Citrus Sinensis ID: 009085

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
MASALLISLLSLSLLFSLSSSTSRRHHTPLQQQQQPPVPQIQLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWISTSS
cHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccHHcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHccccccccEEEEEEEcEEEEEEEEEccccccEEEEEcccccEEEEEccccccccccccccEEEEEEcccEEEEccEEEEcccccccEEEEEEEcccEEEEEccEEEcccccEEcccccEEEEccEEEEcccEEEccccEEEEccEEEEEccccccccccccEEEEcccccccccEEEEEEccEEEccccHHHHHcccccccccccccccccccEEEEEEccccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHcccccccccccccccccc
cHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHcccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEcccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccccccEEEEEccccccccccEEEEEccEEcccccccHcHcccccccccEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHcccccccccccccHHHHHHccHHHHHcccccccccc
MASALLISLLSLSLLFslssstsrrhhtplqqqqqppvpqiqlackatrfpdvcqqslsqshnvppnpspaqMIQSAIGVSSQNLETAKSMVKRILdsssdsqnRSRAATTCLQILGysgarsqsasdalprgklkDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFdnfgddfnawrapqteragfwekggsgaaqfgfrggfpskltagvtvckdgsckykTLQDAVnaapdnvpakRFVINIKagvyeetvrvpfekknVVFLGDGMGKTVITgslnvgqqgvstyesatvgvlgdgfmasgltiqntagpdahqavafrsdsdlsiienceflgnqdtLYAHSLRQFYKKCRIqgnvdfifgnspsifqdceilvaprqlkpekgennavtahgrtdpaqwsgfvfqnclinGTEEYMKLYYskprvhknylgrpwkeysRTVFIHCNLealvhpdgwlpwsgdfalktlyygefqntgpgsktanrvpwssqipaehvnaysvqnfiqgdewistss
MASALLISLLSLSLLFSLSSSTSRRHHtplqqqqqppvPQIQLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILdsssdsqnrSRAATTCLQILgysgarsqsasdalprGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAvnaapdnvpakRFVINIKAgvyeetvrvpfEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAhgrtdpaqwsgFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNfiqgdewistss
MAsallisllslsllfslssstsRRHHTplqqqqqppvpqiqLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWISTSS
**************************************************************************************************************TCLQILGY****************LKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAP*******************DPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNT*********VPWSSQIPAEHVNAYSVQNFIQGDEWI****
*ASALLISLLSLSLLFSLSS**********************LACKATRFPDVCQQ****************MIQSAIGVSSQNLETAK******************AATTCLQILGYSGARSQ************DARAWYSAALTYQYDCWSALKYV*****************GLTSNALSMMMS**************************************PSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWIS***
MASALLISLLSLSLLFSLS*******************PQIQLACKATRFPDVC***************PAQMIQSAIGVSSQNLETAKSMVK***************ATTCLQILGYS***************LKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWISTSS
MASALLISLLSLSLLFSLSSS**************PPVPQIQLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFN*********AGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI****
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oooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASALLISLLSLSLLFSLSSSTSRRHHTPLQQQQQPPVPQIQLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWISTSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query544 2.2.26 [Sep-21-2011]
Q9LXD9551 Probable pectinesterase/p yes no 0.928 0.916 0.714 0.0
Q8L7Q7602 Probable pectinesterase/p no no 0.972 0.878 0.640 0.0
O04887510 Pectinesterase 2 OS=Citru no no 0.906 0.966 0.380 6e-89
Q8GX86 669 Probable pectinesterase/p no no 0.941 0.765 0.346 1e-87
Q9FJ21571 Probable pectinesterase/p no no 0.935 0.891 0.336 6e-86
Q8GXA1568 Probable pectinesterase/p no no 0.854 0.818 0.352 1e-84
P83948584 Pectinesterase 3 OS=Citru no no 0.902 0.840 0.357 4e-84
O49006592 Pectinesterase/pectineste no no 0.900 0.827 0.363 1e-82
O04886584 Pectinesterase 1 OS=Citru no no 0.908 0.845 0.361 4e-82
Q3E8Z8 732 Putative pectinesterase/p no no 0.943 0.700 0.329 5e-82
>sp|Q9LXD9|PME51_ARATH Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1 Back     alignment and function desciption
 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/508 (71%), Positives = 410/508 (80%), Gaps = 3/508 (0%)

Query: 40  QIQLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSS 99
           QI+LAC ATR+PD C  SLS+   VPP+P P Q+I SAI  S QNL+TA+S +K I+DSS
Sbjct: 44  QIRLACNATRYPDQCVSSLSEQGRVPPDPKPIQIIHSAISFSFQNLKTAQSKIKSIVDSS 103

Query: 100 SDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYV 159
             + NR+ AA TCLQ+L YS  R+QS   AL RGK+KDARAW SAAL YQYD WSALKYV
Sbjct: 104 VGNLNRTNAANTCLQLLTYSEHRTQSTDQALTRGKIKDARAWMSAALVYQYDSWSALKYV 163

Query: 160 NDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAA- 218
           NDT QVGETM+FLD L  +TSNALSMM+S+DNFGD+  +W  P TER GFWEK G G   
Sbjct: 164 NDTSQVGETMSFLDGLIHVTSNALSMMVSYDNFGDNVASWTYPATERDGFWEKTGPGLGL 223

Query: 219 --QFGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETV 276
               G   GFPS L   VTVCKDG C YKT+QDAVNAAP++   ++FVI I  GVYEE V
Sbjct: 224 DPSTGLNLGFPSGLKEDVTVCKDGKCGYKTVQDAVNAAPEDNGMRKFVIKISEGVYEENV 283

Query: 277 RVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGP 336
            VPFEKKNVVF+GDGMGKTVITGSLN G  G++TY +ATVGV+GDGFMA  LT QNTAGP
Sbjct: 284 IVPFEKKNVVFIGDGMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDLTFQNTAGP 343

Query: 337 DAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQD 396
           DAHQAVAFRSDSD S+IENCEFLGNQDTLYAH LRQFYK CRIQGNVDFIFGNS ++FQD
Sbjct: 344 DAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQD 403

Query: 397 CEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKN 456
           CEIL+APRQ+ PEKGE NAVTA GR DP+Q +GFVF NCLINGTEEYMKL+ + P+VHKN
Sbjct: 404 CEILIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKN 463

Query: 457 YLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPW 516
           +LGRPWK+YSRTVFI CNLEAL+ PDGWLPWSGDFALKTLYYGE +NTGPGS  + RV W
Sbjct: 464 FLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSW 523

Query: 517 SSQIPAEHVNAYSVQNFIQGDEWISTSS 544
           SSQIP EHV+ YSV NFIQ DEW S S+
Sbjct: 524 SSQIPDEHVHVYSVANFIQADEWASMSA 551
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8L7Q7|PME64_ARATH Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function description
>sp|Q9FJ21|PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXA1|PME23_ARATH Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
224093384564 predicted protein [Populus trichocarpa] 0.948 0.914 0.718 0.0
255552390552 Pectinesterase-2 precursor, putative [Ri 0.961 0.947 0.699 0.0
15242495551 Putative pectinesterase/pectinesterase i 0.928 0.916 0.714 0.0
9759007577 pectin methylesterase-like protein [Arab 0.928 0.875 0.714 0.0
359477033 697 PREDICTED: probable pectinesterase/pecti 0.930 0.725 0.715 0.0
297807001579 hypothetical protein ARALYDRAFT_325521 [ 0.935 0.879 0.699 0.0
225431519553 PREDICTED: probable pectinesterase/pecti 0.935 0.920 0.701 0.0
224080949558 predicted protein [Populus trichocarpa] 0.952 0.928 0.693 0.0
449459282567 PREDICTED: probable pectinesterase/pecti 0.924 0.887 0.728 0.0
119507463575 pectin methylesterase 2 [Pyrus communis] 0.928 0.878 0.709 0.0
>gi|224093384|ref|XP_002309906.1| predicted protein [Populus trichocarpa] gi|222852809|gb|EEE90356.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/536 (71%), Positives = 434/536 (80%), Gaps = 20/536 (3%)

Query: 27  HTPLQQQQQP-----------PVPQIQLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQ 75
           H P +Q+Q+P             P+I  ACKATRF D C  SLS   NVP NP+P Q+IQ
Sbjct: 31  HHPTKQKQKPRPNVPPSSASTTPPEILQACKATRFQDTCVSSLSNP-NVPRNPTPLQIIQ 89

Query: 76  SAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGAR-SQSASDALPRGK 134
           SAI VS+ NL+TA+SMVK ILDSS+ + NR+ AA  C++ L  S  R ++S  DALPRG+
Sbjct: 90  SAISVSNTNLKTAQSMVKSILDSSTGNINRTTAAKNCVEALINSQYRITRSTDDALPRGR 149

Query: 135 LKDARAWYSAALTYQYDCWSALKYVNDT--KQVGETMAFLDSLTGLTSNALSMMMSFDNF 192
           +KDARAW  AAL YQYDC +ALKY NDT  K V ET+ FL+SL GLTSNALSM +S+D F
Sbjct: 150 VKDARAWMGAALLYQYDCSNALKYANDTTSKPVNETLLFLESLVGLTSNALSMTVSYDLF 209

Query: 193 GDDFNAWRAPQTERAGFWEKGGSGAAQFGFRGGFPSKLTAGVTVCKDGS----CKYKTLQ 248
           G++  +WR PQTER GFWE     + +  FRGGFPSKL A  TVCKD S    C YKT+Q
Sbjct: 210 GNETESWRPPQTERDGFWEDSVLDSVRGFFRGGFPSKLKADATVCKDESKDNGC-YKTVQ 268

Query: 249 DAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGV 308
           +AVNAAPDN   +RFVI+IK GVYEE VRVPFEKKNVVFLGDGMGK+VITGSL+VGQ GV
Sbjct: 269 EAVNAAPDNAMDRRFVIHIKEGVYEEIVRVPFEKKNVVFLGDGMGKSVITGSLSVGQIGV 328

Query: 309 STYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAH 368
           +TYESATVGVLGDGFMASGLTIQNTAG   HQAVAFRSDSDLSIIENCEFLGNQDTLYAH
Sbjct: 329 TTYESATVGVLGDGFMASGLTIQNTAGAPTHQAVAFRSDSDLSIIENCEFLGNQDTLYAH 388

Query: 369 SLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWS 428
           SLRQFYK C I+GNVDFIFGNS +IFQDC+IL+ PRQ KPEKGENNAVTAHGRTDPAQ +
Sbjct: 389 SLRQFYKSCHIEGNVDFIFGNSAAIFQDCQILIRPRQEKPEKGENNAVTAHGRTDPAQST 448

Query: 429 GFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWS 488
           GFVFQNCLINGTEEYM LY SKP VHKN+LGRPWKE+SRTVFIHCNLEAL+ P GW+PWS
Sbjct: 449 GFVFQNCLINGTEEYMALYRSKPSVHKNFLGRPWKEFSRTVFIHCNLEALLTPQGWMPWS 508

Query: 489 GDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWISTSS 544
           GDFALKTLYYGEF+N+GPGS ++ RV WSSQIPAEHV  YSVQ+FIQGDEWI TSS
Sbjct: 509 GDFALKTLYYGEFENSGPGSDSSQRVTWSSQIPAEHVATYSVQHFIQGDEWIPTSS 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552390|ref|XP_002517239.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223543610|gb|EEF45139.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15242495|ref|NP_196538.1| Putative pectinesterase/pectinesterase inhibitor 51 [Arabidopsis thaliana] gi|75180831|sp|Q9LXD9.1|PME51_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 51; Includes: RecName: Full=Pectinesterase inhibitor 51; AltName: Full=Pectin methylesterase inhibitor 51; Includes: RecName: Full=Pectinesterase 51; Short=PE 51; AltName: Full=Pectin methylesterase 51; Short=AtPME51; Flags: Precursor gi|7671413|emb|CAB89354.1| pectin methylesterase-like protein [Arabidopsis thaliana] gi|17979183|gb|AAL49830.1| putative pectin methylesterase [Arabidopsis thaliana] gi|29824167|gb|AAP04044.1| putative pectin methylesterase [Arabidopsis thaliana] gi|332004060|gb|AED91443.1| Putative pectinesterase/pectinesterase inhibitor 51 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9759007|dbj|BAB09534.1| pectin methylesterase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359477033|ref|XP_002281640.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807001|ref|XP_002871384.1| hypothetical protein ARALYDRAFT_325521 [Arabidopsis lyrata subsp. lyrata] gi|297317221|gb|EFH47643.1| hypothetical protein ARALYDRAFT_325521 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225431519|ref|XP_002275192.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224080949|ref|XP_002306241.1| predicted protein [Populus trichocarpa] gi|222855690|gb|EEE93237.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459282|ref|XP_004147375.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|119507463|dbj|BAF42039.1| pectin methylesterase 2 [Pyrus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
TAIR|locus:2144806551 AT5G09760 [Arabidopsis thalian 0.922 0.911 0.714 1.6e-198
TAIR|locus:2174794602 AT5G64640 [Arabidopsis thalian 0.922 0.833 0.669 2.7e-187
TAIR|locus:2078057 669 AT3G05610 [Arabidopsis thalian 0.873 0.710 0.367 2.5e-81
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.562 0.516 0.489 6.5e-81
TAIR|locus:2155884571 AT5G49180 [Arabidopsis thalian 0.878 0.837 0.354 6.8e-79
TAIR|locus:2083308568 AT3G06830 [Arabidopsis thalian 0.884 0.846 0.351 7.9e-78
TAIR|locus:2143340 732 AT5G27870 [Arabidopsis thalian 0.875 0.650 0.346 2.1e-77
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.553 0.525 0.477 5.2e-77
TAIR|locus:2125949525 PME44 "pectin methylesterase 4 0.556 0.577 0.471 4.6e-76
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.897 0.831 0.371 6.3e-76
TAIR|locus:2144806 AT5G09760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1922 (681.6 bits), Expect = 1.6e-198, P = 1.6e-198
 Identities = 361/505 (71%), Positives = 407/505 (80%)

Query:    43 LACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDS 102
             LAC ATR+PD C  SLS+   VPP+P P Q+I SAI  S QNL+TA+S +K I+DSS  +
Sbjct:    47 LACNATRYPDQCVSSLSEQGRVPPDPKPIQIIHSAISFSFQNLKTAQSKIKSIVDSSVGN 106

Query:   103 QNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDT 162
              NR+ AA TCLQ+L YS  R+QS   AL RGK+KDARAW SAAL YQYD WSALKYVNDT
Sbjct:   107 LNRTNAANTCLQLLTYSEHRTQSTDQALTRGKIKDARAWMSAALVYQYDSWSALKYVNDT 166

Query:   163 KQVGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAA---Q 219
              QVGETM+FLD L  +TSNALSMM+S+DNFGD+  +W  P TER GFWEK G G      
Sbjct:   167 SQVGETMSFLDGLIHVTSNALSMMVSYDNFGDNVASWTYPATERDGFWEKTGPGLGLDPS 226

Query:   220 FGFRGGFPSKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVP 279
              G   GFPS L   VTVCKDG C YKT+QDAVNAAP++   ++FVI I  GVYEE V VP
Sbjct:   227 TGLNLGFPSGLKEDVTVCKDGKCGYKTVQDAVNAAPEDNGMRKFVIKISEGVYEENVIVP 286

Query:   280 FEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAH 339
             FEKKNVVF+GDGMGKTVITGSLN G  G++TY +ATVGV+GDGFMA  LT QNTAGPDAH
Sbjct:   287 FEKKNVVFIGDGMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDLTFQNTAGPDAH 346

Query:   340 QAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEI 399
             QAVAFRSDSD S+IENCEFLGNQDTLYAH LRQFYK CRIQGNVDFIFGNS ++FQDCEI
Sbjct:   347 QAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEI 406

Query:   400 LVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLG 459
             L+APRQ+ PEKGE NAVTA GR DP+Q +GFVF NCLINGTEEYMKL+ + P+VHKN+LG
Sbjct:   407 LIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLG 466

Query:   460 RPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQ 519
             RPWK+YSRTVFI CNLEAL+ PDGWLPWSGDFALKTLYYGE +NTGPGS  + RV WSSQ
Sbjct:   467 RPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQ 526

Query:   520 IPAEHVNAYSVQNFIQGDEWISTSS 544
             IP EHV+ YSV NFIQ DEW S S+
Sbjct:   527 IPDEHVHVYSVANFIQADEWASMSA 551
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2174794 AT5G64640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155884 AT5G49180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083308 AT3G06830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125949 PME44 "pectin methylesterase 44" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LXD9PME51_ARATH3, ., 1, ., 1, ., 1, 10.71450.92830.9165yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VII1401
pectinesterase family protein (EC-3.1.1.11) (564 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_IX000478
hypothetical protein (217 aa)
  •     0.492

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-166
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-126
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-121
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-116
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-114
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-109
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-109
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-108
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-108
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-103
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-102
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-101
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-100
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-99
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 7e-98
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 3e-97
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 2e-85
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 4e-84
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 5e-84
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 7e-81
PLN02197588 PLN02197, PLN02197, pectinesterase 8e-76
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 8e-64
PLN02304379 PLN02304, PLN02304, probable pectinesterase 4e-63
PLN02671359 PLN02671, PLN02671, pectinesterase 5e-62
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-60
PLN02432293 PLN02432, PLN02432, putative pectinesterase 2e-60
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-57
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-57
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 5e-54
PLN02634359 PLN02634, PLN02634, probable pectinesterase 9e-54
PLN02176340 PLN02176, PLN02176, putative pectinesterase 5e-45
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 2e-43
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-24
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-24
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-20
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 8e-13
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  980 bits (2535), Expect = 0.0
 Identities = 411/553 (74%), Positives = 452/553 (81%), Gaps = 9/553 (1%)

Query: 1   MASALLISLLSLSLLFSLSSSTSRRHHTPLQQQQQPPV------PQIQLACKATRFPDVC 54
           MAS LL+ LLSL L  S SSS++R HH        PP       PQI LAC ATRFPD C
Sbjct: 1   MASLLLLLLLSLLLFHSPSSSSNRHHHHHTPSPSPPPPSSPSTPPQILLACNATRFPDTC 60

Query: 55  QQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQ 114
             SLS +  VPP+P P Q+IQSAI VS +NL+TA+SMVK ILDSS+ + NR+ AAT CL+
Sbjct: 61  VSSLSNAGRVPPDPKPIQIIQSAISVSRENLKTAQSMVKSILDSSAGNVNRTTAATNCLE 120

Query: 115 ILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDS 174
           +L  S  R  S   ALPRGK+KDARAW SAAL YQYDCWSALKYVNDT QV +TM+FLDS
Sbjct: 121 VLSNSEHRISSTDIALPRGKIKDARAWMSAALLYQYDCWSALKYVNDTSQVNDTMSFLDS 180

Query: 175 LTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGFWEKGGSGAAQ---FGFRGGFPSKLT 231
           L GLTSNALSMM S+D FGDD  +WR P+TER GFWE  G G       GF+ G PS LT
Sbjct: 181 LIGLTSNALSMMASYDIFGDDTGSWRPPKTERDGFWEPSGPGLGSDSGLGFKLGVPSGLT 240

Query: 232 AGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDG 291
             VTVCKDG+C YKT+Q+AVNAAPDN   ++FVI IK GVYEETVRVP EKKNVVFLGDG
Sbjct: 241 PDVTVCKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEETVRVPLEKKNVVFLGDG 300

Query: 292 MGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLS 351
           MGKTVITGSLNVGQ G+STY +ATVGVLGDGFMA  LTIQNTAGPDAHQAVAFRSDSDLS
Sbjct: 301 MGKTVITGSLNVGQPGISTYNTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLS 360

Query: 352 IIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKG 411
           +IENCEFLGNQDTLYAHSLRQFYK CRIQGNVDFIFGNS ++FQDC IL+APRQLKPEKG
Sbjct: 361 VIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAVFQDCAILIAPRQLKPEKG 420

Query: 412 ENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFI 471
           ENNAVTAHGRTDPAQ +GFVFQNCLINGTEEYMKLY S P+VHKN+LGRPWKEYSRTVFI
Sbjct: 421 ENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFI 480

Query: 472 HCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQ 531
            CNLEAL+ P GW+PWSGDFALKTLYYGEF+N+GPGS  + RV WSSQIPAEHV+ YSV 
Sbjct: 481 GCNLEALITPQGWMPWSGDFALKTLYYGEFENSGPGSNLSQRVTWSSQIPAEHVDVYSVA 540

Query: 532 NFIQGDEWISTSS 544
           NFIQGDEWI TSS
Sbjct: 541 NFIQGDEWIPTSS 553

Length = 553
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 544
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.96
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.93
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.46
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.94
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.85
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.75
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.35
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.18
PLN03003456 Probable polygalacturonase At3g15720 97.41
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.38
PLN02793443 Probable polygalacturonase 97.26
KOG1777 625 consensus Putative Zn-finger protein [General func 97.11
PLN03010409 polygalacturonase 96.89
PLN02218431 polygalacturonase ADPG 96.89
PLN02155394 polygalacturonase 96.58
PLN02682369 pectinesterase family protein 96.37
PRK10531422 acyl-CoA thioesterase; Provisional 96.36
PLN02480343 Probable pectinesterase 95.92
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.74
PLN02671359 pectinesterase 95.73
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.61
PLN02773317 pectinesterase 95.54
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.52
PLN02432293 putative pectinesterase 95.44
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.44
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.06
PLN02176340 putative pectinesterase 95.06
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.99
PLN02665366 pectinesterase family protein 94.63
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.61
PLN02197588 pectinesterase 94.5
PLN02497331 probable pectinesterase 94.48
PLN02634359 probable pectinesterase 94.47
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.34
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.18
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.12
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.04
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.89
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.79
PLN02916502 pectinesterase family protein 93.71
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.67
smart00656190 Amb_all Amb_all domain. 93.61
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.59
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.58
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.5
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.44
PLN02314586 pectinesterase 93.42
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.36
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.29
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.2
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 93.15
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.0
PLN02304379 probable pectinesterase 92.95
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 92.84
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.81
PLN02301548 pectinesterase/pectinesterase inhibitor 92.65
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.47
smart00722146 CASH Domain present in carbohydrate binding protei 91.75
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 91.52
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 90.32
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 88.69
PLN02188404 polygalacturonase/glycoside hydrolase family prote 84.99
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 84.89
PLN02218431 polygalacturonase ADPG 84.57
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 83.95
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 83.16
PLN02793443 Probable polygalacturonase 80.02
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2e-125  Score=1027.01  Aligned_cols=527  Identities=75%  Similarity=1.197  Sum_probs=458.3

Q ss_pred             HHHHhhhccccccCCCCCCCCC-------CCChhHHHcccCCCCChhchHHHhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 009085           13 SLLFSLSSSTSRRHHTPLQQQQ-------QPPVPQIQLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNL   85 (544)
Q Consensus        13 ~l~l~~~~~~~~~~~~~~~~~~-------~~~~~~I~~~C~~T~yp~lC~~sL~s~p~s~~~~d~~~L~~iai~~a~~~a   85 (544)
                      +||+++++....+|++.....|       ..++..|+..|+.|+||++|+++|++++......++.+|++++|++++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~C~~T~YP~lC~sSLs~~~~~~~~~~p~~Li~aAL~vsl~~a   91 (553)
T PLN02708         12 LLLFHSPSSSSNRHHHHHTPSPSPPPPSSPSTPPQILLACNATRFPDTCVSSLSNAGRVPPDPKPIQIIQSAISVSRENL   91 (553)
T ss_pred             HHHHhccccccCcccccCCCCCCCCCccCCCccHHHHHhccCCCCcHHHHHHHhhccCCccCCCHHHHHHHHHHHHHHHH
Confidence            4555555444434544333332       245678999999999999999999998843222689999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHHHHHHhhccCCC-ccc
Q 009085           86 ETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVND-TKQ  164 (544)
Q Consensus        86 ~~a~~~i~~ll~~~~~~~~~k~aL~dC~e~y~daid~L~~A~~al~~~~~~d~~twLSAAlt~~~TC~DgF~~~~~-~~~  164 (544)
                      ..+...+++++.....+...+.||+||+|+|++++++|++++.+|....++|++|||||||||++||.|||.+.+. +.+
T Consensus        92 ~~a~~~v~~L~~~~~~~~~~~~AL~DC~ELlddavd~L~~Sl~~L~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~v  171 (553)
T PLN02708         92 KTAQSMVKSILDSSAGNVNRTTAATNCLEVLSNSEHRISSTDIALPRGKIKDARAWMSAALLYQYDCWSALKYVNDTSQV  171 (553)
T ss_pred             HHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhccHhHHHHHhhccCccchH
Confidence            9999999988754323334458999999999999999999999998889999999999999999999999986542 234


Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhhccCcCCcccccCCCCCccccc-------cccCCCCCcccCccCCCCCCCcceEEEc
Q 009085          165 VGETMAFLDSLTGLTSNALSMMMSFDNFGDDFNAWRAPQTERAGF-------WEKGGSGAAQFGFRGGFPSKLTAGVTVC  237 (544)
Q Consensus       165 ~~~l~~~~~~~~~L~snaLAi~~~l~~~~~~~~~~~~~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~i~V~  237 (544)
                      +..| ..+.++.+|+||+|||++.+..++.++..|.+.....+||       |  ++..+  ||||++.+....++++|+
T Consensus       172 ~~~~-~~L~nvs~LtSNSLAmv~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~--~~ll~~~~~~~~~~~~Va  246 (553)
T PLN02708        172 NDTM-SFLDSLIGLTSNALSMMASYDIFGDDTGSWRPPKTERDGFWEPSGPGL--GSDSG--LGFKLGVPSGLTPDVTVC  246 (553)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhhhcccccccccccccCcccccccccccCCccc--cchhh--hHHhhcCcccCCccEEEC
Confidence            4445 6789999999999999999877666666554433233466       5  56667  888765555677899999


Q ss_pred             CCCCCCCccHHHHHHHCCCCCCCceEEEEEccceecceeeecccccceEEEecCCCceEEecccccccCCCCccCeeEEE
Q 009085          238 KDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVG  317 (544)
Q Consensus       238 ~dg~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~ItL~G~~~~~tiI~~~~~~~~~g~~t~~satv~  317 (544)
                      +||+|+|+|||+||+++|+++.++|++|+|+||+|+|+|.|++.|++|+|+|+|.++|+|+++.+...+|++|+.++||.
T Consensus       247 ~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~  326 (553)
T PLN02708        247 KDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVG  326 (553)
T ss_pred             CCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEEeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEE
Confidence            99999999999999999994327899999999999999999999999999999999999999988765788999999999


Q ss_pred             EEcCcEEEEceEEeeCCCCCCccceeeeecccceEEEeeEEecCcceeeecccceeeeccEEEccceeEecCCCceeeec
Q 009085          318 VLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDC  397 (544)
Q Consensus       318 v~a~~~~~~~lti~N~~~~~~~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~gr~~~~~c~I~G~vDfIfG~~~a~fe~c  397 (544)
                      |.+++|+++||||+|++|+.++|||||++.+|+++||||+|+|||||||++++||||++|+|+|+||||||+|+++||+|
T Consensus       327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~avfq~c  406 (553)
T PLN02708        327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAVFQDC  406 (553)
T ss_pred             EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceEEEEcc
Confidence            99999999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCCCCCCceEEecCCCCCCCceeEEEEcceeccccchhhhccCCCCcceeEeeccCCCCCcEEEEcccCCc
Q 009085          398 EILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEA  477 (544)
Q Consensus       398 ~i~~~~~~~~~~~g~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~~~~~~  477 (544)
                      +|+++.+..++..|+.++||||+|+++++++||||+||+|++++++.++|...+..+++||||||++|+|||||+|+|++
T Consensus       407 ~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~  486 (553)
T PLN02708        407 AILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLEA  486 (553)
T ss_pred             EEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCCcccccccccccccceeeecCCCCcceEEEEecccCC
Confidence            99999765455667789999999999999999999999999998764344444445679999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCcceEEEEecccCCCCCCCCccccCCCCCHHHHhcccccccccCCCCCCCCC
Q 009085          478 LVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWISTSS  544 (544)
Q Consensus       478 ~i~p~Gw~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~w~~~l~~~~a~~~~~~~~~~g~~W~~~~~  544 (544)
                      +|.|+||.+|++++.+++++|+||+|+||||++++||+|+++|+.+||++|++.+||+|++|+|.|.
T Consensus       487 ~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~s~Rv~w~~~l~~~~a~~ft~~~fi~g~~W~p~t~  553 (553)
T PLN02708        487 LITPQGWMPWSGDFALKTLYYGEFENSGPGSNLSQRVTWSSQIPAEHVDVYSVANFIQGDEWIPTSS  553 (553)
T ss_pred             eEcCccccccCCCCCCCceEEEEeecccCCCCccCCccccccCCHHHHHhhhHHhccCCCCCCCCCC
Confidence            9999999999998889999999999999999999999999999999999999999999999999984

>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 3e-80
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-75
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-16
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-16
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-15
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-14
3grh_A422 Crystal Structure Of Escherichia Coli Ybhc Length = 7e-07
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 152/314 (48%), Positives = 194/314 (61%), Gaps = 13/314 (4%)
Query: 234 VTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMG 293
           V V  DGS  YKT+ +AV AAP++    R+VI IKAGVY E V VP +KKN++FLGDG  
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPED-SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67
Query: 294 KTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSII 353
            T+IT S NV Q G +T+ SATV  +G GF+A  +T QNTAG   HQAVA R  SDLS  
Sbjct: 68  STIITASKNV-QDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126
Query: 354 ENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPEKGEN 413
             C+ L  QD+LY HS RQF+  C I G VDFIFGN+  + QDC+I       +P  G+ 
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI----HARRPGSGQK 182
Query: 414 NAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHC 473
           N VTA GRTDP Q +G V Q   I  T +   +  S P     YLGRPWKEYSRTV +  
Sbjct: 183 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFP----TYLGRPWKEYSRTVVMQS 238
Query: 474 NLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSS---QIPAEHVNAYSV 530
           ++  +++P GW PW G+FAL TLYYGE+QNTG G+ T+ RV W        +     ++ 
Sbjct: 239 SITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTP 298
Query: 531 QNFIQGDEWISTSS 544
            +FI G  W+  ++
Sbjct: 299 GSFIAGGSWLKATT 312
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-152
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-152
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-122
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-119
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-102
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 6e-24
1x91_A153 Invertase/pectin methylesterase inhibitor family p 9e-24
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 4e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  438 bits (1129), Expect = e-152
 Identities = 145/318 (45%), Positives = 187/318 (58%), Gaps = 13/318 (4%)

Query: 230 LTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLG 289
           + A   V +DG+  Y+TL +AV AAPD     R+VI +K G Y+E V V   K N++ +G
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDK-SKTRYVIYVKRGTYKENVEVASNKMNLMIVG 59

Query: 290 DGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSD 349
           DGM  T ITGSLNV   G +T+ SAT+  +G GF+   + IQNTAGP   QAVA R  +D
Sbjct: 60  DGMYATTITGSLNVVD-GSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGAD 118

Query: 350 LSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLKPE 409
           +S+I  C     QDTLYAHS RQFY+   + G VDFIFGN+  +FQ C+++      KP 
Sbjct: 119 MSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVA----RKPG 174

Query: 410 KGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTV 469
           K + N VTA GRTDP Q +G   Q C I  + +   +          YLGRPWKEYSRTV
Sbjct: 175 KYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKE----FPTYLGRPWKEYSRTV 230

Query: 470 FIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIP---AEHVN 526
            +   L  L++P GW  W GDFALKTLYYGEF N GPG+ T+ RV W             
Sbjct: 231 VMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAM 290

Query: 527 AYSVQNFIQGDEWISTSS 544
            ++V   IQG  W+ ++ 
Sbjct: 291 PFTVAKLIQGGSWLRSTG 308
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.97
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.7
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.49
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.01
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.23
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.01
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.84
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.71
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.66
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.62
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.58
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.48
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.32
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.32
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.26
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.23
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.21
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.17
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.91
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.64
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.63
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.46
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.42
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.32
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.3
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.18
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.99
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.59
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.56
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.54
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.41
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.39
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.39
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.1
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.06
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.03
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.5
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 91.06
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 90.38
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 89.7
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 89.66
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 89.4
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 88.66
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 87.55
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 86.94
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 86.65
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 86.63
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 86.39
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 85.34
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 84.02
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 84.01
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.1e-85  Score=673.64  Aligned_cols=304  Identities=48%  Similarity=0.850  Sum_probs=283.8

Q ss_pred             cceEEEcCCCCCCCccHHHHHHHCCCCCCCceEEEEEccceecceeeecccccceEEEecCCCceEEecccccccCCCCc
Q 009085          231 TAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVST  310 (544)
Q Consensus       231 ~~~i~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~ItL~G~~~~~tiI~~~~~~~~~g~~t  310 (544)
                      .++++|++||+|+|+|||+||++||+++ ++|++|+|+||+|+|+|.|++.|++|||+|++.++|+|+++.+.. +|.+|
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~-~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~-~g~~t   79 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKS-KTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVV-DGSTT   79 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSC-SSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTT-TTCCS
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCC-CceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEeccccc-CCCcc
Confidence            4689999999999999999999999998 899999999999999999998889999999999999999988755 78899


Q ss_pred             cCeeEEEEEcCcEEEEceEEeeCCCCCCccceeeeecccceEEEeeEEecCcceeeecccceeeeccEEEccceeEecCC
Q 009085          311 YESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNS  390 (544)
Q Consensus       311 ~~satv~v~a~~~~~~~lti~N~~~~~~~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~gr~~~~~c~I~G~vDfIfG~~  390 (544)
                      +.++||.|.+++|+++||||+|++++.++||+||++.+|++.|++|+|+|+|||||++++||||++|+|+|+||||||++
T Consensus        80 ~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~  159 (317)
T 1xg2_A           80 FRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNA  159 (317)
T ss_dssp             GGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECC
T ss_pred             cceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCc
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeecEEEeecCCCCCCCCCCceEEecCCCCCCCceeEEEEcceeccccchhhhccCCCCcceeEeeccCCCCCcEEE
Q 009085          391 PSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVF  470 (544)
Q Consensus       391 ~a~fe~c~i~~~~~~~~~~~g~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~~~~yLGRpW~~~~~~v~  470 (544)
                      .++||+|+|+++    ++..|+.++||||+|+++.+++||||+||+|++++++    .++...+++||||||++|+||||
T Consensus       160 ~avf~~c~i~~~----~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~----~~~~~~~~~yLGRpW~~~sr~v~  231 (317)
T 1xg2_A          160 AVVFQKCQLVAR----KPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDL----EPVLKEFPTYLGRPWKEYSRTVV  231 (317)
T ss_dssp             EEEEESCEEEEC----CCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTT----GGGTTTSCEEEECCSSTTCEEEE
T ss_pred             eEEEeeeEEEEe----ccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCc----cccccceeEEeecccCCCceEEE
Confidence            999999999998    4445677999999999999999999999999998765    22223347999999999999999


Q ss_pred             EcccCCccccCCCCCCCCCCCCCcceEEEEecccCCCCCCCCccccCC--CC-CHHHHhcccccccccCCCCCCCCC
Q 009085          471 IHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSS--QI-PAEHVNAYSVQNFIQGDEWISTSS  544 (544)
Q Consensus       471 ~~~~~~~~i~p~Gw~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~w~~--~l-~~~~a~~~~~~~~~~g~~W~~~~~  544 (544)
                      ++|+|+++|+|+||.+|++++++++++|+||+|+|||+++++||+|++  +| +++||++|+..+||+|++|+|.++
T Consensus       232 ~~t~~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~  308 (317)
T 1xg2_A          232 MESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTG  308 (317)
T ss_dssp             ESCEECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGC
T ss_pred             EecccCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCC
Confidence            999999999999999999988889999999999999999999999998  55 579999999999999988999764
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 544
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-126
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 6e-86
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 1e-20
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 5e-18
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 2e-05
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 3e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  371 bits (953), Expect = e-126
 Identities = 152/320 (47%), Positives = 195/320 (60%), Gaps = 13/320 (4%)

Query: 228 SKLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVF 287
           S +   V V  DGS  YKT+ +AV AAP++    R+VI IKAGVY E V VP +KKN++F
Sbjct: 3   STVGPNVVVAADGSGDYKTVSEAVAAAPED-SKTRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 288 LGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSD 347
           LGDG   T+IT S NV Q G +T+ SATV  +G GF+A  +T QNTAG   HQAVA R  
Sbjct: 62  LGDGRTSTIITASKNV-QDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 348 SDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFQDCEILVAPRQLK 407
           SDLS    C+ L  QD+LY HS RQF+  C I G VDFIFGN+  + QDC+        +
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCD----IHARR 176

Query: 408 PEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSR 467
           P  G+ N VTA GRTDP Q +G V Q   I  T +   +  S P     YLGRPWKEYSR
Sbjct: 177 PGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFP----TYLGRPWKEYSR 232

Query: 468 TVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSS---QIPAEH 524
           TV +  ++  +++P GW PW G+FAL TLYYGE+QNTG G+ T+ RV W        +  
Sbjct: 233 TVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTE 292

Query: 525 VNAYSVQNFIQGDEWISTSS 544
              ++  +FI G  W+  ++
Sbjct: 293 AQGFTPGSFIAGGSWLKATT 312
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.96
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.18
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.92
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.26
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.82
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.58
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.37
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.06
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.49
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.48
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.92
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.87
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.86
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.35
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.29
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.07
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.71
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.7
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 94.18
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 89.49
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 87.3
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 86.84
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 84.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 82.46
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 80.66
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=3.8e-89  Score=696.36  Aligned_cols=306  Identities=49%  Similarity=0.881  Sum_probs=287.1

Q ss_pred             CCcceEEEcCCCCCCCccHHHHHHHCCCCCCCceEEEEEccceecceeeecccccceEEEecCCCceEEecccccccCCC
Q 009085          229 KLTAGVTVCKDGSCKYKTLQDAVNAAPDNVPAKRFVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGV  308 (544)
Q Consensus       229 ~~~~~i~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~ItL~G~~~~~tiI~~~~~~~~~g~  308 (544)
                      ..+++++|++||+|+|+|||+|||++|.++ ++|++|+|+||+|+|+|+|++.|++|||+|++++.|+|+++.+.. ++.
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~-~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~-~~~   81 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDS-KTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQ-DGS   81 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSC-SSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTT-TTC
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCC-CCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEeccccc-CCC
Confidence            467889999999999999999999999998 999999999999999999999999999999999999999988765 678


Q ss_pred             CccCeeEEEEEcCcEEEEceEEeeCCCCCCccceeeeecccceEEEeeEEecCcceeeecccceeeeccEEEccceeEec
Q 009085          309 STYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFG  388 (544)
Q Consensus       309 ~t~~satv~v~a~~~~~~~lti~N~~~~~~~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~gr~~~~~c~I~G~vDfIfG  388 (544)
                      +|+.++||.+.+++|+++||||+|++++.++||+||++.+|++.|++|+|+|+|||||+++|||||++|+|+|+||||||
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG  161 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG  161 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEec
Confidence            89999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeecEEEeecCCCCCCCCCCceEEecCCCCCCCceeEEEEcceeccccchhhhccCCCCcceeEeeccCCCCCcE
Q 009085          389 NSPSIFQDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRT  468 (544)
Q Consensus       389 ~~~a~fe~c~i~~~~~~~~~~~g~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~~~~yLGRpW~~~~~~  468 (544)
                      +++++||+|+|+++    ++..|..++||||+|+.+.+++||||.+|+|++++++    .+.....++||||||++|++|
T Consensus       162 ~~~a~f~~c~i~~~----~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~----~~~~~~~~~yLGRpW~~~s~v  233 (319)
T d1gq8a_         162 NAAVVLQDCDIHAR----RPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDL----QPVQSSFPTYLGRPWKEYSRT  233 (319)
T ss_dssp             SCEEEEESCEEEEC----CCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTT----GGGGGGSCEEEECCSSTTCEE
T ss_pred             CceeEeecceeeee----cCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCc----cccccccceeccCCCCCcceE
Confidence            99999999999998    4455677899999999999999999999999999875    233334568999999999999


Q ss_pred             EEEcccCCccccCCCCCCCCCCCCCcceEEEEecccCCCCCCCCccccCC---CCCHHHHhcccccccccCCCCCCCCC
Q 009085          469 VFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSS---QIPAEHVNAYSVQNFIQGDEWISTSS  544 (544)
Q Consensus       469 v~~~~~~~~~i~p~Gw~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~w~~---~l~~~~a~~~~~~~~~~g~~W~~~~~  544 (544)
                      ||++|+|++||.|+||.+|++.+++++++|+||+|+|||+++++||+|++   +|+++||++|+.++||+|++|+|.|+
T Consensus       234 vf~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~  312 (319)
T d1gq8a_         234 VVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATT  312 (319)
T ss_dssp             EEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGT
T ss_pred             EEEecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCC
Confidence            99999999999999999999988899999999999999999999999984   78999999999999999989999874
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure