Query 009093
Match_columns 544
No_of_seqs 305 out of 629
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 20:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02638 cellulose synthase A 100.0 7E-188 2E-192 1566.6 40.9 543 1-544 1-544 (1079)
2 PLN02400 cellulose synthase 100.0 3E-185 6E-190 1546.0 39.0 521 5-544 24-551 (1085)
3 PLN02436 cellulose synthase A 100.0 1E-181 3E-186 1512.9 41.7 529 6-544 25-560 (1094)
4 PLN02915 cellulose synthase A 100.0 4E-170 1E-174 1419.8 38.5 472 13-544 11-482 (1044)
5 PLN02189 cellulose synthase 100.0 1E-168 2E-173 1408.6 37.1 497 6-544 23-526 (1040)
6 PLN02195 cellulose synthase A 100.0 2E-157 4E-162 1312.4 34.7 445 14-544 3-447 (977)
7 PLN02248 cellulose synthase-li 100.0 1E-128 3E-133 1088.1 34.2 438 9-544 116-613 (1135)
8 PLN02190 cellulose synthase-li 100.0 2.7E-95 6E-100 799.2 25.5 272 253-544 7-280 (756)
9 PLN02893 Cellulose synthase-li 100.0 3.5E-94 7.6E-99 792.1 24.8 277 252-544 9-292 (734)
10 PF03552 Cellulose_synt: Cellu 100.0 1.5E-82 3.2E-87 696.8 16.0 194 351-544 1-194 (720)
11 PF14569 zf-UDP: Zinc-binding 100.0 6.7E-47 1.4E-51 315.0 4.4 80 9-89 1-80 (80)
12 TIGR03030 CelA cellulose synth 99.7 4.7E-17 1E-21 182.0 12.9 140 272-422 57-205 (713)
13 PRK11498 bcsA cellulose syntha 99.6 5.3E-16 1.1E-20 176.6 12.0 113 274-397 189-305 (852)
14 PF14570 zf-RING_4: RING/Ubox 99.2 1.7E-11 3.7E-16 95.1 3.0 48 20-70 1-48 (48)
15 PRK05454 glucosyltransferase M 98.3 4.3E-06 9.3E-11 94.8 12.7 137 270-420 40-189 (691)
16 COG1215 Glycosyltransferases, 98.3 2.2E-06 4.8E-11 88.4 8.4 54 348-406 53-106 (439)
17 TIGR03111 glyc2_xrt_Gpos1 puta 98.1 8.9E-06 1.9E-10 86.7 9.5 58 345-406 45-102 (439)
18 PRK14583 hmsR N-glycosyltransf 97.7 9.5E-05 2.1E-09 78.8 8.6 53 347-405 73-125 (444)
19 COG5175 MOT2 Transcriptional r 97.6 2.5E-05 5.4E-10 81.9 1.8 49 19-70 16-64 (480)
20 cd06421 CESA_CelA_like CESA_Ce 97.3 0.00042 9.2E-09 64.8 5.9 51 349-402 1-51 (234)
21 TIGR03469 HonB hopene-associat 97.1 0.0016 3.4E-08 68.4 8.5 55 345-404 36-90 (384)
22 PRK11204 N-glycosyltransferase 97.0 0.0023 5E-08 67.0 8.7 53 346-404 51-103 (420)
23 cd04190 Chitin_synth_C C-termi 96.9 0.00051 1.1E-08 67.0 2.6 41 353-396 1-49 (244)
24 cd04191 Glucan_BSP_ModH Glucan 96.9 0.0021 4.5E-08 64.6 6.9 42 351-396 1-46 (254)
25 cd06427 CESA_like_2 CESA_like_ 96.9 0.0015 3.2E-08 62.9 5.2 52 349-404 1-52 (241)
26 TIGR03472 HpnI hopanoid biosyn 96.7 0.0064 1.4E-07 63.5 8.9 52 347-404 39-90 (373)
27 TIGR00570 cdk7 CDK-activating 96.6 0.0027 5.9E-08 66.4 4.9 62 16-79 2-63 (309)
28 cd06437 CESA_CaSu_A2 Cellulose 96.4 0.0056 1.2E-07 58.2 5.8 52 349-405 1-52 (232)
29 cd06439 CESA_like_1 CESA_like_ 96.4 0.0068 1.5E-07 57.9 6.1 57 344-404 24-80 (251)
30 cd06438 EpsO_like EpsO protein 96.2 0.0059 1.3E-07 56.2 4.4 45 353-401 1-45 (183)
31 cd04192 GT_2_like_e Subfamily 96.1 0.0086 1.9E-07 55.6 5.1 47 353-403 1-47 (229)
32 PRK14716 bacteriophage N4 adso 96.0 0.019 4.1E-07 63.6 8.0 54 347-406 64-118 (504)
33 PF14446 Prok-RING_1: Prokaryo 95.9 0.0058 1.3E-07 49.1 2.7 47 16-70 4-52 (54)
34 PF13641 Glyco_tranf_2_3: Glyc 95.9 0.0032 7E-08 59.1 1.1 49 349-403 1-49 (228)
35 cd04196 GT_2_like_d Subfamily 95.8 0.015 3.3E-07 53.4 5.2 47 352-404 1-47 (214)
36 cd02520 Glucosylceramide_synth 95.4 0.028 6.1E-07 52.4 5.5 50 349-404 1-50 (196)
37 cd06435 CESA_NdvC_like NdvC_li 95.3 0.036 7.8E-07 52.5 5.9 42 353-399 2-43 (236)
38 PRK11234 nfrB bacteriophage N4 95.2 0.083 1.8E-06 61.1 9.5 54 345-404 59-113 (727)
39 cd06434 GT2_HAS Hyaluronan syn 95.1 0.028 6.1E-07 52.9 4.5 47 350-403 1-47 (235)
40 cd04184 GT2_RfbC_Mx_like Myxoc 95.1 0.043 9.2E-07 50.3 5.6 51 349-404 1-51 (202)
41 COG0463 WcaA Glycosyltransfera 94.7 0.054 1.2E-06 45.3 4.8 52 348-405 2-53 (291)
42 cd02525 Succinoglycan_BP_ExoA 94.6 0.063 1.4E-06 50.5 5.5 50 351-404 2-51 (249)
43 PTZ00260 dolichyl-phosphate be 94.5 0.14 2.9E-06 53.5 8.3 56 345-404 66-127 (333)
44 cd06433 GT_2_WfgS_like WfgS an 93.7 0.12 2.5E-06 46.5 5.1 46 353-404 2-47 (202)
45 cd04186 GT_2_like_c Subfamily 93.3 0.13 2.9E-06 44.8 4.7 46 353-404 1-46 (166)
46 cd06423 CESA_like CESA_like is 93.3 0.12 2.6E-06 44.3 4.3 46 353-404 1-46 (180)
47 PRK15489 nfrB bacteriophage N4 93.2 0.18 3.9E-06 58.2 6.8 50 346-401 68-121 (703)
48 cd00162 RING RING-finger (Real 92.8 0.13 2.7E-06 36.4 3.2 44 19-68 1-44 (45)
49 PF00535 Glycos_transf_2: Glyc 92.8 0.12 2.5E-06 44.6 3.6 49 352-406 1-49 (169)
50 cd02522 GT_2_like_a GT_2_like_ 92.2 0.19 4.2E-06 46.7 4.5 48 351-404 1-48 (221)
51 PRK10018 putative glycosyl tra 92.0 0.3 6.5E-06 49.9 5.9 43 347-395 3-45 (279)
52 PLN02726 dolichyl-phosphate be 91.7 0.35 7.6E-06 46.9 5.8 55 346-404 6-60 (243)
53 cd04185 GT_2_like_b Subfamily 91.7 0.22 4.8E-06 46.0 4.2 46 353-404 1-46 (202)
54 cd04195 GT2_AmsE_like GT2_AmsE 91.7 0.34 7.4E-06 44.5 5.4 40 353-397 2-42 (201)
55 PF05290 Baculo_IE-1: Baculovi 91.5 0.13 2.7E-06 48.5 2.4 51 18-72 81-134 (140)
56 cd02510 pp-GalNAc-T pp-GalNAc- 90.8 0.36 7.8E-06 48.3 5.0 49 353-404 2-50 (299)
57 cd06913 beta3GnTL1_like Beta 1 90.6 0.36 7.8E-06 45.5 4.5 47 353-404 1-47 (219)
58 cd06436 GlcNAc-1-P_transferase 90.4 0.31 6.7E-06 45.6 4.0 44 353-403 1-44 (191)
59 PRK10073 putative glycosyl tra 90.3 0.54 1.2E-05 48.8 6.0 51 348-404 5-55 (328)
60 cd04179 DPM_DPG-synthase_like 90.0 0.45 9.8E-06 42.9 4.5 48 353-404 1-48 (185)
61 cd06420 GT2_Chondriotin_Pol_N 89.5 0.64 1.4E-05 41.9 5.1 46 353-404 1-46 (182)
62 KOG2068 MOT2 transcription fac 88.7 0.35 7.5E-06 51.3 3.1 52 17-72 249-300 (327)
63 smart00504 Ubox Modified RING 87.5 0.7 1.5E-05 36.1 3.5 44 19-70 3-46 (63)
64 PRK10063 putative glycosyl tra 87.3 0.88 1.9E-05 45.3 4.9 52 349-404 1-53 (248)
65 PHA02929 N1R/p28-like protein; 86.8 0.88 1.9E-05 46.4 4.6 55 15-70 172-227 (238)
66 cd00761 Glyco_tranf_GTA_type G 86.4 1.4 3.1E-05 36.7 4.9 48 353-406 1-48 (156)
67 cd06442 DPM1_like DPM1_like re 86.3 0.99 2.2E-05 42.1 4.4 45 353-402 1-45 (224)
68 PRK13915 putative glucosyl-3-p 85.4 1.3 2.8E-05 45.9 5.1 54 347-404 29-82 (306)
69 KOG3800 Predicted E3 ubiquitin 84.8 0.76 1.6E-05 48.2 3.1 53 18-72 1-53 (300)
70 PF13639 zf-RING_2: Ring finge 84.0 0.73 1.6E-05 34.2 1.9 43 19-66 2-44 (44)
71 cd04188 DPG_synthase DPG_synth 83.6 1.2 2.6E-05 41.7 3.7 48 353-404 1-50 (211)
72 PLN03208 E3 ubiquitin-protein 82.3 2.2 4.7E-05 42.5 4.9 63 1-70 1-79 (193)
73 smart00659 RPOLCX RNA polymera 79.8 1.2 2.5E-05 34.4 1.7 27 18-46 3-29 (44)
74 PHA02862 5L protein; Provision 78.9 1.5 3.3E-05 42.1 2.5 48 17-70 2-53 (156)
75 PF03604 DNA_RNApol_7kD: DNA d 78.6 1.5 3.2E-05 31.9 1.8 26 19-46 2-27 (32)
76 KOG0823 Predicted E3 ubiquitin 78.5 1.4 3E-05 44.9 2.2 45 18-70 48-95 (230)
77 PF14447 Prok-RING_4: Prokaryo 78.3 0.99 2.1E-05 36.7 0.9 46 17-72 7-52 (55)
78 cd04187 DPM1_like_bac Bacteria 78.1 3.6 7.7E-05 37.4 4.6 48 353-404 1-49 (181)
79 smart00184 RING Ring finger. E 77.7 2.9 6.3E-05 28.2 3.1 39 20-65 1-39 (39)
80 PRK14559 putative protein seri 77.1 1.2 2.7E-05 51.2 1.6 46 19-70 3-52 (645)
81 PF03966 Trm112p: Trm112p-like 76.7 0.54 1.2E-05 38.6 -1.0 25 48-72 42-66 (68)
82 KOG0006 E3 ubiquitin-protein l 74.6 2.6 5.7E-05 45.0 3.1 64 12-76 310-414 (446)
83 KOG2068 MOT2 transcription fac 74.6 1.3 2.8E-05 47.2 0.9 30 43-72 1-32 (327)
84 PF02318 FYVE_2: FYVE-type zin 74.5 0.57 1.2E-05 42.3 -1.5 48 15-65 52-100 (118)
85 PF14471 DUF4428: Domain of un 74.1 2.2 4.8E-05 33.8 1.9 28 19-52 1-28 (51)
86 PF13923 zf-C3HC4_2: Zinc fing 71.4 4.1 8.9E-05 29.6 2.6 39 20-65 1-39 (39)
87 PF13920 zf-C3HC4_3: Zinc fing 70.7 4.7 0.0001 30.8 2.9 45 19-71 4-49 (50)
88 PRK00420 hypothetical protein; 70.4 1.9 4.2E-05 39.4 0.9 28 37-70 24-51 (112)
89 smart00249 PHD PHD zinc finger 70.3 3.2 6.9E-05 29.7 1.9 43 19-65 1-47 (47)
90 PF00097 zf-C3HC4: Zinc finger 69.7 3.7 8.1E-05 29.7 2.1 40 20-65 1-41 (41)
91 PRK10714 undecaprenyl phosphat 69.1 8.5 0.00018 40.1 5.4 54 348-406 5-60 (325)
92 COG5114 Histone acetyltransfer 67.2 1.9 4E-05 46.1 0.1 36 19-58 7-43 (432)
93 PHA02825 LAP/PHD finger-like p 66.8 6.6 0.00014 38.2 3.7 51 16-72 7-61 (162)
94 KOG2932 E3 ubiquitin ligase in 65.8 4.1 9E-05 43.4 2.3 43 30-72 84-136 (389)
95 cd02511 Beta4Glucosyltransfera 65.5 9.1 0.0002 37.0 4.5 42 351-401 2-43 (229)
96 PRK07220 DNA topoisomerase I; 64.8 3.6 7.7E-05 48.0 1.8 48 18-67 590-643 (740)
97 PF04641 Rtf2: Rtf2 RING-finge 63.1 6.7 0.00015 40.0 3.2 48 17-70 113-161 (260)
98 PF07282 OrfB_Zn_ribbon: Putat 62.8 5.9 0.00013 32.0 2.2 33 16-49 27-59 (69)
99 PRK00398 rpoP DNA-directed RNA 62.5 5.1 0.00011 30.5 1.7 28 18-46 4-31 (46)
100 PHA02926 zinc finger-like prot 62.4 9.7 0.00021 39.1 4.1 61 15-75 168-235 (242)
101 cd02514 GT13_GLCNAC-TI GT13_GL 61.9 14 0.0003 39.6 5.3 41 353-397 4-44 (334)
102 PRK15103 paraquat-inducible me 61.5 6.9 0.00015 42.8 3.1 30 34-72 219-248 (419)
103 PRK04023 DNA polymerase II lar 61.1 6.1 0.00013 47.7 2.7 46 15-70 624-674 (1121)
104 COG0551 TopA Zn-finger domain 60.9 6 0.00013 36.4 2.2 50 14-67 14-68 (140)
105 TIGR00155 pqiA_fam integral me 59.8 5.9 0.00013 43.2 2.2 30 35-72 214-243 (403)
106 PF14634 zf-RING_5: zinc-RING 59.8 11 0.00024 28.2 3.1 43 20-67 2-44 (44)
107 cd02249 ZZ Zinc finger, ZZ typ 58.7 9 0.00019 29.2 2.5 30 19-53 2-32 (46)
108 COG2943 MdoH Membrane glycosyl 57.7 2.5E+02 0.0054 32.8 14.2 68 348-424 143-213 (736)
109 smart00291 ZnF_ZZ Zinc-binding 56.5 12 0.00025 28.4 2.8 33 17-54 4-37 (44)
110 cd02335 ZZ_ADA2 Zinc finger, Z 55.3 11 0.00024 29.2 2.5 30 19-52 2-32 (49)
111 PRK14973 DNA topoisomerase I; 54.5 9 0.00019 46.1 2.8 48 18-68 589-644 (936)
112 cd00350 rubredoxin_like Rubred 54.4 4.7 0.0001 29.0 0.3 18 53-70 11-28 (33)
113 TIGR00599 rad18 DNA repair pro 54.2 10 0.00022 41.5 2.9 51 12-70 20-71 (397)
114 KOG0457 Histone acetyltransfer 54.1 5.5 0.00012 43.9 0.9 49 18-73 15-64 (438)
115 PF09484 Cas_TM1802: CRISPR-as 53.6 7.1 0.00015 44.1 1.7 44 14-58 195-254 (593)
116 PRK11827 hypothetical protein; 53.6 9.3 0.0002 31.6 1.9 19 59-77 26-44 (60)
117 KOG2824 Glutaredoxin-related p 53.3 8.3 0.00018 40.5 1.9 40 14-65 226-279 (281)
118 PF00628 PHD: PHD-finger; Int 52.7 11 0.00024 28.5 2.1 44 19-66 1-49 (51)
119 PF06906 DUF1272: Protein of u 52.4 18 0.00038 29.9 3.2 47 18-70 6-52 (57)
120 cd02526 GT2_RfbF_like RfbF is 52.3 18 0.00039 34.1 4.0 38 353-398 1-38 (237)
121 PF07649 C1_3: C1-like domain; 52.1 9.4 0.0002 26.6 1.5 28 19-50 2-29 (30)
122 PRK03982 heat shock protein Ht 51.6 63 0.0014 33.3 8.0 69 311-392 47-115 (288)
123 PRK07219 DNA topoisomerase I; 51.2 9 0.0002 45.2 2.1 53 17-72 688-746 (822)
124 TIGR02443 conserved hypothetic 51.1 10 0.00022 31.4 1.8 31 15-45 7-40 (59)
125 KOG0311 Predicted E3 ubiquitin 49.7 2.1 4.7E-05 46.1 -3.0 49 15-69 40-89 (381)
126 KOG2177 Predicted E3 ubiquitin 48.6 9.5 0.00021 36.0 1.4 43 16-66 12-54 (386)
127 PRK11595 DNA utilization prote 47.0 14 0.00031 36.7 2.4 39 17-68 5-43 (227)
128 COG4739 Uncharacterized protei 46.3 10 0.00022 36.8 1.3 45 26-70 77-121 (182)
129 PF14354 Lar_restr_allev: Rest 45.8 14 0.0003 29.2 1.7 26 19-44 5-37 (61)
130 TIGR01206 lysW lysine biosynth 45.2 16 0.00035 29.5 2.0 14 18-31 3-16 (54)
131 PRK12495 hypothetical protein; 45.0 9.9 0.00022 38.8 1.0 30 35-71 41-70 (226)
132 PF08274 PhnA_Zn_Ribbon: PhnA 44.9 8.9 0.00019 27.6 0.5 25 18-44 3-27 (30)
133 COG2888 Predicted Zn-ribbon RN 44.4 21 0.00047 29.7 2.6 48 17-66 9-57 (61)
134 COG1996 RPC10 DNA-directed RNA 44.2 11 0.00024 30.0 1.0 29 17-46 6-34 (49)
135 PF12773 DZR: Double zinc ribb 42.3 19 0.0004 27.4 1.9 12 17-28 12-23 (50)
136 PF00643 zf-B_box: B-box zinc 42.1 18 0.00038 26.5 1.7 30 17-53 3-32 (42)
137 PF09623 Cas_NE0113: CRISPR-as 41.9 1.8E+02 0.0039 29.7 9.3 60 353-421 4-63 (224)
138 cd00065 FYVE FYVE domain; Zinc 41.4 14 0.0003 28.6 1.1 38 17-57 2-39 (57)
139 cd02336 ZZ_RSC8 Zinc finger, Z 40.6 24 0.00053 27.4 2.3 29 19-52 2-31 (45)
140 TIGR00595 priA primosomal prot 40.5 14 0.0003 41.3 1.3 46 32-77 208-258 (505)
141 PRK06319 DNA topoisomerase I/S 40.4 18 0.00039 43.1 2.3 56 16-74 591-660 (860)
142 TIGR02556 cas_TM1802 CRISPR-as 39.5 19 0.00041 41.1 2.2 41 17-58 170-222 (555)
143 PRK12380 hydrogenase nickel in 39.4 11 0.00023 34.2 0.2 26 36-68 70-95 (113)
144 PRK14873 primosome assembly pr 39.3 22 0.00047 41.4 2.7 11 59-69 422-432 (665)
145 PRK08359 transcription factor; 39.1 11 0.00023 37.1 0.2 30 18-55 7-42 (176)
146 COG0551 TopA Zn-finger domain 38.7 13 0.00029 34.2 0.7 51 16-70 59-112 (140)
147 PF14446 Prok-RING_1: Prokaryo 37.5 10 0.00022 30.8 -0.1 17 56-72 18-34 (54)
148 PF11238 DUF3039: Protein of u 37.5 9.8 0.00021 31.4 -0.3 13 59-71 44-56 (58)
149 smart00744 RINGv The RING-vari 37.4 47 0.001 25.9 3.5 45 19-66 1-49 (49)
150 PF09526 DUF2387: Probable met 37.4 22 0.00048 30.2 1.8 31 15-45 6-39 (71)
151 PRK06393 rpoE DNA-directed RNA 37.3 16 0.00034 30.7 0.9 23 35-68 4-26 (64)
152 PRK14714 DNA polymerase II lar 36.7 19 0.00041 44.7 1.7 46 18-70 668-720 (1337)
153 KOG3507 DNA-directed RNA polym 36.5 20 0.00042 29.9 1.3 28 17-46 20-47 (62)
154 PF13240 zinc_ribbon_2: zinc-r 36.4 9.6 0.00021 25.7 -0.4 12 56-67 10-21 (23)
155 KOG1941 Acetylcholine receptor 36.2 11 0.00025 41.4 -0.1 62 17-81 365-432 (518)
156 PF13248 zf-ribbon_3: zinc-rib 36.0 10 0.00022 25.9 -0.4 15 54-68 11-25 (26)
157 PF03142 Chitin_synth_2: Chiti 35.8 53 0.0012 37.4 5.0 53 347-402 23-81 (527)
158 TIGR00155 pqiA_fam integral me 35.8 27 0.0006 38.1 2.7 35 35-73 12-47 (403)
159 TIGR01562 FdhE formate dehydro 35.5 34 0.00074 36.3 3.2 44 16-68 183-233 (305)
160 PTZ00293 thymidine kinase; Pro 35.4 17 0.00037 36.6 0.9 35 18-52 138-177 (211)
161 cd04191 Glucan_BSP_ModH Glucan 35.4 18 0.00039 36.6 1.1 25 515-543 66-90 (254)
162 PRK07726 DNA topoisomerase III 35.1 26 0.00057 40.4 2.5 46 17-67 610-657 (658)
163 KOG0320 Predicted E3 ubiquitin 35.0 33 0.00072 34.2 2.8 47 16-68 130-176 (187)
164 PRK14890 putative Zn-ribbon RN 34.9 53 0.0011 27.3 3.5 50 16-67 6-56 (59)
165 COG1326 Uncharacterized archae 34.9 21 0.00045 35.9 1.4 26 19-44 8-38 (201)
166 PF10571 UPF0547: Uncharacteri 34.5 15 0.00033 25.5 0.3 23 47-70 3-25 (26)
167 PF03833 PolC_DP2: DNA polymer 34.5 13 0.00028 44.3 0.0 43 18-70 656-703 (900)
168 KOG3623 Homeobox transcription 34.4 20 0.00044 42.2 1.5 47 23-75 266-324 (1007)
169 KOG2977 Glycosyltransferase [G 34.3 88 0.0019 33.6 5.9 59 350-422 68-132 (323)
170 PRK05582 DNA topoisomerase I; 34.3 26 0.00055 40.4 2.2 51 17-71 571-623 (650)
171 PRK00564 hypA hydrogenase nick 34.0 15 0.00033 33.4 0.3 29 36-71 71-100 (117)
172 PRK10220 hypothetical protein; 33.8 33 0.00071 31.7 2.4 25 45-70 7-31 (111)
173 PRK03564 formate dehydrogenase 33.4 40 0.00087 35.9 3.3 29 16-44 186-220 (309)
174 PF03107 C1_2: C1 domain; Int 33.3 31 0.00067 24.2 1.7 28 19-50 2-29 (30)
175 COG0068 HypF Hydrogenase matur 33.3 29 0.00063 40.8 2.5 62 15-76 99-192 (750)
176 PF07754 DUF1610: Domain of un 32.8 38 0.00083 23.4 2.0 24 20-44 1-24 (24)
177 COG3813 Uncharacterized protei 32.7 42 0.00091 29.2 2.7 48 19-72 7-54 (84)
178 TIGR00686 phnA alkylphosphonat 32.3 31 0.00066 31.8 2.0 25 45-70 6-30 (109)
179 KOG0317 Predicted E3 ubiquitin 32.1 31 0.00067 36.5 2.2 48 15-70 237-284 (293)
180 KOG1039 Predicted E3 ubiquitin 31.9 18 0.0004 39.0 0.6 60 15-75 159-226 (344)
181 PF13719 zinc_ribbon_5: zinc-r 31.5 21 0.00045 26.3 0.6 10 61-70 4-13 (37)
182 TIGR03830 CxxCG_CxxCG_HTH puta 31.4 20 0.00044 31.6 0.7 41 20-70 1-42 (127)
183 TIGR00100 hypA hydrogenase nic 31.2 18 0.00038 32.9 0.2 27 37-70 71-97 (115)
184 PRK15103 paraquat-inducible me 31.0 23 0.00051 38.8 1.2 33 37-73 11-44 (419)
185 PRK07219 DNA topoisomerase I; 31.0 29 0.00063 41.2 2.0 50 18-69 603-658 (822)
186 PF13717 zinc_ribbon_4: zinc-r 30.4 22 0.00048 26.2 0.6 10 61-70 4-13 (36)
187 PF09862 DUF2089: Protein of u 29.5 25 0.00055 32.4 1.0 18 20-42 1-18 (113)
188 TIGR00143 hypF [NiFe] hydrogen 29.4 26 0.00056 41.0 1.3 56 15-71 66-152 (711)
189 smart00661 RPOL9 RNA polymeras 29.4 54 0.0012 24.9 2.7 26 19-44 2-28 (52)
190 KOG2051 Nonsense-mediated mRNA 29.4 55 0.0012 40.1 3.9 55 446-537 1067-1122(1128)
191 PF11781 RRN7: RNA polymerase 29.1 33 0.00071 25.5 1.3 27 16-44 5-33 (36)
192 PRK03681 hypA hydrogenase nick 28.8 17 0.00037 32.9 -0.2 27 37-70 71-98 (114)
193 PF01396 zf-C4_Topoisom: Topoi 28.7 47 0.001 24.8 2.1 28 18-48 2-31 (39)
194 PRK05580 primosome assembly pr 28.5 26 0.00057 40.5 1.1 49 29-77 373-426 (679)
195 PRK03824 hypA hydrogenase nick 28.2 23 0.00051 33.0 0.5 11 58-68 106-116 (135)
196 COG1592 Rubrerythrin [Energy p 28.0 29 0.00063 33.9 1.2 31 32-71 131-161 (166)
197 COG1216 Predicted glycosyltran 27.8 97 0.0021 31.6 4.9 51 349-405 3-53 (305)
198 COG5236 Uncharacterized conser 27.7 39 0.00085 36.9 2.1 50 16-72 60-110 (493)
199 PF14803 Nudix_N_2: Nudix N-te 27.4 32 0.00069 25.4 1.0 26 19-44 2-30 (34)
200 PF13901 DUF4206: Domain of un 27.2 58 0.0013 32.2 3.1 49 14-68 149-198 (202)
201 TIGR03030 CelA cellulose synth 27.1 52 0.0011 38.3 3.1 23 517-543 203-225 (713)
202 COG1645 Uncharacterized Zn-fin 26.9 28 0.00061 32.9 0.8 27 37-70 29-55 (131)
203 COG4391 Uncharacterized protei 26.9 26 0.00056 29.3 0.5 16 55-70 44-59 (62)
204 cd02337 ZZ_CBP Zinc finger, ZZ 26.8 42 0.00091 25.5 1.6 28 19-52 2-30 (41)
205 COG1198 PriA Primosomal protei 26.6 34 0.00073 40.4 1.5 44 20-75 438-491 (730)
206 PF06397 Desulfoferrod_N: Desu 26.4 20 0.00042 27.0 -0.2 22 18-39 7-28 (36)
207 PF04981 NMD3: NMD3 family ; 26.3 39 0.00085 33.9 1.8 43 20-76 1-50 (236)
208 TIGR02302 aProt_lowcomp conser 25.7 1.3E+02 0.0029 36.3 6.1 39 298-337 45-83 (851)
209 KOG4215 Hepatocyte nuclear fac 25.6 30 0.00064 38.0 0.8 26 17-44 19-45 (432)
210 PHA02565 49 recombination endo 25.6 55 0.0012 31.9 2.5 29 14-42 17-45 (157)
211 KOG1609 Protein involved in mR 25.6 42 0.00091 33.9 1.8 58 17-75 78-139 (323)
212 PRK06599 DNA topoisomerase I; 25.5 48 0.001 38.4 2.5 23 17-40 585-610 (675)
213 KOG1734 Predicted RING-contain 24.8 29 0.00063 36.7 0.5 55 9-70 216-281 (328)
214 PF10367 Vps39_2: Vacuolar sor 24.5 48 0.001 28.1 1.8 33 14-51 75-107 (109)
215 cd02339 ZZ_Mind_bomb Zinc fing 24.3 63 0.0014 25.0 2.2 30 19-52 2-32 (45)
216 PF11261 IRF-2BP1_2: Interfero 24.3 19 0.00041 29.2 -0.7 21 35-55 15-35 (54)
217 PF07295 DUF1451: Protein of u 24.3 37 0.00079 32.5 1.1 29 14-43 109-137 (146)
218 PF04564 U-box: U-box domain; 24.2 76 0.0017 26.2 2.8 45 19-70 6-50 (73)
219 PF08772 NOB1_Zn_bind: Nin one 24.1 21 0.00046 30.5 -0.5 23 46-68 11-33 (73)
220 KOG4317 Predicted Zn-finger pr 23.7 38 0.00083 36.5 1.2 26 19-51 9-35 (383)
221 TIGR02098 MJ0042_CXXC MJ0042 f 23.1 36 0.00078 24.6 0.6 11 61-71 4-14 (38)
222 PF11712 Vma12: Endoplasmic re 22.8 1.7E+02 0.0038 27.2 5.2 18 201-218 21-38 (142)
223 PF01155 HypA: Hydrogenase exp 22.7 21 0.00046 32.2 -0.8 30 36-72 70-99 (113)
224 PRK05580 primosome assembly pr 22.6 29 0.00063 40.2 0.1 11 59-69 421-431 (679)
225 PF15632 ATPgrasp_Ter: ATP-gra 22.6 1.6E+02 0.0035 31.6 5.5 55 350-421 66-120 (329)
226 smart00064 FYVE Protein presen 22.6 79 0.0017 25.3 2.6 38 16-56 9-46 (68)
227 PF08271 TF_Zn_Ribbon: TFIIB z 22.5 49 0.0011 24.8 1.2 8 19-26 2-9 (43)
228 PF09723 Zn-ribbon_8: Zinc rib 22.4 33 0.00072 25.9 0.3 10 58-67 25-34 (42)
229 PF05142 DUF702: Domain of unk 22.4 41 0.00089 32.7 1.0 39 15-71 2-40 (154)
230 PRK08351 DNA-directed RNA poly 22.3 46 0.001 27.7 1.2 19 38-67 5-23 (61)
231 KOG2857 Predicted MYND Zn-fing 22.3 45 0.00097 32.3 1.2 39 18-68 6-45 (157)
232 PF13779 DUF4175: Domain of un 22.3 2.1E+02 0.0045 34.5 6.9 61 270-336 7-69 (820)
233 COG4416 Com Mu-like prophage p 22.0 56 0.0012 27.0 1.5 23 47-69 7-34 (60)
234 TIGR00270 conserved hypothetic 22.0 32 0.00069 33.0 0.2 28 19-54 2-34 (154)
235 PF03884 DUF329: Domain of unk 21.9 61 0.0013 26.6 1.8 27 56-82 15-47 (57)
236 KOG2041 WD40 repeat protein [G 21.9 30 0.00065 41.0 -0.0 50 18-72 1118-1169(1189)
237 PF04216 FdhE: Protein involve 21.9 35 0.00077 35.2 0.5 28 17-44 172-205 (290)
238 PF02411 MerT: MerT mercuric t 21.8 2.7E+02 0.0059 25.7 6.1 53 268-320 47-115 (116)
239 smart00653 eIF2B_5 domain pres 21.7 46 0.00099 30.4 1.1 26 19-44 82-109 (110)
240 PRK00420 hypothetical protein; 21.5 74 0.0016 29.3 2.4 28 16-45 22-49 (112)
241 PRK05654 acetyl-CoA carboxylas 21.4 69 0.0015 33.8 2.5 33 35-71 26-58 (292)
242 PF13824 zf-Mss51: Zinc-finger 21.3 62 0.0013 26.5 1.7 13 58-70 13-25 (55)
243 PRK03001 M48 family peptidase; 21.3 3.1E+02 0.0067 28.3 7.1 40 316-357 52-91 (283)
244 KOG4289 Cadherin EGF LAG seven 21.3 35 0.00075 43.3 0.3 32 43-75 1766-1804(2531)
245 COG1435 Tdk Thymidine kinase [ 21.2 33 0.00071 34.6 0.1 39 18-56 145-194 (201)
246 PF13597 NRDD: Anaerobic ribon 21.2 38 0.00082 38.4 0.6 31 35-75 490-524 (546)
247 COG0675 Transposase and inacti 21.2 38 0.00083 33.7 0.6 15 57-71 320-334 (364)
248 PF08861 DUF1828: Domain of un 21.1 74 0.0016 27.3 2.2 40 386-425 21-64 (90)
249 COG5220 TFB3 Cdk activating ki 21.0 31 0.00067 36.0 -0.1 55 18-73 11-67 (314)
250 KOG1785 Tyrosine kinase negati 20.7 41 0.00089 37.4 0.7 53 17-79 369-422 (563)
251 PRK09263 anaerobic ribonucleos 20.6 55 0.0012 38.5 1.7 36 35-75 640-682 (711)
252 smart00714 LITAF Possible memb 20.5 20 0.00043 29.2 -1.3 49 19-68 5-61 (67)
253 cd02345 ZZ_dah Zinc finger, ZZ 20.4 80 0.0017 24.6 2.1 29 19-52 2-32 (49)
254 PRK13751 putative mercuric tra 20.2 2.8E+02 0.006 25.9 5.8 24 268-291 47-70 (116)
255 cd02338 ZZ_PCMF_like Zinc fing 20.2 77 0.0017 24.7 1.9 30 19-53 2-33 (49)
256 PRK03988 translation initiatio 20.1 56 0.0012 30.9 1.4 27 19-45 104-132 (138)
No 1
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=7e-188 Score=1566.65 Aligned_cols=543 Identities=89% Similarity=1.433 Sum_probs=502.5
Q ss_pred CCCCCCCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccC
Q 009093 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (544)
Q Consensus 1 ~~~~~~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~g 80 (544)
||+.|+.++||++++++||||||||+||+|+|||+|||||||||||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCcccc
Q 009093 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (544)
Q Consensus 81 d~e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (544)
|||||+|+||+||||+|..+++...++++|+|++|+|+||++.+.++..++.+.+++++|+|++||.++||+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 95555558999999999654555567889999999999999988776667765445678999999988999997776666
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCC
Q 009093 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (544)
Q Consensus 161 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (544)
.++++.+ .||||||+|+.+.+.++|.|||+||+++|||||++||||||+||+||+|++.++.+....++++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 6655543 689999999766778899999999999999999999999999999999887776665444565543 33322
Q ss_pred cccccCccccccccCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 009093 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (544)
Q Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~q 319 (544)
++.+++|+++++++++||+||+++++++|+|||++++++|++|++||+||+++++.+++|+|+++|+||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22345789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecccchhhhhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhH
Q 009093 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (544)
Q Consensus 320 ~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf 399 (544)
++||+||+|.||++||++||++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+|||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999887778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccc
Q 009093 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (544)
Q Consensus 400 ~al~Eaa~FAr~WvPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~~ 479 (544)
|||.|||+||++||||||||+|||||||+||+++.++++++++|+|++||++|||||||||+|||+++++++++|+++|.
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 480 m~dg~~W~~~~~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
|+||++|||++++|||+||||+++++++.|.+|++||+||||||||||||+|||||||||||||+
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRV 544 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRV 544 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999996
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=2.9e-185 Score=1546.02 Aligned_cols=521 Identities=68% Similarity=1.201 Sum_probs=474.7
Q ss_pred CCCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCCCc
Q 009093 5 GETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREE 84 (544)
Q Consensus 5 ~~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~e~ 84 (544)
|++++||++++++||||||||+||+|+|||+|||||||||||||||||||||||||+|||||||||||||||||+|| ||
T Consensus 24 ~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GD-ee 102 (1085)
T PLN02400 24 SDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGD-ED 102 (1085)
T ss_pred ccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcc-cc
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCC-CCCCCccccCCCCCcccCCccccCCCCCCCccccccC
Q 009093 85 DGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDAS-APKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMA 163 (544)
Q Consensus 85 e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (544)
|||+||+||||+|..+++.+.+++ . |++.+.+ +++|++ +++|+|++||.++||+++++++|++++
T Consensus 103 edd~DDlenEf~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~----~~~p~lt~g~~~s~ei~~~~~~~~~~~ 168 (1085)
T PLN02400 103 EDDVDDLENEFNYAQGNGKARHQW---------Q-GEDIELSSSSRHES----QPIPLLTHGQPVSGEIPCATPDNQSVR 168 (1085)
T ss_pred cccchhhhhhhccccccccccccc---------c-ccCccccCcccccC----CCCccccCCcccCCCCCCCCCcccccc
Confidence 899999999999965333322221 1 5555543 445553 578999999999999998887877776
Q ss_pred CCCC---CCCCcc---cccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCCCCC
Q 009093 164 SPGV---GPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDID 237 (544)
Q Consensus 164 ~~~~---~~g~~v---~~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~~~~ 237 (544)
++.. +.|||| ||+|+ ..+++++.+|++||+++||||||+||||||+||+||+|++.++.+.. ++++|++++
T Consensus 169 ~~~~~~~~~~~~vh~~p~~d~-~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~--~~~~~g~~~ 245 (1085)
T PLN02400 169 TTSGPLGPAERNANSSPYIDP-RQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY--HEGKGGDME 245 (1085)
T ss_pred CCcccccccCCcccccCccCc-ccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc--ccccccCCC
Confidence 6532 356898 59884 33477899999999999999999999999999999998877666543 355555554
Q ss_pred CCcccccCccccccccCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 009093 238 ASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIF 317 (544)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL 317 (544)
+ ++++++|+++|+++++||+|++++++++|+|||++++++|++|++||+||+++++.+++|+|+++|+||+||+|+|+|
T Consensus 246 ~-~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll 324 (1085)
T PLN02400 246 G-TGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLL 324 (1085)
T ss_pred C-CCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 233467889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceecccchhhhhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchh
Q 009093 318 DQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (544)
Q Consensus 318 ~q~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~l 397 (544)
+|++||+||+|.||++||++||++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+|
T Consensus 325 ~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 404 (1085)
T PLN02400 325 DQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAML 404 (1085)
T ss_pred ccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHH
Confidence 99999999999999999999998877789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccc
Q 009093 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEG 477 (544)
Q Consensus 398 tf~al~Eaa~FAr~WvPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~ 477 (544)
||+||.|||+|||+||||||||+|||||||+||+++.++++++.+|+|++||++|||||||||+|||+|+++++++|+++
T Consensus 405 Tf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~ 484 (1085)
T PLN02400 405 TFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEG 484 (1085)
T ss_pred HHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 478 WVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 478 ~~m~dg~~W~~~~~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
|.|+|||+|||++++|||+||||||+++++.|.+|++||+||||||||||||+|||||||||||+|+
T Consensus 485 ~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRV 551 (1085)
T PLN02400 485 WTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRV 551 (1085)
T ss_pred cccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHH
Confidence 9999999999999999999999999999988999999999999999999999999999999999995
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=1.2e-181 Score=1512.91 Aligned_cols=529 Identities=63% Similarity=1.128 Sum_probs=481.3
Q ss_pred CCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCCCcC
Q 009093 6 ETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (544)
Q Consensus 6 ~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~e~e 85 (544)
++++||++++++||||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||
T Consensus 25 ~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d-~ee 103 (1094)
T PLN02436 25 IARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGD-EEE 103 (1094)
T ss_pred ccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-ccc
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred CCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCc----cccCCCCCcccCCccccCCCCCCCccccc
Q 009093 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDN----EVSHNHIPRLTGGQEVSGELSAASPEHLS 161 (544)
Q Consensus 86 ~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (544)
|++||+||||++.. ++.+.++++|+|++++|++|++.+.+..++.. +...+++|++++|| +++|++ ..+|+.
T Consensus 104 ~~~dd~e~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~ 179 (1094)
T PLN02436 104 DDIDDLENEFDYGN-NGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRHAL 179 (1094)
T ss_pred ccchhhhhhhcCcc-cccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--Cccccc
Confidence 88999999999873 44556788999999999999998766433322 11135789999988 578887 345666
Q ss_pred cCCCCCCCCCcc-c--ccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCCCCCC
Q 009093 162 MASPGVGPGKRI-H--YSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDA 238 (544)
Q Consensus 162 ~~~~~~~~g~~v-~--~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~~~~~ 238 (544)
++++.++.|||| | |+|. ..+++++.+||+||+++||||||+||||||+||+||+++++++.+ . ++++++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~-~--~~~~~~~~~~ 255 (1094)
T PLN02436 180 IVPPSTGHGNRVHPMPFPDS-SASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKH-E--GGNDGGNNDG 255 (1094)
T ss_pred ccCCcccccccccccccccc-cccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccccccc-c--cccccCCCCC
Confidence 677765678999 4 8773 234778999999999999999999999999999999855444333 2 4555555543
Q ss_pred CcccccCccccccccCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009093 239 STDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFD 318 (544)
Q Consensus 239 ~~~~~~~~~~~~~~~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~ 318 (544)
.+.+++|++++|++++||+||+++++++|+|||++++++|++|++||+||+++++.+++|+|+++|+||+||+|+|+|+
T Consensus 256 -~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll~ 334 (1094)
T PLN02436 256 -DELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILD 334 (1094)
T ss_pred -CCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHc
Confidence 1234678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceecccchhhhhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhh
Q 009093 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (544)
Q Consensus 319 q~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~lt 398 (544)
|++||+||+|.||++||++||++++++++||+|||||||+||.+|||++|+|||||+||+|||+|||+|||||||||+||
T Consensus 335 Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 414 (1094)
T PLN02436 335 QFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 414 (1094)
T ss_pred cCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHH
Confidence 99999999999999999999988878899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccc
Q 009093 399 FEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGW 478 (544)
Q Consensus 399 f~al~Eaa~FAr~WvPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~ 478 (544)
||||.|||+|||+||||||||+|||||||+||+++.++++++++++|++||++|||||||||+|||+|+++++++|+++|
T Consensus 415 f~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~ 494 (1094)
T PLN02436 415 FEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGW 494 (1094)
T ss_pred HHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cccCCCCCCCCCCCCCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 479 VMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 479 ~m~dg~~W~~~~~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
.|+|||+|||++++|||+||||||+++++.|.+|++||+||||||||||||+|||||||||||||+
T Consensus 495 ~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRV 560 (1094)
T PLN02436 495 TMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRV 560 (1094)
T ss_pred hhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhh
Confidence 999999999999999999999999999888999999999999999999999999999999999996
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=4.4e-170 Score=1419.76 Aligned_cols=472 Identities=66% Similarity=1.162 Sum_probs=429.1
Q ss_pred cccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCCCcCCCCCCCC
Q 009093 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 92 (544)
Q Consensus 13 ~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~e~e~~~dd~~ 92 (544)
+..++||||||||+||+|+|||+|||||||||||||||||||||||||+|||||||||||||||||+||||||+++||+|
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~~ 90 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDFE 90 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhhh
Confidence 67799999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCc
Q 009093 93 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 172 (544)
Q Consensus 93 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 172 (544)
|||++..+++. +.|++++|++|++.+.+++.. ++++|++++ ++|++
T Consensus 91 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~------------------- 136 (1044)
T PLN02915 91 DEFQIKSPQDH------EPVHQNVFAGSENGDYNAQQW-----RPGGPAFSS----TGSVA------------------- 136 (1044)
T ss_pred hhhcccccccc------chhhhhhccCCCCcccccccc-----CCCCccccC----CCCcC-------------------
Confidence 99998642211 228899999998876432111 134555655 23332
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCcccccCccccccc
Q 009093 173 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252 (544)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (544)
-+.+|++|| ||||++||||||+||+||+| ++.+.+. .+ +.++ ..+++|+++|++
T Consensus 137 ------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~~-~~~~~~~-----~~--~~~~--~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ------------GKDLEAERE----GYGNAEWKDRVDKWKTRQEK-RGLVNKD-----DS--DDGD--DKGDEEEYLLAE 190 (1044)
T ss_pred ------------CCCcCcccc----CcCCHHHHHHHHHHHhhhhh-hcccccc-----cc--CCCC--CCCCcccccccc
Confidence 134899888 89999999999999999974 3333331 11 1111 123578889999
Q ss_pred cCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcccceecccchhh
Q 009093 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (544)
Q Consensus 253 ~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~ 332 (544)
+++||+||+++++++|+|||++++++|++|++||+||+++|+.+++|+|+++|+||+||+|+|+|+|++||+||+|.||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhh
Q 009093 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (544)
Q Consensus 333 drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~W 412 (544)
+||++||++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+||||||+|||+||++|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999887888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCC
Q 009093 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 492 (544)
Q Consensus 413 vPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~~m~dg~~W~~~~~~ 492 (544)
|||||||+|||||||+||+++.++++++++++|++||++|||||||||+|||+|+++++++|++||+|+|||+|||++++
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 493 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 493 dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
|||+||||||+++++.|.+|++||+||||||||||||+|||||||||||+|+
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRV 482 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRV 482 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhh
Confidence 9999999999999988999999999999999999999999999999999996
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=9.8e-169 Score=1408.57 Aligned_cols=497 Identities=68% Similarity=1.180 Sum_probs=455.2
Q ss_pred CCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCCCcC
Q 009093 6 ETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (544)
Q Consensus 6 ~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~e~e 85 (544)
++++||++++++||||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||
T Consensus 23 ~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd-~ee 101 (1040)
T PLN02189 23 HEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGD-DDE 101 (1040)
T ss_pred ccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-ccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred CCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCc--cccCCCCCCCc--cccc
Q 009093 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQ--EVSGELSAASP--EHLS 161 (544)
Q Consensus 86 ~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~ 161 (544)
|++||+||||+|.. ++.+.++++|+|++++|++|++.+... +.+++|++++|| .+++|++..|+ +|+.
T Consensus 102 ~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1040)
T PLN02189 102 EDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPDDDE-------NNQFPPVITGVRSRPVSGEFPIGSGYGHGEQ 173 (1040)
T ss_pred ccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcccCC-------CcCCCcccccCccccccCCcCcccccccccc
Confidence 88999999999865 344467889999999999999876432 124678999987 37888874222 3444
Q ss_pred cCCCCCCCCCcc-c--ccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCCCCCC
Q 009093 162 MASPGVGPGKRI-H--YSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDA 238 (544)
Q Consensus 162 ~~~~~~~~g~~v-~--~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~~~~~ 238 (544)
++++. .|||| | |+| .+.+.|||+||++ ||||||+||+||++ .+++.
T Consensus 174 ~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~--------wk~rv~~wk~~~~~--------------~~~~~-- 222 (1040)
T PLN02189 174 MLSSS--LHKRVHPYPVSE-----PGSAKWDEKKEGG--------WKERMDDWKMQQGN--------------LGPDP-- 222 (1040)
T ss_pred ccCCc--ccCccCcccccC-----CCcccCCcccccc--------HHHHHHHHHhhccc--------------CCCCC--
Confidence 55554 58999 4 766 5568999999975 99999999999951 11111
Q ss_pred CcccccCccccccccCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009093 239 STDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFD 318 (544)
Q Consensus 239 ~~~~~~~~~~~~~~~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~ 318 (544)
+++++|+++++++++||+||+++++++|+|||++++++|++|++||+||+++++.+++|+|+++|+||+||+|+|+|+
T Consensus 223 --~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~ 300 (1040)
T PLN02189 223 --DDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILD 300 (1040)
T ss_pred --CCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHc
Confidence 223567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceecccchhhhhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhh
Q 009093 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (544)
Q Consensus 319 q~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~lt 398 (544)
|++||+||+|.||++||++||++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+||
T Consensus 301 q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 380 (1040)
T PLN02189 301 QFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLT 380 (1040)
T ss_pred cCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHH
Confidence 99999999999999999999988777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccc
Q 009093 399 FEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGW 478 (544)
Q Consensus 399 f~al~Eaa~FAr~WvPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~ 478 (544)
||||.|||+||++||||||||+|||||||+||+++.++++++.+++|++||++|||||||||+|||+++++++++|+++|
T Consensus 381 f~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~ 460 (1040)
T PLN02189 381 FEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGW 460 (1040)
T ss_pred HHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 479 VMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 479 ~m~dg~~W~~~~~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
.|+||++|||++++|||+||||+++++++.|++|++||+||||||||||||+|||||||||||+|+
T Consensus 461 ~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRV 526 (1040)
T PLN02189 461 IMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRV 526 (1040)
T ss_pred eeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999995
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=1.8e-157 Score=1312.40 Aligned_cols=445 Identities=63% Similarity=1.129 Sum_probs=397.6
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCCCcCCCCCCCCC
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGAS 93 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~e~e~~~dd~~~ 93 (544)
.+++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| ||+++||+||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk-------------~~~~~~d~~~ 69 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD-------------AENVFDDVET 69 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc-------------cccccchhhh
Confidence 457999999999999999999999999999999999999999999999999999999 3667899999
Q ss_pred ccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCcc
Q 009093 94 DFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRI 173 (544)
Q Consensus 94 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 173 (544)
||+-+ .+++ .++|++|++.+. +.+++|++++ . ++|+
T Consensus 70 ~~~~~------~~~~-----~~~~~~~~~~~~---------~~~~~~~~~~-~--~~~~--------------------- 105 (977)
T PLN02195 70 KHSRN------QSTM-----ASHLNDTQDVGI---------HARHISSVST-V--DSEL--------------------- 105 (977)
T ss_pred hhccc------hhhh-----hhhcccCcCCCC---------CCcccccccc-C--CCcc---------------------
Confidence 99422 2232 267777765321 0122333332 0 1111
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCcccccCcccccccc
Q 009093 174 HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEA 253 (544)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (544)
. | +|||++||||||+||.||+||+.++.+... .+ | ++++ +.+++|+++ |+.
T Consensus 106 ---------------~---~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~--~-~~~~--~~~~~~~~~-~~~ 156 (977)
T PLN02195 106 ---------------N---D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HK--A-QIPP--EQQMEEKPS-ADA 156 (977)
T ss_pred ---------------c---C----ccCCHHHHHHHHHHHHhhhhhccccccccc-cc--c-CCCC--ccCCccccc-ccc
Confidence 1 1 499999999999999999988776554321 12 2 2222 223567776 999
Q ss_pred CCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcccceecccchhhh
Q 009093 254 RQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLD 333 (544)
Q Consensus 254 ~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~d 333 (544)
++||+||+++++++|+|||++++++|++|++||+||+++++.+++|+|+++|+||+||+|+|+|+|++||+||+|.||++
T Consensus 157 ~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 236 (977)
T PLN02195 157 YEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYID 236 (977)
T ss_pred cCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhhH
Q 009093 334 RLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWV 413 (544)
Q Consensus 334 rL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~Wv 413 (544)
||++|+++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+|||+||.|||+||++||
T Consensus 237 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 316 (977)
T PLN02195 237 RLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWV 316 (977)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 99999988777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCC
Q 009093 414 PFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRD 493 (544)
Q Consensus 414 PFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~~m~dg~~W~~~~~~d 493 (544)
||||||+|||||||+||+++.++++++.+|+|++||++|||||||||+|||+|+++++++|+++|.|+|||+|||++++|
T Consensus 317 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~d 396 (977)
T PLN02195 317 PFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRD 396 (977)
T ss_pred ccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred CccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 494 HPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 494 Hp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
||+||||||+++++.|.+|++||+||||||||||||+|||||||||||+|+
T Consensus 397 Hp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrv 447 (977)
T PLN02195 397 HPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRV 447 (977)
T ss_pred CcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHH
Confidence 999999999999988999999999999999999999999999999999995
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=1.2e-128 Score=1088.06 Aligned_cols=438 Identities=48% Similarity=0.860 Sum_probs=366.8
Q ss_pred CccccccCCCcccc--cCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCCCcCC
Q 009093 9 VKSIKNVGGQVCQI--CGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 86 (544)
Q Consensus 9 ~k~~~~~~gqiCqI--CGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~e~e~ 86 (544)
.+.+++..+.+|.+ |+.+++.+++|+...+| ||+|.|||.||-+..+.| +.||+||++||.+ | +++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~--~~~ 183 (1135)
T PLN02248 116 HPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------D--LDD 183 (1135)
T ss_pred CcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------c--ccc
Confidence 46678889999998 99999999999999999 999999999999999996 8999999999854 2 222
Q ss_pred CCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccC-CCCCcccCCccccCCCCCCCccccccCCC
Q 009093 87 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSH-NHIPRLTGGQEVSGELSAASPEHLSMASP 165 (544)
Q Consensus 87 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (544)
+.+|.+.+ ... ++.. + .++.+...+. .....+..|| +|||+ |+
T Consensus 184 ~~~~~~~~----------~~~----~~~~------~----~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~----- 227 (1135)
T PLN02248 184 EVPDESSG----------ALP----LPPP------G----GSKMDRRLSLMKSNSLLMRSQ--TGDFD-----HN----- 227 (1135)
T ss_pred cccccccc----------ccc----CCCC------C----CcccccccccccccchhccCC--CCCCC-----Cc-----
Confidence 22221111 111 1110 0 0011110000 0011233445 57776 43
Q ss_pred CCCCCCcccccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCcccccC
Q 009093 166 GVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVD 245 (544)
Q Consensus 166 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
|||+++ +++|||||+.|++... . |++.++ ..
T Consensus 228 --------------------~w~~~~--~~~~~~~~~~~~~~~~-------------~---------~~~~~~-----~~ 258 (1135)
T PLN02248 228 --------------------RWLFET--KGTYGYGNAVWPKDDG-------------Y---------GDDGGG-----GG 258 (1135)
T ss_pred --------------------eeeeec--ccccccccccCccccc-------------c---------CCCCCc-----cc
Confidence 899998 8899999999998632 1 111111 11
Q ss_pred ccccccccCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhccccee
Q 009093 246 DSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLP 325 (544)
Q Consensus 246 ~~~~~~~~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~q~~kw~P 325 (544)
...+|+++|+||+||+++++++|+|||++++++|++|++||+||++|++.+++|+|+++|+||+||+|+|+|+|++||+|
T Consensus 259 ~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~P 338 (1135)
T PLN02248 259 PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCP 338 (1135)
T ss_pred cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 12568999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred cccchhhhhhhhhhhcc-----CCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHH
Q 009093 326 VNRETYLDRLSLRYERE-----GEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (544)
Q Consensus 326 v~R~t~~drL~~r~e~~-----~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~ 400 (544)
|+|.|+++||++||+.+ .++++||+|||||||+||.+|||++|+|||||+||+|||+|||+|||||||||+||||
T Consensus 339 v~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~ 418 (1135)
T PLN02248 339 INRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFE 418 (1135)
T ss_pred cccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHH
Confidence 99999999999999753 2357899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhh-----------
Q 009093 401 ALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAK----------- 469 (544)
Q Consensus 401 al~Eaa~FAr~WvPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~----------- 469 (544)
||.|||+||++||||||||+|||||||+||+++.++++++.+|+|++||++|||||||||+|||+|++.
T Consensus 419 AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~ 498 (1135)
T PLN02248 419 AMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAR 498 (1135)
T ss_pred HHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999631
Q ss_pred -------------------hcCCCcccccccCCCCCCCCC--------CCCCccceeeeecCCC------------CCCC
Q 009093 470 -------------------AQKIPEEGWVMQDGTPWPGNN--------TRDHPGMIQVFLGENG------------GLDA 510 (544)
Q Consensus 470 -------------------~~kvp~~~~~m~dg~~W~~~~--------~~dHp~iiqV~l~~~~------------~~d~ 510 (544)
.+++|+++| |+|||+|||+| ++|||+||||||++++ ..|.
T Consensus 499 ~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~ 577 (1135)
T PLN02248 499 EEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDF 577 (1135)
T ss_pred HHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccc
Confidence 245788999 99999999984 4699999999999754 1132
Q ss_pred --CCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 511 --EGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 511 --~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
.|++|||||||||||||||+|||||||||||+|+
T Consensus 578 ~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRV 613 (1135)
T PLN02248 578 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRA 613 (1135)
T ss_pred cccccccceeEEEecccCCCCCcccccchhhhHHHh
Confidence 3448999999999999999999999999999995
No 8
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=2.7e-95 Score=799.18 Aligned_cols=272 Identities=41% Similarity=0.749 Sum_probs=251.8
Q ss_pred cCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcccceecccchhh
Q 009093 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (544)
Q Consensus 253 ~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~ 332 (544)
+.+||++++++++++ ||++.+++++++++||+||++++++++ ++|+++++||+||+|+|+|+|+++|+|++|.++|
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999973 899999999999999999999988877 6899999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhh
Q 009093 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (544)
Q Consensus 333 drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~W 412 (544)
++|++|++ +||+||||||||||.+|||++|+||||||||+|||+|||+|||||||||+|||+||.|||+||++|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccCC--CCCCCCC
Q 009093 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG--TPWPGNN 490 (544)
Q Consensus 413 vPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~~m~dg--~~W~~~~ 490 (544)
|||||||+|||||||+||+++.+ .+.+++|++||++||+||||||+|||+++ +...|.+.++ .+|+++.
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998543 33457999999999999999999999985 2355666555 5888888
Q ss_pred CCCCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 491 TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 491 ~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
++|||+||||||+++++ +.+|++||+||||||||||+|+|||||||||||+|+
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRV 280 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRV 280 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHH
Confidence 99999999999999664 457999999999999999999999999999999996
No 9
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=3.5e-94 Score=792.09 Aligned_cols=277 Identities=34% Similarity=0.624 Sum_probs=256.5
Q ss_pred ccCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCch-hHHHHHHHHHHHHHHHHHHHhhcccceecccch
Q 009093 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNA-IALWLISVICEIWFAISWIFDQFPKWLPVNRET 330 (544)
Q Consensus 252 ~~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da-~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t 330 (544)
...+||++++++++.. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+|++|.+
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3567999999999864 6999999999999999999999966654 889999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHH
Q 009093 331 YLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 410 (544)
Q Consensus 331 ~~drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr 410 (544)
+++||+++++ .++||+|||||||+||.+|||++|+|||||+||+|||+|||+|||||||||+|||+||.|||+||+
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997663 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccCC-----CC
Q 009093 411 KWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG-----TP 485 (544)
Q Consensus 411 ~WvPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~~m~dg-----~~ 485 (544)
+||||||||+|||||||+||+++ +++|++||++||+||||||+|||+++++ +++|++ |.+.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~--------~~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSN--------SHSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccC--------CCccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 99999999999999999999987 2478899999999999999999999955 888877 444332 68
Q ss_pred CCCCC-CCCCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 486 WPGNN-TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 486 W~~~~-~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
|+++. ++|||+||||||+++++.|.+|++||+||||||||||||+|||||||||+|+|+
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrv 292 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRV 292 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHh
Confidence 98875 589999999999999888899999999999999999999999999999999994
No 10
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.5e-82 Score=696.82 Aligned_cols=194 Identities=77% Similarity=1.268 Sum_probs=191.8
Q ss_pred ccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhhHHHHHHcCCCcCCchhhh
Q 009093 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (544)
Q Consensus 351 VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~WvPFCkk~~IepRaPe~YF 430 (544)
|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+||||||.|||+||++||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCCC
Q 009093 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (544)
Q Consensus 431 s~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~~m~dg~~W~~~~~~dHp~iiqV~l~~~~~~d~ 510 (544)
+++.++++++.+++|++||++|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||||+++++.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS 544 (544)
Q Consensus 511 ~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~ 544 (544)
+|++||+||||||||||+|+|||||||||||+|+
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~Rv 194 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRV 194 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhccccccccc
Confidence 9999999999999999999999999999999996
No 11
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=6.7e-47 Score=315.05 Aligned_cols=80 Identities=71% Similarity=1.393 Sum_probs=42.0
Q ss_pred CccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCCCcCCCC
Q 009093 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDA 88 (544)
Q Consensus 9 ~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~e~e~~~ 88 (544)
+|||+++++||||||||+||+|+||++|||||||+|||||||||||||||+|+|||||||||||||||||+|| |+|||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gD-eeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGD-EEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS------S
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCC-ccccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 556655
Q ss_pred C
Q 009093 89 D 89 (544)
Q Consensus 89 d 89 (544)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.71 E-value=4.7e-17 Score=182.03 Aligned_cols=140 Identities=21% Similarity=0.414 Sum_probs=112.5
Q ss_pred HHHHHHH-HHHHHHHhhhhccCCCCch----hHHHHHHHHHHHHHHHHHHHhhcccceecccchhhhhhhhhhhccCCCC
Q 009093 272 RMVIFLR-LIILGIFLYYRIKNPVHNA----IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPS 346 (544)
Q Consensus 272 Rllivl~-lv~l~~Yl~WRit~p~~da----~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~s 346 (544)
|+++++. +++.++|++||++++++.. ..+.++++++|+++.++.+++.+..++|.+|.+.+.. .+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~~--------~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVPLP--------LDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCCC--------CCcc
Confidence 6665544 4567899999999976532 2356789999999999999999999999988764321 2356
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHH----HHHHHHHHHHhhHHHHHHcCCC
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE----ALSETSEFARKWVPFCKKYNIE 422 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~----al~Eaa~FAr~WvPFCkk~~Ie 422 (544)
.+|+|||+|||| ||++.++.+|+.|++++|||.+|+.|||+|||+++.|.. ...|+++-+..+..+|++++|.
T Consensus 129 ~~P~VsViIP~y---NE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 205 (713)
T TIGR03030 129 EWPTVDVFIPTY---NEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVN 205 (713)
T ss_pred cCCeeEEEEcCC---CCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcE
Confidence 799999999999 999999999999999999999999999999999988853 2333333445677899999876
No 13
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.65 E-value=5.3e-16 Score=176.64 Aligned_cols=113 Identities=28% Similarity=0.443 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhhhccCCCCc----hhHHHHHHHHHHHHHHHHHHHhhcccceecccchhhhhhhhhhhccCCCCCCc
Q 009093 274 VIFLRLIILGIFLYYRIKNPVHN----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLA 349 (544)
Q Consensus 274 livl~lv~l~~Yl~WRit~p~~d----a~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP 349 (544)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.+++.+..++|..|.+.+ ++ ...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--~~------~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--LP------KDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--CC------cccCCCC
Confidence 45566677899999999997652 234567899999999999999999999998886532 21 2345689
Q ss_pred cccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchh
Q 009093 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (544)
Q Consensus 350 ~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~l 397 (544)
.|||+|||| |||..++.+||.+++++|||.+|+.|||+|||.++-
T Consensus 261 ~VsViIPtY---NE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~ 305 (852)
T PRK11498 261 TVDIFVPTY---NEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE 305 (852)
T ss_pred cEEEEEecC---CCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH
Confidence 999999999 999999999999999999999999999999999853
No 14
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.16 E-value=1.7e-11 Score=95.14 Aligned_cols=48 Identities=31% Similarity=0.941 Sum_probs=29.8
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 78899997 7889999999 999999999999888788999999999996
No 15
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=98.32 E-value=4.3e-06 Score=94.82 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccCCCC-chh--------HHHHHHHHHHHHHHHHHHHhhcccceecccchhhhhhhhhhh
Q 009093 270 PYRMVIFLRLIILGIFLYYRIKNPVH-NAI--------ALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYE 340 (544)
Q Consensus 270 ~yRllivl~lv~l~~Yl~WRit~p~~-da~--------~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~drL~~r~e 340 (544)
.-|+++++..+++.+|..|++..... ++. .+..+++..+.+.+..-+++.+.... .|.+.. +...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~~--~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKYS--ISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCccc--CCcccc
Confidence 35666777777888899999887432 221 12344566677666666666554422 221111 110000
Q ss_pred ccCCCCCCccccEEeccCCCCCCChHhHHHHH----HHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhhHHHH
Q 009093 341 REGEPSQLAAVDIFVSTVDPLKEPPLVTANTV----LSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFC 416 (544)
Q Consensus 341 ~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTV----LSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~WvPFC 416 (544)
........|.|+|+||+| ||++..|..|+ .|+.+.+|| +++.+||+|||..+-+.. .|.+ .|..+|
T Consensus 116 ~~~~~~~~~~VaVliP~y---NEd~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~e~~----~~~~L~ 185 (691)
T PRK05454 116 GDPPPPPEARTAILMPIY---NEDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--AEEA----AWLELR 185 (691)
T ss_pred cCCCCCCCCceEEEEeCC---CCChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--HHHH----HHHHHH
Confidence 012345689999999999 99998665554 456668897 589999999999876533 2222 344588
Q ss_pred HHcC
Q 009093 417 KKYN 420 (544)
Q Consensus 417 kk~~ 420 (544)
++++
T Consensus 186 ~~~~ 189 (691)
T PRK05454 186 AELG 189 (691)
T ss_pred HhcC
Confidence 8885
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=2.2e-06 Score=88.42 Aligned_cols=54 Identities=35% Similarity=0.524 Sum_probs=49.9
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHH
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETS 406 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa 406 (544)
+|.|||+||+| ||++.++.+|+.|++++|||. +.|+|.|||+++-|++-+.|..
T Consensus 53 ~p~vsviiP~y---nE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~~ 106 (439)
T COG1215 53 LPKVSVIIPAY---NEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEELG 106 (439)
T ss_pred CCceEEEEecC---CCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHHH
Confidence 69999999999 999999999999999999997 8999999999998888766644
No 17
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.13 E-value=8.9e-06 Score=86.70 Aligned_cols=58 Identities=14% Similarity=0.290 Sum_probs=51.9
Q ss_pred CCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHH
Q 009093 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETS 406 (544)
Q Consensus 345 ~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa 406 (544)
++.+|.|+|+||+| ||. ..+.+||.|+++.+||.+++.|+|.|||.++-|.+-+.+++
T Consensus 45 ~~~~P~vsVIIP~y---Ne~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~ 102 (439)
T TIGR03111 45 IGKLPDITIIIPVY---NSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ 102 (439)
T ss_pred cCCCCCEEEEEEeC---CCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH
Confidence 35699999999999 888 78899999999999999999999999999999987766644
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=97.72 E-value=9.5e-05 Score=78.84 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=46.5
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHH
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Ea 405 (544)
..|.|.|+||+| ||+.. +..||.|+++.+|| ++.|+|.|||.++-|.+.+.+.
T Consensus 73 ~~p~vsViIP~y---NE~~~-i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~~ 125 (444)
T PRK14583 73 GHPLVSILVPCF---NEGLN-ARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDAL 125 (444)
T ss_pred CCCcEEEEEEeC---CCHHH-HHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHHH
Confidence 579999999999 99865 68999999999999 4899999999998887766553
No 19
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.60 E-value=2.5e-05 Score=81.92 Aligned_cols=49 Identities=31% Similarity=0.910 Sum_probs=45.2
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.|..|=+.+.++. .-|.+| -|||.|||.||..-|.+-|+.||.|+..|.
T Consensus 16 ~cplcie~mditd--knf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITD--KNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCccccccccccc--CCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 6999999999884 569999 999999999999889999999999999995
No 20
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=97.30 E-value=0.00042 Score=64.78 Aligned_cols=51 Identities=37% Similarity=0.559 Sum_probs=45.7
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAL 402 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al 402 (544)
|.|.|+|||| ||++.++..++.|+++.+||.+++.|+|.|||.+.-|.+-+
T Consensus 1 p~vsviip~~---n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~ 51 (234)
T cd06421 1 PTVDVFIPTY---NEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA 51 (234)
T ss_pred CceEEEEecC---CCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH
Confidence 6799999999 99989999999999999999999999999999887665433
No 21
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.12 E-value=0.0016 Score=68.41 Aligned_cols=55 Identities=29% Similarity=0.308 Sum_probs=47.4
Q ss_pred CCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 345 ~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
+..+|.|.|.||+| ||. ..+..++-|+++.+||. ++.|+|.|||.++-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~---Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~ 90 (384)
T TIGR03469 36 PEAWPAVVAVVPAR---NEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA 90 (384)
T ss_pred CCCCCCEEEEEecC---CcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH
Confidence 45689999999999 887 66789999999999995 589999999999888766554
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=97.03 E-value=0.0023 Score=66.95 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=46.1
Q ss_pred CCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 346 s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
...|.|.|+||+| ||+ ..+..|+.|+++.+|| ++.|+|.|||.++-|.+.+.+
T Consensus 51 ~~~p~vsViIp~y---ne~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~ 103 (420)
T PRK11204 51 KEYPGVSILVPCY---NEG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR 103 (420)
T ss_pred CCCCCEEEEEecC---CCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH
Confidence 4689999999999 886 5679999999999999 588999999999888766554
No 23
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=96.92 E-value=0.00051 Score=67.01 Aligned_cols=41 Identities=37% Similarity=0.365 Sum_probs=39.4
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCC--------CCCceEEEcCCCcch
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYP--------VDKVSCYVSDDGAAM 396 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP--------~dKlsVYVsDDGgs~ 396 (544)
|+||.| ||++.++.+||.|+++.||| .+|+.|+|.|||.+.
T Consensus 1 v~ip~y---NE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d 49 (244)
T cd04190 1 VCVTMY---NEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK 49 (244)
T ss_pred CEEeee---cCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc
Confidence 689999 99999999999999999999 789999999999997
No 24
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=96.91 E-value=0.0021 Score=64.58 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=35.2
Q ss_pred ccEEeccCCCCCCChHhHHHHHHHhhc----CCCCCCCceEEEcCCCcch
Q 009093 351 VDIFVSTVDPLKEPPLVTANTVLSILA----VDYPVDKVSCYVSDDGAAM 396 (544)
Q Consensus 351 VDVFI~TyDP~nEPp~vv~nTVLSaLA----~DYP~dKlsVYVsDDGgs~ 396 (544)
|-|||||| |||+.++++|+.+... .|| ..++.|||+|||..+
T Consensus 1 ~SIliP~~---ne~~~~l~~~l~~~~~~~~~~~~-~~~~eI~vldD~~d~ 46 (254)
T cd04191 1 TAIVMPVY---NEDPARVFAGLRAMYESLAKTGL-ADHFDFFILSDTRDP 46 (254)
T ss_pred CEEEEeCC---CCCHHHHHHHHHHHHHHHHhcCC-cCceEEEEECCCCCh
Confidence 56999999 9999999999999764 354 336999999999875
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=96.86 E-value=0.0015 Score=62.93 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=46.2
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|.|.||+| ||+ ..+..|+.|+++.+||.+++-|.|.|||.+.-|.+-+.+
T Consensus 1 p~vsIiIp~~---Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~ 52 (241)
T cd06427 1 PVYTILVPLY---KEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA 52 (241)
T ss_pred CeEEEEEecC---CcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH
Confidence 6799999999 997 678999999999999988999999999999888776544
No 26
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.71 E-value=0.0064 Score=63.51 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=44.6
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
..|.|.|+||+| ||... +..|+.|+++.|||. +.|+|.||+.++-|.+-+.+
T Consensus 39 ~~p~VSViiP~~---nee~~-l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~ 90 (373)
T TIGR03472 39 AWPPVSVLKPLH---GDEPE-LYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR 90 (373)
T ss_pred CCCCeEEEEECC---CCChh-HHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH
Confidence 489999999999 99875 679999999999996 88999999998888765543
No 27
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.56 E-value=0.0027 Score=66.35 Aligned_cols=62 Identities=24% Similarity=0.524 Sum_probs=52.0
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAIL 79 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~ 79 (544)
..++|.+|-.+..++.+=.++|. +||-.+|+.|.+--...|.+.||+|++..++.+=.|.+-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc
Confidence 45799999999999887778887 999999999998767789899999999998664444433
No 28
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=96.43 E-value=0.0056 Score=58.19 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=44.9
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Ea 405 (544)
|.|.|.|+|| ||. ..+..++.|+++.+||.+++-|.|.|| .++-|+..+.+.
T Consensus 1 p~vSViIp~y---Ne~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~ 52 (232)
T cd06437 1 PMVTVQLPVF---NEK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI 52 (232)
T ss_pred CceEEEEecC---CcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH
Confidence 5799999999 896 567899999999999999999999998 888888776653
No 29
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=96.38 E-value=0.0068 Score=57.93 Aligned_cols=57 Identities=32% Similarity=0.478 Sum_probs=48.8
Q ss_pred CCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 344 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 344 ~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
.....|.|-|+|+|| ||. ..+..++.|+++.+||.+++.|+|.|||.++-|.+.+.+
T Consensus 24 ~~~~~~~isVvip~~---n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 80 (251)
T cd06439 24 DPAYLPTVTIIIPAY---NEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE 80 (251)
T ss_pred CCCCCCEEEEEEecC---CcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH
Confidence 345689999999999 776 668999999999999998899999999999887765544
No 30
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=96.19 E-value=0.0059 Score=56.22 Aligned_cols=45 Identities=31% Similarity=0.372 Sum_probs=40.0
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEA 401 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~a 401 (544)
|+||+| ||+ ..+..|+-++++.+||.+++.|+|.|||.+.-|.+.
T Consensus 1 VvIp~~---ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~ 45 (183)
T cd06438 1 ILIPAH---NEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQV 45 (183)
T ss_pred CEEecc---chH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHH
Confidence 689999 888 678999999999999988999999999998776653
No 31
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.11 E-value=0.0086 Score=55.56 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=41.4
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALS 403 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~ 403 (544)
|+|||| ||+ ..+..||.|++..+||.+++.|+|.|||.+.-|.+-+.
T Consensus 1 viip~~---n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~ 47 (229)
T cd04192 1 VVIAAR---NEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE 47 (229)
T ss_pred CEEEec---CcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH
Confidence 689999 776 77899999999999999999999999999887766554
No 32
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=96.00 E-value=0.019 Score=63.63 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=46.9
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhh-cCCCCCCCceEEEcCCCcchhhHHHHHHHH
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETS 406 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaL-A~DYP~dKlsVYVsDDGgs~ltf~al~Eaa 406 (544)
..|.|.|+||.| ||. .++..||-+++ ++||| ++.|+|.||+..+-|...+.+.+
T Consensus 64 ~~p~vaIlIPA~---NE~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~ 118 (504)
T PRK14716 64 PEKRIAIFVPAW---REA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA 118 (504)
T ss_pred CCCceEEEEecc---Cch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH
Confidence 489999999999 996 58999999875 79996 69999999999999988877744
No 33
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.94 E-value=0.0058 Score=49.12 Aligned_cols=47 Identities=32% Similarity=0.849 Sum_probs=37.3
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCC--Cccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQ--CKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPq--CKTrYK 70 (544)
.+.+|++||+.|-. |+..|.|.+|+=|.=|.||+++ +.|-- |++.+.
T Consensus 4 ~~~~C~~Cg~~~~~---~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD---GDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGFE 52 (54)
T ss_pred cCccChhhCCcccC---CCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCcc
Confidence 35699999999743 6789999999999999999865 45554 666653
No 34
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.86 E-value=0.0032 Score=59.12 Aligned_cols=49 Identities=33% Similarity=0.456 Sum_probs=35.7
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALS 403 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~ 403 (544)
|.|.|+|++| ||+. .+..|+.|+++.+|| ++.|+|.||+.+.-+.+.+.
T Consensus 1 P~v~Vvip~~---~~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~ 49 (228)
T PF13641_consen 1 PRVSVVIPAY---NEDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILR 49 (228)
T ss_dssp --EEEE--BS---S-HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHH
T ss_pred CEEEEEEEec---CCHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHH
Confidence 7799999999 8877 888899999999995 49999999998866664433
No 35
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.80 E-value=0.015 Score=53.36 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=40.6
Q ss_pred cEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 352 DVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
.|+|||| ||+ ..+..++.|++...|| ++.|+|.|||.+.-|.+.+.+
T Consensus 1 sIvIp~y---n~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~ 47 (214)
T cd04196 1 AVLMATY---NGE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKE 47 (214)
T ss_pred CEEEEec---CcH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHH
Confidence 3799999 777 6679999999999999 699999999999888776554
No 36
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.39 E-value=0.028 Score=52.43 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=42.6
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|.|.||+| ||... +..++-|+++.+||. +.++|.|||.+.-|.+.+.+
T Consensus 1 p~vsviip~~---n~~~~-l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~ 50 (196)
T cd02520 1 PGVSILKPLC---GVDPN-LYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK 50 (196)
T ss_pred CCeEEEEecC---CCCcc-HHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH
Confidence 6799999999 88765 689999999999986 99999999999877665544
No 37
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.28 E-value=0.036 Score=52.47 Aligned_cols=42 Identities=31% Similarity=0.454 Sum_probs=38.4
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf 399 (544)
|+|||| ||++.++..++.|++..+||. +.|+|.|||.+.-|.
T Consensus 2 iiip~~---ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~ 43 (236)
T cd06435 2 IHVPCY---EEPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEAL 43 (236)
T ss_pred eeEeeC---CCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhH
Confidence 789999 999999999999999999995 789999999987765
No 38
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=95.18 E-value=0.083 Score=61.09 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=40.9
Q ss_pred CCCCccccEEeccCCCCCCChHhHHHHHHHhh-cCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 345 ~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaL-A~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
..+.|.|.|+||.| ||. .++.+||.+++ ++|||. +.|||.+|+...-|.+.+.+
T Consensus 59 ~~~~~~vsIlVPa~---nE~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~ 113 (727)
T PRK11234 59 KPDEKPLAIMVPAW---NET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDA 113 (727)
T ss_pred cCCCCCEEEEEecC---cch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHH
Confidence 35679999999999 887 67788888877 799996 99999954444444544443
No 39
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.07 E-value=0.028 Score=52.91 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=41.5
Q ss_pred cccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHH
Q 009093 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALS 403 (544)
Q Consensus 350 ~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~ 403 (544)
+|+|.|||| ||++..+..|+.|+++.+ ...|+|.|||.+.-|.+.|.
T Consensus 1 ~isVvIp~~---ne~~~~l~~~l~sl~~q~----~~eiivvdd~s~d~~~~~l~ 47 (235)
T cd06434 1 DVTVIIPVY---DEDPDVFRECLRSILRQK----PLEIIVVTDGDDEPYLSILS 47 (235)
T ss_pred CeEEEEeec---CCChHHHHHHHHHHHhCC----CCEEEEEeCCCChHHHHHHH
Confidence 488999999 999999999999999988 46899999999987777663
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.06 E-value=0.043 Score=50.34 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=42.6
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|.|.|+|| ||....+.+|+.|+++..||. +.|+|.|||.+.-+...+.+
T Consensus 1 p~vsiii~~~---n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~ 51 (202)
T cd04184 1 PLISIVMPVY---NTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK 51 (202)
T ss_pred CeEEEEEecc---cCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH
Confidence 5789999999 888788999999999999985 78999999998755554433
No 41
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.71 E-value=0.054 Score=45.34 Aligned_cols=52 Identities=25% Similarity=0.250 Sum_probs=44.8
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHH
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Ea 405 (544)
.|.|-|.|||| |++ ..+..+|.|++...|+. .-|.|.|||.+.-|-+-+.+.
T Consensus 2 ~~~~siiip~~---n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~~ 53 (291)
T COG0463 2 MPKVSVVIPTY---NEE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIEY 53 (291)
T ss_pred CccEEEEEecc---chh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHHH
Confidence 57899999999 777 89999999999999997 559999999998887755443
No 42
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.58 E-value=0.063 Score=50.46 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=42.3
Q ss_pred ccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 351 VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|.|+|| ||+ ..+.+|+-++++.+||..++.|+|.|||.+.-|..-+.+
T Consensus 2 ~sIiip~~---n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~ 51 (249)
T cd02525 2 VSIIIPVR---NEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE 51 (249)
T ss_pred EEEEEEcC---Cch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH
Confidence 78999999 776 457999999999999977899999999998876555443
No 43
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=94.53 E-value=0.14 Score=53.46 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=40.9
Q ss_pred CCCCccccEEeccCCCCCCChHhHHHHHHHhhcC------CCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAV------DYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 345 ~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~------DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
....|.|+|.||+| ||... +..++.++++. .+|...+.|+|.|||.++-|.+-+.+
T Consensus 66 ~~~~~~isVVIP~y---Ne~~~-i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~ 127 (333)
T PTZ00260 66 KDSDVDLSIVIPAY---NEEDR-LPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKD 127 (333)
T ss_pred CCCCeEEEEEEeeC---CCHHH-HHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHH
Confidence 34588999999999 88764 45555555442 34555789999999999988775544
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.69 E-value=0.12 Score=46.53 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=39.4
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|+|+|| |++ ..+.+++.|+++-.||. +.|+|.|||.+.-|.+-+.+
T Consensus 2 ivi~~~---n~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~~~ 47 (202)
T cd06433 2 IITPTY---NQA-ETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDIIKK 47 (202)
T ss_pred EEEecc---chH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHHHH
Confidence 789999 776 78899999999999985 89999999999887765543
No 45
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.28 E-value=0.13 Score=44.82 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=39.0
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|+|+|| |+ +..+.+|+.|+++..|| ...++|.|||...-+.+.+.+
T Consensus 1 vii~~~---~~-~~~l~~~l~sl~~~~~~--~~~iiivdd~s~~~~~~~~~~ 46 (166)
T cd04186 1 IIIVNY---NS-LEYLKACLDSLLAQTYP--DFEVIVVDNASTDGSVELLRE 46 (166)
T ss_pred CEEEec---CC-HHHHHHHHHHHHhccCC--CeEEEEEECCCCchHHHHHHH
Confidence 579999 78 67889999999999984 578999999998877776654
No 46
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=93.25 E-value=0.12 Score=44.28 Aligned_cols=46 Identities=43% Similarity=0.601 Sum_probs=39.2
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|+|| ||+ ..+.+|+.|+++-.|+ ...|+|.|||.+.-|..-+.+
T Consensus 1 Viip~~---n~~-~~l~~~l~sl~~q~~~--~~~iivvdd~s~d~t~~~~~~ 46 (180)
T cd06423 1 IIVPAY---NEE-AVIERTIESLLALDYP--KLEVIVVDDGSTDDTLEILEE 46 (180)
T ss_pred Ceeccc---ChH-HHHHHHHHHHHhCCCC--ceEEEEEeCCCccchHHHHHH
Confidence 579999 887 8899999999999985 588999999999887775544
No 47
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=93.16 E-value=0.18 Score=58.22 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=40.3
Q ss_pred CCCccccEEeccCCCCCCChHhHHHHHHHhh-cCCCCCCCceEEE---cCCCcchhhHHH
Q 009093 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYV---SDDGAAMLTFEA 401 (544)
Q Consensus 346 s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaL-A~DYP~dKlsVYV---sDDGgs~ltf~a 401 (544)
.+.|.|.|+||.| ||. .++..||-+++ ++||| ++.|+| -|||.+....+.
T Consensus 68 ~~~~~vsIlVPa~---nE~-~VI~~~v~~ll~~ldYp--~~~I~v~~~~nD~~T~~~~~~ 121 (703)
T PRK15489 68 RDEQPLAIMVPAW---KEY-DVIAKMIENMLATLDYR--RYVIFVGTYPNDAETITEVER 121 (703)
T ss_pred cCCCceEEEEeCC---CcH-HHHHHHHHHHHhcCCCC--CeEEEEEecCCCccHHHHHHH
Confidence 4578999999999 886 78999999987 89999 578999 799965444433
No 48
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=92.84 E-value=0.13 Score=36.44 Aligned_cols=44 Identities=34% Similarity=0.807 Sum_probs=33.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
.|.||.+.+ .+.++. ..|+-..|..|...-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~~-~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVVL-LPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceEe-cCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488999887 223322 35899999999986666678899999975
No 49
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.81 E-value=0.12 Score=44.57 Aligned_cols=49 Identities=29% Similarity=0.297 Sum_probs=37.8
Q ss_pred cEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHH
Q 009093 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETS 406 (544)
Q Consensus 352 DVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa 406 (544)
.|+|||| |+ +..+..|+.|++...++ ...|+|.|||.+.-|...+.+..
T Consensus 1 Svvip~~---n~-~~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~~~~~~~~~~ 49 (169)
T PF00535_consen 1 SVVIPTY---NE-AEYLERTLESLLKQTDP--DFEIIVVDDGSTDETEEILEEYA 49 (169)
T ss_dssp EEEEEES---S--TTTHHHHHHHHHHHSGC--EEEEEEEECS-SSSHHHHHHHHH
T ss_pred CEEEEee---CC-HHHHHHHHHHHhhccCC--CEEEEEecccccccccccccccc
Confidence 4899999 78 77888999999988444 58899999999887776665543
No 50
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.22 E-value=0.19 Score=46.71 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=40.1
Q ss_pred ccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 351 VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|.|+|| |++. .+..|+.|+++..|+ .+.|+|.|||.+.-|.+.+.+
T Consensus 1 vsvii~~~---n~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d~~~~~~~~ 48 (221)
T cd02522 1 LSIIIPTL---NEAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTDGTVAIARS 48 (221)
T ss_pred CEEEEEcc---CcHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCccHHHHHhc
Confidence 57899999 8876 679999999998884 589999999998877765544
No 51
>PRK10018 putative glycosyl transferase; Provisional
Probab=91.97 E-value=0.3 Score=49.93 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=38.2
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcc
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAA 395 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs 395 (544)
..|.|-|.|||| |++..+ ..||.|+++-.||. +.++|.|||.+
T Consensus 3 ~~p~VSVIip~y---N~~~~l-~~~l~Svl~Qt~~~--~EiIVVDDgS~ 45 (279)
T PRK10018 3 DNPLISIYMPTW---NRQQLA-IRAIKSVLRQDYSN--WEMIIVDDCST 45 (279)
T ss_pred CCCEEEEEEEeC---CCHHHH-HHHHHHHHhCCCCC--eEEEEEECCCC
Confidence 468899999999 888765 68999999999985 89999999987
No 52
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=91.74 E-value=0.35 Score=46.88 Aligned_cols=55 Identities=24% Similarity=0.177 Sum_probs=37.7
Q ss_pred CCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 346 s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
...|.|.|+||+| ||...+ ..++-++.........+.|+|.|||.+.-|.+.+.+
T Consensus 6 ~~~~~vsVvIp~y---ne~~~l-~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~ 60 (243)
T PLN02726 6 EGAMKYSIIVPTY---NERLNI-ALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQ 60 (243)
T ss_pred CCCceEEEEEccC---CchhhH-HHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHH
Confidence 3578999999999 887554 334433332222223789999999999888766544
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.70 E-value=0.22 Score=45.99 Aligned_cols=46 Identities=22% Similarity=0.099 Sum_probs=38.3
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|+|+|| ||+ ..+..++.|+++..||. ..|+|.|||.+.-|...+.+
T Consensus 1 viI~~~---n~~-~~l~~~l~sl~~q~~~~--~eiiivD~~s~d~t~~~~~~ 46 (202)
T cd04185 1 AVVVTY---NRL-DLLKECLDALLAQTRPP--DHIIVIDNASTDGTAEWLTS 46 (202)
T ss_pred CEEEee---CCH-HHHHHHHHHHHhccCCC--ceEEEEECCCCcchHHHHHH
Confidence 689999 776 67899999999999994 57999999999877765544
No 54
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.67 E-value=0.34 Score=44.48 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.2
Q ss_pred EEeccCCCCCCC-hHhHHHHHHHhhcCCCCCCCceEEEcCCCcchh
Q 009093 353 IFVSTVDPLKEP-PLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (544)
Q Consensus 353 VFI~TyDP~nEP-p~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~l 397 (544)
|+|||| |+. +..+..|+.|+++..||. ..+.|.|||.+.=
T Consensus 2 viip~~---n~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~d 42 (201)
T cd04195 2 VLMSVY---IKEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQ 42 (201)
T ss_pred EEEEcc---ccchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCch
Confidence 789999 775 689999999999999994 5789999998543
No 55
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.54 E-value=0.13 Score=48.51 Aligned_cols=51 Identities=29% Similarity=0.765 Sum_probs=38.5
Q ss_pred CcccccCCCcccCCCCCceeecCCC-CCCcchhhHHHHHh--cCCCCCCCCccccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERK--DGNQSCPQCKTRYKKH 72 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC-~FPVCRpCYeyErk--eG~q~CPqCKTrYKR~ 72 (544)
--|.||.|. ..-+-|.-=||| ||.||--||--=.| .-.-+||-|||-||..
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 469999875 223567765564 99999999965455 5568999999999954
No 56
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.75 E-value=0.36 Score=48.35 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=43.5
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|+|| ||++..+..||-|+++-.||....-|.|.|||.+.-|.+.+.+
T Consensus 2 IIIp~~---N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~ 50 (299)
T cd02510 2 VIIIFH---NEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE 50 (299)
T ss_pred EEEEEe---cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH
Confidence 789999 9988999999999999999866679999999999888876654
No 57
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=90.56 E-value=0.36 Score=45.54 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=39.3
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|+|| |+. ..+..|+-|+++..|| ..+.|+|.|||.+.-|.+-+.+
T Consensus 1 ViIp~y---n~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~i~~~ 47 (219)
T cd06913 1 IILPVH---NGE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAEIIEK 47 (219)
T ss_pred CEEeec---CcH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHHHHHH
Confidence 679999 664 6899999999999998 4699999999998888765444
No 58
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=90.44 E-value=0.31 Score=45.61 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=37.4
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALS 403 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~ 403 (544)
|+|||| ||. .++..||-|+++.+ | ++.|+|.|||.++-|.+.+.
T Consensus 1 ViIp~~---Ne~-~~l~~~l~sl~~~~-~--~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 1 VLVPCL---NEE-AVIQRTLASLLRNK-P--NFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred CEEecc---ccH-HHHHHHHHHHHhCC-C--CeEEEEEECCCCcCHHHHHh
Confidence 689999 887 67899999999988 4 58999999999988876543
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=90.33 E-value=0.54 Score=48.80 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=43.5
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
.|.|-|.||+| |++ ..+..++-|+++-.|+ .+.|.|.|||.+.-|.+-+.+
T Consensus 5 ~p~vSVIIP~y---N~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~ 55 (328)
T PRK10073 5 TPKLSIIIPLY---NAG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH 55 (328)
T ss_pred CCeEEEEEecc---CCH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH
Confidence 58899999999 776 6889999999999997 489999999999877665444
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=89.98 E-value=0.45 Score=42.87 Aligned_cols=48 Identities=25% Similarity=0.140 Sum_probs=40.0
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|+|+|| ||+ ..+..|+.|+....|+.....|+|.|||.+.-|.+.+.+
T Consensus 1 iii~~~---n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~ 48 (185)
T cd04179 1 VVIPAY---NEE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARE 48 (185)
T ss_pred Ceeccc---ChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHH
Confidence 579999 765 678899999999999766789999999998777665554
No 61
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=89.46 E-value=0.64 Score=41.88 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=37.3
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|++| |++ ..+..||-|+++..|+. +.|+|.|||.+.-|..-+.+
T Consensus 1 ivip~~---n~~-~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~t~~~~~~ 46 (182)
T cd06420 1 LIITTY---NRP-EALELVLKSVLNQSILP--FEVIIADDGSTEETKELIEE 46 (182)
T ss_pred CEEeec---CCh-HHHHHHHHHHHhccCCC--CEEEEEeCCCchhHHHHHHH
Confidence 579999 777 55799999999998874 78999999998877654443
No 62
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.69 E-value=0.35 Score=51.30 Aligned_cols=52 Identities=29% Similarity=0.882 Sum_probs=43.9
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
...|.||++.. +.+--.|++| -|+|-+|-+|.. -..+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 46899999986 3334679999 999999999996 6679999999999999743
No 63
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=87.48 E-value=0.7 Score=36.10 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=34.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
+|.||++-+- + +.+ ..||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~~-~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMK-D----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCC-C----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 7999999642 2 333 378999999999866666 689999998774
No 64
>PRK10063 putative glycosyl transferase; Provisional
Probab=87.34 E-value=0.88 Score=45.29 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=40.5
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcC-CCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAV-DYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~-DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|-|.|+|| |+. ..+..|+.|++++ ..+...+.|.|.|||.++-|.+-+.+
T Consensus 1 ~~vSVIi~~y---N~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~ 53 (248)
T PRK10063 1 MLLSVITVAF---RNL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLEN 53 (248)
T ss_pred CeEEEEEEeC---CCH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHH
Confidence 5688999999 874 4678999998764 33334689999999999988776544
No 65
>PHA02929 N1R/p28-like protein; Provisional
Probab=86.77 E-value=0.88 Score=46.41 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=40.5
Q ss_pred cCCCcccccCCCcccCC-CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.....|.||.+.+.-++ ....|..-..|+=.-|+.|.. +-...++.||-|++++-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 44679999999876443 112244445889999999996 55567899999999875
No 66
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=86.36 E-value=1.4 Score=36.68 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=38.9
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETS 406 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa 406 (544)
|.|+++ ++ +..+..|+.+++...|+ ...++|+||+....+...+.+..
T Consensus 1 iii~~~---~~-~~~l~~~l~s~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~ 48 (156)
T cd00761 1 VIIPAY---NE-EPYLERCLESLLAQTYP--NFEVIVVDDGSTDGTLEILEEYA 48 (156)
T ss_pred CEEeec---Cc-HHHHHHHHHHHHhCCcc--ceEEEEEeCCCCccHHHHHHHHH
Confidence 578899 66 46778999999999994 57899999999988777666544
No 67
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=86.29 E-value=0.99 Score=42.06 Aligned_cols=45 Identities=20% Similarity=0.037 Sum_probs=35.8
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAL 402 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al 402 (544)
|.|+|| ||+ ..+..|+-|++...| ...+.|+|.|||.+.-|.+-+
T Consensus 1 ViIp~y---n~~-~~l~~~l~sl~~q~~-~~~~eiiiVDd~S~d~t~~~~ 45 (224)
T cd06442 1 IIIPTY---NER-ENIPELIERLDAALK-GIDYEIIVVDDNSPDGTAEIV 45 (224)
T ss_pred CeEecc---chh-hhHHHHHHHHHHhhc-CCCeEEEEEeCCCCCChHHHH
Confidence 579999 886 446888989988888 345999999999988776543
No 68
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=85.45 E-value=1.3 Score=45.93 Aligned_cols=54 Identities=19% Similarity=0.082 Sum_probs=40.1
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
.-|.|.|+||+| ||... +..+|.++.+..+......|+|.|||.++-|.+-+.+
T Consensus 29 ~~~~vSVVIPay---Nee~~-I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~ 82 (306)
T PRK13915 29 AGRTVSVVLPAL---NEEET-VGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAA 82 (306)
T ss_pred CCCCEEEEEecC---CcHHH-HHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHH
Confidence 468899999999 88754 5677777776544222468999999999988765443
No 69
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.77 E-value=0.76 Score=48.15 Aligned_cols=53 Identities=21% Similarity=0.504 Sum_probs=45.1
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
+-|.+|--++-++. ++|.--|+|+.+.|-.|..---.-|...||.|.+.-...
T Consensus 1 ~~Cp~CKt~~Y~np--~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNP--DLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCc--cceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 35999998888876 688888899999999999766678889999999988643
No 70
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=83.97 E-value=0.73 Score=34.23 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=33.2
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCK 66 (544)
.|.||-+++.. ++..+... |+=-.|+.|..-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999765 66777774 9999999999744444 68999996
No 71
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=83.57 E-value=1.2 Score=41.72 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=35.8
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCC--CCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDY--PVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DY--P~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|++| ||. ..+..++-+++...| +...+.|+|.|||.+.-|.+-+.+
T Consensus 1 iiip~y---N~~-~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~ 50 (211)
T cd04188 1 VVIPAY---NEE-KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARK 50 (211)
T ss_pred CEEccc---ChH-HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHH
Confidence 579999 776 456777777776654 445689999999999877665544
No 72
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=82.34 E-value=2.2 Score=42.53 Aligned_cols=63 Identities=30% Similarity=0.627 Sum_probs=40.3
Q ss_pred CCCCCCCCCccc-cccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh---------------cCCCCCCC
Q 009093 1 MESEGETGVKSI-KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK---------------DGNQSCPQ 64 (544)
Q Consensus 1 ~~~~~~~~~k~~-~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk---------------eG~q~CPq 64 (544)
|+-+.++..+.+ ...+.-.|.||.|.+- ++.+ -.|+--.|++|-..-.. .+...||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv 73 (193)
T PLN03208 1 MEIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73 (193)
T ss_pred CCcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC
Confidence 444444443333 3344569999999752 3334 26899999999963211 13468999
Q ss_pred Cccccc
Q 009093 65 CKTRYK 70 (544)
Q Consensus 65 CKTrYK 70 (544)
|++...
T Consensus 74 CR~~Is 79 (193)
T PLN03208 74 CKSDVS 79 (193)
T ss_pred CCCcCC
Confidence 999885
No 73
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=79.77 E-value=1.2 Score=34.41 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.6
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPV 46 (544)
-+|.-||.++.+... .-+-|.+||+.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 338899999876
No 74
>PHA02862 5L protein; Provisional
Probab=78.90 E-value=1.5 Score=42.09 Aligned_cols=48 Identities=27% Similarity=0.569 Sum_probs=31.8
Q ss_pred CCcccccCCCcccCCCCCceeecCCC---CCCcchhhHHHH-HhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVC---AFPVCRPCYEYE-RKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC---~FPVCRpCYeyE-rkeG~q~CPqCKTrYK 70 (544)
+.+|-||-++- ++..-+| .| -==|=+.|..-= ...++..|++||++|.
T Consensus 2 ~diCWIC~~~~-----~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVC-----DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcC-----CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 56899998862 3335677 44 122335665422 3477899999999996
No 75
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=78.55 E-value=1.5 Score=31.88 Aligned_cols=26 Identities=27% Similarity=0.755 Sum_probs=19.2
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPV 46 (544)
+|.-||.++.+.. ++ -|-|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999999775 33 37999999875
No 76
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.52 E-value=1.4 Score=44.90 Aligned_cols=45 Identities=33% Similarity=0.860 Sum_probs=36.8
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH---HhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE---rkeG~q~CPqCKTrYK 70 (544)
--|.||=|..- |+.|-| ||---|-||. |- ....+|.||=||..-.
T Consensus 48 FdCNICLd~ak-----dPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 48 FDCNICLDLAK-----DPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred eeeeeeccccC-----CCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 38999977642 678888 9999999998 65 6688899999998654
No 77
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=78.34 E-value=0.99 Score=36.70 Aligned_cols=46 Identities=33% Similarity=0.768 Sum_probs=33.7
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
-|.|=.||..-.. ..+.+ ||=-||+-|+.-||-+| ||=|.||+...
T Consensus 7 ~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 4566667765222 23344 59999999999888877 99999999754
No 78
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=78.09 E-value=3.6 Score=37.44 Aligned_cols=48 Identities=25% Similarity=0.111 Sum_probs=30.3
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCC-CCCCceEEEcCCCcchhhHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDY-PVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DY-P~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|+|+|| ||+ ..+..++.++..+-+ +...+.|+|.|||.+.-|.+.+.+
T Consensus 1 viIp~~---n~~-~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~ 49 (181)
T cd04187 1 IVVPVY---NEE-ENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRE 49 (181)
T ss_pred CEEeec---Cch-hhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHH
Confidence 579999 776 344444444333222 122588999999999877665443
No 79
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=77.69 E-value=2.9 Score=28.18 Aligned_cols=39 Identities=38% Similarity=0.944 Sum_probs=27.3
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCC
Q 009093 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqC 65 (544)
|.||.+.. ..+.+ -.|+.-.|..|...-.+.++..||.|
T Consensus 1 C~iC~~~~-----~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-----KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-----CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78888871 12222 25888999999975555577789987
No 80
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=77.08 E-value=1.2 Score=51.15 Aligned_cols=46 Identities=26% Similarity=0.652 Sum_probs=28.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCC----cchhhHHHHHhcCCCCCCCCccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFP----VCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FP----VCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
+|.-||-.+ .+|.-| |.+||-+ .|.-|- .+...|..-||+|+++-.
T Consensus 3 ~Cp~Cg~~n---~~~akF--C~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFEN---PNNNRF--CQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcC---CCCCcc--ccccCCCCCCCcCCCCC-CCCCcccccccccCCccc
Confidence 455565553 222222 5555544 366665 467899999999999874
No 81
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=76.70 E-value=0.54 Score=38.57 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.5
Q ss_pred hhhHHHHHhcCCCCCCCCccccccc
Q 009093 48 RPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 48 RpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
+-|+++++.||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 4678889999999999999999644
No 82
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=74.64 E-value=2.6 Score=45.02 Aligned_cols=64 Identities=30% Similarity=0.729 Sum_probs=47.8
Q ss_pred ccccCCCcccc--cCCCcccCCCCCceeecCC-CCCCcchhhHH-----------------------HH-----------
Q 009093 12 IKNVGGQVCQI--CGDNVGKTVDGNPFVACDV-CAFPVCRPCYE-----------------------YE----------- 54 (544)
Q Consensus 12 ~~~~~gqiCqI--CGD~VGlt~~Ge~FVAC~E-C~FPVCRpCYe-----------------------yE----------- 54 (544)
+.+++|-.|.- ||-.+-... ..--|.|.. |+|-.||-|.| .|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EP-D~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEP-DQRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCC-CCCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45677889986 988765543 233588977 99999999998 22
Q ss_pred ----HhcCCCCCCCCcccccccCCCC
Q 009093 55 ----RKDGNQSCPQCKTRYKKHKGSP 76 (544)
Q Consensus 55 ----rkeG~q~CPqCKTrYKR~kgsp 76 (544)
+|-.++-||.|.++-.|.-|+-
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGCm 414 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGCM 414 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCceE
Confidence 3446678999999998877763
No 83
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=74.63 E-value=1.3 Score=47.18 Aligned_cols=30 Identities=27% Similarity=0.924 Sum_probs=25.4
Q ss_pred CCCcchhhHHHHHhcCC--CCCCCCccccccc
Q 009093 43 AFPVCRPCYEYERKDGN--QSCPQCKTRYKKH 72 (544)
Q Consensus 43 ~FPVCRpCYeyErkeG~--q~CPqCKTrYKR~ 72 (544)
+|.||+.|+..-+-+-+ +.||-|.|+|+..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 58899999987766666 9999999999843
No 84
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=74.46 E-value=0.57 Score=42.30 Aligned_cols=48 Identities=31% Similarity=0.723 Sum_probs=34.0
Q ss_pred cCCCcccccCCCcccCC-CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCC
Q 009093 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqC 65 (544)
.+...|.+|+...|+-. .| ..|..|...||+-|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999988764 34 89999999999999987334443445444
No 85
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=74.14 E-value=2.2 Score=33.79 Aligned_cols=28 Identities=25% Similarity=0.774 Sum_probs=19.1
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHH
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE 52 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYe 52 (544)
.|.|||.++|+... +.= +=|| ||..|++
T Consensus 1 ~C~iCg~kigl~~~----~k~-~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR----FKI-KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc----eec-cCcc-chHHHHH
Confidence 59999999999642 111 1134 7888886
No 86
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=71.39 E-value=4.1 Score=29.62 Aligned_cols=39 Identities=36% Similarity=0.907 Sum_probs=27.5
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCC
Q 009093 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqC 65 (544)
|.||-+.+.- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7888775332 44444 79999999999755555 7999987
No 87
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=70.65 E-value=4.7 Score=30.76 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=31.7
Q ss_pred cccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCcccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
.|.||.+..-- -.|. .|+=- +|..|+.--. .....||-|+++.++
T Consensus 4 ~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~-~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRD----VVLL---PCGHLCFCEECAERLL-KRKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHH-HTTSBBTTTTBB-SE
T ss_pred CCccCCccCCc----eEEe---CCCChHHHHHHhHHhc-ccCCCCCcCChhhcC
Confidence 69999997321 2344 46788 9999997444 488999999998763
No 88
>PRK00420 hypothetical protein; Validated
Probab=70.43 E-value=1.9 Score=39.44 Aligned_cols=28 Identities=39% Similarity=0.875 Sum_probs=22.6
Q ss_pred eecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-.|..|++|. ++.+.|.-.||.|+..+.
T Consensus 24 ~~CP~Cg~pL------f~lk~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 24 KHCPVCGLPL------FELKDGEVVCPVHGKVYI 51 (112)
T ss_pred CCCCCCCCcc------eecCCCceECCCCCCeee
Confidence 4688888887 334789899999999886
No 89
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=69.68 E-value=3.7 Score=29.68 Aligned_cols=40 Identities=30% Similarity=0.728 Sum_probs=30.2
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh-cCCCCCCCC
Q 009093 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQC 65 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk-eG~q~CPqC 65 (544)
|.||.+...... --..|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888754432 2347899999999986666 688889988
No 91
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=69.14 E-value=8.5 Score=40.10 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=37.7
Q ss_pred CccccEEeccCCCCCCChHh--HHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHH
Q 009093 348 LAAVDIFVSTVDPLKEPPLV--TANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETS 406 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~v--v~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa 406 (544)
.+.|.|.||+| ||...+ +...+.+++.- .+ ..+.|+|.|||.++-|.+-+.+.+
T Consensus 5 ~~~vSVVIP~y---NE~~~i~~~l~~l~~~~~~-~~-~~~EIIvVDDgS~D~T~~il~~~~ 60 (325)
T PRK10714 5 IKKVSVVIPVY---NEQESLPELIRRTTAACES-LG-KEYEILLIDDGSSDNSAEMLVEAA 60 (325)
T ss_pred CCeEEEEEccc---CchhhHHHHHHHHHHHHHh-CC-CCEEEEEEeCCCCCcHHHHHHHHH
Confidence 46799999999 887543 33444444321 11 247899999999999988776644
No 92
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=67.20 E-value=1.9 Score=46.09 Aligned_cols=36 Identities=28% Similarity=0.806 Sum_probs=27.7
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhHHHHHhcC
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC-~FPVCRpCYeyErkeG 58 (544)
-|.+|--++- .-.|+-|+|| +|-.|-||+.--...|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 6888876643 3589999999 9999999996444344
No 93
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=66.76 E-value=6.6 Score=38.24 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=34.2
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCC---CcchhhHHHH-HhcCCCCCCCCccccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYE-RKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~F---PVCRpCYeyE-rkeG~q~CPqCKTrYKR~ 72 (544)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-= ...++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456999997763 2334578 5532 2346787643 345789999999999744
No 94
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=65.83 E-value=4.1 Score=43.44 Aligned_cols=43 Identities=35% Similarity=0.854 Sum_probs=35.3
Q ss_pred CCCCCceeecCCCCCCc--------ch--hhHHHHHhcCCCCCCCCccccccc
Q 009093 30 TVDGNPFVACDVCAFPV--------CR--PCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 30 t~~Ge~FVAC~EC~FPV--------CR--pCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
..+|...--|.-|+||| |+ +||+-.|.+..+.||.|-.+-.|.
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRI 136 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHH
Confidence 34566667799999998 54 799888999999999999988765
No 95
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=65.50 E-value=9.1 Score=36.96 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=32.5
Q ss_pred ccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHH
Q 009093 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEA 401 (544)
Q Consensus 351 VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~a 401 (544)
|-|+|+|| ||.. .+..|+.|+... . -.|+|.|||.++-|.+-
T Consensus 2 isvii~~~---Ne~~-~l~~~l~sl~~~--~---~eiivvD~gStD~t~~i 43 (229)
T cd02511 2 LSVVIITK---NEER-NIERCLESVKWA--V---DEIIVVDSGSTDRTVEI 43 (229)
T ss_pred EEEEEEeC---CcHH-HHHHHHHHHhcc--c---CEEEEEeCCCCccHHHH
Confidence 67999999 7764 578888888754 1 27999999999877653
No 96
>PRK07220 DNA topoisomerase I; Validated
Probab=64.85 E-value=3.6 Score=48.01 Aligned_cols=48 Identities=19% Similarity=0.587 Sum_probs=32.9
Q ss_pred CcccccCCCcccC--CCCCceeecCCCCCCcchhhHHHHHh----cCCCCCCCCcc
Q 009093 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKT 67 (544)
Q Consensus 18 qiCqICGD~VGlt--~~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCKT 67 (544)
..|..||.++.+. ..|..|+.|. +||-|+.-+....+ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799996 67888866543321 13478999985
No 97
>PF04641 Rtf2: Rtf2 RING-finger
Probab=63.11 E-value=6.7 Score=39.96 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=38.5
Q ss_pred CCcccccCCCcccCCCCC-ceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge-~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-+|.|++..+ +|- -||+=--||=-+|..|.+ |.+ .+..||.|.++|.
T Consensus 113 ~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alk-e~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 113 RFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALK-ELK-KSKKCPVCGKPFT 161 (260)
T ss_pred eeECCCCCccc----CCceeEEEEcCCCCEeeHHHHH-hhc-ccccccccCCccc
Confidence 34999999886 343 699888999888888886 666 4578999999997
No 98
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=62.81 E-value=5.9 Score=32.02 Aligned_cols=33 Identities=33% Similarity=0.708 Sum_probs=24.6
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchh
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP 49 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRp 49 (544)
.+|+|..||..+..+..+..| -|..|||-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~-~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVF-TCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceE-EcCCCCCEECcH
Confidence 688999999998875555554 487898876554
No 99
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=62.47 E-value=5.1 Score=30.49 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=18.2
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPV 46 (544)
..|+-||..+.+++... -+-|..||.++
T Consensus 4 y~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 36888888777765544 35666666654
No 100
>PHA02926 zinc finger-like protein; Provisional
Probab=62.41 E-value=9.7 Score=39.09 Aligned_cols=61 Identities=25% Similarity=0.525 Sum_probs=42.1
Q ss_pred cCCCcccccCCCcccC--CCCCceeecCCCCCCcchhhHHHHHhc-----CCCCCCCCcccccccCCC
Q 009093 15 VGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKKHKGS 75 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt--~~Ge~FVAC~EC~FPVCRpCYeyErke-----G~q~CPqCKTrYKR~kgs 75 (544)
.....|.||-+.|--. .+..-|--=..|+-.-|..|..--++. +...||.|+++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 3456899999997543 222234444568899999999755542 246799999999865444
No 101
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=61.88 E-value=14 Score=39.56 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=34.3
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchh
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~l 397 (544)
|.|.|| |- |..+..|+-|+++..+-.+...+||++||....
T Consensus 4 Vlv~ay---NR-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~ 44 (334)
T cd02514 4 VLVIAC---NR-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE 44 (334)
T ss_pred EEEEec---CC-HHHHHHHHHHHHhccccCCCceEEEEeCCCchH
Confidence 778899 55 688999999999987555789999999998754
No 102
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=61.46 E-value=6.9 Score=42.85 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.5
Q ss_pred CceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 34 NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 34 e~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
+--++|++|+..+ ..+...||+|++.-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3467899999964 23445899999988655
No 103
>PRK04023 DNA polymerase II large subunit; Validated
Probab=61.07 E-value=6.1 Score=47.73 Aligned_cols=46 Identities=22% Similarity=0.663 Sum_probs=31.6
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCC-----cchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFP-----VCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FP-----VCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.....|.-||-.. .+..|.+||=. .|.-| ....+.-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C---G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC---GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc---cCcCCCCcCCCCCCCCC
Confidence 3456899999883 55689999853 57777 22233366999987654
No 104
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=60.91 E-value=6 Score=36.44 Aligned_cols=50 Identities=34% Similarity=0.767 Sum_probs=36.6
Q ss_pred ccCCCcccccCCCcccC--CCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCcc
Q 009093 14 NVGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt--~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCKT 67 (544)
...+++|..||....+- ..| -|+.|. .||.|+- |.- ........||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 34578999999996654 468 999994 6999996 221 12255588999997
No 105
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=59.82 E-value=5.9 Score=43.15 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=21.7
Q ss_pred ceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
--++|++|+..+ . ......||+|++.-.|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 13346899999987544
No 106
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=59.79 E-value=11 Score=28.21 Aligned_cols=43 Identities=23% Similarity=0.618 Sum_probs=31.6
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcc
Q 009093 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKT 67 (544)
|.||-... +++.. ++.= .||=-+|..|.+-- ......||.|++
T Consensus 2 C~~C~~~~--~~~~~-~~l~-~CgH~~C~~C~~~~-~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERR-PRLT-SCGHIFCEKCLKKL-KGKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCC-eEEc-ccCCHHHHHHHHhh-cCCCCCCcCCCC
Confidence 88999998 33223 3333 68999999999643 367789999985
No 107
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=58.69 E-value=9 Score=29.19 Aligned_cols=30 Identities=33% Similarity=0.842 Sum_probs=24.8
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhHHH
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEY 53 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~-FPVCRpCYey 53 (544)
.|.+|+-.| . | ....|.+|. |-+|..||..
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCc
Confidence 589999843 2 4 789999997 9999999973
No 108
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=57.72 E-value=2.5e+02 Score=32.79 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=47.0
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHH---hhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhhHHHHHHcCCCcC
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLS---ILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLS---aLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~WvPFCkk~~IepR 424 (544)
+-.--|..||| ||.+.-|.--+.+ .+|--=-.+.+-+||+-|.+.+. -+++|...|++ ||++.+-+-+
T Consensus 143 ~hrTAilmPiy---nEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpd--ialAEq~a~~~----l~~e~~g~~~ 213 (736)
T COG2943 143 LHRTAILMPIY---NEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPD--IALAEQKAWAE----LCRELGGEGN 213 (736)
T ss_pred ccceeEEeecc---ccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCch--hhhhHHHHHHH----HHHHhCCCCc
Confidence 34456999999 9998766543332 33333345689999999987643 36778777777 9999885443
No 109
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=56.54 E-value=12 Score=28.40 Aligned_cols=33 Identities=27% Similarity=0.915 Sum_probs=26.1
Q ss_pred CCcccccCCCcccCCCCCceeecCCC-CCCcchhhHHHH
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYE 54 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC-~FPVCRpCYeyE 54 (544)
...|.+|+..| .|.-| -|..| .|-+|..||..-
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~ 37 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKG 37 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCc
Confidence 45899999843 25666 79999 999999999743
No 110
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=55.32 E-value=11 Score=29.20 Aligned_cols=30 Identities=27% Similarity=0.938 Sum_probs=25.6
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhHH
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC-~FPVCRpCYe 52 (544)
.|..|+.++. +...+.|.+| .|-+|-.||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5889997653 4589999999 9999999996
No 111
>PRK14973 DNA topoisomerase I; Provisional
Probab=54.55 E-value=9 Score=46.10 Aligned_cols=48 Identities=21% Similarity=0.591 Sum_probs=31.7
Q ss_pred CcccccCCCcccC--CCCCceeecCCCCCCcchhhHHHHHh-cC-----CCCCCCCccc
Q 009093 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK-DG-----NQSCPQCKTR 68 (544)
Q Consensus 18 qiCqICGD~VGlt--~~Ge~FVAC~EC~FPVCRpCYeyErk-eG-----~q~CPqCKTr 68 (544)
..|.-||.++-+. ..|. |..|. +||-|+..+..... .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999876432 2344 99996 66888866543211 11 3689999973
No 112
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=54.37 E-value=4.7 Score=28.96 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=11.8
Q ss_pred HHHhcCCCCCCCCccccc
Q 009093 53 YERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 53 yErkeG~q~CPqCKTrYK 70 (544)
|+-.+....||.|+.+-.
T Consensus 11 y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 11 YDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred ECCCcCCCcCcCCCCcHH
Confidence 343346789999987543
No 113
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.22 E-value=10 Score=41.50 Aligned_cols=51 Identities=22% Similarity=0.604 Sum_probs=35.7
Q ss_pred ccccCC-CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 12 IKNVGG-QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 12 ~~~~~g-qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 20 l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 344433 49999998642 2333 368999999999754433 468999999875
No 114
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=54.08 E-value=5.5 Score=43.93 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=35.3
Q ss_pred CcccccCCCcccCCCCCceeecCCCC-CCcchhhHHHHHhcCCCCCCCCcccccccC
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYKKHK 73 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~-FPVCRpCYeyErkeG~q~CPqCKTrYKR~k 73 (544)
..|..|..+| +|-.+|-|.||. |-+|-+|+.--.--|. -||.-+|.-.+
T Consensus 15 y~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~---H~~~H~Yrim~ 64 (438)
T KOG0457|consen 15 YNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGK---HQNDHPYRIMD 64 (438)
T ss_pred CCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCC---CCCCCCceeec
Confidence 4899999875 366899999998 9999999963332332 24556776443
No 115
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=53.63 E-value=7.1 Score=44.13 Aligned_cols=44 Identities=27% Similarity=0.540 Sum_probs=26.8
Q ss_pred ccCCCcccccCCCcccCCCCCc-----------eee-----cCCCCCCcchhhHHHHHhcC
Q 009093 14 NVGGQVCQICGDNVGKTVDGNP-----------FVA-----CDVCAFPVCRPCYEYERKDG 58 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~-----------FVA-----C~EC~FPVCRpCYeyErkeG 58 (544)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||.. ...|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~-l~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALK-LEEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHH-HHHH
Confidence 3445689999999555444322 222 012378999999974 3444
No 116
>PRK11827 hypothetical protein; Provisional
Probab=53.56 E-value=9.3 Score=31.57 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=12.3
Q ss_pred CCCCCCCcccccccCCCCc
Q 009093 59 NQSCPQCKTRYKKHKGSPA 77 (544)
Q Consensus 59 ~q~CPqCKTrYKR~kgspr 77 (544)
.=+|..|+-.|--..|-|-
T Consensus 26 ~Lic~~~~laYPI~dgIPV 44 (60)
T PRK11827 26 ELICKLDNLAFPLRDGIPV 44 (60)
T ss_pred eEECCccCeeccccCCccc
Confidence 3567778888865555553
No 117
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.31 E-value=8.3 Score=40.45 Aligned_cols=40 Identities=40% Similarity=1.011 Sum_probs=29.0
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCC--------------CCcchhhHHHHHhcCCCCCCCC
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCA--------------FPVCRPCYEYERKDGNQSCPQC 65 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~--------------FPVCRpCYeyErkeG~q~CPqC 65 (544)
..++..|.-||+ .-|++|-.|+ |.-|..|-| +|-..||-|
T Consensus 226 ~~~~~~C~~CGg--------~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNE----NGLvrCp~C 279 (281)
T KOG2824|consen 226 CEGGGVCESCGG--------ARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNE----NGLVRCPVC 279 (281)
T ss_pred CCCCCcCCCcCC--------cceEecCCCCCceeeeeeccCCCcEEECcccCC----CCceeCCcc
Confidence 556789999985 4799998883 455666664 666777766
No 118
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=52.71 E-value=11 Score=28.45 Aligned_cols=44 Identities=30% Similarity=0.795 Sum_probs=30.7
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh-----cCCCCCCCCc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCK 66 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk-----eG~q~CPqCK 66 (544)
+|+|||. ..+++..|.|..|+--+=..|.....+ ++.=.||.|+
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5999999 556778999999987666666654422 3345666664
No 119
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=52.40 E-value=18 Score=29.85 Aligned_cols=47 Identities=23% Similarity=0.641 Sum_probs=34.8
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-|..|+.++--+. .+-++-=.||-| |.+|-+-.. ..+||.|+--+-
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCccc
Confidence 36999999976654 355666679988 999997433 479999987654
No 120
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=52.31 E-value=18 Score=34.05 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=30.3
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhh
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~lt 398 (544)
+.|+|| ||....+..||.|+++- ...|.|.|||...-+
T Consensus 1 ~vI~~y---n~~~~~l~~~l~sl~~q-----~~~iivvDn~s~~~~ 38 (237)
T cd02526 1 AVVVTY---NPDLSKLKELLAALAEQ-----VDKVVVVDNSSGNDI 38 (237)
T ss_pred CEEEEe---cCCHHHHHHHHHHHhcc-----CCEEEEEeCCCCccH
Confidence 468999 89989999999999985 356888888765443
No 121
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=52.07 E-value=9.4 Score=26.61 Aligned_cols=28 Identities=29% Similarity=0.828 Sum_probs=12.1
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpC 50 (544)
.|.+||..+.. ..+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~~----~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG----GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S------EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC----CceEECccCCCccChhc
Confidence 58999988654 57889999999998877
No 122
>PRK03982 heat shock protein HtpX; Provisional
Probab=51.62 E-value=63 Score=33.33 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=36.4
Q ss_pred HHHHHHHhhcccceecccchhhhhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEc
Q 009093 311 FAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVS 390 (544)
Q Consensus 311 f~~~wlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVs 390 (544)
+.-.|+.-.+.+.+|+.+...++ |.+.+++-.....+|...|+|--. ..| .|.++-....+-.|.|+
T Consensus 47 ~~~~~i~~~~~~~~~l~~~~~p~-L~~~v~~la~~~g~~~p~v~v~~~---~~~---------NAfa~G~~~~~~~V~vt 113 (288)
T PRK03982 47 YYSDKIVLASYNARIVSEEEAPE-LYRIVERLAERANIPKPKVAIVPT---QTP---------NAFATGRDPKHAVVAVT 113 (288)
T ss_pred HHhHHHHHHhcCCEECChhhhHH-HHHHHHHHHHHcCCCCCeEEEEeC---CCc---------ceEEeccCCCCeEEEee
Confidence 33455555677889997665442 333332212234566668877532 233 35555554445556665
Q ss_pred CC
Q 009093 391 DD 392 (544)
Q Consensus 391 DD 392 (544)
|.
T Consensus 114 ~g 115 (288)
T PRK03982 114 EG 115 (288)
T ss_pred hH
Confidence 53
No 123
>PRK07219 DNA topoisomerase I; Validated
Probab=51.25 E-value=9 Score=45.25 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=32.2
Q ss_pred CCcccccCCCcccC--CCCCceeecCCCCCCcchhhHHHHH----hcCCCCCCCCccccccc
Q 009093 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 17 gqiCqICGD~VGlt--~~Ge~FVAC~EC~FPVCRpCYeyEr----keG~q~CPqCKTrYKR~ 72 (544)
...|..||..+.+. -.|. |..|. +||-|+.-+..-. ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 35788888665443 2455 88885 6777764332211 12347899999876543
No 124
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=51.14 E-value=10 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=24.7
Q ss_pred cCCCcccccCCC---cccCCCCCceeecCCCCCC
Q 009093 15 VGGQVCQICGDN---VGKTVDGNPFVACDVCAFP 45 (544)
Q Consensus 15 ~~gqiCqICGD~---VGlt~~Ge~FVAC~EC~FP 45 (544)
..|-+|.-|+.- +...+||...|-|-+|||.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 457799999854 4455788889999999985
No 125
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.67 E-value=2.1 Score=46.06 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=39.9
Q ss_pred cCCC-cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccc
Q 009093 15 VGGQ-VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (544)
Q Consensus 15 ~~gq-iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrY 69 (544)
..++ +|.||-+=|-.| .--.||+-..|+.|.--..+.||.-||-|++..
T Consensus 40 ~~~~v~c~icl~llk~t------mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT------MTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hhhhhccHHHHHHHHhh------cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 3344 899998876655 223489999999999999999999999999876
No 126
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.63 E-value=9.5 Score=36.00 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=34.9
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCK 66 (544)
.--.|.||-+...-. ....|+--.|+.|-..-.. +.-.||.|+
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 345899999885543 5667899999999986666 778999999
No 127
>PRK11595 DNA utilization protein GntX; Provisional
Probab=46.98 E-value=14 Score=36.69 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=25.5
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
.+.|.+||..+..+. ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 457999998874321 23788887643222 3589999865
No 128
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=46.34 E-value=10 Score=36.82 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=40.4
Q ss_pred CcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 26 NVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 26 ~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-||+..+|-.=+-|.-|||.-|..=.+.++...+-.=|+|.-+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 378889999999999999999999888888888889999999996
No 129
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=45.81 E-value=14 Score=29.22 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=17.4
Q ss_pred cccccCCC-cccCC-CCC-----ceeecCCCCC
Q 009093 19 VCQICGDN-VGKTV-DGN-----PFVACDVCAF 44 (544)
Q Consensus 19 iCqICGD~-VGlt~-~Ge-----~FVAC~EC~F 44 (544)
-|.-||.. |.+.. .+. .+|-|++|+.
T Consensus 5 PCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 59999955 33332 222 7899999876
No 130
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=45.16 E-value=16 Score=29.54 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=11.1
Q ss_pred CcccccCCCcccCC
Q 009093 18 QVCQICGDNVGKTV 31 (544)
Q Consensus 18 qiCqICGD~VGlt~ 31 (544)
..|..||..|.+..
T Consensus 3 ~~CP~CG~~iev~~ 16 (54)
T TIGR01206 3 FECPDCGAEIELEN 16 (54)
T ss_pred cCCCCCCCEEecCC
Confidence 37999999988863
No 131
>PRK12495 hypothetical protein; Provisional
Probab=45.01 E-value=9.9 Score=38.76 Aligned_cols=30 Identities=33% Similarity=0.840 Sum_probs=22.2
Q ss_pred ceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
+-.-|.+||.||= ...|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3445777777764 34898999999999873
No 132
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=44.92 E-value=8.9 Score=27.63 Aligned_cols=25 Identities=32% Similarity=0.821 Sum_probs=12.3
Q ss_pred CcccccCCCcccCCCCCceeecCCCCC
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~F 44 (544)
.-|..||.+-.+ +||.+|| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 358889988766 6787775 888875
No 133
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=44.40 E-value=21 Score=29.70 Aligned_cols=48 Identities=31% Similarity=0.661 Sum_probs=34.3
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCC-CCCCCCc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCK 66 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~-q~CPqCK 66 (544)
..+|-.||-.|-..+.+-.| +|..||=-+-.=|-. -|+-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~~-CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCAK-CRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhhh-HHHcCCceECCCcC
Confidence 45899999998887766555 799999544444543 356665 5799886
No 134
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=44.19 E-value=11 Score=30.05 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=21.2
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPV 46 (544)
.-+|..||-+|.++. ...-+.|..|||.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 457999999996543 23458898899875
No 135
>PF12773 DZR: Double zinc ribbon
Probab=42.25 E-value=19 Score=27.40 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.8
Q ss_pred CCcccccCCCcc
Q 009093 17 GQVCQICGDNVG 28 (544)
Q Consensus 17 gqiCqICGD~VG 28 (544)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 445666665555
No 136
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=42.13 E-value=18 Score=26.46 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY 53 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey 53 (544)
...|..|++. .+-.-|.+|..+||..|...
T Consensus 3 ~~~C~~H~~~-------~~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEE-------PLSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTS-------BEEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCcc-------ceEEEecCCCCccCccCCCC
Confidence 4578888764 25678999999999999964
No 137
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=41.86 E-value=1.8e+02 Score=29.73 Aligned_cols=60 Identities=23% Similarity=0.438 Sum_probs=46.7
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhhHHHHHHcCC
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNI 421 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~WvPFCkk~~I 421 (544)
|+|||- -.-|-|+--|+.+..+-.++.+.+.|.=..||...+...-| .-.+++ ||+.|+.
T Consensus 4 iLlatl---G~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll--~g~~~~----l~~~y~~ 63 (224)
T PF09623_consen 4 ILLATL---GTSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL--DGGLQR----LCQDYYL 63 (224)
T ss_pred EEEEec---CCCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH--HHHHHH----HHHhhcC
Confidence 678888 77888899999999999999999999888888876644444 112444 9999986
No 138
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=41.41 E-value=14 Score=28.57 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD 57 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke 57 (544)
.+.|.+|+...++... -.-|.-||.-+|..|..+....
T Consensus 2 ~~~C~~C~~~F~~~~r---k~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRR---RHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCcc---ccccCcCcCCcChHHcCCeeec
Confidence 4689999999888542 2679999999999999877653
No 139
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=40.63 E-value=24 Score=27.44 Aligned_cols=29 Identities=21% Similarity=0.597 Sum_probs=23.8
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhHH
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYE 52 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~-FPVCRpCYe 52 (544)
.|.+||-++. .+..-|-.++ +-+|.+||.
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~ 31 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQ 31 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHh
Confidence 6999999974 2667777776 999999997
No 140
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.45 E-value=14 Score=41.29 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=23.4
Q ss_pred CCC-ceeecCCCCCC-cchhhH---HHHHhcCCCCCCCCcccccccCCCCc
Q 009093 32 DGN-PFVACDVCAFP-VCRPCY---EYERKDGNQSCPQCKTRYKKHKGSPA 77 (544)
Q Consensus 32 ~Ge-~FVAC~EC~FP-VCRpCY---eyErkeG~q~CPqCKTrYKR~kgspr 77 (544)
.|- .++.|..||.. .|.-|= .|-.+.+.-.|..|+..+.-..-||.
T Consensus 208 rGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 258 (505)
T TIGR00595 208 RGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQ 258 (505)
T ss_pred CcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCC
Confidence 444 35666666654 355553 22233444456666655555555553
No 141
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=40.38 E-value=18 Score=43.13 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=32.2
Q ss_pred CCCcccccCCCccc--C-CCCCceeecCCCCCCcchhhHHHHH-----------hcCCCCCCCCcccccccCC
Q 009093 16 GGQVCQICGDNVGK--T-VDGNPFVACDVCAFPVCRPCYEYER-----------KDGNQSCPQCKTRYKKHKG 74 (544)
Q Consensus 16 ~gqiCqICGD~VGl--t-~~Ge~FVAC~EC~FPVCRpCYeyEr-----------keG~q~CPqCKTrYKR~kg 74 (544)
....|..||..-.+ . -.| .|++|. +||-|+.=....+ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 45689999864222 2 345 699994 5777742111111 1124689999876654443
No 142
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=39.46 E-value=19 Score=41.07 Aligned_cols=41 Identities=29% Similarity=0.670 Sum_probs=25.0
Q ss_pred CCcccccCCCcccCCCC----------Cceee--cCCCCCCcchhhHHHHHhcC
Q 009093 17 GQVCQICGDNVGKTVDG----------NPFVA--CDVCAFPVCRPCYEYERKDG 58 (544)
Q Consensus 17 gqiCqICGD~VGlt~~G----------e~FVA--C~EC~FPVCRpCYeyErkeG 58 (544)
+.+|.|||.+-.++.+- .-|++ =.-=.||||..||. ....|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~-~l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYK-DVIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHH-HHHHH
Confidence 57999999974433221 12333 11227999999997 44455
No 143
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=39.36 E-value=11 Score=34.25 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=17.5
Q ss_pred eeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 36 FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
-+-|+.|+ ++++..+-.-.||+|+.+
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCC
Confidence 35577776 455655555669999965
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=39.26 E-value=22 Score=41.35 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=7.9
Q ss_pred CCCCCCCcccc
Q 009093 59 NQSCPQCKTRY 69 (544)
Q Consensus 59 ~q~CPqCKTrY 69 (544)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 46888887764
No 145
>PRK08359 transcription factor; Validated
Probab=39.12 E-value=11 Score=37.14 Aligned_cols=30 Identities=37% Similarity=1.050 Sum_probs=19.3
Q ss_pred CcccccCCCcccC-----CCCCceeecCCCCCCcchhhH-HHHH
Q 009093 18 QVCQICGDNVGKT-----VDGNPFVACDVCAFPVCRPCY-EYER 55 (544)
Q Consensus 18 qiCqICGD~VGlt-----~~Ge~FVAC~EC~FPVCRpCY-eyEr 55 (544)
-.|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997422 23432 45788898 6643
No 146
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=38.74 E-value=13 Score=34.17 Aligned_cols=51 Identities=29% Similarity=0.690 Sum_probs=32.8
Q ss_pred CCCcccccCCCcccCCCCC---ceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 16 GGQVCQICGDNVGKTVDGN---PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge---~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.+..|.-||.-..+-.+|. .|.+| +.||.|+.=... +-..+.||+|.-+..
T Consensus 59 ~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~~--~~~~~~cp~c~~~~~ 112 (140)
T COG0551 59 TGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEKP--KPKEKKCPKCGSRKL 112 (140)
T ss_pred CceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeecC--CcccccCCcCCCcee
Confidence 3568989994322222333 79999 799999965433 333355999997443
No 147
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=37.53 E-value=10 Score=30.81 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=14.0
Q ss_pred hcCCCCCCCCccccccc
Q 009093 56 KDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 56 keG~q~CPqCKTrYKR~ 72 (544)
++.--+||.|+++|.|-
T Consensus 18 ~dDiVvCp~CgapyHR~ 34 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRD 34 (54)
T ss_pred CCCEEECCCCCCcccHH
Confidence 56668999999999863
No 148
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=37.46 E-value=9.8 Score=31.39 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=7.6
Q ss_pred CCCCCCCcccccc
Q 009093 59 NQSCPQCKTRYKK 71 (544)
Q Consensus 59 ~q~CPqCKTrYKR 71 (544)
.-+||+||.-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3456666666653
No 149
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=37.39 E-value=47 Score=25.88 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=27.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCC---CcchhhHHHHHh-cCCCCCCCCc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCK 66 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~F---PVCRpCYeyErk-eG~q~CPqCK 66 (544)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=+. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 6999988 344444456678 4542 244567754443 4467899996
No 150
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=37.38 E-value=22 Score=30.17 Aligned_cols=31 Identities=26% Similarity=0.730 Sum_probs=24.4
Q ss_pred cCCCcccccCC--Cccc-CCCCCceeecCCCCCC
Q 009093 15 VGGQVCQICGD--NVGK-TVDGNPFVACDVCAFP 45 (544)
Q Consensus 15 ~~gqiCqICGD--~VGl-t~~Ge~FVAC~EC~FP 45 (544)
..|-+|.-|+. .|.+ .+||...+-|-+|||-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 45779999984 4544 5788889999999984
No 151
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=37.31 E-value=16 Score=30.71 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=16.5
Q ss_pred ceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
.|.||.+|.|-+ + .+.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~-~~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------P-EKTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------C-CCcCCCCCCC
Confidence 467777777766 2 3599999874
No 152
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=36.65 E-value=19 Score=44.71 Aligned_cols=46 Identities=24% Similarity=0.649 Sum_probs=29.8
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCc-----chhhHHHHHh--cCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV-----CRPCYEYERK--DGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPV-----CRpCYeyErk--eG~q~CPqCKTrYK 70 (544)
..|.-||..+-- .-|.+||-+. |..|=.---. .+...||.|+++-.
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 478889886421 2788888664 8888641111 22558999997754
No 153
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=36.52 E-value=20 Score=29.91 Aligned_cols=28 Identities=21% Similarity=0.647 Sum_probs=21.5
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPV 46 (544)
--||.-||-+-.+.. |++ +-|.||||.|
T Consensus 20 iYiCgdC~~en~lk~-~D~-irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLKR-GDV-IRCRECGYRI 47 (62)
T ss_pred EEEeccccccccccC-CCc-EehhhcchHH
Confidence 458999999877754 554 6799999976
No 154
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=36.41 E-value=9.6 Score=25.65 Aligned_cols=12 Identities=42% Similarity=1.030 Sum_probs=5.3
Q ss_pred hcCCCCCCCCcc
Q 009093 56 KDGNQSCPQCKT 67 (544)
Q Consensus 56 keG~q~CPqCKT 67 (544)
.++.+-||+|++
T Consensus 10 ~~~~~fC~~CG~ 21 (23)
T PF13240_consen 10 EDDAKFCPNCGT 21 (23)
T ss_pred CCcCcchhhhCC
Confidence 344444444444
No 155
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=36.16 E-value=11 Score=41.38 Aligned_cols=62 Identities=24% Similarity=0.586 Sum_probs=38.9
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhh-HHHHHhcCCCCCCCCcccc---ccc--CCCCcccCC
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPC-YEYERKDGNQSCPQCKTRY---KKH--KGSPAILGD 81 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpC-YeyErkeG~q~CPqCKTrY---KR~--kgsprV~gd 81 (544)
+-.|..||+-+|+...-=--.+| .--.=--| |||=-++|.+.||.|+.-- +|. -|||-|+.+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpC---sHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese 432 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPC---SHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE 432 (518)
T ss_pred hhhhhhhhhhhcCCcccccccch---hHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc
Confidence 45799999999998533223444 21111123 5566789999999998322 322 367777764
No 156
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=36.04 E-value=10 Score=25.91 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=9.9
Q ss_pred HHhcCCCCCCCCccc
Q 009093 54 ERKDGNQSCPQCKTR 68 (544)
Q Consensus 54 ErkeG~q~CPqCKTr 68 (544)
+...+...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 345666777777764
No 157
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=35.82 E-value=53 Score=37.39 Aligned_cols=53 Identities=23% Similarity=0.136 Sum_probs=41.8
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCC-CceEEEcCC-----CcchhhHHHH
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVD-KVSCYVSDD-----GAAMLTFEAL 402 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~d-KlsVYVsDD-----Ggs~ltf~al 402 (544)
.++.+=.+||+| +|..+-+..|+=|+...+||.. ||=+.|+|- |...-|-+-+
T Consensus 23 ~~~~~i~~v~cy---~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~ 81 (527)
T PF03142_consen 23 PDKFVICLVPCY---SEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIV 81 (527)
T ss_pred CCceEEEEEccc---cCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHH
Confidence 356677899999 9999999999999999999995 777777773 4455555433
No 158
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=35.76 E-value=27 Score=38.10 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=23.4
Q ss_pred ceeecCCCCCCcchhhHHHHHhc-CCCCCCCCcccccccC
Q 009093 35 PFVACDVCAFPVCRPCYEYERKD-GNQSCPQCKTRYKKHK 73 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErke-G~q~CPqCKTrYKR~k 73 (544)
..++|++|+.-+=+| ..+. +.-.||+|++.-.|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 368899998765333 1222 3357999999987664
No 159
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.47 E-value=34 Score=36.34 Aligned_cols=44 Identities=23% Similarity=0.638 Sum_probs=28.7
Q ss_pred CCCcccccCCC--cc-----cCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 16 GGQVCQICGDN--VG-----KTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 16 ~gqiCqICGD~--VG-----lt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
+-+.|.+||.. ++ -+.+|.-+.-|.-|++ |..-..-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 34599999987 11 1257888999987764 333334566666653
No 160
>PTZ00293 thymidine kinase; Provisional
Probab=35.43 E-value=17 Score=36.59 Aligned_cols=35 Identities=20% Similarity=0.572 Sum_probs=22.2
Q ss_pred CcccccCCCccc----CCCCCc-eeecCCCCCCcchhhHH
Q 009093 18 QVCQICGDNVGK----TVDGNP-FVACDVCAFPVCRPCYE 52 (544)
Q Consensus 18 qiCqICGD~VGl----t~~Ge~-FVAC~EC~FPVCRpCYe 52 (544)
.+|..||.+--. .++|+. -+-=+|=--++||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988433 234443 22223445789999995
No 161
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=35.37 E-value=18 Score=36.60 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.5
Q ss_pred CCceeeecccCCCCCCcccccchhhhhcc
Q 009093 515 LPRLVYVSREKRPGFQHHKKAGAMNALVS 543 (544)
Q Consensus 515 lP~LVYvSREKRP~~~Hh~KAGAmNaL~R 543 (544)
.++++|+.|++++| +|||++|.+++
T Consensus 66 ~~~v~~~~r~~~~g----~Kag~l~~~~~ 90 (254)
T cd04191 66 QGRIYYRRRRENTG----RKAGNIADFCR 90 (254)
T ss_pred CCcEEEEEcCCCCC----ccHHHHHHHHH
Confidence 57899999999875 59999998764
No 162
>PRK07726 DNA topoisomerase III; Provisional
Probab=35.14 E-value=26 Score=40.43 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=30.1
Q ss_pred CCcccccCCCccc--CCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcc
Q 009093 17 GQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (544)
Q Consensus 17 gqiCqICGD~VGl--t~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKT 67 (544)
...|.-||..+-. ...| -|..|.. |+.|+.+. ..++.++.||-|+.
T Consensus 610 ~~~CP~C~~~~~~~~~~~~-~f~~Cs~--~~~~~~~~--~~~~~~~~~~~~~~ 657 (658)
T PRK07726 610 GPKCPDCGKPMLKVKGKNG-KMLVCQD--RECGKRKN--VSKKTNARCPNCKK 657 (658)
T ss_pred cccccccCccceeecccCC-eeEecCC--Cccccccc--cccccCCCCCccCC
Confidence 4579999987532 2344 5899977 77665522 11344678999975
No 163
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.96 E-value=33 Score=34.19 Aligned_cols=47 Identities=30% Similarity=0.719 Sum_probs=37.4
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
.---|.||-|.+--. +-|+= +||---|+.|-+..+|.+ ..||-|+.+
T Consensus 130 ~~~~CPiCl~~~sek----~~vsT-kCGHvFC~~Cik~alk~~-~~CP~C~kk 176 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK----VPVST-KCGHVFCSQCIKDALKNT-NKCPTCRKK 176 (187)
T ss_pred cccCCCceecchhhc----ccccc-ccchhHHHHHHHHHHHhC-CCCCCcccc
Confidence 336899999886543 33554 899999999999999988 789999873
No 164
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=34.94 E-value=53 Score=27.31 Aligned_cols=50 Identities=24% Similarity=0.528 Sum_probs=36.2
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCC-CCCCCCcc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCKT 67 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~-q~CPqCKT 67 (544)
...+|..||-.|--.+.+ +-.+|.+||=-+-.=|+. -|+-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~~-CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCEK-CRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeechh-HHhcCCceECCCCCC
Confidence 345899999998666555 455799999874555774 667666 57999973
No 165
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=34.89 E-value=21 Score=35.94 Aligned_cols=26 Identities=31% Similarity=0.741 Sum_probs=16.0
Q ss_pred cccccCC-Cc---ccCC-CCCceeecCCCCC
Q 009093 19 VCQICGD-NV---GKTV-DGNPFVACDVCAF 44 (544)
Q Consensus 19 iCqICGD-~V---Glt~-~Ge~FVAC~EC~F 44 (544)
.|..||+ ++ -+.+ -+++.|-|+|||.
T Consensus 8 ~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~ 38 (201)
T COG1326 8 ECPSCGSEEVSHEVIKERGREPLVRCEECGT 38 (201)
T ss_pred ECCCCCcchhhHHHHHhcCCceEEEccCCCc
Confidence 6889993 33 1233 3446777888764
No 166
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.51 E-value=15 Score=25.48 Aligned_cols=23 Identities=26% Similarity=0.795 Sum_probs=14.1
Q ss_pred chhhHHHHHhcCCCCCCCCccccc
Q 009093 47 CRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 47 CRpCYeyErkeG~q~CPqCKTrYK 70 (544)
|-.|.. ++....+.||.|+-.|.
T Consensus 3 CP~C~~-~V~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 3 CPECGA-EVPESAKFCPHCGYDFE 25 (26)
T ss_pred CCCCcC-CchhhcCcCCCCCCCCc
Confidence 444443 45667777888876653
No 167
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=34.49 E-value=13 Score=44.26 Aligned_cols=43 Identities=28% Similarity=0.762 Sum_probs=0.0
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCC-----cchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-----VCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FP-----VCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-.|.-||.. -.+.-|.+||-+ +|+-|-. +..+ ..||.|++.-.
T Consensus 656 r~Cp~Cg~~-------t~~~~Cp~CG~~T~~~~~Cp~C~~-~~~~--~~C~~C~~~~~ 703 (900)
T PF03833_consen 656 RRCPKCGKE-------TFYNRCPECGSHTEPVYVCPDCGI-EVEE--DECPKCGRETT 703 (900)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCcccCCc-------chhhcCcccCCccccceecccccc-ccCc--cccccccccCc
Confidence 368788765 356678888776 6888874 3333 38888887654
No 168
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=34.39 E-value=20 Score=42.22 Aligned_cols=47 Identities=34% Similarity=0.690 Sum_probs=31.6
Q ss_pred cCCC-cccCCCCCc-eeecCCC--CCCcchhhHHHHHhcC--------CCCCCCCcccccccCCC
Q 009093 23 CGDN-VGKTVDGNP-FVACDVC--AFPVCRPCYEYERKDG--------NQSCPQCKTRYKKHKGS 75 (544)
Q Consensus 23 CGD~-VGlt~~Ge~-FVAC~EC--~FPVCRpCYeyErkeG--------~q~CPqCKTrYKR~kgs 75 (544)
|||. +.+|.++-+ -.-|.|| ||. |..-.||- ---||+||.||- |-||
T Consensus 266 g~dqa~sltqsa~lRKFKCtECgKAFK-----fKHHLKEHlRIHSGEKPfeCpnCkKRFS-HSGS 324 (1007)
T KOG3623|consen 266 GGDQAISLTQSALLRKFKCTECGKAFK-----FKHHLKEHLRIHSGEKPFECPNCKKRFS-HSGS 324 (1007)
T ss_pred CCcccccccchhhhccccccccchhhh-----hHHHHHhhheeecCCCCcCCcccccccc-cCCc
Confidence 7777 888876554 5679999 565 44444432 235999999994 4443
No 169
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=34.30 E-value=88 Score=33.58 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=38.5
Q ss_pred cccEEeccCCCCCCChH---hHHHHHHHhhcCCCCC---CCceEEEcCCCcchhhHHHHHHHHHHHHhhHHHHHHcCCC
Q 009093 350 AVDIFVSTVDPLKEPPL---VTANTVLSILAVDYPV---DKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIE 422 (544)
Q Consensus 350 ~VDVFI~TyDP~nEPp~---vv~nTVLSaLA~DYP~---dKlsVYVsDDGgs~ltf~al~Eaa~FAr~WvPFCkk~~Ie 422 (544)
..-|.||.| ||+-- ++-.||-. |.=.|-. =...+.|+|||....|.+...+ ||+|+|.+
T Consensus 68 ~lsVIVpay---nE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k----------~s~K~~~d 132 (323)
T KOG2977|consen 68 YLSVIVPAY---NEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVEVALK----------FSRKLGDD 132 (323)
T ss_pred eeEEEEecC---CcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHHHHHH----------HHHHcCcc
Confidence 677999999 88743 33333332 2223333 2567899999999888765433 88888843
No 170
>PRK05582 DNA topoisomerase I; Validated
Probab=34.25 E-value=26 Score=40.40 Aligned_cols=51 Identities=31% Similarity=0.679 Sum_probs=30.4
Q ss_pred CCcccccCCCcccC--CCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 17 gqiCqICGD~VGlt--~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
...|..||..+-.. ..| .|..|. +||-|+.... ..+..++.||.|+.....
T Consensus 571 ~~~CP~Cg~~l~~~~~k~g-kf~~Cs--~~~~C~~~~~-~~~~~~~~CP~C~~~l~l 623 (650)
T PRK05582 571 GEDCPKCGSPMVIKMGRYG-KFIACS--NFPDCRNTKP-IVKEIGVKCPKCGGQIVE 623 (650)
T ss_pred CCCCCCCCCEeEEEecCCC-ceeecC--CccccccCCC-cccccCCCCCCCCCceEE
Confidence 35799998764321 234 699996 4444542211 112446889999876543
No 171
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.02 E-value=15 Score=33.43 Aligned_cols=29 Identities=14% Similarity=0.470 Sum_probs=16.5
Q ss_pred eeecCCCCCCcchhhHHHHHhcCC-CCCCCCcccccc
Q 009093 36 FVACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYKK 71 (544)
Q Consensus 36 FVAC~EC~FPVCRpCYeyErkeG~-q~CPqCKTrYKR 71 (544)
-+-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 71 ~~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 71 ELECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 34466666 333443322 359999987543
No 172
>PRK10220 hypothetical protein; Provisional
Probab=33.78 E-value=33 Score=31.71 Aligned_cols=25 Identities=32% Similarity=0.879 Sum_probs=14.7
Q ss_pred CcchhhHHHHHhcCCCCCCCCccccc
Q 009093 45 PVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
|-|..=|-||-.+ .-+||.|.--..
T Consensus 7 P~C~seytY~d~~-~~vCpeC~hEW~ 31 (111)
T PRK10220 7 PKCNSEYTYEDNG-MYICPECAHEWN 31 (111)
T ss_pred CCCCCcceEcCCC-eEECCcccCcCC
Confidence 4444446666433 367888876654
No 173
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=33.41 E-value=40 Score=35.91 Aligned_cols=29 Identities=28% Similarity=0.762 Sum_probs=21.7
Q ss_pred CCCcccccCCC--cc----cCCCCCceeecCCCCC
Q 009093 16 GGQVCQICGDN--VG----KTVDGNPFVACDVCAF 44 (544)
Q Consensus 16 ~gqiCqICGD~--VG----lt~~Ge~FVAC~EC~F 44 (544)
..+.|.+||.. ++ -+.+|.-+.-|.-|++
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~t 220 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCES 220 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCC
Confidence 45799999988 22 1347888999988865
No 174
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=33.30 E-value=31 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.844 Sum_probs=21.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpC 50 (544)
.|.+|+.++. |..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKID----GFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcC----CCEeEEeCCCCCeEcCcc
Confidence 5899987743 333888999999887655
No 175
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=29 Score=40.79 Aligned_cols=62 Identities=27% Similarity=0.776 Sum_probs=43.3
Q ss_pred cCCCcccccCCCcccCCCCC---ceeecCCCC--------------------CCcchhhHH-HH----Hh--cCCCCCCC
Q 009093 15 VGGQVCQICGDNVGKTVDGN---PFVACDVCA--------------------FPVCRPCYE-YE----RK--DGNQSCPQ 64 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge---~FVAC~EC~--------------------FPVCRpCYe-yE----rk--eG~q~CPq 64 (544)
....+|.-|=.++---.+=- +|..|..|| ||.|-.|-. |+ |+ --.-+||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 34568999998865433322 699999995 999999975 33 22 22369999
Q ss_pred Ccccc--cccCCCC
Q 009093 65 CKTRY--KKHKGSP 76 (544)
Q Consensus 65 CKTrY--KR~kgsp 76 (544)
|+-.| ++++|--
T Consensus 179 CGP~~~l~~~~g~~ 192 (750)
T COG0068 179 CGPHLFLVNHDGEA 192 (750)
T ss_pred cCCCeEEEcCCCcc
Confidence 99755 5666654
No 176
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=32.79 E-value=38 Score=23.41 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=13.6
Q ss_pred ccccCCCcccCCCCCceeecCCCCC
Q 009093 20 CQICGDNVGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC~F 44 (544)
|..||-.|--.+.|-.| .|..|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55666665444444444 4777776
No 177
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.69 E-value=42 Score=29.19 Aligned_cols=48 Identities=21% Similarity=0.547 Sum_probs=31.6
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
-|.-|+.++--+.+ +-.+-=-||-| |..|-|.. -+ +.||.|+--+-+.
T Consensus 7 nCECCDrDLpp~s~-dA~ICtfEcTF--CadCae~~--l~-g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDST-DARICTFECTF--CADCAENR--LH-GLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCC-ceeEEEEeeeh--hHhHHHHh--hc-CcCCCCCchhhcC
Confidence 58889988766543 33332237776 99998632 22 6899998766543
No 178
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=32.32 E-value=31 Score=31.80 Aligned_cols=25 Identities=28% Similarity=0.786 Sum_probs=14.2
Q ss_pred CcchhhHHHHHhcCCCCCCCCccccc
Q 009093 45 PVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
|-|..=|-||-.+ .-+||.|.--.-
T Consensus 6 P~C~seytY~dg~-~~iCpeC~~EW~ 30 (109)
T TIGR00686 6 PKCNSEYTYHDGT-QLICPSCLYEWN 30 (109)
T ss_pred CcCCCcceEecCC-eeECcccccccc
Confidence 3444445566433 367888876554
No 179
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=31 Score=36.54 Aligned_cols=48 Identities=21% Similarity=0.632 Sum_probs=38.0
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.+..-|-+|=+..-- -.|-.||---|-.|-. |--...+.||.|++.++
T Consensus 237 ~a~~kC~LCLe~~~~-------pSaTpCGHiFCWsCI~-~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN-------PSATPCGHIFCWSCIL-EWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCC-------CCcCcCcchHHHHHHH-HHHccccCCCcccccCC
Confidence 344689999877422 5688999999999995 76666788999999886
No 180
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=18 Score=38.95 Aligned_cols=60 Identities=22% Similarity=0.481 Sum_probs=41.4
Q ss_pred cCCCcccccCCCcccCCCCCc--eeecCCCCCCcchhhHHHHHhcC------CCCCCCCcccccccCCC
Q 009093 15 VGGQVCQICGDNVGKTVDGNP--FVACDVCAFPVCRPCYEYERKDG------NQSCPQCKTRYKKHKGS 75 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~--FVAC~EC~FPVCRpCYeyErkeG------~q~CPqCKTrYKR~kgs 75 (544)
..-..|-||.+.|.-.. +-. |--=..|..--|--|+--.|.-. ++.||+|++.-+..--|
T Consensus 159 s~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 34458999999988776 321 32223466678899997666322 48999999998866433
No 181
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.52 E-value=21 Score=26.35 Aligned_cols=10 Identities=50% Similarity=1.640 Sum_probs=9.2
Q ss_pred CCCCCccccc
Q 009093 61 SCPQCKTRYK 70 (544)
Q Consensus 61 ~CPqCKTrYK 70 (544)
.||.|.|.|+
T Consensus 4 ~CP~C~~~f~ 13 (37)
T PF13719_consen 4 TCPNCQTRFR 13 (37)
T ss_pred ECCCCCceEE
Confidence 5999999997
No 182
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=31.42 E-value=20 Score=31.62 Aligned_cols=41 Identities=24% Similarity=0.562 Sum_probs=25.2
Q ss_pred ccccCCCcccC-CCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 20 CQICGDNVGKT-VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 20 CqICGD~VGlt-~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
|.+||...... ..-+.|.-+ .+.+-|..|++ .||+|+..|=
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~~ 42 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEELL 42 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEEE
Confidence 89999654433 333345555 35555544544 5999998874
No 183
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.19 E-value=18 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=16.9
Q ss_pred eecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-|+.|+ ++++..+-.-.||+|+.+--
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCc
Confidence 4466666 33444444567999997653
No 184
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=30.99 E-value=23 Score=38.84 Aligned_cols=33 Identities=27% Similarity=0.660 Sum_probs=23.1
Q ss_pred eecCCCCCCcchhhHHHHHhcC-CCCCCCCcccccccC
Q 009093 37 VACDVCAFPVCRPCYEYERKDG-NQSCPQCKTRYKKHK 73 (544)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG-~q~CPqCKTrYKR~k 73 (544)
++|++|+.-+..|= .+.| ...||+|++.-.|++
T Consensus 11 ~~C~~Cd~l~~~~~----l~~g~~a~CpRCg~~L~~~~ 44 (419)
T PRK15103 11 ILCPQCDMLVALPR----LEHGQKAACPRCGTTLTVRW 44 (419)
T ss_pred ccCCCCCceeecCC----CCCCCeeECCCCCCCCcCCC
Confidence 78999998765442 2233 356999999987654
No 185
>PRK07219 DNA topoisomerase I; Validated
Probab=30.95 E-value=29 Score=41.16 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=31.2
Q ss_pred CcccccCCCccc--CCCCCceeecCCCCCCcchhhHHHHHh----cCCCCCCCCcccc
Q 009093 18 QVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRY 69 (544)
Q Consensus 18 qiCqICGD~VGl--t~~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCKTrY 69 (544)
..|.-||..+.+ ..+|..|+.|. +||-|+.-+....+ --+..||.|+.+-
T Consensus 603 ~~CP~Cg~~l~~r~~~~g~~F~gCs--~yp~C~~t~~lp~~~~~~~~~~~Cp~CG~~l 658 (822)
T PRK07219 603 GKCPECGGDLIIIRTDKGSRFVGCS--GYPDCRNTFPLPSTGRIKVLDEVCEKCGLPV 658 (822)
T ss_pred CcCCCCCCcceeeeccCCceeeecC--CCcCCCCeeecCCCCccccccCCCCCCCcce
Confidence 479999987542 34565799994 67777754432211 1146788886544
No 186
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.44 E-value=22 Score=26.17 Aligned_cols=10 Identities=40% Similarity=1.550 Sum_probs=9.2
Q ss_pred CCCCCccccc
Q 009093 61 SCPQCKTRYK 70 (544)
Q Consensus 61 ~CPqCKTrYK 70 (544)
.||+|++.|.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5999999997
No 187
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=29.52 E-value=25 Score=32.41 Aligned_cols=18 Identities=33% Similarity=0.990 Sum_probs=10.9
Q ss_pred ccccCCCcccCCCCCceeecCCC
Q 009093 20 CQICGDNVGKTVDGNPFVACDVC 42 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC 42 (544)
|.+||.++-+|. +.|..|
T Consensus 1 CPvCg~~l~vt~-----l~C~~C 18 (113)
T PF09862_consen 1 CPVCGGELVVTR-----LKCPSC 18 (113)
T ss_pred CCCCCCceEEEE-----EEcCCC
Confidence 677777766553 455555
No 188
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=29.41 E-value=26 Score=41.04 Aligned_cols=56 Identities=30% Similarity=0.738 Sum_probs=41.1
Q ss_pred cCCCcccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhHHHHHhc--------CCCCCC
Q 009093 15 VGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCYEYERKD--------GNQSCP 63 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~---Ge~FVAC~EC~--------------------FPVCRpCYeyErke--------G~q~CP 63 (544)
.+-.+|.-|-.++---.| +=+|.-|..|| |++|..|.. |.++ ---+||
T Consensus 66 pD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~-ey~~p~~rr~h~~~~~C~ 144 (711)
T TIGR00143 66 ADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAK-EYKDPLDRRFHAQPIACP 144 (711)
T ss_pred CchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHH-HhcCCccccCCCCCccCC
Confidence 455699999999833222 45899999994 999999985 4322 235899
Q ss_pred CCcccccc
Q 009093 64 QCKTRYKK 71 (544)
Q Consensus 64 qCKTrYKR 71 (544)
.|+=++.-
T Consensus 145 ~Cgp~l~l 152 (711)
T TIGR00143 145 RCGPQLNF 152 (711)
T ss_pred CCCcEEEE
Confidence 99998853
No 189
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=29.41 E-value=54 Score=24.85 Aligned_cols=26 Identities=19% Similarity=0.576 Sum_probs=13.5
Q ss_pred cccccCCCcccCCCCC-ceeecCCCCC
Q 009093 19 VCQICGDNVGKTVDGN-PFVACDVCAF 44 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge-~FVAC~EC~F 44 (544)
.|.-||.-+-..++.+ .+..|..|+|
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~ 28 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGY 28 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCC
Confidence 5777776544443211 2445666664
No 190
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=29.39 E-value=55 Score=40.08 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhcCCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCCCCCCCCCceeeeccc
Q 009093 446 VKDRRAMKREYEEFKIRINGLVA-KAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSRE 524 (544)
Q Consensus 446 ~~e~~~~KreYee~k~RI~~l~~-~~~kvp~~~~~m~dg~~W~~~~~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSRE 524 (544)
..||..|||+|.++-.||+...- ++++- ..++.+..=|-.+.
T Consensus 1067 ~eEr~~~KrltL~~~er~e~e~~~~~l~~-------------------------------------~~~r~~~~~~~~~~ 1109 (1128)
T KOG2051|consen 1067 IEERKRVKRLTLNINERIEEEDYTKSLKK-------------------------------------TQSRILQGSTKVKF 1109 (1128)
T ss_pred HHhHHHHHHHHhhhchhHHHHHHHHhccc-------------------------------------chhcccCCCCccCc
Confidence 56999999999999999987642 11100 01122333344678
Q ss_pred CCCCCCcccccch
Q 009093 525 KRPGFQHHKKAGA 537 (544)
Q Consensus 525 KRP~~~Hh~KAGA 537 (544)
-||.|+|+++||-
T Consensus 1110 ~r~~f~~~~g~~~ 1122 (1128)
T KOG2051|consen 1110 VRPRFEHPKGAGT 1122 (1128)
T ss_pred cCcccccccCCCc
Confidence 8999999999984
No 191
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.10 E-value=33 Score=25.47 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=19.8
Q ss_pred CCCc--ccccCCCcccCCCCCceeecCCCCC
Q 009093 16 GGQV--CQICGDNVGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 16 ~gqi--CqICGD~VGlt~~Ge~FVAC~EC~F 44 (544)
.+.. |.+||.......||- .-|.+||.
T Consensus 5 ~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 5 RGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred ccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 4555 999999988887775 55777764
No 192
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.83 E-value=17 Score=32.94 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=16.2
Q ss_pred eecCCCCCCcchhhHHHHHhcCC-CCCCCCccccc
Q 009093 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYK 70 (544)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~-q~CPqCKTrYK 70 (544)
.-|+.|+. .++..+.. -.||+|+..--
T Consensus 71 ~~C~~Cg~-------~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQQ-------YVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCCC-------eeecCCccCCcCcCcCCCCc
Confidence 44777762 34444333 55999997643
No 193
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=28.75 E-value=47 Score=24.82 Aligned_cols=28 Identities=29% Similarity=0.875 Sum_probs=19.5
Q ss_pred CcccccCCCcccC--CCCCceeecCCCCCCcch
Q 009093 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCR 48 (544)
Q Consensus 18 qiCqICGD~VGlt--~~Ge~FVAC~EC~FPVCR 48 (544)
..|..||..+-+. ..| .|.+|. +||-|+
T Consensus 2 ~~CP~Cg~~lv~r~~k~g-~F~~Cs--~yP~C~ 31 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKG-KFLGCS--NYPECK 31 (39)
T ss_pred cCCCCCCceeEEEECCCC-CEEECC--CCCCcC
Confidence 4799999774333 356 999995 566665
No 194
>PRK05580 primosome assembly protein PriA; Validated
Probab=28.47 E-value=26 Score=40.52 Aligned_cols=49 Identities=24% Similarity=0.535 Sum_probs=30.0
Q ss_pred cCCCCC-ceeecCCCCCCc-chhhHHHH---HhcCCCCCCCCcccccccCCCCc
Q 009093 29 KTVDGN-PFVACDVCAFPV-CRPCYEYE---RKDGNQSCPQCKTRYKKHKGSPA 77 (544)
Q Consensus 29 lt~~Ge-~FVAC~EC~FPV-CRpCYeyE---rkeG~q~CPqCKTrYKR~kgspr 77 (544)
++-+|- .|+.|..|++.+ |.-|-..= ...+.-.|..|+..+.-..=||.
T Consensus 373 ~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 426 (679)
T PRK05580 373 LNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPE 426 (679)
T ss_pred EcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCC
Confidence 344565 488888888774 77775321 23333467777777665555654
No 195
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.18 E-value=23 Score=32.99 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=8.3
Q ss_pred CCCCCCCCccc
Q 009093 58 GNQSCPQCKTR 68 (544)
Q Consensus 58 G~q~CPqCKTr 68 (544)
..-.||+|+.+
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 44569999976
No 196
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=28.02 E-value=29 Score=33.94 Aligned_cols=31 Identities=29% Similarity=0.777 Sum_probs=22.6
Q ss_pred CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 32 DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 32 ~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
+|. .--|.+|||.+ +. +--..||-|+.+...
T Consensus 131 ~~~-~~vC~vCGy~~-------~g-e~P~~CPiCga~k~~ 161 (166)
T COG1592 131 EGK-VWVCPVCGYTH-------EG-EAPEVCPICGAPKEK 161 (166)
T ss_pred cCC-EEEcCCCCCcc-------cC-CCCCcCCCCCChHHH
Confidence 344 55699998863 44 667899999988754
No 197
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=27.79 E-value=97 Score=31.59 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=42.9
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Ea 405 (544)
|.|=+.|.|| -+...+.+++-+..+..||.+. +++.|+|.+..+.+.+.+.
T Consensus 3 ~~i~~iiv~y----n~~~~l~~~l~~l~~~~~~~~~--iv~vDn~s~d~~~~~~~~~ 53 (305)
T COG1216 3 PKISIIIVTY----NRGEDLVECLASLAAQTYPDDV--IVVVDNGSTDGSLEALKAR 53 (305)
T ss_pred cceEEEEEec----CCHHHHHHHHHHHhcCCCCCcE--EEEccCCCCCCCHHHHHhh
Confidence 5677889999 5667899999999999999843 3389999999999888775
No 198
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.73 E-value=39 Score=36.91 Aligned_cols=50 Identities=26% Similarity=0.589 Sum_probs=35.3
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh-cCCCCCCCCccccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQCKTRYKKH 72 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk-eG~q~CPqCKTrYKR~ 72 (544)
..++|+||...+- .++---|+-.+|.-|----|. --...||=|+|.-...
T Consensus 60 en~~C~ICA~~~T-------Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 60 ENMNCQICAGSTT-------YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccceeEEecCCce-------EEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 4589999987643 455556788999999743332 3347899999988643
No 199
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=27.39 E-value=32 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.791 Sum_probs=14.7
Q ss_pred cccccCCCcccC-C--CCCceeecCCCCC
Q 009093 19 VCQICGDNVGKT-V--DGNPFVACDVCAF 44 (544)
Q Consensus 19 iCqICGD~VGlt-~--~Ge~FVAC~EC~F 44 (544)
.|..||..+.+. . |+..-..|..|+|
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCC
Confidence 599999998776 3 4446778888876
No 200
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.19 E-value=58 Score=32.23 Aligned_cols=49 Identities=27% Similarity=0.715 Sum_probs=31.5
Q ss_pred ccCCCcccccCCC-cccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 14 NVGGQVCQICGDN-VGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 14 ~~~gqiCqICGD~-VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
...|.+|++|.++ |-.-=+=+..+-|.+|+---=+.|+. . +.||.|.-+
T Consensus 149 ~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~-~~CpkC~R~ 198 (202)
T PF13901_consen 149 QQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----K-KSCPKCARR 198 (202)
T ss_pred HhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----C-CCCCCcHhH
Confidence 3568999999865 33221224557797776555566664 2 679999654
No 201
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=27.06 E-value=52 Score=38.29 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=18.4
Q ss_pred ceeeecccCCCCCCcccccchhhhhcc
Q 009093 517 RLVYVSREKRPGFQHHKKAGAMNALVS 543 (544)
Q Consensus 517 ~LVYvSREKRP~~~Hh~KAGAmNaL~R 543 (544)
.+.|+.|+++ +|.||||+|..++
T Consensus 203 ~v~yi~r~~n----~~~KAgnLN~al~ 225 (713)
T TIGR03030 203 GVNYITRPRN----VHAKAGNINNALK 225 (713)
T ss_pred CcEEEECCCC----CCCChHHHHHHHH
Confidence 5789998875 5689999998664
No 202
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=26.91 E-value=28 Score=32.93 Aligned_cols=27 Identities=41% Similarity=0.829 Sum_probs=21.5
Q ss_pred eecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-.|..||-|.=| |+|.-.||-|.++..
T Consensus 29 ~hCp~Cg~PLF~-------KdG~v~CPvC~~~~~ 55 (131)
T COG1645 29 KHCPKCGTPLFR-------KDGEVFCPVCGYREV 55 (131)
T ss_pred hhCcccCCccee-------eCCeEECCCCCceEE
Confidence 358899988743 899999999997554
No 203
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.89 E-value=26 Score=29.34 Aligned_cols=16 Identities=44% Similarity=1.122 Sum_probs=14.1
Q ss_pred HhcCCCCCCCCccccc
Q 009093 55 RKDGNQSCPQCKTRYK 70 (544)
Q Consensus 55 rkeG~q~CPqCKTrYK 70 (544)
-++|.-.||=|.|+|+
T Consensus 44 g~~gev~CPYC~t~y~ 59 (62)
T COG4391 44 GDEGEVVCPYCSTRYR 59 (62)
T ss_pred CCCCcEecCccccEEE
Confidence 4688899999999997
No 204
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=26.78 E-value=42 Score=25.49 Aligned_cols=28 Identities=32% Similarity=0.943 Sum_probs=22.6
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhHH
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC-~FPVCRpCYe 52 (544)
.|..|+..+ | ....|.+| .|-+|-.||.
T Consensus 2 ~C~~C~~~~-----~-~r~~C~~C~dfDLC~~C~~ 30 (41)
T cd02337 2 TCNECKHHV-----E-TRWHCTVCEDYDLCITCYN 30 (41)
T ss_pred cCCCCCCcC-----C-CceECCCCcchhhHHHHhC
Confidence 588886622 3 88999999 8999999995
No 205
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=26.56 E-value=34 Score=40.39 Aligned_cols=44 Identities=32% Similarity=0.739 Sum_probs=0.0
Q ss_pred ccccCCCcccCCCCCceeecCCC----------CCCcchhhHHHHHhcCCCCCCCCcccccccCCC
Q 009093 20 CQICGDNVGKTVDGNPFVACDVC----------AFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGS 75 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC----------~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgs 75 (544)
|+-||.- .-|..| +-..|+-|= |. ..--+.||+|+..+-+..|.
T Consensus 438 C~~Cg~v----------~~Cp~Cd~~lt~H~~~~~L~CH~Cg-~~-~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 438 CRDCGYI----------AECPNCDSPLTLHKATGQLRCHYCG-YQ-EPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred cccCCCc----------ccCCCCCcceEEecCCCeeEeCCCC-CC-CCCCCCCCCCCCCeeEEecc
No 206
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=26.44 E-value=20 Score=26.97 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=13.1
Q ss_pred CcccccCCCcccCCCCCceeec
Q 009093 18 QVCQICGDNVGKTVDGNPFVAC 39 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC 39 (544)
-.|.+||.-|.+..+|..-+.|
T Consensus 7 YkC~~CGniVev~~~g~g~lvC 28 (36)
T PF06397_consen 7 YKCEHCGNIVEVVHDGGGPLVC 28 (36)
T ss_dssp EE-TTT--EEEEEE--SS-EEE
T ss_pred EEccCCCCEEEEEECCCCCEEe
Confidence 3799999999999888865666
No 207
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=26.35 E-value=39 Score=33.93 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=28.0
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh-------cCCCCCCCCcccccccCCCC
Q 009093 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-------DGNQSCPQCKTRYKKHKGSP 76 (544)
Q Consensus 20 CqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk-------eG~q~CPqCKTrYKR~kgsp 76 (544)
|..||..+....+ -+|..||--+.. -.-..||+|+.-+.+ |.+
T Consensus 1 C~~CG~~~~~~~~------------~lC~~C~~~~~~i~ei~~~i~v~~C~~Cg~~~~~--~~W 50 (236)
T PF04981_consen 1 CPRCGREIEPLID------------GLCPDCYLKRFDIIEIPDRIEVTICPKCGRYRIG--GRW 50 (236)
T ss_pred CCCCCCCCCCccc------------ccChHHhcccCCeeecCCccCceECCCCCCEECC--CEe
Confidence 8889987655444 378888853311 133689999987764 544
No 208
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=25.66 E-value=1.3e+02 Score=36.30 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccceecccchhhhhhhh
Q 009093 298 IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSL 337 (544)
Q Consensus 298 ~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~drL~~ 337 (544)
.|+|++++++ +.+++.|+|--+.+|++-.|.-...||..
T Consensus 45 ~~~~~~~l~~-~~~~~~~~l~~~~rfr~P~~~ea~~Rle~ 83 (851)
T TIGR02302 45 FWLHIAGLVL-FAALALVALIPAIRFRWPSRDEALARLER 83 (851)
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 5778776666 44444443344455655555555555543
No 209
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=25.61 E-value=30 Score=38.01 Aligned_cols=26 Identities=38% Similarity=0.984 Sum_probs=17.3
Q ss_pred CCcccccCCCcccCCCCCceeecCCC-CC
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVC-AF 44 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC-~F 44 (544)
.-+|.||||.--=+-=|- ++|+-| ||
T Consensus 19 ~~~CaICGDkaTGKHYGA--~SCdGCKGF 45 (432)
T KOG4215|consen 19 AEFCAICGDKATGKHYGA--ISCDGCKGF 45 (432)
T ss_pred cchhheeCCcccccccce--eecCcchHH
Confidence 459999999832222233 789999 44
No 210
>PHA02565 49 recombination endonuclease VII; Provisional
Probab=25.60 E-value=55 Score=31.94 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=18.7
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCC
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVC 42 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC 42 (544)
..-+..|.|||..+.-+..+...--||+|
T Consensus 17 e~Q~G~CaiC~~~l~~~~~~~~vDHDH~l 45 (157)
T PHA02565 17 EAQNGICPLCKRELDGDVSKNHLDHDHEL 45 (157)
T ss_pred HHhCCcCCCCCCccCCCccccccCCCCCC
Confidence 34467999999885433444545567855
No 211
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=25.57 E-value=42 Score=33.86 Aligned_cols=58 Identities=24% Similarity=0.500 Sum_probs=42.9
Q ss_pred CCcccccCCCcccCCCCCceeecCCC-CCCc--chhhHHHHHh-cCCCCCCCCcccccccCCC
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVC-AFPV--CRPCYEYERK-DGNQSCPQCKTRYKKHKGS 75 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC-~FPV--CRpCYeyErk-eG~q~CPqCKTrYKR~kgs 75 (544)
+.+|.||.++..-...+.+-++| .| |.+. =|.|.+-... -|+-.|..|+..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 45899999987765444678889 77 3332 5889987765 4779999999999876443
No 212
>PRK06599 DNA topoisomerase I; Validated
Probab=25.49 E-value=48 Score=38.42 Aligned_cols=23 Identities=26% Similarity=0.742 Sum_probs=14.1
Q ss_pred CCcccccCC-Cccc-C-CCCCceeecC
Q 009093 17 GQVCQICGD-NVGK-T-VDGNPFVACD 40 (544)
Q Consensus 17 gqiCqICGD-~VGl-t-~~Ge~FVAC~ 40 (544)
...|.-||. ++-+ . ..| .|+.|.
T Consensus 585 ~~~CP~C~~~~l~~k~~k~g-~F~~Cs 610 (675)
T PRK06599 585 DETCPKCGGGPLVLKLGKNG-KFLGCS 610 (675)
T ss_pred CccccccCCCcceEEecCCC-ceeeCC
Confidence 468999943 4222 2 234 499995
No 213
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.78 E-value=29 Score=36.72 Aligned_cols=55 Identities=25% Similarity=0.602 Sum_probs=36.0
Q ss_pred CccccccCCCcccccCCCcccCCCCCc------eeecCCCCCCcchhhHHHHHh-----cCCCCCCCCccccc
Q 009093 9 VKSIKNVGGQVCQICGDNVGKTVDGNP------FVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKTRYK 70 (544)
Q Consensus 9 ~k~~~~~~gqiCqICGD~VGlt~~Ge~------FVAC~EC~FPVCRpCYeyErk-----eG~q~CPqCKTrYK 70 (544)
.-|.++++..+|.|||..+.+++|-|- -.-||.-- .|+.+| ---|-||=||++-+
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-------HEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-------HEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccch-------HHHhhhhheeecCCCCCchHHHHhh
Confidence 357889999999999999877764332 23343211 122233 34599999998863
No 214
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=24.53 E-value=48 Score=28.13 Aligned_cols=33 Identities=27% Similarity=0.661 Sum_probs=23.0
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhH
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCY 51 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCY 51 (544)
-..++.|.+||..+|. ..|+-. -|+--+...|.
T Consensus 75 i~~~~~C~vC~k~l~~----~~f~~~-p~~~v~H~~C~ 107 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN----SVFVVF-PCGHVVHYSCI 107 (109)
T ss_pred ECCCCCccCcCCcCCC----ceEEEe-CCCeEEecccc
Confidence 3457899999999987 356665 55555566664
No 215
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=24.34 E-value=63 Score=25.05 Aligned_cols=30 Identities=23% Similarity=0.734 Sum_probs=21.8
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhHH
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC-~FPVCRpCYe 52 (544)
+|..|+...-. ..-..|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~~i~----G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGII----GIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcc----cCeEECCCCCCccchHHHhC
Confidence 58888843111 134789999 7999999996
No 216
>PF11261 IRF-2BP1_2: Interferon regulatory factor 2-binding protein zinc finger; InterPro: IPR022750 IRF-2BP1 and IRF-2BP2 are nuclear transcriptional repressor proteins and can inhibit both enhancer-activated and basal transcription. They both contain N-terminal zinc finger and C-terminal RING finger domains []. This entry represents the N-terminal zinc finger domain of IRF-2BP1 and IRF-2BP2.
Probab=24.33 E-value=19 Score=29.21 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=16.6
Q ss_pred ceeecCCCCCCcchhhHHHHH
Q 009093 35 PFVACDVCAFPVCRPCYEYER 55 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyEr 55 (544)
+..-+.++.=||||-|-+||.
T Consensus 15 PWami~df~EpVCRgCvNyEG 35 (54)
T PF11261_consen 15 PWAMIWDFSEPVCRGCVNYEG 35 (54)
T ss_pred chHHHhhccchhhhhhcCccc
Confidence 344566778899999999984
No 217
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.29 E-value=37 Score=32.47 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=16.0
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCC
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCA 43 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~ 43 (544)
+.+.-+|.-||-.+-++.-+ ..-+|..|+
T Consensus 109 g~G~l~C~~Cg~~~~~~~~~-~l~~Cp~C~ 137 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTHPE-RLPPCPKCG 137 (146)
T ss_pred cCceEecccCCCEEEecCCC-cCCCCCCCC
Confidence 34444666666666665433 355566554
No 218
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=24.24 E-value=76 Score=26.23 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=30.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.|.|||+ |+. ++-++ .||.-.||.|.+--.+.++..||.|+.+..
T Consensus 6 ~CpIt~~-lM~----dPVi~--~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGE-LMR----DPVIL--PSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSS-B-S----SEEEE--TTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred CCcCcCc-Hhh----CceeC--CcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 7899885 444 34444 367999999999888888899999987764
No 219
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=24.07 E-value=21 Score=30.53 Aligned_cols=23 Identities=26% Similarity=0.842 Sum_probs=11.9
Q ss_pred cchhhHHHHHhcCCCCCCCCccc
Q 009093 46 VCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 46 VCRpCYeyErkeG~q~CPqCKTr 68 (544)
-|..||........+-||.|+-.
T Consensus 11 rC~aCf~~t~~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 11 RCHACFKITKDMTKQFCPKCGNA 33 (73)
T ss_dssp E-SSS--EES-SS--S-SSS--S
T ss_pred EccccccCcCCCCceeCcccCCC
Confidence 47888888888899999999876
No 220
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=23.74 E-value=38 Score=36.49 Aligned_cols=26 Identities=38% Similarity=1.056 Sum_probs=15.2
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcch-hhH
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCR-PCY 51 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCR-pCY 51 (544)
+|.|||-+ .. + --|.-|+|+-|- +||
T Consensus 9 ~C~ic~vq--~~---~--YtCPRCn~~YCsl~CY 35 (383)
T KOG4317|consen 9 ACGICGVQ--KR---E--YTCPRCNLLYCSLKCY 35 (383)
T ss_pred eccccccc--cc---c--ccCCCCCccceeeeee
Confidence 56666644 11 1 457777777774 576
No 221
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=23.09 E-value=36 Score=24.56 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=9.6
Q ss_pred CCCCCcccccc
Q 009093 61 SCPQCKTRYKK 71 (544)
Q Consensus 61 ~CPqCKTrYKR 71 (544)
.||+|++.|+-
T Consensus 4 ~CP~C~~~~~v 14 (38)
T TIGR02098 4 QCPNCKTSFRV 14 (38)
T ss_pred ECCCCCCEEEe
Confidence 59999999973
No 222
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=22.81 E-value=1.7e+02 Score=27.18 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.0
Q ss_pred cccccchhhhhhhhcccc
Q 009093 201 NVAWKERVDGWKMKQEKN 218 (544)
Q Consensus 201 ~~~wk~r~~~wk~~q~~~ 218 (544)
|...+.|++.=|.+|+++
T Consensus 21 s~E~~a~le~Lr~~~ee~ 38 (142)
T PF11712_consen 21 SPELKARLERLRAEQEER 38 (142)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 677899999998888754
No 223
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.74 E-value=21 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.553 Sum_probs=16.8
Q ss_pred eeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 36 FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
-+-|+.|+.. |+..+..-.||+|+.+.-+.
T Consensus 70 ~~~C~~Cg~~-------~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGHE-------FEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS-E-------EECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCCE-------EecCCCCCCCcCCcCCCcEE
Confidence 3557777753 34444445699999986443
No 224
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.63 E-value=29 Score=40.17 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=8.3
Q ss_pred CCCCCCCcccc
Q 009093 59 NQSCPQCKTRY 69 (544)
Q Consensus 59 ~q~CPqCKTrY 69 (544)
...||+|+...
T Consensus 421 ~~~Cp~Cg~~~ 431 (679)
T PRK05580 421 PKACPECGSTD 431 (679)
T ss_pred CCCCCCCcCCe
Confidence 36899997764
No 225
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=22.63 E-value=1.6e+02 Score=31.60 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=34.6
Q ss_pred cccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHHHHHHHhhHHHHHHcCC
Q 009093 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNI 421 (544)
Q Consensus 350 ~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Eaa~FAr~WvPFCkk~~I 421 (544)
.||||||++ +.-. |++-.-++-+.-+++-+ ..+.-|++-+-.-++|.. ||+++||
T Consensus 66 ~Idv~~P~~---~~~~-------l~~~r~~F~a~Gv~l~~---~~~~~~l~~~~dK~~~y~----~~~~~~i 120 (329)
T PF15632_consen 66 GIDVFVPGR---NREL-------LAAHRDEFEALGVKLLT---ASSAETLELADDKAAFYE----FMEANGI 120 (329)
T ss_pred CCeEEEcCc---cHHH-------HHHHHHHHHHhCCEEEe---cCCHHHHHHHhhHHHHHH----HHHhCCC
Confidence 499999999 2222 33333333333456666 334456666666777887 9999999
No 226
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=22.52 E-value=49 Score=24.82 Aligned_cols=8 Identities=38% Similarity=1.090 Sum_probs=5.0
Q ss_pred cccccCCC
Q 009093 19 VCQICGDN 26 (544)
Q Consensus 19 iCqICGD~ 26 (544)
+|..||..
T Consensus 2 ~Cp~Cg~~ 9 (43)
T PF08271_consen 2 KCPNCGSK 9 (43)
T ss_dssp SBTTTSSS
T ss_pred CCcCCcCC
Confidence 46666665
No 228
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.44 E-value=33 Score=25.86 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=6.1
Q ss_pred CCCCCCCCcc
Q 009093 58 GNQSCPQCKT 67 (544)
Q Consensus 58 G~q~CPqCKT 67 (544)
....||+|+.
T Consensus 25 ~~~~CP~Cg~ 34 (42)
T PF09723_consen 25 DPVPCPECGS 34 (42)
T ss_pred CCCcCCCCCC
Confidence 4466666665
No 229
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=22.43 E-value=41 Score=32.69 Aligned_cols=39 Identities=38% Similarity=0.836 Sum_probs=27.6
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
.++..||-||-.-.. +|.|.-||.|-. +-| -.|-|.-|.
T Consensus 2 ~gg~~CqdCGNqAkk-----------~C~~~rCRtCCk---~rg----~~C~tHvks 40 (154)
T PF05142_consen 2 SGGISCQDCGNQAKK-----------DCSHRRCRTCCK---SRG----FDCPTHVKS 40 (154)
T ss_pred CCCcchhhhcchhhc-----------CCCcchhhhhhc---cCC----CCCccceec
Confidence 457799999976444 799999999974 222 225577763
No 230
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=22.33 E-value=46 Score=27.70 Aligned_cols=19 Identities=32% Similarity=0.950 Sum_probs=12.4
Q ss_pred ecCCCCCCcchhhHHHHHhcCCCCCCCCcc
Q 009093 38 ACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (544)
Q Consensus 38 AC~EC~FPVCRpCYeyErkeG~q~CPqCKT 67 (544)
||.+|.|-+ ++ +.||-|+.
T Consensus 5 AC~~C~~i~----------~~-~~CP~Cgs 23 (61)
T PRK08351 5 ACRHCHYIT----------TE-DRCPVCGS 23 (61)
T ss_pred hhhhCCccc----------CC-CcCCCCcC
Confidence 566665554 33 46999987
No 231
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=22.32 E-value=45 Score=32.27 Aligned_cols=39 Identities=33% Similarity=0.928 Sum_probs=0.0
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcch-hhHHHHHhcCCCCCCCCccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCR-PCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCR-pCYeyErkeG~q~CPqCKTr 68 (544)
++|-||-+. +.---|.-|.||-|. +||.--+. =|||+|+
T Consensus 6 ~tC~ic~e~-------~~KYKCpkC~vPYCSl~CfKiHk~-----tPq~~~v 45 (157)
T KOG2857|consen 6 TTCVICLES-------EIKYKCPKCSVPYCSLPCFKIHKS-----TPQCETV 45 (157)
T ss_pred eeehhhhcc-------hhhccCCCCCCccccchhhhhccC-----Ccccccc
No 232
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=22.26 E-value=2.1e+02 Score=34.52 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHH-hhcccceecccchhhhhhh
Q 009093 270 PYRMVIFLRLIILGIFL-YYRIKNPVHNAIALWLISVICEIWFAISWIF-DQFPKWLPVNRETYLDRLS 336 (544)
Q Consensus 270 ~yRllivl~lv~l~~Yl-~WRit~p~~da~~lWl~l~iaEl~f~~~wlL-~q~~kw~Pv~R~t~~drL~ 336 (544)
+|.++.++.+++.+.+| +|.+.- ..+.|+++++ +.++++|.| .-+.++++-.|.....||.
T Consensus 7 ~~p~~~v~~lflal~~lGl~~~lp----~~~~~~~l~~--~~~a~~~al~~~lrrfr~Pt~~ea~~RLe 69 (820)
T PF13779_consen 7 LWPLLSVLALFLALSWLGLWDLLP----DWLRWALLAA--FAAAALAALVRGLRRFRWPTRAEALRRLE 69 (820)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcc----HHHHHHHHHH--HHHHHHHHHHHHHhhCCCCCHHHHHHHHh
Confidence 35566555555444443 333322 1233433222 445555555 4444555555555554554
No 233
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=22.03 E-value=56 Score=26.97 Aligned_cols=23 Identities=30% Similarity=0.772 Sum_probs=16.0
Q ss_pred chhhHHHHHhcCCC-----CCCCCcccc
Q 009093 47 CRPCYEYERKDGNQ-----SCPQCKTRY 69 (544)
Q Consensus 47 CRpCYeyErkeG~q-----~CPqCKTrY 69 (544)
|+.|-..=.+-+.| -||+||+--
T Consensus 7 C~~CnKlLa~a~~~~yle~KCPrCK~vN 34 (60)
T COG4416 7 CAKCNKLLAEAEGQAYLEKKCPRCKEVN 34 (60)
T ss_pred hHHHhHHHHhcccceeeeecCCccceee
Confidence 77777665555545 699999753
No 234
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=21.99 E-value=32 Score=32.99 Aligned_cols=28 Identities=29% Similarity=0.924 Sum_probs=17.7
Q ss_pred cccccCCCcccC-----CCCCceeecCCCCCCcchhhHHHH
Q 009093 19 VCQICGDNVGKT-----VDGNPFVACDVCAFPVCRPCYEYE 54 (544)
Q Consensus 19 iCqICGD~VGlt-----~~Ge~FVAC~EC~FPVCRpCYeyE 54 (544)
.|.|||.+|--. .+|-. .-||..||.|-
T Consensus 2 ~CEiCG~~i~~~~~~v~iega~--------l~vC~~C~k~G 34 (154)
T TIGR00270 2 NCEICGRKIKGKGFKIVIEGSE--------MTVCGECRKFG 34 (154)
T ss_pred ccccCCCccCCCCeEEEEcCeE--------EehhhhHHhcC
Confidence 399999886311 24443 45778888763
No 235
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=21.91 E-value=61 Score=26.62 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=11.7
Q ss_pred hcCCCCCCCCccccc------ccCCCCcccCCC
Q 009093 56 KDGNQSCPQCKTRYK------KHKGSPAILGDR 82 (544)
Q Consensus 56 keG~q~CPqCKTrYK------R~kgsprV~gd~ 82 (544)
.++|..-|=|-.|-| -..|+=||.|.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~ 47 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEP 47 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCC
Confidence 345555555555543 456777888773
No 236
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.87 E-value=30 Score=40.97 Aligned_cols=50 Identities=30% Similarity=0.679 Sum_probs=31.3
Q ss_pred CcccccCCCcccCCCCCceeecCCC--CCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVC--AFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC--~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
--|-+||-.|.-. -..|.|| .||+|-.--.--...---.||.||-+-.-|
T Consensus 1118 vdc~~cg~~i~~~-----~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~ 1169 (1189)
T KOG2041|consen 1118 VDCSVCGAKIDPY-----DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQH 1169 (1189)
T ss_pred eeeeecCCcCCcc-----CCCChhhcCcCceeeccCCccccceEEEccccccccccc
Confidence 3799999987543 3679999 799995321100001124699999776533
No 237
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.85 E-value=35 Score=35.15 Aligned_cols=28 Identities=21% Similarity=0.701 Sum_probs=13.2
Q ss_pred CCcccccCCCcccC----CC--CCceeecCCCCC
Q 009093 17 GQVCQICGDNVGKT----VD--GNPFVACDVCAF 44 (544)
Q Consensus 17 gqiCqICGD~VGlt----~~--Ge~FVAC~EC~F 44 (544)
...|.|||..=.+. .. |.-+.-|--|++
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t 205 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGT 205 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCC
Confidence 46999999982221 22 778999988864
No 238
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=21.79 E-value=2.7e+02 Score=25.73 Aligned_cols=53 Identities=21% Similarity=0.547 Sum_probs=29.5
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccCCC-----------Cch-----hHHHHHHHHHHHHHHHHHHHhhc
Q 009093 268 INPYRMVIFLRLIILGIFLYYRIKNPV-----------HNA-----IALWLISVICEIWFAISWIFDQF 320 (544)
Q Consensus 268 ~~~yRllivl~lv~l~~Yl~WRit~p~-----------~da-----~~lWl~l~iaEl~f~~~wlL~q~ 320 (544)
+-|||-+.+...++++.|-+||+..+. +.. ..+|+..+++=+..++-|+...|
T Consensus 47 lepyRp~fi~~tl~~lg~a~~~~yr~~~~c~~g~~C~~~~~~~~~~~~lwi~t~~vl~~l~~py~~p~f 115 (116)
T PF02411_consen 47 LEPYRPYFIALTLLFLGYAFWRLYRPRKACEPGSACARPQSRRQTKILLWIVTVLVLLLLAFPYYAPLF 115 (116)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557887655555555555555554321 111 24687766666666666665443
No 239
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=21.71 E-value=46 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=17.3
Q ss_pred cccccCCC--cccCCCCCceeecCCCCC
Q 009093 19 VCQICGDN--VGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 19 iCqICGD~--VGlt~~Ge~FVAC~EC~F 44 (544)
+|+.|+-. ....+++-.|.-|+-||.
T Consensus 82 lC~~C~spdT~l~k~~r~~~l~C~aCGa 109 (110)
T smart00653 82 LCPECGSPDTELIKENRLFFLKCEACGA 109 (110)
T ss_pred ECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence 68888844 333345666888888874
No 240
>PRK00420 hypothetical protein; Validated
Probab=21.51 E-value=74 Score=29.34 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=21.1
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCC
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFP 45 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FP 45 (544)
-+..|..||-.+--..+|+ +-|..|+-+
T Consensus 22 l~~~CP~Cg~pLf~lk~g~--~~Cp~Cg~~ 49 (112)
T PRK00420 22 LSKHCPVCGLPLFELKDGE--VVCPVHGKV 49 (112)
T ss_pred ccCCCCCCCCcceecCCCc--eECCCCCCe
Confidence 4579999998876667898 458777654
No 241
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=21.42 E-value=69 Score=33.75 Aligned_cols=33 Identities=21% Similarity=0.579 Sum_probs=25.6
Q ss_pred ceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
+++.|.+|+-.+ |.-+......+||+|.-.++.
T Consensus 26 ~~~~c~~c~~~~----~~~~l~~~~~vc~~c~~h~rl 58 (292)
T PRK05654 26 LWTKCPSCGQVL----YRKELEANLNVCPKCGHHMRI 58 (292)
T ss_pred CeeECCCccchh----hHHHHHhcCCCCCCCCCCeeC
Confidence 799999988654 555555556899999998863
No 242
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=21.35 E-value=62 Score=26.52 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=6.4
Q ss_pred CCCCCCCCccccc
Q 009093 58 GNQSCPQCKTRYK 70 (544)
Q Consensus 58 G~q~CPqCKTrYK 70 (544)
-+-.||.|+-++-
T Consensus 13 v~~~Cp~cGipth 25 (55)
T PF13824_consen 13 VNFECPDCGIPTH 25 (55)
T ss_pred cCCcCCCCCCcCc
Confidence 3344555555553
No 243
>PRK03001 M48 family peptidase; Provisional
Probab=21.34 E-value=3.1e+02 Score=28.25 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=18.5
Q ss_pred HHhhcccceecccchhhhhhhhhhhccCCCCCCccccEEecc
Q 009093 316 IFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVST 357 (544)
Q Consensus 316 lL~q~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP~VDVFI~T 357 (544)
++-.+.+ +|+.+...|. |....++-.....+|..+|+|--
T Consensus 52 i~~~~~~-~~l~~~~~p~-L~~~v~~la~~~g~~~p~v~v~~ 91 (283)
T PRK03001 52 VLKMYNA-QEVDENTAPQ-FYRMVRELAQRAGLPMPKVYLIN 91 (283)
T ss_pred HHHHcCC-EECCccccHH-HHHHHHHHHHHcCCCCCeEEEec
Confidence 3333444 7777653321 22222211123446777888753
No 244
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=21.27 E-value=35 Score=43.29 Aligned_cols=32 Identities=38% Similarity=0.897 Sum_probs=0.0
Q ss_pred CCCcchhh-------HHHHHhcCCCCCCCCcccccccCCC
Q 009093 43 AFPVCRPC-------YEYERKDGNQSCPQCKTRYKKHKGS 75 (544)
Q Consensus 43 ~FPVCRpC-------YeyErkeG~q~CPqCKTrYKR~kgs 75 (544)
|||.|+|| |+-.-.-.|+.| |||+-|-|..|+
T Consensus 1766 G~P~CgpC~CavsKgfdp~CnKt~G~C-qCKe~hy~~~~~ 1804 (2531)
T KOG4289|consen 1766 GFPTCGPCNCAVSKGFDPDCNKTNGQC-QCKENHYRPIGS 1804 (2531)
T ss_pred CCCCccCccccccCCCCCCccccCcce-eeccccccCCCc
No 245
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.23 E-value=33 Score=34.60 Aligned_cols=39 Identities=21% Similarity=0.509 Sum_probs=28.4
Q ss_pred CcccccCCCcccC---CC-------C-CceeecCCCCCCcchhhHHHHHh
Q 009093 18 QVCQICGDNVGKT---VD-------G-NPFVACDVCAFPVCRPCYEYERK 56 (544)
Q Consensus 18 qiCqICGD~VGlt---~~-------G-e~FVAC~EC~FPVCRpCYeyErk 56 (544)
-||+.||.+--.+ .| | .+-|-++|=--++||-||.-..+
T Consensus 145 aIC~~Cg~~At~~~Rl~~~~~a~~~~~~i~IGg~e~Y~a~CR~h~~~~~~ 194 (201)
T COG1435 145 AICNVCGRKATRTLRLINGGPAVYEGPQILIGGNESYEARCRKHHKEPGK 194 (201)
T ss_pred HHHHHhCCcceEEEEecCCCCCccCCCeEEECCCcceeehhhhhhhcccc
Confidence 4899999883222 23 4 35788999999999999964433
No 246
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=21.23 E-value=38 Score=38.43 Aligned_cols=31 Identities=26% Similarity=0.791 Sum_probs=13.9
Q ss_pred ceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc----ccccCCC
Q 009093 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR----YKKHKGS 75 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr----YKR~kgs 75 (544)
.|--|++|||-. + + .-.||.|+.+ |.|.-|=
T Consensus 490 ~~~~C~~CG~~~-------~--~-~~~CP~CGs~~~~~~~Rv~GY 524 (546)
T PF13597_consen 490 PIDICPDCGYIG-------G--E-GDKCPKCGSENIEVYSRVTGY 524 (546)
T ss_dssp -EEEETTT---S------------EEE-CCC----EEEEB-SSSS
T ss_pred CcccccCCCcCC-------C--C-CCCCCCCCCcccceEEEeecc
Confidence 466788888632 2 2 5689999987 6655443
No 247
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=21.21 E-value=38 Score=33.66 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=9.8
Q ss_pred cCCCCCCCCcccccc
Q 009093 57 DGNQSCPQCKTRYKK 71 (544)
Q Consensus 57 eG~q~CPqCKTrYKR 71 (544)
.+.-.||.|+....|
T Consensus 320 ~r~~~C~~cg~~~~r 334 (364)
T COG0675 320 GRLFKCPRCGFVHDR 334 (364)
T ss_pred ceeEECCCCCCeehh
Confidence 444578888877653
No 248
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=21.11 E-value=74 Score=27.32 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=29.1
Q ss_pred eEEEcCCCcchhhHHHH--HH--HHHHHHhhHHHHHHcCCCcCC
Q 009093 386 SCYVSDDGAAMLTFEAL--SE--TSEFARKWVPFCKKYNIEPRA 425 (544)
Q Consensus 386 sVYVsDDGgs~ltf~al--~E--aa~FAr~WvPFCkk~~IepRa 425 (544)
+++|+|||.+...++.. .. ..+.-+.+.-.+.+|||+-..
T Consensus 21 ~~~ltDdG~Tl~~L~~~G~~~~~s~~R~~~l~~il~~~gv~~~~ 64 (90)
T PF08861_consen 21 SIRLTDDGYTLMNLSSSGIDIDRSKKRKKILNSILNGFGVELDE 64 (90)
T ss_pred eEEEecCHHHHHhHhHcCCccccchHHHHHHHHHHHHcCccccC
Confidence 47899999998887742 22 234445667899999998776
No 249
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=21.00 E-value=31 Score=36.00 Aligned_cols=55 Identities=22% Similarity=0.503 Sum_probs=44.2
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCC--CCcccccccC
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCP--QCKTRYKKHK 73 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CP--qCKTrYKR~k 73 (544)
-.|.+|--+.-|+.|=-+.+ =.||--.+|-.|..--..-|---|| +|++-.+..|
T Consensus 11 ~~CPvCksDrYLnPdik~li-nPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILI-NPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred ccCCccccccccCCCeEEEE-CHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 37999999999987654444 4489999999999877889999999 9988665443
No 250
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=20.73 E-value=41 Score=37.36 Aligned_cols=53 Identities=28% Similarity=0.747 Sum_probs=36.0
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHH-hcCCCCCCCCcccccccCCCCccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER-KDGNQSCPQCKTRYKKHKGSPAIL 79 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyEr-keG~q~CPqCKTrYKR~kgsprV~ 79 (544)
-+.|.||.++ +--|-=.-||--.|-.|.--=. .++.|-||=|+-.- ||.-+|-
T Consensus 369 FeLCKICaen-------dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI---KGte~vi 422 (563)
T KOG1785|consen 369 FELCKICAEN-------DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI---KGTEPVI 422 (563)
T ss_pred HHHHHHhhcc-------CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEe---cccccee
Confidence 3689999875 2223334689999999986433 45579999998655 4544443
No 251
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=20.56 E-value=55 Score=38.48 Aligned_cols=36 Identities=28% Similarity=0.692 Sum_probs=19.6
Q ss_pred ceeecCCCCCCcchhhHHHHHhcCCCCCCCCcc-------cccccCCC
Q 009093 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT-------RYKKHKGS 75 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKT-------rYKR~kgs 75 (544)
.|--|++|||.-=.-+ ..+| -.||.|+. .|.|..|-
T Consensus 640 ~~~~C~~CG~~Ge~~~----~~~~-~~CP~CG~~~~~~~~v~~Ri~GY 682 (711)
T PRK09263 640 PIDECYECGFTGEFEC----TEKG-FTCPKCGNHDPKTVSVTRRTCGY 682 (711)
T ss_pred CCcccCCCCCCccccC----CCCC-CcCcCCCCCCCcceeEEEeeccc
Confidence 4556777776210000 1223 68999983 56666553
No 252
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=20.49 E-value=20 Score=29.23 Aligned_cols=49 Identities=33% Similarity=0.647 Sum_probs=33.8
Q ss_pred cccccCCCcccCC---CCCc-ee----ecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 19 VCQICGDNVGKTV---DGNP-FV----ACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 19 iCqICGD~VGlt~---~Ge~-FV----AC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
.|+-|+..+.... .|.. ++ .| -|.+-.|.||.-...|+....||.|+..
T Consensus 5 ~Cp~C~~~~~T~v~~~~g~~t~~~~~ll~-~~~~~~~iP~~~~~~kd~~H~Cp~C~~~ 61 (67)
T smart00714 5 FCPRCQNNVTTRVETETGVCAWLICCLLF-LLCFCCCLPCCLDSFKDVNHYCPNCGAF 61 (67)
T ss_pred ECCCCCCEEEEEEEEEeChHHHHHHHHHH-HHHHHHHHHHhcccccCccEECCCCCCE
Confidence 6888888866553 3431 11 12 1345677888777899999999999984
No 253
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=20.40 E-value=80 Score=24.64 Aligned_cols=29 Identities=31% Similarity=1.022 Sum_probs=23.2
Q ss_pred cccccCC-CcccCCCCCceeecCCC-CCCcchhhHH
Q 009093 19 VCQICGD-NVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (544)
Q Consensus 19 iCqICGD-~VGlt~~Ge~FVAC~EC-~FPVCRpCYe 52 (544)
.|..|.. +|- | +-..|.+| .|-+|-.||.
T Consensus 2 ~C~~C~~~~i~----g-~R~~C~~C~dydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDIS----G-IRFPCQVCRDYSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCce----E-eeEECCCCCCcCchHHHHh
Confidence 5888987 432 4 65699999 8999999997
No 254
>PRK13751 putative mercuric transport protein; Provisional
Probab=20.22 E-value=2.8e+02 Score=25.89 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHHHHHHhhhhcc
Q 009093 268 INPYRMVIFLRLIILGIFLYYRIK 291 (544)
Q Consensus 268 ~~~yRllivl~lv~l~~Yl~WRit 291 (544)
+-|||.+.+...++.+.|-+||+.
T Consensus 47 lepyr~~fi~~a~~~l~~a~~~~y 70 (116)
T PRK13751 47 LEPYRPIFIGAALVALFFAWRRIY 70 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568998765544444445556654
No 255
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=20.17 E-value=77 Score=24.71 Aligned_cols=30 Identities=33% Similarity=0.972 Sum_probs=23.3
Q ss_pred cccccC-CCcccCCCCCceeecCCC-CCCcchhhHHH
Q 009093 19 VCQICG-DNVGKTVDGNPFVACDVC-AFPVCRPCYEY 53 (544)
Q Consensus 19 iCqICG-D~VGlt~~Ge~FVAC~EC-~FPVCRpCYey 53 (544)
.|..|+ ..|. | ...-|.+| .|-+|-.||..
T Consensus 2 ~C~~C~~~~i~----g-~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFT----G-RRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcE----E-eeEEeCCCCCCccchhHHhC
Confidence 588898 4443 4 66788888 89999999973
No 256
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=20.10 E-value=56 Score=30.94 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=16.0
Q ss_pred cccccCCC--cccCCCCCceeecCCCCCC
Q 009093 19 VCQICGDN--VGKTVDGNPFVACDVCAFP 45 (544)
Q Consensus 19 iCqICGD~--VGlt~~Ge~FVAC~EC~FP 45 (544)
+|+.||-. .-..++.-.|.-|+-||.-
T Consensus 104 lC~~C~spdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T PRK03988 104 ICPECGSPDTKLIKEGRIWVLKCEACGAE 132 (138)
T ss_pred ECCCCCCCCcEEEEcCCeEEEEcccCCCC
Confidence 68888743 2222333357788888753
Done!