Query 009093
Match_columns 544
No_of_seqs 305 out of 629
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1weo_A Cellulose synthase, cat 100.0 6.5E-48 2.2E-52 327.7 9.3 90 3-93 2-91 (93)
2 4hg6_A Cellulose synthase subu 99.5 5.9E-14 2E-18 156.8 13.9 141 270-422 64-215 (802)
3 1e4u_A Transcriptional repress 97.2 0.00036 1.2E-08 57.4 4.7 53 16-71 10-62 (78)
4 1xhb_A Polypeptide N-acetylgal 96.5 0.0023 8E-08 66.0 5.3 57 345-404 25-82 (472)
5 3bcv_A Putative glycosyltransf 96.1 0.0069 2.3E-07 55.4 5.8 52 347-404 3-54 (240)
6 2ffu_A Ppgalnact-2, polypeptid 96.0 0.0049 1.7E-07 64.4 5.0 54 345-401 62-115 (501)
7 2d7i_A Polypeptide N-acetylgal 95.8 0.0061 2.1E-07 65.5 4.7 55 346-403 109-164 (570)
8 1qg8_A Protein (spore coat pol 95.8 0.0075 2.6E-07 55.8 4.7 50 349-404 1-50 (255)
9 2z86_A Chondroitin synthase; G 95.2 0.014 4.9E-07 62.2 4.8 51 345-400 89-139 (625)
10 3ckj_A Putative uncharacterize 94.0 0.048 1.6E-06 54.0 5.0 53 347-404 46-98 (329)
11 3ng2_A RNF4, snurf, ring finge 92.7 0.051 1.7E-06 41.9 2.2 55 14-70 7-62 (71)
12 2ea6_A Ring finger protein 4; 92.6 0.13 4.5E-06 39.1 4.5 54 15-70 13-67 (69)
13 1t1h_A Gspef-atpub14, armadill 91.6 0.14 4.7E-06 40.4 3.6 47 17-70 8-54 (78)
14 1vyx_A ORF K3, K3RING; zinc-bi 91.6 0.17 5.7E-06 39.6 4.0 50 16-70 5-58 (60)
15 2kiz_A E3 ubiquitin-protein li 91.4 0.36 1.2E-05 37.1 5.8 53 15-72 12-64 (69)
16 2ckl_B Ubiquitin ligase protei 91.4 0.15 5.1E-06 46.1 4.0 46 19-70 56-101 (165)
17 2ect_A Ring finger protein 126 91.4 0.56 1.9E-05 36.9 6.9 53 15-72 13-65 (78)
18 1g25_A CDK-activating kinase a 91.4 0.18 6.1E-06 38.6 3.9 53 17-71 3-55 (65)
19 2xeu_A Ring finger protein 4; 91.1 0.083 2.9E-06 39.6 1.8 52 17-70 3-55 (64)
20 2z86_A Chondroitin synthase; G 91.1 0.19 6.4E-06 53.6 5.1 53 346-404 372-424 (625)
21 2d8s_A Cellular modulator of i 91.1 0.28 9.7E-06 40.3 5.1 56 13-71 11-70 (80)
22 1iym_A EL5; ring-H2 finger, ub 91.0 0.32 1.1E-05 35.6 4.9 50 16-69 4-53 (55)
23 2ecm_A Ring finger and CHY zin 90.5 0.34 1.2E-05 35.4 4.6 50 16-69 4-53 (55)
24 2ysl_A Tripartite motif-contai 90.3 0.25 8.6E-06 38.2 3.9 49 16-71 19-69 (73)
25 3f1y_A Mannosyl-3-phosphoglyce 89.9 0.22 7.5E-06 51.5 4.2 52 348-404 93-146 (387)
26 3fl2_A E3 ubiquitin-protein li 89.6 0.27 9.2E-06 42.4 3.9 47 18-71 53-99 (124)
27 1v87_A Deltex protein 2; ring- 89.1 0.4 1.4E-05 40.4 4.6 60 16-75 24-98 (114)
28 2ecy_A TNF receptor-associated 88.6 0.34 1.2E-05 37.1 3.5 48 17-71 15-62 (66)
29 2ecv_A Tripartite motif-contai 88.5 0.91 3.1E-05 35.5 6.0 47 17-70 19-70 (85)
30 2ct2_A Tripartite motif protei 88.4 0.55 1.9E-05 37.4 4.7 51 17-70 15-67 (88)
31 2c2l_A CHIP, carboxy terminus 87.9 0.35 1.2E-05 46.0 3.8 48 16-70 207-254 (281)
32 2ecw_A Tripartite motif-contai 87.5 1.2 4.2E-05 34.8 6.2 47 17-70 19-70 (85)
33 3l7i_A Teichoic acid biosynthe 87.1 0.12 4E-06 56.8 0.0 51 349-405 2-52 (729)
34 3lrq_A E3 ubiquitin-protein li 86.7 0.59 2E-05 39.1 4.1 47 18-70 23-69 (100)
35 3hct_A TNF receptor-associated 86.7 0.62 2.1E-05 39.9 4.3 46 18-70 19-64 (118)
36 2f42_A STIP1 homology and U-bo 86.7 0.47 1.6E-05 44.9 3.9 46 18-70 107-152 (179)
37 2y43_A E3 ubiquitin-protein li 85.6 0.75 2.6E-05 37.9 4.1 46 18-70 23-68 (99)
38 3l11_A E3 ubiquitin-protein li 85.5 0.34 1.1E-05 41.1 2.0 46 18-70 16-61 (115)
39 1chc_A Equine herpes virus-1 r 85.0 1.1 3.8E-05 34.1 4.6 49 17-72 5-53 (68)
40 2djb_A Polycomb group ring fin 83.4 1.7 5.9E-05 33.7 5.2 49 17-72 15-63 (72)
41 2ep4_A Ring finger protein 24; 82.7 2 6.7E-05 33.3 5.2 51 16-71 14-64 (74)
42 1x4j_A Ring finger protein 38; 82.7 0.64 2.2E-05 36.4 2.4 52 16-72 22-73 (75)
43 2ecl_A Ring-box protein 2; RNF 82.0 1.5 5.2E-05 35.3 4.5 56 15-71 13-76 (81)
44 1fo8_A Alpha-1,3-mannosyl-glyc 82.0 1.1 3.7E-05 46.1 4.4 46 348-398 1-46 (343)
45 1z6u_A NP95-like ring finger p 81.9 1.1 3.9E-05 40.4 4.0 46 18-70 79-124 (150)
46 3hcs_A TNF receptor-associated 81.5 1.1 3.7E-05 40.5 3.8 46 18-70 19-64 (170)
47 2kr4_A Ubiquitin conjugation f 81.3 1 3.5E-05 36.9 3.2 46 17-70 14-59 (85)
48 4ayc_A E3 ubiquitin-protein li 81.2 1.1 3.9E-05 39.3 3.7 44 19-70 55-98 (138)
49 2kre_A Ubiquitin conjugation f 81.1 1 3.5E-05 38.2 3.3 46 17-70 29-74 (100)
50 2ysj_A Tripartite motif-contai 80.7 3.3 0.00011 31.1 5.7 43 16-65 19-63 (63)
51 2l0b_A E3 ubiquitin-protein li 80.6 1.1 3.6E-05 36.9 3.1 49 17-70 40-88 (91)
52 1jm7_A BRCA1, breast cancer ty 80.3 1.5 5.3E-05 36.4 4.1 46 18-70 22-69 (112)
53 2zet_C Melanophilin; complex, 80.1 0.28 9.6E-06 45.4 -0.6 51 16-68 67-117 (153)
54 3ztg_A E3 ubiquitin-protein li 80.0 2 6.8E-05 34.7 4.5 48 17-70 13-61 (92)
55 2csy_A Zinc finger protein 183 79.5 3.3 0.00011 32.7 5.6 46 17-70 15-60 (81)
56 2ckl_A Polycomb group ring fin 79.5 1.6 5.4E-05 36.6 3.9 47 17-70 15-61 (108)
57 1jm7_B BARD1, BRCA1-associated 79.0 1.4 4.7E-05 37.6 3.5 45 17-70 22-66 (117)
58 2d8t_A Dactylidin, ring finger 78.9 1.7 5.8E-05 33.7 3.6 48 15-70 13-60 (71)
59 4fix_A UDP-galactofuranosyl tr 78.4 0.85 2.9E-05 50.4 2.4 46 347-396 178-224 (657)
60 1rmd_A RAG1; V(D)J recombinati 78.1 1.9 6.6E-05 36.4 4.0 47 18-71 24-70 (116)
61 2yur_A Retinoblastoma-binding 77.1 2.5 8.7E-05 33.1 4.2 49 17-71 15-64 (74)
62 4ap4_A E3 ubiquitin ligase RNF 76.9 0.98 3.3E-05 38.2 1.9 54 15-70 70-124 (133)
63 1wgm_A Ubiquitin conjugation f 76.6 1.9 6.5E-05 36.4 3.5 46 17-70 22-68 (98)
64 2ecn_A Ring finger protein 141 76.2 2.1 7.2E-05 32.8 3.4 48 16-72 14-61 (70)
65 2egp_A Tripartite motif-contai 76.2 0.81 2.8E-05 35.7 1.1 47 17-70 12-64 (79)
66 1zbd_B Rabphilin-3A; G protein 75.0 1.7 5.8E-05 39.3 3.0 38 14-53 52-89 (134)
67 2vje_A E3 ubiquitin-protein li 74.2 1.5 5.1E-05 34.0 2.1 52 13-70 4-56 (64)
68 2ea5_A Cell growth regulator w 73.0 2.7 9.2E-05 33.1 3.4 45 15-71 13-58 (68)
69 3ky9_A Proto-oncogene VAV; cal 72.9 1.7 5.9E-05 46.8 3.0 37 14-53 526-563 (587)
70 3dpl_R Ring-box protein 1; ubi 72.1 4.1 0.00014 35.1 4.5 55 15-70 35-100 (106)
71 4ap4_A E3 ubiquitin ligase RNF 71.2 1.7 5.6E-05 36.7 1.9 54 16-71 6-60 (133)
72 2y1n_A E3 ubiquitin-protein li 69.5 3.2 0.00011 43.6 4.0 47 18-71 333-379 (389)
73 3vk6_A E3 ubiquitin-protein li 69.2 3 0.0001 36.5 3.1 49 18-72 2-50 (101)
74 1bor_A Transcription factor PM 69.1 4.2 0.00014 30.4 3.5 45 17-72 6-50 (56)
75 2vrw_B P95VAV, VAV1, proto-onc 67.7 2.8 9.7E-05 42.7 3.1 37 13-52 353-390 (406)
76 2ecg_A Baculoviral IAP repeat- 67.4 3.4 0.00012 32.5 2.9 42 18-71 26-68 (75)
77 3h0g_L DNA-directed RNA polyme 65.2 3.7 0.00012 33.1 2.6 30 15-46 19-48 (63)
78 3knv_A TNF receptor-associated 64.9 1.9 6.4E-05 38.6 0.9 45 18-69 32-76 (141)
79 2jny_A Uncharacterized BCR; st 63.5 1.1 3.6E-05 36.4 -0.9 29 53-81 22-50 (67)
80 2ecj_A Tripartite motif-contai 62.5 15 0.00051 26.6 5.4 43 16-65 14-58 (58)
81 2dj7_A Actin-binding LIM prote 61.8 4.7 0.00016 32.4 2.7 38 9-46 7-52 (80)
82 3nw0_A Non-structural maintena 61.7 6.2 0.00021 38.5 4.0 48 17-70 180-228 (238)
83 2k16_A Transcription initiatio 60.7 4 0.00014 32.5 2.1 52 16-71 17-71 (75)
84 2csz_A Synaptotagmin-like prot 60.3 7 0.00024 32.6 3.5 39 14-54 22-60 (76)
85 3vth_A Hydrogenase maturation 59.8 3.7 0.00013 46.5 2.4 57 15-71 109-195 (761)
86 3v43_A Histone acetyltransfera 57.6 10 0.00035 32.6 4.3 53 17-69 5-65 (112)
87 1m3v_A FLIN4, fusion of the LI 57.4 9.5 0.00032 32.7 4.1 53 16-70 4-80 (122)
88 4ic3_A E3 ubiquitin-protein li 57.2 5.8 0.0002 31.3 2.4 42 18-71 25-67 (74)
89 3t6p_A Baculoviral IAP repeat- 55.3 5.1 0.00018 41.2 2.3 43 17-71 295-338 (345)
90 2cup_A Skeletal muscle LIM-pro 54.5 7.5 0.00026 31.8 2.8 53 15-70 3-77 (101)
91 2d8y_A Eplin protein; LIM doma 54.0 26 0.00087 28.3 5.9 35 9-43 7-49 (91)
92 2l5u_A Chromodomain-helicase-D 52.7 10 0.00035 29.5 3.1 48 13-67 7-57 (61)
93 2ku3_A Bromodomain-containing 52.7 4.6 0.00016 32.6 1.2 52 14-67 13-65 (71)
94 2xjy_A Rhombotin-2; oncoprotei 52.5 8.8 0.0003 32.8 3.0 26 44-70 52-77 (131)
95 2js4_A UPF0434 protein BB2007; 51.0 1.5 5.3E-05 35.7 -1.9 37 45-81 12-48 (70)
96 1rut_X Flinc4, fusion protein 50.4 9.4 0.00032 35.1 3.1 54 15-70 3-80 (188)
97 2yu4_A E3 SUMO-protein ligase 49.9 12 0.00042 30.8 3.4 45 18-68 8-59 (94)
98 1xwh_A Autoimmune regulator; P 49.2 6.3 0.00022 31.0 1.5 49 13-68 4-55 (66)
99 2co8_A NEDD9 interacting prote 48.8 13 0.00044 29.7 3.3 63 11-76 9-79 (82)
100 2yho_A E3 ubiquitin-protein li 48.6 12 0.0004 30.1 3.0 42 18-71 19-61 (79)
101 1wew_A DNA-binding family prot 48.6 11 0.00036 30.6 2.7 56 10-70 9-74 (78)
102 2cor_A Pinch protein; LIM doma 47.7 15 0.00052 29.1 3.5 38 12-49 10-54 (79)
103 2l43_A N-teminal domain from h 47.6 8.5 0.00029 32.2 2.1 53 15-69 23-76 (88)
104 1we9_A PHD finger family prote 47.3 7.5 0.00026 30.0 1.6 54 16-72 5-62 (64)
105 4a0k_B E3 ubiquitin-protein li 47.3 4.7 0.00016 35.5 0.5 54 16-70 47-111 (117)
106 4g9i_A Hydrogenase maturation 47.2 7 0.00024 44.3 1.9 58 14-71 103-190 (772)
107 1wim_A KIAA0161 protein; ring 47.2 13 0.00044 30.3 3.1 49 17-69 5-62 (94)
108 1tot_A CREB-binding protein; z 46.8 5.9 0.0002 30.3 0.9 31 17-53 6-37 (52)
109 2xqn_T Testin, TESS; metal-bin 46.3 10 0.00036 32.2 2.5 25 43-70 50-74 (126)
110 2vje_B MDM4 protein; proto-onc 46.2 10 0.00036 29.0 2.2 48 17-70 7-55 (63)
111 3lqh_A Histone-lysine N-methyl 46.0 11 0.00036 35.7 2.7 54 16-69 1-64 (183)
112 1twf_L ABC10-alpha, DNA-direct 45.8 8.2 0.00028 31.4 1.7 25 18-44 29-53 (70)
113 3htk_C E3 SUMO-protein ligase 45.3 10 0.00036 38.1 2.7 49 16-70 180-231 (267)
114 1m4f_A Hepcidin; strand-loop-s 45.0 1.6 5.6E-05 29.6 -2.2 23 43-67 3-25 (26)
115 3t7l_A Zinc finger FYVE domain 44.7 20 0.00069 29.8 3.9 42 10-54 13-54 (90)
116 1x61_A Thyroid receptor intera 44.6 23 0.0008 27.0 4.1 38 15-52 3-62 (72)
117 1wev_A Riken cDNA 1110020M19; 44.3 5.2 0.00018 33.4 0.3 56 14-71 13-75 (88)
118 2lri_C Autoimmune regulator; Z 44.1 14 0.00047 29.4 2.7 45 16-67 11-58 (66)
119 2bo4_A Mannosylglycerate synth 43.9 23 0.00077 36.9 5.0 46 353-405 4-49 (397)
120 1mm2_A MI2-beta; PHD, zinc fin 43.2 14 0.00046 28.7 2.5 47 15-68 7-56 (61)
121 1f62_A Transcription factor WS 43.1 14 0.00049 27.2 2.5 45 19-67 2-49 (51)
122 3a43_A HYPD, hydrogenase nicke 42.5 4.5 0.00015 36.5 -0.5 12 59-70 107-118 (139)
123 2gai_A DNA topoisomerase I; zi 42.4 5 0.00017 44.4 -0.2 45 19-68 574-621 (633)
124 2ct0_A Non-SMC element 1 homol 40.2 38 0.0013 27.5 4.8 49 16-70 14-63 (74)
125 1dl6_A Transcription factor II 39.5 20 0.0007 27.8 3.0 24 19-44 13-38 (58)
126 2gmg_A Hypothetical protein PF 39.3 9.7 0.00033 33.5 1.2 25 38-68 69-93 (105)
127 2rgt_A Fusion of LIM/homeobox 37.8 28 0.00095 31.3 4.0 50 17-69 6-75 (169)
128 1x63_A Skeletal muscle LIM-pro 37.5 17 0.00058 28.5 2.3 29 15-43 13-50 (82)
129 2ysm_A Myeloid/lymphoid or mix 36.1 22 0.00075 30.1 2.9 51 14-68 4-57 (111)
130 1a7i_A QCRP2 (LIM1); LIM domai 35.9 15 0.00051 28.9 1.7 37 16-52 6-63 (81)
131 1x4l_A Skeletal muscle LIM-pro 35.7 26 0.00088 26.8 3.0 13 16-28 4-16 (72)
132 2puy_A PHD finger protein 21A; 35.2 9 0.00031 29.4 0.3 49 15-70 3-54 (60)
133 1wen_A Inhibitor of growth fam 35.2 49 0.0017 26.5 4.7 61 8-74 7-71 (71)
134 1g47_A Pinch protein; LIM doma 35.1 17 0.00057 28.2 1.8 31 15-45 9-48 (77)
135 2hf1_A Tetraacyldisaccharide-1 34.7 1.9 6.4E-05 35.0 -3.8 37 45-81 12-48 (68)
136 2jtn_A LIM domain-binding prot 34.3 28 0.00095 31.7 3.5 53 14-69 57-129 (182)
137 1wge_A Hypothetical protein 26 32.8 15 0.00051 30.9 1.3 27 19-46 32-62 (83)
138 2l9u_A Receptor tyrosine-prote 32.7 26 0.0009 25.4 2.4 16 275-290 17-32 (40)
139 3ttc_A HYPF, transcriptional r 32.4 11 0.00039 42.0 0.7 56 14-69 14-99 (657)
140 2kwj_A Zinc finger protein DPF 32.0 33 0.0011 29.5 3.4 49 18-66 2-59 (114)
141 2jr7_A DPH3 homolog; DESR1, CS 30.9 11 0.00038 32.2 0.2 27 19-46 25-55 (89)
142 3u5n_A E3 ubiquitin-protein li 30.9 19 0.00065 33.9 1.8 48 16-70 6-56 (207)
143 3v43_A Histone acetyltransfera 30.8 25 0.00086 30.1 2.4 46 19-67 63-111 (112)
144 3f6q_B LIM and senescent cell 30.3 31 0.0011 25.9 2.6 33 14-46 8-49 (72)
145 1x62_A C-terminal LIM domain p 30.0 49 0.0017 25.9 3.9 31 15-45 13-50 (79)
146 3o36_A Transcription intermedi 29.6 22 0.00076 32.7 2.0 47 16-69 3-52 (184)
147 1iml_A CRIP, cysteine rich int 29.5 27 0.00094 27.0 2.3 20 44-66 48-68 (76)
148 3mpx_A FYVE, rhogef and PH dom 29.3 11 0.00039 38.3 0.0 56 12-70 370-431 (434)
149 1lko_A Rubrerythrin all-iron(I 29.2 9.3 0.00032 35.8 -0.6 25 37-68 156-180 (191)
150 2ksl_A U1-agatoxin-TA1A; insec 29.2 1.4 4.8E-05 33.2 -4.9 25 17-41 20-48 (51)
151 2d74_B Translation initiation 29.1 28 0.00096 32.1 2.6 27 18-44 105-133 (148)
152 1yop_A KTI11P; zinc finger, me 28.5 13 0.00045 31.3 0.2 27 19-46 25-55 (83)
153 2e72_A POGO transposable eleme 28.1 21 0.00071 27.5 1.2 15 58-72 11-25 (49)
154 2jr6_A UPF0434 protein NMA0874 27.9 3.2 0.00011 33.6 -3.5 27 55-81 22-48 (68)
155 2e6r_A Jumonji/ARID domain-con 27.4 17 0.00059 30.5 0.7 54 11-68 10-66 (92)
156 1wem_A Death associated transc 27.0 40 0.0014 26.8 2.8 52 14-70 13-72 (76)
157 2orv_A Thymidine kinase; TP4A 26.8 19 0.00064 35.4 1.0 35 18-52 151-190 (234)
158 2fiy_A Protein FDHE homolog; F 26.4 31 0.0011 35.1 2.5 30 15-44 180-216 (309)
159 1nyp_A Pinch protein; LIM doma 26.1 31 0.0011 25.9 2.0 13 16-28 4-16 (66)
160 2zu9_A Mannosyl-3-phosphoglyce 25.9 85 0.0029 33.0 5.8 41 349-398 51-91 (394)
161 1x4k_A Skeletal muscle LIM-pro 25.8 30 0.001 26.3 1.8 14 16-29 4-17 (72)
162 1wd2_A Ariadne-1 protein homol 25.6 29 0.00098 27.1 1.7 24 56-79 3-26 (60)
163 2akl_A PHNA-like protein PA012 25.3 26 0.00089 32.1 1.6 21 49-70 35-55 (138)
164 2yt5_A Metal-response element- 25.2 19 0.00066 27.8 0.6 51 16-68 5-61 (66)
165 2lv9_A Histone-lysine N-methyl 25.0 33 0.0011 29.0 2.1 44 19-67 30-75 (98)
166 2ro1_A Transcription intermedi 25.0 30 0.001 32.3 2.0 45 17-68 2-49 (189)
167 2kdx_A HYPA, hydrogenase/ureas 24.9 16 0.00054 31.7 0.1 31 35-72 72-103 (119)
168 1wyh_A SLIM 2, skeletal muscle 24.6 50 0.0017 25.0 2.9 14 16-29 4-17 (72)
169 1j2o_A FLIN2, fusion of rhombo 24.6 72 0.0025 26.8 4.2 9 44-52 53-61 (114)
170 2nxv_A ATP synthase subunits r 24.6 79 0.0027 29.5 4.9 43 348-396 15-58 (249)
171 2d8x_A Protein pinch; LIM doma 24.4 72 0.0025 24.1 3.8 12 17-28 5-16 (70)
172 3e2i_A Thymidine kinase; Zn-bi 24.4 5.7 0.00019 38.7 -3.2 35 18-52 163-208 (219)
173 2yql_A PHD finger protein 21A; 24.3 16 0.00053 27.7 -0.1 45 15-66 7-54 (56)
174 1wee_A PHD finger family prote 24.3 27 0.00091 27.7 1.3 49 17-69 16-67 (72)
175 2d8z_A Four and A half LIM dom 24.2 54 0.0019 24.7 3.0 13 16-28 4-16 (70)
176 2bay_A PRE-mRNA splicing facto 23.7 50 0.0017 25.4 2.7 46 18-70 4-49 (61)
177 1w7p_D VPS36P, YLR417W; ESCRT- 23.5 17 0.00058 40.0 0.0 30 17-46 117-150 (566)
178 1wep_A PHF8; structural genomi 23.2 84 0.0029 25.2 4.1 49 16-68 11-63 (79)
179 1e7l_A GP49, recombination end 22.9 36 0.0012 31.8 2.0 41 14-54 17-65 (157)
180 2con_A RUH-035 protein, NIN on 22.9 13 0.00046 31.0 -0.7 22 47-68 18-39 (79)
181 2dar_A PDZ and LIM domain prot 22.7 62 0.0021 25.9 3.2 14 14-27 22-35 (90)
182 1x64_A Alpha-actinin-2 associa 22.1 50 0.0017 26.4 2.5 29 17-45 25-60 (89)
183 2ri7_A Nucleosome-remodeling f 22.0 20 0.00068 32.5 0.2 53 13-69 4-60 (174)
184 2lcq_A Putative toxin VAPC6; P 21.9 13 0.00043 33.7 -1.2 13 60-72 149-161 (165)
185 3gox_A Restriction endonucleas 21.7 35 0.0012 33.0 1.7 32 19-50 139-174 (200)
186 2iyb_E Testin, TESS, TES; LIM 21.6 25 0.00084 26.7 0.6 10 19-28 4-13 (65)
187 1k81_A EIF-2-beta, probable tr 20.9 23 0.00078 25.2 0.2 26 19-44 2-29 (36)
188 2fy7_A Beta-1,4-galactosyltran 20.9 46 0.0016 32.7 2.5 40 348-393 64-106 (287)
189 2cu8_A Cysteine-rich protein 2 20.9 39 0.0013 26.1 1.6 30 16-45 8-45 (76)
190 3cw2_K Translation initiation 20.6 43 0.0015 30.5 2.0 27 18-44 104-132 (139)
191 6rxn_A Rubredoxin; electron tr 20.5 23 0.00077 26.7 0.1 9 60-68 31-39 (46)
192 3ebr_A Uncharacterized RMLC-li 20.2 50 0.0017 30.0 2.4 36 387-426 119-154 (159)
193 1wfl_A Zinc finger protein 216 20.1 91 0.0031 25.8 3.7 27 16-48 24-50 (74)
194 1pft_A TFIIB, PFTFIIBN; N-term 20.1 56 0.0019 23.9 2.3 15 56-70 21-35 (50)
No 1
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=6.5e-48 Score=327.66 Aligned_cols=90 Identities=60% Similarity=1.279 Sum_probs=85.4
Q ss_pred CCCCCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCC
Q 009093 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (544)
Q Consensus 3 ~~~~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~ 82 (544)
|.|.+++|||+++++||||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD- 80 (93)
T 1weo_A 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD- 80 (93)
T ss_dssp CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred CCCCCCCCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCcccc-
Confidence 4577789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCC
Q 009093 83 EEDGDADDGAS 93 (544)
Q Consensus 83 e~e~~~dd~~~ 93 (544)
|+|+++||+++
T Consensus 81 e~e~d~dD~~~ 91 (93)
T 1weo_A 81 EDEEDIDSGPS 91 (93)
T ss_dssp CCCCCSCCCCS
T ss_pred ccccccccccc
Confidence 67788899864
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.51 E-value=5.9e-14 Score=156.77 Aligned_cols=141 Identities=18% Similarity=0.295 Sum_probs=112.9
Q ss_pred hhHHH-HHHHHHHHHHHhhhhccCCCCc-----hhHHHHHHHHHHHHHHHHHHHhhcccceecccchhhhhhhhhhhccC
Q 009093 270 PYRMV-IFLRLIILGIFLYYRIKNPVHN-----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREG 343 (544)
Q Consensus 270 ~yRll-ivl~lv~l~~Yl~WRit~p~~d-----a~~lWl~l~iaEl~f~~~wlL~q~~kw~Pv~R~t~~drL~~r~e~~~ 343 (544)
+.|++ +++.+++.++|++||++.+.+. .+++|++++++|+++.+.|+++++..|+|+.|.+.++.
T Consensus 64 ~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~--------- 134 (802)
T 4hg6_A 64 VPRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL--------- 134 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---------
T ss_pred chHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---------
Confidence 35665 5555567788999999986552 24678889999999999999999999999998876532
Q ss_pred CCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHH----HHHHHH-HHHHhhHHHHHH
Q 009093 344 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE----ALSETS-EFARKWVPFCKK 418 (544)
Q Consensus 344 ~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~----al~Eaa-~FAr~WvPFCkk 418 (544)
.++++|.|+|+|||| ||++.++.+|+.|+++.+||.+++.|+|.|||.++-|.+ ++.+.. +-......+|++
T Consensus 135 ~~~~~P~VSViIPty---Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~ 211 (802)
T 4hg6_A 135 QPEELPTVDILVPSY---NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRE 211 (802)
T ss_dssp CTTTCCCEEEEEECT---TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCcEEEEEEEC---CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHh
Confidence 346799999999999 999999999999999999999999999999999999874 232222 223334578888
Q ss_pred cCCC
Q 009093 419 YNIE 422 (544)
Q Consensus 419 ~~Ie 422 (544)
+++.
T Consensus 212 ~~v~ 215 (802)
T 4hg6_A 212 LGVV 215 (802)
T ss_dssp HTCE
T ss_pred cCcE
Confidence 8764
No 3
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.17 E-value=0.00036 Score=57.39 Aligned_cols=53 Identities=30% Similarity=0.829 Sum_probs=43.2
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
....|.||-+.+.+ +.-.|.+| .||.-.|+.|+.--.++++..||.|+.+|..
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34589999997643 23468889 9999999999986666788999999999974
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=96.46 E-value=0.0023 Score=65.97 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=49.4
Q ss_pred CCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcch-hhHHHHHH
Q 009093 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM-LTFEALSE 404 (544)
Q Consensus 345 ~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~-ltf~al~E 404 (544)
+..+|.|.|.|+|| ||+...+..||.|+++..||...+.|+|.|||.+. -|.+.|.+
T Consensus 25 ~~~~p~vSVIIp~y---N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~ 82 (472)
T 1xhb_A 25 PDNLPTTSVVIVFH---NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES 82 (472)
T ss_dssp CSCCCCEEEEEEES---SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH
T ss_pred CcCCCCeEEEEEeC---CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH
Confidence 46799999999999 99988999999999999999767899999999987 36665544
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=96.11 E-value=0.0069 Score=55.43 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=45.2
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
..|.|.|+|+|| |++ ..+..+|.|+++-.|| .+.|+|.|||.+.-|.+.+.+
T Consensus 3 ~~p~vsViIp~y---n~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~ 54 (240)
T 3bcv_A 3 LIPKVSVIVPIY---NVE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD 54 (240)
T ss_dssp CCCSEEEEEEES---SCT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH
T ss_pred CCCcEEEEEecC---CCH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH
Confidence 468999999999 776 7889999999999998 589999999999888766554
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=96.03 E-value=0.0049 Score=64.42 Aligned_cols=54 Identities=20% Similarity=0.105 Sum_probs=47.8
Q ss_pred CCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHH
Q 009093 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEA 401 (544)
Q Consensus 345 ~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~a 401 (544)
+..+|.|.|+|+|| ||....+..||.|+++..||...+.|+|.|||.+.-|...
T Consensus 62 ~~~~p~vSVIIp~y---N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~ 115 (501)
T 2ffu_A 62 RVDLPATSVVITFH---NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGA 115 (501)
T ss_dssp CSSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHH
T ss_pred CcCCCCEEEEEEeC---cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHH
Confidence 45799999999999 9988789999999999999876679999999999887644
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=95.81 E-value=0.0061 Score=65.46 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=47.8
Q ss_pred CCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhh-HHHHH
Q 009093 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALS 403 (544)
Q Consensus 346 s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~lt-f~al~ 403 (544)
+.+|.|.|+|+|| ||....+..||.|+++..||...+.|+|.|||.+.-| .+.|.
T Consensus 109 ~~~P~vSVIIp~y---Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~ 164 (570)
T 2d7i_A 109 ETLPNTSIIIPFH---NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE 164 (570)
T ss_dssp SSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH
T ss_pred CCCCCeEEEEEEC---CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHH
Confidence 5689999999999 8988899999999999999975669999999999888 44443
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.80 E-value=0.0075 Score=55.82 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=43.0
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
|.|.|.|||| |++ ..+..||.|+++-.|| .+.|+|.|||.+.-|.+.+.+
T Consensus 1 p~vSViIp~y---n~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~ 50 (255)
T 1qg8_A 1 PKVSVIMTSY---NKS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP 50 (255)
T ss_dssp CCEEEEEEES---SCT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG
T ss_pred CeEEEEEEcC---CCH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH
Confidence 6799999999 776 7899999999999998 589999999999877665443
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.17 E-value=0.014 Score=62.17 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=43.9
Q ss_pred CCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHH
Q 009093 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (544)
Q Consensus 345 ~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~ 400 (544)
+..+|.|.|+|+|| ||+ ..+..|+.|+++.+||. .+.|+|.|||.+.-|.+
T Consensus 89 ~~~~p~vsviIp~~---n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~ 139 (625)
T 2z86_A 89 QLIIDGLSIVIPTY---NRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEE 139 (625)
T ss_dssp -CCCCCEEEEEEES---SCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHH
T ss_pred cccCCcEEEEEecC---CcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHH
Confidence 35689999999999 885 78899999999999886 79999999999876654
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=94.00 E-value=0.048 Score=54.00 Aligned_cols=53 Identities=13% Similarity=-0.026 Sum_probs=44.6
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
.-|.|.|.|||| ||. ..+..+|.|+++..|| ..+.|+|.|||.++-|.+-+.+
T Consensus 46 ~~~~vSViIp~y---N~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~~~~~ 98 (329)
T 3ckj_A 46 AGRTISVVLPAL---DEE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEIRAVA 98 (329)
T ss_dssp TTCCEEEEEEES---SCT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHHHHHH
T ss_pred cCCcEEEEEeeC---CCH-HHHHHHHHHHHHhhCC-CCcEEEEEeCCCCchHHHHHHH
Confidence 468899999999 766 5789999999999998 4578999999999888765544
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=92.67 E-value=0.051 Score=41.89 Aligned_cols=55 Identities=27% Similarity=0.684 Sum_probs=40.5
Q ss_pred ccCCCcccccCCCcccCC-CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 14 NVGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
......|.||-+.+.-.. +|+..+.- .|+--.|+.|..--.+ .+..||.|++++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK-NANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHH-cCCCCCCCCCccC
Confidence 345668999999976543 45554444 8999999999964444 3479999999886
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.63 E-value=0.13 Score=39.10 Aligned_cols=54 Identities=28% Similarity=0.713 Sum_probs=39.4
Q ss_pred cCCCcccccCCCcccCC-CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.....|.||-+.+.-.. .++.++.- .|+--.|+.|..--.+. +..||-|++++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 34568999999865443 34444444 78999999999744443 689999999875
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=91.62 E-value=0.14 Score=40.42 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-.|.||.+... ++.+. .||.-.|+.|.+--.+.|+..||.|++++.
T Consensus 8 ~~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 458999998642 34443 699999999998777777899999999885
No 14
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.56 E-value=0.17 Score=39.61 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=36.0
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCC---CcchhhHHHHHh-cCCCCCCCCccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~F---PVCRpCYeyErk-eG~q~CPqCKTrYK 70 (544)
.+.+|.||-++ .++++..+| .|.= -|=+.|..-=++ .++..||.||++|.
T Consensus 5 ~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45699999876 234577888 6643 455678764454 46899999999996
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=91.43 E-value=0.36 Score=37.06 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=36.8
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 12 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEE---GEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCS---SSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccC---CCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 345689999998643 3333333 58888999999633333 46799999988643
No 16
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=91.38 E-value=0.15 Score=46.14 Aligned_cols=46 Identities=28% Similarity=0.759 Sum_probs=37.2
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.|.||-+.+. ++ |.+..||--.|+.|.+--.+.++..||.|++++.
T Consensus 56 ~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp BCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 8999988753 23 3334799999999998777777899999999985
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=91.38 E-value=0.56 Score=36.87 Aligned_cols=53 Identities=19% Similarity=0.470 Sum_probs=37.3
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--. ..+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWL-EQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHH-TTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHH-HcCCcCcCcCCccCCc
Confidence 345699999998643 2333322 488889999996333 4558999999998643
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.36 E-value=0.18 Score=38.58 Aligned_cols=53 Identities=25% Similarity=0.587 Sum_probs=37.1
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
...|.||-+++-.+. -..++.- .||--.|+.|.+--...++..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~-~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNP-SLKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCS-SCCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCC-ccCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 458999988432222 1223333 7899999999975446677899999999974
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=91.15 E-value=0.083 Score=39.64 Aligned_cols=52 Identities=27% Similarity=0.689 Sum_probs=38.5
Q ss_pred CCcccccCCCcccCC-CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
...|.||-+.+.-.. .++..+.- .|+--.|+.|.+--.+. +..||.|++++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCC
Confidence 458999999865543 34444444 78999999999744433 789999999986
No 20
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=91.13 E-value=0.19 Score=53.60 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=45.5
Q ss_pred CCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 346 s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
...|.|.|.|+|| |++ ..+..||.|+++-.|| .+.|+|.|||.+.-|.+-+.+
T Consensus 372 ~~~~~vsiii~~y---n~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~ 424 (625)
T 2z86_A 372 KRVPLVSIYIPAY---NCS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE 424 (625)
T ss_dssp CSSCSEEEEEEES---SCT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH
T ss_pred ccCCeEEEEEeCC---CCH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHH
Confidence 3578999999999 774 7889999999999998 489999999999888776554
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.05 E-value=0.28 Score=40.30 Aligned_cols=56 Identities=20% Similarity=0.465 Sum_probs=39.9
Q ss_pred cccCCCcccccCCCcccCCCCCceeecCCCC---CCcchhhHHHHHhc-CCCCCCCCcccccc
Q 009093 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCA---FPVCRPCYEYERKD-GNQSCPQCKTRYKK 71 (544)
Q Consensus 13 ~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~---FPVCRpCYeyErke-G~q~CPqCKTrYKR 71 (544)
.......|.||-++.. +++.+..+| .|. --+.+.|-+-=.+. ++..||.|++.|.-
T Consensus 11 ~~~~~~~C~IC~~~~~--~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGD--DESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCC--SSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCcccc--CCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3445679999988743 344566778 563 67999999644444 44799999999963
No 22
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=90.96 E-value=0.32 Score=35.61 Aligned_cols=50 Identities=18% Similarity=0.474 Sum_probs=35.8
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrY 69 (544)
....|.||-+.+.. |+..+....|+--.|+.|.. ..-..+..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~-~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECVD-MWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHH-HTTTTCCSCSSSCCCS
T ss_pred CCCcCccCCccccC---CCceEECCCCCCcccHHHHH-HHHHcCCcCcCCCCEe
Confidence 34589999998743 33334443588889999996 4334578999999875
No 23
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=90.51 E-value=0.34 Score=35.38 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=35.8
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrY 69 (544)
....|.||-+.+... ++. +..-.|+--.|+.|..--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~~--~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS--RVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT--TSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcCC--CcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 456899999986432 233 3333689999999997545554 8999999875
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.30 E-value=0.25 Score=38.22 Aligned_cols=49 Identities=31% Similarity=0.633 Sum_probs=36.2
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh--cCCCCCCCCcccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK--DGNQSCPQCKTRYKK 71 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk--eG~q~CPqCKTrYKR 71 (544)
....|.||-+.+. ++.+ . .|+--.|+.|..--.+ .++..||.|++++..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3458999998754 2322 2 7899999999975444 356799999999863
No 25
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=89.88 E-value=0.22 Score=51.49 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=41.4
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHHhhcC--CCCCCCceEEEcCCCcchhhHHHHHH
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAV--DYPVDKVSCYVSDDGAAMLTFEALSE 404 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~--DYP~dKlsVYVsDDGgs~ltf~al~E 404 (544)
.|.|.|+|||| ||. ..+..+|.++++. +||. .+.|+|.|||.++-|.+-+.+
T Consensus 93 ~p~vSVVIP~y---Ne~-~~l~~~l~sl~~~l~~~~~-~~EIIVVDDgStD~T~~i~~~ 146 (387)
T 3f1y_A 93 GLTVSAVLPSR---NVA-DTVGGIIDEIHALNERAPL-IDQILVVDADSEDGTAGVAAS 146 (387)
T ss_dssp TCCEEEEEEES---SCT-TTHHHHHHHHHHHHHHSCC-CSEEEEEECSCSSSHHHHHHH
T ss_pred CCeEEEEEEcC---CCH-HHHHHHHHHHHHHHhcCCC-CeEEEEEcCcCCccHHHHHHH
Confidence 68999999999 885 5677778787763 6764 378999999999988775544
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=89.56 E-value=0.27 Score=42.36 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=35.6
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
-.|.||-+.+- ++.+ - .||--.|+.|..--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPIT-T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEE-e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999998754 2322 2 6899999999975566566699999999963
No 27
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=89.13 E-value=0.4 Score=40.39 Aligned_cols=60 Identities=23% Similarity=0.433 Sum_probs=41.8
Q ss_pred CCCcccccCCCcccCC-----------CCCceeecCCCCCCcchhhHHHHHh----cCCCCCCCCcccccccCCC
Q 009093 16 GGQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRYKKHKGS 75 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~-----------~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCKTrYKR~kgs 75 (544)
....|.||-+.+...+ +-..++..-.|+=-.|+.|..--.+ ..+..||-|++.|...+|.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 3468999998875432 1123444557888999999974444 4567999999999755543
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.64 E-value=0.34 Score=37.12 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=36.6
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
...|.||.+.+. ++.+ -.||--.|+.|..--.+.++..||.|++++..
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 458999998753 2222 26888899999986666677899999999863
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.49 E-value=0.91 Score=35.54 Aligned_cols=47 Identities=30% Similarity=0.826 Sum_probs=34.8
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc-----CCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke-----G~q~CPqCKTrYK 70 (544)
...|.||-+.+.- +.+ . .|+--.|+.|..--.+. +...||.|++++.
T Consensus 19 ~~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PLS-L-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSS-----CBC-C-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCC-----cee-C-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4599999988632 222 2 68999999999744333 5789999999986
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.43 E-value=0.55 Score=37.39 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=36.8
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcC--CCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDG--NQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG--~q~CPqCKTrYK 70 (544)
...|.||-+....+ ....+.- .|+--.|+.|..--.+.. ...||.|++.+.
T Consensus 15 ~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 15 VLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 45899999886432 2223444 689999999997554443 589999999986
No 31
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=87.91 E-value=0.35 Score=46.02 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=36.4
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.--+|.||.+-. . ++.+. .||.-.||.|-+--.+.+...||.|++++.
T Consensus 207 ~~~~c~i~~~~~-~----dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM-R----EPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC-S----SEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh-c----CCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 445899998752 2 35443 489999999998667776677999999885
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.54 E-value=1.2 Score=34.80 Aligned_cols=47 Identities=30% Similarity=0.825 Sum_probs=34.9
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc-----CCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke-----G~q~CPqCKTrYK 70 (544)
...|.||-+.+.- + +.. .|+--.|+.|..--.+. +...||.|++++.
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4589999987532 2 223 58899999999754444 4789999999986
No 33
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=87.10 E-value=0.12 Score=56.84 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHH
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Ea 405 (544)
|.|.|.|||| |++ ..+..||.|+++-+|| .+-|+|.|||.+.-|.+-+.+.
T Consensus 2 p~vSVIIp~y---N~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~ 52 (729)
T 3l7i_A 2 NKLTIIVTYY---NAE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA 52 (729)
T ss_dssp ---------------------------------------------------------
T ss_pred ceEEEEEEcC---CCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHH
Confidence 7799999999 776 6789999999999999 5889999999998888766553
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=86.75 E-value=0.59 Score=39.06 Aligned_cols=47 Identities=21% Similarity=0.565 Sum_probs=37.4
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-.|.||-+.+- .-|.|-.||--.|+.|..--.+.....||.|++++.
T Consensus 23 ~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 48999999863 235566899999999997556665579999999985
No 35
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=86.70 E-value=0.62 Score=39.91 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=35.6
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-.|.||.+.+- ++ |.. .|+--.|+.|..--.+.++..||.|++++.
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 38999997753 23 334 699999999997666666669999998886
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=86.66 E-value=0.47 Score=44.87 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=35.5
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-+|.||++- +. ++.+. .||+-.||.|-+--...+...||.|++++.
T Consensus 107 f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 107 LCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 489999874 33 46666 499999999998666664457999999885
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=85.58 E-value=0.75 Score=37.92 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=34.1
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
..|.||.+...- +.+ ...||--.|+.|..--. ..+..||.|++++.
T Consensus 23 ~~C~IC~~~~~~-----p~~-~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMI-IPQCSHNYCSLCIRKFL-SYKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSS-----EEE-CTTTCCEEEHHHHHHHH-TTCCBCTTTCCBCC
T ss_pred CCcccCChhhCC-----cCE-ECCCCCHhhHHHHHHHH-HCCCCCCCCCCcCC
Confidence 489999987532 322 23689999999996444 45689999999986
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=85.50 E-value=0.34 Score=41.13 Aligned_cols=46 Identities=26% Similarity=0.779 Sum_probs=35.5
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-.|.||-+.+- ++.+. .||--.|+.|..--.+.++..||.|++.+.
T Consensus 16 ~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 47999998753 23332 689999999997555566789999999986
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=85.02 E-value=1.1 Score=34.08 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=34.7
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
...|.||-+.+.- .. ..-.|+--.|+.|..--. ..+..||-|++++...
T Consensus 5 ~~~C~IC~~~~~~-----~~-~~~~C~H~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPSN-----YS-MALPCLHAFCYVCITRWI-RQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCCS-----CE-EETTTTEEESTTHHHHHH-HHSCSTTTTCCCCCCE
T ss_pred CCCCeeCCccccC-----Cc-EecCCCCeeHHHHHHHHH-hCcCcCcCCChhhHhh
Confidence 5589999998532 11 223578889999996433 3458999999998743
No 40
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.42 E-value=1.7 Score=33.70 Aligned_cols=49 Identities=18% Similarity=0.484 Sum_probs=35.2
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
...|.||-+.+-- +. ....|+--.|+.|..--.+. +..||.|++++...
T Consensus 15 ~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999876432 22 22367888899999755444 68999999999743
No 41
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.73 E-value=2 Score=33.32 Aligned_cols=51 Identities=18% Similarity=0.464 Sum_probs=36.5
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
....|.||-+.+.. ++..+.. .|+--.|+.|..--.+. +..||-|++++..
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 35689999998643 3334433 58888999999643443 4699999998863
No 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.71 E-value=0.64 Score=36.42 Aligned_cols=52 Identities=17% Similarity=0.416 Sum_probs=36.8
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
....|.||-+++.. ++..+.- .|+--.|+.|..--.+ .+..||-|+.++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 45689999988643 3433333 5888899999964343 357999999988644
No 43
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.99 E-value=1.5 Score=35.25 Aligned_cols=56 Identities=21% Similarity=0.430 Sum_probs=39.2
Q ss_pred cCCCcccccCCCcccC--------CCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 15 VGGQVCQICGDNVGKT--------VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt--------~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
.....|.||-+++.-. ..++..+.-..|+=--|+.|.. +--..++.||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMS-LWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHH-HHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHH-HHHHhCCCCCCcCCCcch
Confidence 4566899999997542 2344333333789899999996 433455799999998863
No 44
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=81.97 E-value=1.1 Score=46.06 Aligned_cols=46 Identities=20% Similarity=0.162 Sum_probs=38.9
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhh
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~lt 398 (544)
|+.+=|.|.|| |-| . +..|+-|+++...+.++.-|+|+|||....|
T Consensus 1 ~~~~pViI~~y---NRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~ 46 (343)
T 1fo8_A 1 LAVIPILVIAC---DRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEET 46 (343)
T ss_dssp CCCCCEEEEES---SCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHH
T ss_pred CCcccEEEEEC---CcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHH
Confidence 34567899999 888 5 9999999999997778889999999986444
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=81.91 E-value=1.1 Score=40.41 Aligned_cols=46 Identities=28% Similarity=0.639 Sum_probs=35.3
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
..|.||-+.+- ++.+ -.|+--.|+.|..--.+.++..||.|++++.
T Consensus 79 ~~C~IC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCS-----SEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhc-----CCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 48999988642 2333 2789999999997666666668999999986
No 46
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=81.50 E-value=1.1 Score=40.52 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=36.6
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-.|.||.+.+- ++ |.+ .||--.|+.|..--.+.++..||.|++++.
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 38999998743 23 446 799999999998766776679999998875
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=81.28 E-value=1 Score=36.88 Aligned_cols=46 Identities=7% Similarity=-0.104 Sum_probs=34.6
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-+|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 14 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 14 EFRDPLMDTL-MT----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred heECcccCch-hc----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 4589999864 32 35444 3899999999975555 4689999999885
No 48
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=81.22 E-value=1.1 Score=39.32 Aligned_cols=44 Identities=30% Similarity=0.678 Sum_probs=32.4
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.|.||-+..- ++ |.. .||--.|+.|.. +.-..+..||.|+++.+
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~-~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCIN-EWMKRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHH-HHTTTCSBCTTTCCBCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHH-HHHHcCCcCCCCCCcCC
Confidence 6999998752 22 223 588899999986 43445688999999885
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=81.12 E-value=1 Score=38.17 Aligned_cols=46 Identities=7% Similarity=-0.109 Sum_probs=34.7
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-+|.||++- +. ++.+.- ||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 29 ~~~CpI~~~~-m~----dPV~~~--cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTL-MT----DPVRLP--SGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSB-CS----SEEEET--TTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred hhCCcCccCc-cc----CCeECC--CCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 4589999764 33 354443 899999999975554 5789999999885
No 50
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.65 E-value=3.3 Score=31.09 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=31.4
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc--CCCCCCCC
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQC 65 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke--G~q~CPqC 65 (544)
....|.||-+.+- ++.+. .|+--.|+.|..--.+. ++..||.|
T Consensus 19 ~~~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3458999998754 23332 78999999999755553 56789988
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=80.62 E-value=1.1 Score=36.85 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=35.8
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
...|.||-+.+.. |+..+.. .|+=-.|+.|.. ..-..+..||-|+.++.
T Consensus 40 ~~~C~IC~~~~~~---~~~~~~l-~C~H~Fh~~Ci~-~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYVK---GDVATEL-PCHHYFHKPCVS-IWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTEECCT---TCEEEEE-TTTEEEEHHHHH-HHHTTTCBCTTTCCBSS
T ss_pred CCCCcccChhhcC---CCcEEec-CCCChHHHHHHH-HHHHcCCcCcCcCccCC
Confidence 4479999988643 4554444 488889999986 44456689999998764
No 52
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.35 E-value=1.5 Score=36.36 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=33.1
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc--CCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke--G~q~CPqCKTrYK 70 (544)
..|.||-+.+- ++.+ . .||--.|+.|..--.+. +...||.|++++.
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 48999998652 2222 2 68999999999754443 3468999999886
No 53
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=80.11 E-value=0.28 Score=45.39 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=41.9
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
+...|.+|+...|+- +..-+.|..|...||+-|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 567999999998887 345799999999999999988777777777766543
No 54
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=79.95 E-value=2 Score=34.70 Aligned_cols=48 Identities=23% Similarity=0.594 Sum_probs=34.1
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh-cCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk-eG~q~CPqCKTrYK 70 (544)
.-.|.||.+..- ++.+ ...||--.|+.|.+--.+ .+...||.|++++.
T Consensus 13 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999997642 2322 223899999999964443 35579999999874
No 55
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.50 E-value=3.3 Score=32.72 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=34.3
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
...|.||-+.+- ++.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQ-----NPVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCC-----SEEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhc-----CeeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 458999988862 2333 26888899999974443 4689999999885
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=79.49 E-value=1.6 Score=36.58 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=34.6
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-.|.||.+.+- ++.+ ...||--.|+.|..--.+ .+..||.|++.+.
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLE-TSKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSC
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHH-hCCcCcCCCcccc
Confidence 348999988752 2333 236899999999964444 4589999999886
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.04 E-value=1.4 Score=37.62 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=33.3
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-.|.||.+... ++.+.. .||--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 458999987752 344433 6899999999964333 78999999985
No 58
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.95 E-value=1.7 Score=33.67 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=34.4
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.....|.||-+.+.- -+++ .|+--.|+.|..--. ..+..||-|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~---~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVH----PVSL---PCKHVFCYLCVKGAS-WLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSS----EEEE---TTTEEEEHHHHHHCT-TCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCC----CEEc---cCCCHHHHHHHHHHH-HCCCcCcCcCchhC
Confidence 455689999987522 1233 478889999996333 34489999999986
No 59
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=78.38 E-value=0.85 Score=50.36 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=39.4
Q ss_pred CCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCc-eEEEcCCCcch
Q 009093 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKV-SCYVSDDGAAM 396 (544)
Q Consensus 347 ~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKl-sVYVsDDGgs~ 396 (544)
.-|.|-|.|+|| |++ ..+.++|.|+++-.|+.++. .|+|.|||.+.
T Consensus 178 ~~pkVSVVIptY---N~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 178 GTANIAVGIPTF---NRP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp SCCCEEEECCBS---SCH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCeEEEEEEec---CCH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 468999999999 765 58899999999998866655 89999999975
No 60
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=78.07 E-value=1.9 Score=36.44 Aligned_cols=47 Identities=28% Similarity=0.551 Sum_probs=36.2
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
-.|.||.+.+- ++.+ . .||--.|+.|..--.+.++..||.|++++..
T Consensus 24 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 48999988752 2333 3 7899999999976666667899999999863
No 61
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=77.08 E-value=2.5 Score=33.06 Aligned_cols=49 Identities=22% Similarity=0.597 Sum_probs=34.8
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc-CCCCCCCCcccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-GNQSCPQCKTRYKK 71 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke-G~q~CPqCKTrYKR 71 (544)
...|.||-+.+- ++.+ -..|+--.|+.|..--.+. +...||.|++++.+
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 358999987653 2322 3348999999999755543 44799999997653
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=76.93 E-value=0.98 Score=38.18 Aligned_cols=54 Identities=26% Similarity=0.683 Sum_probs=39.6
Q ss_pred cCCCcccccCCCcccC-CCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKT-VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt-~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.+...|.||-+.+.-. +.+..-+.+ .|+-..|..|..--.+. +..||.|++.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCC
Confidence 4456899998876543 245555555 89999999999744444 579999999986
No 63
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=76.55 E-value=1.9 Score=36.40 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=34.2
Q ss_pred CCcccccCCCcccCCCCCceeecCCCC-CCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~-FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.-+|.||++- +. ++.+. .|| .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4489999864 33 34443 478 99999999755554 689999999885
No 64
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.17 E-value=2.1 Score=32.76 Aligned_cols=48 Identities=25% Similarity=0.693 Sum_probs=35.6
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
....|.||-+...- .+. .|+--.|+.|.. ..-..+..||.|++++...
T Consensus 14 ~~~~C~IC~~~~~~-----~~~---~CgH~fc~~Ci~-~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LIL---PCAHSFCQKCID-KWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEE---TTTEEECHHHHH-HSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----ccc---CCCCcccHHHHH-HHHHCcCcCCCcCCcccCC
Confidence 34689999987432 444 467778999996 4445789999999998743
No 65
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=76.16 E-value=0.81 Score=35.72 Aligned_cols=47 Identities=32% Similarity=0.832 Sum_probs=33.9
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc------CCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD------GNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke------G~q~CPqCKTrYK 70 (544)
...|.||-+...- +.+ . .||--.|+.|..--.+. +...||.|++++.
T Consensus 12 ~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4589999987521 222 2 68999999999743333 3679999999986
No 66
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=75.00 E-value=1.7 Score=39.30 Aligned_cols=38 Identities=29% Similarity=0.640 Sum_probs=30.4
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY 53 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey 53 (544)
+.+...|.+|+...|+-. ..-+.|..|...||+-|-.+
T Consensus 52 ~~~~~~C~~C~~~~g~l~--~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLG--SASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SCSSSBCSSSCCBCSTTS--CCEEECTTTCCEEETTSEEE
T ss_pred cCCCccccccCCCccccc--CCCCCCCCCCcccccccCCc
Confidence 346679999999998653 23389999999999999864
No 67
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=74.23 E-value=1.5 Score=33.97 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=35.0
Q ss_pred cccCCCcccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCccccc
Q 009093 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 13 ~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
.......|.||-|...- -+|+.- .||-- .|..|.. .....+..||-|+.+..
T Consensus 4 ~~~~~~~C~IC~~~~~~----~~~~~~-pCgH~~~C~~C~~-~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKN----GCIVHG-KTGHLMACFTCAK-KLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp -CGGGSCCTTTSSSCSC----EEEEET-TEEEEEECHHHHH-HHHHTTCCCTTTCCCCC
T ss_pred CCCCcCCCCcCCCCCCC----EEEECC-CCCChhhHHHHHH-HHHHcCCcCCCcCcchh
Confidence 34456689999986322 145511 34666 6999997 44556689999999875
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.99 E-value=2.7 Score=33.09 Aligned_cols=45 Identities=22% Similarity=0.679 Sum_probs=32.4
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCcccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
.....|.||-+..- --+|++| +=- +|..|..- .+.||-|+++...
T Consensus 13 ~~~~~C~IC~~~~~----~~v~~pC---gH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV----NWVLLPC---RHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC----CCEETTT---TBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC----CEEEECC---CChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 34678999988632 2356666 444 89999972 4899999998863
No 69
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=72.91 E-value=1.7 Score=46.80 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=31.3
Q ss_pred ccCCCcccccCCCc-ccCCCCCceeecCCCCCCcchhhHHH
Q 009093 14 NVGGQVCQICGDNV-GKTVDGNPFVACDVCAFPVCRPCYEY 53 (544)
Q Consensus 14 ~~~gqiCqICGD~V-Glt~~Ge~FVAC~EC~FPVCRpCYey 53 (544)
-.....|.+|++-+ |+.-.| ..|..|+|.||+-|...
T Consensus 526 ~~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 526 FEETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp CSSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 35567999999997 887655 78999999999999974
No 70
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=72.06 E-value=4.1 Score=35.05 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=37.4
Q ss_pred cCCCcccccCCCcccC----------CCCC-ceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKT----------VDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt----------~~Ge-~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
+....|.||-+.+... ..|+ .-+.--.|+---++.|.. .--..+..||-|+..|+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH-HHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHH-HHHHcCCcCcCCCCcce
Confidence 3456899999887643 1122 122223789999999985 54455799999999964
No 71
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=71.18 E-value=1.7 Score=36.74 Aligned_cols=54 Identities=26% Similarity=0.695 Sum_probs=39.3
Q ss_pred CCCcccccCCCcccCC-CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 16 GGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
+.-.|.||-+...-.. +|+..+.- .||--.|+.|..--. ..+..||.|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSL-KNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHH-TTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHH-HhCCCCCCCCCcCcc
Confidence 3458999999865432 35544554 889999999996444 445799999999864
No 72
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=69.47 E-value=3.2 Score=43.63 Aligned_cols=47 Identities=28% Similarity=0.688 Sum_probs=33.4
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
..|.||-+..-- -++. .||=-.|..|..--.+.....||-|+++...
T Consensus 333 ~~C~ICle~~~~----pv~l---pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKD----VKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCC----EEEE---TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCC----eEEe---CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 589999877511 1233 4566669999964444477999999998864
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=69.23 E-value=3 Score=36.48 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=34.2
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
+.|.+|+-.|-.- | -..-|.=-.|-.|+..-.+++.+.||.|+.+..|.
T Consensus 2 hfC~~C~~Pi~iy--g----RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 2 HFCDKCGLPIKVY--G----RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp CBCTTTCSBCSEE--E----EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred eecCccCCCeEEE--e----eeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 3566676664332 2 22234446799999766788999999999999876
No 74
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.07 E-value=4.2 Score=30.37 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=32.5
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~ 72 (544)
...|.||.+..-- -... .|+--.|+.|..- ....||.|++.....
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 4579999887532 1223 4788889999753 678999999998754
No 75
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=67.67 E-value=2.8 Score=42.65 Aligned_cols=37 Identities=22% Similarity=0.492 Sum_probs=30.7
Q ss_pred cccCCCcccccCCCc-ccCCCCCceeecCCCCCCcchhhHH
Q 009093 13 KNVGGQVCQICGDNV-GKTVDGNPFVACDVCAFPVCRPCYE 52 (544)
Q Consensus 13 ~~~~gqiCqICGD~V-Glt~~Ge~FVAC~EC~FPVCRpCYe 52 (544)
.......|..|+.-+ |+.-.| ..|..|++.||+.|..
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred cCCCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 345667999999998 776555 6799999999999996
No 76
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.41 E-value=3.4 Score=32.54 Aligned_cols=42 Identities=33% Similarity=0.732 Sum_probs=30.0
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCcccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
..|.||-+..-- -+|++ ||-- .|+.|.. ....||-|+++...
T Consensus 26 ~~C~IC~~~~~~----~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA----IVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC----BCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC----EEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 479999876311 23554 5777 7999984 23889999998863
No 77
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=65.23 E-value=3.7 Score=33.07 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=23.2
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPV 46 (544)
.-.-+|--||-++.+... .-+-|.+||+.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 345699999999998853 338899999876
No 78
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=64.94 E-value=1.9 Score=38.63 Aligned_cols=45 Identities=22% Similarity=0.583 Sum_probs=35.7
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrY 69 (544)
-.|.||.+-+- ++ |.. .||--.|+.|..--.+.++..||.|+++.
T Consensus 32 ~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 48999997642 23 334 89999999999877777878999999865
No 79
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=63.47 E-value=1.1 Score=36.43 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHhcCCCCCCCCcccccccCCCCcccCC
Q 009093 53 YERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (544)
Q Consensus 53 yErkeG~q~CPqCKTrYKR~kgsprV~gd 81 (544)
|...+|.-.|+.|+..|--..|-|..--|
T Consensus 22 ~~~~~g~LvC~~c~~~YPI~dGIPvmL~~ 50 (67)
T 2jny_A 22 YLESEQLLVNERLNLAYRIDDGIPVLLID 50 (67)
T ss_dssp EETTTTEEEETTTTEEEEEETTEECCCSS
T ss_pred EeCCCCEEEcCCCCccccCCCCEeeeChh
Confidence 33346777999999999999999988877
No 80
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.50 E-value=15 Score=26.59 Aligned_cols=43 Identities=19% Similarity=0.628 Sum_probs=30.4
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh--cCCCCCCCC
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK--DGNQSCPQC 65 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk--eG~q~CPqC 65 (544)
....|.||-+.+.-. ... .|+--.|+.|..--.+ .++..||.|
T Consensus 14 ~~~~C~IC~~~~~~p----~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP----VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC----CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc----EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345899999886321 222 5788889999974433 377899988
No 81
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.77 E-value=4.7 Score=32.35 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=25.7
Q ss_pred CccccccCCCcccccCCCccc----CCCCCce----eecCCCCCCc
Q 009093 9 VKSIKNVGGQVCQICGDNVGK----TVDGNPF----VACDVCAFPV 46 (544)
Q Consensus 9 ~k~~~~~~gqiCqICGD~VGl----t~~Ge~F----VAC~EC~FPV 46 (544)
.+|.+.....+|..|+..|.. .+.|..| ..|.+|.-++
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBC
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCc
Confidence 466777778899999999863 2344444 3577786554
No 82
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=61.70 E-value=6.2 Score=38.52 Aligned_cols=48 Identities=21% Similarity=0.688 Sum_probs=38.4
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH-HhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCKTrYK 70 (544)
-..|.||-+-|... +.|..|+-..=+.|+.-- +..++..||.|++...
T Consensus 180 i~~C~iC~~iv~~g------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 46899999998752 889889999999999643 3345679999999875
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=60.70 E-value=4 Score=32.54 Aligned_cols=52 Identities=29% Similarity=0.618 Sum_probs=35.7
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHH---hcCCCCCCCCcccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKTRYKK 71 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyEr---keG~q~CPqCKTrYKR 71 (544)
....|.||+.. .+|+..|.|..|.--.=-.|..... .++.-.||.|...-++
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34579999875 3688899999885443345554322 2467899999887654
No 84
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.28 E-value=7 Score=32.56 Aligned_cols=39 Identities=26% Similarity=0.637 Sum_probs=31.9
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE 54 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE 54 (544)
+-+...|..|+..+|+- ++--+.|..|...||+.|-.+.
T Consensus 22 ~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 22 HYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp TCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEEC
T ss_pred CCCccchhhhCcccccc--ccCCCcCcccChhhcccccccC
Confidence 34556999999999987 4455789999999999998654
No 85
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=59.77 E-value=3.7 Score=46.50 Aligned_cols=57 Identities=28% Similarity=0.708 Sum_probs=41.3
Q ss_pred cCCCcccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhHH-HH----Hh--cCCCCCCC
Q 009093 15 VGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCYE-YE----RK--DGNQSCPQ 64 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~---Ge~FVAC~EC~--------------------FPVCRpCYe-yE----rk--eG~q~CPq 64 (544)
.+..+|.-|=.++---.| +=+|..|..|| ||.|..|.. |+ |+ ----+||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 445689999888753232 55899999998 999999975 33 22 12258999
Q ss_pred Ccccccc
Q 009093 65 CKTRYKK 71 (544)
Q Consensus 65 CKTrYKR 71 (544)
|+=++.-
T Consensus 189 CGP~l~l 195 (761)
T 3vth_A 189 CGPSLSF 195 (761)
T ss_dssp TSCCEEE
T ss_pred cCCeeEE
Confidence 9988753
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.57 E-value=10 Score=32.61 Aligned_cols=53 Identities=19% Similarity=0.450 Sum_probs=40.1
Q ss_pred CCcccccCCCcc--cCCCCCceeecCCCCCCcchhhHHH------HHhcCCCCCCCCcccc
Q 009093 17 GQVCQICGDNVG--KTVDGNPFVACDVCAFPVCRPCYEY------ERKDGNQSCPQCKTRY 69 (544)
Q Consensus 17 gqiCqICGD~VG--lt~~Ge~FVAC~EC~FPVCRpCYey------ErkeG~q~CPqCKTrY 69 (544)
..+|.+|...=. ...+++.++.|..|+-..=..|..+ ..++++=.||.|++=.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~ 65 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCS 65 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccc
Confidence 458999976533 3356778999999988887788854 3678899999998533
No 87
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=57.40 E-value=9.5 Score=32.73 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=32.3
Q ss_pred CCCcccccCCCcc----cCCCCCce----eecCCCCC---------------CcchhhHHHHHhcCC-CCCCCCccccc
Q 009093 16 GGQVCQICGDNVG----KTVDGNPF----VACDVCAF---------------PVCRPCYEYERKDGN-QSCPQCKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VG----lt~~Ge~F----VAC~EC~F---------------PVCRpCYeyErkeG~-q~CPqCKTrYK 70 (544)
...+|..|+..|. +++.|..| .-|..|+= |.|+.||. + +-+. ..|-.|+.+-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~-~-~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI-R-LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHH-H-HHCCCCSSSCSSCCSC
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHH-H-HcCCCCccccCCCCcC
Confidence 4567888887764 22344433 23666633 35999995 3 3443 38999988764
No 88
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=57.19 E-value=5.8 Score=31.27 Aligned_cols=42 Identities=33% Similarity=0.712 Sum_probs=30.4
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCcccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
..|.||-+..-- -+|.+ ||=- .|+.|..- . ..||-|++.+..
T Consensus 25 ~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~-~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIA----IVFVP---CGHLVTCKQCAEA-V----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCC----EEEET---TCCBCCCHHHHTT-C----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----EEEcC---CCChhHHHHhhhc-C----ccCCCcCcCccC
Confidence 489999986321 24554 5777 89999852 2 899999998863
No 89
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=55.31 E-value=5.1 Score=41.18 Aligned_cols=43 Identities=28% Similarity=0.698 Sum_probs=31.3
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCcccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
...|.||-+..-- -+++ .||-- .|+.|..-- ..||-|++++.+
T Consensus 295 ~~~C~IC~~~~~~----~v~l---pCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS----VVFI---PCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC----EEEE---TTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc----eEEc---CCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3589999987421 2455 45777 899998621 789999999864
No 90
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=54.47 E-value=7.5 Score=31.77 Aligned_cols=53 Identities=23% Similarity=0.570 Sum_probs=32.0
Q ss_pred cCCCcccccCCCccc-----CCCCCcee----ecCCC-------------CCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGK-----TVDGNPFV----ACDVC-------------AFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGl-----t~~Ge~FV----AC~EC-------------~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
+.+.+|..|+..|.. .+.|..|- .|..| +-+.|+.||. ++- ...|.+|+.+-.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~--~~~-~~~C~~C~~~I~ 77 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTT--RED-SPKCKGCFKAIV 77 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHT--TCC-CCBCSSSCCBCC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhh--hhc-CCccccCCCccc
Confidence 345688888887753 22343321 25556 2356999984 223 368999987653
No 91
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.03 E-value=26 Score=28.29 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=22.9
Q ss_pred CccccccCCCcccccCCCccc----CCCCCce----eecCCCC
Q 009093 9 VKSIKNVGGQVCQICGDNVGK----TVDGNPF----VACDVCA 43 (544)
Q Consensus 9 ~k~~~~~~gqiCqICGD~VGl----t~~Ge~F----VAC~EC~ 43 (544)
.++.+......|..|+..|.- .+.|..| ..|..|.
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~ 49 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCN 49 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTC
T ss_pred CCccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCC
Confidence 345555667899999998853 3456654 2366663
No 92
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=52.74 E-value=10 Score=29.46 Aligned_cols=48 Identities=23% Similarity=0.695 Sum_probs=36.2
Q ss_pred cccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCcc
Q 009093 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (544)
Q Consensus 13 ~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCKT 67 (544)
...+...|.+|++. ...+.|..|.-..=-.|..- +.-+|.=.||.|..
T Consensus 7 ~~~~~~~C~vC~~~-------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG-------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC-------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC-------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34556799999972 36788999977767778764 34578899999974
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=52.68 E-value=4.6 Score=32.65 Aligned_cols=52 Identities=29% Similarity=0.683 Sum_probs=39.8
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH-HhcCCCCCCCCcc
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKT 67 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCKT 67 (544)
..+...|.||++. -..+++..+.|..|.-.+=..||.-. +-+|.=.||.|..
T Consensus 13 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456799999874 22456788999999888888998643 4578889999975
No 94
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=52.46 E-value=8.8 Score=32.82 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=17.5
Q ss_pred CCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 44 FPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 44 FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-|.|+.||. ++......|..|+++-.
T Consensus 52 ~~yC~~~y~-~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 52 RKLCRRDYL-RLFGQDGLCASCDKRIR 77 (131)
T ss_dssp EEECHHHHH-HHHCCCEECTTTCCEEC
T ss_pred EEeecCchh-hhCCCccChhhcCCccC
Confidence 467999995 33222248999998763
No 95
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=50.97 E-value=1.5 Score=35.66 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=26.9
Q ss_pred CcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCC
Q 009093 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (544)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd 81 (544)
|+|+.=.+|...+|.-.|+.|+..|--..|-|..--|
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 12 PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEA 48 (70)
T ss_dssp TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChh
Confidence 3333333444556778999999999988898887766
No 96
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=50.43 E-value=9.4 Score=35.12 Aligned_cols=54 Identities=24% Similarity=0.571 Sum_probs=33.9
Q ss_pred cCCCcccccCCCccc----CCCCCce----eecCCCCC---------------CcchhhHHHHHhcCCC-CCCCCccccc
Q 009093 15 VGGQVCQICGDNVGK----TVDGNPF----VACDVCAF---------------PVCRPCYEYERKDGNQ-SCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGl----t~~Ge~F----VAC~EC~F---------------PVCRpCYeyErkeG~q-~CPqCKTrYK 70 (544)
+...+|..|+..|.- .+.|..+ ..|..|+- +.|+.||. ++-+.+ .|..|+++-.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~--~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI--RLFGNSGACSACGQSIP 80 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHH--HHHSCCEECTTTCCEEC
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccc--cccccCCccccCCCccc
Confidence 456689999988752 2344333 24667743 46999984 334444 7999998764
No 97
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.90 E-value=12 Score=30.76 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=32.1
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc-----CCCCCCC--Cccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQ--CKTR 68 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke-----G~q~CPq--CKTr 68 (544)
-+|.||.+- .. ++.+.- .||.-.||.|-+--.++ +...||. |+..
T Consensus 8 ~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 8 FTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred eECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 489999864 22 455543 68999999998655443 2468999 8866
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=49.24 E-value=6.3 Score=30.99 Aligned_cols=49 Identities=24% Similarity=0.629 Sum_probs=35.3
Q ss_pred cccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCccc
Q 009093 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTR 68 (544)
Q Consensus 13 ~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCKTr 68 (544)
...+...|.||++. | ..+.|..|.-..=..|+.- +.-+|.=.||.|...
T Consensus 4 ~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 4 AQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 44567799999973 3 5789999976655677752 244688899999754
No 99
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.80 E-value=13 Score=29.71 Aligned_cols=63 Identities=24% Similarity=0.560 Sum_probs=36.2
Q ss_pred cccccCCCcccccCCCcc----cCCCCCce----eecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCC
Q 009093 11 SIKNVGGQVCQICGDNVG----KTVDGNPF----VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSP 76 (544)
Q Consensus 11 ~~~~~~gqiCqICGD~VG----lt~~Ge~F----VAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsp 76 (544)
|.+......|..|+..|. +.+.|..| ..|.+|+-++=.-.|-.-.++|.-. |+..|.+...+|
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~y---C~~~y~~~~~~~ 79 (82)
T 2co8_A 9 HQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFY---CLQHLPQTDSGP 79 (82)
T ss_dssp CCCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCE---ETTTCCCCCCCC
T ss_pred CcCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEE---ChHHHHhhhcCC
Confidence 344455679999999984 33456554 3455665555444442102455444 556777766665
No 100
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=48.65 E-value=12 Score=30.14 Aligned_cols=42 Identities=29% Similarity=0.815 Sum_probs=30.1
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCcccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYKR 71 (544)
..|.||-+..-- -+|++| |-- .|..|..- -+.||-|+++...
T Consensus 19 ~~C~IC~~~~~~----~v~~pC---gH~~~C~~C~~~-----~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEIN----STFCPC---GHTVCCESCAAQ-----LQSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCC----EEEETT---CBCCBCHHHHTT-----CSBCTTTCCBCCE
T ss_pred CEeEEeCcccCc----EEEECC---CCHHHHHHHHHh-----cCcCCCCCchhhC
Confidence 479999876321 256655 655 79999852 2599999998863
No 101
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.55 E-value=11 Score=30.65 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=38.6
Q ss_pred ccccccCCCcccccCCCcccCCCCCceeecC--CCCCCcchhhHHHHHhc--------CCCCCCCCccccc
Q 009093 10 KSIKNVGGQVCQICGDNVGKTVDGNPFVACD--VCAFPVCRPCYEYERKD--------GNQSCPQCKTRYK 70 (544)
Q Consensus 10 k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~--EC~FPVCRpCYeyErke--------G~q~CPqCKTrYK 70 (544)
-+........| |||.. +.+ ...|+|. .|..=.=-.|..+..+. ..-.||.|+.+-+
T Consensus 9 d~~~~~~~~~C-iC~~~---~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 9 DPFQPEIKVRC-VCGNS---LET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CSSSCCCCCCC-SSCCC---CCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cccCCCCCEEe-ECCCc---CCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 33444456688 89987 233 4899998 78766666788765442 5789999987544
No 102
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.70 E-value=15 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.558 Sum_probs=23.5
Q ss_pred ccccCCCcccccCCCcc---cCCCCCce----eecCCCCCCcchh
Q 009093 12 IKNVGGQVCQICGDNVG---KTVDGNPF----VACDVCAFPVCRP 49 (544)
Q Consensus 12 ~~~~~gqiCqICGD~VG---lt~~Ge~F----VAC~EC~FPVCRp 49 (544)
.......+|..|+..|. +.+.|..| .-|..|+-++=..
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 10 ARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hhccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 34456779999999876 23445544 3577776554333
No 103
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=47.64 E-value=8.5 Score=32.17 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=40.1
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH-HhcCCCCCCCCcccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRY 69 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCKTrY 69 (544)
.+...|.|||+. -..+++..+-|..|.-.+=..||.-. +-+|.=.||.|...-
T Consensus 23 ~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456799999964 22356789999999887778898643 457889999997643
No 104
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.32 E-value=7.5 Score=30.01 Aligned_cols=54 Identities=19% Similarity=0.557 Sum_probs=34.6
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh----cCCCCCCCCccccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRYKKH 72 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCKTrYKR~ 72 (544)
.+..|.||+..- .+++..|+|..|.-=.=-.|...... .+.-.||.|..+..|.
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 456899998753 24678999998844333344443222 2668899998765543
No 105
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=47.29 E-value=4.7 Score=35.50 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=0.8
Q ss_pred CCCcccccCCCcccCC-----------CCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 16 GGQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~-----------~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
....|.||-+++.... .++.-+.-..|+---|+.|-. +--..+..||-|+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~-~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH-HHHHcCCcCCCCCCeee
Confidence 3468999999876421 223333334688888999985 43344789999999875
No 106
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=47.19 E-value=7 Score=44.32 Aligned_cols=58 Identities=29% Similarity=0.766 Sum_probs=41.5
Q ss_pred ccCCCcccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhHH-HH----Hh--cCCCCCC
Q 009093 14 NVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCYE-YE----RK--DGNQSCP 63 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~---Ge~FVAC~EC~--------------------FPVCRpCYe-yE----rk--eG~q~CP 63 (544)
..+..+|.-|=.++---.| +=+|+-|..|| ||.|-.|-. |+ |+ ----+||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 3455689999888643333 55899999995 999999974 44 22 1123999
Q ss_pred CCcccccc
Q 009093 64 QCKTRYKK 71 (544)
Q Consensus 64 qCKTrYKR 71 (544)
.|+=++.-
T Consensus 183 ~CGP~l~l 190 (772)
T 4g9i_A 183 VCGPSYRL 190 (772)
T ss_dssp TTSCCEEE
T ss_pred cCCceEEE
Confidence 99988753
No 107
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.16 E-value=13 Score=30.29 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=34.8
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH----HhcCC---CCCCC--Ccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE----RKDGN---QSCPQ--CKTRY 69 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE----rkeG~---q~CPq--CKTrY 69 (544)
...|.||-+++.. ..++.-..|+=--|+.|..-- +++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~~----~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYPV----EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCBG----GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCccccc----ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 4589999988532 345554468999999997533 34664 48999 99874
No 108
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=46.76 E-value=5.9 Score=30.27 Aligned_cols=31 Identities=29% Similarity=0.768 Sum_probs=25.8
Q ss_pred CCcccccCCCcccCCCCCceeecCCC-CCCcchhhHHH
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEY 53 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC-~FPVCRpCYey 53 (544)
+..|..|+.+|| .-.-|.+| .|-+|..||.-
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhC
Confidence 457999998853 46899999 89999999974
No 109
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=46.34 E-value=10 Score=32.20 Aligned_cols=25 Identities=32% Similarity=0.941 Sum_probs=17.9
Q ss_pred CCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 43 AFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 43 ~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
+-|.|+.||. ++-+ ..|..|+++-.
T Consensus 50 g~~yC~~cy~--~~~~-~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYV--KNHA-VVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHH--HHSC-CBCTTTCSBCC
T ss_pred CEEechHHhC--cCcC-ccCcccCCcCC
Confidence 3477999995 2333 78999998764
No 110
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=46.16 E-value=10 Score=29.02 Aligned_cols=48 Identities=21% Similarity=0.489 Sum_probs=32.5
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCC-cchhhHHHHHhcCCCCCCCCccccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
...|.||-|..-- -.|+.- .||-- .|..|.. ..+..+..||-|+.+.+
T Consensus 7 ~~~C~IC~~~~~~----~~~~~~-pCgH~~~C~~C~~-~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD----GNIIHG-RTGHLVTCFHCAR-RLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC----EEEEET-TEEEEEECHHHHH-HHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC----eEEEec-CCCCHhHHHHHHH-HHHHhCCcCCCcCchhh
Confidence 4589999986321 134511 34555 7999997 44555689999999875
No 111
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=46.00 E-value=11 Score=35.72 Aligned_cols=54 Identities=20% Similarity=0.449 Sum_probs=36.2
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH-----HHh-----cCCCCCCCCcccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY-----ERK-----DGNQSCPQCKTRY 69 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey-----Erk-----eG~q~CPqCKTrY 69 (544)
+|+.|.||+..-.-++.+...+.|..|..=+=-.|-.. +.- ...=.||.|....
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876554444566999999987665555432 221 1257999998653
No 112
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=45.82 E-value=8.2 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.640 Sum_probs=12.9
Q ss_pred CcccccCCCcccCCCCCceeecCCCCC
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~F 44 (544)
.+|.-||-++.+.. ++. +.|.+||+
T Consensus 29 Y~C~~CG~~~e~~~-~d~-irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSR-TDA-VRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCT-TST-TCCSSSCC
T ss_pred EECCCCCCcceeCC-CCC-ccCCCCCc
Confidence 36666776665552 221 34555554
No 113
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.28 E-value=10 Score=38.05 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc-CCCCCCC--Cccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-GNQSCPQ--CKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke-G~q~CPq--CKTrYK 70 (544)
..-+|.||++-+- ++.+ ...||---||.|.+--.++ |...||. |+.++.
T Consensus 180 ~el~CPIcl~~f~-----DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYE-----APLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCS-----SEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCccc-----CCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3448999998751 2333 3478999999999754444 4568999 999875
No 114
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=45.02 E-value=1.6 Score=29.61 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=15.3
Q ss_pred CCCcchhhHHHHHhcCCCCCCCCcc
Q 009093 43 AFPVCRPCYEYERKDGNQSCPQCKT 67 (544)
Q Consensus 43 ~FPVCRpCYeyErkeG~q~CPqCKT 67 (544)
.||+||+|+.=-.+ ..+...|+|
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999953333 455566655
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.69 E-value=20 Score=29.83 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=32.4
Q ss_pred ccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH
Q 009093 10 KSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE 54 (544)
Q Consensus 10 k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE 54 (544)
.-+.......|.+|+...++..+ ---|.-||.-+|..|-.+.
T Consensus 13 ~W~~d~~~~~C~~C~~~F~~~~R---rhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 13 TWVPDSEAPNCMNCQVKFTFTKR---RHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSC---CEECTTTCCEECGGGSCEE
T ss_pred cCcccccCCcCcCCCCcccchhh---CccccCCCCEECCcccCCe
Confidence 33666677899999998876532 3679999999999998764
No 116
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.63 E-value=23 Score=26.97 Aligned_cols=38 Identities=29% Similarity=0.697 Sum_probs=22.7
Q ss_pred cCCCcccccCCCccc-----CCCCCce----eecCCCC-------------CCcchhhHH
Q 009093 15 VGGQVCQICGDNVGK-----TVDGNPF----VACDVCA-------------FPVCRPCYE 52 (544)
Q Consensus 15 ~~gqiCqICGD~VGl-----t~~Ge~F----VAC~EC~-------------FPVCRpCYe 52 (544)
+.+..|..|+..|.- .+.|..| ..|..|+ -+.|+.||.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYV 62 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHH
Confidence 345678888877643 2455554 2355663 357777775
No 117
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.28 E-value=5.2 Score=33.37 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=41.9
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH-------HhcCCCCCCCCcccccc
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-------RKDGNQSCPQCKTRYKK 71 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE-------rkeG~q~CPqCKTrYKR 71 (544)
.-...+|.||+.. -..+++..+-|..|.-..=-.|+.=- ..+|.=.|++|....++
T Consensus 13 ~e~~~~C~vC~~~--~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 13 MEMGLACVVCRQM--TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHHCCSCSSSCCC--CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCCcCCCCCCC--CCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 3356799999984 33445678999999888888888632 45788999999877653
No 118
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=44.10 E-value=14 Score=29.42 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=34.7
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH---HhcCCCCCCCCcc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKT 67 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE---rkeG~q~CPqCKT 67 (544)
.+..|.|||+. | ..+-|..|.--.=-.|+.-- .-+|.=.||.|..
T Consensus 11 ~~~~C~vC~~~------~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG------T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC------T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCC------C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 45679999852 3 47889999988888998533 4478889999975
No 119
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=43.92 E-value=23 Score=36.89 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=29.7
Q ss_pred EEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhHHHHHHH
Q 009093 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (544)
Q Consensus 353 VFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf~al~Ea 405 (544)
|.||++ +|-..-+...|..++. +| .+.|+|.|||.++-|.+-+.+.
T Consensus 4 VIiP~~---eE~I~~vl~~l~~~~~--~~--~~EIIVVDDGStD~T~eia~~l 49 (397)
T 2bo4_A 4 VVFPFK---HEHPEVLLHNVRVAAA--HP--RVHEVLCIGYERDQTYEAVERA 49 (397)
T ss_dssp EEEECC---SSCHHHHHHHHHHHHH--ST--TCCEEEEEESSCCHHHHHHHHH
T ss_pred EEEeCC---ccCHHHHHHHHHHhcc--CC--CeEEEEEECcCCccHHHHHHHh
Confidence 566766 5543334444433332 44 3679999999999999877653
No 120
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=43.25 E-value=14 Score=28.72 Aligned_cols=47 Identities=28% Similarity=0.725 Sum_probs=34.5
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTR 68 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCKTr 68 (544)
.+...|.+|++ |...+.|..|.-..=..|..- ++-+|.=.||.|..+
T Consensus 7 ~~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45678999996 335789999977766777752 344688899999754
No 121
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.10 E-value=14 Score=27.15 Aligned_cols=45 Identities=29% Similarity=0.804 Sum_probs=31.8
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHH---HHHhcCCCCCCCCcc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKT 67 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYe---yErkeG~q~CPqCKT 67 (544)
.|.||++. .+++..+.|..|.-..=..|+. -+.-+|.=.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999975 2456789999987554556763 234467788999964
No 122
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=42.51 E-value=4.5 Score=36.50 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 009093 59 NQSCPQCKTRYK 70 (544)
Q Consensus 59 ~q~CPqCKTrYK 70 (544)
...||.|+.+--
T Consensus 107 ~~~CP~Cgs~~~ 118 (139)
T 3a43_A 107 FLACPKCGSHDF 118 (139)
T ss_dssp GCSCSSSSCCCE
T ss_pred CCcCccccCCcc
Confidence 578999998754
No 123
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=42.37 E-value=5 Score=44.42 Aligned_cols=45 Identities=9% Similarity=-0.061 Sum_probs=18.1
Q ss_pred cccccC-CCcccC--CCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 19 VCQICG-DNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 19 iCqICG-D~VGlt--~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
.|..|| ..+-.. -.|..|..| |+||-|+.-.-.. -....||+ +..
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~~--p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESGS--PDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecCC--ccCCcCCC-CCe
Confidence 399998 665443 357789999 6777776554222 24478998 644
No 124
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.18 E-value=38 Score=27.46 Aligned_cols=49 Identities=22% Similarity=0.730 Sum_probs=34.7
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH-HhcCCCCCCCCccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCKTrYK 70 (544)
....|.||-+.|.. | ..|..|+-..=..|..-= +..+++.||.|++...
T Consensus 14 ~i~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34689999999863 3 467777766667787422 3344589999998875
No 125
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=39.48 E-value=20 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=11.5
Q ss_pred cccccCC-CcccC-CCCCceeecCCCCC
Q 009093 19 VCQICGD-NVGKT-VDGNPFVACDVCAF 44 (544)
Q Consensus 19 iCqICGD-~VGlt-~~Ge~FVAC~EC~F 44 (544)
.|..||. +|-.+ +.|+ +-|.+||+
T Consensus 13 ~Cp~C~~~~lv~D~~~ge--~vC~~CGl 38 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGD--MICPECGL 38 (58)
T ss_dssp SBTTBSSSCCEECSSSCC--EECTTTCC
T ss_pred cCcCCCCCceeEeCCCCe--EEeCCCCC
Confidence 5666665 33333 2344 34444443
No 126
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.30 E-value=9.7 Score=33.49 Aligned_cols=25 Identities=28% Similarity=0.748 Sum_probs=17.9
Q ss_pred ecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 38 ACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 38 AC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
-|..|||-. + .+......||.||..
T Consensus 69 ~C~~CG~~F---~---~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVF---K---AEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBC---C---CCSSCCSSCSSSCCC
T ss_pred ChhhCcCee---c---ccCCCCCCCcCCCCC
Confidence 499999986 1 233445899999864
No 127
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=37.76 E-value=28 Score=31.33 Aligned_cols=50 Identities=16% Similarity=0.480 Sum_probs=29.7
Q ss_pred CCcccccCCCccc----CCCCCce----eecCCCC------------CCcchhhHHHHHhcCCCCCCCCcccc
Q 009093 17 GQVCQICGDNVGK----TVDGNPF----VACDVCA------------FPVCRPCYEYERKDGNQSCPQCKTRY 69 (544)
Q Consensus 17 gqiCqICGD~VGl----t~~Ge~F----VAC~EC~------------FPVCRpCYeyErkeG~q~CPqCKTrY 69 (544)
..+|..|+..|.- .+.|..+ ..|..|+ -+.|..||. ++-+ ..|..|+..-
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~--~~f~-~~C~~C~~~I 75 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF--KRFG-TKCAACQLGI 75 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHH--HHHS-CBCTTTCCBC
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeeccccc--cccc-cccccccccc
Confidence 4578888877642 2344433 2355664 456999984 2333 6788887654
No 128
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.46 E-value=17 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=18.7
Q ss_pred cCCCcccccCCCcc-----cCCCCCce----eecCCCC
Q 009093 15 VGGQVCQICGDNVG-----KTVDGNPF----VACDVCA 43 (544)
Q Consensus 15 ~~gqiCqICGD~VG-----lt~~Ge~F----VAC~EC~ 43 (544)
..+.+|..|+..|. +.+.|..| ..|..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 50 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCK 50 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSC
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCC
Confidence 34579999999876 33456654 2466663
No 129
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=36.13 E-value=22 Score=30.14 Aligned_cols=51 Identities=24% Similarity=0.512 Sum_probs=35.8
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHH---hcCCCCCCCCccc
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKTR 68 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyEr---keG~q~CPqCKTr 68 (544)
+.+..+|.||++.- +.+.++.|..|.-..=..|..... +.+.-.||.|++=
T Consensus 4 ~~~~~~C~~C~~~g----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C 57 (111)
T 2ysm_A 4 GSSGANCAVCDSPG----DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVC 57 (111)
T ss_dssp CCCCSCBTTTCCCC----CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCC
T ss_pred CCCCCCCcCCCCCC----CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcc
Confidence 34667999999862 224579999998766666776543 3577889998743
No 130
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=35.90 E-value=15 Score=28.94 Aligned_cols=37 Identities=41% Similarity=0.950 Sum_probs=22.5
Q ss_pred CCCcccccCCCcc----cCCCCCce----eecCCCCC-------------CcchhhHH
Q 009093 16 GGQVCQICGDNVG----KTVDGNPF----VACDVCAF-------------PVCRPCYE 52 (544)
Q Consensus 16 ~gqiCqICGD~VG----lt~~Ge~F----VAC~EC~F-------------PVCRpCYe 52 (544)
....|..|+..|. +.+.|..| ..|..|.- +.|++||.
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 63 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYG 63 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHH
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHH
Confidence 3568999999885 23456554 24666743 46777773
No 131
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.67 E-value=26 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.2
Q ss_pred CCCcccccCCCcc
Q 009093 16 GGQVCQICGDNVG 28 (544)
Q Consensus 16 ~gqiCqICGD~VG 28 (544)
....|..|+..|.
T Consensus 4 ~~~~C~~C~~~I~ 16 (72)
T 1x4l_A 4 GSSGCAGCTNPIS 16 (72)
T ss_dssp CSCSBTTTTBCCC
T ss_pred CCCCCcCCCcccc
Confidence 3457888887775
No 132
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=35.25 E-value=9 Score=29.43 Aligned_cols=49 Identities=22% Similarity=0.687 Sum_probs=34.9
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHH--H-HHhcCCCCCCCCccccc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE--Y-ERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYe--y-ErkeG~q~CPqCKTrYK 70 (544)
.+...|.+||+. | ..+.|..|.--.=..|.. . +.-+|.-.||.|.....
T Consensus 3 ~~~~~C~vC~~~------g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC------S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC------C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 456799999973 3 578899997555566775 2 23467788999976554
No 133
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=35.23 E-value=49 Score=26.53 Aligned_cols=61 Identities=21% Similarity=0.518 Sum_probs=37.7
Q ss_pred CCccccccCCCcccccCCCcccCCCCCceeecCC--CCC-CcchhhHHHHH-hcCCCCCCCCcccccccCC
Q 009093 8 GVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDV--CAF-PVCRPCYEYER-KDGNQSCPQCKTRYKKHKG 74 (544)
Q Consensus 8 ~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~E--C~F-PVCRpCYeyEr-keG~q~CPqCKTrYKR~kg 74 (544)
...+........| ||+.. .+| ..|+|.. |.. -.=-.|..... ..|.-.||.|...-++.+|
T Consensus 7 ~~~~~d~~~~~~C-~C~~~----~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~k~~~ 71 (71)
T 1wen_A 7 GDMPVDPNEPTYC-LCHQV----SYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSSG 71 (71)
T ss_dssp SCCCCCTTSCCCS-TTCCC----SCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSSSCCC
T ss_pred cccccCCCCCCEE-ECCCC----CCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccccccCC
Confidence 3344444556789 89874 236 4899988 642 12234554332 2588999999877665544
No 134
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.06 E-value=17 Score=28.15 Aligned_cols=31 Identities=16% Similarity=0.543 Sum_probs=19.5
Q ss_pred cCCCcccccCCCccc-----CCCCCcee----ecCCCCCC
Q 009093 15 VGGQVCQICGDNVGK-----TVDGNPFV----ACDVCAFP 45 (544)
Q Consensus 15 ~~gqiCqICGD~VGl-----t~~Ge~FV----AC~EC~FP 45 (544)
..+.+|..|+..|.. .+.|..|- .|..|+-+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 48 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQ 48 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCC
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCC
Confidence 457799999999852 34555432 36666433
No 135
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=34.70 E-value=1.9 Score=34.98 Aligned_cols=37 Identities=16% Similarity=0.493 Sum_probs=26.4
Q ss_pred CcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCC
Q 009093 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (544)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd 81 (544)
|+|+-=.+|...+|.-.|+.|+..|--..|-|..--|
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 12 PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLES 48 (68)
T ss_dssp TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 3333333444556778999999999988888877755
No 136
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=34.26 E-value=28 Score=31.70 Aligned_cols=53 Identities=17% Similarity=0.517 Sum_probs=33.2
Q ss_pred ccCCCcccccCCCccc----CCCCCce----eecCCCCCC------------cchhhHHHHHhcCCCCCCCCcccc
Q 009093 14 NVGGQVCQICGDNVGK----TVDGNPF----VACDVCAFP------------VCRPCYEYERKDGNQSCPQCKTRY 69 (544)
Q Consensus 14 ~~~gqiCqICGD~VGl----t~~Ge~F----VAC~EC~FP------------VCRpCYeyErkeG~q~CPqCKTrY 69 (544)
.....+|..|+..|.- .+.|..+ ..|..|+-+ .|+.||. ++-+ ..|..|+++-
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~--~~f~-~kC~~C~~~I 129 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF--KRFG-TKCAACQLGI 129 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHH--HTTS-CCCTTTCCCC
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccc--cccc-cccccCCCcc
Confidence 3445799999998753 2345443 246677544 5888884 2233 6788888654
No 137
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=32.84 E-value=15 Score=30.90 Aligned_cols=27 Identities=33% Similarity=0.865 Sum_probs=16.5
Q ss_pred cccccCCCcccCC----CCCceeecCCCCCCc
Q 009093 19 VCQICGDNVGKTV----DGNPFVACDVCAFPV 46 (544)
Q Consensus 19 iCqICGD~VGlt~----~Ge~FVAC~EC~FPV 46 (544)
-|+ |||..-+++ +|+..|.|..|-.-|
T Consensus 32 ~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 32 PCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp CCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred eCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 466 777755552 566666666666544
No 138
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=32.73 E-value=26 Score=25.44 Aligned_cols=16 Identities=31% Similarity=0.741 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhhc
Q 009093 275 IFLRLIILGIFLYYRI 290 (544)
Q Consensus 275 ivl~lv~l~~Yl~WRi 290 (544)
+++.+++..-|||||-
T Consensus 17 ~vif~~lg~tflywrg 32 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEcc
Confidence 3344445567899984
No 139
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=32.43 E-value=11 Score=41.98 Aligned_cols=56 Identities=27% Similarity=0.763 Sum_probs=40.9
Q ss_pred ccCCCcccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhHH-HH----Hhc--CCCCCC
Q 009093 14 NVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCYE-YE----RKD--GNQSCP 63 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~---Ge~FVAC~EC~--------------------FPVCRpCYe-yE----rke--G~q~CP 63 (544)
..+..+|.-|=.++---.| +=+|+-|..|| ||.|..|.. |+ |+= ---+||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 3455689999888743232 45899999994 999999974 54 331 225999
Q ss_pred CCcccc
Q 009093 64 QCKTRY 69 (544)
Q Consensus 64 qCKTrY 69 (544)
.|+=++
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 999887
No 140
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=32.04 E-value=33 Score=29.55 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=35.1
Q ss_pred CcccccCCCc---ccCCCCCceeecCCCCCCcchhhHHH------HHhcCCCCCCCCc
Q 009093 18 QVCQICGDNV---GKTVDGNPFVACDVCAFPVCRPCYEY------ERKDGNQSCPQCK 66 (544)
Q Consensus 18 qiCqICGD~V---Glt~~Ge~FVAC~EC~FPVCRpCYey------ErkeG~q~CPqCK 66 (544)
.+|.+|.+.- ..+.+++.++.|..|+-..=..|... ..+++.=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4799997654 23346778999999976655556554 3667888899886
No 141
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=30.93 E-value=11 Score=32.17 Aligned_cols=27 Identities=33% Similarity=0.864 Sum_probs=16.2
Q ss_pred cccccCCCcccCC----CCCceeecCCCCCCc
Q 009093 19 VCQICGDNVGKTV----DGNPFVACDVCAFPV 46 (544)
Q Consensus 19 iCqICGD~VGlt~----~Ge~FVAC~EC~FPV 46 (544)
-|+ |||..-++. +|+..|.|..|..-|
T Consensus 25 pCr-CGd~F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 25 PCP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp ECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred cCC-CCCEEEECHHHHhCCCEEEECCCCccEE
Confidence 466 777655552 466666666665555
No 142
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=30.90 E-value=19 Score=33.87 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=35.5
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCccccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCKTrYK 70 (544)
+...|.+||+. | ..+-|..|.-..--.|..- +.-+|.=.||.|...-+
T Consensus 6 ~~~~C~~C~~~------g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG------G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC------E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC------C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45689999954 3 4788999987777778732 24578899999986543
No 143
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.78 E-value=25 Score=30.11 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=23.8
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHH---HHHhcCCCCCCCCcc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKT 67 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYe---yErkeG~q~CPqCKT 67 (544)
+|+|||+. ..+.+..+.|..|.-..=-.|.. -+.-+|.=.||.|+.
T Consensus 63 ~C~vC~~~---~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQ---GKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCC---CCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCc---CCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 56666653 12334456666665444445542 123355566666654
No 144
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.34 E-value=31 Score=25.92 Aligned_cols=33 Identities=15% Similarity=0.487 Sum_probs=20.2
Q ss_pred ccCCCcccccCCCccc-----CCCCCcee----ecCCCCCCc
Q 009093 14 NVGGQVCQICGDNVGK-----TVDGNPFV----ACDVCAFPV 46 (544)
Q Consensus 14 ~~~gqiCqICGD~VGl-----t~~Ge~FV----AC~EC~FPV 46 (544)
...+..|..|+..|.. ++.|..|- .|..|+=++
T Consensus 8 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L 49 (72)
T 3f6q_B 8 GSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF 49 (72)
T ss_dssp CCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCC
T ss_pred CcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCC
Confidence 4567799999998763 34555542 255554443
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.98 E-value=49 Score=25.86 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=18.9
Q ss_pred cCCCcccccCCCcc---cCCCCCcee----ecCCCCCC
Q 009093 15 VGGQVCQICGDNVG---KTVDGNPFV----ACDVCAFP 45 (544)
Q Consensus 15 ~~gqiCqICGD~VG---lt~~Ge~FV----AC~EC~FP 45 (544)
.....|..|+..|. +.+.|..|- .|..|+-+
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 50 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTN 50 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCC
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcCeeCCCCCC
Confidence 34569999999875 334555542 35566443
No 146
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=29.58 E-value=22 Score=32.66 Aligned_cols=47 Identities=19% Similarity=0.550 Sum_probs=34.3
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCcccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTRY 69 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCKTrY 69 (544)
+...|.+||+. |+ .+-|..|.-..-..|..- ..-+|.=.||.|+..=
T Consensus 3 ~~~~C~~C~~~------g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG------GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC------SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC------Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45689999954 44 688999987777777632 2446889999998653
No 147
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.54 E-value=27 Score=27.02 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=12.9
Q ss_pred CCcch-hhHHHHHhcCCCCCCCCc
Q 009093 44 FPVCR-PCYEYERKDGNQSCPQCK 66 (544)
Q Consensus 44 FPVCR-pCYeyErkeG~q~CPqCK 66 (544)
-+.|+ +||. ++-+ ..|-.|+
T Consensus 48 ~~yC~~~cy~--~~f~-~~C~~C~ 68 (76)
T 1iml_A 48 KPYCNHPCYS--AMFG-PKGFGRG 68 (76)
T ss_dssp EEEETTTHHH--HHSS-CCCSSCC
T ss_pred eEeeCHHHHH--HHhC-ccCCCcC
Confidence 46788 7984 3444 4577775
No 148
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.32 E-value=11 Score=38.30 Aligned_cols=56 Identities=23% Similarity=0.475 Sum_probs=0.0
Q ss_pred ccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHH------hcCCCCCCCCccccc
Q 009093 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER------KDGNQSCPQCKTRYK 70 (544)
Q Consensus 12 ~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyEr------keG~q~CPqCKTrYK 70 (544)
+.......|.+|+...++..+ ---|..||--+|..|-.+.. ..-..+|-.|-....
T Consensus 370 ~~~~~~~~c~~c~~~f~~~~r---~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 370 VPVTHVMMCMNCGCDFSLTLR---RHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCcccCCcCCCcCCCCCCcch---hhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 444556789999998776543 26799999999999987543 122467888866543
No 149
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.21 E-value=9.3 Score=35.85 Aligned_cols=25 Identities=24% Similarity=0.663 Sum_probs=16.0
Q ss_pred eecCCCCCCcchhhHHHHHhcCCCCCCCCccc
Q 009093 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCKTr 68 (544)
--|..|||- |+..+--..||.|+.+
T Consensus 156 ~~C~~CG~~-------~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 156 WRCRNCGYV-------HEGTGAPELCPACAHP 180 (191)
T ss_dssp EEETTTCCE-------EEEEECCSBCTTTCCB
T ss_pred EEECCCCCE-------eeCCCCCCCCCCCcCC
Confidence 447777764 3333333499999987
No 150
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=29.15 E-value=1.4 Score=33.24 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=17.6
Q ss_pred CCcccccCCCcccCC----CCCceeecCC
Q 009093 17 GQVCQICGDNVGKTV----DGNPFVACDV 41 (544)
Q Consensus 17 gqiCqICGD~VGlt~----~Ge~FVAC~E 41 (544)
+.+|.-|||.|..-+ +.+++.||||
T Consensus 20 snvcngcgdqvaaceaecfrndvytache 48 (51)
T 2ksl_A 20 SNVCNGCGDQVAACEAECFRNDVYTACHE 48 (51)
T ss_dssp HHHHHHHCSCHHHHHHTTSCSHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHhhhHHHHHHh
Confidence 458999999986542 4566777765
No 151
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=29.07 E-value=28 Score=32.07 Aligned_cols=27 Identities=26% Similarity=0.684 Sum_probs=18.8
Q ss_pred CcccccCCC--cccCCCCCceeecCCCCC
Q 009093 18 QVCQICGDN--VGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 18 qiCqICGD~--VGlt~~Ge~FVAC~EC~F 44 (544)
-+|..|+-. .-..+++-.|.-|+.||.
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCC
Confidence 378888843 444456777888888875
No 152
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=28.50 E-value=13 Score=31.26 Aligned_cols=27 Identities=26% Similarity=0.796 Sum_probs=16.1
Q ss_pred cccccCCCcccCC----CCCceeecCCCCCCc
Q 009093 19 VCQICGDNVGKTV----DGNPFVACDVCAFPV 46 (544)
Q Consensus 19 iCqICGD~VGlt~----~Ge~FVAC~EC~FPV 46 (544)
-|+ |||..-++. +|+..|.|..|..-|
T Consensus 25 pCr-CGd~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 25 PCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred eCC-CCCeEEECHHHHhCCCEEEECCCCccEE
Confidence 466 776655542 566666666665544
No 153
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.06 E-value=21 Score=27.53 Aligned_cols=15 Identities=27% Similarity=1.052 Sum_probs=12.8
Q ss_pred CCCCCCCCccccccc
Q 009093 58 GNQSCPQCKTRYKKH 72 (544)
Q Consensus 58 G~q~CPqCKTrYKR~ 72 (544)
+...||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999754
No 154
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.89 E-value=3.2 Score=33.59 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.0
Q ss_pred HhcCCCCCCCCcccccccCCCCcccCC
Q 009093 55 RKDGNQSCPQCKTRYKKHKGSPAILGD 81 (544)
Q Consensus 55 rkeG~q~CPqCKTrYKR~kgsprV~gd 81 (544)
..+|.-.|+.|+..|--..|-|..--|
T Consensus 22 ~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 22 QDKQELWSRQAKLAYPIKDGIPYMLEN 48 (68)
T ss_dssp TTTTEEEETTTTEEEEEETTEECCCTT
T ss_pred CCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 345667899999999988898887766
No 155
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.39 E-value=17 Score=30.48 Aligned_cols=54 Identities=24% Similarity=0.507 Sum_probs=37.8
Q ss_pred cccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHH---HHHhcCCCCCCCCccc
Q 009093 11 SIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKTR 68 (544)
Q Consensus 11 ~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYe---yErkeG~q~CPqCKTr 68 (544)
+-...+..+|.||++. .+.+..|.|..|.-..=..|+. -+.-+|.=.||.|...
T Consensus 10 ~~~~~~~~~C~vC~~~----~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 10 SAQFIDSYICQVCSRG----DEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCSSSCCS----GGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhhccCCCCCccCCCc----CCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3445667799999975 2346789999997555556764 2345778889999764
No 156
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.04 E-value=40 Score=26.83 Aligned_cols=52 Identities=19% Similarity=0.480 Sum_probs=33.7
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHH--------hcCCCCCCCCccccc
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER--------KDGNQSCPQCKTRYK 70 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyEr--------keG~q~CPqCKTrYK 70 (544)
..+...| ||+.. .+|+..|+|..|.-=.=-.|..... ....-.||.|.....
T Consensus 13 d~~~~~C-~C~~~----~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 13 DPNALYC-ICRQP----HNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CTTCCCS-TTCCC----CCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCCEE-ECCCc----cCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3345678 89875 2467899998885433334553322 246789999987654
No 157
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=26.79 E-value=19 Score=35.38 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=23.6
Q ss_pred CcccccCCCcc----cCCCCCc-eeecCCCCCCcchhhHH
Q 009093 18 QVCQICGDNVG----KTVDGNP-FVACDVCAFPVCRPCYE 52 (544)
Q Consensus 18 qiCqICGD~VG----lt~~Ge~-FVAC~EC~FPVCRpCYe 52 (544)
.+|..||.+-- +..+|+. .+-=+|=-.|+||-||.
T Consensus 151 aIC~~Cg~~A~~t~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 190 (234)
T 2orv_A 151 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 190 (234)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHH
T ss_pred eEecCcCCcceEEEEEcCCCCEEEECCCCcEEEccHHhhh
Confidence 48999998722 2234543 44445777899999995
No 158
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.37 E-value=31 Score=35.08 Aligned_cols=30 Identities=27% Similarity=0.786 Sum_probs=21.0
Q ss_pred cCCCcccccCCCc--c--c---CCCCCceeecCCCCC
Q 009093 15 VGGQVCQICGDNV--G--K---TVDGNPFVACDVCAF 44 (544)
Q Consensus 15 ~~gqiCqICGD~V--G--l---t~~Ge~FVAC~EC~F 44 (544)
-....|.+||..= + . +.+|.-+.-|.-|++
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t 216 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCAC 216 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCC
Confidence 3456999999881 1 1 246777999988875
No 159
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.15 E-value=31 Score=25.88 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.1
Q ss_pred CCCcccccCCCcc
Q 009093 16 GGQVCQICGDNVG 28 (544)
Q Consensus 16 ~gqiCqICGD~VG 28 (544)
-+.+|..|+..|.
T Consensus 4 ~~~~C~~C~~~I~ 16 (66)
T 1nyp_A 4 GVPICGACRRPIE 16 (66)
T ss_dssp CCCEETTTTEECC
T ss_pred CCCCCcccCCEec
Confidence 3567888887765
No 160
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=25.86 E-value=85 Score=32.99 Aligned_cols=41 Identities=10% Similarity=0.119 Sum_probs=28.0
Q ss_pred ccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhh
Q 009093 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (544)
Q Consensus 349 P~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~lt 398 (544)
..|-|.||.| ||-..+ ..+||+.+..+ ..|.|.|||.+.-|
T Consensus 51 ~~iSVVIP~y---NEE~~l-I~~vL~~i~~~-----~eIIvVDDgSrD~t 91 (394)
T 2zu9_A 51 GKMAVIVPMK---NEKLHL-VDGVLKAIPHK-----CPIIIVSNSKREGP 91 (394)
T ss_dssp TTEEEEEEES---SCCHHH-HHHHHHHSCTT-----SCEEEEECCCCSSS
T ss_pred CCEEEEEecC---cccHHH-HHHHHHcCCCC-----cEEEEEECcCcccc
Confidence 3688999999 888443 55556555333 35888889985544
No 161
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.78 E-value=30 Score=26.30 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=10.1
Q ss_pred CCCcccccCCCccc
Q 009093 16 GGQVCQICGDNVGK 29 (544)
Q Consensus 16 ~gqiCqICGD~VGl 29 (544)
-+.+|..|+..|.-
T Consensus 4 ~~~~C~~C~~~I~~ 17 (72)
T 1x4k_A 4 GSSGCQECKKTIMP 17 (72)
T ss_dssp CCCCBSSSCCCCCS
T ss_pred cCCCCccCCCcccC
Confidence 45688888887763
No 162
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.61 E-value=29 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.649 Sum_probs=18.3
Q ss_pred hcCCCCCCCCcccccccCCCCccc
Q 009093 56 KDGNQSCPQCKTRYKKHKGSPAIL 79 (544)
Q Consensus 56 keG~q~CPqCKTrYKR~kgsprV~ 79 (544)
+...+.||.|+++..+..|+-.|.
T Consensus 3 ~~~~k~CP~C~~~Iek~~GCnhmt 26 (60)
T 1wd2_A 3 AANTKECPKCHVTIEKDGGCNHMV 26 (60)
T ss_dssp CCCCCCCTTTCCCCSSCCSCCSSS
T ss_pred cccceECcCCCCeeEeCCCCCcEE
Confidence 346789999999999877775443
No 163
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.30 E-value=26 Score=32.06 Aligned_cols=21 Identities=29% Similarity=0.752 Sum_probs=11.8
Q ss_pred hhHHHHHhcCCCCCCCCccccc
Q 009093 49 PCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 49 pCYeyErkeG~q~CPqCKTrYK 70 (544)
.=|-||- ...-+||.|.--..
T Consensus 35 seytYeD-g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 35 SEYTYED-GALLVCPECAHEWS 55 (138)
T ss_dssp CCCCEEC-SSSEEETTTTEEEC
T ss_pred CcceEec-CCeEECCccccccC
Confidence 3355553 22367888876663
No 164
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=25.23 E-value=19 Score=27.75 Aligned_cols=51 Identities=27% Similarity=0.520 Sum_probs=36.9
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHH-----H-hcCCCCCCCCccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-----R-KDGNQSCPQCKTR 68 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyE-----r-keG~q~CPqCKTr 68 (544)
+..+|.||++. -+++++..+-|..|.-..=..|+.-. + -+|.=.|+.|...
T Consensus 5 ~~~~C~vC~~~--~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEE--YSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCC--CCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCC--CCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45799999974 33456788999999776666777631 2 4688899999754
No 165
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.04 E-value=33 Score=28.97 Aligned_cols=44 Identities=27% Similarity=0.687 Sum_probs=29.6
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhc--CCCCCCCCcc
Q 009093 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQCKT 67 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErke--G~q~CPqCKT 67 (544)
-| |||.. .++...|.|..|.--.=-.|+...... +.-.||.|+.
T Consensus 30 rC-iC~~~----~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFT----HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCC----SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCc----cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 46 78754 345578999999766666677654322 3579999964
No 166
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.97 E-value=30 Score=32.32 Aligned_cols=45 Identities=24% Similarity=0.668 Sum_probs=32.5
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTR 68 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCKTr 68 (544)
...|.+||+. |+ .+-|..|.----..|..- ++.+|.=.||.|...
T Consensus 2 ~~~C~~C~~~------g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP------GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC------SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC------Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4589999954 33 677999976666667631 345788899999865
No 167
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.91 E-value=16 Score=31.70 Aligned_cols=31 Identities=13% Similarity=0.413 Sum_probs=20.9
Q ss_pred ceeecCCCCCCcchhhHHHHHhcCCC-CCCCCccccccc
Q 009093 35 PFVACDVCAFPVCRPCYEYERKDGNQ-SCPQCKTRYKKH 72 (544)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q-~CPqCKTrYKR~ 72 (544)
...-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 45668888753 44445556 899999986544
No 168
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.65 E-value=50 Score=25.02 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=9.6
Q ss_pred CCCcccccCCCccc
Q 009093 16 GGQVCQICGDNVGK 29 (544)
Q Consensus 16 ~gqiCqICGD~VGl 29 (544)
.+.+|..|+..|..
T Consensus 4 ~~~~C~~C~~~I~~ 17 (72)
T 1wyh_A 4 GSSGCSACGETVMP 17 (72)
T ss_dssp CCCBCSSSCCBCCS
T ss_pred cCCCCccCCCcccc
Confidence 35678888877663
No 169
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.63 E-value=72 Score=26.78 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=6.0
Q ss_pred CCcchhhHH
Q 009093 44 FPVCRPCYE 52 (544)
Q Consensus 44 FPVCRpCYe 52 (544)
-|.|+.||.
T Consensus 53 ~~yC~~~y~ 61 (114)
T 1j2o_A 53 RKLCRRDYL 61 (114)
T ss_dssp BCCCHHHHH
T ss_pred eeechHHHH
Confidence 356788874
No 170
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=24.58 E-value=79 Score=29.55 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=30.5
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHHhhc-CCCCCCCceEEEcCCCcch
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILA-VDYPVDKVSCYVSDDGAAM 396 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA-~DYP~dKlsVYVsDDGgs~ 396 (544)
-+.|-| |+|| |+ ...+.+++.|+.. +..+.. +.|+|.|+|.+.
T Consensus 15 ~~~iSI-I~~y---N~-~~~l~~~l~sl~~sl~~q~~-~EiIVVDn~s~d 58 (249)
T 2nxv_A 15 TLMFSV-CSLV---RD-QAKYDRLLESFERFGFTPDK-AEFLAADNREGN 58 (249)
T ss_dssp CCSEEE-EEEE---SC-HHHHHHHHHHHHHTTCCTTT-EEEEEEECTTSC
T ss_pred cceEEE-EEee---CC-HHHHHHHHHHHHHhccCCCc-EEEEEEECCCCC
Confidence 355665 6779 66 5788899987663 433433 889999998875
No 171
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.40 E-value=72 Score=24.07 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.2
Q ss_pred CCcccccCCCcc
Q 009093 17 GQVCQICGDNVG 28 (544)
Q Consensus 17 gqiCqICGD~VG 28 (544)
..+|..|+..|.
T Consensus 5 ~~~C~~C~~~I~ 16 (70)
T 2d8x_A 5 SSGCHQCGEFII 16 (70)
T ss_dssp SSBCSSSCCBCC
T ss_pred CCcCccCCCEec
Confidence 457777777764
No 172
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=24.37 E-value=5.7 Score=38.74 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=23.1
Q ss_pred CcccccCCCcccC---CCC-------Cc-eeecCCCCCCcchhhHH
Q 009093 18 QVCQICGDNVGKT---VDG-------NP-FVACDVCAFPVCRPCYE 52 (544)
Q Consensus 18 qiCqICGD~VGlt---~~G-------e~-FVAC~EC~FPVCRpCYe 52 (544)
.+|..||.+--.+ .+| +. .|-=+|=-.|+||-||.
T Consensus 163 aiC~~CG~~A~~~~R~~~g~~~~~~g~~i~IGg~e~Y~~~CR~cy~ 208 (219)
T 3e2i_A 163 AVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHI 208 (219)
T ss_dssp EECTTTCSEECEEEEEETTEECBTTCCSCCSSCCEEEEEECGGGCC
T ss_pred eEccCCCCcceEEEEEECCcccccCCCEEEECCCccEEEcCHHhhc
Confidence 4999999873322 233 32 34445667899999995
No 173
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.34 E-value=16 Score=27.73 Aligned_cols=45 Identities=24% Similarity=0.683 Sum_probs=30.0
Q ss_pred cCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHH---HHhcCCCCCCCCc
Q 009093 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCK 66 (544)
Q Consensus 15 ~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCK 66 (544)
.+...|.+|++. | ..+.|..|.--.=..|+.- +.-+|.-.||.|.
T Consensus 7 ~~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS------S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC------C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 346689999974 3 5788988875555566651 2335666787774
No 174
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.28 E-value=27 Score=27.68 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHH---hcCCCCCCCCcccc
Q 009093 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKTRY 69 (544)
Q Consensus 17 gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyEr---keG~q~CPqCKTrY 69 (544)
...| |||.. ..+|+..|+|..|.-=.=-.|..+.. ..+.-.||.|+.+-
T Consensus 16 ~~~C-~C~~~---~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTK---DDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCC---SCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCc---cCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3478 79875 24688999998873222224443321 24567888887653
No 175
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.19 E-value=54 Score=24.72 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=8.6
Q ss_pred CCCcccccCCCcc
Q 009093 16 GGQVCQICGDNVG 28 (544)
Q Consensus 16 ~gqiCqICGD~VG 28 (544)
.+.+|..|+..|.
T Consensus 4 ~~~~C~~C~~~I~ 16 (70)
T 2d8z_A 4 GSSGCVQCKKPIT 16 (70)
T ss_dssp CCCBCSSSCCBCC
T ss_pred CCCCCcccCCeec
Confidence 3457777777664
No 176
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=23.75 E-value=50 Score=25.37 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=33.6
Q ss_pred CcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCccccc
Q 009093 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (544)
Q Consensus 18 qiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYK 70 (544)
-+|.||++-.. ++.++ ..||+-.||.|-+--.+.. +.||-++.+..
T Consensus 4 ~~CpIs~~~m~-----dPV~~-~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPR-----RPVLS-PKSRTIFEKSLLEQYVKDT-GNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCS-----SEEEE-TTTTEEEEHHHHHHHHHHH-SBCTTTCCBCC
T ss_pred EEecCCCCCCC-----CCEEe-CCCCcEEcHHHHHHHHHhC-CCCcCCcCCCC
Confidence 48999987643 35443 2689999999998655543 56999998875
No 177
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=23.50 E-value=17 Score=40.04 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=0.0
Q ss_pred CCcccccCCC--c--ccCCCCCceeecCCCCCCc
Q 009093 17 GQVCQICGDN--V--GKTVDGNPFVACDVCAFPV 46 (544)
Q Consensus 17 gqiCqICGD~--V--Glt~~Ge~FVAC~EC~FPV 46 (544)
.-+|+||+-. | -.+.+....-+|--||.+-
T Consensus 117 tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p 150 (566)
T 1w7p_D 117 TWVCPICMVSNETQGEFTKDTLPTPICINCGVPA 150 (566)
T ss_dssp ----------------------------------
T ss_pred ceeccccccCCCCCCCCCcccCCCCcccccCCCC
Confidence 3499999844 1 2233345677898898874
No 178
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.21 E-value=84 Score=25.17 Aligned_cols=49 Identities=18% Similarity=0.436 Sum_probs=30.6
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh----cCCCCCCCCccc
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTR 68 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCKTr 68 (544)
....| ||+..- .++...|+|..|.-=.=-.|...... .+.-.||.|...
T Consensus 11 ~~~~C-~C~~~~---d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPY---NVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSC---CSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCcc---CCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 44577 898753 23668899988753333345433221 366899999865
No 179
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=22.93 E-value=36 Score=31.81 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=24.6
Q ss_pred ccCCCcccccCCCcccCCCCCceeecCCC-----CC---CcchhhHHHH
Q 009093 14 NVGGQVCQICGDNVGKTVDGNPFVACDVC-----AF---PVCRPCYEYE 54 (544)
Q Consensus 14 ~~~gqiCqICGD~VGlt~~Ge~FVAC~EC-----~F---PVCRpCYeyE 54 (544)
..-+..|.|||..+.-+...-..--||+| |. .+|+.|=-.+
T Consensus 17 ~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~g~~tG~VRGlLC~~CN~~l 65 (157)
T 1e7l_A 17 DAQNGKCLICQRELNPDVQANHLDHDHELNGPKAGKVRGLLCNLCDAAE 65 (157)
T ss_dssp HHTTTBCTTTCCBCCSSGGGSEEEECCCCSSTTTTBEEEEECHHHHHHH
T ss_pred HHhCCcCcccCCccccccccccccCCCCCCCCCCCcchhhccHhHhchh
Confidence 34567999999985333334455668844 32 4556665544
No 180
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.90 E-value=13 Score=30.96 Aligned_cols=22 Identities=18% Similarity=0.677 Sum_probs=17.6
Q ss_pred chhhHHHHHhcCCCCCCCCccc
Q 009093 47 CRPCYEYERKDGNQSCPQCKTR 68 (544)
Q Consensus 47 CRpCYeyErkeG~q~CPqCKTr 68 (544)
|..||........+-||.|+-.
T Consensus 18 C~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 18 CHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp CSSSCCEESCSSCCSCSSSCCS
T ss_pred ecccceECCCcccccccccCcc
Confidence 6677776677788999999975
No 181
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.72 E-value=62 Score=25.92 Aligned_cols=14 Identities=14% Similarity=0.496 Sum_probs=11.2
Q ss_pred ccCCCcccccCCCc
Q 009093 14 NVGGQVCQICGDNV 27 (544)
Q Consensus 14 ~~~gqiCqICGD~V 27 (544)
.....+|..|+..|
T Consensus 22 ~~~~~~C~~C~~~I 35 (90)
T 2dar_A 22 GKRTPMCAHCNQVI 35 (90)
T ss_dssp TTCCCBBSSSCCBC
T ss_pred CCCCCCCccCCCEe
Confidence 34567899999988
No 182
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.11 E-value=50 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=18.2
Q ss_pred CCcccccCCCcc---cCCCCCcee----ecCCCCCC
Q 009093 17 GQVCQICGDNVG---KTVDGNPFV----ACDVCAFP 45 (544)
Q Consensus 17 gqiCqICGD~VG---lt~~Ge~FV----AC~EC~FP 45 (544)
..+|..|+..|. +.+.|..|- .|..|+-+
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 60 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLN 60 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCC
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCCCC
Confidence 358999999875 234555542 46666544
No 183
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=22.05 E-value=20 Score=32.51 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=34.8
Q ss_pred cccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHh----cCCCCCCCCcccc
Q 009093 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRY 69 (544)
Q Consensus 13 ~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCKTrY 69 (544)
....+..| +||..- .++...+.|..|.-=.--.|...... .+.=.||.|+..-
T Consensus 4 ~~~~~~~C-~C~~~~---~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 4 GSDTKLYC-ICKTPE---DESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp ---CCEET-TTTEEC---CTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCCcEe-eCCCCC---CCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 34456789 998651 23567899999976666677653222 4678899998653
No 184
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.88 E-value=13 Score=33.68 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.9
Q ss_pred CCCCCCccccccc
Q 009093 60 QSCPQCKTRYKKH 72 (544)
Q Consensus 60 q~CPqCKTrYKR~ 72 (544)
..||.|+.+.+|.
T Consensus 149 ~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 149 GVCPDCGSKVKLI 161 (165)
T ss_dssp GBCTTTCCBEEEC
T ss_pred CcCCCCCCcceeC
Confidence 5899999998765
No 185
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=21.65 E-value=35 Score=33.04 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=0.0
Q ss_pred cccccCCCcccCCCCCceee-cCCCCC---Ccchhh
Q 009093 19 VCQICGDNVGKTVDGNPFVA-CDVCAF---PVCRPC 50 (544)
Q Consensus 19 iCqICGD~VGlt~~Ge~FVA-C~EC~F---PVCRpC 50 (544)
.|.|||...+.+..+.+-|= ||+||. .+|++|
T Consensus 139 ~C~ICg~~~~~~~~k~lvVDHDH~TG~VRGlLC~~C 174 (200)
T 3gox_A 139 TCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSC 174 (200)
T ss_dssp ECTTTCCEEEBTTTBCEEEEECTTTCCEEEEEEHHH
T ss_pred cCcCCCCCCCcCcccceeeecccCCCcEecccchhh
No 186
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=21.60 E-value=25 Score=26.66 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=5.8
Q ss_pred cccccCCCcc
Q 009093 19 VCQICGDNVG 28 (544)
Q Consensus 19 iCqICGD~VG 28 (544)
.|..|+..|.
T Consensus 4 ~C~~C~~~I~ 13 (65)
T 2iyb_E 4 VCQGCHNAID 13 (65)
T ss_dssp ECTTTSSEEC
T ss_pred CCcCCCCeec
Confidence 5666665554
No 187
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.89 E-value=23 Score=25.18 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=19.2
Q ss_pred cccccCCC--cccCCCCCceeecCCCCC
Q 009093 19 VCQICGDN--VGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 19 iCqICGD~--VGlt~~Ge~FVAC~EC~F 44 (544)
+|+.|+-. ....+++..|.-|+.||.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 68888855 333357778999999985
No 188
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=20.87 E-value=46 Score=32.72 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=31.3
Q ss_pred CccccEEeccCCCCCCChHhHHHHHHHhh---cCCCCCCCceEEEcCCC
Q 009093 348 LAAVDIFVSTVDPLKEPPLVTANTVLSIL---AVDYPVDKVSCYVSDDG 393 (544)
Q Consensus 348 LP~VDVFI~TyDP~nEPp~vv~nTVLSaL---A~DYP~dKlsVYVsDDG 393 (544)
.|.|-|.|+|| |++ ..+..++.|++ +-.|+ .+.|+|.||+
T Consensus 64 ~~~VSIIIP~y---N~~-~~L~~~L~sl~~~l~q~~~--~~EIiVVdds 106 (287)
T 2fy7_A 64 PHKVAIIIPFR---NRQ-EHLKYWLYYLHPVLQRQQL--DYGIYVINQA 106 (287)
T ss_dssp SCEEEEEEEES---SCH-HHHHHHHHHHHHHHHHTTC--EEEEEEEEEC
T ss_pred CCcEEEEEeeC---CCH-HHHHHHHHHHHHHHHHhcC--CceEEEEEeC
Confidence 58899999999 775 56777777777 56676 4789998874
No 189
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.87 E-value=39 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=17.9
Q ss_pred CCCcccccCCCccc----CCCCCcee----ecCCCCCC
Q 009093 16 GGQVCQICGDNVGK----TVDGNPFV----ACDVCAFP 45 (544)
Q Consensus 16 ~gqiCqICGD~VGl----t~~Ge~FV----AC~EC~FP 45 (544)
....|..|+..|.. .+.|..|- .|..|.-+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~ 45 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKT 45 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCB
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCc
Confidence 45689999988763 23454442 35666433
No 190
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=20.61 E-value=43 Score=30.50 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=15.8
Q ss_pred CcccccCCC--cccCCCCCceeecCCCCC
Q 009093 18 QVCQICGDN--VGKTVDGNPFVACDVCAF 44 (544)
Q Consensus 18 qiCqICGD~--VGlt~~Ge~FVAC~EC~F 44 (544)
-+|..|+-. .-..+++-.|.-|+-||.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 468888843 334456667888888874
No 191
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.50 E-value=23 Score=26.71 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=6.4
Q ss_pred CCCCCCccc
Q 009093 60 QSCPQCKTR 68 (544)
Q Consensus 60 q~CPqCKTr 68 (544)
=.||.|+.+
T Consensus 31 w~CP~Cg~~ 39 (46)
T 6rxn_A 31 WCCPVCGVS 39 (46)
T ss_dssp CBCTTTCCB
T ss_pred CcCcCCCCc
Confidence 378888765
No 192
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=20.18 E-value=50 Score=29.98 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=26.4
Q ss_pred EEEcCCCcchhhHHHHHHHHHHHHhhHHHHHHcCCCcCCc
Q 009093 387 CYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (544)
Q Consensus 387 VYVsDDGgs~ltf~al~Eaa~FAr~WvPFCkk~~IepRaP 426 (544)
.|+-+||.-..++.. ..|...|..+|+++||.|+.=
T Consensus 119 ~~~~~~g~~~~~~d~----~~~~~~~~~~~~~~g~~~~~~ 154 (159)
T 3ebr_A 119 LYLDDKDNIIAVENW----KTSMDRYLNYCKAHGIRPKDL 154 (159)
T ss_dssp EEECTTCCEEEEECH----HHHHHHHHHHHHHTTCCCCCC
T ss_pred EecCCCCCEEEEcCH----HHHHHHHHHHHHHcCCCcccc
Confidence 677788776555443 345567888999999999864
No 193
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.09 E-value=91 Score=25.83 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=21.2
Q ss_pred CCCcccccCCCcccCCCCCceeecCCCCCCcch
Q 009093 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCR 48 (544)
Q Consensus 16 ~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCR 48 (544)
...-|..|+..|||+. ..|. |+.-.|-
T Consensus 24 ~~nRC~~CrKkvgL~g-----f~Cr-Cg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTG-----FDCR-CGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGGGC-----EECT-TSCEECS
T ss_pred cCCcChhhCCcccccC-----eecC-CCCEech
Confidence 3458999999999982 6896 9877664
No 194
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.07 E-value=56 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=10.2
Q ss_pred hcCCCCCCCCccccc
Q 009093 56 KDGNQSCPQCKTRYK 70 (544)
Q Consensus 56 keG~q~CPqCKTrYK 70 (544)
..|.-+|+.|+.-|.
T Consensus 21 ~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 21 ERGEIVCAKCGYVIE 35 (50)
T ss_dssp TTTEEEESSSCCBCC
T ss_pred CCCeEECcccCCccc
Confidence 345567888887774
Done!