BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009095
(544 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 72/106 (67%)
Query: 316 GDYLDARGFEELLSHLAETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDL 375
GDY G E+L+ LAE D +R G PPA+ S++++LP V V K+ K E CA+C D
Sbjct: 163 GDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDE 222
Query: 376 LPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
G++V ++PC H++HQ C+ PWL NSCP+CR+ELPTDD +YE
Sbjct: 223 FEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYE 268
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 69/106 (65%)
Query: 316 GDYLDARGFEELLSHLAETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDL 375
GDY G E+L+ LAE D +R G PPA+ S++ +LP V + K + E CA+C D
Sbjct: 171 GDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDD 230
Query: 376 LPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYE 421
GTE ++PC HLYH+ C+ PWL NSCP+CR+ELPTDD +YE
Sbjct: 231 FEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYE 276
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 85/153 (55%), Gaps = 16/153 (10%)
Query: 289 RTREGRQRLT--RNIFANLE--------EVELIGTSGGDYLD-ARGFEELLSHLAETDNS 337
++R GR R+ I +E E + + DY+D A G+E LL +LAE D
Sbjct: 163 QSRTGRNRILDWAEILMGIEDNSIEFRMESDRYAGNPADYIDDAAGYEALLQNLAEGDGG 222
Query: 338 RRG----APPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQ 393
G APPAA S++ +L V+ + + +VCA+CKD + G KLPC H YH
Sbjct: 223 GGGGRRGAPPAAKSAIEALETFEVSSS-EGEMVMVCAVCKDGMVMGETGKKLPCGHCYHG 281
Query: 394 TCIFPWLSARNSCPLCRYELPTDDKEYEEGKQN 426
CI PWL RNSCP+CR++L TDD EYEE ++
Sbjct: 282 DCIVPWLGTRNSCPVCRFQLETDDAEYEEERKK 314
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 342 PPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS 401
PPAA + V SLPR +++ + DL C +C + VI++PC HL+H CI PWLS
Sbjct: 64 PPAAKAVVESLPRTVIS---SAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLS 120
Query: 402 ARNSCPLCRYELPTDDKEYEEGKQNISSRIEVHGIQQH 439
NSCPLCR+ELPTDD YEE K++ + R + QQH
Sbjct: 121 KTNSCPLCRHELPTDDDSYEEHKKDKARRQQ----QQH 154
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Query: 342 PPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS 401
PPAA + V SLPR ++ + +L C +C VI++PC HL+H CI PWLS
Sbjct: 64 PPAAKAVVESLPRTVIR---SSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLS 120
Query: 402 ARNSCPLCRYELPTDDKEYEEGKQNISSRIEVHGIQQH 439
NSCPLCR+ELPTDD YEE K++ + R + QQH
Sbjct: 121 KTNSCPLCRHELPTDDDSYEEHKKDKARRQQ----QQH 154
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Query: 342 PPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS 401
PPAA + V +LPR ++ Q +L C +C I++PC HL+H +CI PWLS
Sbjct: 52 PPAAKTVVENLPRTVIRG---SQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLS 108
Query: 402 ARNSCPLCRYELPTDDKEYEEGKQNISSRIEVHGIQQH 439
NSCPLCRYELPTDD YEE +++ + + + QQH
Sbjct: 109 KTNSCPLCRYELPTDDDTYEEHRRDKARKQQ----QQH 142
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 334 TDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQ 393
T+ +R PPA+ V SLP+V V E Q L C +C G V +LPC HL+H
Sbjct: 45 TEWDQRLPPPASKKVVESLPKVTVTPE-QADAALKCPVCLLEFEEGETVRQLPCEHLFHS 103
Query: 394 TCIFPWLSARNSCPLCRYELPTDDKEYEEGKQNISSR 430
CI PWL NSCPLCR+ELPTD +YEE KQ + R
Sbjct: 104 ACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKARR 140
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 342 PPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS 401
PPAA ++V +LPR ++ Q +L C +C I++PC HL+H CI PWLS
Sbjct: 52 PPAAKTAVENLPRTVIRG---SQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLS 108
Query: 402 ARNSCPLCRYELPTDDKEYEEGKQNISSR 430
NSCPLCR+ELPTDD YEE K++ + +
Sbjct: 109 KTNSCPLCRHELPTDDDTYEEHKRDKARK 137
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 334 TDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQ 393
+D +R PPAA + V SLP VI++ E Q + + C +C V ++PC HL+H
Sbjct: 45 SDWDQRLPPPAAKAVVQSLPVVIISPE-QADKGVKCPVCLLEFEEQESVREMPCKHLFHT 103
Query: 394 TCIFPWLSARNSCPLCRYELPTDDKEYEEGKQNISSR 430
CI PWL+ NSCPLCR ELPTD+ +YEE K++ R
Sbjct: 104 GCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERR 140
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 341 APPAAVSSVNSLPRVIVNKEHQKQ--EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFP 398
APPA+ V LP +I +E K+ + C ICK+ L G ++ +LPC H +H C+ P
Sbjct: 200 APPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKP 259
Query: 399 WLSARNSCPLCRYELPTDDKEYE 421
WL NSCP+CR+ELPTDD++YE
Sbjct: 260 WLDEHNSCPICRHELPTDDQKYE 282
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 323 GFEELLSHLAETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEV 382
G + L L T+ +R PPAA V SLP+V V E Q L C +C G V
Sbjct: 34 GMDIDLGALDFTEWDQRLPPPAAKKVVESLPKVTVTPE-QADAALKCPVCLLEFEEGETV 92
Query: 383 IKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416
+LPC HL+H +CI PWL NSCPLCR+ELPTD
Sbjct: 93 RQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTD 126
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 255 PQLRNYFSSPSERNVPVNRSWPFQSPEFEGIFRWRTREGRQRLTRNIFAN---------L 305
P R Y S S R P +SP EGI Q++ FAN
Sbjct: 123 PMTRRYRSRGSTR--------PDRSPAIEGII--------QQIFAGFFANSAIPGSPHPF 166
Query: 306 EEVELIGTSGGDYL-DARGFEELLSHL-AETDNSRRGAPPAAVSSVNSLPRVIVNKEHQK 363
++ ++ GDY G + +++ L + +N+ G PPA + SLP V V +E Q
Sbjct: 167 SWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENT--GPPPADKEKITSLPTVTVTQE-QV 223
Query: 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417
L C +CK+ +V +LPC H +H +CI PWL ++CP+CR L +D
Sbjct: 224 NTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 277
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 22/153 (14%)
Query: 276 PFQSPEFEGIFRWRTREGRQRLTRNIFAN---------LEEVELIGTSGGDYL-DARGFE 325
P +SP EGI Q + FAN ++ ++ GDY G +
Sbjct: 135 PDRSPAIEGIL--------QHIFAGFFANSAIPGSPHPFSWSGMLHSNPGDYAWGQTGLD 186
Query: 326 ELLSHL-AETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIK 384
+++ L + +N+ G PPA + SLP V V +E Q L C +CK+ EV +
Sbjct: 187 AIVTQLLGQLENT--GPPPADKEKITSLPTVTVTQE-QVDMGLECPVCKEDYTVEEEVRQ 243
Query: 385 LPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417
LPC H +H +CI PWL ++CP+CR L +D
Sbjct: 244 LPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 276
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 280 PEFEGIFRWRTREGRQRLTRNIFANLEEVELIGTSGGDYL-DARGFEELLSHLA-ETDNS 337
P EGI + +T +L ++ ++ DY A G + +++ L + +N+
Sbjct: 144 PTLEGIIQQLVN---GIITPATIPSLGPWGVLHSNPMDYAWGANGLDAIITQLLNQFENT 200
Query: 338 RRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIF 397
G PPA + +LP V V +EH L C +CKD G V +LPC HL+H CI
Sbjct: 201 --GPPPADKEKIQALPTVPVTEEHVG-SGLECPVCKDDYALGERVRQLPCNHLFHDGCIV 257
Query: 398 PWLSARNSCPLCRYEL 413
PWL +SCP+CR L
Sbjct: 258 PWLEQHDSCPVCRKSL 273
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 315 GGDYLDARGFEELLSHLAETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKD 374
G + LDA +LL+ T G PPA + +LP V V +EH L C +CKD
Sbjct: 185 GANGLDAI-ITQLLNQFENT-----GPPPADKEKIQALPTVPVTEEHVG-SGLECPVCKD 237
Query: 375 LLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
G V +LPC HL+H CI PWL +SCP+CR L
Sbjct: 238 DYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 321 ARGFEELLSHLA-ETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSG 379
A G + +++ L + +N+ G PPA + +LP V V +EH L C +CK+ G
Sbjct: 185 ANGLDTIITQLLNQFENT--GPPPADKEKIQALPTVPVTEEHVG-SGLECPVCKEDYALG 241
Query: 380 TEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
V +LPC HL+H +CI PWL +SCP+CR L
Sbjct: 242 ESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 321 ARGFEELLSHLA-ETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSG 379
A G + +++ L + +N+ G PPA + +LP + + +EH L C +CK+ G
Sbjct: 181 ANGLDTIITQLLNQFENT--GPPPADTEKIQALPTIQITEEHVGS-GLECPVCKEDYTVG 237
Query: 380 TEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
V +LPC HL+H CI PWL ++CP+CR L
Sbjct: 238 ESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 321 ARGFEELLSHLA-ETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSG 379
A G + +++ L + +N+ G PPA + +LP + + +EH L C +CK+ G
Sbjct: 182 ANGLDTIITQLLNQFENT--GPPPADTDKIQALPTIQITEEHVG-FGLECPVCKEDYTVG 238
Query: 380 TEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
V +LPC HL+H CI PWL ++CP+CR L
Sbjct: 239 ESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 292 EGRQRLTRNIFANLEEVELIGTSGGDYLDARGFEELLSHLAETDNSRRGAPPA-----AV 346
EG N+F+N+ L G G ARG ++++S L E PA A
Sbjct: 322 EGEPFNPANMFSNI--FNLSGNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAK 379
Query: 347 SSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSC 406
V P+ ++++E + C IC ++ +VI+LPC H +H+ CI PWL +C
Sbjct: 380 MKVQKPPKELIDEEGE------CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTC 433
Query: 407 PLCRYELPTDDKEYEEGKQNISSRIEVHGIQQHGGIEDSSSDASDEAESVEAREF 461
+CR P D + +N +S +G S+S +D+ ++ F
Sbjct: 434 AICR--APVDPNSQQ---RNNTSTDSANGHNPSNHANPSTSTTNDQGATLRNESF 483
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 341 APPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWL 400
P A+ ++ LP + K + DL C++CK+ G + LPC H +H+ CI WL
Sbjct: 43 VPEASKRAILELPVHEIVKSDEGG-DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWL 101
Query: 401 SARNSCPLCRYELPTDDKEYEE 422
NSCPLCRYEL TDD YEE
Sbjct: 102 KKTNSCPLCRYELETDDPVYEE 123
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 321 ARGFEELLSHLA-ETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSG 379
A G + +++ L + +N+ G PPA + +LP + + +EH L C +CK+ G
Sbjct: 182 ANGLDTIITQLLNQFENT--GPPPADNEKIQALPTIQITEEHVGS-GLECPVCKEDYTVG 238
Query: 380 TEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
V +LPC HL+H CI PWL ++CP+CR L
Sbjct: 239 ECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 321 ARGFEELLSHLAETD-NSRRGAPPAAVSSVNSLPRVIVNKEHQK-QEDLVCAICKDLLPS 378
A+ E L+HL + PPA+ S+++LP ++V ++H +++ C IC
Sbjct: 480 AQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVK 539
Query: 379 GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414
G +LPC H +H+ C+ WL +CP+CR P
Sbjct: 540 GEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 321 ARGFEELLSHLAETD-NSRRGAPPAAVSSVNSLPRVIVNKEHQK-QEDLVCAICKDLLPS 378
A+ E L+HL + PPA+ S+++LP ++V ++H +++ C IC
Sbjct: 545 AQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVK 604
Query: 379 GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414
G +LPC H +H+ C+ WL +CP+CR P
Sbjct: 605 GEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 31/196 (15%)
Query: 231 EEEEDGEWE---EADMEEDTVESVVVRPQLRNYFSSPSERNVPVNRSWPFQSPEFEGIFR 287
+ E WE EA + T + P L +Y + P ++ + + P P+ G
Sbjct: 801 QAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHHLQLG-ALPLMVPDMAGYPH 859
Query: 288 WRTREGRQRLTRNIFANLEEVELIGTSGGDYLDARGFEELLSHLAE-TDNSRRGAPPAAV 346
R I + L+ G G+ FEEL+ HL E N RGA +
Sbjct: 860 IRY----------ISSGLDGTSFRGPFRGN------FEELI-HLEERLGNVNRGASQGTI 902
Query: 347 SSVNSLPRVIVNKEHQKQEDLV---------CAICKDLLPSGTEVIKLPCFHLYHQTCIF 397
+ K H KQ+ C IC +L G +V +LPC HL+HQ C+
Sbjct: 903 ERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVD 962
Query: 398 PWLSARNSCPLCRYEL 413
WL CP+CR ++
Sbjct: 963 QWLITNKKCPICRVDI 978
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 321 ARGFEELLSHLAETD-NSRRGAPPAAVSSVNSLPRVIVNKEHQK-QEDLVCAICKDLLPS 378
A+ E L+HL + PPA+ S++ LP +V ++H ++ C IC
Sbjct: 584 AQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIK 643
Query: 379 GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414
+LPC H +H+ C+ WL +CP+CR P
Sbjct: 644 DDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 321 ARGFEELLSHLAETD-NSRRGAPPAAVSSVNSLPRVIVNKEHQK-QEDLVCAICKDLLPS 378
A+ E L+HL + PPA+ S++ LP +V ++H ++ C IC
Sbjct: 584 AQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIK 643
Query: 379 GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414
+LPC H +H+ C+ WL +CP+CR P
Sbjct: 644 DDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 321 ARGFEELLSHLAETD-NSRRGAPPAAVSSVNSLPRVIVNKEHQK-QEDLVCAICKDLLPS 378
A+ E L+HL + PPA+ S++ LP +V ++H ++ C IC
Sbjct: 583 AQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIK 642
Query: 379 GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414
+LPC H +H+ C+ WL +CP+CR P
Sbjct: 643 DDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 321 ARGFEELLSHLAETD-NSRRGAPPAAVSSVNSLPRVIVNKEHQK-QEDLVCAICKDLLPS 378
A+ E L+HL + PPA+ S++ LP +V ++H ++ C IC
Sbjct: 583 AQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIK 642
Query: 379 GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414
+LPC H +H+ C+ WL +CP+CR P
Sbjct: 643 DDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 234 EDGEWE---EADMEEDTVESVVVRPQLRNYFSSPSERNVPVNRSWPFQSPEFEGIFRWRT 290
E WE EA + T + P L +Y + P ++ + + P P+ G R
Sbjct: 804 ERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHHLQLG-ALPLMVPDMAGYPHIRY 862
Query: 291 REGRQRLTRNIFANLEEVELIGTSGGDYLDARGFEELLSHLAE-TDNSRRGAPPAAVSSV 349
I + L+ G G+ FEEL+ HL E N RGA +
Sbjct: 863 ----------ISSGLDGTSFRGPFRGN------FEELI-HLEERLGNVNRGASQGTIERC 905
Query: 350 ---NSLPRVIVN-----KEHQKQEDLV---------CAICKDLLPSGTEVIKLPCFHLYH 392
+ +V + K H KQ+ C IC +L G +V +LPC HL+H
Sbjct: 906 TYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFH 965
Query: 393 QTCIFPWLSARNSCPLCRYEL 413
Q C+ WL CP+CR ++
Sbjct: 966 QVCVDQWLITNKKCPICRVDI 986
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 234 EDGEWE---EADMEEDTVESVVVRPQLRNYFSSPSERNVPVNRSWPFQSPEFEGIFRWRT 290
E WE EA + T + P L +Y + P ++ + + P P+ G
Sbjct: 799 ERTAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHHLQLG-ALPLMVPDMAGYPH--- 854
Query: 291 REGRQRLTRNIFANLEEVELIGTSGGDYLDARGFEELLSHLAE-TDNSRRGAPPAAVSSV 349
R I + L+ G G+ FEEL+ HL E N RGA +
Sbjct: 855 -------IRYISSGLDGASFRGPFRGN------FEELI-HLEERLGNVNRGASQGTIERC 900
Query: 350 ---NSLPRVIVN-----KEHQKQEDLV---------CAICKDLLPSGTEVIKLPCFHLYH 392
+ +V + K H KQ+ C IC +L G +V +LPC HL+H
Sbjct: 901 TYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFH 960
Query: 393 QTCIFPWLSARNSCPLCRYEL 413
Q C+ WL CP+CR ++
Sbjct: 961 QVCVDQWLITNKKCPICRVDI 981
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
C IC +L G +V +LPC HL+HQ C+ WL CP+CR ++ T
Sbjct: 902 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 948
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
C IC +L G +V +LPC HL+HQ C+ WL CP+CR ++ T
Sbjct: 907 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 953
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
C IC +L G +V +LPC HL+HQ C+ WL CP+CR ++ T
Sbjct: 915 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 961
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
C IC +L G +V +LPC HL+HQ C+ WL CP+CR ++ T
Sbjct: 871 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 917
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
D C IC +L G +V +LPC HL+HQ C+ WL+ CP+CR ++ T
Sbjct: 291 DEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 340
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415
D C IC +L G +V +LPC HL+HQ C+ WL+ CP+CR ++ T
Sbjct: 292 DEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 341
>sp|P30631|YOUD_CAEEL Uncharacterized RING finger protein ZK637.14 OS=Caenorhabditis
elegans GN=ZK637.14 PE=4 SV=2
Length = 161
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 340 GAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPS--------------------- 378
G+ P S +L + Q++ED CAIC D L +
Sbjct: 43 GSLPIDKKSYKALRLMDRETTDQQKEDATCAICLDNLQNNVDIPEDHVIKEELKIDPTTF 102
Query: 379 GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYEEGKQ 425
GT VI +PC H +H C+ WL A+ +CP CR ++ TD + EE +Q
Sbjct: 103 GTTVIVMPCKHRFHYFCLTLWLEAQQTCPTCRQKVKTDKEVEEEERQ 149
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 369 CAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDDKEYEEGKQNIS 428
CAIC + G E+ +PC H +H+ C+ PWL ++CP CR+ + D K+ G +
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNI-IDQKKGNPGAVCLD 325
Query: 429 SRIEVHGIQQ 438
VHG QQ
Sbjct: 326 PGNPVHGRQQ 335
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
ED C IC G E+ LPC H +H TCI WL R +CPLC+Y +
Sbjct: 303 EDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL---------PTDDK 418
VCAIC + G E+ + C H +H+TC+ PWL +CPLC + + P
Sbjct: 271 VCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEGDSFSQAPAASP 330
Query: 419 EYEEGKQNISSRIEVHGIQQHGG 441
Y+E + + H I+QH G
Sbjct: 331 SYQEPGRRL------HLIRQHPG 347
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCR 410
C++C G ++ KLPC H YH CI WLS ++CP+CR
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 366 DLVCAICKDLLPSGTE--VIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414
DL C IC D + E K+PC H++ + C+ WL +CPLCR E+P
Sbjct: 104 DLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 358 NKEHQKQED-LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRY 411
N+ + ED L C++C + + G V LPC H +H CI PWL + +CP+C++
Sbjct: 199 NESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKF 253
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
QED C IC GTE+ +LPC H +H +C+ WL +CPLC+Y +
Sbjct: 348 QEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNI 397
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCR 410
C++C G ++ KLPC H YH CI WLS ++CP+CR
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCR 410
C++C G ++ KLPC H YH CI WLS ++CP+CR
Sbjct: 567 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 609
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCR 410
C++C G ++ KLPC H YH CI WLS ++CP+CR
Sbjct: 584 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 626
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCR 410
C++C G ++ KLPC H YH CI WLS ++CP+CR
Sbjct: 702 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 744
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 345 AVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN 404
AV +NSLP + H ++ D VCAIC + + PC H +H C+ WL ++
Sbjct: 525 AVKKINSLPEI--KGSHLQEIDDVCAICYHEFTTSARIT--PCNHYFHALCLRKWLYIQD 580
Query: 405 SCPLCRYELPTDDK 418
+CP+C ++ +D+
Sbjct: 581 TCPMCHQKVYIEDE 594
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
Query: 318 YLDARGFEELLSHLAETDNSRRGAPPAAVSSVNSLPRVIVNKEHQKQEDLVCAICKDLLP 377
YL R F++ ++ + SRR A+ ++N+L +E Q ++ VC IC++ +
Sbjct: 243 YLAMRQFKKAVT---DAVMSRR-----AIRNMNTLYPDATAEELQAMDN-VCIICREEMV 293
Query: 378 SGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413
SG + +LPC H++H +C+ W + +CP CR ++
Sbjct: 294 SGAK--RLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,218,795
Number of Sequences: 539616
Number of extensions: 10403044
Number of successful extensions: 86830
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 533
Number of HSP's that attempted gapping in prelim test: 58546
Number of HSP's gapped (non-prelim): 13423
length of query: 544
length of database: 191,569,459
effective HSP length: 122
effective length of query: 422
effective length of database: 125,736,307
effective search space: 53060721554
effective search space used: 53060721554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)