Query 009090
Match_columns 544
No_of_seqs 166 out of 2095
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 18:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 5.9E-67 2E-71 554.5 42.8 443 31-544 8-466 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.8E-66 6.2E-71 549.2 41.4 451 19-544 3-461 (536)
3 1v25_A Long-chain-fatty-acid-C 100.0 5.3E-66 1.8E-70 546.0 44.2 432 40-544 16-462 (541)
4 3rix_A Luciferase, luciferin 4 100.0 4.6E-66 1.6E-70 547.8 41.0 445 35-544 13-466 (550)
5 3o83_A Peptide arylation enzym 100.0 5.5E-66 1.9E-70 546.2 40.6 429 41-544 29-466 (544)
6 3etc_A AMP-binding protein; ad 100.0 2.9E-65 9.8E-70 543.5 44.3 437 37-544 51-502 (580)
7 3r44_A Fatty acyl COA syntheta 100.0 1.6E-65 5.3E-70 539.3 40.6 426 39-544 13-440 (517)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.6E-65 5.5E-70 542.0 38.3 425 41-544 24-457 (539)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.4E-64 5E-69 530.8 40.9 418 41-544 1-429 (504)
10 2d1s_A Luciferase, luciferin 4 100.0 6.6E-64 2.3E-68 530.4 43.4 434 41-544 24-468 (548)
11 3c5e_A Acyl-coenzyme A synthet 100.0 1.2E-63 4.3E-68 530.2 43.9 433 38-544 34-483 (570)
12 3ivr_A Putative long-chain-fat 100.0 3.6E-64 1.2E-68 528.7 38.9 421 39-544 3-427 (509)
13 4fuq_A Malonyl COA synthetase; 100.0 1.6E-64 5.3E-69 529.9 35.9 420 46-544 4-426 (503)
14 4gr5_A Non-ribosomal peptide s 100.0 3.3E-64 1.1E-68 535.6 37.4 409 39-544 72-496 (570)
15 2v7b_A Benzoate-coenzyme A lig 100.0 9.6E-64 3.3E-68 527.9 39.8 433 37-544 19-456 (529)
16 4dg8_A PA1221; ANL superfamily 100.0 2E-63 6.9E-68 532.2 39.9 407 40-544 25-446 (620)
17 1pg4_A Acetyl-COA synthetase; 100.0 2.1E-63 7.1E-68 536.4 40.2 445 40-544 74-544 (652)
18 3rg2_A Enterobactin synthase c 100.0 7E-63 2.4E-67 530.0 39.9 428 40-544 25-461 (617)
19 1ry2_A Acetyl-coenzyme A synth 100.0 5.8E-63 2E-67 533.2 38.6 447 40-544 80-553 (663)
20 1amu_A GRSA, gramicidin synthe 100.0 9.3E-63 3.2E-67 522.7 38.7 408 40-544 37-457 (563)
21 3e7w_A D-alanine--poly(phospho 100.0 6.7E-63 2.3E-67 519.0 35.9 411 42-544 1-425 (511)
22 3fce_A D-alanine--poly(phospho 100.0 3.5E-63 1.2E-67 521.6 33.6 412 42-544 1-426 (512)
23 3tsy_A Fusion protein 4-coumar 100.0 8.6E-63 2.9E-67 556.1 38.2 467 9-544 32-508 (979)
24 3l8c_A D-alanine--poly(phospho 100.0 1.1E-62 3.7E-67 519.1 34.9 413 41-544 3-430 (521)
25 3ipl_A 2-succinylbenzoate--COA 100.0 8.6E-63 2.9E-67 517.3 32.5 421 43-544 2-425 (501)
26 3gqw_A Fatty acid AMP ligase; 100.0 1.4E-61 4.9E-66 517.4 40.4 433 31-544 10-488 (576)
27 3kxw_A Saframycin MX1 syntheta 100.0 9.4E-62 3.2E-66 520.1 34.4 427 39-543 8-485 (590)
28 3nyq_A Malonyl-COA ligase; A/B 100.0 5.9E-62 2E-66 510.3 31.3 409 39-544 19-433 (505)
29 3ite_A SIDN siderophore synthe 100.0 1.6E-61 5.4E-66 514.8 34.4 425 37-540 15-450 (562)
30 2vsq_A Surfactin synthetase su 100.0 1.1E-58 3.8E-63 535.2 42.3 411 41-544 463-888 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 4.9E-58 1.7E-62 479.1 32.1 404 37-514 19-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.1E-39 3.7E-44 325.5 19.0 242 219-544 36-280 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.9E-38 6.6E-43 326.4 21.8 266 216-544 81-358 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 8.7E-38 3E-42 321.6 24.5 266 216-544 86-360 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 9.8E-38 3.3E-42 321.8 22.9 266 216-544 88-362 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 4E-28 1.4E-32 243.8 18.8 236 217-521 88-365 (369)
37 4eql_A 4-substituted benzoates 98.8 1.1E-07 3.8E-12 98.1 16.6 134 383-539 297-447 (581)
38 4b2g_A GH3-1 auxin conjugating 98.7 2.8E-07 9.7E-12 95.2 16.7 133 383-538 302-458 (609)
39 4epl_A Jasmonic acid-amido syn 98.6 7.6E-07 2.6E-11 91.7 15.2 136 381-538 300-453 (581)
40 2y27_A Phenylacetate-coenzyme 91.7 1.5 5E-05 43.8 12.4 107 55-164 88-198 (437)
41 2y4o_A Phenylacetate-coenzyme 91.6 1.5 5.2E-05 43.8 12.4 105 56-164 91-200 (443)
42 3qov_A Phenylacetate-coenzyme 89.6 1.4 4.9E-05 43.9 10.0 105 57-164 86-194 (436)
43 3ipl_A 2-succinylbenzoate--COA 85.9 10 0.00034 38.4 13.9 121 55-181 161-284 (501)
44 3hgu_A EHPF; phenazine, antibi 80.1 8.1 0.00028 37.2 10.0 106 55-164 89-221 (369)
45 1mdb_A 2,3-dihydroxybenzoate-A 75.5 39 0.0013 34.3 14.1 121 55-181 180-308 (539)
46 3g7s_A Long-chain-fatty-acid-- 73.5 38 0.0013 34.5 13.4 107 218-328 32-140 (549)
47 2d1s_A Luciferase, luciferin 4 71.9 19 0.00065 36.9 10.6 121 57-181 192-319 (548)
48 3ni2_A 4-coumarate:COA ligase; 71.3 29 0.00098 35.3 11.8 101 218-328 35-137 (536)
49 3ivr_A Putative long-chain-fat 70.7 27 0.00093 35.2 11.4 98 218-327 19-118 (509)
50 3o83_A Peptide arylation enzym 70.4 36 0.0012 34.7 12.3 120 56-181 190-317 (544)
51 1v25_A Long-chain-fatty-acid-C 70.0 45 0.0015 33.9 12.9 101 218-326 31-133 (541)
52 3rix_A Luciferase, luciferin 4 68.1 16 0.00055 37.4 9.1 88 238-328 49-138 (550)
53 3t5a_A Long-chain-fatty-acid-- 68.1 52 0.0018 32.6 12.8 107 218-328 37-148 (480)
54 4gr5_A Non-ribosomal peptide s 67.7 28 0.00096 35.7 10.9 122 55-182 212-337 (570)
55 3r44_A Fatty acyl COA syntheta 67.2 35 0.0012 34.5 11.4 119 56-181 169-294 (517)
56 4dg8_A PA1221; ANL superfamily 67.2 36 0.0012 35.4 11.6 122 55-182 162-287 (620)
57 3fce_A D-alanine--poly(phospho 66.5 37 0.0013 34.2 11.4 121 56-181 143-271 (512)
58 4gs5_A Acyl-COA synthetase (AM 65.2 13 0.00044 35.7 7.2 120 54-181 34-158 (358)
59 3e7w_A D-alanine--poly(phospho 63.4 57 0.0019 32.8 12.0 121 56-181 142-270 (511)
60 3tbh_A O-acetyl serine sulfhyd 62.5 31 0.0011 32.7 9.2 66 92-157 61-127 (334)
61 1t5h_X 4-chlorobenzoyl COA lig 62.5 57 0.002 32.7 11.8 98 218-325 15-116 (504)
62 1amu_A GRSA, gramicidin synthe 62.0 63 0.0021 33.0 12.2 95 218-324 52-148 (563)
63 1ry2_A Acetyl-coenzyme A synth 61.5 59 0.002 34.1 12.0 99 218-322 95-196 (663)
64 4fuq_A Malonyl COA synthetase; 61.1 41 0.0014 33.8 10.4 86 238-326 27-114 (503)
65 3rg2_A Enterobactin synthase c 59.5 1E+02 0.0036 31.7 13.5 121 56-182 183-313 (617)
66 3etc_A AMP-binding protein; ad 57.9 84 0.0029 32.2 12.3 98 218-322 69-168 (580)
67 3c5e_A Acyl-coenzyme A synthet 57.5 1.1E+02 0.0037 31.3 13.0 103 218-326 56-160 (570)
68 2v7b_A Benzoate-coenzyme A lig 56.7 47 0.0016 33.6 10.1 87 238-327 47-135 (529)
69 3kxw_A Saframycin MX1 syntheta 54.8 99 0.0034 31.6 12.3 101 218-326 24-129 (590)
70 1pg4_A Acetyl-COA synthetase; 54.7 82 0.0028 32.9 11.7 98 218-321 89-188 (652)
71 3vc3_A Beta-cyanoalnine syntha 49.5 73 0.0025 30.2 9.4 64 94-157 78-142 (344)
72 3nyq_A Malonyl-COA ligase; A/B 47.8 1.2E+02 0.004 30.4 11.2 103 55-164 153-259 (505)
73 3tsy_A Fusion protein 4-coumar 47.6 49 0.0017 36.6 9.0 99 218-326 74-174 (979)
74 3l8c_A D-alanine--poly(phospho 46.7 91 0.0031 31.3 10.3 81 238-321 28-110 (521)
75 3ezx_A MMCP 1, monomethylamine 43.0 1.4E+02 0.0049 25.9 9.6 90 264-403 91-195 (215)
76 4eez_A Alcohol dehydrogenase 1 42.9 67 0.0023 30.3 8.1 76 77-155 137-215 (348)
77 3ite_A SIDN siderophore synthe 40.7 1.8E+02 0.0063 29.3 11.6 99 218-321 33-135 (562)
78 3gqw_A Fatty acid AMP ligase; 39.7 1.6E+02 0.0055 29.8 11.0 87 237-326 47-142 (576)
79 1z7w_A Cysteine synthase; tran 38.9 1.3E+02 0.0044 28.0 9.3 65 93-157 57-122 (322)
80 4aec_A Cysteine synthase, mito 38.3 1.3E+02 0.0043 29.6 9.2 63 94-156 166-229 (430)
81 2vsq_A Surfactin synthetase su 37.8 95 0.0032 35.6 9.5 122 55-182 605-731 (1304)
82 2q3b_A Cysteine synthase A; py 36.5 1.6E+02 0.0053 27.3 9.4 64 93-157 58-122 (313)
83 2egu_A Cysteine synthase; O-ac 34.5 1.7E+02 0.0057 27.0 9.2 64 93-157 56-120 (308)
84 4h1h_A LMO1638 protein; MCCF-l 34.2 1.3E+02 0.0044 28.2 8.3 60 97-156 8-86 (327)
85 2jtq_A Phage shock protein E; 33.3 98 0.0033 21.9 5.9 46 75-127 22-67 (85)
86 3ijw_A Aminoglycoside N3-acety 32.1 78 0.0027 28.8 6.0 25 87-111 18-42 (268)
87 3sr3_A Microcin immunity prote 31.4 1.5E+02 0.0053 27.9 8.3 61 97-157 9-88 (336)
88 3two_A Mannitol dehydrogenase; 31.4 1.2E+02 0.0042 28.4 7.9 73 77-153 150-225 (348)
89 3tqh_A Quinone oxidoreductase; 31.1 1.1E+02 0.0038 28.3 7.4 74 77-155 126-203 (321)
90 2pqm_A Cysteine synthase; OASS 30.5 1.7E+02 0.0058 27.5 8.6 64 93-157 69-133 (343)
91 3s2e_A Zinc-containing alcohol 30.4 1.5E+02 0.0051 27.7 8.3 76 77-156 140-218 (340)
92 1h2b_A Alcohol dehydrogenase; 29.9 1.5E+02 0.0051 28.1 8.2 63 91-156 175-239 (359)
93 1ve1_A O-acetylserine sulfhydr 29.2 2.4E+02 0.0081 25.9 9.3 64 93-157 51-117 (304)
94 3tla_A MCCF; serine protease, 28.9 1.7E+02 0.0057 28.1 8.1 60 97-156 39-117 (371)
95 1ofu_X SULA, hypothetical prot 28.8 1.7E+02 0.0057 22.8 6.7 51 89-139 46-98 (119)
96 3ist_A Glutamate racemase; str 27.6 1.8E+02 0.006 26.4 7.7 63 46-115 19-81 (269)
97 4e5s_A MCCFLIKE protein (BA_56 27.5 1.9E+02 0.0064 27.2 8.1 60 97-156 8-86 (331)
98 3dwg_A Cysteine synthase B; su 27.3 2.4E+02 0.0082 26.2 9.0 64 93-157 64-128 (325)
99 3jv7_A ADH-A; dehydrogenase, n 27.3 1.7E+02 0.0058 27.4 8.0 64 91-157 160-225 (345)
100 2ayi_A Aminopeptidase T; metal 26.8 1.2E+02 0.0042 29.5 6.8 51 82-132 4-58 (408)
101 2cf5_A Atccad5, CAD, cinnamyl 26.5 1.4E+02 0.0046 28.3 7.2 62 92-156 171-233 (357)
102 1zsy_A Mitochondrial 2-enoyl t 26.5 1.7E+02 0.0058 27.6 7.9 78 77-155 140-223 (357)
103 3ju7_A Putative PLP-dependent 26.0 1.5E+02 0.0052 28.2 7.5 59 93-154 70-135 (377)
104 1y80_A Predicted cobalamin bin 25.5 2.5E+02 0.0085 24.0 8.2 57 101-157 88-148 (210)
105 4ej6_A Putative zinc-binding d 25.1 1.6E+02 0.0054 28.0 7.4 59 92-154 174-233 (370)
106 3lzd_A DPH2; diphthamide biosy 25.0 1.1E+02 0.0037 29.4 5.9 76 16-112 17-92 (378)
107 3goh_A Alcohol dehydrogenase, 24.8 2.4E+02 0.0083 25.8 8.5 73 76-153 115-190 (315)
108 1zjc_A Aminopeptidase AMPS; me 24.4 1.1E+02 0.0038 29.8 6.1 51 82-132 7-61 (418)
109 3sma_A FRBF; N-acetyl transfer 24.3 55 0.0019 30.1 3.6 29 75-110 20-48 (286)
110 1oft_A SULA, hypothetical prot 24.1 1.8E+02 0.0063 24.0 6.4 52 89-140 88-141 (161)
111 2nyg_A YOKD protein; PFAM02522 23.8 57 0.0019 29.8 3.6 24 88-111 17-40 (273)
112 3fpc_A NADP-dependent alcohol 23.3 1.7E+02 0.0057 27.6 7.1 60 92-155 158-218 (352)
113 1uuf_A YAHK, zinc-type alcohol 23.0 1.7E+02 0.006 27.7 7.2 61 91-155 185-245 (369)
114 1yqd_A Sinapyl alcohol dehydro 22.7 2.5E+02 0.0084 26.6 8.3 62 92-156 178-240 (366)
115 3l6b_A Serine racemase; pyrido 22.5 1.3E+02 0.0045 28.4 6.1 58 100-158 75-132 (346)
116 1eg5_A Aminotransferase; PLP-d 22.5 2.5E+02 0.0084 26.2 8.3 7 100-106 88-94 (384)
117 1o69_A Aminotransferase; struc 21.3 3.2E+02 0.011 25.8 8.9 57 97-156 68-130 (394)
118 3qwb_A Probable quinone oxidor 21.0 4.9E+02 0.017 23.9 10.2 59 93-155 140-200 (334)
119 3ri6_A O-acetylhomoserine sulf 20.6 3.1E+02 0.011 26.7 8.6 58 105-162 100-160 (430)
120 2jfz_A Glutamate racemase; cel 20.4 1.5E+02 0.0051 26.5 5.8 49 47-98 15-63 (255)
121 1pl8_A Human sorbitol dehydrog 20.3 2.5E+02 0.0084 26.4 7.7 59 93-155 164-223 (356)
122 3n75_A LDC, lysine decarboxyla 20.1 4.6E+02 0.016 27.6 10.2 93 33-147 186-292 (715)
123 1gu7_A Enoyl-[acyl-carrier-pro 20.1 1.9E+02 0.0064 27.3 6.8 78 77-155 139-223 (364)
124 1y7l_A O-acetylserine sulfhydr 20.1 3.6E+02 0.012 24.8 8.6 64 93-157 53-117 (316)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.9e-67 Score=554.48 Aligned_cols=443 Identities=21% Similarity=0.256 Sum_probs=362.0
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCC--CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 009090 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYG 108 (544)
Q Consensus 31 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~ 108 (544)
..++|..+.+..++.++|+++++++|+++|+++. +. ..+..+++||+||.++++++|++|++.|+++||+|++++
T Consensus 8 ~~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 84 (549)
T 3g7s_A 8 KIGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCI 84 (549)
T ss_dssp CCCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 3456666677889999999999999999999987 42 234457899999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHH
Q 009090 109 ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188 (544)
Q Consensus 109 ~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (544)
+|++++++++|||+++|++++|++|.++.+++.++|+.++++++|++......+....... ....++..+..
T Consensus 85 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------ 156 (549)
T 3g7s_A 85 PNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------ 156 (549)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS------
T ss_pred CCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC------
Confidence 9999999999999999999999999999999999999999999999988766654433221 23444444321
Q ss_pred HHhhCCceeeeHHHHHhcccccccccCCCC-CCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCc
Q 009090 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267 (544)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d 267 (544)
..++.++....... ....... ++++++|+|||||||.||||.++|+++.+.+..+...+ ++.++|
T Consensus 157 --------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d 222 (549)
T 3g7s_A 157 --------VNSLSEVMDSGSED-FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMD 222 (549)
T ss_dssp --------SSCHHHHHHHSCSC-CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTC
T ss_pred --------CcCHHHHHhcCccc-cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCC
Confidence 23455555443222 1222333 48999999999999999999999999999998887776 788999
Q ss_pred EEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 268 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
+++..+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+.......
T Consensus 223 ~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------- 291 (549)
T 3g7s_A 223 TIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK----------- 291 (549)
T ss_dssp EEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----------
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----------
Confidence 99999999999998887778999999999876 999999999999999999999999998764332100
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHh----cC---CceEEeecccc
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTE 419 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~i~~~YG~tE 419 (544)
.. ..+++|.+++||+++++++.+++.+. ++ +.+++.||+||
T Consensus 292 ------------------------~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 339 (549)
T 3g7s_A 292 ------------------------TY--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339 (549)
T ss_dssp ------------------------CC--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGG
T ss_pred ------------------------cC--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccc
Confidence 00 12489999999999999999999988 66 88999999999
Q ss_pred ccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc---cCC--c
Q 009090 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--W 494 (544)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~---~~g--~ 494 (544)
++.+++...........++|+|+++++++|++ +++ ..+++.|+.|||+|+|+.++.||+++++.+.+.| .+| |
T Consensus 340 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~ 417 (549)
T 3g7s_A 340 ACPMVTTNPPLRLDKSTTQGVPMSDIELKVIS-LED-GRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKF 417 (549)
T ss_dssp GSSEEEECCGGGGGGTTSCCEECTTCEEEEEC-SSS-CCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEE
T ss_pred cchhhhcCCccccCcCCCccccCCCCEEEEEe-CCC-CcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCce
Confidence 99988877665545568999999999999998 333 3466788999999999999999999999999998 678 9
Q ss_pred cccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 495 ~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|||+|++|+||++++.||.||+|++ +|++|+|.|||++|.+||+|+|
T Consensus 418 ~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 466 (549)
T 3g7s_A 418 FRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMD 466 (549)
T ss_dssp EEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEE
T ss_pred EccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeee
Confidence 999999999999999999999999997 8999999999999999999864
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.8e-66 Score=549.15 Aligned_cols=451 Identities=26% Similarity=0.343 Sum_probs=369.6
Q ss_pred CCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCC
Q 009090 19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl 98 (544)
|.+..+|++......+| ...++.++|.++++++|+++|+++. ++ + +++||+||.++++++|++|++.|+
T Consensus 3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv 71 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGI 71 (536)
T ss_dssp --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCC
Confidence 34556777766443333 3478999999999999999999864 22 2 689999999999999999999999
Q ss_pred CCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEE
Q 009090 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178 (544)
Q Consensus 99 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (544)
++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+....... .. .++.
T Consensus 72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~ 148 (536)
T 3ni2_A 72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC 148 (536)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence 99999999999999999999999999999999999999999999999999999999988766554433211 22 3344
Q ss_pred ecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhc
Q 009090 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258 (544)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~ 258 (544)
++.... ....+.++...... ..+.....++++++++|||||||.||||++||+++.+.+....... .
T Consensus 149 ~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~ 215 (536)
T 3ni2_A 149 VDSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-N 215 (536)
T ss_dssp SSCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-S
T ss_pred ecCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-c
Confidence 433211 24456666543322 2233456789999999999999999999999999988876543321 1
Q ss_pred ccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHh
Q 009090 259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (544)
Q Consensus 259 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~ 336 (544)
....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----- 290 (536)
T 3ni2_A 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD----- 290 (536)
T ss_dssp CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC-----
T ss_pred ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc-----
Confidence 1125778999999999999999865 6678999999999876 99999999999999999999999988754211
Q ss_pred hchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEee
Q 009090 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY 415 (544)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~Y 415 (544)
....+ +++||.+++||+++++++.+++++.+ ++.+++.|
T Consensus 291 --------------------------------~~~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 291 --------------------------------LDKHD--------LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp --------------------------------GGGSC--------CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred --------------------------------cccCC--------CccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 11112 24899999999999999999999999 89999999
Q ss_pred ccccccCceeecc----CCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-
Q 009090 416 GLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (544)
Q Consensus 416 G~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~- 490 (544)
|+||++.+++.+. .......+++|+|+++++++|+| +++ ..+++.|+.|||+|+|+.++.||+++|+.+.+.|
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~ 408 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PET-GASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCC-CcCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence 9999998766542 11233457899999999999998 433 3566788999999999999999999999999999
Q ss_pred cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 491 ~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+|||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.+||+|+|
T Consensus 409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 461 (536)
T 3ni2_A 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISD 461 (536)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEE
T ss_pred CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 7899999999999999999999999999998 7999999999999999999974
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.3e-66 Score=545.97 Aligned_cols=432 Identities=25% Similarity=0.329 Sum_probs=350.2
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3468999999999999999999864 22 234789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++|+.++++++|++.+....+.... ........++.++.... .....
T Consensus 91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~ 159 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLA 159 (541)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEE
T ss_pred HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------ccccc
Confidence 99999999999999999999999999999999999987765543322 12233444555443211 01335
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhh--hhhhhcccCCCCCCcEEEEecChHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
++++...... .....++++++++|||||||.||||++||+++....... ...+ .++++|++++.+|++|
T Consensus 160 ~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 160 YEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFH 230 (541)
T ss_dssp HHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTS
T ss_pred HHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchh
Confidence 5555432211 134467899999999999999999999999998766542 2222 6789999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......
T Consensus 231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------- 289 (541)
T 1v25_A 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG--------------------- 289 (541)
T ss_dssp HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT---------------------
T ss_pred hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC---------------------
Confidence 9998777788999999999864 89999999999999999999999999876433211
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC----
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
..+++||.+++||+++++++.++| +.+|+++++.||+||++.+++......
T Consensus 290 ------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~ 344 (541)
T 1v25_A 290 ------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344 (541)
T ss_dssp ------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTT
T ss_pred ------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccc
Confidence 112489999999999999999999 667999999999999998877654331
Q ss_pred ------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-CCccccCceEEEc
Q 009090 432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504 (544)
Q Consensus 432 ------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~ 504 (544)
....+++|+|+|+++++|+| +++...+.+.++.|||+|+||.++.||+++|+.+.+.|. +|||+|||+|++|
T Consensus 345 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d 423 (541)
T 1v25_A 345 LSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 423 (541)
T ss_dssp SCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred cCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEc
Confidence 12347899999999999999 665544443447899999999999999999999999994 9999999999999
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||++++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 424 ~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 462 (541)
T 1v25_A 424 EEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKE 462 (541)
T ss_dssp TTCCEEEEEESSCEEEE-TTEEEEHHHHHCC---------
T ss_pred CCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceE
Confidence 99999999999999997 8999999999999999999975
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.6e-66 Score=547.78 Aligned_cols=445 Identities=26% Similarity=0.310 Sum_probs=333.4
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH
Q 009090 35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (544)
Q Consensus 35 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~ 114 (544)
+..+....|+.++|.++++++|+++|++... ++..+ +++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4555667899999999999999999986320 22222 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCC
Q 009090 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (544)
Q Consensus 115 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (544)
++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+..... .......++..+.... .
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~ 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD---------Y 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC---------B
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc---------c
Confidence 99999999999999999999999999999999999999999987766544332 2234455555543211 1
Q ss_pred ceeeeHHHHHhccccc-----cc-ccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcE
Q 009090 195 IKPYSWDEFLHLGKVN-----EM-EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (544)
Q Consensus 195 ~~~~~~~~l~~~~~~~-----~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (544)
....++.++....... .. +.....++++++++|||||||.||+|.++|+++...+......+ ....+.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 1234455555432211 11 11122457899999999999999999999999988876654431 1125778999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 009090 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (544)
Q Consensus 269 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (544)
+++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+..
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------- 299 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------- 299 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence 9999999999999888888999999999876 9999999999999999999999999876421
Q ss_pred HHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCc-eEEeeccccccCceee
Q 009090 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV 426 (544)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-i~~~YG~tE~~~~~~~ 426 (544)
.....++ ++||.+++||+++++++.++|++.++.. +++.||+||+++.++.
T Consensus 300 --------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 300 --------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp --------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred --------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 1111122 4899999999999999999999999875 9999999999988877
Q ss_pred ccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEcc
Q 009090 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (544)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~ 505 (544)
...... ..+++|+|+|+++++|++ +++ ..+++.|+.|||+|+|+.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVD-LDT-GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEe-CCC-CcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 665443 448999999999999999 333 3566788999999999999999999999999999 799999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 466 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFD 466 (550)
T ss_dssp TCCEEEC--------------------------------
T ss_pred CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999999999997 8999999999999999999975
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.5e-66 Score=546.21 Aligned_cols=429 Identities=15% Similarity=0.181 Sum_probs=332.3
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..|+.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876531 111111112233344444443211
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
...+.++...............++++++++|||||||.||||+++|+++...+......+ ++.++|++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332222222445789999999999999999999999999999998887776 789999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 304 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD------------------ 304 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc------------------
Confidence 9999874 6678999999999876 999999999999999999999999988764332111
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
++ ++||.+++||+++++++.+++++.+++.+++.||+||++..++........
T Consensus 305 -------------------~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 305 -------------------QI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -------------------HH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------cC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 11 389999999999999999999999999999999999988555443333333
Q ss_pred ccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEE
Q 009090 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~ 511 (544)
...++|+|+ ++++++|+| +++ .+++.|+.|||+|+||.++.||+++|+.+.+.| .+|||+|||+|++|+||++++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQY--REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCC--CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 447899996 899999998 444 456778999999999999999999999999999 799999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 466 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMH 466 (544)
T ss_dssp EEEEC----------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccE
Confidence 9999999996 8999999999999999999975
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.9e-65 Score=543.55 Aligned_cols=437 Identities=17% Similarity=0.169 Sum_probs=361.5
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
.|..++.+.++|+++|+++|+++|+++. + .++..+++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~-~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~ 126 (580)
T 3etc_A 51 VPENFNFAYDVVDVYARDSPEKLAMIWC---D-DYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY 126 (580)
T ss_dssp CCSSCCHHHHTHHHHHHHCTTCEEEEEE---E-SSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred CcccchHHHHHHHHHHhhCCCCEEEEEE---c-CCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence 4466788889999999999999999986 3 34556899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh--hHhhcccccccccc-cEEEEecCCchHHHHHHhhC
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQT 193 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 193 (544)
++|||+++|++++|+++.++.+++.++|+.++++++|++.+.. ..+..... ..... ..++.++...
T Consensus 127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 195 (580)
T 3etc_A 127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV---------- 195 (580)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------
T ss_pred HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------
Confidence 9999999999999999999999999999999999999987654 33322221 11222 3344443221
Q ss_pred CceeeeHHHHHhccccccccc---CCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEE
Q 009090 194 GIKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (544)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (544)
.....++.+............ ....++++++++|||||||.||+|.++|.+++..+......+ .+..+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 270 (580)
T 3etc_A 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHY 270 (580)
T ss_dssp CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEE
T ss_pred ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEE
Confidence 112445666554332211111 245789999999999999999999999999888776644443 678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 271 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
+..|+.|..+.+. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---------------- 334 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---------------- 334 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------
Confidence 9999999888775 5667899999988742 8999999999999999999999998875420
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceee
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 426 (544)
... ..+++||.+++||+++++++.++|++.+|+++++.||+||++..++.
T Consensus 335 ----------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 335 ----------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ----------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred ----------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence 011 12248999999999999999999999999999999999999877665
Q ss_pred ccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec-----CCccccccCChhhhhhcccCCccccCceE
Q 009090 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (544)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~-----~~v~~gy~~~~~~~~~~~~~g~~~TGDlg 501 (544)
.+.. ....+++|+|+|+++++|+| +++ .+++.|+.|||+|+| +.++.||+++|+.+.+.|.+|||+|||+|
T Consensus 385 ~~~~-~~~~~~~G~p~~~~~v~ivd-~~g--~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg 460 (580)
T 3etc_A 385 FPWM-EPKPGSIGKPTPGYKIELMD-RDG--RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA 460 (580)
T ss_dssp CTTS-CCCTTCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEE
T ss_pred CCCC-CCCCCccccCCCCCEEEEEC-CCC--CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEE
Confidence 5433 34458999999999999999 554 456778999999997 78999999999999999999999999999
Q ss_pred EEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 502 ~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 461 ~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~ 502 (580)
T 3etc_A 461 WMDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLE 502 (580)
T ss_dssp EECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred EECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeee
Confidence 99999999999999999998 6999999999999999999964
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.6e-65 Score=539.34 Aligned_cols=426 Identities=23% Similarity=0.325 Sum_probs=354.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
+...|+.++|+++++++|+++|+++. +. .+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 46789999999999999999999865 22 258999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++|+.++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987765543322111 11111111110 01
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.+.+..... ....+.....++++++++|||||||.||||++||+++.+.+......+ ++.++|+++..+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333222 112233455789999999999999999999999999999998877766 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009090 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (544)
+++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 279 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------ 279 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence 999876666669999999876 9999999999999999999999999886532211
Q ss_pred cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-ccccC
Q 009090 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (544)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~ 436 (544)
...++++|.+++||+++++++.++|.+. ++.+++.||+||+++.++...... ....+
T Consensus 280 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 280 ---------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp ---------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred ---------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 1123489999999999999999999987 999999999999998776654433 44558
Q ss_pred ccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeecc
Q 009090 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (544)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~ 516 (544)
++|+|.+++++++++ +++. +++.| .|||+|+|+.++.||+++|+.+.+.|.+|||+|||+|++|+||++++.||.|
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 899999999999998 4443 34445 7999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCceechHhHHHHhhcCCCccC
Q 009090 517 NLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 517 d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|++ +|++|+|.|||++|.+||+|+|
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 440 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSE 440 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeE
Confidence 99997 8999999999999999999974
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.6e-65 Score=542.00 Aligned_cols=425 Identities=20% Similarity=0.196 Sum_probs=349.6
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++|++|.++.+++.++++.++++++|++++... ..........+..+.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111111122333343333211
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
.+.++.... ..........++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011111111 111122345678999999999999999999999999999988877666 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 6778999999999876 89999999999999999999999998875432110
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
..+++||.+++||+++++++.++|++.+|+.+++.||+||++..+.........
T Consensus 295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 112489999999999999999999999999999999999965333221111122
Q ss_pred ccCccCcCccC-ceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEE
Q 009090 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 434 ~~~~~G~~~~~-~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~ 511 (544)
..+++|+|+++ .+++|+| +++ .+++.|+.|||+|+||.++.||+++++.+.+.| .+|||+|||+|++|+||++++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCC--CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 4899998 443 456778999999999999999999999999999 699999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.||+|++ +|++|+|.|||++|.+||+|+|
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 457 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHD 457 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEE
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999996 8999999999999999999964
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.4e-64 Score=530.79 Aligned_cols=418 Identities=21% Similarity=0.264 Sum_probs=342.7
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
++|+.++|+++++++|+++|+++. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999853 211 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEE--ccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|+++|++++|++|.++.+++.++++.++++++|+ +......+.... ...+ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 665544331111 1111 22
Q ss_pred eHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCC--CCCcEEEEe
Q 009090 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (544)
Q Consensus 199 ~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (544)
.++++..... ..........++++++++|||||||.||||.+||+++.+.+..+...+ ++ .++|++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222221110 111111345678999999999999999999999999998887766555 55 789999999
Q ss_pred cChHHHHHHH-HHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 009090 273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (544)
Q Consensus 273 ~p~~~~~g~~-~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
+|++|.+++. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 9999999985 47778999999999876 8999999999999999999999999886532100
Q ss_pred HHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC
Q 009090 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (544)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 430 (544)
... ..+++||.+++||+++++++.++|++.++..+++.||+||++ .+....
T Consensus 266 ------------------~~~--------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSS--------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp ------------------TCC--------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred ------------------ccc--------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 000 012489999999999999999999999999999999999993 333222
Q ss_pred CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEe-cCCccccccCChhhhhhcccCCccccCceEEEccCCcE
Q 009090 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (544)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~-~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l 509 (544)
....+++|.|.+++++++++.+.....+++.|+.|||+|+ |+.++.||+++|+.+.+.|.+|||+|||+|++|+||++
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 2234789999999999999933333366778899999999 99999999999999999999999999999999999999
Q ss_pred EEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 510 ~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 429 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTE 429 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 999999999997 8999999999999999999974
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6.6e-64 Score=530.43 Aligned_cols=434 Identities=26% Similarity=0.313 Sum_probs=353.3
Q ss_pred cccHHH-HHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 41 ~~tl~~-~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..++.+ +|..+++++ +++|+++. ++ + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VT--G--VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CC--C--CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 468999 888889999 99999853 21 1 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|+++.++.+++.++|+.++++++|++.+....+..... ..+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence 999999999999999999999999999999999999887655433221 1121234444433210 001234
Q ss_pred HHHHHhcccccccccCCC------CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEec
Q 009090 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (544)
|+++.........+.... .++++++++|||||||.||+|.+||+++...+......+. ...+.++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 666654321110111111 2389999999999999999999999999988877654410 12678899999999
Q ss_pred ChHHHHHHHHH-HHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 274 PLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 274 p~~~~~g~~~~-~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
|++|.+++... +.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+...
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 302 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-------------------- 302 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence 99999998764 4456 9999999876 99999999999999999999999988764210
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD 430 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~ 430 (544)
....+ +++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++.....
T Consensus 303 -----------------~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 357 (548)
T 2d1s_A 303 -----------------LNKYD--------LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG 357 (548)
T ss_dssp -----------------GGGSC--------CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred -----------------ccccc--------ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence 11111 24899999999999999999999999 68899999999999877765433
Q ss_pred CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcE
Q 009090 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (544)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l 509 (544)
....+++|+|.|+++++|+| ++ ...+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|+||++
T Consensus 358 -~~~~~~~G~~~~~~~~~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 434 (548)
T 2d1s_A 358 -DDKPGASGKVVPLFKAKVID-LD-TKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434 (548)
T ss_dssp -CCCTTCCBEECTTCEEEEEC-TT-TCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred -cCCCCCCCccCCCceEEEEe-CC-cCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence 33458999999999999998 32 23556778999999999999999999999999999 7999999999999999999
Q ss_pred EEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 510 ~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 468 (548)
T 2d1s_A 435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFD 468 (548)
T ss_dssp EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEE
T ss_pred EEeccccceEEE-CCEEECHHHHHHHHHhCCCccE
Confidence 999999999997 8999999999999999999964
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.2e-63 Score=530.19 Aligned_cols=433 Identities=19% Similarity=0.229 Sum_probs=358.5
Q ss_pred CCCcccHHHHHHHHHHc-----CCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCc
Q 009090 38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC 111 (544)
Q Consensus 38 ~~~~~tl~~~l~~~a~~-----~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~ 111 (544)
|...+++.++|++++++ +|+++|+++. +. ++..+++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus 34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~ 109 (570)
T 3c5e_A 34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109 (570)
T ss_dssp CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence 44567889999999999 9999999876 32 33347899999999999999999998 999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHh
Q 009090 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 112 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
+++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+..... ..+..+.++.+++...
T Consensus 110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC-------
T ss_pred HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc-------
Confidence 99999999999999999999999999999999999999999999887665533221 2233444555443110
Q ss_pred hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHH--HHhhhhhhhhcccCCCCCCcEE
Q 009090 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~ 269 (544)
.....++++...... ........++++++|+|||||||.||||.++|+ ++. ..... ..+ ++.++|++
T Consensus 182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~ 250 (570)
T 3c5e_A 182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM 250 (570)
T ss_dssp ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence 013356666543321 122234567899999999999999999999999 444 33332 333 67899999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEec---CChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 270 l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
++..|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+..
T Consensus 251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------- 315 (570)
T 3c5e_A 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--------------- 315 (570)
T ss_dssp EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence 99999999999874 677899999999986 28999999999999999999999998875420
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCcee
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 425 (544)
... ..+++||.+++||+++++++.++|++.+|+.+++.||+||++..++
T Consensus 316 -----------------------~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 364 (570)
T 3c5e_A 316 -----------------------LSS--------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364 (570)
T ss_dssp -----------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred -----------------------ccc--------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence 000 1124899999999999999999999988999999999999997665
Q ss_pred eccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEe-----cCCccccccCChhhhhhcccCCccccCce
Q 009090 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDI 500 (544)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~-----~~~v~~gy~~~~~~~~~~~~~g~~~TGDl 500 (544)
..... ....+++|+|.++++++|+| +++ .+++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+
T Consensus 365 ~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g--~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl 440 (570)
T 3c5e_A 365 VSKTM-KIKPGYMGTAASCYDVQIID-DKG--NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440 (570)
T ss_dssp CCTTS-CCCTTCCCEECTTCCEEEEC-TTS--CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred cCccc-ccCCCcccccCCCceEEEEC-CCC--CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence 54332 33458999999999999999 544 45677899999999 99999999999999999999999999999
Q ss_pred EEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 501 g~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 441 g~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~ 483 (570)
T 3c5e_A 441 GIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVE 483 (570)
T ss_dssp EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEE
T ss_pred EEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 999999999999999999997 8999999999999999999964
No 12
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.6e-64 Score=528.69 Aligned_cols=421 Identities=24% Similarity=0.308 Sum_probs=325.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 73 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45789999999999999999999864 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++|+.++++++|++.+....+.... ........++..++.. .
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 138 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------G 138 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------S
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------c
Confidence 999999999999999999999999999999999999988766533332 2233445555544321 1
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.+.++...............++++++++|||||||.||+|.++|+++.+.+......+ ++.++|++++.+|++|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 213 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHV 213 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcch
Confidence 1222222111222333456789999999999999999999999999999998877766 78999999999999999
Q ss_pred HHHHHHHHHHHc-CcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009090 279 LDRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (544)
Q Consensus 279 ~g~~~~~~~l~~-G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (544)
+++...+.++.. |+++++...++..+++.++++++|+++++|.++..+++...
T Consensus 214 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------------------------- 267 (509)
T 3ivr_A 214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--------------------------
T ss_pred hHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--------------------------
Confidence 999877665544 54444444499999999999999999999999998865320
Q ss_pred cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCCccccC
Q 009090 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVG 436 (544)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 436 (544)
..+ .+++|.++.+|++ ++.+.+.+.+ ++.+++.||+||++++++........ .
T Consensus 268 -------------~~~--------l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~--~ 321 (509)
T 3ivr_A 268 -------------PAQ--------LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP--K 321 (509)
T ss_dssp -------------GGG--------GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGST--T
T ss_pred -------------ccc--------hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccCC--C
Confidence 011 1389999999987 8888888888 89999999999999887766543322 4
Q ss_pred ccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeec-
Q 009090 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK- 515 (544)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~- 515 (544)
++|+|+++++++|+| +++ .+++.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.
T Consensus 322 ~~G~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 398 (509)
T 3ivr_A 322 SAGRPLFWRTVAVVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAP 398 (509)
T ss_dssp SCCEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-
T ss_pred cccccCCCcEEEEEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCC
Confidence 599999999999999 543 5667789999999999999999999999999999999999999999999999999999
Q ss_pred -cceeecCCCceechHhHHHHhhcCCCccC
Q 009090 516 -KNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 516 -~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+|++ +|++|+|.+||++|.+||+|++
T Consensus 399 ~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~ 427 (509)
T 3ivr_A 399 EKELIKT-GGENVYPAEVEGALKQHPAIAD 427 (509)
T ss_dssp ------------------------------
T ss_pred cceeEEE-CCEEECHHHHHHHHHhCCCcee
Confidence 999997 8999999999999999999975
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.6e-64 Score=529.92 Aligned_cols=420 Identities=23% Similarity=0.326 Sum_probs=345.5
Q ss_pred HHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcC
Q 009090 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (544)
Q Consensus 46 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G 125 (544)
++|+++++++|++.++... +.. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~-~--~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA-G--DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT-C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC-C--cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4788999999999999864 211 1 589999999999999999999999999999999999999999999999999
Q ss_pred CEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHh
Q 009090 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (544)
Q Consensus 126 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (544)
++++|+++.++.+++.++++.++++++|++.+....+....... . ..+..+..... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV--G-ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH--T-CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc--C-ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987655433222111 1 12222222110 01111111
Q ss_pred cccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-H
Q 009090 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (544)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~ 284 (544)
.. ..........++++++++|||||||.||+|.++|+++.+.+......+ ++.++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233455789999999999999999999999999999988877766 7899999999999999998764 6
Q ss_pred HHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcC
Q 009090 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (544)
Q Consensus 285 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (544)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 678889999998876 9999999998 89999999999988764211
Q ss_pred CcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCcc
Q 009090 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (544)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (544)
... ...+++|.+++||+++++++.+.|.+.++..+++.||+||++..++.. .......+++|+|++
T Consensus 262 -----~~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTK--------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP-YDGDRVPGAVGPALP 327 (503)
T ss_dssp -----CST--------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCC-SSSCCCTTEEEEBCT
T ss_pred -----ccc--------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccC-CCCCCcCCccccCCC
Confidence 011 112489999999999999999999999999999999999998775433 333444588999999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecC
Q 009090 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (544)
Q Consensus 444 ~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~ 522 (544)
+++++|+| +++ ..+++.|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus 328 ~~~~~i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTD-PET-GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEE-CCC-CCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 99999998 333 3567788999999999999999999999999999 5999999999999999999999999999998
Q ss_pred CCceechHhHHHHhhcCCCccC
Q 009090 523 QGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 523 ~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|++|+|.|||++|.+||+|.|
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~ 426 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVE 426 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEE
T ss_pred CCEEECHHHHHHHHHhCCCeeE
Confidence 7999999999999999999964
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.3e-64 Score=535.56 Aligned_cols=409 Identities=20% Similarity=0.215 Sum_probs=315.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999864 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++|+.++++++|++.+....+. ....+. ..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~-~~~~~~-------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLY-VEDEAA-------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEE-CCC-----------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCccee-eecccc--------------
Confidence 999999999999999999999999999999999999976544321 111111 111100
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
. ............++++++++|||||||.||||+++|+++.+.+... ..+ .+.++|+++...|++|.
T Consensus 200 ------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~ 266 (570)
T 4gr5_A 200 ------S-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWD 266 (570)
T ss_dssp -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSS
T ss_pred ------c-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHH
Confidence 0 0011112234578999999999999999999999999998776542 222 67899999999999987
Q ss_pred HHHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
.+...++.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+....
T Consensus 267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------- 323 (570)
T 4gr5_A 267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------- 323 (570)
T ss_dssp THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence 776677788999999999863 889999999999999999999999988643110
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC---
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--- 431 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~--- 431 (544)
..++||.+++||+++++++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 324 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~ 378 (570)
T 4gr5_A 324 -------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL 378 (570)
T ss_dssp -------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred -------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence 113899999999999999999988887 789999999999998776554322
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cC--------CccccCceEE
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ 502 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~--------g~~~TGDlg~ 502 (544)
.....++|+|+++++++|+| +++ .+++.|+.|||+|+|+.++.||+++++.+.+.| .+ |||+|||+|+
T Consensus 379 ~~~~~~iG~p~~~~~v~i~d-~~~--~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 379 SGTALPIGVPLAGKRAYVLD-DDL--KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR 455 (570)
T ss_dssp TSSSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred CCCccccceeeCCCEEEEEC-CCC--CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence 22335799999999999999 543 556778999999999999999999999999988 33 6999999999
Q ss_pred EccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 503 ~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|++
T Consensus 456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~ 496 (570)
T 4gr5_A 456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQ 496 (570)
T ss_dssp ECTTSCEEEEEC------------------------------
T ss_pred ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcce
Confidence 9999999999999999997 8999999999999999999975
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=9.6e-64 Score=527.93 Aligned_cols=433 Identities=21% Similarity=0.243 Sum_probs=344.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
+|..++++.++|+++++ +|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 88 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV 88 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence 44667889999999999 9999999753 2 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccc-cEEEEecCCchHHHHHHhhCCc
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
++|||+++|++++|+++.++.+++.++|+.++++++|++.+....+..... ..... ..++..+..... ..
T Consensus 89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~ 159 (529)
T 2v7b_A 89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PR 159 (529)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cc
Confidence 999999999999999999999999999999999999999877654433221 11112 333333322100 00
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhH-HHHHhhhhhhhhcccCCCCCCcEEEEecC
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (544)
....++++..... .........++++++++|||||||.||+|.+||+++ ..........+ ++.++|++++..|
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p 233 (529)
T 2v7b_A 160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK 233 (529)
T ss_dssp CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence 1224566554221 122233457899999999999999999999999999 56555544333 6789999999999
Q ss_pred hHHHHHHHH-HHHHHHcCcEEEEec-C-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 275 ~~~~~g~~~-~~~~l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
++|.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++....
T Consensus 234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------- 294 (529)
T 2v7b_A 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL------------------- 294 (529)
T ss_dssp TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-------------------
Confidence 999999875 556899999999873 3 899999999999999999999999887532100
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~ 431 (544)
.... ..++|.+++||+++++++.++|++.+|+++++.||+||++.+++......
T Consensus 295 --------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~ 348 (529)
T 2v7b_A 295 --------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA 348 (529)
T ss_dssp --------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred --------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence 0000 02799999999999999999999999999999999999987766654443
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEE
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~ 511 (544)
...+++|+|+++++++|+| +++ .+++.|+.|||+|+|+.++.||+++++.+.+.|.++||+|||+|++++||++++
T Consensus 349 -~~~~~~G~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~ 424 (529)
T 2v7b_A 349 -VEYGTTGRPVPGYEIELRD-EAG--HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY 424 (529)
T ss_dssp -CCTTSCCEECTTCEEEEEC-TTS--CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred -CccCCcccCCCCCEEEEEC-CCC--CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence 3447899999999999999 544 456678999999999999999999999999999999999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 456 (529)
T 2v7b_A 425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLE 456 (529)
T ss_dssp EEEGGGCBC-----CBCHHHHHHHHTTSTTEEE
T ss_pred eCccCCeEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999997 8999999999999999999864
No 16
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2e-63 Score=532.21 Aligned_cols=407 Identities=19% Similarity=0.163 Sum_probs=341.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR----F-----GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC----C-----CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4679999999999999999999865 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++++.+++++++++........ ..... ..
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~~-------------------- 146 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-PV-------------------- 146 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-EG--------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-ee--------------------
Confidence 99999999999999999999999999999999997654432110 01000 00
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
..+. ............++++++++|||||||.||||+++|+++.+.+.. ...+ .+.++|+++...|++|..
T Consensus 147 -~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 147 -RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp -GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred -ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 0000 001111222346899999999999999999999999999887765 2333 688999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
++...+.++..|+++++.+. ++..+.+.++++++|+++++|+++..+.+...
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 272 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------- 272 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence 98888889999999999752 89999999999999999999999988764210
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC---c
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~---~ 432 (544)
...++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++...... .
T Consensus 273 -----------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 329 (620)
T 4dg8_A 273 -----------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329 (620)
T ss_dssp -----------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred -----------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence 0113899999999999999888877766 889999999999998776543322 2
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccC--------CccccCceEEEc
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL 504 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~--------g~~~TGDlg~~~ 504 (544)
....++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++|+.+.+.|.+ +||+|||+|+++
T Consensus 330 ~~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 330 EDDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 3346899999999999999 4433 44667899999999999999999999999999943 799999999999
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||+|+++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~ 446 (620)
T 4dg8_A 408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILD 446 (620)
T ss_dssp TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEE
T ss_pred CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccE
Confidence 99999999999999998 7999999999999999999974
No 17
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.1e-63 Score=536.42 Aligned_cols=445 Identities=17% Similarity=0.218 Sum_probs=359.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..+++.++|+++++++|+++|+++. +..++..+++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578899999999999999999976 3334456899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh---------Hhhcccccc-cccccEEEEecCCchHHHHH
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (544)
||+++|++++|+++.++.+++.++|+++++++||+++.... .+....... ......++.++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999876432 111111100 01234555554321000
Q ss_pred HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHh-hhhhhhhcccCCCCCCcE
Q 009090 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV 268 (544)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~-~~~~~~~~~~~~~~~~d~ 268 (544)
.........|+++..... .........++++++|+|||||||.||||+++|++++..+. .....+ ++.++|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 000012356777765432 11223345678999999999999999999999999876653 333334 6889999
Q ss_pred EEEecChHHHHHHH-HHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHH
Q 009090 269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (544)
Q Consensus 269 ~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (544)
+++..|++|.+++. .++.+++.|+++++.++ ++..+++.++++++|+++++|+++..|.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------- 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence 99999999999985 47788999999999864 789999999999999999999999887642110
Q ss_pred HHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeecccc
Q 009090 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE 419 (544)
..... ++++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 371 -------------------------~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 371 -------------------------AIEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp -------------------------GTTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred -------------------------ccccC--------CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 00111 2348999999999999999999999887 89999999999
Q ss_pred ccCceeeccCC-CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhcc---cCC
Q 009090 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (544)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~g 493 (544)
+++.++...+. .....+++|+|++|++++|+| +++ .+++.|+.|||+|+| |+++.||+++++.+.+.| .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g--~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCC--CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99877665443 234558999999999999999 544 355667899999999 799999999999887776 389
Q ss_pred ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 494 ~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||+|+|
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~e 544 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAE 544 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEE
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999999999999999999999998 7999999999999999999974
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7e-63 Score=529.98 Aligned_cols=428 Identities=19% Similarity=0.210 Sum_probs=354.8
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999988 999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCc
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
||+++|++++|+++.++.+++.++++.+++++++++..... ...............+....+...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999876531 111111112233344444333221
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (544)
..+.+..... ..........++++++++|||||||.||||+++|+++.+.+......+ ++.++|+++++.|+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 1233333322 112233445778999999999999999999999999999998887777 78999999999999
Q ss_pred HHHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 009090 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (544)
Q Consensus 276 ~~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (544)
+|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.......
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 297 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES----------------- 297 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-----------------
Confidence 99999874 7778999999999876 899999999999999999999999988764332100
Q ss_pred HHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCc
Q 009090 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (544)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~ 432 (544)
....++||.+++||+++++++.++|.+.+++.+++.||+||++..++.......
T Consensus 298 --------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 298 --------------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp --------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred --------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 001248999999999999999999999999999999999999865554333323
Q ss_pred cccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEE
Q 009090 433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (544)
Q Consensus 433 ~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~ 510 (544)
....++|.|+ ++.+++|+| +++ .+++.|+.|||+|+|+.++.||+++|+.+.+.| .++||+|||+|++++||.++
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCC--CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3335789887 788999998 444 566788999999999999999999999999999 78999999999999999999
Q ss_pred EEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 511 ~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~ 461 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIY 461 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEE
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeE
Confidence 99999999997 7999999999999999999864
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.8e-63 Score=533.17 Aligned_cols=447 Identities=18% Similarity=0.236 Sum_probs=358.4
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCchhHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
..+++.++|+++++++|+++|+++. +..++..+++||+||.++++++|+.|+ +.|+++||+|+++++|++++++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 3578999999999999999999986 333445689999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhH--------hhcccccccccccEEEEecCCchHHHHHH
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (544)
|||+++|++++|+++.++.+++.++|+++++++||+++..... .........+....++.++...... .
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence 9999999999999999999999999999999999998765321 1111111122344555554321000 0
Q ss_pred hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhh-hhhhhhcccCCCCCCcEE
Q 009090 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 269 (544)
........+|+++..... .........++++++|+|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 000112356777765332 122334456789999999999999999999999998766543 33333 68899999
Q ss_pred EEecChHHHHHHH-HHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHH
Q 009090 270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (544)
Q Consensus 270 l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~ 343 (544)
++..|+.|++++. .++.++..|+++++.++ ++..+++.++++++|+++++|+++..|.+...
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------ 375 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD------------ 375 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT------------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc------------
Confidence 9999999999985 46788999999999864 78899999999999999999999988753110
Q ss_pred HHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeeccccc
Q 009090 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (544)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE~ 420 (544)
...... ++++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 376 -----------------------~~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 376 -----------------------SYIENH--------SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp -----------------------TSSSSC--------CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred -----------------------cccccC--------CcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 000111 2248999999999999999999999987 899999999999
Q ss_pred cCceeeccC--CCccccCccCcCccCceEEEeecCCCCCCCCCC-CCCCeEEEec--CCccccccCChhhhhhcc---cC
Q 009090 421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID 492 (544)
Q Consensus 421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~-g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~ 492 (544)
++.++...+ ......+++|+|++|++++|+| ++++ .+++. |+.|||+++| |+++.||+++++.+.+.| .+
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g-~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTG-EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSST-TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCC-CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 987766544 2234558999999999999999 4222 33444 7889999999 589999999999888876 37
Q ss_pred CccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 493 g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||+|.|
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~e 553 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAE 553 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEE
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcce
Confidence 99999999999999999999999999998 7999999999999999999864
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=9.3e-63 Score=522.74 Aligned_cols=408 Identities=20% Similarity=0.260 Sum_probs=339.0
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 107 (563)
T 1amu_A 37 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107 (563)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|+++.++.+++.++++.++++++|++.+....+..... ...+..+....
T Consensus 108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST----------------
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh----------------
Confidence 999999999999999999999999999999999999876544322111 11222222110
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
+. .. ..........++++++++|||||||.||||++||+++.+.+..+...+ ++.++|++++..|++|..
T Consensus 167 ---~~-~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 236 (563)
T 1amu_A 167 ---IK-IR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA 236 (563)
T ss_dssp ---TT-TS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred ---hc-cc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence 00 00 011112334678999999999999999999999999998887766655 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+...
T Consensus 237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------- 290 (563)
T 1amu_A 237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------- 290 (563)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence 88777889999999998864 789999999999999999999988765210
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC--cc
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC 433 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~--~~ 433 (544)
..+++|.+++||+++++++.+.|++ .+.+++.||+||++.+++...... ..
T Consensus 291 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 343 (563)
T 1amu_A 291 -------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG 343 (563)
T ss_dssp -------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred -------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCC
Confidence 1148999999999999999999887 478999999999998766554332 22
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-------CCccccCceEEEccC
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPN 506 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~~ 506 (544)
...++|+|+++++++|+| +++ .+++.|+.|||+|+|++++.||+++|+.+.+.|. ++||+|||+|++|+|
T Consensus 344 ~~~~vG~p~~~~~v~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~d 420 (563)
T 1amu_A 344 HSVPIGAPIQNTQIYIVD-ENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD 420 (563)
T ss_dssp SSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred CCCcccceeCCCEEEEEC-CCc--CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCC
Confidence 346899999999999999 544 4566789999999999999999999999999883 249999999999999
Q ss_pred CcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 507 g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 421 G~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~ 457 (563)
T 1amu_A 421 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISE 457 (563)
T ss_dssp SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEE
T ss_pred CeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcce
Confidence 999999999999998 8999999999999999999864
No 21
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6.7e-63 Score=519.03 Aligned_cols=411 Identities=18% Similarity=0.222 Sum_probs=347.8
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCchhHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
.|+.++|+++|+++|+++|+++. + +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 37899999999999999999864 3 6899999999999999999985 888999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++.++.+++.++|+.++++++|++.......... .....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecH
Confidence 999999999999999999999999999999999975432211000 0123344
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
+++...............++++++++|||||||.||+|.+||+++.+.+..+...+ ++..+|++++..|++|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554332222223345778999999999999999999999999999988877666 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999999864 78999999999999999999999988754210
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC----
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
... ..++++|.++++|+++++++.+++.+.+ ++.+++.||+||+++.++......
T Consensus 254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 000 1124899999999999999999999999 899999999999998776543222
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc--cCC--ccccCceEEEccCC
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~g 507 (544)
.....++|+|.++++++|+| +++ .+++.|+.|||+|+||.++.||+++|+.+.+.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEG--QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCC--CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 22335799999999999999 543 466778999999999999999999999999998 344 7999999999 599
Q ss_pred cEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 508 ~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++++.||.||+|++ +|++|+|.+||++|.+||+|++
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 425 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRS 425 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEE
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcce
Confidence 99999999999998 8999999999999999999864
No 22
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.5e-63 Score=521.55 Aligned_cols=412 Identities=18% Similarity=0.201 Sum_probs=342.5
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
.|+.++|+++++++|+++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR----D-----AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC----C-----ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999864 3 68999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHH
Q 009090 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (544)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (544)
+++|++++|+++.++.+++.++++.++++++|++....... .. ..++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence 99999999999999999999999999999999975432110 00 0111100 111
Q ss_pred HHHhc-ccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 202 ~l~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
++... ............++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 11111 11112223345789999999999999999999999999999988877766 7899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 89999999999999999999999987653211
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC----
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
... ..++++|.+++||+++++++.++|.+.+ ++.+++.||+||+++.++......
T Consensus 255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 001 1224899999999999999999999999 889999999999998776554332
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc----CCccccCceEEEccCC
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~----~g~~~TGDlg~~~~~g 507 (544)
.....++|+|.+++++++++ +++ .+++.|+.|||+++||.++.||+++|+.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDG--TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSS--CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCC--CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346799999999999999 544 4566789999999999999999999999999883 459999999999 799
Q ss_pred cEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 508 ~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++++.||.||+|++ +|++|+|.+||++|.+||+|++
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 426 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEG 426 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEE
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 99999999999998 8999999999999999999864
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=8.6e-63 Score=556.07 Aligned_cols=467 Identities=25% Similarity=0.332 Sum_probs=344.6
Q ss_pred ccCCCCCCCCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHH
Q 009090 9 EEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQ 88 (544)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~ 88 (544)
++.-+..++++....+|++......+ +...|+.++|.++++++|+++|+++. +. + +++||+||.+++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~ 100 (979)
T 3tsy_A 32 SQVMEKQSNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PT--G--HVYTYSDVHVISRQ 100 (979)
T ss_dssp -------------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHH
T ss_pred HHhhhhcccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHH
Confidence 34445566777778888887543332 24589999999999999999999864 22 2 68999999999999
Q ss_pred HHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccccc
Q 009090 89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR 168 (544)
Q Consensus 89 la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~ 168 (544)
+|++|++.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++|+.++++++|++.+....+......
T Consensus 101 lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~ 180 (979)
T 3tsy_A 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND 180 (979)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT
T ss_pred HHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776554332211
Q ss_pred ccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHH
Q 009090 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~ 246 (544)
. ...++.+++... .........+.++...... .........++++++|+|||||||.||+|+++|+++.
T Consensus 181 ~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~ 251 (979)
T 3tsy_A 181 D---GVVIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLV 251 (979)
T ss_dssp S---CCEEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHH
T ss_pred C---CceEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHH
Confidence 1 123333333210 0011123455555433221 1223344678999999999999999999999999999
Q ss_pred HHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHH
Q 009090 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFE 324 (544)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~ 324 (544)
..+....... .....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++.
T Consensus 252 ~~~~~~~~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 330 (979)
T 3tsy_A 252 TSVAQQVDGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVL 330 (979)
T ss_dssp HHHHHHHCSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHH
T ss_pred HHHHHHHHhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHH
Confidence 8876543321 11125778999999999999999865 5668999999999876 9999999999999999999999998
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHH
Q 009090 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404 (544)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~ 404 (544)
.+.+... ....+ +++||.+++||+++++++.++++
T Consensus 331 ~l~~~~~-------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~ 365 (979)
T 3tsy_A 331 AIAKSSE-------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVN 365 (979)
T ss_dssp HHHHCGG-------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHH
T ss_pred HHHhCcc-------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHH
Confidence 8764211 11111 24899999999999999999999
Q ss_pred Hhc-CCceEEeeccccccCceeecc----CCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccc
Q 009090 405 VTC-CAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479 (544)
Q Consensus 405 ~~~-~~~i~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy 479 (544)
+.+ ++.+++.||+||++.+++... .......+++|+|+++++++|+| ++. ..+++.|+.|||+|+|+.++.||
T Consensus 366 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~-~~~~~~g~~GEl~i~g~~v~~GY 443 (979)
T 3tsy_A 366 AKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDT-GDSLSRNQPGEICIRGHQIMKGY 443 (979)
T ss_dssp HHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTS-CCBCCTTCCEEEEEESTTSCSEE
T ss_pred HHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCC-CCCCCCCCccEEEEECCCccccc
Confidence 998 899999999999998766542 11223457899999999999999 432 35667789999999999999999
Q ss_pred cCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 480 YKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 480 ~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++|+.+.+.| .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||+|+|
T Consensus 444 ~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~ 508 (979)
T 3tsy_A 444 LNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITD 508 (979)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------
T ss_pred cCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 99999999999 7999999999999999999999999999998 7999999999999999999975
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.1e-62 Score=519.12 Aligned_cols=413 Identities=17% Similarity=0.165 Sum_probs=337.8
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
+.++.++|+++++++|+++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++.++.+++.++++.++++++|++++....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876532211 00 1 1122
Q ss_pred HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 201 ~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.++.... ...........++++++++|||||||.||+|++||+++.+.+....... ......+++++...|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221111 0111223345789999999999999999999999999998776654431 1267889999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.++...+.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888778888999999998864 88999999999999999999999887643110
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC--
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~-- 431 (544)
... ...+++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++......
T Consensus 258 --------------~~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQ--------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------ccc--------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 000 1124899999999999999999999998 899999999999998776543322
Q ss_pred --ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc----cCCccccCceEEEcc
Q 009090 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (544)
Q Consensus 432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~----~~g~~~TGDlg~~~~ 505 (544)
.....++|+|.++++++|+| +++ .+++.|+.|||+|+||.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDG--KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTS--CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCc--CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336899999999999999 544 456678999999999999999999999999988 356999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||++++.||.||+|++ +|++|+|.+||++|.+||+|.+
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~ 430 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVAS 430 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEE
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcce
Confidence 9999999999999997 7999999999999999999864
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.6e-63 Score=517.35 Aligned_cols=421 Identities=22% Similarity=0.243 Sum_probs=337.0
Q ss_pred cHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHH
Q 009090 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (544)
Q Consensus 43 tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (544)
|+.++|+++++++|+++|+++. + +++||+||.++++++|++|++. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG----Q-----ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 2 5899999999999999999986 89999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCce-eeeHH
Q 009090 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK-PYSWD 201 (544)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 201 (544)
++|++++|+++.++.+++.++|+.++++++|++.+.......... ......+.......... ....... ....+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccchh
Confidence 999999999999999999999999999999999876543322111 01111111000000000 0000000 00011
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHH
Q 009090 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (544)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~ 281 (544)
.+...............++++++++|||||||.||+|.+||+++...+..+...+ ++.++|+++++.|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111123345789999999999999999999999999999988877766 78899999999999999999
Q ss_pred HHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 009090 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (544)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (544)
...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999988653110
Q ss_pred CcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-ccccCccC
Q 009090 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG 439 (544)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~~~G 439 (544)
...++|.+++||+++++++.+++.+ +++++++.||+||+++.++...... ....+++|
T Consensus 272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0017999999999999999999988 4999999999999987655543322 23457899
Q ss_pred cCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeecccee
Q 009090 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (544)
Q Consensus 440 ~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i 519 (544)
+|++++++++++ ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||++++.||.||+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999998 33 345799999999999999999998887 889999999999999999999999999999
Q ss_pred ecCCCceechHhHHHHhhcCCCccC
Q 009090 520 KISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 520 ~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++ +|++|+|.+||++|.+||+|++
T Consensus 402 k~-~G~~v~p~eiE~~l~~~p~V~~ 425 (501)
T 3ipl_A 402 IS-GGENIYPYQIETVAKQFPGISD 425 (501)
T ss_dssp EC-SSCEECHHHHHHHHTTSTTEEE
T ss_pred EE-CCEEECHHHHHHHHHhCCCccE
Confidence 96 8999999999999999999974
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.4e-61 Score=517.43 Aligned_cols=433 Identities=20% Similarity=0.258 Sum_probs=351.4
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC
Q 009090 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 110 (544)
Q Consensus 31 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n 110 (544)
.+.+|...+...|+.++|+++++++|+.+++. ...+..+++||+||.++++++|++|++.|+++||+|+++++|
T Consensus 10 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~------~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (576)
T 3gqw_A 10 THSLPMRYADFPTLVDALDYAALSSAGMNFYD------RRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAET 83 (576)
T ss_dssp ----CCCCSCCSSHHHHHHHHTTSSCEEEEEC------TTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCS
T ss_pred cCCCCcccCCCCcHHHHHHHHhhCCCCeEEeC------CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 45677777889999999999999999977763 233334799999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCEEeecCCCCC-------hhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCc
Q 009090 111 CPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (544)
Q Consensus 111 ~~~~~~~~lA~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (544)
++++++++|||+++|++++|+++.++ .+++.++++.++++++|++++....+....... ... .++
T Consensus 84 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~~~------ 155 (576)
T 3gqw_A 84 SSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PEL-HVL------ 155 (576)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTC-EEE------
T ss_pred cHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccc-eec------
Confidence 99999999999999999999999998 789999999999999999988766543322111 111 111
Q ss_pred hHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCC
Q 009090 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM 263 (544)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~ 263 (544)
....... ............++++++++|||||||.||+|.++|+++...+..+... ...+
T Consensus 156 ---------------~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~ 215 (576)
T 3gqw_A 156 ---------------SHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD----GIKL 215 (576)
T ss_dssp ---------------EHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT----TSCC
T ss_pred ---------------chhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc----ccCC
Confidence 1111111 1112223334568999999999999999999999999999888766443 1268
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhh
Q 009090 264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (544)
Q Consensus 264 ~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~ 337 (544)
.++|++++++|++|.+|+.. .+.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+......
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--- 292 (576)
T 3gqw_A 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD--- 292 (576)
T ss_dssp CTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH---
T ss_pred CCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc---
Confidence 89999999999999999876 5567888999888763 88999999999999999999999987654222110
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc------CCce
Q 009090 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFL 411 (544)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------~~~i 411 (544)
.. ...++++|.+++||+++++++.++|.+.+ +..+
T Consensus 293 -------------------------------~~--------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (576)
T 3gqw_A 293 -------------------------------LA--------ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTF 333 (576)
T ss_dssp -------------------------------HT--------TCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred -------------------------------cc--------cCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccc
Confidence 11 11234899999999999999999999988 6789
Q ss_pred EEeeccccccCceeeccCCCc---------------------------cccCccCcCccCceEEEeecCCCCCCCCCCCC
Q 009090 412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP 464 (544)
Q Consensus 412 ~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~ 464 (544)
++.||+||++++++....... ....++|+|+++++++|+| +++ .+++.|+
T Consensus 334 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g--~~~~~g~ 410 (576)
T 3gqw_A 334 MPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAG--MPVAERV 410 (576)
T ss_dssp EEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTS--CBCCTTB
T ss_pred cccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCC--CCCCCCC
Confidence 999999999988776543211 0113789999999999998 444 4566789
Q ss_pred CCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 465 CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 465 ~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++ +||+++++||.||+||+ +|++|+|.+||++|.+||+|++
T Consensus 411 ~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 488 (576)
T 3gqw_A 411 VGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHS 488 (576)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCT
T ss_pred eEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCccccc
Confidence 999999999999999999998888889999999999999 79999999999999998 8999999999999999999974
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=9.4e-62 Score=520.08 Aligned_cols=427 Identities=18% Similarity=0.234 Sum_probs=347.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
.+..|+.++|+++|+++|+++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35679999999999999999999876 42 23479999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCC---hhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCc
Q 009090 119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
|||+++|++++|++|..+ .+++.++++.+++++++++.+....+.............+..
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 145 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA----------------- 145 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEE-----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccce-----------------
Confidence 999999999999999884 578999999999999999988766653322111111111111
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (544)
...+.+... ...........++++++|+|||||||.||||++||+++.+.+......+ ++.++|++++++|+
T Consensus 146 --~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 146 --IALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp --EEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred --eechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 111111110 0112233456789999999999999999999999999999998887766 78999999999999
Q ss_pred HHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 009090 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (544)
Q Consensus 276 ~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (544)
+|.+|+.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+.+...
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 281 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE---------------- 281 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence 99999986 7778999999999864 7899999999999999999999998876532111
Q ss_pred HHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC------CceEEeeccccccCc
Q 009090 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP 423 (544)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~YG~tE~~~~ 423 (544)
..... .++++|.+++||+++++++.++|.+.++ ..+++.||+||++++
T Consensus 282 ------------------~~~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 282 ------------------KKEGL--------DLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp ------------------GGTTC--------CCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred ------------------hccCC--------CchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 01111 2248999999999999999999999873 369999999999988
Q ss_pred eeeccCC--------------------------CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 009090 424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (544)
Q Consensus 424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~ 477 (544)
++..... ......++|+|+++ ++|++ ++ +..+++.|+.|||+|+||.++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PD-TLIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TT-TCCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CC-CCcCCCCCCEEEEEEeCCcccc
Confidence 7764321 11233678999988 78887 33 3466778899999999999999
Q ss_pred cccCChhhhhhcccC-------C--ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHh-hcCCCcc
Q 009090 478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE 543 (544)
Q Consensus 478 gy~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l-~~~~~V~ 543 (544)
||+++|+.+.+.|.+ | ||+|||+|++| ||+|+++||.||+|++ +|++|+|.|||++| ..+|+|.
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~ 485 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHV 485 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGG
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCcccc
Confidence 999999999999843 5 99999999999 9999999999999998 89999999999999 7888875
No 28
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.9e-62 Score=510.33 Aligned_cols=409 Identities=26% Similarity=0.321 Sum_probs=332.7
Q ss_pred CCcccHHHHHHHHHHcCCC-CCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
..+.++.++|.++++++|+ ++|+++. + +++||+||.++++++|+.|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4578999999999999887 9999864 3 68999999999999998774 488999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCcee
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (544)
+|||+++|++++|++|.++.+++.++|+.++++++|++.+.... ........ +..+..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~-~~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALER-VDVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEE-EECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhccccc-cccccc---------------
Confidence 99999999999999999999999999999999999998652110 00111111 111110
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHH
Q 009090 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
...........++++++++|||||||.||||.++|+++.+.+..+...+ ++.++|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0111122345678999999999999999999999999999998887777 7889999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 278 ~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
..|+.. .+.++..|+++++.+. ++..+.+.+ ++++|+++++|+++..+.+.......
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 266 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-------------------- 266 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------
Confidence 999875 7778999999999876 888899988 88999999999999988764321110
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcccc
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~ 435 (544)
...++ +++|.+++||+++++++.+++.+.+++++++.||+||++..++..... ....
T Consensus 267 --------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~ 323 (505)
T 3nyq_A 267 --------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRA 323 (505)
T ss_dssp --------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCT
T ss_pred --------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCC
Confidence 00112 279999999999999999999999999999999999998776655443 3344
Q ss_pred CccCcCccCceEEEeecCCCCCCCC-CCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEe
Q 009090 436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID 513 (544)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~-~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~G 513 (544)
+++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||.+++.|
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~G 402 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG 402 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeC
Confidence 8899999999999999 55544432 447899999999999999999999999999 69999999999999999999999
Q ss_pred ec-cceeecCCCceechHhHHHHhhcCCCccC
Q 009090 514 RK-KNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 514 R~-~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|. ||+|++ +|++|+|.|||++|.+||+|+|
T Consensus 403 R~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~ 433 (505)
T 3nyq_A 403 RKATDLIKS-GGYKIGAGEIENALLEHPEVRE 433 (505)
T ss_dssp ESSCCCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred CccCceEEe-CCEEECHHHHHHHHHHCcCccE
Confidence 98 599997 8999999999999999999974
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-61 Score=514.81 Aligned_cols=425 Identities=17% Similarity=0.137 Sum_probs=318.9
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCC----CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP 112 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~----~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~ 112 (544)
...+..|+.++|+++|+++|+++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 90 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL 90 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence 3456788999999999999999999876 32 22334789999999999999999999999 7999999999999
Q ss_pred hHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhh
Q 009090 113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (544)
Q Consensus 113 ~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (544)
++++++|||+++|++++|+++.++.+++.++|+.++++++|++++...... ......++.... .
T Consensus 91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~--~-------- 154 (562)
T 3ite_A 91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN--Q-------- 154 (562)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC--H--------
T ss_pred HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc--h--------
Confidence 999999999999999999999999999999999999999999876544321 011112222111 0
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhh---cccCCCCCCcEE
Q 009090 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVY 269 (544)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~ 269 (544)
.+.+..... ..........++++++++|||||||.||||++||+++.+.+..+...+. .....+...+++
T Consensus 155 ------~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (562)
T 3ite_A 155 ------SFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF 227 (562)
T ss_dssp ------HHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEE
T ss_pred ------hhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceE
Confidence 122222111 1111223346788999999999999999999999999888776554321 111247788999
Q ss_pred EEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 009090 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (544)
Q Consensus 270 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (544)
++..|+.|..++...+.++..|+++++.+. .+..+.+.++++++|++.++|+++..+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------ 289 (562)
T 3ite_A 228 LCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------ 289 (562)
T ss_dssp ECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------
T ss_pred EEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------
Confidence 999999998888777888999999988765 467889999999999999999987654210
Q ss_pred HHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeec
Q 009090 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (544)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 427 (544)
. ...++||.+++||+++++++.++|++.+++.+++.||+||++..++..
T Consensus 290 -----------------------~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 338 (562)
T 3ite_A 290 -----------------------P--------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338 (562)
T ss_dssp -----------------------G--------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred -----------------------c--------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence 0 012489999999999999999999998899999999999999887776
Q ss_pred cCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCC--ccccCceEEEcc
Q 009090 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILP 505 (544)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g--~~~TGDlg~~~~ 505 (544)
.........++|+|++++++++++ ++ +..+++.|+.|||+|+|+.++.||+++|+.+...+.+| ||+|||+|++|+
T Consensus 339 ~~~~~~~~~~~G~p~~~~~~~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~ 416 (562)
T 3ite_A 339 RILPDSDTRCIGHPLGDSVAHVLA-PG-SNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA 416 (562)
T ss_dssp ECCTTSCTTEEEEECTTCEEEEEC-TT-SSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT
T ss_pred eecCCCCCccccccCCCCeEEEEe-CC-CCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC
Confidence 555544557899999999999998 33 33556788999999999999999999999888777777 999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~ 540 (544)
||++++.||.||+|++ +|++|+|.|||++|.+|+
T Consensus 417 dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~ 450 (562)
T 3ite_A 417 DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLS 450 (562)
T ss_dssp TSCEEEEEEC-------------------------
T ss_pred CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcC
Confidence 9999999999999997 899999999999999883
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-58 Score=535.23 Aligned_cols=411 Identities=21% Similarity=0.262 Sum_probs=344.3
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+.+++++|+++|+++. + +++||+||.++++++|++|++.|+++|++|+++++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS----G-----QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 2 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|++|.++.+++.++|+.++++++|++.+....+... ......+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc-----------------
Confidence 999999999999999999999999999999999987654432111 1112223322210
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
.+. ...........++++++++|||||||.||||+++|+++.+.. .....+ .++++|+++...|+.|..+
T Consensus 592 -~~~---~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 -RFE---EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -GGG---SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred -ccc---cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 000 011112234578899999999999999999999999998763 333333 6789999999999999888
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
...++.++..|+++++.+. ++..+.+.+.++++|+++++|+++..+.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 8778889999999999874 889999999999999999999999887542100
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC-CceEEeeccccccCceeeccCCC---c
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE---M 432 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~---~ 432 (544)
.+ ++||.+++||+++++++.+.|.+.++ ..+++.||+||++.+++...... .
T Consensus 718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 01 28999999999999999999988874 68999999999998877654322 2
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-------CCccccCceEEEcc
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP 505 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 505 (544)
....++|+|+++++++|+| +++ .+++.|+.|||+|+|+++++||+++|+.|.+.|. ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQS--QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTS--CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCc--CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2336799999999999999 443 5667789999999999999999999999999982 34999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.|+++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~ 888 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKD 888 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCE
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCce
Confidence 9999999999999998 7999999999999999999974
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=4.9e-58 Score=479.06 Aligned_cols=404 Identities=16% Similarity=0.188 Sum_probs=313.1
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
..-...++.++|+++++++||++|+++....++.++.++++||+||.++++++|++|++.|+ +||+|+++++|++++++
T Consensus 19 ~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 19 SHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp -----CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHH
T ss_pred CCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHH
Confidence 33457899999999999999999999871111345556899999999999999999999996 99999999999999999
Q ss_pred HHHHHHhcCCEEeecCC---CCChhHHHHHHHhcCceEEEEccchhhHhhcccccccc-cccEEEEecCCchHHHHHHhh
Q 009090 117 AMEACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQ 192 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 192 (544)
++|||+++|++++|+++ .++.+++.++|+.++++++|++.+....+......... ....++..+...
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 168 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD--------- 168 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC---------
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc---------
Confidence 99999999999999998 77899999999999999999998877665443321110 011222221110
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCC------C
Q 009090 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------D 266 (544)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------~ 266 (544)
. ............++++++|+|||||||.||||++||+++.+.+......+ .+.. +
T Consensus 169 ------------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~ 230 (480)
T 3t5a_A 169 ------------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPN 230 (480)
T ss_dssp ------------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTT
T ss_pred ------------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCC
Confidence 0 00111223345778999999999999999999999999999888777665 4555 8
Q ss_pred cEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchH
Q 009090 267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (544)
Q Consensus 267 d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~ 340 (544)
|++++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|.++..++.....
T Consensus 231 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~-------- 301 (480)
T 3t5a_A 231 SALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT-------- 301 (480)
T ss_dssp EEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC--------
T ss_pred CeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC--------
Confidence 99999999999999775 6778999999999863 899999999999999 88899888776542110
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC------CceEEe
Q 009090 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQG 414 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~ 414 (544)
....... .+++||.+++||+++++++.++|++.++ ..+++.
T Consensus 302 -------------------------~~~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (480)
T 3t5a_A 302 -------------------------DDDMAGR--------DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPS 348 (480)
T ss_dssp -------------------------TGGGTTC--------CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEE
T ss_pred -------------------------ccccccc--------chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccc
Confidence 0011111 2248999999999999999999999884 369999
Q ss_pred eccccccCceeeccCCC------------------------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEE
Q 009090 415 YGLTETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470 (544)
Q Consensus 415 YG~tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v 470 (544)
||+||++.+++...... .....++|+|++ ++++|+| +++ ..+++.|+.|||+|
T Consensus 349 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v 425 (480)
T 3t5a_A 349 YWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWV 425 (480)
T ss_dssp EEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEE
T ss_pred ccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEE
Confidence 99999998877765432 123358999999 9999999 442 35567789999999
Q ss_pred ecCCccccccCChhhhhhcc------------cCCccccCceEEEccCCcEEEEee
Q 009090 471 RGKTLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (544)
Q Consensus 471 ~~~~v~~gy~~~~~~~~~~~------------~~g~~~TGDlg~~~~~g~l~~~GR 514 (544)
+|+.++.||+++|+.+.+.| .+|||+|||+|++| ||+|+++||
T Consensus 426 ~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred eCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999999988 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.1e-39 Score=325.54 Aligned_cols=242 Identities=19% Similarity=0.138 Sum_probs=204.3
Q ss_pred CCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 009090 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (544)
Q Consensus 219 ~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 298 (544)
.+++++|+|||||||.||||++||+++.+.+..+...+ +++++|++++++|++|.+|+...+.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46889999999999999999999999999998887777 8899999999999999999988888999999999886
Q ss_pred CChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHH
Q 009090 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (544)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (544)
.. ...++.++++++|++.++|+++..+++.... ..++
T Consensus 111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l---- 147 (358)
T 4gs5_A 111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV---- 147 (358)
T ss_dssp CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence 52 2345678899999999999999888652110 0112
Q ss_pred HHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCC
Q 009090 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (544)
Q Consensus 379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~ 458 (544)
++||.+++||+++++++.+++++. ++++++.||+||+++.++......... +++|.+.|++++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheeccccc-CceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 389999999999999999999874 999999999999998877766554433 7889999999888744
Q ss_pred CCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHh--
Q 009090 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (544)
Q Consensus 459 ~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l-- 536 (544)
.|||+++|+.. .+|||+|||+|++|+|| ++++||.||+|++ +|++|+|.+||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998632 37899999999999888 6677999999997 89999999999877
Q ss_pred -hcCCCccC
Q 009090 537 -CVAPIIED 544 (544)
Q Consensus 537 -~~~~~V~~ 544 (544)
.+||+|.+
T Consensus 272 ~~~~p~V~~ 280 (358)
T 4gs5_A 272 VFHHLNIGN 280 (358)
T ss_dssp HHHHHTCCC
T ss_pred hccCCCccE
Confidence 46788764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.9e-38 Score=326.37 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=214.1
Q ss_pred CCCC-CCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 009090 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (544)
Q Consensus 216 ~~~~-~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~ 293 (544)
...+ +++++++|||||||.||+|.++|+++...+..+...+.. .++.++|+++...|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 889999999999999999999999998777665433211 2678999999999987655554 46667899999
Q ss_pred EEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHH
Q 009090 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (544)
Q Consensus 294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (544)
+++.+. ++..+++.++++++|+++++|+++..|++........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------------------ 202 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------------------------ 202 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------------------------
Confidence 998765 8999999999999999999999999987654332110
Q ss_pred hHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeec
Q 009090 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (544)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (544)
...+++|.+++||+++++++.+++++.||+++++.||+||+++.++...... ....+.+.++++++|+|
T Consensus 203 -------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~g~~~~~~~~~v~i~d- 271 (436)
T 3qov_A 203 -------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---QNGMHFWEDCYLVEIID- 271 (436)
T ss_dssp -------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---CSSEEECTTTEEEEEEC-
T ss_pred -------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---CCeeEEccCceEEEEEE-
Confidence 0024899999999999999999999999999999999999965433222111 12356677899999998
Q ss_pred CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCC------c---EEEEeeccceeecCC
Q 009090 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQ 523 (544)
Q Consensus 453 ~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g------~---l~~~GR~~d~i~~~~ 523 (544)
+++ ..+++.|+.|||+|+|. +.+.|.++||+|||+|+++++| + +++.||.||+|++ +
T Consensus 272 ~~~-g~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~ 337 (436)
T 3qov_A 272 PET-GEPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-K 337 (436)
T ss_dssp TTT-CSBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-T
T ss_pred CCC-CCCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-C
Confidence 333 35677889999999983 2334578999999999999998 5 6999999999998 7
Q ss_pred CceechHhHHHHhhcCCCccC
Q 009090 524 GEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 524 g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++|+|.+||++|.+||+|.+
T Consensus 338 G~~v~p~eiE~~l~~~p~v~~ 358 (436)
T 3qov_A 338 GVNIFPMQVEKILVQFPELGS 358 (436)
T ss_dssp TEEECHHHHHHHHTTCTTEEE
T ss_pred CEEECHHHHHHHHHhCcCcCC
Confidence 999999999999999999863
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=8.7e-38 Score=321.58 Aligned_cols=266 Identities=19% Similarity=0.185 Sum_probs=213.9
Q ss_pred CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 009090 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (544)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~ 294 (544)
...++++++++|||||||.||+|.+||+++...+..+...+.. .++.++|+++...|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 4467889999999999999999999999988776554432211 267889999999998 6777777777889999999
Q ss_pred EEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHh
Q 009090 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (544)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (544)
++.+. ++..+++.++++++|+++++|+++..|++.........
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 207 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------ 207 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88766 99999999999999999999999999876543211000
Q ss_pred HHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCc-eeeccCCCccccCccCcCccCceEEEeec
Q 009090 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (544)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (544)
..+++|.+++||+++++++.+++++.+|+++++.||+||+++. +........ ...+.+.+++.++|+|
T Consensus 208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 276 (437)
T 2y27_A 208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID- 276 (437)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence 0138999999999999999999999899999999999998543 332222111 1245567899999998
Q ss_pred CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc-CCcE-----EEEeeccceeecCCCce
Q 009090 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY 526 (544)
Q Consensus 453 ~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~g~l-----~~~GR~~d~i~~~~g~~ 526 (544)
+++ ..+++.|+.|||+|+|. +.+.|.++||+|||+|++++ +|++ ++.||.||+|++ +|++
T Consensus 277 ~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~ 342 (437)
T 2y27_A 277 PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN 342 (437)
T ss_dssp TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence 432 35677889999999982 33445789999999999998 6985 899999999998 8999
Q ss_pred echHhHHHHhhcCCCccC
Q 009090 527 VALEYLENVYCVAPIIED 544 (544)
Q Consensus 527 v~~~~iE~~l~~~~~V~~ 544 (544)
|+|.+||++|.+||+|.+
T Consensus 343 v~p~eiE~~l~~~p~V~~ 360 (437)
T 2y27_A 343 VFPTQIEEQLLKQRALAP 360 (437)
T ss_dssp ECHHHHHHHHTTCTTBCS
T ss_pred ECHHHHHHHHHhCcCcCc
Confidence 999999999999999964
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=9.8e-38 Score=321.77 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=213.0
Q ss_pred CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 009090 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (544)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~ 294 (544)
...++++++++|||||||.||+|.++|+++......+...+.. .++.++|+++...|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 3467889999999999999999999999988776554432211 267899999999998 5777766677788999999
Q ss_pred EEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHh
Q 009090 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (544)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (544)
++.+. ++..+++.++++++|+++++|+++..|++........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------------------------- 208 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD------------------------------------- 208 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------------------------
Confidence 88766 9999999999999999999999999887653321100
Q ss_pred HHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCc-eeeccCCCccccCccCcCccCceEEEeec
Q 009090 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (544)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (544)
+ ..+++|.+++||+++++++.+++++.+|+++++.||+||+++. +........ ...+.+.+++.++|+|
T Consensus 209 ~------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 278 (443)
T 2y4o_A 209 P------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID- 278 (443)
T ss_dssp G------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred c------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence 0 0138999999999999999999999999999999999998543 332221111 1244567899999998
Q ss_pred CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC-CcE-----EEEeeccceeecCCCce
Q 009090 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (544)
Q Consensus 453 ~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-g~l-----~~~GR~~d~i~~~~g~~ 526 (544)
+++ ..+++.|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.||+|++ +|++
T Consensus 279 ~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 279 PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 432 35667889999999983 233456899999999999999 986 899999999998 7999
Q ss_pred echHhHHHHhhcCCCccC
Q 009090 527 VALEYLENVYCVAPIIED 544 (544)
Q Consensus 527 v~~~~iE~~l~~~~~V~~ 544 (544)
|+|.+||++|.+||+|.+
T Consensus 345 v~p~eiE~~l~~~p~V~~ 362 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSG 362 (443)
T ss_dssp ECHHHHHHHHHTSTTEEE
T ss_pred ECHHHHHHHHHhCcCcCc
Confidence 999999999999999853
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=4e-28 Score=243.75 Aligned_cols=236 Identities=17% Similarity=0.167 Sum_probs=172.6
Q ss_pred CCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 009090 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (544)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~~ 295 (544)
..++++++++|||||||.||+|.++|+++...+..+...+.. .++.++|+++...|+ +|..++...+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EE
Confidence 367889999999999999999999999999988754433211 267889999999999 99999888777788999 44
Q ss_pred Eec-CChh-----------------------hHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 296 YYH-GDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 296 ~~~-~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
+.. .++. .+++.++++++|++.++|+++..|++.....
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~------------------ 226 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV------------------ 226 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH------------------
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh------------------
Confidence 443 3666 7777999999999999999999987642211
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHH-Hhc-CCceEEeeccccccCceeeccC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFP 429 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~i~~~YG~tE~~~~~~~~~~ 429 (544)
..++ +++|.+++||+++++++.++++ +.| ++.+++.||+||+++++..++.
T Consensus 227 -------------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~ 279 (369)
T 3hgu_A 227 -------------------LQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279 (369)
T ss_dssp -------------------HHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred -------------------cccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence 1112 2899999999999999999999 899 8999999999999877654321
Q ss_pred CCccccCccCcC------ccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEE
Q 009090 430 DEMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (544)
Q Consensus 430 ~~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 503 (544)
.++|.+ .++++++|+| +++ ..+++.|+.|||+|++.... .+ --+|+|||++..
T Consensus 280 ------~~~G~~~~~~~~~~~~~v~ivD-~~~-g~~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~ 338 (369)
T 3hgu_A 280 ------TSESQQVIYDSFSPFITYDVVD-SIT-AQTVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIR 338 (369)
T ss_dssp ------CTTCSSCEEECCTTTEEEEEEC-TTT-CSBCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEE
T ss_pred ------ccCCCcccccCCCCCeEEEEEC-CCC-CcCCCCCCceEEEEEEcCcc------------cc-cccccCCceEEE
Confidence 148888 9999999998 422 35677889999999973211 11 123889999988
Q ss_pred ccC--C-------cEEEEeeccceeec
Q 009090 504 LPN--G-------VVKIIDRKKNLIKI 521 (544)
Q Consensus 504 ~~~--g-------~l~~~GR~~d~i~~ 521 (544)
.+. | .+..++|.++..++
T Consensus 339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 339 LPGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp ECCSTTCSSCEEEEEEECC--------
T ss_pred ecCCCCCcCcccccceeccccCCCcee
Confidence 543 2 23344555555554
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.78 E-value=1.1e-07 Score=98.09 Aligned_cols=134 Identities=18% Similarity=0.130 Sum_probs=83.0
Q ss_pred Cc---ccEEEEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccCc-CccCc-eEEEeecCCC
Q 009090 383 GR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVPEM 455 (544)
Q Consensus 383 ~~---lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~~~~~~ 455 (544)
++ +..+++||- ..-...++..+ +.+++ ..|++||+ .+.....+.. .+...+. .+|+. =...++.++.
T Consensus 297 Pnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 297 PNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC--KPEDVSYTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp TTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS--CGGGCCEEECTTSSEEEEEECSTT
T ss_pred CCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC--CcccCceeecCCcEEEEEEecccc
Confidence 57 444455552 33334455544 67777 99999995 2332222211 1112222 23333 2234442221
Q ss_pred C------CCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc----CCcEEEEeeccceeecCCCc
Q 009090 456 G------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGE 525 (544)
Q Consensus 456 ~------~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~g~l~~~GR~~d~i~~~~g~ 525 (544)
. ...+..|+.+||.++..+ |.|+ |++||+.++.. ..++.|.||.+++|++ .|+
T Consensus 371 ~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Ge 433 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSD 433 (581)
T ss_dssp CCSSCEEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSC
T ss_pred CCCcEeCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eee
Confidence 1 122446778999998752 3333 99999999975 3579999999999997 799
Q ss_pred eechHhHHHHhhcC
Q 009090 526 YVALEYLENVYCVA 539 (544)
Q Consensus 526 ~v~~~~iE~~l~~~ 539 (544)
++++.+||++|.+.
T Consensus 434 kl~~~~v~~al~~a 447 (581)
T 4eql_A 434 KTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHH
Confidence 99999999999854
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.71 E-value=2.8e-07 Score=95.22 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=82.1
Q ss_pred Cccc---EEEEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccC-cCccCc-eEEEeecCCC
Q 009090 383 GRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEM 455 (544)
Q Consensus 383 ~~lr---~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~~~~ 455 (544)
+++| .+++|| + ..-...++..+ +.+++ ..|++||+. +.....+.. .++..+ ..+|+. =...++.++.
T Consensus 302 Pnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~ 375 (609)
T 4b2g_A 302 PNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHS 375 (609)
T ss_dssp TTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSCEEEEEEGGGT
T ss_pred CCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCccccccee-eeeecCCCC--CcccCceeecCCcEEEEEEecccc
Confidence 5755 444455 2 22334555444 67777 999999963 333222211 111222 223333 1223332221
Q ss_pred ------C-------CCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc----CCcEEEEeeccce
Q 009090 456 ------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNL 518 (544)
Q Consensus 456 ------~-------~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~g~l~~~GR~~d~ 518 (544)
. ...+..|+.+||.++.. .|.|+ |++||++++.. ...+.|.||.+++
T Consensus 376 ~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~ 439 (609)
T 4b2g_A 376 SIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVL 439 (609)
T ss_dssp TSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred ccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCe
Confidence 0 12345677899999764 34444 99999999974 3689999999999
Q ss_pred eecCCCceechHhHHHHhhc
Q 009090 519 IKISQGEYVALEYLENVYCV 538 (544)
Q Consensus 519 i~~~~g~~v~~~~iE~~l~~ 538 (544)
|++ .|+++++.+||+++.+
T Consensus 440 l~~-~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 440 LSI-DSDKTDEAELQKAVDN 458 (609)
T ss_dssp BCS-SSCCBCHHHHHHHHHH
T ss_pred EEc-cccCCCHHHHHHHHHH
Confidence 997 7999999999999874
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.57 E-value=7.6e-07 Score=91.66 Aligned_cols=136 Identities=21% Similarity=0.159 Sum_probs=82.2
Q ss_pred hCCcccEE--EEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccC-cCccCc-eEEEeecCC
Q 009090 381 LGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPE 454 (544)
Q Consensus 381 ~~~~lr~i--~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~~~ 454 (544)
.=+++++| +++|.. ..-...++..+ +.+++ ..|++||+ .+.....+.. .++..+ ..+|+. =...++.++
T Consensus 300 lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 300 LFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL--SPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp HCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS--CTTTCCEEECTTSCEEEEEEC--
T ss_pred hCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC--CccccceeecCCcEEEEEEeccc
Confidence 34778643 344432 22334555555 67777 89999996 3333222221 111222 233333 112333221
Q ss_pred CC--------CCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC----CcEEEEeeccceeecC
Q 009090 455 MG--------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKIS 522 (544)
Q Consensus 455 ~~--------~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----g~l~~~GR~~d~i~~~ 522 (544)
.. ...+..|+.+||.++..+ |.|+ |++||+.++..- ..+.|.||.++++++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~- 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI- 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-
Confidence 11 123556788999998742 3333 999999999642 479999999999998
Q ss_pred CCceechHhHHHHhhc
Q 009090 523 QGEYVALEYLENVYCV 538 (544)
Q Consensus 523 ~g~~v~~~~iE~~l~~ 538 (544)
.|+++++.+||+++.+
T Consensus 438 ~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 438 NIDKNTERDLQLSVES 453 (581)
T ss_dssp SSCCBCHHHHHHHHHH
T ss_pred eeeECCHHHHHHHHHH
Confidence 7999999999999875
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.71 E-value=1.5 Score=43.82 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=80.3
Q ss_pred CCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCc--hhHHHHHHHHHhcCCEEee
Q 009090 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~ 130 (544)
.++.++.+.. ..|.+|.. ..+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3455554433 14555543 4679999988888888877788999999999888853 3344567888999999887
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhc
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
++. .+.+.+...++..++.+++........+.+
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 755 478899999999999999998887766544
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.56 E-value=1.5 Score=43.77 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=79.8
Q ss_pred CCCCceE-eecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCc--hhHHHHHHHHHhcCCEEee
Q 009090 56 PGNRMLG-WRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (544)
Q Consensus 56 p~~~a~~-~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~ 130 (544)
++.++.+ +. .|.+|.. ..+|...+...+..++..+...|+.++|+++..++.+ ...+...++++..|+.+++
T Consensus 91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 4455533 33 4666654 4678999988888888878788999999999888853 3345567888899999888
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhc
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
+.+. +.+++...+++.++.+++........+.+
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 7654 78899999999999999998887766544
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.58 E-value=1.4 Score=43.87 Aligned_cols=105 Identities=8% Similarity=-0.058 Sum_probs=79.6
Q ss_pred CCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCc--hhHHHHHHHHHhcCCEEeecC
Q 009090 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (544)
Q Consensus 57 ~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~i~ 132 (544)
+.++.+.. -.|.+|.. ..+|...+...+..++..+...++.++|+++...+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44454433 14555543 4679999998888888888888999999999888753 334556788899999988775
Q ss_pred CCCChhHHHHHHHhcCceEEEEccchhhHhhc
Q 009090 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
+ ..++.+...+++.++.+++........+.+
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 194 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAE 194 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHH
Confidence 4 467889999999999999998887766544
No 43
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=85.92 E-value=10 Score=38.39 Aligned_cols=121 Identities=8% Similarity=0.027 Sum_probs=83.5
Q ss_pred CCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchh-HHHHHHHHHhcCCEEeec
Q 009090 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~i 131 (544)
.|+.+|++.. -.|.+|.. ..+|...+...+..... ..++.++|+++..+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4566666554 13455543 46788888777665544 3588999999888885432 344467888899998877
Q ss_pred CCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecC
Q 009090 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (544)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (544)
+ ..+++.+...+++.++.+++........+..........++.++.-.+
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 467899999999999999999988877765544333235555554433
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=80.07 E-value=8.1 Score=37.22 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=70.5
Q ss_pred CCCCCceEeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch--hHHHHHHHHHhcCCEEee
Q 009090 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP 130 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~ 130 (544)
.++.++.+.. ..|.+|..+ .+|...+...+...+..+...|+.++|+++.++|-+. --+...++++..|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455454433 145566544 5688888887776666677779999999999988632 234445566889995554
Q ss_pred cCCCCChh-----------------------HHHHHHHhcCceEEEEccchhhHhhc
Q 009090 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 131 i~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
. ..++. ++..++++.++.++++.......+.+
T Consensus 167 ~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 I--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred c--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 3 33444 67778999999999998887766643
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=75.50 E-value=39 Score=34.32 Aligned_cols=121 Identities=7% Similarity=-0.063 Sum_probs=81.7
Q ss_pred CCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH--HH-HHHHHHhcCCEEe
Q 009090 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~--~~-~~lA~~~~G~~~v 129 (544)
.|+.+|++.. -.|.+|.. ..+|...+...+..... ..++.++|+++..+|-+-.+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4566666544 13445443 47899888777655544 34788999988888865433 22 4788889999988
Q ss_pred ecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccc---ccccccccEEEEecC
Q 009090 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (544)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 181 (544)
..+ ..+++.+...+++.++.+++........+.... ......++.++.-.+
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 467889999999999999999887766654332 123345666655444
No 46
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=73.55 E-value=38 Score=34.52 Aligned_cols=107 Identities=9% Similarity=-0.053 Sum_probs=77.7
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.+|++....+..+ -..-.+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEcc
Confidence 3566777654322111 1235689999998888888776443 688999999998876322 33566778899998887
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHHHHHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (544)
.. ....+...++..++.+++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 75 78889999999999999999887766543
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=71.93 E-value=19 Score=36.85 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=79.9
Q ss_pred CCCceEeecccCCCCCC--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH--HHHHHHHHhcCCEEeecC
Q 009090 57 GNRMLGWRPFVDGKFGP--YVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 132 (544)
Q Consensus 57 ~~~a~~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~v~i~ 132 (544)
+.+|++.. -.|.+|. ...+|...+...+......+...++.++|+++..+|-+-.+ ...+++++ .|+..+.++
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 56665543 1344443 35789998877766554433335788999988887755332 33356777 999888775
Q ss_pred CCCChhHHHHHHHhcCceEEEEccchhhHhhcccc---cccccccEEEEecC
Q 009090 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (544)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 181 (544)
..+++.+...+++.++.+++........+..... .....++.++.-..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 5678999999999999999998887776644321 12344555554333
No 48
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=71.26 E-value=29 Score=35.32 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.++++.. .+| -.+|.+.+...+..+...+.. .++.++|++...++...-+ ....++++..|+..+..
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEecc
Confidence 4667776542 222 468999999888888877644 3688999999998876322 34566778889998887
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHHHHHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (544)
.. ....+...++..++.+++..+.....+.+
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 65 78889999999999999998877766544
No 49
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=70.65 E-value=27 Score=35.18 Aligned_cols=98 Identities=12% Similarity=-0.017 Sum_probs=75.2
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.+|++. .+..+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+..
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRD--GVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEec
Confidence 466777664 125789999999998888777443 688999999998876322 33566778899998887
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHHHHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 327 (544)
+. ..+.+...++..++.+++..+.....+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 76 7888999999999999999887766543
No 50
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=70.38 E-value=36 Score=34.66 Aligned_cols=120 Identities=11% Similarity=-0.022 Sum_probs=79.7
Q ss_pred CCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH---HHHHHHhcCCEEee
Q 009090 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (544)
Q Consensus 56 p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~ 130 (544)
++.+|++.. -.|.+|.. ..+|...+...+...+.. .++.++|+++..+|.+..+-. .+++.+..|+..+.
T Consensus 190 ~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 190 ADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp TTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred ccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 556666544 13444443 478998888777665543 488999999988886544322 37888889998887
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhccc---ccccccccEEEEecC
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 181 (544)
.+ ...+..+...++..++.++.........+.... ......++.++.-..
T Consensus 265 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 265 AP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred CC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 64 457888899999999999999887766554322 122344555554443
No 51
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=70.01 E-value=45 Score=33.89 Aligned_cols=101 Identities=10% Similarity=-0.155 Sum_probs=74.5
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.++++....+ ....+|...+...+..+...+.. .++.++|++...++...-+ ....++++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEec
Confidence 3456666543211 24578999999888888777643 3678999999998866322 33566778889998887
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHHHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (544)
.. ....+...++..++.+++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 66 788899999999999999988766544
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=68.12 E-value=16 Score=37.37 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=69.6
Q ss_pred eeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcE
Q 009090 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (544)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (544)
..+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+.... ...++...++..++.+
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 125 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEeEHHHHHHHHHHHHHHHHHh--CCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence 4689999998888888776543 688999999998865322 3356677888998888765 7888999999999999
Q ss_pred EEeccHHHHHHHH
Q 009090 316 LAGVPRVFEKIHE 328 (544)
Q Consensus 316 l~~~p~~~~~l~~ 328 (544)
++........+.+
T Consensus 126 vi~~~~~~~~~~~ 138 (550)
T 3rix_A 126 VFVSKKGLQKILN 138 (550)
T ss_dssp EEECGGGHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 9999887766544
No 53
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=68.07 E-value=52 Score=32.61 Aligned_cols=107 Identities=12% Similarity=0.009 Sum_probs=77.0
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.+|++.........-....+|.+.+...+..+...+... +. ++|++...++...-+ ....++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 467778776543221112346899999999999888887543 34 889999888876322 33566778899988877
Q ss_pred cC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHH
Q 009090 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (544)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (544)
.. ..+++...++..++.+++..+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 46788889999999999999887766543
No 54
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=67.75 E-value=28 Score=35.74 Aligned_cols=122 Identities=10% Similarity=0.001 Sum_probs=84.2
Q ss_pred CCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch-hHHHHHHHHHhcCCEEeec
Q 009090 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPL 131 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~-~~~~~~lA~~~~G~~~v~i 131 (544)
.|+.+|++.. --|.+|.. ..+|...+...... ....++.++|+++...|-+- -....+++.+..|+.++.+
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4566666544 13444443 47788877543221 22347899999998888653 3455678888999988877
Q ss_pred CC-CCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCC
Q 009090 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (544)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (544)
.. ...+..+...+++.++.++.........+.+........++.++.-...
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 54 5677899999999999999999888777765555555667777665553
No 55
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=67.19 E-value=35 Score=34.46 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=76.0
Q ss_pred CCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH--HHHHHHHHhcCCEEeec
Q 009090 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPL 131 (544)
Q Consensus 56 p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~v~i 131 (544)
|+.+|++.. -.|.+|.. ..+|...+...+...+.. .++.++|+++..+|-.-.. ...+++++ .|+..+..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 455555443 13555543 478888887776665543 4889999999888865433 22345555 88888776
Q ss_pred CCCCChhHHHHHHHhcCceEEEEccchhhHhhccc---ccccccccEEEEecC
Q 009090 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (544)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 181 (544)
+..++..+...++..++.++.........+.... ......++.++.-..
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 4578899999999999999999888776654322 112234555554433
No 56
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=67.15 E-value=36 Score=35.45 Aligned_cols=122 Identities=13% Similarity=0.022 Sum_probs=84.3
Q ss_pred CCCCCceEeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH-HHHHHHHHhcCCEEeec
Q 009090 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~i 131 (544)
.|+.+|++..- -|.+|..+ .+|...+...+. .....++.++|+++...+-+-+. +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 35666655431 45566544 678877654332 22235889999999998866543 44578888999988776
Q ss_pred C-CCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCC
Q 009090 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (544)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (544)
+ ...+++.+..++++.++.++.........+..........++.++.-.+.
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 35678899999999999999998888777655444555667777766554
No 57
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=66.52 E-value=37 Score=34.19 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=79.1
Q ss_pred CCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchh-HHHHHHHHHhcCCEEeecC
Q 009090 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPLY 132 (544)
Q Consensus 56 p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~i~ 132 (544)
++.+|++.. -.|.+|.. ..+|+..+...+..... ..++.++|+++..+|-+-. .+..+++++..|+..+.++
T Consensus 143 ~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 143 GDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp TTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 455555443 13555543 46788888766655443 4588999999998886533 3456788889999988876
Q ss_pred CC--CChhHHHHHHHhcCceEEEEccchhhHhhccc---ccccccccEEEEecC
Q 009090 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (544)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 181 (544)
+. .++..+...+++.++.+++........+.... ......++.++.-..
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 53 46788999999999999999888776654332 122345555555443
No 58
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=65.19 E-value=13 Score=35.70 Aligned_cols=120 Identities=18% Similarity=0.097 Sum_probs=74.4
Q ss_pred cCCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchh-HHHHHHHHHhcCCEEee
Q 009090 54 KYPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVP 130 (544)
Q Consensus 54 ~~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~ 130 (544)
-+.|.+|++..- -|.+|.. ..+|+..+...+..++. ..+++++|+++..+|-+-. .+..++..+..|+..+.
T Consensus 34 w~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~ 108 (358)
T 4gs5_A 34 WLGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTV 108 (358)
T ss_dssp HHHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEe
Confidence 344555555431 4666654 47899988776655544 3588999999988885532 34445666777887776
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhccc--ccccccccEEEEecC
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD--CRSAQRLRVMVCFTS 181 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 181 (544)
..+.... ...++..++.++.........+.+.. ......++.++.-..
T Consensus 109 ~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 109 TEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp ECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred cCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEccc
Confidence 6654332 34577889999988887766654322 223344555554433
No 59
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=63.42 E-value=57 Score=32.80 Aligned_cols=121 Identities=9% Similarity=-0.101 Sum_probs=80.9
Q ss_pred CCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH-HHHHHHHHhcCCEEeecC
Q 009090 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (544)
Q Consensus 56 p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~i~ 132 (544)
++.+|++.. -.|.+|.. ..+|...+...+..+.. ..++.++|+++...|-+... +..+++++..|+.++.+.
T Consensus 142 ~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 142 EHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp TTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 455555443 14556654 46788888776655443 45789999999888866443 445788899999988775
Q ss_pred CC--CChhHHHHHHHhcCceEEEEccchhhHhhccc---ccccccccEEEEecC
Q 009090 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (544)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 181 (544)
.. ..+..+...+++.++.+++........+.... ......++.++.-.+
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 42 46788999999999999999888776654332 122334555554443
No 60
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=62.51 E-value=31 Score=32.66 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=47.9
Q ss_pred HHHHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 92 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 92 ~L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
.+.+.| +++|++|++....+-.-..+.++|...|..++.+-|...+.+-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 488988756656566667777888888998776656555556677889999999999764
No 61
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=62.51 E-value=57 Score=32.69 Aligned_cols=98 Identities=15% Similarity=0.064 Sum_probs=70.8
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.++++.. . .+..+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+..
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~--Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHAD--GLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEec
Confidence 4556676542 1 135789999998888887776443 678999999998876432 33566778899998887
Q ss_pred cC--ChhhHHHHhhhhCCcEEEe--ccHHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAG--VPRVFEK 325 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~--~p~~~~~ 325 (544)
+. ...++...+++.+++.++. .+.....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 76 7888999999999999988 6554433
No 62
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=62.01 E-value=63 Score=33.04 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=71.0
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.+|++. . .-.+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+..
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEe
Confidence 456677653 1 24689999988888877766433 678999999998876322 33466778889998887
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRVFE 324 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~ 324 (544)
.. ....+...++..++.+++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 66 7888999999999999999876544
No 63
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=61.52 E-value=59 Score=34.12 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhh-cccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEE
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~-~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~ 296 (544)
.++.+|++.... .+| ....+|.+.|...+..+...+. . .++.++|++...+|..--. ....++++..|+..+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~--~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYS--MGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHT--SCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEe
Confidence 466778775432 122 2357899999998888887764 3 3688999999999976422 3456778888998887
Q ss_pred ecC--ChhhHHHHhhhhCCcEEEeccHH
Q 009090 297 YHG--DLNALRDDLMELKPTLLAGVPRV 322 (544)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~l~~~p~~ 322 (544)
... .+..+...+++.++.+++.....
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 765 78899999999999999987653
No 64
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=61.11 E-value=41 Score=33.82 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=67.6
Q ss_pred eeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcE
Q 009090 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (544)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (544)
-.+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+.... ...++...+++.++.+
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 3589999999888888776443 688999999998876322 3356677889998888766 7888999999999999
Q ss_pred EEeccHHHHHH
Q 009090 316 LAGVPRVFEKI 326 (544)
Q Consensus 316 l~~~p~~~~~l 326 (544)
++..+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99988765443
No 65
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=59.48 E-value=1e+02 Score=31.74 Aligned_cols=121 Identities=10% Similarity=-0.035 Sum_probs=80.5
Q ss_pred CCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH---HHHHHHhcCCEEee
Q 009090 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (544)
Q Consensus 56 p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~ 130 (544)
|+.+|++.. -.|.+|.. ..+|...+...+...... .++.++|+++...|-+..+-. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 456665543 13555543 578998887766655443 478899999988885543322 47888888998887
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccc-----cccccccEEEEecCC
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 182 (544)
... .+...+...++..+++++.........+..... .....++.++.-.+.
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 654 567888899999999999998877665543221 133456666655443
No 66
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=57.91 E-value=84 Score=32.25 Aligned_cols=98 Identities=9% Similarity=0.038 Sum_probs=73.8
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.+|++..... | ....+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~--Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKH--GIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeC
Confidence 5677887765321 2 246789999998888888776443 788999999998876332 33466678889988877
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRV 322 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~ 322 (544)
.. .+..+...++..++.+++..+..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecch
Confidence 65 78889999999999999987653
No 67
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=57.47 E-value=1.1e+02 Score=31.31 Aligned_cols=103 Identities=12% Similarity=0.017 Sum_probs=74.5
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.++++.... .| ....+|.+.+...+..+...+... .++.++|++...++...-+ ....++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~-~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGA-CGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTT-TCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHc-cCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEec
Confidence 456677765421 11 236789999998888887766321 1577899999998876422 33566778889988877
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHHHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (544)
.. ....+...++..++.+++..+.....+
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 130 TIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 65 788899999999999999988766554
No 68
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=56.73 E-value=47 Score=33.57 Aligned_cols=87 Identities=8% Similarity=-0.111 Sum_probs=68.0
Q ss_pred eeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcE
Q 009090 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (544)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (544)
..+|...+...+..+...+.. .++.++|++...++...-+ ....++++..|+..+.... .+.++...+++.++..
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 458999999888888777643 3678999999998876432 3356677888998887765 7888999999999999
Q ss_pred EEeccHHHHHHH
Q 009090 316 LAGVPRVFEKIH 327 (544)
Q Consensus 316 l~~~p~~~~~l~ 327 (544)
++..+.....+.
T Consensus 124 vi~~~~~~~~~~ 135 (529)
T 2v7b_A 124 VIASGALVQNVT 135 (529)
T ss_dssp EEEEGGGHHHHH
T ss_pred EEechhhhhHHH
Confidence 999887765543
No 69
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=54.84 E-value=99 Score=31.59 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=74.2
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.++++.... ...-.+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+..
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~--gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQAE--GAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEe
Confidence 466777765541 1245789999999888888777443 678999999998876432 33566788999988877
Q ss_pred cC-----ChhhHHHHhhhhCCcEEEeccHHHHHH
Q 009090 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKI 326 (544)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (544)
.. ....+...+...++.+++........+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 129 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 65 235677888899999999988766554
No 70
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=54.74 E-value=82 Score=32.90 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=72.4
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.+|++.... .+| ....+|.+.+...+..+...+... ++.++|++...+|...-+ ....++++..|+..+..
T Consensus 89 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~--Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLDL--GIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEec
Confidence 356677765322 122 235789999998888887776443 688999999999876432 34567778889888877
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPR 321 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~ 321 (544)
.. .++.+...+++.++.+++....
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 65 7889999999999999988654
No 71
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=49.53 E-value=73 Score=30.22 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=49.6
Q ss_pred HHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 94 ~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
.+.| +++|.+.++....+-.-..+.++|.++|..+..+-|...+.+-...++..++++++++..
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444 678877677777777778888899999998777766666667778899999999998753
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=47.83 E-value=1.2e+02 Score=30.44 Aligned_cols=103 Identities=10% Similarity=-0.075 Sum_probs=71.0
Q ss_pred CCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchh--HHHHHHHHHhcCCEEee
Q 009090 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 130 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~ 130 (544)
.|+.+|++..- .|.+|.. ..+|...+...+..+...+ ++.++|+++..+|..-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35555655431 4555554 4788998888777665544 78899998887775432 23347888899998887
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhc
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
. +..+.+.+...+ +.++.+++........+..
T Consensus 228 ~-~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 L-GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp C-SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 6 456677777777 6789999888877665543
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=47.63 E-value=49 Score=36.62 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=74.6
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 297 (544)
.++.++++.. .+| ..+|.+.+...+..+...+... ++.++|++...++...-+ ....+.++..|+..+..
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKL--GVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHc--CCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEee
Confidence 4677777642 222 4689999998888888776443 688999999998876322 33566788899998887
Q ss_pred cC--ChhhHHHHhhhhCCcEEEeccHHHHHH
Q 009090 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (544)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (544)
.. .+..+...+++.++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 76 788899999999999999987765544
No 74
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=46.73 E-value=91 Score=31.30 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=62.1
Q ss_pred eeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcE
Q 009090 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (544)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (544)
-.+|...+...+..+...+... ++.++|++...++...-+ ....++++..|+..+.... .+..+...++..++.+
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~--g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSL--ALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 4589999988888887776443 678899998888775322 3356677888988887765 7888999999999999
Q ss_pred EEeccH
Q 009090 316 LAGVPR 321 (544)
Q Consensus 316 l~~~p~ 321 (544)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 75
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.03 E-value=1.4e+02 Score=25.92 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEe------ccHH--HHHHHHHHH
Q 009090 264 TVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAG------VPRV--FEKIHEGIK 331 (544)
Q Consensus 264 ~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~------~p~~--~~~l~~~~~ 331 (544)
..+.+++...+. .|..|.......+...+.=++.-+ +++.+.+.+.+++++++.. ++.+ +..+++.++
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcc---cEEEEcCCCCCHHHHHHH
Q 009090 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL---RLVISGGAPLSTEVEEFL 403 (544)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---r~i~~~G~~l~~~~~~~~ 403 (544)
+. .+ -.+++||.+++++..+.+
T Consensus 171 ~~--------------------------------------------------~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 171 EE--------------------------------------------------KLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp HT--------------------------------------------------TCGGGSEEEEESSSCCHHHHHHH
T ss_pred Hc--------------------------------------------------CCCCCCEEEEECCCCCHHHHHHh
No 76
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=42.93 E-value=67 Score=30.26 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=51.2
Q ss_pred eeHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEE
Q 009090 77 KTYKEVYEEVLQ--IV-SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (544)
Q Consensus 77 ~Ty~el~~~~~~--la-~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 153 (544)
+++.+....... .| +.|...++++|++|+|...-+.-.++++++....|+.++.++.. +++ ..+++..+++.++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 566664333222 22 33556699999999999887777788888877778877766543 333 4566778888776
Q ss_pred Ec
Q 009090 154 VQ 155 (544)
Q Consensus 154 ~~ 155 (544)
-.
T Consensus 214 ~~ 215 (348)
T 4eez_A 214 NS 215 (348)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=40.67 E-value=1.8e+02 Score=29.32 Aligned_cols=99 Identities=10% Similarity=-0.062 Sum_probs=69.6
Q ss_pred CCCCeEEEEecCCCCCCC--ceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEE
Q 009090 218 QPFNICTIMYTSGTSGDP--KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG 295 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~p--K~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~ 295 (544)
.++.++++.... ..+.. ..-.+|.+.+...+..+...+... +. ++|++...++...-+ ....++++..|+..+
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHA--SL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHT--TC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEE
Confidence 466777765432 22222 235789999999888888776443 45 689999988876432 335667788999888
Q ss_pred EecC--ChhhHHHHhhhhCCcEEEeccH
Q 009090 296 YYHG--DLNALRDDLMELKPTLLAGVPR 321 (544)
Q Consensus 296 ~~~~--~~~~~~~~i~~~~~t~l~~~p~ 321 (544)
.... ....+...++..++.+++....
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 8765 7888999999999998887543
No 78
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=39.74 E-value=1.6e+02 Score=29.80 Aligned_cols=87 Identities=9% Similarity=-0.104 Sum_probs=67.0
Q ss_pred eeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--C-------hhhHHHH
Q 009090 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--D-------LNALRDD 307 (544)
Q Consensus 237 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~-------~~~~~~~ 307 (544)
.-.+|.+.+...+..+...+... ++.++|++...++...-+ ....++++..|+..+.... . ...+...
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 35789999999888888776443 678999999998876422 3356678899998887754 2 5778888
Q ss_pred hhhhCCcEEEeccHHHHHH
Q 009090 308 LMELKPTLLAGVPRVFEKI 326 (544)
Q Consensus 308 i~~~~~t~l~~~p~~~~~l 326 (544)
++..++..++........+
T Consensus 124 l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHCCSEEEECGGGHHHH
T ss_pred HHhcCCCEEEecHHHHHHH
Confidence 9999999999988766554
No 79
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=38.91 E-value=1.3e+02 Score=28.03 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=43.9
Q ss_pred HHHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.+.| +++|...++....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34555 466754444455555666667778899997777655544555667888999999998754
No 80
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=38.27 E-value=1.3e+02 Score=29.60 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=46.3
Q ss_pred HHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEcc
Q 009090 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 94 ~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (544)
.+.| +++|...++....+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47776555566666666777778889999877665655566667788999999999974
No 81
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=37.83 E-value=95 Score=35.61 Aligned_cols=122 Identities=9% Similarity=-0.051 Sum_probs=81.9
Q ss_pred CCCCCceEeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH-HHHHHHHHhcCCEEeec
Q 009090 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~i 131 (544)
.|+.+|.+..- -|.+|..+ .+|...+... .......++.++|+++...+-+-+. +.-+++.+..|+.++..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 45666554431 45666544 6788777532 1122234889999998888776554 34478888999988877
Q ss_pred CC--CCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCC
Q 009090 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (544)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (544)
++ ..++..+...++..++.++.........+..........++.++.-.+.
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 65 4577899999999999999998887776654333334566666665543
No 82
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=36.45 E-value=1.6e+02 Score=27.31 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=42.7
Q ss_pred HHHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.+.| +++|++|+. ...+-.-..+.++|.+.|..+..+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 44455 467776655 44444455566677799997776655544455566788999999998863
No 83
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=34.51 E-value=1.7e+02 Score=27.00 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=42.2
Q ss_pred HHHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.+.| +++|++|+- ...+-.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 367766554 44444455666777789987776655444455566778999999998764
No 84
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=34.21 E-value=1.3e+02 Score=28.23 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=39.4
Q ss_pred CCCCCCEEEEEecCch------hHHH-HHHHHHhcCCEEeecCCCC------------ChhHHHHHHHhcCceEEEEcc
Q 009090 97 GAEPGCRVGIYGANCP------QWVE-AMEACNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 97 gl~~gd~V~l~~~n~~------~~~~-~~lA~~~~G~~~v~i~~~~------------~~~~l~~~l~~~~~~~vi~~~ 156 (544)
-+++||+|+|++|.+. +.+- +.--+-..|..++.-.... -.++|..++.+-.++.|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5799999999999753 1121 2222335688776543221 124688888888999999975
No 85
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=33.28 E-value=98 Score=21.87 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=34.6
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCE
Q 009090 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (544)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 127 (544)
..+.+.++.+. +.+.++.+++.|+++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 56777776543 44456788899999999988887777777788863
No 86
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=32.06 E-value=78 Score=28.77 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEecCc
Q 009090 87 LQIVSALRASGAEPGCRVGIYGANC 111 (544)
Q Consensus 87 ~~la~~L~~~gl~~gd~V~l~~~n~ 111 (544)
..|.+.|++.|+++||+|+|.+.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567788899999999999998743
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.40 E-value=1.5e+02 Score=27.85 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=40.0
Q ss_pred CCCCCCEEEEEecCchh------HHHHHHH-HHhcCCEEeecCCCC--------C----hhHHHHHHHhcCceEEEEccc
Q 009090 97 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL--------G----PGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 97 gl~~gd~V~l~~~n~~~------~~~~~lA-~~~~G~~~v~i~~~~--------~----~~~l~~~l~~~~~~~vi~~~~ 157 (544)
-+++||+|+|++|.+.- .+-.... +-..|..++.-.... + .++|..++.+-.++.|+|..-
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58999999999998832 2222222 234688877532111 1 246888888888999999763
No 88
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=31.37 E-value=1.2e+02 Score=28.44 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=47.1
Q ss_pred eeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEE
Q 009090 77 KTYKEVYEEVLQ---IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (544)
Q Consensus 77 ~Ty~el~~~~~~---la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 153 (544)
+++.+....... ..+.|.+.++++|++|+|...-.+-.+++.+|- ..|+.++.+... ++++ .++++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKK-QDALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTH-HHHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHH-HHHHhcCCCeec
Confidence 566665422111 123466668999999999987556777777765 568877666543 2333 355778888887
No 89
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=31.06 E-value=1.1e+02 Score=28.33 Aligned_cols=74 Identities=11% Similarity=-0.030 Sum_probs=48.4
Q ss_pred eeHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEEe-cCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEE
Q 009090 77 KTYKEVYEEVLQ--IV-SALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (544)
Q Consensus 77 ~Ty~el~~~~~~--la-~~L~~~gl~~gd~V~l~~-~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 152 (544)
+++.+....... .| +.|...++++|++|+|.. .-.+-.+++.+|- ..|+.++.+. +.++ ..++++.+++.+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 566665443222 22 335556899999999996 5566777766665 5688766553 3445 566788888877
Q ss_pred EEc
Q 009090 153 FVQ 155 (544)
Q Consensus 153 i~~ 155 (544)
+..
T Consensus 201 i~~ 203 (321)
T 3tqh_A 201 INY 203 (321)
T ss_dssp EET
T ss_pred EeC
Confidence 654
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=30.49 E-value=1.7e+02 Score=27.54 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=41.8
Q ss_pred HHHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.+.| +++|++|+-... +-.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 467776655543 44445556667788987766655444555667888999999998763
No 91
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=30.45 E-value=1.5e+02 Score=27.70 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=48.9
Q ss_pred eeHHHHHHHHH---HHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEE
Q 009090 77 KTYKEVYEEVL---QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (544)
Q Consensus 77 ~Ty~el~~~~~---~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 153 (544)
+++.+...... -..+.|...++++|++|++....++-.+++.+|- ..|+.++.+.. +++.+ .++++.+++.++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEEE
Confidence 66666542211 1123455568999999999877666777777766 56887766644 34443 456788888877
Q ss_pred Ecc
Q 009090 154 VQD 156 (544)
Q Consensus 154 ~~~ 156 (544)
...
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 543
No 92
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=29.92 E-value=1.5e+02 Score=28.05 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=44.0
Q ss_pred HHHHH--cCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEcc
Q 009090 91 SALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 91 ~~L~~--~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (544)
+.|.+ .++++|++|+|...-.+-.+++.+|-...|+.++.+.. +++++ .+++..+++.++-..
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 34556 68999999999988667777777777544887665544 23443 445678888877543
No 93
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=29.18 E-value=2.4e+02 Score=25.88 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=41.6
Q ss_pred HHHcC-CCCCC--EEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 93 LRASG-AEPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 93 L~~~g-l~~gd--~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.+.| +++|+ +|+. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 56676 4433 33444445566777799987776655444455667788899999998864
No 94
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.89 E-value=1.7e+02 Score=28.10 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=39.8
Q ss_pred CCCCCCEEEEEecCchh------HHHHHHH-HHhcCCEEeecCCCC--------C----hhHHHHHHHhcCceEEEEcc
Q 009090 97 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL--------G----PGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 97 gl~~gd~V~l~~~n~~~------~~~~~lA-~~~~G~~~v~i~~~~--------~----~~~l~~~l~~~~~~~vi~~~ 156 (544)
-+++||+|+|++|.+.- .+-.... +-..|..++.-.... + .++|..++.+-.+++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68999999999998732 2222222 234788877543211 1 24677888888889999975
No 95
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=28.82 E-value=1.7e+02 Score=22.75 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeec--CCCCChhH
Q 009090 89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL--YDTLGPGA 139 (544)
Q Consensus 89 la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i--~~~~~~~~ 139 (544)
.+.+|.+.|+.++..+.+...+..+.+.++-=+++.|...+.+ -+..+..+
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~ 98 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAA 98 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHH
Confidence 4677888999888777777778889999999999998755544 24555544
No 96
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=27.63 E-value=1.8e+02 Score=26.43 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHH
Q 009090 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (544)
Q Consensus 46 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~ 115 (544)
.++++..+.-|+...+.+- |...-++-..|..++.+++.+++.+|.+.|. ..+++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 3556666788998887776 7766677788999999999999999998765 3555555565543
No 97
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.47 E-value=1.9e+02 Score=27.21 Aligned_cols=60 Identities=5% Similarity=0.021 Sum_probs=39.8
Q ss_pred CCCCCCEEEEEecCchh------HHHHHHHH-HhcCCEEeecCCCC--------C----hhHHHHHHHhcCceEEEEcc
Q 009090 97 GAEPGCRVGIYGANCPQ------WVEAMEAC-NALSLICVPLYDTL--------G----PGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 97 gl~~gd~V~l~~~n~~~------~~~~~lA~-~~~G~~~v~i~~~~--------~----~~~l~~~l~~~~~~~vi~~~ 156 (544)
-+++||+|+|++|.+.- .+-..... -..|..++.-.... + .++|..++++-.++.|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47999999999998742 22222222 34688877543211 1 24688888888899999975
No 98
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=27.34 E-value=2.4e+02 Score=26.25 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=44.1
Q ss_pred HHHcC-CCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.+.| ++++++|+-. ..+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 5677776554 4455556667777888988776656555556677889999999999753
No 99
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=27.27 E-value=1.7e+02 Score=27.38 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=44.7
Q ss_pred HHHHHc--CCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 91 SALRAS--GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 91 ~~L~~~--gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.|.+. ++++|++|++...-.+-.+++.+|-..-|+.++.++. +++. ..+++..+++.++...+
T Consensus 160 ~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~~i~~~~ 225 (345)
T 3jv7_A 160 HAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADAAVKSGA 225 (345)
T ss_dssp HHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSEEEECST
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCEEEcCCC
Confidence 345553 7899999999987667778888877665666666644 2333 34667888988876544
No 100
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=26.77 E-value=1.2e+02 Score=29.48 Aligned_cols=51 Identities=8% Similarity=-0.085 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCEEEEEecCc-hhH-HHHHHHHHhcCCEEeecC
Q 009090 82 VYEEVLQIVSALRAS--GAEPGCRVGIYGANC-PQW-VEAMEACNALSLICVPLY 132 (544)
Q Consensus 82 l~~~~~~la~~L~~~--gl~~gd~V~l~~~n~-~~~-~~~~lA~~~~G~~~v~i~ 132 (544)
+..+..++|..+.+. .+++|+.|+|.++.. .++ -.+.-++..+|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 345777888888875 689999999999854 333 344667888999877653
No 101
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=26.53 E-value=1.4e+02 Score=28.32 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=41.9
Q ss_pred HHHHcCCC-CCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEcc
Q 009090 92 ALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 92 ~L~~~gl~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (544)
.|.+.+++ +|++|+|.....+-.+++.+|-. .|+.++.+... ++++..+.+..+++.++...
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~ 233 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGS 233 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeeccc
Confidence 35566888 99999999876677777777664 58866555443 34444445578887766543
No 102
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=26.50 E-value=1.7e+02 Score=27.60 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=49.1
Q ss_pred eeHHHHHHH--HHHHHH-HHHH-cCCCCCCEEEEEec-CchhHHHHHHHHHhcCCEEe-ecCCCCChhHHHHHHHhcCce
Q 009090 77 KTYKEVYEE--VLQIVS-ALRA-SGAEPGCRVGIYGA-NCPQWVEAMEACNALSLICV-PLYDTLGPGAVNFILDHAEID 150 (544)
Q Consensus 77 ~Ty~el~~~--~~~la~-~L~~-~gl~~gd~V~l~~~-n~~~~~~~~lA~~~~G~~~v-~i~~~~~~~~l~~~l~~~~~~ 150 (544)
+++.+.... .-..|. .|.+ .++++|++|+|... ..+-.+++.+|- ..|+..+ .....-..++...+++..+++
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 566664332 112232 3444 48999999999987 567777777766 4688544 344443344555677889998
Q ss_pred EEEEc
Q 009090 151 FVFVQ 155 (544)
Q Consensus 151 ~vi~~ 155 (544)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 88754
No 103
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=25.97 E-value=1.5e+02 Score=28.20 Aligned_cols=59 Identities=8% Similarity=-0.093 Sum_probs=37.4
Q ss_pred HHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCC-----CCChhHHHHHHHhcC--ceEEEE
Q 009090 93 LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD-----TLGPGAVNFILDHAE--IDFVFV 154 (544)
Q Consensus 93 L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~-----~~~~~~l~~~l~~~~--~~~vi~ 154 (544)
|...++++||.|++-.+..... .-++...|+.++.++. ..+.+++...+..-+ .++|+.
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3444688999988776654433 3455678988776643 236677888774434 666653
No 104
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=25.53 E-value=2.5e+02 Score=24.04 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=43.5
Q ss_pred CCEEEEEecCc----hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 101 GCRVGIYGANC----PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 101 gd~V~l~~~n~----~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+-+|++.+..+ +-..++...+-..|.-++-+....+.+++...++..+|++|..+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 33676666543 3345555556678999999999999999999999999999987653
No 105
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=25.09 E-value=1.6e+02 Score=28.04 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=40.4
Q ss_pred HHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCC-EEeecCCCCChhHHHHHHHhcCceEEEE
Q 009090 92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL-ICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (544)
Q Consensus 92 ~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 154 (544)
.|...++++|++|+|...-.+-.+++.+|- ..|+ .++.+... ++. ..+++..+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--ATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHcCCCEEEC
Confidence 355568999999999987556666666665 6788 66655442 333 34667778877664
No 106
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=24.98 E-value=1.1e+02 Score=29.43 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=43.8
Q ss_pred CCCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH
Q 009090 16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA 95 (544)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~ 95 (544)
.+.|.+..-+|+.-.+..+| .+..-.+.+.+.+.-++...+++++++ |+ |...+..+|..|.+
T Consensus 17 ~~~~~~~~l~~~~~~~~~l~--~~y~fEi~kti~~I~~~~~krVaLQfP---dg------------Ll~~a~~Ia~~L~~ 79 (378)
T 3lzd_A 17 KAGSAAAVLEENLYFQGSFT--MLHEIPKSEILKELKRIGAKRVLIQSP---EG------------LRREAEELAGFLEE 79 (378)
T ss_dssp -----------------------CCSCCHHHHHHHHHHTTCCEEEEECC---GG------------GHHHHHHHHHHHHT
T ss_pred ccCcHHHhhhhcccCCccCC--ccccccHHHHHHHHHhcCCCEEEEECC---HH------------HHHHHHHHHHHHhh
Confidence 45577777788876655555 345677888888888899999999999 65 67788889999977
Q ss_pred cCCCCCCEEEEEecCch
Q 009090 96 SGAEPGCRVGIYGANCP 112 (544)
Q Consensus 96 ~gl~~gd~V~l~~~n~~ 112 (544)
.|..+.|+.+.+.
T Consensus 80 ----~~~e~~IlgDttY 92 (378)
T 3lzd_A 80 ----NNIEVFLHGEINY 92 (378)
T ss_dssp ----TTCEEEEECSCCC
T ss_pred ----cCceEEEEcCCcc
Confidence 4667888866553
No 107
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=24.84 E-value=2.4e+02 Score=25.82 Aligned_cols=73 Identities=5% Similarity=-0.064 Sum_probs=47.6
Q ss_pred EeeHHHHHHHHH--HHH-HHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEE
Q 009090 76 WKTYKEVYEEVL--QIV-SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (544)
Q Consensus 76 ~~Ty~el~~~~~--~la-~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 152 (544)
.+++.+...... ..| +.|...++++|++|+|.....+-.+++.+|- ..|+.++.+. +++++ .++++.+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhH-HHHHHcCCCEE
Confidence 367777642222 222 3344458999999999988556777777765 5688776665 23333 34577889888
Q ss_pred E
Q 009090 153 F 153 (544)
Q Consensus 153 i 153 (544)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 108
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=24.42 E-value=1.1e+02 Score=29.85 Aligned_cols=51 Identities=16% Similarity=-0.010 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCEEEEEecCc-hhH-HHHHHHHHhcCCEEeecC
Q 009090 82 VYEEVLQIVSALRAS--GAEPGCRVGIYGANC-PQW-VEAMEACNALSLICVPLY 132 (544)
Q Consensus 82 l~~~~~~la~~L~~~--gl~~gd~V~l~~~n~-~~~-~~~~lA~~~~G~~~v~i~ 132 (544)
+..+..++|..|.+. .+++|+.|+|.++-. .++ -.+.-++..+|+.++.+.
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 61 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVV 61 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 456777888888875 689999999999854 333 334667888899877654
No 109
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=24.31 E-value=55 Score=30.06 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=22.7
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC
Q 009090 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 110 (544)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n 110 (544)
..+|-.+ |.+.|++.|+++||+|+|.+.-
T Consensus 20 ~~~T~~~-------L~~~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 20 ELVTRDR-------LASDLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CEECHHH-------HHHHHHHHTCCTTCEEEEEECS
T ss_pred CCcCHHH-------HHHHHHHcCCCCCCEEEEEech
Confidence 4577665 5567888999999999999763
No 110
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=24.10 E-value=1.8e+02 Score=23.98 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeec--CCCCChhHH
Q 009090 89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL--YDTLGPGAV 140 (544)
Q Consensus 89 la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i--~~~~~~~~l 140 (544)
.+.+|.+.|+.+...+.+...+..+.+.++-=|++.|...+.+ -+..+..+.
T Consensus 88 ~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~ 141 (161)
T 1oft_A 88 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAAR 141 (161)
T ss_dssp CHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHH
T ss_pred CHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHH
Confidence 4667888899887766666777788888888888988755444 244555443
No 111
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=23.76 E-value=57 Score=29.83 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEecCc
Q 009090 88 QIVSALRASGAEPGCRVGIYGANC 111 (544)
Q Consensus 88 ~la~~L~~~gl~~gd~V~l~~~n~ 111 (544)
.|.+.|++.|+++||+|+|.+.-+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 466778889999999999997643
No 112
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=23.34 E-value=1.7e+02 Score=27.56 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=41.2
Q ss_pred HHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCC-EEeecCCCCChhHHHHHHHhcCceEEEEc
Q 009090 92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL-ICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155 (544)
Q Consensus 92 ~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 155 (544)
.|...++++|++|+|...-.+-.+++.+|- ..|+ .++.++.. ++. ..++++.+++.++..
T Consensus 158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR--KHC-CDIALEYGATDIINY 218 (352)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC--HHH-HHHHHHHTCCEEECG
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC--HHH-HHHHHHhCCceEEcC
Confidence 355668999999999986556677666665 6787 55555442 333 356677888877653
No 113
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=22.96 E-value=1.7e+02 Score=27.73 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEc
Q 009090 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155 (544)
Q Consensus 91 ~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 155 (544)
+.|.+.++++|++|+|....++-.+++.+|- ..|+.++.+.. +++.+. +++..+++.++..
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~--~~~~~~-~a~~lGa~~vi~~ 245 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTT--SEAKRE-AAKALGADEVVNS 245 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--SGGGHH-HHHHHTCSEEEET
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEecc
Confidence 4455668999999999987666777777765 46887555543 234433 4456777776643
No 114
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=22.74 E-value=2.5e+02 Score=26.56 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHcCCC-CCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEcc
Q 009090 92 ALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 92 ~L~~~gl~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (544)
.|.+.+++ +|++|+|...-.+-.+++.+|- ..|+.++.+.. +++.+..+.+..+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 45566888 9999999987666777777765 56887655543 345565556678887766433
No 115
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=22.53 E-value=1.3e+02 Score=28.42 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=40.1
Q ss_pred CCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccch
Q 009090 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158 (544)
Q Consensus 100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~ 158 (544)
+.+.|+- ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++...
T Consensus 75 ~~~~vv~-~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 75 KPKAVVT-HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CCSCEEE-ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 4444433 344555566677888999877666565555666788899999999998654
No 116
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=22.48 E-value=2.5e+02 Score=26.22 Aligned_cols=7 Identities=0% Similarity=-0.301 Sum_probs=3.0
Q ss_pred CCCEEEE
Q 009090 100 PGCRVGI 106 (544)
Q Consensus 100 ~gd~V~l 106 (544)
+||.|++
T Consensus 88 ~gd~vl~ 94 (384)
T 1eg5_A 88 RKRTIIT 94 (384)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 4444443
No 117
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=21.26 E-value=3.2e+02 Score=25.81 Aligned_cols=57 Identities=9% Similarity=-0.040 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCC----CChhHHHHHHHhc--CceEEEEcc
Q 009090 97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT----LGPGAVNFILDHA--EIDFVFVQD 156 (544)
Q Consensus 97 gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~----~~~~~l~~~l~~~--~~~~vi~~~ 156 (544)
++++||.|++..+....... ++...|+.++.++.. ...+++...++.. ++++|++..
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred CCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 46788988887776555432 334478776665432 3567787777764 466665543
No 118
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=20.95 E-value=4.9e+02 Score=23.90 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHHc-CCCCCCEEEEEec-CchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEc
Q 009090 93 LRAS-GAEPGCRVGIYGA-NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155 (544)
Q Consensus 93 L~~~-gl~~gd~V~l~~~-n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 155 (544)
|.+. ++++|++|++... ..+-.+++.+|. ..|+.++.+.. +++++. +++..+++.++..
T Consensus 140 l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 140 TNEAYHVKKGDYVLLFAAAGGVGLILNQLLK-MKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred HHHhccCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 4343 8999999999984 556666666665 57887766654 345554 6677888877654
No 119
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.57 E-value=3.1e+02 Score=26.67 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=31.3
Q ss_pred EEEecCchhHHH-HHHHHHhcCCEEeecCCCCChh--HHHHHHHhcCceEEEEccchhhHh
Q 009090 105 GIYGANCPQWVE-AMEACNALSLICVPLYDTLGPG--AVNFILDHAEIDFVFVQDKKVKEL 162 (544)
Q Consensus 105 ~l~~~n~~~~~~-~~lA~~~~G~~~v~i~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~ 162 (544)
++++.++.+.+. ++.++...|-.++..++.+..- .+...++..+++++.++....+.+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l 160 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence 455556655443 3344555665555555555332 222356677777777765544444
No 120
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=20.37 E-value=1.5e+02 Score=26.54 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCC
Q 009090 47 IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98 (544)
Q Consensus 47 ~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl 98 (544)
+++...+..|+...+.+. |....++-..++.++.+.+.+.+..|.+.|+
T Consensus 15 v~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~ 63 (255)
T 2jfz_A 15 VLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI 63 (255)
T ss_dssp HHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 455666778988887766 6666666567999999999999999988765
No 121
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=20.31 E-value=2.5e+02 Score=26.40 Aligned_cols=59 Identities=20% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCC-EEeecCCCCChhHHHHHHHhcCceEEEEc
Q 009090 93 LRASGAEPGCRVGIYGANCPQWVEAMEACNALSL-ICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155 (544)
Q Consensus 93 L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 155 (544)
|...++++|++|+|...-++-.+++.+|- ..|+ .++.+.. +++. ..+++..+++.++..
T Consensus 164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~~ 223 (356)
T 1pl8_A 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDL--SATR-LSKAKEIGADLVLQI 223 (356)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSEEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHhCCCEEEcC
Confidence 44558999999999987556777777765 5688 5655543 2333 345667888776653
No 122
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=20.14 E-value=4.6e+02 Score=27.59 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=53.1
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch
Q 009090 33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP 112 (544)
Q Consensus 33 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~ 112 (544)
++.-.-.....+.++=+..|+.....-++... ++ |+.-+.. + + ..-+++||.|++--++..
T Consensus 186 ~ld~L~~~~g~i~eaE~~lA~~fGa~~a~~v~---nG--------ts~An~~-----a--i-~al~~pGD~VLv~r~~H~ 246 (715)
T 3n75_A 186 ELGSLLDHSGPHKEAEQYIARVFNADRSYMVT---NG--------TSTANKI-----V--G-MYSAPAGSTILIDRNCHK 246 (715)
T ss_dssp GGCBTTTTBTHHHHHHHHHHHHHTCSEEEEES---SH--------HHHHHHH-----H--H-HHHCCTTCEEEEESSCCH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhCCCCceEEC---cH--------HHHHHHH-----H--H-HHhCCCCCEEEECCCccH
Confidence 44444444555666666666665555454433 33 2222111 1 1 112689998877655544
Q ss_pred hHHHHHHHHHhcCCEEeecCCC---------C-----ChhHHHHHHHhc
Q 009090 113 QWVEAMEACNALSLICVPLYDT---------L-----GPGAVNFILDHA 147 (544)
Q Consensus 113 ~~~~~~lA~~~~G~~~v~i~~~---------~-----~~~~l~~~l~~~ 147 (544)
-.. -|+..+|+.++.+++. . +.+.+...|+..
T Consensus 247 S~~---~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~ 292 (715)
T 3n75_A 247 SLT---HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKET 292 (715)
T ss_dssp HHH---HHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHS
T ss_pred HHH---HHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhC
Confidence 333 3678899999888753 1 477888888764
No 123
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=20.11 E-value=1.9e+02 Score=27.30 Aligned_cols=78 Identities=12% Similarity=-0.050 Sum_probs=48.3
Q ss_pred eeHHHHHHHH--HHHH-HHHHHc-CCCCC-CEEEEEec-CchhHHHHHHHHHhcCCEEeecCCCCCh-hHHHHHHHhcCc
Q 009090 77 KTYKEVYEEV--LQIV-SALRAS-GAEPG-CRVGIYGA-NCPQWVEAMEACNALSLICVPLYDTLGP-GAVNFILDHAEI 149 (544)
Q Consensus 77 ~Ty~el~~~~--~~la-~~L~~~-gl~~g-d~V~l~~~-n~~~~~~~~lA~~~~G~~~v~i~~~~~~-~~l~~~l~~~~~ 149 (544)
+++.+..... -..| +.|.+. ++++| ++|+|... -.+-.+++.+|- ..|+.++.+...... ++....++..++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (364)
T 1gu7_A 139 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELGA 217 (364)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcCC
Confidence 6776643221 2223 334453 89999 99999987 567777777776 468866555332222 334455678888
Q ss_pred eEEEEc
Q 009090 150 DFVFVQ 155 (544)
Q Consensus 150 ~~vi~~ 155 (544)
+.++..
T Consensus 218 ~~vi~~ 223 (364)
T 1gu7_A 218 TQVITE 223 (364)
T ss_dssp SEEEEH
T ss_pred eEEEec
Confidence 887754
No 124
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=20.06 E-value=3.6e+02 Score=24.80 Aligned_cols=64 Identities=8% Similarity=-0.044 Sum_probs=42.0
Q ss_pred HHHcCC-CCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 93 LRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 93 L~~~gl-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
+.+.|. ++|+.|+-. ..+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344454 666655444 3444555566777789987666555444455667888999999998764
Done!