BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009093
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic
Subunit (Irx3) Of Cellulose Synthase
Length = 93
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 61/76 (80%)
Query: 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61
Query: 63 PQCKTRYKKHKGSPAI 78
PQCKTRYK+ +GSP +
Sbjct: 62 PQCKTRYKRLRGSPRV 77
>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
Length = 52
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69
C +C + + +D F C C + +CR C+ R D N CP C+ Y
Sbjct: 3 CPLCMEPL--EIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPY 49
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 8 GVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67
G ++ G C IC D + V + C C C K+ N +CP C+
Sbjct: 1 GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRK 59
Query: 68 RYKKHKGSP 76
+ + P
Sbjct: 60 KINHKRYHP 68
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSP 76
C IC D + V + C C C K+ N +CP C+ + + P
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHP 61
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGS 75
G C IC D + V + C C C K+ N +CP C+ + +
Sbjct: 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYH 64
Query: 76 P 76
P
Sbjct: 65 P 65
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGS 75
G C IC D + V + C C C K+ N +CP C+ + +
Sbjct: 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYH 129
Query: 76 P 76
P
Sbjct: 130 P 130
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68
G C IC D + V + C C C K+ N +CP C+ +
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKK 65
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCY 51
VC IC D G++ + N + CD+C V + CY
Sbjct: 18 VCSICMD--GESQNSNVILFCDMCNLAVHQECY 48
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCY 51
VC IC D G++ + N + CD+C V + CY
Sbjct: 27 VCSICMD--GESQNSNVILFCDMCNLAVHQECY 57
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 27 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|3F8U|B Chain B, TapasinERP57 HETERODIMER
pdb|3F8U|D Chain D, TapasinERP57 HETERODIMER
Length = 401
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 359 DPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKK 418
+P +EP L+T TV+ + P +V + D L+F + TSE A P
Sbjct: 144 EPQQEPVLITMATVVLTVLTHTPAPRVR--LGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
Query: 419 YNIE 422
+ +E
Sbjct: 202 FGLE 205
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 204 WKERVDG-----------WKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252
W R+DG W + E V P GGGD+ A+ + LV D +
Sbjct: 59 WAPRIDGIAASTGIESRGWMLPLEAAVAP---------GGGGDLGAAREALVRDGFTEQD 109
Query: 253 ARQPLSRKVPIPSSR 267
A + ++ +P+S+
Sbjct: 110 ANRAIAALKAVPASQ 124
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 25 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 335 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 339 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 335 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 28 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With
C- Terminal Loop Replaced By Corresponding Loop From
Wstf
Length = 61
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE---YERKDGNQSCPQC 65
+ C++C D G + CD C C YE DG CP+C
Sbjct: 10 EFCRVCKD-------GGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRC 53
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 333 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70
Q+C+IC +N K V P C +C C ++ Q CP C+ K
Sbjct: 333 QLCKICAEN-DKDVKIEP------CGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,967,417
Number of Sequences: 62578
Number of extensions: 717215
Number of successful extensions: 1669
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1663
Number of HSP's gapped (non-prelim): 25
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)