++|+|++|.++.+ |..+.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578899999999998664 789999999974 45554 4689999999999999999977 778999999999999998
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCC
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~ 155 (544)
. +..+|...+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|+.
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred c-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 7 7788887678999999999999999985 5678899999999999999998876 478899999999999863
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=6.4e-16 Score=167.14 Aligned_cols=144 Identities=23% Similarity=0.380 Sum_probs=103.2
Q ss_pred CCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 2 EHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
++|+.|+++++.+..++. ++.+++|+.|+|++| .+..++. +..+++|++|+|++|.+..+| .+..+++|+.|+|++
T Consensus 43 ~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 567777777777777764 777777777777776 4445554 677777777777777777765 567777777777777
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 154 (544)
|. +..++. +..+++|+.|+|++|.+..+ ..++.+++|+.|+|++|.++.++. +..+++|+.|+|++|.
T Consensus 119 N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 119 NG-ISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp SC-CCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CC-CCCCcc--ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 66 445544 66777777777777777766 456777777777777777776665 7777777777777774
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1e-15 Score=148.47 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=130.4
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecC
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSC 82 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c 82 (544)
+++.++++++.++.++ .+..+++|+.|++++| .+..+| .++.+++|++|++++|.++.++. ++.+++|+.|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 4556677888888777 4778899999999987 567777 58889999999999999998887 888999999999998
Q ss_pred CCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCC-
Q 009084 83 KGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPE- 161 (544)
Q Consensus 83 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~- 161 (544)
. +..++. +.. ++|+.|++++|.+..++ .++.+++|+.|++++|+++.++ .+..+++|+.|++++|.... ++.
T Consensus 96 ~-l~~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~-~~~l 168 (263)
T 1xeu_A 96 R-LKNLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN-TGGL 168 (263)
T ss_dssp C-CSCCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB-CTTS
T ss_pred c-cCCcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc-hHHh
Confidence 6 666776 334 88999999999888875 5888999999999999998887 68889999999999886433 332
Q ss_pred -CCCCCCEEEEecCC
Q 009084 162 -LPLCLKSLELRDCK 175 (544)
Q Consensus 162 -~~~~L~~L~l~~~~ 175 (544)
..++|+.|+++++.
T Consensus 169 ~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEeCCCCc
Confidence 24688888887764
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=8.6e-18 Score=172.69 Aligned_cols=226 Identities=16% Similarity=0.140 Sum_probs=119.3
Q ss_pred cCcccCCCCCccEEeeecCCCCCc----cCcccccCccCcEeEeecCCCc----cCCccC-------CCCCCccEEEEec
Q 009084 17 LPSSFENLPGLEVLFVEDCSKLDK----LPDNIGNLKSLGHISAAGSAIS----QLPSSV-------ADSNVLGILDFSS 81 (544)
Q Consensus 17 lp~~l~~l~~L~~L~L~~c~~l~~----lp~~l~~l~~L~~L~L~~~~l~----~lp~~~-------~~l~~L~~L~l~~ 81 (544)
++..+..+++|+.|+|++|..... ++..+..+++|++|+|+++.+. .+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 444455556666666666533222 2223445566666666554333 222222 4556666666666
Q ss_pred CCCCC----ccChhhhcCCCCCCEEEEeccCCCC-----CChhccCC---------CCccEEEEeCccCC--CCc---hh
Q 009084 82 CKGLV----SLPRSLLLGLSSLGLLRISYSAVME-----IPQEIACL---------SSLTGLHLSGNNFE--SLP---AS 138 (544)
Q Consensus 82 c~~l~----~lp~~~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l---------~~L~~L~l~~~~l~--~lp---~~ 138 (544)
|.... .++.. +..+++|++|++++|.+.. ++..+..+ ++|++|++++|.++ .++ ..
T Consensus 104 n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 55222 13333 4555666666666665542 22223233 56666666666554 233 24
Q ss_pred hcCCCCccEEEecCCCCCC-----CCC---CCCCCCCEEEEecCCCC----CcCC---CCCCCccEEEEeCCCCCCC---
Q 009084 139 IKQLSRLRSLHLEDCKMLQ-----SLP---ELPLCLKSLELRDCKML----QSLP---ALPLCLESLNLTGCNMLRS--- 200 (544)
Q Consensus 139 l~~l~~L~~L~L~~~~~l~-----~lp---~~~~~L~~L~l~~~~~l----~~l~---~~~~~L~~L~Ls~c~~l~~--- 200 (544)
+..+++|+.|++++|.... .++ ...++|+.|++++|..- ..++ ...++|+.|+|++|.....
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 4455666666666654220 111 12345666666555421 2222 2345677888888876543
Q ss_pred -CCCC-----CCCccEEEEeCCCCCC----cCCCC----CCCCCEEeEecCCCCCCC
Q 009084 201 -LPAL-----PLCLESLNLTGCNMLR----SLPEL----PLCLKYLYLGDCNMLRSL 243 (544)
Q Consensus 201 -l~~~-----~~~L~~L~Ls~c~~l~----~lp~~----~~~L~~L~L~~~~~l~~l 243 (544)
++.. +++|+.|+|++|.... .+|.. +++|+.|++++|......
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 2221 6788888888855433 26643 488999999988765544
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=2.7e-15 Score=141.50 Aligned_cols=147 Identities=17% Similarity=0.250 Sum_probs=127.1
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCcc-C-cccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEec
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKL-P-DNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSS 81 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~l-p-~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~ 81 (544)
++++++++.++.+|..+ ...+++|+|++|. +..+ | ..+..+++|++|+|++|.++.++. .++++++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999999999865 3467899999974 5555 3 347899999999999999998876 789999999999999
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCC-chhhcCCCCccEEEecCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESL-PASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~ 155 (544)
|. +..++...+..+++|++|++++|.+..+ |..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+.
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred Cc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 87 6677776688999999999999999985 67799999999999999999987 67889999999999999864
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.6e-15 Score=149.43 Aligned_cols=146 Identities=24% Similarity=0.382 Sum_probs=131.4
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
+++|++|++++|.++.++. +..+++|++|++++| .+..+|. +..+++|++|++++|.+..++ .+..+++|+.|+++
T Consensus 67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG 142 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECC
T ss_pred CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEcc
Confidence 5789999999999999887 999999999999997 5666766 899999999999999999884 68899999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 155 (544)
+|. +..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+.
T Consensus 143 ~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 143 NNK-ITDITV--LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEE
T ss_pred CCc-CCcchh--hccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcc
Confidence 987 666643 8899999999999999999776 899999999999999999987 589999999999999863
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=2.2e-17 Score=179.23 Aligned_cols=125 Identities=17% Similarity=0.225 Sum_probs=77.3
Q ss_pred CCCCcEEEecCCCCcc-cCcccC-CCCCccEEeeecCCCCCc--cCcccccCccCcEeEeecCCCcc-----CCccCCCC
Q 009084 1 MEHLKRIYLGRTAITE-LPSSFE-NLPGLEVLFVEDCSKLDK--LPDNIGNLKSLGHISAAGSAISQ-----LPSSVADS 71 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~-lp~~l~-~l~~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~L~~~~l~~-----lp~~~~~l 71 (544)
+++|++|+|+++.++. .+..+. .+++|++|+|++|..++. ++..+.++++|++|++++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 3577888888877662 233343 578888888888865543 55545578888888888777553 33344467
Q ss_pred CCccEEEEecCCCCCccChh----hhcCCCCCCEEEEeccC-CCCCChhccCCCCccEEEE
Q 009084 72 NVLGILDFSSCKGLVSLPRS----LLLGLSSLGLLRISYSA-VMEIPQEIACLSSLTGLHL 127 (544)
Q Consensus 72 ~~L~~L~l~~c~~l~~lp~~----~~~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l 127 (544)
++|+.|++++|. ..+... ....+++|+.|++++|. +..++..+..+++|+.|++
T Consensus 184 ~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 184 TSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred CcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 788888888775 222211 13446788888888772 2224444444455555543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.7e-15 Score=141.39 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=132.8
Q ss_pred CCCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCCCccCCcc-CCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~ 78 (544)
++|++|++++|.++.++.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|.++.+|.. ++.+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 5799999999999988865 7899999999999974 555554 478999999999999999988865 68999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
+++|. +..++...+..+++|+.|++++|.+..++.. +..+++|+.|++++|.+. +.+++|+.|++..|...+
T Consensus 107 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCc
Confidence 99987 6677776578999999999999999987665 788999999999999764 345689999999988777
Q ss_pred CCCCCCCCC
Q 009084 158 SLPELPLCL 166 (544)
Q Consensus 158 ~lp~~~~~L 166 (544)
.+|.....+
T Consensus 180 ~ip~~~~~l 188 (208)
T 2o6s_A 180 VVRNSAGSV 188 (208)
T ss_dssp TBBCTTSSB
T ss_pred eeeccCccc
Confidence 777654433
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=6.6e-15 Score=157.64 Aligned_cols=182 Identities=26% Similarity=0.375 Sum_probs=100.5
Q ss_pred cCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeC
Q 009084 50 SLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSG 129 (544)
Q Consensus 50 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 129 (544)
+|+.|++++|.++.+|..+. ++|+.|++++|. +..+| . .+++|+.|++++|.+..+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP-E---LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC-C---CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc-c---ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 45555555555554444332 445555555543 33444 1 24455555555555544444 332 555555555
Q ss_pred ccCCCCchhhcCCCCccEEEecCCCCCCCCCCCCCCCCEEEEecCCCCCcCCCCCCCccEEEEeCCCCCCCCCCCCCCc-
Q 009084 130 NNFESLPASIKQLSRLRSLHLEDCKMLQSLPELPLCLKSLELRDCKMLQSLPALPLCLESLNLTGCNMLRSLPALPLCL- 208 (544)
Q Consensus 130 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~l~~~~~~L- 208 (544)
|.++.+|. .+++|+.|++++|. ++.+|..+++|+.|++++|. ++.+|....+|+.|+|++|.+. .+|....+|
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~-~lp~~~~~L~ 203 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLE-SLPAVPVRNH 203 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCS-SCCCCC----
T ss_pred CcCCCCCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCC-chhhHHHhhh
Confidence 55555543 34555555555544 22344444455555554442 3334442356777788777654 555443466
Q ss_pred ------cEEEEeCCCCCCcCCCC---CCCCCEEeEecCCCCCCCCcccC
Q 009084 209 ------ESLNLTGCNMLRSLPEL---PLCLKYLYLGDCNMLRSLPELSL 248 (544)
Q Consensus 209 ------~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~~l~~lp~~~~ 248 (544)
+.|+|++ +.++.+|.. +++|+.|+|++|...+.+|..+.
T Consensus 204 ~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 204 HSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp ----CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred cccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 9999999 577788864 47899999999988777666543
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=8.8e-16 Score=149.02 Aligned_cols=163 Identities=19% Similarity=0.209 Sum_probs=83.7
Q ss_pred CCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEE
Q 009084 24 LPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLR 103 (544)
Q Consensus 24 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~ 103 (544)
+.++..++++++ .+..++ .+..+++|++|++++|.++.++ .++.+++|+.|++++|. +..++. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEE
Confidence 444555555553 334444 2455556666666555555555 45555666666665554 444444 45555666666
Q ss_pred EeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCCCCC--CCCCCCEEEEecCCCCCcCC
Q 009084 104 ISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQSLPE--LPLCLKSLELRDCKMLQSLP 181 (544)
Q Consensus 104 l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~l~ 181 (544)
+++|.+..+|.... ++|+.|++++|+++.++ .+..+++|+.|++++|. ++.++. .+++|+.|+++++.. +.++
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i-~~~~ 166 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEI-TNTG 166 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCC-CBCT
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcC-cchH
Confidence 66665555543222 55666666666555554 35555666666665554 223332 134555565554422 2221
Q ss_pred --CCCCCccEEEEeCCCC
Q 009084 182 --ALPLCLESLNLTGCNM 197 (544)
Q Consensus 182 --~~~~~L~~L~Ls~c~~ 197 (544)
..+++|+.|++++|+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TSTTCCCCCEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCcc
Confidence 1234555566655544
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=5.9e-16 Score=167.95 Aligned_cols=279 Identities=14% Similarity=0.061 Sum_probs=201.9
Q ss_pred CCCCcEEEecCCCCc-----ccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCC----ccCCccCCCC
Q 009084 1 MEHLKRIYLGRTAIT-----ELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAI----SQLPSSVADS 71 (544)
Q Consensus 1 l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l----~~lp~~~~~l 71 (544)
+++|++|+++++.++ .++..+.++++|+.|++++|. +..+|..+..+++|++|+++.... ...+..++.+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 478999999999886 445556789999999999974 556888899999999999974322 2455677889
Q ss_pred CCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCC--CChhccCCCCccEEEEeCccCC--CCchhhcCCCCccE
Q 009084 72 NVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVME--IPQEIACLSSLTGLHLSGNNFE--SLPASIKQLSRLRS 147 (544)
Q Consensus 72 ~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~ 147 (544)
++|+.|++.++. ...+|.. +..+++|++|++++|.+.. ++..++.+++|++|++++ .+. .++.....+++|++
T Consensus 270 ~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 270 RKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp TTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCE
T ss_pred ccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCE
Confidence 999999998853 4556664 7788999999999999654 445578899999999994 333 44445567899999
Q ss_pred EEecC----------CCCCCCC-----CCCCCCCCEEEEecCCCCCc-----CCCCCCCccEEEEeC---CCCCCCCCCC
Q 009084 148 LHLED----------CKMLQSL-----PELPLCLKSLELRDCKMLQS-----LPALPLCLESLNLTG---CNMLRSLPAL 204 (544)
Q Consensus 148 L~L~~----------~~~l~~l-----p~~~~~L~~L~l~~~~~l~~-----l~~~~~~L~~L~Ls~---c~~l~~l~~~ 204 (544)
|++++ |..++.. ....++|++|++ .|..++. +....++|+.|++++ |+.++..|..
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 99995 6554421 123579999999 4555542 222367899999984 4455554321
Q ss_pred ---------CCCccEEEEeCCCC-CC-----cCCCCCCCCCEEeEecCCCCC-CCC---cccCCCCeeeeccCCCCCC--
Q 009084 205 ---------PLCLESLNLTGCNM-LR-----SLPELPLCLKYLYLGDCNMLR-SLP---ELSLCLQSLNAWNCNRLQS-- 263 (544)
Q Consensus 205 ---------~~~L~~L~Ls~c~~-l~-----~lp~~~~~L~~L~L~~~~~l~-~lp---~~~~~L~~L~l~~c~~L~~-- 263 (544)
+++|++|+|+.|.. +. .+...+++|+.|+|++|.... .++ ...++|+.|++.+|+ +..
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHH
Confidence 89999999987653 22 223456889999999987432 222 334779999999998 432
Q ss_pred CCC---CCCCccEEeccCCCCCCCCC
Q 009084 264 LPE---IPSCLQELDASVLETLSKPS 286 (544)
Q Consensus 264 l~~---lp~sL~~L~i~~C~~L~~~~ 286 (544)
++. -.++|++|++++|. ++...
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred HHHHHHhcCccCeeECcCCc-CCHHH
Confidence 222 24689999999998 66543
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=9e-15 Score=158.17 Aligned_cols=148 Identities=24% Similarity=0.390 Sum_probs=132.5
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEe
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFS 80 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 80 (544)
|++|+.|+|++|.+..++. +..+++|+.|+|++| .+..+| .+..+++|++|+|++|.+..++ .+..+++|+.|+|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG 139 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECC
T ss_pred CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECC
Confidence 5789999999999999887 899999999999997 566676 4899999999999999999875 58899999999999
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQ 157 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 157 (544)
+|. +..++. +..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++.++ .+..+++|+.|+|++|....
T Consensus 140 ~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 140 NNK-ITDITV--LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSC-CCCCGG--GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCc-cCCchh--hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 987 566643 8899999999999999998766 899999999999999999986 68999999999999997543
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=7.3e-15 Score=149.37 Aligned_cols=166 Identities=21% Similarity=0.275 Sum_probs=131.9
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccC-cccc-cCccCcEeEeecCCCccCCc-cCCCCCCccEEEEec
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLP-DNIG-NLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSS 81 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~l~-~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~ 81 (544)
+.++++++.++.+|..+. +.++.|+|++|. +..++ ..+. ++++|++|+|++|.++.++. .+.++++|+.|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578899999999997653 568999999974 55554 4455 89999999999999998874 588999999999999
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCCchhh----cCCCCccEEEecCCCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESLPASI----KQLSRLRSLHLEDCKML 156 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~lp~~l----~~l~~L~~L~L~~~~~l 156 (544)
|. +..++...+..+++|+.|+|++|.+..+ +..+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|. +
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l 175 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-L 175 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-C
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-C
Confidence 87 6777776688999999999999999884 667899999999999999999998765 578999999999986 4
Q ss_pred CCCCC-C---CCC--CCEEEEecCC
Q 009084 157 QSLPE-L---PLC--LKSLELRDCK 175 (544)
Q Consensus 157 ~~lp~-~---~~~--L~~L~l~~~~ 175 (544)
+.+|. . .+. ++.|++.+++
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CccCHHHhhhccHhhcceEEecCCC
Confidence 44442 1 122 3667776653
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=4.3e-15 Score=133.72 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCCCCccEEeeecCCCC-CccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCC
Q 009084 22 ENLPGLEVLFVEDCSKL-DKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLG 100 (544)
Q Consensus 22 ~~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~ 100 (544)
...++|++|++++|... ..+|..+..+++|++|++++|.++.+ ..++.+++|+.|++++|.....+|.. +..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCC
Confidence 34578999999997643 37888788899999999999998888 77888999999999998844446654 66799999
Q ss_pred EEEEeccCCCCCC--hhccCCCCccEEEEeCccCCCCch----hhcCCCCccEEEecCCCC
Q 009084 101 LLRISYSAVMEIP--QEIACLSSLTGLHLSGNNFESLPA----SIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 101 ~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~L~~~~~ 155 (544)
.|++++|.+..++ ..++.+++|+.|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999998876 678889999999999999998886 788899999999998863
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=5e-16 Score=158.08 Aligned_cols=234 Identities=16% Similarity=0.134 Sum_probs=146.5
Q ss_pred EEEecCCCCcc-cCcccCCCCCccEEeeecCCCCCccC-----cccccCc-cCcEeEeecCCCccC-CccCCCC-----C
Q 009084 6 RIYLGRTAITE-LPSSFENLPGLEVLFVEDCSKLDKLP-----DNIGNLK-SLGHISAAGSAISQL-PSSVADS-----N 72 (544)
Q Consensus 6 ~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~c~~l~~lp-----~~l~~l~-~L~~L~L~~~~l~~l-p~~~~~l-----~ 72 (544)
.+.++.+.++. +|..+...++|++|+|++|. ++..+ ..+..++ +|++|+|++|.+... +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677777774 44445555568888888864 44443 4566777 788888888887754 3333332 7
Q ss_pred CccEEEEecCCCCCccChhh----hcCC-CCCCEEEEeccCCCCCCh-----hccC-CCCccEEEEeCccCC-----CCc
Q 009084 73 VLGILDFSSCKGLVSLPRSL----LLGL-SSLGLLRISYSAVMEIPQ-----EIAC-LSSLTGLHLSGNNFE-----SLP 136 (544)
Q Consensus 73 ~L~~L~l~~c~~l~~lp~~~----~~~l-~~L~~L~l~~~~~~~lp~-----~l~~-l~~L~~L~l~~~~l~-----~lp 136 (544)
+|+.|++++|. +...+... +..+ ++|++|++++|.+...+. .+.. .++|++|++++|.++ .++
T Consensus 81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 88888888876 44333321 3334 788888888888766332 2334 358888888888777 344
Q ss_pred hhhcCCC-CccEEEecCCCCCCCCC--------CCCCCCCEEEEecCCCCCc-----CCC----CCCCccEEEEeCCCCC
Q 009084 137 ASIKQLS-RLRSLHLEDCKMLQSLP--------ELPLCLKSLELRDCKMLQS-----LPA----LPLCLESLNLTGCNML 198 (544)
Q Consensus 137 ~~l~~l~-~L~~L~L~~~~~l~~lp--------~~~~~L~~L~l~~~~~l~~-----l~~----~~~~L~~L~Ls~c~~l 198 (544)
..+..++ +|++|+|++|......+ ..+.+|+.|++++|. ++. ++. ...+|+.|+|++|...
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 4555555 78888888876432221 122578888887764 332 222 1357899999998775
Q ss_pred CCCC-------CCCCCccEEEEeCCCC-------CCcCCC---CCCCCCEEeEecCCCCCC
Q 009084 199 RSLP-------ALPLCLESLNLTGCNM-------LRSLPE---LPLCLKYLYLGDCNMLRS 242 (544)
Q Consensus 199 ~~l~-------~~~~~L~~L~Ls~c~~-------l~~lp~---~~~~L~~L~L~~~~~l~~ 242 (544)
...+ ..+++|+.|+|++|.. +..++. .+++|+.|++++|..-..
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5322 2378899999999651 122222 345677888888875443
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.4e-16 Score=171.32 Aligned_cols=170 Identities=25% Similarity=0.226 Sum_probs=101.2
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCC-------------CCCccCcccccCccCcEeE-eecCCCccCCc
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCS-------------KLDKLPDNIGNLKSLGHIS-AAGSAISQLPS 66 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~-------------~l~~lp~~l~~l~~L~~L~-L~~~~l~~lp~ 66 (544)
+++|+.|+|++|.++.+|..+++|++|+.|++++|. ..+..|..++.+++|+.|+ ++.+.+..++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 367889999999999999999999999999987653 3445566666666666655 33332221111
Q ss_pred ------cCCC--CCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchh
Q 009084 67 ------SVAD--SNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPAS 138 (544)
Q Consensus 67 ------~~~~--l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~ 138 (544)
.+.. ...|+.|++++|. +..+|. +..+++|+.|++++|.+..+|..++.+++|+.|+|++|.++.+| .
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhcccccccCccCceEEEecCCC-CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 0000 0135566666654 444554 55566666666666666666666666666666666666666655 5
Q ss_pred hcCCCCccEEEecCCCCCCCC-CCC---CCCCCEEEEecC
Q 009084 139 IKQLSRLRSLHLEDCKMLQSL-PEL---PLCLKSLELRDC 174 (544)
Q Consensus 139 l~~l~~L~~L~L~~~~~l~~l-p~~---~~~L~~L~l~~~ 174 (544)
++.+++|+.|+|++|...... |.. +++|+.|+++++
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 566666666666665432221 322 355666666554
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=1.3e-14 Score=147.49 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=112.2
Q ss_pred cEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CC-CCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEe
Q 009084 28 EVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VA-DSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRIS 105 (544)
Q Consensus 28 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~-~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~ 105 (544)
+.++++++ .+..+|..+. ..++.|+|++|.++.++.. +. ++++|+.|++++|. +..++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence 57777763 6677776543 4578888888888877654 33 77888888888776 566665557778888888888
Q ss_pred ccCCCCCCh-hccCCCCccEEEEeCccCCCC-chhhcCCCCccEEEecCCCCCCCCCC-------CCCCCCEEEEecCCC
Q 009084 106 YSAVMEIPQ-EIACLSSLTGLHLSGNNFESL-PASIKQLSRLRSLHLEDCKMLQSLPE-------LPLCLKSLELRDCKM 176 (544)
Q Consensus 106 ~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~-------~~~~L~~L~l~~~~~ 176 (544)
+|.+..++. .+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|. +..+|. .+++|+.|+++++ .
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-K 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-C
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-C
Confidence 888777544 477788888888888888765 4567778888888888876 334442 2467788888665 3
Q ss_pred CCcCCC----CCCC--ccEEEEeCCCC
Q 009084 177 LQSLPA----LPLC--LESLNLTGCNM 197 (544)
Q Consensus 177 l~~l~~----~~~~--L~~L~Ls~c~~ 197 (544)
++.++. .++. ++.|+|++|+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCc
Confidence 444442 1222 36677777764
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=3.1e-14 Score=128.05 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=104.1
Q ss_pred CCCcEEEecCCCCc--ccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc-CCccCCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAIT--ELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ-LPSSVADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~ 78 (544)
++|++|++++|.++ .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. +|..++++++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56888888888887 788777888888888888875 5555 557888888888888888886 666666788888888
Q ss_pred EecCCCCCccCh-hhhcCCCCCCEEEEeccCCCCCCh----hccCCCCccEEEEeCccCCCCchh
Q 009084 79 FSSCKGLVSLPR-SLLLGLSSLGLLRISYSAVMEIPQ----EIACLSSLTGLHLSGNNFESLPAS 138 (544)
Q Consensus 79 l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~lp~----~l~~l~~L~~L~l~~~~l~~lp~~ 138 (544)
+++|. +..++. ..+..+++|+.|++++|.+..+|. .+..+++|+.|++++|.+.++|.+
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88875 566552 237788888888888888887765 677888888888888888777753
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=3.2e-14 Score=134.12 Aligned_cols=131 Identities=24% Similarity=0.353 Sum_probs=115.8
Q ss_pred CCCcEEEecCCCCcccCc-ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELPS-SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 79 (544)
++|++|+|++|.|+.++. .+..+++|++|+|++|......|..+.++++|++|+|++|.++.+|.. +..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 479999999999998886 589999999999999865555588899999999999999999999876 578999999999
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~ 133 (544)
++|. +..++...+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9987 566655558999999999999999999665 5888999999999999875
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=3.7e-16 Score=160.49 Aligned_cols=220 Identities=18% Similarity=0.185 Sum_probs=168.5
Q ss_pred CCCCcEEEecCCCCcc-----cCcccCCCCCccEEeeecCCC--C-CccCccc-------ccCccCcEeEeecCCCcc--
Q 009084 1 MEHLKRIYLGRTAITE-----LPSSFENLPGLEVLFVEDCSK--L-DKLPDNI-------GNLKSLGHISAAGSAISQ-- 63 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~c~~--l-~~lp~~l-------~~l~~L~~L~L~~~~l~~-- 63 (544)
+++|++|+|++|.++. ++..+..+++|++|+|++|.. + ..+|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4689999999999873 445588899999999999732 2 2445544 689999999999999986
Q ss_pred ---CCccCCCCCCccEEEEecCCCCCccChhh----hcCC---------CCCCEEEEeccCCCC--CC---hhccCCCCc
Q 009084 64 ---LPSSVADSNVLGILDFSSCKGLVSLPRSL----LLGL---------SSLGLLRISYSAVME--IP---QEIACLSSL 122 (544)
Q Consensus 64 ---lp~~~~~l~~L~~L~l~~c~~l~~lp~~~----~~~l---------~~L~~L~l~~~~~~~--lp---~~l~~l~~L 122 (544)
+|..+..+++|++|++++|.. ....... +..+ ++|++|++++|.+.. ++ ..+..+++|
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 777888999999999999973 3222111 3333 899999999999873 54 567789999
Q ss_pred cEEEEeCccCC------CCchhhcCCCCccEEEecCCCCC----CCCCC---CCCCCCEEEEecCCCCCc----CCC---
Q 009084 123 TGLHLSGNNFE------SLPASIKQLSRLRSLHLEDCKML----QSLPE---LPLCLKSLELRDCKMLQS----LPA--- 182 (544)
Q Consensus 123 ~~L~l~~~~l~------~lp~~l~~l~~L~~L~L~~~~~l----~~lp~---~~~~L~~L~l~~~~~l~~----l~~--- 182 (544)
++|++++|.++ -++..+..+++|+.|+|++|... ..+|. ..++|+.|++++|..-.. ++.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 99999999988 23337889999999999999852 33332 347899999998863322 222
Q ss_pred --CCCCccEEEEeCCCCCC----CCCCC----CCCccEEEEeCCCCCCc
Q 009084 183 --LPLCLESLNLTGCNMLR----SLPAL----PLCLESLNLTGCNMLRS 221 (544)
Q Consensus 183 --~~~~L~~L~Ls~c~~l~----~l~~~----~~~L~~L~Ls~c~~l~~ 221 (544)
..++|+.|+|++|.... .+|.. +++|++|+|++|.....
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 26789999999999876 35543 79999999999755443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.8e-14 Score=133.31 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=113.7
Q ss_pred CCCCcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc-CCccCCCCCCccEEEE
Q 009084 1 MEHLKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ-LPSSVADSNVLGILDF 79 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~l 79 (544)
+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|++++|.++. .|..++.+++|+.|++
T Consensus 65 l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 578999999999888776 48899999999999986655578889999999999999999995 6778999999999999
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~ 133 (544)
++|..++.++. +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.
T Consensus 144 ~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 144 SYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred cCCCCccccHh--hcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 99987888874 889999999999999999887 7889999999999999875
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=6.5e-16 Score=157.22 Aligned_cols=206 Identities=18% Similarity=0.162 Sum_probs=98.2
Q ss_pred EeeecCCCCCccCcccccCccCcEeEeecCCCccCC-----ccCCCCC-CccEEEEecCCCCCccChhhhcCC-----CC
Q 009084 30 LFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-----SSVADSN-VLGILDFSSCKGLVSLPRSLLLGL-----SS 98 (544)
Q Consensus 30 L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-----~~~~~l~-~L~~L~l~~c~~l~~lp~~~~~~l-----~~ 98 (544)
+.++.+...+.+|..+...++|++|++++|.++..+ ..+..++ +|+.|++++|. +.......+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCC
Confidence 345554444445554444445666666666666544 3444555 56666666654 333322212222 56
Q ss_pred CCEEEEeccCCCCCCh-----hccCC-CCccEEEEeCccCCCCch-----hhcC-CCCccEEEecCCCCCCC----CC--
Q 009084 99 LGLLRISYSAVMEIPQ-----EIACL-SSLTGLHLSGNNFESLPA-----SIKQ-LSRLRSLHLEDCKMLQS----LP-- 160 (544)
Q Consensus 99 L~~L~l~~~~~~~lp~-----~l~~l-~~L~~L~l~~~~l~~lp~-----~l~~-l~~L~~L~L~~~~~l~~----lp-- 160 (544)
|++|++++|.+...+. .+..+ ++|++|++++|.++..+. .+.. .++|++|++++|..... ++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6666666666554221 13333 566666666666554332 1223 24566666666543211 10
Q ss_pred --CCCCCCCEEEEecCCCCCcCCC--------CC-CCccEEEEeCCCCCCC----CCCC----CCCccEEEEeCCCCCCc
Q 009084 161 --ELPLCLKSLELRDCKMLQSLPA--------LP-LCLESLNLTGCNMLRS----LPAL----PLCLESLNLTGCNMLRS 221 (544)
Q Consensus 161 --~~~~~L~~L~l~~~~~l~~l~~--------~~-~~L~~L~Ls~c~~l~~----l~~~----~~~L~~L~Ls~c~~l~~ 221 (544)
..+.+|+.|++++|. ++..+. .. .+|+.|+|++|..... ++.. .++|++|+|++|. ++.
T Consensus 162 l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCC
T ss_pred HhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCc
Confidence 122356666665553 221111 11 3566666666654331 1111 2356666666643 322
Q ss_pred CC--------CCCCCCCEEeEecCC
Q 009084 222 LP--------ELPLCLKYLYLGDCN 238 (544)
Q Consensus 222 lp--------~~~~~L~~L~L~~~~ 238 (544)
.+ ..+++|+.|++++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 21 233556666666664
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=1.2e-15 Score=168.90 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=94.2
Q ss_pred CCcEEEecCCCCcccCcccCCCCCccEEeeec----CCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEE
Q 009084 3 HLKRIYLGRTAITELPSSFENLPGLEVLFVED----CSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILD 78 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~----c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 78 (544)
+++.|+|.++.+...+..+.....|..+.+.. ++.+...|+.+..+.+|+.|+|++|.+..+|..++.+++|+.|+
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 46677787777776665544444444444432 12344556678888888888888888888888888888888888
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCCCCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKMLQS 158 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 158 (544)
|++|. +..+|.. +..+++|+.|+|++|.+..+|..++.+++|++|+|++|.++.+|..++.+++|+.|+|++|...+.
T Consensus 254 Ls~N~-l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 254 LNGNS-LTELPAE-IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CTTSC-CSCCCGG-GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred eeCCc-CcccChh-hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 88876 5578876 788888888888888888888888888888888888888888888888888888888888875444
Q ss_pred CC
Q 009084 159 LP 160 (544)
Q Consensus 159 lp 160 (544)
+|
T Consensus 332 ~p 333 (727)
T 4b8c_D 332 FL 333 (727)
T ss_dssp HH
T ss_pred Ch
Confidence 43
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=4.8e-16 Score=168.65 Aligned_cols=303 Identities=16% Similarity=0.082 Sum_probs=187.2
Q ss_pred CCCCcEEEecCCCCcc-----cCcccCCCCCccEEeeecCC-CC--CccCcccccCccCcEeEeecC-CCccCCccCCCC
Q 009084 1 MEHLKRIYLGRTAITE-----LPSSFENLPGLEVLFVEDCS-KL--DKLPDNIGNLKSLGHISAAGS-AISQLPSSVADS 71 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~c~-~l--~~lp~~l~~l~~L~~L~L~~~-~l~~lp~~~~~l 71 (544)
+++|++|+|+++.++. ++.....+++|+.|++++|. .+ ..++..+..+++|++|+++++ .+..++..+..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 5789999999988653 33434578899999999986 11 112233456799999999876 666788888889
Q ss_pred CCccEEEEecCCC------CCccChhhhcCCCCCCEE-EEeccCCCCCChhccCCCCccEEEEeCccCC--CCchhhcCC
Q 009084 72 NVLGILDFSSCKG------LVSLPRSLLLGLSSLGLL-RISYSAVMEIPQEIACLSSLTGLHLSGNNFE--SLPASIKQL 142 (544)
Q Consensus 72 ~~L~~L~l~~c~~------l~~lp~~~~~~l~~L~~L-~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l 142 (544)
++|+.|++..|.. +..++.. +.++++|+.| .+.+.....++..+..+++|++|++++|.++ .+...+..+
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~-l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVA-LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHH-HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CcceEcccccccCccchhhHHHHHHH-HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 9999999877642 1223333 6777888887 3333333335555556788888888888765 233335677
Q ss_pred CCccEEEecCCCCCCCCC---CCCCCCCEEEEecC--------CCCCc-----CCCCCCCccEEEEeCCCCCCCCCC---
Q 009084 143 SRLRSLHLEDCKMLQSLP---ELPLCLKSLELRDC--------KMLQS-----LPALPLCLESLNLTGCNMLRSLPA--- 203 (544)
Q Consensus 143 ~~L~~L~L~~~~~l~~lp---~~~~~L~~L~l~~~--------~~l~~-----l~~~~~~L~~L~Ls~c~~l~~l~~--- 203 (544)
++|+.|++.+|..-..++ ...++|+.|++.+| ..++. +...+++|+.|.+..+........
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 888888888772111111 12467888888543 33321 112356788886665554332111
Q ss_pred -CCCCccEEEEe-----CCCCCCcCCC---------CCCCCCEEeEecCCCCCC-----CCcccCCCCeeeeccCCCCCC
Q 009084 204 -LPLCLESLNLT-----GCNMLRSLPE---------LPLCLKYLYLGDCNMLRS-----LPELSLCLQSLNAWNCNRLQS 263 (544)
Q Consensus 204 -~~~~L~~L~Ls-----~c~~l~~lp~---------~~~~L~~L~L~~~~~l~~-----lp~~~~~L~~L~l~~c~~L~~ 263 (544)
.+++|+.|+|+ +|+.++..|. .+++|+.|++++ .++. +....++|+.|++.+|.--..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 16788888888 5666765442 346888888866 2221 112246788888888762111
Q ss_pred -CC---CCCCCccEEeccCCCCCCCCCccccccCCCCCCCCCeEEEEecCCC
Q 009084 264 -LP---EIPSCLQELDASVLETLSKPSPDLLQWAPGSLESQPIYFGFTNCLK 311 (544)
Q Consensus 264 -l~---~lp~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~l~~~~C~~ 311 (544)
+. .-.++|++|++++|+. +........... ..++.|++.+|..
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l----~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKL----ETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGG----GGSSEEEEESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhC----CCCCEEeeeCCCC
Confidence 11 1246799999999875 222111000001 1347899999976
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=2e-13 Score=129.49 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=110.8
Q ss_pred ccEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEe
Q 009084 27 LEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRIS 105 (544)
Q Consensus 27 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~ 105 (544)
.+.++.++ ..+..+|..+. ++|++|+|++|.+..+ |..+..+++|+.|++++|. +..++...+..+++|+.|+++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECC
Confidence 56788877 57888997654 8999999999999977 6678899999999999987 688887767899999999999
Q ss_pred ccCCCCCChh-ccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCCCC
Q 009084 106 YSAVMEIPQE-IACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 106 ~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 155 (544)
+|.+..++.. +..+++|+.|++++|+++.+|..+..+++|+.|+|++|..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC
Confidence 9999997654 6889999999999999999999999999999999999863
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=131.10 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=112.9
Q ss_pred CCCcEEEecCCCCcccCc--ccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAITELPS--SFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~ 78 (544)
+.+++|+|++|.++.++. .+..+++|+.|+|++|......+..+.++++|++|+|++|.++.++.. ++.+++|+.|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 367899999999998843 388999999999999754444444799999999999999999988764 88999999999
Q ss_pred EecCCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCC
Q 009084 79 FSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 79 l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~ 133 (544)
+++|. +..++...+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+.
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99988 5556444488999999999999999995 778999999999999999876
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3.6e-14 Score=124.93 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=102.0
Q ss_pred CCCCccEEeeecCCCC-CccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCE
Q 009084 23 NLPGLEVLFVEDCSKL-DKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGL 101 (544)
Q Consensus 23 ~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~ 101 (544)
..++|+.|++++|... +.+|..++.+++|++|++++|.++.+ ..++.+++|+.|++++|.....+|.. +..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCE
Confidence 3577888888887544 37887778888888888888888877 67888888999999888744335554 667889999
Q ss_pred EEEeccCCCCCC--hhccCCCCccEEEEeCccCCCCch----hhcCCCCccEEEecC
Q 009084 102 LRISYSAVMEIP--QEIACLSSLTGLHLSGNNFESLPA----SIKQLSRLRSLHLED 152 (544)
Q Consensus 102 L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~L~~ 152 (544)
|++++|.+..++ ..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999888754 678889999999999998887775 578888999888753
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=9.6e-14 Score=125.92 Aligned_cols=130 Identities=19% Similarity=0.235 Sum_probs=110.1
Q ss_pred cCCCCCccEEeeecCCCCCccCcccccCc-cCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCC
Q 009084 21 FENLPGLEVLFVEDCSKLDKLPDNIGNLK-SLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSL 99 (544)
Q Consensus 21 l~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L 99 (544)
+.++.+|+.|++++| .+..+|. +..+. +|++|++++|.++.+ ..++.+++|+.|++++|. +..+|...+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 567889999999997 5566766 55554 999999999999988 678899999999999987 677776645889999
Q ss_pred CEEEEeccCCCCCCh--hccCCCCccEEEEeCccCCCCchh----hcCCCCccEEEecCCC
Q 009084 100 GLLRISYSAVMEIPQ--EIACLSSLTGLHLSGNNFESLPAS----IKQLSRLRSLHLEDCK 154 (544)
Q Consensus 100 ~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~l~~lp~~----l~~l~~L~~L~L~~~~ 154 (544)
++|++++|.+..+|. .++.+++|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999988887 788899999999999999988875 8889999999998875
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.3e-14 Score=160.71 Aligned_cols=157 Identities=21% Similarity=0.209 Sum_probs=116.2
Q ss_pred CCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChh
Q 009084 12 TAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRS 91 (544)
Q Consensus 12 ~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~ 91 (544)
|.+...+..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.|+.+|..++++++|+.|+|++|. +..+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence 3333345668899999999999974 6689988899999999999999999999999999999999999988 6688887
Q ss_pred hhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCC-chhhcCCC-CccEEEecCCCCCCCCCCCCCCCCEE
Q 009084 92 LLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESL-PASIKQLS-RLRSLHLEDCKMLQSLPELPLCLKSL 169 (544)
Q Consensus 92 ~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~-~L~~L~L~~~~~l~~lp~~~~~L~~L 169 (544)
+..+++|++|+|++|.+..+|..|+.+++|+.|+|++|.++.. |..+..+. .+..|+|.+|.....+ +..|..|
T Consensus 289 -~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~---p~~l~~l 364 (727)
T 4b8c_D 289 -LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL---PHERRFI 364 (727)
T ss_dssp -GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCC----
T ss_pred -hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC---cccccee
Confidence 8999999999999999999999999999999999999999954 44443322 1234677887654433 3456666
Q ss_pred EEecC
Q 009084 170 ELRDC 174 (544)
Q Consensus 170 ~l~~~ 174 (544)
+++.+
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 66544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=3.8e-13 Score=123.83 Aligned_cols=125 Identities=20% Similarity=0.366 Sum_probs=84.4
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCc--ccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEec
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPD--NIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSS 81 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~ 81 (544)
++|++++++++++|..+.. +|++|++++| .+..++. .++.+++|++|+|++|.++.+ |..++.+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5677788888777765533 7778888776 4444443 267777777777777777766 55677777777777777
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeCccCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~ 133 (544)
|. +..++...+..+++|++|++++|.+.. .|..++.+++|++|++++|.+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred Cc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 65 455554446666777777777776666 4555666667777777666655
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=7.7e-13 Score=121.88 Aligned_cols=123 Identities=24% Similarity=0.351 Sum_probs=60.1
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCC
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCK 83 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 83 (544)
++++++++.++++|..+ .++|++|+|++| .+..+|..+.++++|++|+|++|.++.++. .+.++++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 34555556666655543 245566666554 344555555555555555555555554442 34455555555555544
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCCCCCCh-hccCCCCccEEEEeCcc
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNN 131 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~ 131 (544)
+..++...+..+++|+.|+|++|.+..+|. .+..+++|+.|++++|.
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 333333224444444444444444444333 23344444444444443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=7e-14 Score=123.05 Aligned_cols=125 Identities=21% Similarity=0.229 Sum_probs=108.7
Q ss_pred CCCcEEEecCCCCc--ccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc-CCccCCCCCCccEEE
Q 009084 2 EHLKRIYLGRTAIT--ELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ-LPSSVADSNVLGILD 78 (544)
Q Consensus 2 ~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~ 78 (544)
++|++|++++|.++ .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57999999999998 89988899999999999997 55555 568999999999999999997 787777899999999
Q ss_pred EecCCCCCccCh-hhhcCCCCCCEEEEeccCCCCCCh----hccCCCCccEEEEeC
Q 009084 79 FSSCKGLVSLPR-SLLLGLSSLGLLRISYSAVMEIPQ----EIACLSSLTGLHLSG 129 (544)
Q Consensus 79 l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~lp~----~l~~l~~L~~L~l~~ 129 (544)
+++|. +..++. ..+..+++|++|++++|.+..++. .++.+++|+.|++++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99987 666541 238899999999999999998775 688999999998763
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.1e-13 Score=123.61 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=112.2
Q ss_pred CCCCcEEEecCCCCcccCcccCCC-CCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccC-CCCCCccEEE
Q 009084 1 MEHLKRIYLGRTAITELPSSFENL-PGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSV-ADSNVLGILD 78 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~l~~l-~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~ 78 (544)
+.+|++|++++|.++.+|. +..+ ++|+.|++++| .+..+ ..++.+++|++|++++|.++.+|..+ +.+++|+.|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3679999999999999876 5554 49999999997 55566 45899999999999999999998765 8999999999
Q ss_pred EecCCCCCccCh-hhhcCCCCCCEEEEeccCCCCCChh----ccCCCCccEEEEeCccCCC
Q 009084 79 FSSCKGLVSLPR-SLLLGLSSLGLLRISYSAVMEIPQE----IACLSSLTGLHLSGNNFES 134 (544)
Q Consensus 79 l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~lp~~----l~~l~~L~~L~l~~~~l~~ 134 (544)
+++|. ++.+|. ..+..+++|+.|++++|.+..+|.. ++.+++|+.|++++|.+.+
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99987 677776 2378999999999999999988875 8899999999999997664
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=120.22 Aligned_cols=124 Identities=23% Similarity=0.393 Sum_probs=108.0
Q ss_pred cEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEecc
Q 009084 28 EVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYS 107 (544)
Q Consensus 28 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~ 107 (544)
++++++++ .++.+|..+. ++|++|++++|.++.+|..+.++++|+.|++++|. +..++...+..+++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 67888874 6788887653 68999999999999999999999999999999987 66777666899999999999999
Q ss_pred CCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecCCCC
Q 009084 108 AVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 108 ~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~ 155 (544)
.+..++. .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9998654 68899999999999999998887 478899999999999863
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=3.7e-12 Score=115.47 Aligned_cols=127 Identities=24% Similarity=0.344 Sum_probs=84.5
Q ss_pred CcEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccC-cccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEEec
Q 009084 4 LKRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLP-DNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDFSS 81 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~ 81 (544)
.+.+++++++++.+|..+ .++|+.|++++|. +..+| ..++.+++|++|++++|.++.+|.. ++.+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356777777777777543 3677888888764 34444 3457777777777777777776654 46777777777777
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFES 134 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~ 134 (544)
|. +..++...+..+++|++|++++|.+..+|.. +..+++|++|++++|.+..
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 65 4555554456667777777777776665554 4566677777777776653
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2.8e-12 Score=118.01 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=104.6
Q ss_pred cEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc--CCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEe
Q 009084 28 EVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS--VADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRIS 105 (544)
Q Consensus 28 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~--~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~ 105 (544)
++++++++ .++.+|..+.. +|++|++++|.++.++.. ++.+++|+.|++++|. +..+++..+..+++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECC
Confidence 78999985 67888886654 899999999999988864 8899999999999987 555544348899999999999
Q ss_pred ccCCCCCC-hhccCCCCccEEEEeCccCCCC-chhhcCCCCccEEEecCCCC
Q 009084 106 YSAVMEIP-QEIACLSSLTGLHLSGNNFESL-PASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 106 ~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~ 155 (544)
+|.+..++ ..++.+++|++|++++|+++.+ |..+..+++|+.|++++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 99999854 4588999999999999999955 66788899999999999874
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.5e-14 Score=134.04 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=89.0
Q ss_pred CcEEEecCC--CCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 4 LKRIYLGRT--AITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 4 L~~L~L~~~--~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
|+.+.+.+. .++.+|..++.+++|++|++++| .+..+| .+..+++|++|++++|.++.+|..+..+++|+.|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 444444442 44555556667777777777765 344466 56677777777777777777776666667777777777
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCCh--hccCCCCccEEEEeCccCCCCchh-----------hcCCCCccEE
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQ--EIACLSSLTGLHLSGNNFESLPAS-----------IKQLSRLRSL 148 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~l~~lp~~-----------l~~l~~L~~L 148 (544)
|. +..+|. +..+++|+.|++++|.+..++. .+..+++|++|++++|.+...+.. +..+++|+.|
T Consensus 103 N~-l~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 103 NQ-IASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EE-CCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred Cc-CCcCCc--cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 64 455553 5666677777777777666443 566677777777777766533221 5566666666
Q ss_pred E
Q 009084 149 H 149 (544)
Q Consensus 149 ~ 149 (544)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=3.1e-12 Score=137.38 Aligned_cols=120 Identities=20% Similarity=0.245 Sum_probs=104.3
Q ss_pred CccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEe
Q 009084 26 GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRIS 105 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~ 105 (544)
.|+.|+|++| .+..+|. ++.+++|+.|+|++|.++.+|..++++++|+.|++++|. +..+| . +..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECC
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECC
Confidence 5889999996 6677887 899999999999999999999999999999999999987 66687 3 8899999999999
Q ss_pred ccCCCCC--ChhccCCCCccEEEEeCccCCCCchhh----cCCCCccEEEe
Q 009084 106 YSAVMEI--PQEIACLSSLTGLHLSGNNFESLPASI----KQLSRLRSLHL 150 (544)
Q Consensus 106 ~~~~~~l--p~~l~~l~~L~~L~l~~~~l~~lp~~l----~~l~~L~~L~L 150 (544)
+|.+..+ |..++.+++|+.|++++|.++.+|+.+ ..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999986 889999999999999999998777543 44889998864
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.4e-11 Score=110.07 Aligned_cols=127 Identities=20% Similarity=0.307 Sum_probs=105.2
Q ss_pred CccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEE
Q 009084 26 GLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRI 104 (544)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 104 (544)
..+.++++++ .+..+|..+ .++|++|++++|.++.++.. ++.+++|+.|++++|. +..++...+..+++|+.|++
T Consensus 8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence 3577888874 677788644 47899999999999988764 5889999999999986 67777765788999999999
Q ss_pred eccCCCCCChh-ccCCCCccEEEEeCccCCCCchh-hcCCCCccEEEecCCCCC
Q 009084 105 SYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPAS-IKQLSRLRSLHLEDCKML 156 (544)
Q Consensus 105 ~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l 156 (544)
++|.+..++.. ++.+++|++|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999986654 68899999999999999988875 477899999999998754
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=3.2e-13 Score=124.90 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=106.6
Q ss_pred CCCCccEEeeecCCC------CCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCC
Q 009084 23 NLPGLEVLFVEDCSK------LDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGL 96 (544)
Q Consensus 23 ~l~~L~~L~L~~c~~------l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l 96 (544)
....++.++++++.. ++.+|..++.+++|++|++++|.++.+| .++.+++|+.|++++|. +..+|.. +..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~-~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENL-DAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSH-HHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccch-hhcC
Confidence 344444444444433 3445558999999999999999999998 88899999999999987 6678875 6677
Q ss_pred CCCCEEEEeccCCCCCChhccCCCCccEEEEeCccCCCCch--hhcCCCCccEEEecCCCCC
Q 009084 97 SSLGLLRISYSAVMEIPQEIACLSSLTGLHLSGNNFESLPA--SIKQLSRLRSLHLEDCKML 156 (544)
Q Consensus 97 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l 156 (544)
++|+.|++++|.+..+| .++.+++|+.|++++|.++.++. .+..+++|+.|++++|...
T Consensus 93 ~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 89999999999999887 68889999999999999998775 6889999999999998743
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=9.4e-11 Score=105.89 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=67.7
Q ss_pred cEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEec
Q 009084 28 EVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISY 106 (544)
Q Consensus 28 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~ 106 (544)
+.++++++ .++.+|..+. ++|++|+|++|.++.+ |..++++++|+.|++++|. +..+|...+..+++|+.|+|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 45566553 4455665443 5666666666666655 3455666666666666654 5556655456677777777777
Q ss_pred cCCCCCChh-ccCCCCccEEEEeCccCCCCch
Q 009084 107 SAVMEIPQE-IACLSSLTGLHLSGNNFESLPA 137 (544)
Q Consensus 107 ~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~ 137 (544)
|.+..+|.. ++.+++|+.|++++|.+...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 777776654 6777777777777777775554
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1e-10 Score=105.68 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=50.7
Q ss_pred cEeEeecCCCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCc
Q 009084 52 GHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGN 130 (544)
Q Consensus 52 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~ 130 (544)
+.++++++.++.+|..+. ++|+.|++++|. +..+++..+..+++|++|+|++|.+..+|.. ++.+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 445555555555555443 455555555544 3333332245555555555555555554443 345555555555555
Q ss_pred cCCCCchh-hcCCCCccEEEecCCC
Q 009084 131 NFESLPAS-IKQLSRLRSLHLEDCK 154 (544)
Q Consensus 131 ~l~~lp~~-l~~l~~L~~L~L~~~~ 154 (544)
+++.+|.. +..+++|+.|+|++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 55555543 4555555555555554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=1.7e-10 Score=103.73 Aligned_cols=104 Identities=22% Similarity=0.304 Sum_probs=60.2
Q ss_pred cEEeeecCCCCCccCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEec
Q 009084 28 EVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISY 106 (544)
Q Consensus 28 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~ 106 (544)
+.|+++++ .+..+|..+ .++|++|+|++|.++.+ |..++.+++|+.|++++|. +..++...+..+++|++|+|++
T Consensus 12 ~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 45555552 344455433 24555555555555555 3345556666666666654 4455554456666677777777
Q ss_pred cCCCCCCh-hccCCCCccEEEEeCccCCCC
Q 009084 107 SAVMEIPQ-EIACLSSLTGLHLSGNNFESL 135 (544)
Q Consensus 107 ~~~~~lp~-~l~~l~~L~~L~l~~~~l~~l 135 (544)
|.+..+|. .++.+++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 76666554 366677777777777766533
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.8e-10 Score=102.29 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=47.4
Q ss_pred cEEEecCCCCcccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCcc-CCCCCCccEEEEecCC
Q 009084 5 KRIYLGRTAITELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPSS-VADSNVLGILDFSSCK 83 (544)
Q Consensus 5 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~c~ 83 (544)
++|+++++.++++|..+ .++|++|+|++|......|..+.++++|++|+|++|.++.+|.. +..+++|+.|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 34455555555554433 24455555555432222234444555555555555555544443 2445555555555543
Q ss_pred CCCccChhhhcCCCCCCEEEEeccCC
Q 009084 84 GLVSLPRSLLLGLSSLGLLRISYSAV 109 (544)
Q Consensus 84 ~l~~lp~~~~~~l~~L~~L~l~~~~~ 109 (544)
+..++...+..+++|+.|++++|.+
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 3344433344455555555555543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=8.3e-10 Score=110.36 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=122.2
Q ss_pred CCCCcEEEecCCCCc--------------------ccCcc-cCC--------CCCccEEeeecCCCCCccCc-ccccCcc
Q 009084 1 MEHLKRIYLGRTAIT--------------------ELPSS-FEN--------LPGLEVLFVEDCSKLDKLPD-NIGNLKS 50 (544)
Q Consensus 1 l~~L~~L~L~~~~i~--------------------~lp~~-l~~--------l~~L~~L~L~~c~~l~~lp~-~l~~l~~ 50 (544)
+++|++|+|++|.|. .+|.. |.+ +++|+.|+|.+ .++.+++ .|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 468999999998888 44543 667 89999999987 5666655 4888999
Q ss_pred CcEeEeecCCCccCCc-cCCCCCCccEEEEec-----------------CCCCC---------ccChhh-----------
Q 009084 51 LGHISAAGSAISQLPS-SVADSNVLGILDFSS-----------------CKGLV---------SLPRSL----------- 92 (544)
Q Consensus 51 L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~-----------------c~~l~---------~lp~~~----------- 92 (544)
|+.|++..|.+..++. .+..+.++..+.+.. |..+. .++...
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 9999998888776654 344444444443221 11111 011100
Q ss_pred ----------------hcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCch-hhcCCCCcc-EEEecCC
Q 009084 93 ----------------LLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLPA-SIKQLSRLR-SLHLEDC 153 (544)
Q Consensus 93 ----------------~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~-~L~L~~~ 153 (544)
...+++|+.|++++|.+..++.. |..+.+|+.|++.++ ++.++. .+.++++|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 01278899999999888887664 888999999999887 776664 578888998 999987
Q ss_pred CCCCCCCC----CCCCCCEEEEecCCCCCcCCC----CCCCccEEE
Q 009084 154 KMLQSLPE----LPLCLKSLELRDCKMLQSLPA----LPLCLESLN 191 (544)
Q Consensus 154 ~~l~~lp~----~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~ 191 (544)
.++.++. ...+|+.|++.+. .++.++. ...+|+.|+
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred -cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 3555543 2367888887443 4454443 234555553
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.7e-09 Score=108.09 Aligned_cols=150 Identities=16% Similarity=0.219 Sum_probs=100.5
Q ss_pred CCCCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCC------------------C
Q 009084 1 MEHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSA------------------I 61 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~------------------l 61 (544)
|++|+.|+|.. .++.++.. |.+|++|+.|++.++.....-+..|..+.++..+.+..+. +
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 57899999998 89988875 8999999999999865433333445555555555443210 0
Q ss_pred c---------cCCcc-------------------C---------CCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEE
Q 009084 62 S---------QLPSS-------------------V---------ADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRI 104 (544)
Q Consensus 62 ~---------~lp~~-------------------~---------~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 104 (544)
+ .++.. + ..+++|+.|++.+|. +..++..+|.++.+|+.|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEEC
Confidence 0 00000 0 026778888887765 67777777888888888888
Q ss_pred eccCCCCCCh-hccCCCCcc-EEEEeCccCCCCc-hhhcCCCCccEEEecCCC
Q 009084 105 SYSAVMEIPQ-EIACLSSLT-GLHLSGNNFESLP-ASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 105 ~~~~~~~lp~-~l~~l~~L~-~L~l~~~~l~~lp-~~l~~l~~L~~L~L~~~~ 154 (544)
.++ +..++. .|..+.+|+ .|++.. +++.++ ..+.++++|+.|++.++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 776 555544 477788888 888877 666665 467778888888886654
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=9.7e-08 Score=97.87 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=67.8
Q ss_pred CcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccC-cccccCccCcEeEeecCCCccCCccCCCCCCccEEEEec
Q 009084 4 LKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLP-DNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSS 81 (544)
Q Consensus 4 L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 81 (544)
|+.+.+..+ ++.++.. |.++ +|+.+.+.. .+..++ ..|.++.+|+.+++..|.++.++.......+|+.+.+..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 444444332 4444332 3332 455555543 333333 235555566666665555555555444455555555543
Q ss_pred CCCCCccChhhhcCCCCCCEEEEeccCCCCCChh-ccCCCCccEEEEeCccCCCCc-hhhcCCCCccEEEecCC
Q 009084 82 CKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQE-IACLSSLTGLHLSGNNFESLP-ASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 82 c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~L~~~ 153 (544)
+ +..++..++.++++|+.+.+..+ +..++.. |.. .+|+.+.+. ++++.++ ..+.++++|+.+.+.++
T Consensus 213 ~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 213 T--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp T--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred c--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence 2 45555555555556666655542 3333322 333 455555553 2344332 24455556666665554
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=5.6e-09 Score=105.01 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=48.4
Q ss_pred EeeecCCCCCccCcccccCccCcEeEeec-CCCccCC-ccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEecc
Q 009084 30 LFVEDCSKLDKLPDNIGNLKSLGHISAAG-SAISQLP-SSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYS 107 (544)
Q Consensus 30 L~L~~c~~l~~lp~~l~~l~~L~~L~L~~-~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~ 107 (544)
+++++++.+..+|. +..+.+|++|+|++ |.++.+| ..++++++|+.|+|++|. +..+++..+.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 34444324555555 55555555555553 5555544 234555555555555543 33444333444555555555555
Q ss_pred CCCCCChhccCCCCccEEEEeCccCC
Q 009084 108 AVMEIPQEIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 108 ~~~~lp~~l~~l~~L~~L~l~~~~l~ 133 (544)
.+..+|..+.....|+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 54444433222222444444444443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=6.4e-09 Score=104.60 Aligned_cols=102 Identities=25% Similarity=0.226 Sum_probs=73.1
Q ss_pred EeEeecC-CCccCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCc
Q 009084 53 HISAAGS-AISQLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGN 130 (544)
Q Consensus 53 ~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~ 130 (544)
.++++++ .++.+|. ++.+++|+.|+|++++.+..++...+..+++|+.|+|++|.+..+ |..|+.+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 7778887 777888888888763446777765577788888888888877774 445677888888888888
Q ss_pred cCCCCchhhcCCCCccEEEecCCCC
Q 009084 131 NFESLPASIKQLSRLRSLHLEDCKM 155 (544)
Q Consensus 131 ~l~~lp~~l~~l~~L~~L~L~~~~~ 155 (544)
+++.+|..+.....|+.|+|.+|..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 8887776544333488888877753
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=1.7e-10 Score=117.36 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=99.9
Q ss_pred CCCcEEEecCCCCcc-----cCcccC-CCCCccEEeeecCCCCCc-cCcccccCccCcEeEeecCCCccC-----CccC-
Q 009084 2 EHLKRIYLGRTAITE-----LPSSFE-NLPGLEVLFVEDCSKLDK-LPDNIGNLKSLGHISAAGSAISQL-----PSSV- 68 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~-----lp~~l~-~l~~L~~L~L~~c~~l~~-lp~~l~~l~~L~~L~L~~~~l~~l-----p~~~- 68 (544)
++|++|+|++|.++. +...+. ..++|++|+|++|..... +......+++|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 568888898888873 222222 236888899988753222 112223467888888888887632 2222
Q ss_pred CCCCCccEEEEecCCCCCc-----cChhhhcCCCCCCEEEEeccCCCC-----CChhccCCCCccEEEEeCccCC-----
Q 009084 69 ADSNVLGILDFSSCKGLVS-----LPRSLLLGLSSLGLLRISYSAVME-----IPQEIACLSSLTGLHLSGNNFE----- 133 (544)
Q Consensus 69 ~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~----- 133 (544)
...++|+.|++++|. ++. ++.. +...++|++|+|++|.+.+ ++..+...++|+.|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 345778888888876 433 2222 4567788888888888764 4556667778888888888877
Q ss_pred CCchhhcCCCCccEEEecCCC
Q 009084 134 SLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 134 ~lp~~l~~l~~L~~L~L~~~~ 154 (544)
.+...+...++|++|+|++|.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 244455667788888888875
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=7.8e-07 Score=91.12 Aligned_cols=160 Identities=12% Similarity=0.216 Sum_probs=118.7
Q ss_pred CCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEe
Q 009084 3 HLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFS 80 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~ 80 (544)
+|+.+.+.. .++.++.. |.+|++|+.+++.++ .+..++...-...+|+.+.+.. .++.++. .+.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence 578888875 67777754 889999999999885 6777777654578999999974 4777764 56789999999998
Q ss_pred cCCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCC-----CCc-hhhcCCCCccEEEecCC
Q 009084 81 SCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFE-----SLP-ASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 81 ~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~-----~lp-~~l~~l~~L~~L~L~~~ 153 (544)
.+ +..++..++.+ .+|+.+.+. +.+..+ ...|..+++|+.+.+.++.+. .++ ..+.++++|+.+.+.++
T Consensus 235 ~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 235 EN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES 310 (401)
T ss_dssp TT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred CC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc
Confidence 63 67888776777 789999995 445555 446888999999999988665 343 46778889999988743
Q ss_pred CCCCCCCCC----CCCCCEEEE
Q 009084 154 KMLQSLPEL----PLCLKSLEL 171 (544)
Q Consensus 154 ~~l~~lp~~----~~~L~~L~l 171 (544)
++.++.. ..+|+.+.+
T Consensus 311 --i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 311 --IRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp --CCEECTTTTTTCCSCCEEEE
T ss_pred --eEEEhhhhhcCCCCccEEEE
Confidence 4444321 245555555
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=1.9e-08 Score=101.53 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=76.3
Q ss_pred CcccCCCCCccEEeeecCCC---------CCccCcccccCccCcEeEeecCCCccCCccCCCCCCccEEEEecCCCCCcc
Q 009084 18 PSSFENLPGLEVLFVEDCSK---------LDKLPDNIGNLKSLGHISAAGSAISQLPSSVADSNVLGILDFSSCKGLVSL 88 (544)
Q Consensus 18 p~~l~~l~~L~~L~L~~c~~---------l~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l 88 (544)
..++..+++|+.|.+.+... ...+...+..+++|+.|+|+++.-..++. + .+++|+.|++..|......
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH
Confidence 33345566777776654211 01233334566777777776552123333 2 2667777777665421111
Q ss_pred Chh-hhcCCCCCCEEEEecc--C------CCCCChhc--cCCCCccEEEEeCccCCC-Cchhh---cCCCCccEEEecCC
Q 009084 89 PRS-LLLGLSSLGLLRISYS--A------VMEIPQEI--ACLSSLTGLHLSGNNFES-LPASI---KQLSRLRSLHLEDC 153 (544)
Q Consensus 89 p~~-~~~~l~~L~~L~l~~~--~------~~~lp~~l--~~l~~L~~L~l~~~~l~~-lp~~l---~~l~~L~~L~L~~~ 153 (544)
... ....+++|+.|+|+.+ . +..+...+ ..+++|+.|++.+|.+.. .+..+ ..+++|+.|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 111 0125677777776531 1 11111222 235677777777766541 11112 24567777777665
Q ss_pred CCCCC----CCCC---CCCCCEEEEecC
Q 009084 154 KMLQS----LPEL---PLCLKSLELRDC 174 (544)
Q Consensus 154 ~~l~~----lp~~---~~~L~~L~l~~~ 174 (544)
..-.. ++.. +++|+.|++++|
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 42211 2221 356777777655
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=4.8e-09 Score=106.53 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=99.4
Q ss_pred CCCcEEEecCCCCcc--cCcccCCCCCccEEeeecCCCCCccCccc-----ccCccCcEeEeecCCCcc-----CCccCC
Q 009084 2 EHLKRIYLGRTAITE--LPSSFENLPGLEVLFVEDCSKLDKLPDNI-----GNLKSLGHISAAGSAISQ-----LPSSVA 69 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~L~~c~~l~~lp~~l-----~~l~~L~~L~L~~~~l~~-----lp~~~~ 69 (544)
++|++|+|++|.++. +......+++|+.|+|++|.....-...+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 589999999999973 33323457799999999985432222222 246889999999999873 555667
Q ss_pred CCCCccEEEEecCCCCCcc-----ChhhhcCCCCCCEEEEeccCCCC-----CChhccCCCCccEEEEeCccCCC
Q 009084 70 DSNVLGILDFSSCKGLVSL-----PRSLLLGLSSLGLLRISYSAVME-----IPQEIACLSSLTGLHLSGNNFES 134 (544)
Q Consensus 70 ~l~~L~~L~l~~c~~l~~l-----p~~~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~ 134 (544)
.+++|++|++++|. +++. ... +...++|+.|+|++|.+.. +...+...++|++|+|++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 88999999999987 5432 232 5677899999999999875 45556678999999999999873
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=1.1e-06 Score=89.93 Aligned_cols=126 Identities=11% Similarity=0.168 Sum_probs=55.4
Q ss_pred cCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecC----------------
Q 009084 21 FENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSC---------------- 82 (544)
Q Consensus 21 l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c---------------- 82 (544)
|.++.+|+.+.|.. .++.+++ .|.++.+|+.+++..+ ++.++. .+.++.+|+.+.+...
T Consensus 67 F~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 55566666666643 2444433 2555566666655422 333322 2333444443332211
Q ss_pred ----CCCCccChhhhcCCCCCCEEEEeccCCCCCC-hhccCCCCccEEEEeCccCCCCc-hhhcCCCCccEEEec
Q 009084 83 ----KGLVSLPRSLLLGLSSLGLLRISYSAVMEIP-QEIACLSSLTGLHLSGNNFESLP-ASIKQLSRLRSLHLE 151 (544)
Q Consensus 83 ----~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~L~ 151 (544)
.....+...++.++.+|+.+.+..+. ..++ ..|..+.+|+.+.+..+ ++.++ ..+.++..|+.+.+.
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 11222333335555666666654332 2222 23455556666655443 22222 133444455544443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=3.5e-07 Score=92.14 Aligned_cols=151 Identities=13% Similarity=0.209 Sum_probs=105.1
Q ss_pred CCCCcEEEecCCCCc----------ccCcccCCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCcc-CCccC-
Q 009084 1 MEHLKRIYLGRTAIT----------ELPSSFENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQ-LPSSV- 68 (544)
Q Consensus 1 l~~L~~L~L~~~~i~----------~lp~~l~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~-lp~~~- 68 (544)
+++|+.|.+...... .+...+..+|+|+.|.|++|..+ .++. +. +++|++|+|..+.+.. ....+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence 468999999764332 24444677899999999997433 3444 43 8999999998887752 11222
Q ss_pred -CCCCCccEEEEecCC-------CCCccChhh-hcCCCCCCEEEEeccCCCC-CChhc---cCCCCccEEEEeCccCCC-
Q 009084 69 -ADSNVLGILDFSSCK-------GLVSLPRSL-LLGLSSLGLLRISYSAVME-IPQEI---ACLSSLTGLHLSGNNFES- 134 (544)
Q Consensus 69 -~~l~~L~~L~l~~c~-------~l~~lp~~~-~~~l~~L~~L~l~~~~~~~-lp~~l---~~l~~L~~L~l~~~~l~~- 134 (544)
..+++|+.|+|+.+. .+..+.... ...+++|+.|++.+|.+.. .+..+ ..+++|++|+|+.|.+..
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 368999999996321 111222211 1358999999999998764 22222 357899999999998873
Q ss_pred ----CchhhcCCCCccEEEecCCC
Q 009084 135 ----LPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 135 ----lp~~l~~l~~L~~L~L~~~~ 154 (544)
++..+..+++|+.|++++|.
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhhcccCCcceEEECCCCc
Confidence 45556778999999999885
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=1.6e-06 Score=78.61 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=60.1
Q ss_pred ccCccCcEeEeecC-CCc-----cCCccCCCCCCccEEEEecCCCCCc-----cChhhhcCCCCCCEEEEeccCCCC---
Q 009084 46 GNLKSLGHISAAGS-AIS-----QLPSSVADSNVLGILDFSSCKGLVS-----LPRSLLLGLSSLGLLRISYSAVME--- 111 (544)
Q Consensus 46 ~~l~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l~~~~~~~--- 111 (544)
...++|++|+|++| .+. .+...+...++|+.|+|++|. +++ +... +...++|++|+|++|.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEM-LKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHH-HHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHH-HHhCCCcCEEECcCCcCCHHHH
Confidence 34455555555554 443 233344445556666666654 222 1111 3344567777777776654
Q ss_pred --CChhccCCCCccEEEE--eCccCC-----CCchhhcCCCCccEEEecCCC
Q 009084 112 --IPQEIACLSSLTGLHL--SGNNFE-----SLPASIKQLSRLRSLHLEDCK 154 (544)
Q Consensus 112 --lp~~l~~l~~L~~L~l--~~~~l~-----~lp~~l~~l~~L~~L~L~~~~ 154 (544)
+...+...++|++|++ ++|.+. .+...+...++|++|+|++|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4455666667777777 667666 244455566777777777664
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=9.6e-06 Score=72.20 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=8.2
Q ss_pred cCCCCccEEEecCCCCC
Q 009084 140 KQLSRLRSLHLEDCKML 156 (544)
Q Consensus 140 ~~l~~L~~L~L~~~~~l 156 (544)
.++++|++|+|++|..+
T Consensus 136 ~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GGCTTCCEEEEESCTTC
T ss_pred hcCCCCCEEECCCCCCC
Confidence 34445555555555443
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=1.6e-05 Score=70.77 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=56.5
Q ss_pred cCcccccCccCcEeEeecCCCccC-CccCCCCCCccEEEEecCCCCCccChhhhcCC----CCCCEEEEeccC-CCC-CC
Q 009084 41 LPDNIGNLKSLGHISAAGSAISQL-PSSVADSNVLGILDFSSCKGLVSLPRSLLLGL----SSLGLLRISYSA-VME-IP 113 (544)
Q Consensus 41 lp~~l~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l----~~L~~L~l~~~~-~~~-lp 113 (544)
+|.....-.+|++|+++++.++.. -..+..+++|+.|+|++|..+++-.-..+..+ ++|++|+|++|. +++ --
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 344322334678888877776621 23356777888888888776665433334443 367788888775 554 11
Q ss_pred hhccCCCCccEEEEeCc-cCC
Q 009084 114 QEIACLSSLTGLHLSGN-NFE 133 (544)
Q Consensus 114 ~~l~~l~~L~~L~l~~~-~l~ 133 (544)
..+..+++|++|++++| +++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCC
T ss_pred HHHhcCCCCCEEECCCCCCCC
Confidence 34556777888888777 344
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=1.7e-06 Score=78.54 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=82.6
Q ss_pred cccCCCCCccEEeeecCCCCC-----ccCcccccCccCcEeEeecCCCcc-----CCccCCCCCCccEEEEecCCCCCc-
Q 009084 19 SSFENLPGLEVLFVEDCSKLD-----KLPDNIGNLKSLGHISAAGSAISQ-----LPSSVADSNVLGILDFSSCKGLVS- 87 (544)
Q Consensus 19 ~~l~~l~~L~~L~L~~c~~l~-----~lp~~l~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~- 87 (544)
..+...+.|++|+|++|..++ .+...+...++|++|+|++|.+.. +...+...+.|++|+|++|. +++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 335678889999998873443 244556677889999999888862 44455566789999999887 443
Q ss_pred ----cChhhhcCCCCCCEEEE--eccCCCC-----CChhccCCCCccEEEEeCccCC
Q 009084 88 ----LPRSLLLGLSSLGLLRI--SYSAVME-----IPQEIACLSSLTGLHLSGNNFE 133 (544)
Q Consensus 88 ----lp~~~~~~l~~L~~L~l--~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~ 133 (544)
+... +...++|++|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333 566778999999 7788775 5556677789999999999765
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00037 Score=70.87 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=154.0
Q ss_pred CCCCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeecC------------CC-----
Q 009084 1 MEHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAGS------------AI----- 61 (544)
Q Consensus 1 l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~~------------~l----- 61 (544)
+.+|+.+.|.. .++.+... |.+|++|+.+++.++ +..+++ .+.++.+|+.+.+..+ .+
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 46789999974 58888765 889999999999753 555544 3667777777665321 11
Q ss_pred ----ccC-CccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccCCCCC-ChhccCCCCccEEEEeCccCCCC
Q 009084 62 ----SQL-PSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEI-PQEIACLSSLTGLHLSGNNFESL 135 (544)
Q Consensus 62 ----~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~l 135 (544)
..+ ...+.++++|+.+.+.+. +..++..++.++.+|+.+.+..+ +..+ ...+..+..|+.+.+..+.. .+
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i 222 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YL 222 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EE
T ss_pred CccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce-Ee
Confidence 111 124678899999999753 56677777889999999988765 3433 33567788888887765432 22
Q ss_pred chhhcCCCCccEEEecCCCCCCCCC----CCCCCCCEEEEecCCCCCcCCC----CCCCccEEEEeCCCCCCCCCCCCCC
Q 009084 136 PASIKQLSRLRSLHLEDCKMLQSLP----ELPLCLKSLELRDCKMLQSLPA----LPLCLESLNLTGCNMLRSLPALPLC 207 (544)
Q Consensus 136 p~~l~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~Ls~c~~l~~l~~~~~~ 207 (544)
.......++|+.+.+.... ..++ .....++.+.+... ...+.. ....++.+.+............+.+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~ 298 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSS 298 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTT
T ss_pred ehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeecccccccccc
Confidence 2233345677777775432 2222 12345666666432 122221 2334555555443222222223778
Q ss_pred ccEEEEeCCCCCCcCCC----CCCCCCEEeEecCCCCCCCCcccCCCCeeeeccCCCCCCCCCCCCCccEEe---ccCCC
Q 009084 208 LESLNLTGCNMLRSLPE----LPLCLKYLYLGDCNMLRSLPELSLCLQSLNAWNCNRLQSLPEIPSCLQELD---ASVLE 280 (544)
Q Consensus 208 L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~lp~sL~~L~---i~~C~ 280 (544)
|+.+.+.. .++.++. ...+|+.++|..+ ++.+... -..+|..|+.+ .+|.+++.+. ..+|.
T Consensus 299 L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 299 LTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKR-------SFRGCTSLSNI-NFPLSLRKIGANAFQGCI 366 (394)
T ss_dssp CCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCTTCCEE-CCCTTCCEECTTTBTTCT
T ss_pred cccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHH-------hccCCCCCCEE-EECccccEehHHHhhCCC
Confidence 88888865 3555553 2356777776432 3333321 12344444443 2455566663 45788
Q ss_pred CCCCCCc
Q 009084 281 TLSKPSP 287 (544)
Q Consensus 281 ~L~~~~~ 287 (544)
+|+.+..
T Consensus 367 ~L~~i~l 373 (394)
T 4fs7_A 367 NLKKVEL 373 (394)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 8877643
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=9.8e-06 Score=77.56 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=29.9
Q ss_pred CCCCCCEEEEeccCCCC---CChhccCCCCccEEEEeCccCCCCchhhcCCC--CccEEEecCCCCCC
Q 009084 95 GLSSLGLLRISYSAVME---IPQEIACLSSLTGLHLSGNNFESLPASIKQLS--RLRSLHLEDCKMLQ 157 (544)
Q Consensus 95 ~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~--~L~~L~L~~~~~l~ 157 (544)
++++|+.|+|++|.+.. +|..++.+++|+.|+|++|.++.+. .+..+. +|+.|+|++|+...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcc
Confidence 34455555555555444 2233444555555555555555442 233333 55555555555433
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.57 E-value=0.0093 Score=59.94 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCcEEEecCCCCcccCcc-cCCCCCccEEeeecCCCCCccCcc-cccCccCcEeEeecCCCccCCccCCCCCCccEEEE
Q 009084 2 EHLKRIYLGRTAITELPSS-FENLPGLEVLFVEDCSKLDKLPDN-IGNLKSLGHISAAGSAISQLPSSVADSNVLGILDF 79 (544)
Q Consensus 2 ~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 79 (544)
.+|+.+.+. ..++.++.. |.+|.+|+.+.|.. .++.+++. |.++ +|+.+.+.. .++.++.......+|+.+.+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEEC
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccC
Confidence 357777776 457777764 88999999999975 36666543 5555 677776643 35566554444457888887
Q ss_pred ecCCCCCccChhhhcCCCCCCEEEEeccCCCC-CChhccCCCCccEEEEeC
Q 009084 80 SSCKGLVSLPRSLLLGLSSLGLLRISYSAVME-IPQEIACLSSLTGLHLSG 129 (544)
Q Consensus 80 ~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~ 129 (544)
... +..+...++... +|+.+.+..+ +.. -...+..+.+++.+.+..
T Consensus 121 p~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 121 PGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred CCc--cccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 653 344444434333 4555554432 222 122344555566555543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.50 E-value=5e-05 Score=72.66 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=51.7
Q ss_pred ccCccCcEeEeecCCCccCC---ccCCCCCCccEEEEecCCCCCccChhhhcCCC--CCCEEEEeccCCCC-CC------
Q 009084 46 GNLKSLGHISAAGSAISQLP---SSVADSNVLGILDFSSCKGLVSLPRSLLLGLS--SLGLLRISYSAVME-IP------ 113 (544)
Q Consensus 46 ~~l~~L~~L~L~~~~l~~lp---~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~--~L~~L~l~~~~~~~-lp------ 113 (544)
.++++|+.|+|++|.|..++ ..+..+++|+.|+|++|. +..+.. +..+. +|++|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcCccccCcchhHH
Confidence 45677888888877777544 444567788888887766 444422 33333 78888888888764 44
Q ss_pred -hhccCCCCccEEE
Q 009084 114 -QEIACLSSLTGLH 126 (544)
Q Consensus 114 -~~l~~l~~L~~L~ 126 (544)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2356778888775
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.45 E-value=0.0065 Score=61.56 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=77.2
Q ss_pred CCcEEEecCCCCcccCcc-cCCCCCccEEeeecC--CCCCccCc-ccccCccCcEeEeecCCCccCCc-cCCCCCCccEE
Q 009084 3 HLKRIYLGRTAITELPSS-FENLPGLEVLFVEDC--SKLDKLPD-NIGNLKSLGHISAAGSAISQLPS-SVADSNVLGIL 77 (544)
Q Consensus 3 ~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c--~~l~~lp~-~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L 77 (544)
.|+.+.+.. .++.+... |.+|.+|+.+.+..+ ..++.++. .|.++.+|+.+.+..+ ++.++. .+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 478888875 37777654 889999999999764 23555544 3677888887776433 444443 45677888888
Q ss_pred EEecCCCCCccChhhhcCCCCCCEEEEeccCCCCCChhccCCCCccEEEEeC
Q 009084 78 DFSSCKGLVSLPRSLLLGLSSLGLLRISYSAVMEIPQEIACLSSLTGLHLSG 129 (544)
Q Consensus 78 ~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 129 (544)
.+.. .+..++...+..+.+|+.+.+..+ +..+....-...+|+.+.+..
T Consensus 143 ~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 143 TIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT
T ss_pred cccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEECC
Confidence 8754 245566655777777777777543 333333222234566665544
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.72 E-value=0.0057 Score=61.99 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=89.3
Q ss_pred ccCCCCCccEEeeecCCCCCccC-cccccCccCcEeEeecCCCccCCc-cCCCCCCccEEEEecCCCCCccChhhhcCCC
Q 009084 20 SFENLPGLEVLFVEDCSKLDKLP-DNIGNLKSLGHISAAGSAISQLPS-SVADSNVLGILDFSSCKGLVSLPRSLLLGLS 97 (544)
Q Consensus 20 ~l~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~ 97 (544)
.|.++.+|+.+.+.+. +..+. ..+.++.+|+.+.+. +.++.++. .+.++.+|+.+.+.. .++.+...+|.++.
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence 3778899999999763 33333 347889999999985 45666765 467889999999975 37788887799999
Q ss_pred CCCEEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCchhhcCCCCccEEEecCC
Q 009084 98 SLGLLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 98 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~ 153 (544)
+|+.+.+..+ +..+.. .|.++.+|+.+++.++... ...+...++|+.+.+..+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC--------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence 9999999754 666644 5889999999999987432 134556777888777544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.68 E-value=0.014 Score=58.55 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=72.9
Q ss_pred CCCCCccEEeeecCCCCCccCcccccCccCcEeEeecCCCccCC-ccCCCCCCccEEEEecCCCCCccChhhhcCCCCCC
Q 009084 22 ENLPGLEVLFVEDCSKLDKLPDNIGNLKSLGHISAAGSAISQLP-SSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLG 100 (544)
Q Consensus 22 ~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~ 100 (544)
.....+..+.+... ........+..+.+|+.+.+..+ +..+. ..+.++.+|+.+.+..+ +..+...++.++.+|+
T Consensus 191 ~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred cccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhc
Confidence 33445555554432 11122223555667777766433 33332 34556777777777543 5566665567777777
Q ss_pred EEEEeccCCCCCCh-hccCCCCccEEEEeCccCCCCch-hhcCCCCccEEEecC
Q 009084 101 LLRISYSAVMEIPQ-EIACLSSLTGLHLSGNNFESLPA-SIKQLSRLRSLHLED 152 (544)
Q Consensus 101 ~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L~~ 152 (544)
.+.+... +..++. .+..+.+|+.+.+.++.++.++. .+.++.+|+.+.|..
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 7777543 333333 46677777777777777766653 466777777777753
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.21 E-value=0.0066 Score=54.85 Aligned_cols=104 Identities=11% Similarity=0.143 Sum_probs=49.7
Q ss_pred CccCcEeEeecC-CCc-----cCCccCCCCCCccEEEEecCCCCCc-----cChhhhcCCCCCCEEEEeccCCCC-----
Q 009084 48 LKSLGHISAAGS-AIS-----QLPSSVADSNVLGILDFSSCKGLVS-----LPRSLLLGLSSLGLLRISYSAVME----- 111 (544)
Q Consensus 48 l~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l~~~~~~~----- 111 (544)
-+.|++|+|+++ .|. .+-..+..-+.|+.|+|++|. +++ +... +..-+.|+.|+|++|.+..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~a-L~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIEL-IETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHH-HHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHH-HhcCCccCeEecCCCcCCHHHHHH
Confidence 345555555543 443 123333444555666665554 222 1111 2233456666666666553
Q ss_pred CChhccCCCCccEEEEeCcc---CC-----CCchhhcCCCCccEEEecCC
Q 009084 112 IPQEIACLSSLTGLHLSGNN---FE-----SLPASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 112 lp~~l~~l~~L~~L~l~~~~---l~-----~lp~~l~~l~~L~~L~L~~~ 153 (544)
+-+.+..-+.|+.|+|+++. +. .+...+..-+.|+.|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 33444445556666665432 22 12233444455666666543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.68 E-value=0.041 Score=46.11 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred EeEeecCCCc--cCCccCCCCCCccEEEEecCCCCCccChhhhcCCCCCCEEEEeccC
Q 009084 53 HISAAGSAIS--QLPSSVADSNVLGILDFSSCKGLVSLPRSLLLGLSSLGLLRISYSA 108 (544)
Q Consensus 53 ~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~ 108 (544)
.++.+++.++ .+|..+. ++|+.|+|++|. +..++...+..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 3444444554 4553221 234555555543 444444434444455555554443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.32 E-value=0.02 Score=51.68 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCCCCccEEEEecCCCCCc-----cChhhhcCCCCCCEEEEeccCCCC-----CChhccCCCCccEEEEeCccCC-----
Q 009084 69 ADSNVLGILDFSSCKGLVS-----LPRSLLLGLSSLGLLRISYSAVME-----IPQEIACLSSLTGLHLSGNNFE----- 133 (544)
Q Consensus 69 ~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~----- 133 (544)
.+-+.|+.|+|+++..+.+ +... +..-..|+.|+|++|.+.+ +.+.+..-+.|++|+|+.|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 4456777888876533433 2222 4455677777777777664 4444555567777777777776
Q ss_pred CCchhhcCCCCccEEEecCC
Q 009084 134 SLPASIKQLSRLRSLHLEDC 153 (544)
Q Consensus 134 ~lp~~l~~l~~L~~L~L~~~ 153 (544)
.+-..+..-+.|+.|+|+++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 33344555556777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.68 E-value=0.1 Score=43.62 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=18.4
Q ss_pred cCcEeEeecCCCccCCcc-CCCCCCccEEEEecCC
Q 009084 50 SLGHISAAGSAISQLPSS-VADSNVLGILDFSSCK 83 (544)
Q Consensus 50 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~c~ 83 (544)
+|++|+|++|+|+.+|.. +..+++|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555555555555443 3345556666666554
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=80.36 E-value=0.57 Score=25.73 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=9.1
Q ss_pred cccCCCcccccc
Q 009084 526 EELEPSPKRICR 537 (544)
Q Consensus 526 ee~~~~~kr~~~ 537 (544)
||+||++||-|.
T Consensus 16 edeepprkrkrl 27 (28)
T 3ukw_C 16 EDEEPPRKRKRL 27 (28)
T ss_dssp GGGSCCSSCCCC
T ss_pred cccCcchhhhcc
Confidence 556899998763
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.04 E-value=46 Score=25.73 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCCCcccCcc-cCCCCCccEEeeecCCCCCccCc-ccccCccCcEeEeec
Q 009084 11 RTAITELPSS-FENLPGLEVLFVEDCSKLDKLPD-NIGNLKSLGHISAAG 58 (544)
Q Consensus 11 ~~~i~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~L~~ 58 (544)
+..++.+... |.+|.+|+.+.|-. .++.+.+ .|.++.+|+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3456666654 77888888888875 3444443 467777777777754
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.83 E-value=76 Score=24.41 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=5.0
Q ss_pred hcCCCCCCEEEE
Q 009084 93 LLGLSSLGLLRI 104 (544)
Q Consensus 93 ~~~l~~L~~L~l 104 (544)
|.++.+|+.+.+
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 344444444443
Done!