BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009095
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 342 PPAAVSSVNSLPRVIVNKEHQK-QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWL 400
PPA+ S+++LP ++V ++H +++ C IC G +LPC H +H+ C+ WL
Sbjct: 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL 74
Query: 401 SARNSCPLCRYELP 414
+CP+CR P
Sbjct: 75 QKSGTCPVCRCMFP 88
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
C IC +L G +V +LPC HL+HQ C+ WL CP+CR ++
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
L C +CK+ G V +LPC HL+H +CI PWL +SCP+CR L
Sbjct: 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 348 SVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCP 407
S LP N + + E +C +C S + LPC H +H C+ WL A +CP
Sbjct: 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCP 64
Query: 408 LCRYE 412
+CR +
Sbjct: 65 ICRAD 69
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLC 409
+CA+C + E+ PC H +H+ C+ WL R CPLC
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 369 CAICKDLLPSGTEVIKLP-CFHLYHQTCIFPWLSARNSCPLCR 410
CA+C L G E LP C H +H C+ WL + ++CPLCR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 319 LDARGFEELLSHLAETDNSRRGAPPAAVSSVNSLPRVIVNKEH---QKQE---------- 365
L + GF+E + + E + S++ + L + KE QK+E
Sbjct: 3 LGSPGFQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLE 62
Query: 366 -DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
+L C IC + E + L C H + CI W+ + CP+CR ++ +
Sbjct: 63 NELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD------D 417
+ +L C IC + E + L C H + CI W+ + CP+CR ++ + D
Sbjct: 51 ENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLD 107
Query: 418 KEYEEGKQNISSRIE 432
+ N+SS ++
Sbjct: 108 NXINKMVNNLSSEVK 122
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
+ +L C IC + E + L C H + CI W+ + CP+CR ++ +
Sbjct: 51 ENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
C IC D G + LPC H + Q CI W +CP+CR ++
Sbjct: 18 CCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLC 409
L+C +C T +I+ C H + +TCI +L CP+C
Sbjct: 16 LMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLC 409
L+C +C T +I+ C H + +TCI +L CP+C
Sbjct: 16 LMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLC 409
L+C +C T +I+ C H + +TCI +L CP+C
Sbjct: 12 LMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCR 410
C IC L + LPC H + CI W+ +CPLC+
Sbjct: 8 CPIC--LEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 369 CAIC-KDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRY 411
C IC +D+ S LPC HL H+TC L CPLC +
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLC 409
++C+ICK L T + + C H + ++CI N CP C
Sbjct: 16 ILCSICKGYLIDATTITE--CLHTFCKSCIVRHFYYSNRCPKC 56
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 369 CAICKD----LLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
C IC D ++ +G ++ C H++ C+ L N+CP CR ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 369 CAICKD----LLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
C IC D ++ +G ++ C H++ C+ L N+CP CR ++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 369 CAICKD----LLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
C IC D ++ +G ++ C H++ C+ L N+CP CR ++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 369 CAICKD----LLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
C IC D ++ +G ++ C H++ C+ L N+CP CR ++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 369 CAICKD----LLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
C IC D ++ +G ++ C H++ C+ L N+CP CR ++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 345 AVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN 404
A+ V + + + KQED V V+ C H +H C+ W+ N
Sbjct: 19 AICRVQVMDACLRCQAENKQEDCV-------------VVWGECNHSFHNCCMSLWVKQNN 65
Query: 405 SCPLCRYE 412
CPLC+ +
Sbjct: 66 RCPLCQQD 73
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCI--FPWLSARNSCPLCRYELPTD 416
CAIC L + + LPC H++ C+ WL R C LCR E+P D
Sbjct: 18 CAIC---LQTCVHPVSLPCKHVFCYLCVKGASWLGKR--CALCRQEIPED 62
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W + CP CR
Sbjct: 8 KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 67
Query: 412 EL 413
E+
Sbjct: 68 EI 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWL-SARNSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W S CP CR
Sbjct: 10 KVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRC 69
Query: 412 EL 413
E+
Sbjct: 70 EI 71
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 387 CFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
C H +H CI WL R CPL D++E+E
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL-------DNREWE 92
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 387 CFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
C H +H CI WL R CPL D++E+E
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL-------DNREWE 84
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W + CP CR
Sbjct: 11 KVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 70
Query: 412 EL 413
E+
Sbjct: 71 EI 72
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 387 CFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
C H +H CI WL R CPL D++E+E
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL-------DNREWE 111
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 387 CFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
C H +H CI WL R CPL D++E+E
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL-------DNREWE 102
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 387 CFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
C H +H CI WL R CPL D++E+E
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL-------DNREWE 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 387 CFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
C H +H CI WL R CPL D++E+E
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL-------DNREWE 100
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWL-SARNSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W S CP CR
Sbjct: 322 KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRC 381
Query: 412 EL 413
E+
Sbjct: 382 EI 383
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W + CP CR
Sbjct: 318 KVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 377
Query: 412 EL 413
E+
Sbjct: 378 EI 379
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 387 CFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
C H +H CI WL R CPL D++E+E
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL-------DNREWE 100
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W + CP CR
Sbjct: 316 KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375
Query: 412 EL 413
E+
Sbjct: 376 EI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W + CP CR
Sbjct: 316 KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375
Query: 412 EL 413
E+
Sbjct: 376 EI 377
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 359 KEHQKQEDLVC------AICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRY 411
K Q+Q +L C +CK + +V PC HL +C+ W + CP CR
Sbjct: 318 KVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 377
Query: 412 EL 413
E+
Sbjct: 378 EI 379
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCI-------FPWLSARNSCPLC 409
QE++ C IC +LL TE + L C H + CI + ++SCP+C
Sbjct: 10 QEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYEEG 423
++ L C +C LL C H +TC + + SC C+ D +++EE
Sbjct: 39 RQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCK-----DYEQFEEN 93
Query: 424 KQ 425
KQ
Sbjct: 94 KQ 95
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 365 EDLVCAICKDLLPSGTEVIKLPCF-HLYHQTCIFPWL--SARNSCPLC 409
++L+C ICKD++ T+ + +PC + Y CI L S ++CP C
Sbjct: 12 DELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 56
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 369 CAIC-KDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLC 409
C IC +D+ S LPC HL H+TC L CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 104 QSIDGDASARLFQPSGSRTSPSDSRRWRRIVSDAESDGLDSLYPESESNLSFSRYRVL-- 161
+ + G ++ L +P P D + I+ + GLD L+ E + + VL
Sbjct: 85 EYLGGGSALDLLEPG-----PLDETQIATILREI-LKGLDYLHSEKKIHRDIKAANVLLS 138
Query: 162 -HGESDAVSYSAYGGDSDASVDGHSFLDRDMFIPPEY--GSIFDSDSDI 207
HGE + G +D + ++F+ ++ PE S +DS +DI
Sbjct: 139 EHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADI 187
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 30/100 (30%)
Query: 317 DYLDARGFEELLSHLAETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLL 376
D + + ++E+LSHL E N + + ++ +C C++L+
Sbjct: 51 DCQNQKLWDEVLSHLVEGPNFLK----------------------KLEQSFMCVCCQELV 88
Query: 377 --PSGTEVIKLPCFHLYHQTCIFPWLSARN-SCPLCRYEL 413
P TE CFH + C+ A+ SCP CR++L
Sbjct: 89 YQPVTTE-----CFHNVCKDCLQRSFKAQVFSCPACRHDL 123
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 104 QSIDGDASARLFQPSGSRTSPSDSRRWRRIVSDAESDGLDSLYPESESNLSFSRYRVL-- 161
+ + G ++ L +P P D + I+ + GLD L+ E + + VL
Sbjct: 105 EYLGGGSALDLLEPG-----PLDETQIATILREI-LKGLDYLHSEKKIHRDIKAANVLLS 158
Query: 162 -HGESDAVSYSAYGGDSDASVDGHSFLDRDMFIPPEY--GSIFDSDSDI 207
HGE + G +D + ++F+ ++ PE S +DS +DI
Sbjct: 159 EHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADI 207
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCR 410
QE+ C +C D ++ +PC HL C P L CP+CR
Sbjct: 11 QEERTCKVCLD---RAVSIVFVPCGHLVCAECA-PGLQL---CPICR 50
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 365 EDLVCAICKDLLPSGTEVIKLPCF-HLYHQTCIFPWL--SARNSCPLC 409
++L+C ICKD++ T+ + +PC + Y CI L S ++CP C
Sbjct: 14 DELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 363 KQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNS----CPLCRYELPTDDK 418
K++ + C +C + L ++ PC Y Q C F W R CP CR P D
Sbjct: 8 KEDPVECPLCMEPLEI-DDINFFPCTCGY-QICRFCWHRIRTDENGLCPACRKPYPEDPA 65
Query: 419 EYEEGKQNISSRI 431
Y+ Q RI
Sbjct: 66 VYKPLSQEELQRI 78
>pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure
Length = 114
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 109 DASARLFQPSGSRTSPSDSRRWRRIVS--DAESDGLD--SLYPESESNLSFSRYRVLHGE 164
DA ++Q +GS++SP + + + DAE GL ++ E++S++ +++L G+
Sbjct: 45 DAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPKVEVFXETDSDIPAEFWKLLGGK 104
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 388 FHLYHQTCIFPWLSARNS--CPLCRYELPTDDK 418
H HQ C+ W+ + ++ C LC+YE + K
Sbjct: 41 LHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,572,954
Number of Sequences: 62578
Number of extensions: 613638
Number of successful extensions: 1322
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 55
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)