Query 009095
Match_columns 544
No_of_seqs 440 out of 2007
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 1.5E-15 5.2E-20 128.4 6.4 78 338-415 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.1E-15 3.9E-20 124.0 3.7 70 347-416 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.4 2.5E-13 8.6E-18 103.3 5.1 50 365-414 4-54 (55)
4 2ect_A Ring finger protein 126 99.4 4.3E-13 1.5E-17 109.2 5.8 54 364-417 13-66 (78)
5 2kiz_A E3 ubiquitin-protein li 99.4 3.8E-13 1.3E-17 107.1 4.7 53 364-416 12-64 (69)
6 2ep4_A Ring finger protein 24; 99.3 5E-13 1.7E-17 107.8 4.2 53 364-416 13-65 (74)
7 2ecm_A Ring finger and CHY zin 99.3 2.7E-12 9.4E-17 97.4 4.8 50 365-414 4-54 (55)
8 1v87_A Deltex protein 2; ring- 99.2 4.3E-12 1.5E-16 110.4 4.2 51 366-416 25-95 (114)
9 2ecl_A Ring-box protein 2; RNF 99.2 3E-12 1E-16 106.1 2.3 50 366-415 15-76 (81)
10 3dpl_R Ring-box protein 1; ubi 99.2 7.9E-12 2.7E-16 109.6 5.1 50 365-414 36-100 (106)
11 2ea6_A Ring finger protein 4; 99.2 4.8E-12 1.6E-16 99.8 2.8 52 364-415 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.2 5E-12 1.7E-16 100.6 2.5 54 364-417 8-65 (71)
13 2d8t_A Dactylidin, ring finger 99.2 1E-11 3.4E-16 99.8 4.2 49 364-415 13-61 (71)
14 2xeu_A Ring finger protein 4; 99.2 5.6E-12 1.9E-16 98.0 1.7 52 366-417 3-58 (64)
15 2ecn_A Ring finger protein 141 99.2 6.7E-12 2.3E-16 100.1 1.9 50 364-417 13-62 (70)
16 2djb_A Polycomb group ring fin 99.2 1.7E-11 5.8E-16 98.7 4.1 51 364-417 13-64 (72)
17 1chc_A Equine herpes virus-1 r 99.1 2.2E-11 7.7E-16 96.3 4.2 49 365-415 4-52 (68)
18 2ysl_A Tripartite motif-contai 99.1 3.7E-11 1.3E-15 96.2 5.2 50 364-416 18-70 (73)
19 2ct2_A Tripartite motif protei 99.1 3.5E-11 1.2E-15 99.4 4.9 53 364-416 13-69 (88)
20 4ayc_A E3 ubiquitin-protein li 99.1 2.2E-11 7.5E-16 110.2 4.0 48 366-416 53-100 (138)
21 2csy_A Zinc finger protein 183 99.1 3.3E-11 1.1E-15 99.0 4.2 48 364-414 13-60 (81)
22 2yur_A Retinoblastoma-binding 99.1 3.7E-11 1.3E-15 97.4 4.5 51 364-417 13-66 (74)
23 1t1h_A Gspef-atpub14, armadill 99.1 3.9E-11 1.3E-15 97.6 3.3 51 364-417 6-57 (78)
24 2egp_A Tripartite motif-contai 99.1 3.1E-11 1.1E-15 97.9 2.5 50 364-416 10-66 (79)
25 2ecy_A TNF receptor-associated 99.1 4.4E-11 1.5E-15 94.5 2.7 50 364-416 13-63 (66)
26 3lrq_A E3 ubiquitin-protein li 99.1 3.4E-11 1.2E-15 103.3 2.0 48 366-416 22-71 (100)
27 4a0k_B E3 ubiquitin-protein li 99.0 1.9E-11 6.5E-16 109.1 -0.1 51 365-415 47-112 (117)
28 2ecw_A Tripartite motif-contai 99.0 7.2E-11 2.5E-15 96.4 3.4 50 364-416 17-72 (85)
29 2d8s_A Cellular modulator of i 99.0 9E-11 3.1E-15 97.9 4.0 53 364-417 13-72 (80)
30 2ecv_A Tripartite motif-contai 99.0 8.4E-11 2.9E-15 96.0 3.1 50 364-416 17-72 (85)
31 2ysj_A Tripartite motif-contai 99.0 2.3E-10 7.8E-15 89.5 4.2 43 364-409 18-63 (63)
32 2y43_A E3 ubiquitin-protein li 99.0 2E-10 6.8E-15 97.7 4.0 47 366-415 22-69 (99)
33 3ztg_A E3 ubiquitin-protein li 99.0 2.4E-10 8.2E-15 95.7 4.2 48 364-414 11-61 (92)
34 3fl2_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 101.7 3.9 47 366-415 52-99 (124)
35 2ckl_A Polycomb group ring fin 99.0 2.2E-10 7.5E-15 99.1 3.8 49 365-416 14-63 (108)
36 4ap4_A E3 ubiquitin ligase RNF 98.9 2.2E-10 7.5E-15 100.7 2.7 53 365-417 6-62 (133)
37 2ecj_A Tripartite motif-contai 98.9 4.1E-10 1.4E-14 86.0 3.2 43 364-409 13-58 (58)
38 1jm7_A BRCA1, breast cancer ty 98.9 4E-10 1.4E-14 97.2 3.0 49 366-417 21-72 (112)
39 3l11_A E3 ubiquitin-protein li 98.9 4.7E-10 1.6E-14 97.9 3.0 47 366-415 15-62 (115)
40 1g25_A CDK-activating kinase a 98.9 5.6E-10 1.9E-14 87.9 3.0 52 366-417 3-57 (65)
41 2ckl_B Ubiquitin ligase protei 98.9 5.7E-10 2E-14 103.4 3.5 47 366-415 54-102 (165)
42 2ct0_A Non-SMC element 1 homol 98.9 8.3E-10 2.9E-14 91.1 3.9 51 365-417 14-66 (74)
43 1z6u_A NP95-like ring finger p 98.9 7.5E-10 2.6E-14 102.1 4.0 48 366-416 78-126 (150)
44 4ap4_A E3 ubiquitin ligase RNF 98.9 3.5E-10 1.2E-14 99.4 1.6 53 364-416 70-126 (133)
45 2kr4_A Ubiquitin conjugation f 98.9 7.4E-10 2.5E-14 92.8 3.1 49 365-416 13-61 (85)
46 2kre_A Ubiquitin conjugation f 98.9 1E-09 3.6E-14 94.8 4.1 51 364-417 27-77 (100)
47 1wgm_A Ubiquitin conjugation f 98.9 1.1E-09 3.6E-14 94.5 3.6 51 364-417 20-71 (98)
48 3hct_A TNF receptor-associated 98.8 9.3E-10 3.2E-14 96.8 3.1 50 364-416 16-66 (118)
49 1bor_A Transcription factor PM 98.8 1.1E-09 3.8E-14 84.5 2.7 48 364-417 4-51 (56)
50 1rmd_A RAG1; V(D)J recombinati 98.8 1.6E-09 5.5E-14 94.7 2.9 48 366-416 23-71 (116)
51 1jm7_B BARD1, BRCA1-associated 98.8 1.9E-09 6.5E-14 94.7 2.5 47 366-417 22-69 (117)
52 3knv_A TNF receptor-associated 98.7 2.6E-09 9E-14 97.6 1.5 50 364-416 29-79 (141)
53 2c2l_A CHIP, carboxy terminus 98.7 5.5E-09 1.9E-13 102.5 3.6 49 365-416 207-256 (281)
54 1e4u_A Transcriptional repress 98.7 5.5E-09 1.9E-13 86.6 2.9 53 364-417 9-64 (78)
55 2y1n_A E3 ubiquitin-protein li 98.7 7E-09 2.4E-13 109.3 4.2 47 366-415 332-379 (389)
56 2yu4_A E3 SUMO-protein ligase 98.7 6E-09 2.1E-13 88.6 2.5 48 365-415 6-63 (94)
57 2vje_A E3 ubiquitin-protein li 98.7 7.2E-09 2.5E-13 82.3 2.6 47 365-414 7-56 (64)
58 4ic3_A E3 ubiquitin-protein li 98.6 1.1E-08 3.8E-13 83.1 3.1 43 366-415 24-67 (74)
59 2vje_B MDM4 protein; proto-onc 98.6 1.2E-08 4.1E-13 80.8 2.4 46 366-414 7-55 (63)
60 3hcs_A TNF receptor-associated 98.5 3E-08 1E-12 92.1 2.8 50 364-416 16-66 (170)
61 2f42_A STIP1 homology and U-bo 98.5 4.5E-08 1.5E-12 93.3 3.0 50 364-416 104-154 (179)
62 3k1l_B Fancl; UBC, ring, RWD, 98.4 5.3E-08 1.8E-12 101.0 2.2 53 364-416 306-374 (381)
63 2ecg_A Baculoviral IAP repeat- 98.4 6.8E-08 2.3E-12 78.5 2.3 44 366-416 25-69 (75)
64 2ea5_A Cell growth regulator w 98.4 2.2E-07 7.4E-12 74.8 4.1 45 364-415 13-58 (68)
65 2yho_A E3 ubiquitin-protein li 98.3 2E-07 6.8E-12 77.0 2.9 44 366-416 18-62 (79)
66 3t6p_A Baculoviral IAP repeat- 98.3 3.9E-07 1.3E-11 94.8 4.1 44 365-415 294-338 (345)
67 2bay_A PRE-mRNA splicing facto 98.3 2.2E-07 7.6E-12 73.4 1.7 47 367-416 4-51 (61)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.2 4E-07 1.4E-11 71.9 2.1 49 364-415 4-59 (60)
69 1wim_A KIAA0161 protein; ring 98.2 4E-07 1.4E-11 76.8 2.0 48 365-412 4-61 (94)
70 3htk_C E3 SUMO-protein ligase 98.2 3.2E-07 1.1E-11 92.1 1.1 52 364-418 179-235 (267)
71 3vk6_A E3 ubiquitin-protein li 97.6 2.2E-05 7.6E-10 68.1 3.1 46 368-415 3-49 (101)
72 3nw0_A Non-structural maintena 97.5 2.7E-05 9.2E-10 77.1 2.3 50 366-417 180-231 (238)
73 2ko5_A Ring finger protein Z; 94.4 0.02 6.9E-07 49.1 2.8 49 364-417 26-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.068 2.3E-06 44.9 3.2 35 366-400 3-38 (101)
75 2lri_C Autoimmune regulator; Z 90.2 0.31 1.1E-05 38.9 4.5 46 365-413 11-60 (66)
76 1we9_A PHD finger family prote 85.2 0.46 1.6E-05 37.0 2.5 49 364-412 4-58 (64)
77 2k16_A Transcription initiatio 81.8 0.87 3E-05 36.5 2.9 50 365-415 17-71 (75)
78 3lqh_A Histone-lysine N-methyl 80.9 1.4 4.8E-05 41.8 4.4 48 367-414 3-65 (183)
79 1f62_A Transcription factor WS 80.3 1.5 5.2E-05 32.5 3.6 44 368-411 2-49 (51)
80 2l5u_A Chromodomain-helicase-D 79.5 1.5 5.1E-05 34.1 3.5 46 364-412 9-58 (61)
81 3o36_A Transcription intermedi 79.2 1.2 4E-05 41.6 3.3 45 366-413 4-52 (184)
82 1mm2_A MI2-beta; PHD, zinc fin 79.1 1.5 5.2E-05 34.1 3.4 47 364-413 7-57 (61)
83 3m62_A Ubiquitin conjugation f 78.8 1.1 3.9E-05 52.1 3.7 50 364-416 889-939 (968)
84 1wil_A KIAA1045 protein; ring 78.6 1.3 4.4E-05 37.4 2.9 31 365-399 14-47 (89)
85 3u5n_A E3 ubiquitin-protein li 78.1 1.3 4.5E-05 42.1 3.4 45 365-413 6-55 (207)
86 2yql_A PHD finger protein 21A; 76.8 0.96 3.3E-05 34.5 1.6 45 364-411 7-55 (56)
87 1fp0_A KAP-1 corepressor; PHD 75.8 2.7 9.4E-05 35.4 4.3 47 364-413 23-73 (88)
88 2xb1_A Pygopus homolog 2, B-ce 74.4 1.2 4.3E-05 38.3 1.9 49 366-414 3-63 (105)
89 2puy_A PHD finger protein 21A; 72.8 0.8 2.7E-05 35.3 0.2 46 365-413 4-53 (60)
90 2lv9_A Histone-lysine N-methyl 72.1 3.3 0.00011 35.2 3.9 45 367-412 29-76 (98)
91 2ysm_A Myeloid/lymphoid or mix 69.8 4 0.00014 34.9 4.0 47 364-410 5-55 (111)
92 1weu_A Inhibitor of growth fam 67.9 4.8 0.00016 34.1 4.0 47 365-413 35-86 (91)
93 1xwh_A Autoimmune regulator; P 67.1 2.3 7.8E-05 33.5 1.7 46 364-412 6-55 (66)
94 3v43_A Histone acetyltransfera 66.5 5 0.00017 34.6 4.0 44 368-411 63-111 (112)
95 2kgg_A Histone demethylase jar 65.7 5.8 0.0002 29.6 3.7 44 367-410 3-52 (52)
96 2ro1_A Transcription intermedi 62.6 3.9 0.00013 38.6 2.7 43 367-412 3-49 (189)
97 1wep_A PHF8; structural genomi 62.5 9 0.00031 31.0 4.6 47 366-413 12-64 (79)
98 2yt5_A Metal-response element- 62.2 4 0.00014 31.7 2.3 51 364-414 4-63 (66)
99 2e6r_A Jumonji/ARID domain-con 61.7 1.8 6.1E-05 36.5 0.2 48 365-412 15-66 (92)
100 1wen_A Inhibitor of growth fam 61.3 8.2 0.00028 30.9 4.0 45 365-413 15-66 (71)
101 2e6s_A E3 ubiquitin-protein li 60.3 5 0.00017 32.7 2.7 45 367-411 27-76 (77)
102 1wem_A Death associated transc 60.1 3.5 0.00012 33.1 1.7 47 366-413 16-71 (76)
103 3i2d_A E3 SUMO-protein ligase 58.6 5.2 0.00018 41.9 3.0 49 367-418 250-303 (371)
104 3shb_A E3 ubiquitin-protein li 56.9 4.9 0.00017 32.9 2.0 26 386-411 46-76 (77)
105 3asl_A E3 ubiquitin-protein li 56.2 5.2 0.00018 31.9 2.1 43 368-411 20-68 (70)
106 3o70_A PHD finger protein 13; 56.0 5 0.00017 31.9 1.9 47 364-411 17-66 (68)
107 4fo9_A E3 SUMO-protein ligase 55.8 6.2 0.00021 41.2 3.1 49 367-418 216-269 (360)
108 1wee_A PHD finger family prote 55.1 5 0.00017 31.9 1.8 48 365-413 15-67 (72)
109 1wev_A Riken cDNA 1110020M19; 55.0 4 0.00014 34.0 1.2 49 366-414 16-74 (88)
110 2cs3_A Protein C14ORF4, MY039 53.6 7.1 0.00024 32.7 2.5 38 364-402 13-52 (93)
111 1wew_A DNA-binding family prot 49.7 6.8 0.00023 31.7 1.8 48 365-413 15-73 (78)
112 2vpb_A Hpygo1, pygopus homolog 48.8 12 0.00039 29.6 2.9 33 365-397 7-41 (65)
113 2ri7_A Nucleosome-remodeling f 48.1 4.6 0.00016 37.0 0.5 47 365-412 7-59 (174)
114 2a20_A Regulating synaptic mem 47.4 5.1 0.00017 31.6 0.6 48 364-411 7-59 (62)
115 3zyq_A Hepatocyte growth facto 46.0 24 0.00082 34.0 5.3 48 366-413 164-220 (226)
116 3ask_A E3 ubiquitin-protein li 45.8 8.8 0.0003 37.6 2.2 45 367-411 175-224 (226)
117 2cu8_A Cysteine-rich protein 2 44.6 17 0.00058 28.3 3.4 41 366-416 9-49 (76)
118 2jmi_A Protein YNG1, ING1 homo 43.4 5.9 0.0002 33.5 0.4 46 364-411 24-75 (90)
119 1zbd_B Rabphilin-3A; G protein 43.1 9.9 0.00034 34.2 1.9 34 11-51 53-87 (134)
120 1iml_A CRIP, cysteine rich int 42.6 12 0.00041 29.2 2.2 38 368-415 2-39 (76)
121 2ysm_A Myeloid/lymphoid or mix 42.6 9.8 0.00034 32.4 1.8 46 368-413 56-105 (111)
122 1y02_A CARP2, FYVE-ring finger 42.3 5.5 0.00019 35.3 0.1 48 367-414 20-68 (120)
123 2lbm_A Transcriptional regulat 41.7 26 0.00089 31.9 4.5 45 364-411 61-116 (142)
124 2kwj_A Zinc finger protein DPF 40.8 5 0.00017 34.7 -0.4 46 368-413 60-109 (114)
125 2l43_A N-teminal domain from h 40.5 11 0.00039 31.3 1.8 53 364-416 23-79 (88)
126 3v43_A Histone acetyltransfera 40.4 27 0.00091 30.0 4.2 33 366-398 5-43 (112)
127 2dj7_A Actin-binding LIM prote 39.5 22 0.00075 28.3 3.3 39 366-414 15-53 (80)
128 2ku3_A Bromodomain-containing 39.1 10 0.00036 30.3 1.3 49 364-412 14-66 (71)
129 1z60_A TFIIH basal transcripti 37.4 12 0.00042 29.2 1.4 43 367-409 16-58 (59)
130 2csz_A Synaptotagmin-like prot 37.3 13 0.00043 30.7 1.5 36 10-51 22-57 (76)
131 2d8v_A Zinc finger FYVE domain 37.2 17 0.00057 29.2 2.2 30 365-398 7-37 (67)
132 2co8_A NEDD9 interacting prote 37.2 26 0.0009 27.9 3.4 43 365-417 14-56 (82)
133 3t7l_A Zinc finger FYVE domain 36.8 19 0.00063 30.0 2.5 35 366-400 20-55 (90)
134 1joc_A EEA1, early endosomal a 36.1 23 0.00079 31.2 3.2 35 366-400 69-104 (125)
135 1dvp_A HRS, hepatocyte growth 35.7 22 0.00074 33.9 3.2 35 366-400 161-196 (220)
136 2zet_C Melanophilin; complex, 34.9 8.2 0.00028 35.5 0.0 47 365-412 67-117 (153)
137 2zet_C Melanophilin; complex, 34.7 16 0.00056 33.5 2.0 34 12-51 67-100 (153)
138 2vnf_A ING 4, P29ING4, inhibit 34.4 9.7 0.00033 29.4 0.4 41 367-411 11-58 (60)
139 4gne_A Histone-lysine N-methyl 34.3 30 0.001 29.9 3.5 46 364-415 13-65 (107)
140 1zbd_B Rabphilin-3A; G protein 34.2 22 0.00076 31.9 2.7 48 365-412 54-107 (134)
141 3c6w_A P28ING5, inhibitor of g 34.1 10 0.00035 29.3 0.4 42 366-411 9-57 (59)
142 1z2q_A LM5-1; membrane protein 33.7 33 0.0011 27.9 3.6 35 365-399 20-55 (84)
143 1d4u_A Nucleotide excision rep 32.6 17 0.00059 31.8 1.7 30 14-45 6-35 (111)
144 2rsd_A E3 SUMO-protein ligase 32.2 13 0.00044 29.2 0.8 43 367-411 11-64 (68)
145 1x4k_A Skeletal muscle LIM-pro 31.7 42 0.0014 25.5 3.7 41 367-416 6-46 (72)
146 1wfk_A Zinc finger, FYVE domai 31.5 36 0.0012 28.2 3.4 35 366-400 9-44 (88)
147 1a7i_A QCRP2 (LIM1); LIM domai 31.5 26 0.0009 27.5 2.5 41 366-416 7-47 (81)
148 2yw8_A RUN and FYVE domain-con 31.1 33 0.0011 27.8 3.1 35 366-400 19-54 (82)
149 3ql9_A Transcriptional regulat 30.3 50 0.0017 29.5 4.4 44 364-411 55-110 (129)
150 2pk7_A Uncharacterized protein 30.0 21 0.0007 28.7 1.6 34 13-51 8-41 (69)
151 1x4u_A Zinc finger, FYVE domai 30.0 39 0.0013 27.4 3.4 34 366-399 14-48 (84)
152 1wyh_A SLIM 2, skeletal muscle 29.9 39 0.0013 25.7 3.2 41 367-416 6-46 (72)
153 3mpx_A FYVE, rhogef and PH dom 29.8 11 0.00038 38.9 0.0 48 366-413 375-430 (434)
154 1x63_A Skeletal muscle LIM-pro 29.7 50 0.0017 25.8 3.9 41 367-416 16-56 (82)
155 1vfy_A Phosphatidylinositol-3- 29.6 36 0.0012 27.0 3.0 33 367-399 12-45 (73)
156 1weo_A Cellulose synthase, cat 29.0 34 0.0012 29.0 2.8 50 366-415 16-70 (93)
157 3kv5_D JMJC domain-containing 28.2 15 0.00052 39.6 0.7 46 368-413 38-89 (488)
158 1x62_A C-terminal LIM domain p 27.1 42 0.0014 26.3 3.0 38 366-414 15-52 (79)
159 1wd2_A Ariadne-1 protein homol 26.9 27 0.00092 27.0 1.7 36 367-402 7-47 (60)
160 1g47_A Pinch protein; LIM doma 26.7 48 0.0017 25.5 3.3 42 366-416 11-52 (77)
161 1x4l_A Skeletal muscle LIM-pro 26.5 63 0.0021 24.6 3.9 41 366-415 5-47 (72)
162 2dar_A PDZ and LIM domain prot 26.4 34 0.0012 27.5 2.4 39 366-415 25-63 (90)
163 2l4z_A DNA endonuclease RBBP8, 26.2 39 0.0013 29.3 2.9 39 366-414 61-99 (123)
164 1x61_A Thyroid receptor intera 26.0 55 0.0019 24.8 3.5 40 366-414 5-44 (72)
165 2d8x_A Protein pinch; LIM doma 25.8 60 0.0021 24.5 3.6 40 366-416 5-44 (70)
166 1v6g_A Actin binding LIM prote 25.8 58 0.002 25.4 3.6 39 367-416 16-54 (81)
167 3f6q_B LIM and senescent cell 25.8 52 0.0018 24.6 3.3 42 366-416 11-52 (72)
168 2jne_A Hypothetical protein YF 25.6 19 0.00063 31.1 0.6 40 5-44 24-69 (101)
169 2hf1_A Tetraacyldisaccharide-1 25.5 23 0.0008 28.2 1.2 34 13-51 8-41 (68)
170 2jne_A Hypothetical protein YF 25.5 15 0.0005 31.7 -0.0 40 367-414 33-72 (101)
171 1x64_A Alpha-actinin-2 associa 25.5 48 0.0016 26.6 3.1 40 366-416 25-64 (89)
172 2kwj_A Zinc finger protein DPF 25.2 41 0.0014 28.9 2.8 33 367-399 2-41 (114)
173 2elr_A Zinc finger protein 406 24.9 31 0.001 21.6 1.5 17 9-25 5-21 (36)
174 2ct7_A Ring finger protein 31; 24.8 34 0.0012 27.9 2.1 36 369-404 28-66 (86)
175 2gmg_A Hypothetical protein PF 24.5 25 0.00086 30.6 1.3 26 384-414 70-95 (105)
176 2odd_A Protein CBFA2T1; MYND z 24.4 28 0.00094 26.8 1.4 32 3-46 7-38 (64)
177 2js4_A UPF0434 protein BB2007; 24.0 25 0.00085 28.3 1.1 30 13-47 8-37 (70)
178 1f15_A Coat protein; beta barr 23.9 17 0.00057 34.8 0.0 35 59-93 14-48 (218)
179 1jy4_A B4dimer; eight-stranded 23.5 26 0.00088 24.0 0.9 7 40-46 2-8 (35)
180 2jny_A Uncharacterized BCR; st 23.3 27 0.00094 27.8 1.2 34 13-51 10-43 (67)
181 2fiy_A Protein FDHE homolog; F 23.0 15 0.00053 37.3 -0.4 45 366-412 182-231 (309)
182 2d8z_A Four and A half LIM dom 22.8 69 0.0024 24.1 3.4 38 367-415 6-43 (70)
183 2d8y_A Eplin protein; LIM doma 22.3 71 0.0024 25.6 3.6 41 366-416 15-55 (91)
184 1x68_A FHL5 protein; four-and- 22.2 59 0.002 25.1 3.0 40 367-415 6-47 (76)
185 2jmo_A Parkin; IBR, E3 ligase, 22.1 25 0.00086 28.5 0.8 20 386-407 55-74 (80)
186 1vfy_A Phosphatidylinositol-3- 21.9 43 0.0015 26.5 2.1 32 11-49 9-40 (73)
187 2l3k_A Rhombotin-2, linker, LI 21.7 39 0.0013 28.9 1.9 38 368-414 10-47 (123)
188 2jrp_A Putative cytoplasmic pr 21.6 20 0.00067 29.8 0.0 39 367-413 3-41 (81)
189 2kdx_A HYPA, hydrogenase/ureas 21.6 28 0.00096 30.1 1.0 36 4-46 64-100 (119)
190 3eyy_A Putative iron uptake re 21.3 22 0.00077 31.5 0.3 34 11-44 88-138 (145)
191 2fnf_X Putative RAS effector N 20.8 41 0.0014 26.8 1.8 28 11-47 33-60 (72)
192 1nyp_A Pinch protein; LIM doma 20.8 67 0.0023 24.0 3.0 38 367-415 6-43 (66)
193 2jr6_A UPF0434 protein NMA0874 20.6 33 0.0011 27.4 1.1 34 13-51 8-41 (68)
194 2kvf_A Zinc finger and BTB dom 20.0 28 0.00096 20.4 0.5 13 13-25 3-15 (28)
195 1faq_A RAF-1; transferase, ser 20.0 31 0.001 25.1 0.8 27 11-47 12-38 (52)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=128.45 Aligned_cols=78 Identities=32% Similarity=0.847 Sum_probs=66.4
Q ss_pred CCCCChhhHHHhhcCCcEeeccccc-cCCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 338 RRGAPPAAVSSVNSLPRVIVNKEHQ-KQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 338 ~rG~ppas~~~I~~LP~~~~~~~~~-~~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
..+..+++++.|+.||.+.+..... ......|+||++.|..+..++.|||+|.||..||..||..+.+||+||+.+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3445666788899999998876543 34567899999999888889999999999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=124.02 Aligned_cols=70 Identities=30% Similarity=0.670 Sum_probs=62.0
Q ss_pred HHhhcCCcEeeccccccCCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 347 SSVNSLPRVIVNKEHQKQEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 347 ~~I~~LP~~~~~~~~~~~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
..|+.||...+.......+...|+||++.|..+..++.|||+|.||..||.+||+.+.+||+||+.+...
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3478999999887666667789999999998888889999999999999999999999999999988654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.39 E-value=2.5e-13 Score=103.34 Aligned_cols=50 Identities=38% Similarity=0.895 Sum_probs=46.0
Q ss_pred CCCccccccccCCCCCceEEcC-CCCeeccchhhhhhccCCCCCCCccccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKLP-CFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LP-CgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
+...|+||++.|..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4578999999998888899998 9999999999999999999999999874
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=4.3e-13 Score=109.22 Aligned_cols=54 Identities=43% Similarity=1.038 Sum_probs=48.5
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
.....|+||++.|..+..++.|+|+|.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 445899999999988888889999999999999999999999999999987653
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=3.8e-13 Score=107.08 Aligned_cols=53 Identities=38% Similarity=1.034 Sum_probs=47.9
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
.....|+||++.|..+..++.+||+|.||..||.+|+..+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44578999999998888899999999999999999999999999999998654
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5e-13 Score=107.79 Aligned_cols=53 Identities=30% Similarity=0.762 Sum_probs=47.5
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
.....|+||++.|..+..++.|||+|.||..||.+|++.+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 34579999999998888888999999999999999999889999999988653
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.27 E-value=2.7e-12 Score=97.39 Aligned_cols=50 Identities=32% Similarity=0.594 Sum_probs=43.5
Q ss_pred CCCccccccccCCCC-CceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 365 EDLVCAICKDLLPSG-TEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 365 ~~~~C~ICle~~~~g-~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
....|+||++.|..+ ..++.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999999653 45788999999999999999998899999999874
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.22 E-value=4.3e-12 Score=110.43 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=42.1
Q ss_pred CCccccccccCCCCC---------------ceEEcCCCCeeccchhhhhh-----ccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGT---------------EVIKLPCFHLYHQTCIFPWL-----SARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~---------------~v~~LPCgH~FH~~CI~~WL-----~~~~tCPlCR~~l~~~ 416 (544)
+..|+||++.|..+. .++.++|+|.||..||..|| ..+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999996542 34478899999999999999 4567899999988654
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3e-12 Score=106.12 Aligned_cols=50 Identities=30% Similarity=0.706 Sum_probs=41.3
Q ss_pred CCccccccccCCC-----------CCceEEcC-CCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPS-----------GTEVIKLP-CFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~-----------g~~v~~LP-CgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
+..|+||++.|.. ++.++.++ |+|.||..||.+||..+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4678888888743 34466665 99999999999999999999999998854
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.21 E-value=7.9e-12 Score=109.55 Aligned_cols=50 Identities=34% Similarity=0.584 Sum_probs=42.9
Q ss_pred CCCccccccccCCCCC---------------ceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 365 EDLVCAICKDLLPSGT---------------EVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~---------------~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
.+..|+||++.|.... .++.++|+|.||..||.+||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578999999987531 3567899999999999999999999999999864
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4.8e-12 Score=99.84 Aligned_cols=52 Identities=27% Similarity=0.664 Sum_probs=44.0
Q ss_pred CCCCccccccccCCC----CCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 364 QEDLVCAICKDLLPS----GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 364 ~~~~~C~ICle~~~~----g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
.....|+||++.|.. +..++.++|+|.||..||..|+..+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345799999999853 2344789999999999999999989999999998854
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.19 E-value=5e-12 Score=100.64 Aligned_cols=54 Identities=26% Similarity=0.640 Sum_probs=45.5
Q ss_pred CCCCccccccccCCC----CCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPS----GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~----g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
.+...|+||++.|.. +..++.++|||.||..||.+|+..+.+||+||+.+...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 345799999999853 244588999999999999999999999999999987543
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=99.77 Aligned_cols=49 Identities=31% Similarity=0.613 Sum_probs=43.4
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
.....|+||++.+ ..++.++|+|.||..||..|+..+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3457999999998 567888999999999999999988999999998854
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.16 E-value=5.6e-12 Score=98.05 Aligned_cols=52 Identities=27% Similarity=0.650 Sum_probs=44.3
Q ss_pred CCccccccccCCC----CCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 366 DLVCAICKDLLPS----GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 366 ~~~C~ICle~~~~----g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
...|+||++.+.. +..+..++|||.||..||.+|+..+.+||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 4789999999853 234578899999999999999998999999999987643
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=6.7e-12 Score=100.09 Aligned_cols=50 Identities=32% Similarity=0.836 Sum_probs=44.0
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
.....|+||++.+.. +.+||+|.||..||.+|+..+.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 345799999999854 78999999999999999999999999999987654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=98.66 Aligned_cols=51 Identities=25% Similarity=0.697 Sum_probs=43.6
Q ss_pred CCCCccccccccCCCCCceEEc-CCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
.....|+||++.|. .++.+ +|+|.||..||..|+..+..||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34589999999994 45666 89999999999999988899999999987653
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=2.2e-11 Score=96.34 Aligned_cols=49 Identities=29% Similarity=0.777 Sum_probs=42.7
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
....|+||++.+. ..++.+||||.||..||.+|+..+.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3578999999984 335789999999999999999989999999998853
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.7e-11 Score=96.23 Aligned_cols=50 Identities=30% Similarity=0.714 Sum_probs=43.0
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhc---cCCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS---ARNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~---~~~tCPlCR~~l~~~ 416 (544)
.....|+||++.| ..++.++|||.||..||..|+. ....||+||+.+...
T Consensus 18 ~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBC---SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCccc---CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3458999999999 5677889999999999999996 456899999998764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.5e-11 Score=99.38 Aligned_cols=53 Identities=25% Similarity=0.469 Sum_probs=45.1
Q ss_pred CCCCccccccccCCCCCc-eEEcCCCCeeccchhhhhhccC---CCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTE-VIKLPCFHLYHQTCIFPWLSAR---NSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~-v~~LPCgH~FH~~CI~~WL~~~---~tCPlCR~~l~~~ 416 (544)
.+...|+||++.|..... ++.++|||.||..||..|+..+ ..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345899999999976543 8889999999999999999765 7899999988664
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=2.2e-11 Score=110.19 Aligned_cols=48 Identities=31% Similarity=0.917 Sum_probs=43.4
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
+..|+||++.| ..++.+||||.||..||..|+..+.+||+||+.+...
T Consensus 53 ~~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCccc---CCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 46899999999 5678899999999999999999999999999998654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.3e-11 Score=98.99 Aligned_cols=48 Identities=19% Similarity=0.548 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
.....|+||++.| ..++.++|+|.||..||..|+....+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3457999999999 55678999999999999999998889999999985
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.11 E-value=3.7e-11 Score=97.43 Aligned_cols=51 Identities=33% Similarity=0.798 Sum_probs=42.8
Q ss_pred CCCCccccccccCCCCCceEEcC-CCCeeccchhhhhhccC--CCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLP-CFHLYHQTCIFPWLSAR--NSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LP-CgH~FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 417 (544)
.....|+||++.| ..++.++ |||.||..||..|+..+ .+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCC---TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHH---hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3458999999999 5577899 99999999999999765 68999999765543
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=3.9e-11 Score=97.59 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=44.2
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc-CCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA-RNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~~ 417 (544)
.....|+||++.| ..++.++|||.||..||..|+.. +.+||+||+.+....
T Consensus 6 ~~~~~C~IC~~~~---~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccc---cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 3458999999999 56778899999999999999986 778999999987543
No 24
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.08 E-value=3.1e-11 Score=97.91 Aligned_cols=50 Identities=36% Similarity=0.741 Sum_probs=42.6
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc-------CCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA-------RNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~-------~~tCPlCR~~l~~~ 416 (544)
.+...|+||++.| ..++.++|||.||..||..|+.. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3458999999999 44567899999999999999976 56899999998764
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=4.4e-11 Score=94.54 Aligned_cols=50 Identities=22% Similarity=0.539 Sum_probs=41.8
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhh-ccCCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWL-SARNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL-~~~~tCPlCR~~l~~~ 416 (544)
.....|+||++.+. .++.++|||.||..||..|+ ....+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34589999999994 44568999999999999999 4567899999998654
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.05 E-value=3.4e-11 Score=103.29 Aligned_cols=48 Identities=31% Similarity=0.663 Sum_probs=42.2
Q ss_pred CCccccccccCCCCCceEE-cCCCCeeccchhhhhhccC-CCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWLSAR-NSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 416 (544)
...|+||++.| ..++. ++|||.||..||..|+..+ .+||+||+.+...
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 47999999999 45677 8999999999999999877 6999999998654
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.04 E-value=1.9e-11 Score=109.13 Aligned_cols=51 Identities=33% Similarity=0.558 Sum_probs=0.9
Q ss_pred CCCccccccccCCCCC---------------ceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 365 EDLVCAICKDLLPSGT---------------EVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~---------------~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
.+..|+||++.|.... .+..++|+|.||..||.+||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3579999999996421 23345899999999999999999999999998754
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=7.2e-11 Score=96.36 Aligned_cols=50 Identities=32% Similarity=0.804 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc------CCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA------RNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~------~~tCPlCR~~l~~~ 416 (544)
.....|+||++.| ..++.++|+|.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC---SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhh---CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3458999999999 45668999999999999999976 66899999998754
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=9e-11 Score=97.88 Aligned_cols=53 Identities=28% Similarity=0.771 Sum_probs=44.0
Q ss_pred CCCCccccccccCCCCCceEEcCCC-----CeeccchhhhhhccC--CCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCF-----HLYHQTCIFPWLSAR--NSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCg-----H~FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 417 (544)
..+..|.||+++|..+..+ ++||+ |.||..||.+||..+ .+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3457899999999876654 69996 999999999999765 48999999987653
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.4e-11 Score=95.97 Aligned_cols=50 Identities=34% Similarity=0.804 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc------CCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA------RNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~------~~tCPlCR~~l~~~ 416 (544)
.....|+||++.| ..++.++|+|.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC---SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCccc---CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3458999999999 44667899999999999999976 77899999998764
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.3e-10 Score=89.47 Aligned_cols=43 Identities=35% Similarity=0.797 Sum_probs=37.4
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhc---cCCCCCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS---ARNSCPLC 409 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~---~~~tCPlC 409 (544)
.....|+||++.| ..++.++|||.||..||.+|++ ....||+|
T Consensus 18 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBC---SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchh---CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3458999999999 5677889999999999999997 45689998
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=97.74 Aligned_cols=47 Identities=30% Similarity=0.676 Sum_probs=41.9
Q ss_pred CCccccccccCCCCCceEEc-CCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
...|+||++.| ..++.+ +|||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 47899999999 456666 899999999999999988999999998865
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.98 E-value=2.4e-10 Score=95.70 Aligned_cols=48 Identities=33% Similarity=0.809 Sum_probs=41.4
Q ss_pred CCCCccccccccCCCCCceEEcC-CCCeeccchhhhhhccC--CCCCCCccccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLP-CFHLYHQTCIFPWLSAR--NSCPLCRYELP 414 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LP-CgH~FH~~CI~~WL~~~--~tCPlCR~~l~ 414 (544)
.....|+||++.| ..++.+| |||.||..||..|+... ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEEC---SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhh---cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4468999999999 5678999 99999999999999643 58999999874
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=101.66 Aligned_cols=47 Identities=32% Similarity=0.696 Sum_probs=41.6
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC-CCCCCcccccC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN-SCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~ 415 (544)
...|+||++.| ..++.+||||.||..||..|+..+. .||+||..+..
T Consensus 52 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47899999999 5678899999999999999997544 89999999865
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.97 E-value=2.2e-10 Score=99.09 Aligned_cols=49 Identities=24% Similarity=0.805 Sum_probs=43.1
Q ss_pred CCCccccccccCCCCCceEEc-CCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 365 EDLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
....|+||++.| ..++.+ +|||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 458999999999 446666 9999999999999999889999999998765
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=2.2e-10 Score=100.70 Aligned_cols=53 Identities=26% Similarity=0.651 Sum_probs=45.1
Q ss_pred CCCccccccccCCC----CCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 365 EDLVCAICKDLLPS----GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 365 ~~~~C~ICle~~~~----g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
+...|+||++.|.. +..++.++|||.||..||.+||+.+.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 45899999999853 234488999999999999999999999999999986543
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.1e-10 Score=86.03 Aligned_cols=43 Identities=30% Similarity=0.835 Sum_probs=36.1
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhh---ccCCCCCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWL---SARNSCPLC 409 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL---~~~~tCPlC 409 (544)
.....|+||++.+. .++.++|+|.||..||..|+ ..+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34579999999994 45678999999999999995 456789998
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=4e-10 Score=97.17 Aligned_cols=49 Identities=29% Similarity=0.816 Sum_probs=41.3
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC---CCCCCcccccCCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN---SCPLCRYELPTDD 417 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~---tCPlCR~~l~~~~ 417 (544)
...|+||++.| ..++.++|||.||..||..|+..+. +||+||..+....
T Consensus 21 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 36899999999 4456789999999999999997654 8999999887643
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=4.7e-10 Score=97.90 Aligned_cols=47 Identities=30% Similarity=0.781 Sum_probs=41.6
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhcc-CCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA-RNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~ 415 (544)
+..|+||++.| ..++.++|||.||..||..|+.. +..||+||+.+..
T Consensus 15 ~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 47899999999 56788999999999999999976 6689999998864
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=5.6e-10 Score=87.90 Aligned_cols=52 Identities=21% Similarity=0.438 Sum_probs=41.1
Q ss_pred CCccccccc-cCCCCCc-eEEcCCCCeeccchhhhhhcc-CCCCCCCcccccCCC
Q 009095 366 DLVCAICKD-LLPSGTE-VIKLPCFHLYHQTCIFPWLSA-RNSCPLCRYELPTDD 417 (544)
Q Consensus 366 ~~~C~ICle-~~~~g~~-v~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~~ 417 (544)
+..|+||++ .|..... ++.++|||.||..||.+|+.. ...||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 478999999 7754332 356899999999999999754 467999999986543
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.89 E-value=5.7e-10 Score=103.37 Aligned_cols=47 Identities=34% Similarity=0.872 Sum_probs=40.5
Q ss_pred CCccccccccCCCCCceEEc-CCCCeeccchhhhhhcc-CCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSA-RNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~ 415 (544)
...|+||++.|. .++.+ +|||.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 479999999994 45555 99999999999999986 7789999999854
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=8.3e-10 Score=91.06 Aligned_cols=51 Identities=25% Similarity=0.552 Sum_probs=42.1
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhccC--CCCCCCcccccCCC
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR--NSCPLCRYELPTDD 417 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 417 (544)
....|+||++.+..+. +...|+|.||..||.+||+.+ .+||+||+.+....
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3478999999997654 223699999999999999877 78999999887543
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.88 E-value=7.5e-10 Score=102.11 Aligned_cols=48 Identities=29% Similarity=0.755 Sum_probs=42.4
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC-CCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN-SCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 416 (544)
...|+||++.| ..++.+||||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhh---cCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47899999999 5677899999999999999997654 799999998765
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=3.5e-10 Score=99.39 Aligned_cols=53 Identities=26% Similarity=0.654 Sum_probs=45.0
Q ss_pred CCCCccccccccCCC----CCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPS----GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~----g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
.....|+||++.|.. +..++.++|||.||..||.+||..+.+||+||+.+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 456899999998853 23447889999999999999999999999999998654
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.87 E-value=7.4e-10 Score=92.77 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=44.4
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
....|+||++.| ..++.++|||.|++.||..||..+.+||+|+..+...
T Consensus 13 ~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchh---cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 458999999999 7788999999999999999999889999999988653
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.87 E-value=1e-09 Score=94.83 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=45.7
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
.....|+||++.| ..++.+||||.||+.||..||..+.+||+|+.++...+
T Consensus 27 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 3468999999999 77889999999999999999998889999999987654
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.85 E-value=1.1e-09 Score=94.46 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=45.6
Q ss_pred CCCCccccccccCCCCCceEEcCCC-CeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCF-HLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCg-H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
.....|+||++.| ..+++++|| |.||+.||..||..+.+||+||..+...+
T Consensus 20 p~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 3458999999999 778899999 99999999999988889999999987654
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.84 E-value=9.3e-10 Score=96.80 Aligned_cols=50 Identities=26% Similarity=0.581 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC-CCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN-SCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 416 (544)
.....|+||++.+ ..++.++|||.||..||..|+.... +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 3457999999999 5567899999999999999997665 899999988653
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.1e-09 Score=84.50 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=40.2
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
.+...|+||++.| ..++.|||||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSC---BCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCcc---CCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3458899999999 45678999999999999885 568999999987643
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.80 E-value=1.6e-09 Score=94.66 Aligned_cols=48 Identities=31% Similarity=0.822 Sum_probs=42.2
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhcc-CCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA-RNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~ 416 (544)
...|+||++.+ ..++.++|||.||..||..|+.. ..+||+||..+...
T Consensus 23 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 47899999999 56778999999999999999976 67899999988654
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=1.9e-09 Score=94.70 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=41.0
Q ss_pred CCccccccccCCCCCceEEc-CCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 366 DLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
...|+||++.| ..++.+ +|||.||..||..|+. ..||+||..+...+
T Consensus 22 ~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 22 LLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp TTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred CCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 48999999999 556777 8999999999999998 78999999986543
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.71 E-value=2.6e-09 Score=97.58 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=42.5
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC-CCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN-SCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 416 (544)
.....|+||++.| ..++.++|||.||..||..|+.... +||+||.++...
T Consensus 29 ~~~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4458999999999 5567899999999999999997665 899999987543
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=5.5e-09 Score=102.52 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc-CCCCCCCcccccCC
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA-RNSCPLCRYELPTD 416 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~ 416 (544)
....|+||++.| ..++++||||.||+.||..||.. +.+||+||.++...
T Consensus 207 ~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 458999999999 77889999999999999999975 44599999988643
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.69 E-value=5.5e-09 Score=86.55 Aligned_cols=53 Identities=21% Similarity=0.486 Sum_probs=41.2
Q ss_pred CCCCccccccccCCCCCceEEc--CCCCeeccchhhhhhc-cCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKL--PCFHLYHQTCIFPWLS-ARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~L--PCgH~FH~~CI~~WL~-~~~tCPlCR~~l~~~~ 417 (544)
.++..|+||++.+...+ +..+ +|||.||..||..++. ....||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 44689999999885422 3344 4999999999999884 4568999999987654
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.69 E-value=7e-09 Score=109.33 Aligned_cols=47 Identities=32% Similarity=0.763 Sum_probs=42.2
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhc-cCCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS-ARNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~-~~~tCPlCR~~l~~ 415 (544)
...|+||++.+ ..++.+||||.||..||..|+. .+.+||+||..+..
T Consensus 332 ~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 47999999998 6678999999999999999998 68899999998864
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=6e-09 Score=88.58 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=40.6
Q ss_pred CCCccccccccCCCCCceEEcC-CCCeeccchhhhhhccC------CCCCC--Cccc-ccC
Q 009095 365 EDLVCAICKDLLPSGTEVIKLP-CFHLYHQTCIFPWLSAR------NSCPL--CRYE-LPT 415 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LP-CgH~FH~~CI~~WL~~~------~tCPl--CR~~-l~~ 415 (544)
....|+||++.| ..+++++ |||.||+.||..||..+ .+||+ |++. +..
T Consensus 6 ~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 458999999999 6788896 99999999999999653 48999 9876 544
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.66 E-value=7.2e-09 Score=82.28 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=40.0
Q ss_pred CCCccccccccCCCCCceEEc--CCCCe-eccchhhhhhccCCCCCCCccccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKL--PCFHL-YHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L--PCgH~-FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
++..|+||++.+ ..+..+ ||||. ||..|+..|+..+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 346899999987 444555 99999 899999999998889999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.64 E-value=1.1e-08 Score=83.15 Aligned_cols=43 Identities=28% Similarity=0.688 Sum_probs=38.3
Q ss_pred CCccccccccCCCCCceEEcCCCCe-eccchhhhhhccCCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHL-YHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
...|+||++.+ ..++.+||||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 46899999998 66788999999 999999999 789999998854
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.61 E-value=1.2e-08 Score=80.76 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=39.2
Q ss_pred CCccccccccCCCCCceEEc--CCCCe-eccchhhhhhccCCCCCCCccccc
Q 009095 366 DLVCAICKDLLPSGTEVIKL--PCFHL-YHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L--PCgH~-FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
...|+||++.. .....+ ||||. ||..|+..|.+....||+||+++.
T Consensus 7 ~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 46899999986 334455 99998 999999999988889999999884
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.52 E-value=3e-08 Score=92.12 Aligned_cols=50 Identities=26% Similarity=0.586 Sum_probs=42.6
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccC-CCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 416 (544)
.+...|+||++.| ..++.++|||.||..||.+|+... .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 3458999999999 556789999999999999999654 4899999988653
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.48 E-value=4.5e-08 Score=93.27 Aligned_cols=50 Identities=24% Similarity=0.201 Sum_probs=43.0
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccC-CCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR-NSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 416 (544)
.....|+||++.| ..++.+||||.||+.||..||..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm---~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccC---CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3458999999999 678899999999999999999764 4799999988654
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.43 E-value=5.3e-08 Score=100.98 Aligned_cols=53 Identities=28% Similarity=0.683 Sum_probs=40.8
Q ss_pred CCCCccccccccCCC-CCce---E-EcCCCCeeccchhhhhhccC-----------CCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPS-GTEV---I-KLPCFHLYHQTCIFPWLSAR-----------NSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~-g~~v---~-~LPCgH~FH~~CI~~WL~~~-----------~tCPlCR~~l~~~ 416 (544)
....+|+||++.+.. ++.+ . ..+|+|.||..||.+||+.. .+||+||+++...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 345799999999876 3322 1 23599999999999999642 4699999988654
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=6.8e-08 Score=78.50 Aligned_cols=44 Identities=27% Similarity=0.676 Sum_probs=37.0
Q ss_pred CCccccccccCCCCCceEEcCCCCe-eccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHL-YHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|+||++.+ ..++.+||||. ||..|+... ..||+||+.+...
T Consensus 25 ~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC---CCEEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 36899999998 56778999999 999999653 6899999988653
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.2e-07 Score=74.78 Aligned_cols=45 Identities=24% Similarity=0.627 Sum_probs=38.3
Q ss_pred CCCCccccccccCCCCCceEEcCCCCe-eccchhhhhhccCCCCCCCcccccC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHL-YHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
.....|.||++.. ..++.+||+|. ||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3457999999987 66889999999 99999984 4689999998865
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.32 E-value=2e-07 Score=77.04 Aligned_cols=44 Identities=25% Similarity=0.604 Sum_probs=38.0
Q ss_pred CCccccccccCCCCCceEEcCCCCe-eccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHL-YHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|+||++.+ ..++.+||||. ||..|+..|. .||+||..+...
T Consensus 18 ~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEE---INSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEE
T ss_pred CCEeEEeCccc---CcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCe
Confidence 36899999987 66889999999 9999999883 899999988653
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.26 E-value=3.9e-07 Score=94.79 Aligned_cols=44 Identities=34% Similarity=0.742 Sum_probs=39.0
Q ss_pred CCCccccccccCCCCCceEEcCCCCe-eccchhhhhhccCCCCCCCcccccC
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHL-YHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
++..|+||++.+ ..++.+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 457999999998 67888999999 999999998 679999998853
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=2.2e-07 Score=73.44 Aligned_cols=47 Identities=11% Similarity=0.288 Sum_probs=41.7
Q ss_pred CccccccccCCCCCceEEc-CCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 367 LVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
..|+||++.+ ..++.+ +|||.|.+.||.+||..+.+||+++.++...
T Consensus 4 ~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 6899999999 566777 8999999999999998888999999988654
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.21 E-value=4e-07 Score=71.88 Aligned_cols=49 Identities=31% Similarity=0.675 Sum_probs=37.8
Q ss_pred CCCCccccccccCCCCCceEEcCCC--C---eeccchhhhhhcc--CCCCCCCcccccC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCF--H---LYHQTCIFPWLSA--RNSCPLCRYELPT 415 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCg--H---~FH~~CI~~WL~~--~~tCPlCR~~l~~ 415 (544)
.+...|.||++.. +.. ..+||. | .||..||.+|+.. +.+||+|++.+..
T Consensus 4 ~~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3457899999974 233 368955 4 9999999999954 5789999998754
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.20 E-value=4e-07 Score=76.78 Aligned_cols=48 Identities=19% Similarity=0.468 Sum_probs=37.6
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc--------CCCCCC--Cccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA--------RNSCPL--CRYE 412 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~--------~~tCPl--CR~~ 412 (544)
....|+||++.+.....+...+|+|.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35789999999865444444579999999999999853 236999 9988
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.2e-07 Score=92.11 Aligned_cols=52 Identities=21% Similarity=0.447 Sum_probs=42.2
Q ss_pred CCCCccccccccCCCCCceEE-cCCCCeeccchhhhhhccC--CCCCC--CcccccCCCh
Q 009095 364 QEDLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWLSAR--NSCPL--CRYELPTDDK 418 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL~~~--~tCPl--CR~~l~~~~~ 418 (544)
.....|+||++.| ..++. +.|||.||+.||..|+..+ .+||+ |++.+...+.
T Consensus 179 ~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 3458999999999 55555 5899999999999999764 46999 9998866543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.64 E-value=2.2e-05 Score=68.08 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=38.2
Q ss_pred ccccccccCCCCCceEEcCCCCeeccchhhhhhc-cCCCCCCCcccccC
Q 009095 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS-ARNSCPLCRYELPT 415 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~-~~~tCPlCR~~l~~ 415 (544)
-|.+|--.+. ...+.+||+|+||..|+..|.+ ..++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888877773 4678899999999999999984 56789999998854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.52 E-value=2.7e-05 Score=77.06 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=39.9
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC--CCCCCcccccCCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN--SCPLCRYELPTDD 417 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~--tCPlCR~~l~~~~ 417 (544)
-..|.||.+.+..|. +.-.|+|.||..|+..|++.+. .||.|+..++...
T Consensus 180 i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 468999999997653 2223999999999999997654 8999999886553
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.40 E-value=0.02 Score=49.12 Aligned_cols=49 Identities=29% Similarity=0.529 Sum_probs=40.1
Q ss_pred CCCCccccccccCCCCCceEEcCC-CCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPC-FHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPC-gH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
-+-.-|..|+-.. +. .+.| .|.+|..|+...|.....||+|+++++.+-
T Consensus 26 ~G~~nCKsCWf~~---k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFEN---KG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCC---SS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhcccc---CC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 3457899999876 33 3345 599999999999999999999999998763
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.66 E-value=0.068 Score=44.89 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhh-hh
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFP-WL 400 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~-WL 400 (544)
+..|.||++.+.......-+.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 478999998753323333489999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.24 E-value=0.31 Score=38.88 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=32.9
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC----CCCCCcccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN----SCPLCRYEL 413 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l 413 (544)
....|.||.+. ++-+.--.|...||..|+.+.|.... .||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34679999853 34333334999999999998885433 699997654
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.18 E-value=0.46 Score=37.00 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=33.5
Q ss_pred CCCCccccccccCCCCCceEE-cCCCCeeccchhhhhhc-----cCCCCCCCccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWLS-----ARNSCPLCRYE 412 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~ 412 (544)
.+...|+||...+..+...+. -.|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345789999998854433333 34999999999864332 34469999753
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.76 E-value=0.87 Score=36.49 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=33.9
Q ss_pred CCCccccccccCCCCCceEEc-CCCCeeccchhhhhhcc----CCCCCCCcccccC
Q 009095 365 EDLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSA----RNSCPLCRYELPT 415 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~----~~tCPlCR~~l~~ 415 (544)
....|.||..... +...+.- .|...||..|+..-+.. .-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3467999988753 3223222 49999999999765532 3369999876643
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.87 E-value=1.4 Score=41.80 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=33.9
Q ss_pred CccccccccCCCCCc---eEEc-CCCCeeccchhhhh------hc-----cCCCCCCCccccc
Q 009095 367 LVCAICKDLLPSGTE---VIKL-PCFHLYHQTCIFPW------LS-----ARNSCPLCRYELP 414 (544)
Q Consensus 367 ~~C~ICle~~~~g~~---v~~L-PCgH~FH~~CI~~W------L~-----~~~tCPlCR~~l~ 414 (544)
..|+||...|..++. .+.- -|...||..|+.-- +. ..-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 579999999987652 3333 49999999998531 11 1458999987554
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.27 E-value=1.5 Score=32.47 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=29.4
Q ss_pred ccccccccCCCCCceEEcCCCCeeccchhhhhhccC----CCCCCCcc
Q 009095 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR----NSCPLCRY 411 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~ 411 (544)
.|.||...-..+.-+.--.|...||..|+.+=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764333333333499999999997655332 25999975
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.47 E-value=1.5 Score=34.08 Aligned_cols=46 Identities=28% Similarity=0.658 Sum_probs=31.5
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc----CCCCCCCccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA----RNSCPLCRYE 412 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~----~~tCPlCR~~ 412 (544)
..+..|.||... ++-+.--.|...||..|+..-|.. .=.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345789999873 333333348999999999986533 2269999753
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.17 E-value=1.2 Score=41.60 Aligned_cols=45 Identities=27% Similarity=0.559 Sum_probs=32.0
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccC----CCCCCCcccc
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR----NSCPLCRYEL 413 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~~l 413 (544)
+..|.||... |+-+..=.|...||..|+.+-|... =.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4679999854 3433333499999999998877542 2599998654
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.13 E-value=1.5 Score=34.06 Aligned_cols=47 Identities=30% Similarity=0.538 Sum_probs=31.8
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccC----CCCCCCcccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR----NSCPLCRYEL 413 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~~l 413 (544)
..+..|.||... ++-+.--.|...||..|+.+-|... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345789999863 3323233488999999999765432 2599997643
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=78.83 E-value=1.1 Score=52.06 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCCCccccccccCCCCCceEEcCCC-CeeccchhhhhhccCCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCF-HLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCg-H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
.+...|||-++.+ ..++++|.| +.|-+.+|.+||..+.+||+=|.++...
T Consensus 889 P~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3458899999999 778999997 6899999999999899999999988654
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=78.60 E-value=1.3 Score=37.37 Aligned_cols=31 Identities=23% Similarity=0.742 Sum_probs=22.4
Q ss_pred CCCccccccccCCCCCceEEcC---CCCeeccchhhhh
Q 009095 365 EDLVCAICKDLLPSGTEVIKLP---CFHLYHQTCIFPW 399 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LP---CgH~FH~~CI~~W 399 (544)
.+..|.||-.. ..+. .+| |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~~-t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccc---eeccccccccccHhhcccc
Confidence 45799999643 2222 444 8999999999985
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.11 E-value=1.3 Score=42.15 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=31.6
Q ss_pred CCCccccccccCCCCCceEEc-CCCCeeccchhhhhhccC----CCCCCCcccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSAR----NSCPLCRYEL 413 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~~----~tCPlCR~~l 413 (544)
.+..|.||... |+ +..- .|...||..|+.+-|... =.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45789999853 23 3222 389999999998877543 2699998644
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.79 E-value=0.96 Score=34.46 Aligned_cols=45 Identities=27% Similarity=0.669 Sum_probs=30.7
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC----CCCCCcc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN----SCPLCRY 411 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~ 411 (544)
..+..|.||... +.-+.--.|...||..|+.+-|.... .||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445789999874 33333334999999999997664322 4888853
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.77 E-value=2.7 Score=35.41 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=32.9
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCC----CCCCCcccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARN----SCPLCRYEL 413 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l 413 (544)
..+..|.||... ++-+..-.|.-.||..|+.+=|.... .||.|+..-
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 445789999974 33333334889999999988664422 599997643
No 88
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=74.44 E-value=1.2 Score=38.34 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=33.4
Q ss_pred CCccccccccCCCCCceEEc--CCCCeeccchhhhhh----------ccCCCCCCCccccc
Q 009095 366 DLVCAICKDLLPSGTEVIKL--PCFHLYHQTCIFPWL----------SARNSCPLCRYELP 414 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L--PCgH~FH~~CI~~WL----------~~~~tCPlCR~~l~ 414 (544)
...|.||...|......+.- .|...||..|+.--- ...-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 36799999998654444443 489999999985221 02346999986543
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=72.81 E-value=0.8 Score=35.34 Aligned_cols=46 Identities=26% Similarity=0.675 Sum_probs=31.7
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhccC----CCCCCCcccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR----NSCPLCRYEL 413 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~~l 413 (544)
.+..|.||... +.-+.--.|...||..|+.+=|... =.||.|....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 35789999874 3333333499999999999765432 2599997654
No 90
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.11 E-value=3.3 Score=35.17 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=30.1
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhcc---CCCCCCCccc
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA---RNSCPLCRYE 412 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~---~~tCPlCR~~ 412 (544)
..| ||......+.-+..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 456 89877654443333359999999999764322 2369999743
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.81 E-value=4 Score=34.91 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=30.7
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhcc----CCCCCCCc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA----RNSCPLCR 410 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~----~~tCPlCR 410 (544)
.++..|.||.+.-...+-+.--.|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 345789999886422222333459999999999887642 22466664
No 92
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.89 E-value=4.8 Score=34.07 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=27.5
Q ss_pred CCCccccccccCCCCCceEEcC--CC-Ceeccchhhhhh--ccCCCCCCCcccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKLP--CF-HLYHQTCIFPWL--SARNSCPLCRYEL 413 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LP--Cg-H~FH~~CI~~WL--~~~~tCPlCR~~l 413 (544)
....| ||..... +.-+..=. |. ..||..|+.--- ..+-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 34566 9988653 33222223 55 689999997211 1233699997654
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=67.08 E-value=2.3 Score=33.47 Aligned_cols=46 Identities=26% Similarity=0.539 Sum_probs=31.4
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhccC----CCCCCCccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR----NSCPLCRYE 412 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~~ 412 (544)
..+..|.||... ++-+.--.|...||..|+.+-|... =.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 345789999864 3333333499999999999765432 259999653
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.48 E-value=5 Score=34.59 Aligned_cols=44 Identities=25% Similarity=0.528 Sum_probs=28.5
Q ss_pred ccccccccCCCCCceEE-cCCCCeeccchhhhhhccC----CCCCCCcc
Q 009095 368 VCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWLSAR----NSCPLCRY 411 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL~~~----~tCPlCR~ 411 (544)
.|.||...-.....+.. -.|...||..|+.+-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 67778764222222322 3499999999998766432 26999975
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=65.73 E-value=5.8 Score=29.64 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=29.3
Q ss_pred CccccccccCCCCCceEE-c-CCCCeeccchhhhhh----ccCCCCCCCc
Q 009095 367 LVCAICKDLLPSGTEVIK-L-PCFHLYHQTCIFPWL----SARNSCPLCR 410 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~-L-PCgH~FH~~CI~~WL----~~~~tCPlCR 410 (544)
-.|.||...+..+...+. - .|...||..|+.--. ..+-.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 358899998865443333 2 488899999986322 2455799885
No 96
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=62.58 E-value=3.9 Score=38.58 Aligned_cols=43 Identities=30% Similarity=0.686 Sum_probs=30.4
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhcc----CCCCCCCccc
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA----RNSCPLCRYE 412 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~----~~tCPlCR~~ 412 (544)
..|.||... |+-+..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 579999854 343334458899999999875543 2259999765
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.49 E-value=9 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=30.5
Q ss_pred CCccccccccCCCCCceEE-cCCCCeeccchhhhhhc-----cCCCCCCCcccc
Q 009095 366 DLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWLS-----ARNSCPLCRYEL 413 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~l 413 (544)
...| ||...+..+...+. -.|...||..|+.--.. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3556 99988753333333 34999999999853221 344799998654
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.19 E-value=4 Score=31.70 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=33.3
Q ss_pred CCCCccccccccCCCC-CceEE-cCCCCeeccchhhhhhcc-------CCCCCCCccccc
Q 009095 364 QEDLVCAICKDLLPSG-TEVIK-LPCFHLYHQTCIFPWLSA-------RNSCPLCRYELP 414 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g-~~v~~-LPCgH~FH~~CI~~WL~~-------~~tCPlCR~~l~ 414 (544)
..+..|.||....... ..+.. -.|.-.||..|+.+-|.. .=.||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3457899999865321 22222 249999999999875532 225999976543
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.68 E-value=1.8 Score=36.48 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhccC----CCCCCCccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR----NSCPLCRYE 412 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~~ 412 (544)
+...|.||...-..+.-+..=.|...||..|+.+=|... =.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 346899998764221222222499999999998655332 259999754
No 100
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=61.27 E-value=8.2 Score=30.92 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=27.2
Q ss_pred CCCccccccccCCCCCceEEcC--CC-Ceeccchhhhhhcc----CCCCCCCcccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKLP--CF-HLYHQTCIFPWLSA----RNSCPLCRYEL 413 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~~l 413 (544)
+...| ||..... +.-+.-=. |. ..||..|+. |.. +-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8988642 33111112 55 689999997 322 23699997644
No 101
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.27 E-value=5 Score=32.73 Aligned_cols=45 Identities=24% Similarity=0.533 Sum_probs=28.5
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhcc-----CCCCCCCcc
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA-----RNSCPLCRY 411 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~-----~~tCPlCR~ 411 (544)
-.|.||...-..+.-+.--.|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888764322232222249999999999965532 225999964
No 102
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.08 E-value=3.5 Score=33.08 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=30.5
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhh---------ccCCCCCCCcccc
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWL---------SARNSCPLCRYEL 413 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL---------~~~~tCPlCR~~l 413 (544)
...| ||...+..+.-+..-.|...||..|+.--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3566 899887533323333499999999985322 2355799997643
No 103
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.57 E-value=5.2 Score=41.91 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=32.8
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhc---cC--CCCCCCcccccCCCh
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS---AR--NSCPLCRYELPTDDK 418 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~---~~--~tCPlCR~~l~~~~~ 418 (544)
+.|||-+..+. ..++-..|.|.-|.+- ..||. +. -.||+|.+.+...+.
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 78999888773 4566677999855542 33442 22 359999988866553
No 104
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=56.88 E-value=4.9 Score=32.86 Aligned_cols=26 Identities=38% Similarity=0.700 Sum_probs=19.3
Q ss_pred CCCCeeccchhhhhhccC-----CCCCCCcc
Q 009095 386 PCFHLYHQTCIFPWLSAR-----NSCPLCRY 411 (544)
Q Consensus 386 PCgH~FH~~CI~~WL~~~-----~tCPlCR~ 411 (544)
.|...||..|+.+-|... =.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 388999999999766431 26999975
No 105
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=56.22 E-value=5.2 Score=31.92 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=26.1
Q ss_pred ccccccccCCCCCceEEc-CCCCeeccchhhhhhcc-----CCCCCCCcc
Q 009095 368 VCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLSA-----RNSCPLCRY 411 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~~-----~~tCPlCR~ 411 (544)
.|.||...-.. ..+..- .|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 44566643211 222222 38899999999965532 226999975
No 106
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.99 E-value=5 Score=31.90 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=29.9
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhh---ccCCCCCCCcc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWL---SARNSCPLCRY 411 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL---~~~~tCPlCR~ 411 (544)
.+...| ||...+..+.-+.--.|...||..|+.--. ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445678 998876422223333499999999986432 23346888864
No 107
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=55.85 E-value=6.2 Score=41.18 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=32.6
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhh---ccC--CCCCCCcccccCCCh
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWL---SAR--NSCPLCRYELPTDDK 418 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL---~~~--~tCPlCR~~l~~~~~ 418 (544)
+.|+|-+..+. ..++-..|.|.-|.+ +..|| ... -.||+|.+.+...+.
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeCCCccceec--cCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 68999888773 455667799985443 23344 222 259999998876653
No 108
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.08 E-value=5 Score=31.89 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCCccccccccCCCCCceEE-cCCCCeeccchhhhhh----ccCCCCCCCcccc
Q 009095 365 EDLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWL----SARNSCPLCRYEL 413 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL----~~~~tCPlCR~~l 413 (544)
....| ||...+..+...+. -.|...||..|+.--. ...-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34678 79887655543333 3499999999986432 2344699997543
No 109
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.95 E-value=4 Score=33.98 Aligned_cols=49 Identities=24% Similarity=0.708 Sum_probs=33.1
Q ss_pred CCccccccccCCCC-CceEEc-CCCCeeccchhhhhhcc--------CCCCCCCccccc
Q 009095 366 DLVCAICKDLLPSG-TEVIKL-PCFHLYHQTCIFPWLSA--------RNSCPLCRYELP 414 (544)
Q Consensus 366 ~~~C~ICle~~~~g-~~v~~L-PCgH~FH~~CI~~WL~~--------~~tCPlCR~~l~ 414 (544)
+..|.||...-... ..+..- .|...||..|+.+=|.. .=.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46899999864321 223332 39999999999986642 226999976554
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=53.65 E-value=7.1 Score=32.68 Aligned_cols=38 Identities=26% Similarity=0.495 Sum_probs=29.9
Q ss_pred CCCCccccccccCCCCCceEEcC--CCCeeccchhhhhhcc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLP--CFHLYHQTCIFPWLSA 402 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LP--CgH~FH~~CI~~WL~~ 402 (544)
...+.|.+|.+.++. ...++.| =.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHHh
Confidence 345899999999865 4556666 5799999999988853
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.71 E-value=6.8 Score=31.69 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=31.0
Q ss_pred CCCccccccccCCCCCceEEc--CCCCeeccchhhhhh---------ccCCCCCCCcccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKL--PCFHLYHQTCIFPWL---------SARNSCPLCRYEL 413 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L--PCgH~FH~~CI~~WL---------~~~~tCPlCR~~l 413 (544)
....| ||......+.-+..= .|...||..|+.--- ..+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34667 898875444333333 599999999985321 1345799997644
No 112
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.77 E-value=12 Score=29.58 Aligned_cols=33 Identities=21% Similarity=0.540 Sum_probs=24.2
Q ss_pred CCCccccccccCCCCCceEEc--CCCCeeccchhh
Q 009095 365 EDLVCAICKDLLPSGTEVIKL--PCFHLYHQTCIF 397 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L--PCgH~FH~~CI~ 397 (544)
....|++|...+..+...+.- .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 346899999998765544433 599999999984
No 113
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=48.07 E-value=4.6 Score=37.04 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=31.0
Q ss_pred CCCccccccccCCCCCceEEc-CCCCeeccchhhhhh-----ccCCCCCCCccc
Q 009095 365 EDLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWL-----SARNSCPLCRYE 412 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL-----~~~~tCPlCR~~ 412 (544)
....| ||...+..+...+.- .|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34678 999887533333333 499999999995322 224469999753
No 114
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=47.39 E-value=5.1 Score=31.60 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=32.8
Q ss_pred CCCCccccccc-cCCCCCceEEcCCCCeeccchhhhhhccC-C---CCCCCcc
Q 009095 364 QEDLVCAICKD-LLPSGTEVIKLPCFHLYHQTCIFPWLSAR-N---SCPLCRY 411 (544)
Q Consensus 364 ~~~~~C~ICle-~~~~g~~v~~LPCgH~FH~~CI~~WL~~~-~---tCPlCR~ 411 (544)
.+...|.||+. .|..|-.-...-|.-.||..|--.|-... + .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 44579999997 55555444455588889999988875333 3 3777765
No 115
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.00 E-value=24 Score=33.96 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCccccccccCCCCCceEEc-CCCCeeccchhhhhhc--------cCCCCCCCcccc
Q 009095 366 DLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWLS--------ARNSCPLCRYEL 413 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL~--------~~~tCPlCR~~l 413 (544)
...|.+|...|..-..-... .||++||..|...... ....|-.|...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 36899999988643322233 4999999999876542 122466665444
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.83 E-value=8.8 Score=37.58 Aligned_cols=45 Identities=27% Similarity=0.555 Sum_probs=25.8
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhcc-----CCCCCCCcc
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA-----RNSCPLCRY 411 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~-----~~tCPlCR~ 411 (544)
..|.||...-..+.-+..=.|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888764322232323349999999999965532 125999965
No 117
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.58 E-value=17 Score=28.28 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=31.2
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|..|.+.+..++.+.. -+..||..|. .|..|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a--~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS--LGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE--TTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEE--CCeEeeCCCC--------CCCCCCCccCCC
Confidence 3689999999876665443 5788998885 589998888643
No 118
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=43.37 E-value=5.9 Score=33.46 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=25.6
Q ss_pred CCCCccccccccCCCCCceEEcCCC---Ceeccchhhhhh--ccCCCCCC-Ccc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCF---HLYHQTCIFPWL--SARNSCPL-CRY 411 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCg---H~FH~~CI~~WL--~~~~tCPl-CR~ 411 (544)
.....| ||..... +.-+..=.|. ..||..|+.--- ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344567 9987532 3311111244 689999995211 12336999 974
No 119
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.13 E-value=9.9 Score=34.19 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=26.9
Q ss_pred CCcceecccccccc-CCCCccccccccccccccceeEeecCC
Q 009095 11 SQLASCTLCRRTLV-PDNESVDDHENMHLCGDCKFLFLEDVG 51 (544)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (544)
.....|.+|.++|. +++- ..+|.+||..|-..=+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~-------g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSA-------SVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCC-------EEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCC-------CCCCCCCCcccccccC
Confidence 45678999999994 4443 4899999999987655
No 120
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.62 E-value=12 Score=29.16 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=21.6
Q ss_pred ccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
.|..|.+.+..++.+..+ +..||..|. .|-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEEC--CccccCCCC--------CccccCccCCC
Confidence 466666666544433333 666776663 46666666644
No 121
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.56 E-value=9.8 Score=32.42 Aligned_cols=46 Identities=26% Similarity=0.522 Sum_probs=27.9
Q ss_pred ccccccccCCCCCceEEcCCCCeeccchhhhhhcc----CCCCCCCcccc
Q 009095 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSA----RNSCPLCRYEL 413 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~----~~tCPlCR~~l 413 (544)
.|.||...-.....+.--.|...||..|+.+=|.. .-.||.|+...
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 46667655322222222249999999999876543 22588886543
No 122
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.27 E-value=5.5 Score=35.34 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=32.1
Q ss_pred CccccccccCCCCCceE-EcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 367 LVCAICKDLLPSGTEVI-KLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~-~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
..|.+|...|..-..-. .-.||.+||..|..........|-.|...+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~~ 68 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRA 68 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHHh
Confidence 58999999986432222 2349999999998887666677888865443
No 123
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=41.74 E-value=26 Score=31.88 Aligned_cols=45 Identities=22% Similarity=0.458 Sum_probs=31.2
Q ss_pred CCCCccccccccCCCCCceEEcCCCCeeccchhhhhhc-----------cCCCCCCCcc
Q 009095 364 QEDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLS-----------ARNSCPLCRY 411 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~-----------~~~tCPlCR~ 411 (544)
..+..|.||.+. |+-+..=.|-..||..||.+-|. ..=.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 445789999975 23222234999999999997663 1225999974
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.83 E-value=5 Score=34.74 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=29.5
Q ss_pred ccccccccCCCCCceEEcCCCCeeccchhhhhhccC----CCCCCCcccc
Q 009095 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSAR----NSCPLCRYEL 413 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~~l 413 (544)
.|.||...-..+.-+.--.|...||..|+.+=|... =.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 577887654333333333499999999999755432 2599886544
No 125
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=40.50 E-value=11 Score=31.25 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCCCccccccccCC-CCCceEEc-CCCCeeccchhhhhhc--cCCCCCCCcccccCC
Q 009095 364 QEDLVCAICKDLLP-SGTEVIKL-PCFHLYHQTCIFPWLS--ARNSCPLCRYELPTD 416 (544)
Q Consensus 364 ~~~~~C~ICle~~~-~g~~v~~L-PCgH~FH~~CI~~WL~--~~~tCPlCR~~l~~~ 416 (544)
..+..|.||...-. ....++.- .|.-.||..|+..-+. ..=.||.|.......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 34578999997531 11223332 3889999999986432 223599997655443
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=40.36 E-value=27 Score=29.96 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCccccccccCC------CCCceEEcCCCCeeccchhhh
Q 009095 366 DLVCAICKDLLP------SGTEVIKLPCFHLYHQTCIFP 398 (544)
Q Consensus 366 ~~~C~ICle~~~------~g~~v~~LPCgH~FH~~CI~~ 398 (544)
...|.+|+..-. .++-+.--.|+..||..||..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 368999987531 112233334999999999963
No 127
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.55 E-value=22 Score=28.32 Aligned_cols=39 Identities=26% Similarity=0.594 Sum_probs=30.2
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
...|..|-..+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 4689999998876665554 4788998885 5889988875
No 128
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.09 E-value=10 Score=30.35 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=31.0
Q ss_pred CCCCccccccccC-CCCCceEEc-CCCCeeccchhhhhhc--cCCCCCCCccc
Q 009095 364 QEDLVCAICKDLL-PSGTEVIKL-PCFHLYHQTCIFPWLS--ARNSCPLCRYE 412 (544)
Q Consensus 364 ~~~~~C~ICle~~-~~g~~v~~L-PCgH~FH~~CI~~WL~--~~~tCPlCR~~ 412 (544)
.....|.||...- .....++.- .|.-.||..|+..-+. ..=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3457899998763 222233332 4999999999975431 22258888653
No 129
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.40 E-value=12 Score=29.21 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=28.9
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCC
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLC 409 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlC 409 (544)
..|--|...|......+--.|++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999988532212223399999999954433555679988
No 130
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.29 E-value=13 Score=30.66 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=27.9
Q ss_pred CCCcceeccccccccCCCCccccccccccccccceeEeecCC
Q 009095 10 SSQLASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFLEDVG 51 (544)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (544)
....-.|..|+++|.+= |-..++|.+||..|-.+=+
T Consensus 22 ~~~~r~CarC~~~LG~l------~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRL------SPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSS------CTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCcccccc------ccCCCcCcccChhhccccc
Confidence 35567899999999864 3357899999998876654
No 131
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.21 E-value=17 Score=29.22 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=23.9
Q ss_pred CCCccccccccCCCCCceEEcCC-CCeeccchhhh
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPC-FHLYHQTCIFP 398 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPC-gH~FH~~CI~~ 398 (544)
+..-|.||.+. ..++.+.| +-+||..|-..
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 34679999998 45888889 88999998554
No 132
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.15 E-value=26 Score=27.88 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=31.1
Q ss_pred CCCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCCC
Q 009095 365 EDLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTDD 417 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 417 (544)
....|..|...+...+.+. .-+..||..|. .|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 3468999999886555443 35788999884 5888888776543
No 133
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.85 E-value=19 Score=29.95 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=25.6
Q ss_pred CCccccccccCCCCCceEE-cCCCCeeccchhhhhh
Q 009095 366 DLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWL 400 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL 400 (544)
...|.+|...|..-..-.. -.||++||..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3689999999864332222 3499999999988764
No 134
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.07 E-value=23 Score=31.19 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCccccccccCCCCCceEEc-CCCCeeccchhhhhh
Q 009095 366 DLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWL 400 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL 400 (544)
...|.+|...|..-..-..- .||++||..|.....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 35899999999643322222 499999999987653
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.71 E-value=22 Score=33.90 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCccccccccCCCCCceEEc-CCCCeeccchhhhhh
Q 009095 366 DLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPWL 400 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~WL 400 (544)
...|.+|...|..-..-..- .||++||..|.....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 46999999998643322233 399999999987643
No 136
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=34.93 E-value=8.2 Score=35.52 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCCccccccccCC--CCCceEEcCCCCeeccchhhhhhccCC--CCCCCccc
Q 009095 365 EDLVCAICKDLLP--SGTEVIKLPCFHLYHQTCIFPWLSARN--SCPLCRYE 412 (544)
Q Consensus 365 ~~~~C~ICle~~~--~g~~v~~LPCgH~FH~~CI~~WL~~~~--tCPlCR~~ 412 (544)
.+..|.+|...|. .+......-|+|.+|..|- .|+.... .|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 4579999999763 3445555569999999998 3554333 38888654
No 137
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=34.68 E-value=16 Score=33.52 Aligned_cols=34 Identities=12% Similarity=0.325 Sum_probs=27.8
Q ss_pred CcceeccccccccCCCCccccccccccccccceeEeecCC
Q 009095 12 QLASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFLEDVG 51 (544)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (544)
....|.+|.++|.+-.. ...+|.+||..|-..=+
T Consensus 67 ~~~~C~~C~~~fg~l~~------~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLN------SRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSS------CCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccC------CCCcCCCCCchhhcccc
Confidence 57889999999987644 37899999999987655
No 138
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.36 E-value=9.7 Score=29.38 Aligned_cols=41 Identities=24% Similarity=0.592 Sum_probs=24.2
Q ss_pred CccccccccCCCCCceEEcC--CC-Ceeccchhhhhhcc----CCCCCCCcc
Q 009095 367 LVCAICKDLLPSGTEVIKLP--CF-HLYHQTCIFPWLSA----RNSCPLCRY 411 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~ 411 (544)
..| ||..... +.-+.-=. |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 456 9988642 32111113 54 689999997 432 235988864
No 139
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=34.26 E-value=30 Score=29.94 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=28.7
Q ss_pred CCCCccccccccCCCCCceEEc---CCCCeeccchhhhhhccC----CCCCCCcccccC
Q 009095 364 QEDLVCAICKDLLPSGTEVIKL---PCFHLYHQTCIFPWLSAR----NSCPLCRYELPT 415 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~L---PCgH~FH~~CI~~WL~~~----~tCPlCR~~l~~ 415 (544)
..+..|.||.+. | .++.- .|-..||..|+. |... =.||.|+-.+..
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 445789999842 3 33332 387999999997 4332 247766554443
No 140
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.15 E-value=22 Score=31.89 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCCccccccccCC-C-CCceEEcCCCCeeccchhhhhhcc-CC---CCCCCccc
Q 009095 365 EDLVCAICKDLLP-S-GTEVIKLPCFHLYHQTCIFPWLSA-RN---SCPLCRYE 412 (544)
Q Consensus 365 ~~~~C~ICle~~~-~-g~~v~~LPCgH~FH~~CI~~WL~~-~~---tCPlCR~~ 412 (544)
....|.+|...|. . +......-|.|.+|..|-..-... +. .|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4579999999883 2 334445559999999997643221 11 38888653
No 141
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=34.11 E-value=10 Score=29.26 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=25.2
Q ss_pred CCccccccccCCCCCceEEcC--CC-Ceeccchhhhhhcc----CCCCCCCcc
Q 009095 366 DLVCAICKDLLPSGTEVIKLP--CF-HLYHQTCIFPWLSA----RNSCPLCRY 411 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~ 411 (544)
..-| ||..... |.-+.-=. |. ..||..|+. |.. +-.||.|++
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3556 9988642 32111123 55 699999997 322 236998864
No 142
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.74 E-value=33 Score=27.92 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCCccccccccCCCCCceEEc-CCCCeeccchhhhh
Q 009095 365 EDLVCAICKDLLPSGTEVIKL-PCFHLYHQTCIFPW 399 (544)
Q Consensus 365 ~~~~C~ICle~~~~g~~v~~L-PCgH~FH~~CI~~W 399 (544)
....|.+|...|..-..-..- .||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 346899999999653322222 49999999998765
No 143
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=32.62 E-value=17 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=24.7
Q ss_pred ceeccccccccCCCCcccccccccccccccee
Q 009095 14 ASCTLCRRTLVPDNESVDDHENMHLCGDCKFL 45 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (544)
..|..|+++| .|...-+.| .+.+|..||..
T Consensus 6 ~~C~eC~~~~-~d~~l~~~F-~~~VC~~Cr~~ 35 (111)
T 1d4u_A 6 VICEECGKEF-MDSYLMDHF-DLPTCDDCRDA 35 (111)
T ss_dssp EECTTTCCEE-SCSSSTTTT-SCCCCTTTCSS
T ss_pred CccccCCChh-hHHHHHHhC-Ceeechhhccc
Confidence 4699999998 688777777 58999999854
No 144
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=32.22 E-value=13 Score=29.23 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=26.4
Q ss_pred CccccccccCCCCCceEEc---CCCCeeccchhhhhh---c-----cCCCCCCCcc
Q 009095 367 LVCAICKDLLPSGTEVIKL---PCFHLYHQTCIFPWL---S-----ARNSCPLCRY 411 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~L---PCgH~FH~~CI~~WL---~-----~~~tCPlCR~ 411 (544)
..| ||......+. .+.- .|...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 8977654443 2333 288899999983211 1 1346999974
No 145
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.73 E-value=42 Score=25.47 Aligned_cols=41 Identities=27% Similarity=0.523 Sum_probs=29.3
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
..|..|...+...+.++. .-+..||..|. .|-.|++.|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCCC
Confidence 589999998876433322 25788998885 688998887654
No 146
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.52 E-value=36 Score=28.17 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCccccccccCCCCCceEE-cCCCCeeccchhhhhh
Q 009095 366 DLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWL 400 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL 400 (544)
...|.+|...|..-..--. -.||++||..|....+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 4689999999864332222 2499999999987643
No 147
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=31.45 E-value=26 Score=27.52 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=30.2
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|..|.+.+..++.+.. -+..||..|. .|-.|++.|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC--DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE--TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe--CCcccccccC--------ccCCCCCCCCCC
Confidence 3689999998876664433 5789999885 488898888654
No 148
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.06 E-value=33 Score=27.83 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCccccccccCCCCCceEE-cCCCCeeccchhhhhh
Q 009095 366 DLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWL 400 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL 400 (544)
...|.+|...|..-..--. -.||.+||..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 4689999999964332222 2499999999987653
No 149
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.25 E-value=50 Score=29.52 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=29.4
Q ss_pred CCCCccccccccCCCCCceEE-cCCCCeeccchhhhhh------c-----cCCCCCCCcc
Q 009095 364 QEDLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPWL------S-----ARNSCPLCRY 411 (544)
Q Consensus 364 ~~~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~WL------~-----~~~tCPlCR~ 411 (544)
..+..|.||.+. ..+.. =.|-..||..||.+-+ + ..=.|++|+-
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 445679999875 22222 2388999999999753 1 1126999954
No 150
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.00 E-value=21 Score=28.66 Aligned_cols=34 Identities=12% Similarity=0.361 Sum_probs=25.2
Q ss_pred cceeccccccccCCCCccccccccccccccceeEeecCC
Q 009095 13 LASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFLEDVG 51 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (544)
..+|.+|..+|..+.+ +..-+|..|+..+==..|
T Consensus 8 iL~CP~ck~~L~~~~~-----~~~LiC~~cg~~YPI~dG 41 (69)
T 2pk7_A 8 ILACPICKGPLKLSAD-----KTELISKGAGLAYPIRDG 41 (69)
T ss_dssp TCCCTTTCCCCEECTT-----SSEEEETTTTEEEEEETT
T ss_pred heeCCCCCCcCeEeCC-----CCEEEcCCCCcEecCcCC
Confidence 4689999999998765 455689999976543333
No 151
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.96 E-value=39 Score=27.43 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=23.8
Q ss_pred CCccccccccCCCCCceEE-cCCCCeeccchhhhh
Q 009095 366 DLVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPW 399 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~W 399 (544)
...|.+|...|..-..--. -.||.+||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 4689999999854322222 249999999997654
No 152
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.91 E-value=39 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=29.6
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
..|..|...+..+..+ +..-+..||..|. +|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCCC
Confidence 5899999988654322 3336889999885 588998887653
No 153
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.85 E-value=11 Score=38.90 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCccccccccCCCCCc-eEEcCCCCeeccchhhhhhc-------cCCCCCCCcccc
Q 009095 366 DLVCAICKDLLPSGTE-VIKLPCFHLYHQTCIFPWLS-------ARNSCPLCRYEL 413 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~-v~~LPCgH~FH~~CI~~WL~-------~~~tCPlCR~~l 413 (544)
...|.+|...|..-.. ...-.||++||..|...++. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3689999998854321 22334999999999976541 123577775544
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.65 E-value=50 Score=25.77 Aligned_cols=41 Identities=20% Similarity=0.504 Sum_probs=30.3
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
..|..|...+..++.++. .-+..||..|. +|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE-YKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE-CSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEE-ECccccccccC--------chhhCCCccCCC
Confidence 589999998876554332 35788998885 688998888654
No 155
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.63 E-value=36 Score=27.00 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=23.3
Q ss_pred CccccccccCCCCCceEE-cCCCCeeccchhhhh
Q 009095 367 LVCAICKDLLPSGTEVIK-LPCFHLYHQTCIFPW 399 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~-LPCgH~FH~~CI~~W 399 (544)
..|.+|...|..-..--. -.||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 489999999854322222 249999999997654
No 156
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.96 E-value=34 Score=29.01 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=34.6
Q ss_pred CCccccccccCCC---CCc-eEEcCCCCeeccchhhhhh-ccCCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPS---GTE-VIKLPCFHLYHQTCIFPWL-SARNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~---g~~-v~~LPCgH~FH~~CI~~WL-~~~~tCPlCR~~l~~ 415 (544)
...|.||-+.+-. |+. +...-|+--.|+.|..-=. ..+..||-|+..+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4699999998643 221 1222388888999986433 567789999988753
No 157
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=28.24 E-value=15 Score=39.65 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=29.3
Q ss_pred ccccccccCCCCCceE-EcCCCCeeccchhhhhhc-----cCCCCCCCcccc
Q 009095 368 VCAICKDLLPSGTEVI-KLPCFHLYHQTCIFPWLS-----ARNSCPLCRYEL 413 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~-~LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~l 413 (544)
..+||...+..+...+ .-.|.-.||..|+.---. ..-.||.|+...
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 4449998875333333 334999999999853221 234799998643
No 158
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.08 E-value=42 Score=26.28 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
...|..|.+.+.. . .+..-+..||..|. +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999998864 3 23346889999885 6889988774
No 159
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.90 E-value=27 Score=27.03 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=24.2
Q ss_pred CccccccccCCCCC--ceEEcC---CCCeeccchhhhhhcc
Q 009095 367 LVCAICKDLLPSGT--EVIKLP---CFHLYHQTCIFPWLSA 402 (544)
Q Consensus 367 ~~C~ICle~~~~g~--~v~~LP---CgH~FH~~CI~~WL~~ 402 (544)
..||-|.-.++... .-++-. |++.||..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 57888887775433 222222 8889999999888643
No 160
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.73 E-value=48 Score=25.47 Aligned_cols=42 Identities=24% Similarity=0.639 Sum_probs=29.9
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|..|...+...+.++.. -+..||..|. .|-.|++.|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS-NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE-TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEe-CccEeccccC--------eECCCCCCCCCC
Confidence 46899999988754444322 4778998884 588898877543
No 161
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.51 E-value=63 Score=24.57 Aligned_cols=41 Identities=27% Similarity=0.526 Sum_probs=29.3
Q ss_pred CCccccccccCCC--CCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPS--GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~--g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
...|..|-+.+.. ...++ ..-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-ECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceE-EECCcccCcccC--------EeccCCCcCCC
Confidence 3689999998864 22333 336889999885 68899888753
No 162
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.40 E-value=34 Score=27.50 Aligned_cols=39 Identities=18% Similarity=0.515 Sum_probs=29.2
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
...|..|-..+. ++.+. .-+..||..|. .|-.|++.|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE--ECCccccccCC--------ccCCCCCCCCC
Confidence 468999999884 34333 35889999885 68999888864
No 163
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.22 E-value=39 Score=29.29 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=28.9
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
...|..|-..+.....+.. -+..||..|. .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA--MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE--TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe--CCcEEccccc--------CcCcCCCccc
Confidence 3689999998864332333 5888999884 6999988885
No 164
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.99 E-value=55 Score=24.85 Aligned_cols=40 Identities=20% Similarity=0.451 Sum_probs=28.0
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
...|..|...+...+.. +..-+..||..|. .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcCC
Confidence 35799999877643322 2235788998885 5889988884
No 165
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.84 E-value=60 Score=24.53 Aligned_cols=40 Identities=23% Similarity=0.544 Sum_probs=28.8
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|..|-+.+. +..+.. -+..||..|. .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKA--MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEE--TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ceEEEE--CcccccccCC--------EeCCCCCcCCCC
Confidence 368999999886 333333 5788998885 588998887654
No 166
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=58 Score=25.44 Aligned_cols=39 Identities=28% Similarity=0.717 Sum_probs=28.5
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
..|..|...+. +..+.. -+..||..|. +|-.|++.|...
T Consensus 16 ~~C~~C~~~I~-~~~v~a--~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA--LGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE--TTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEEE--CCceeCccCC--------ccccCCCCCCCC
Confidence 58999999886 343333 5788998885 588998888643
No 167
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=25.78 E-value=52 Score=24.65 Aligned_cols=42 Identities=24% Similarity=0.659 Sum_probs=30.5
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|..|...+...+.++. .=+..||..|. .|-.|.+.|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4689999999876554433 35778998886 688898887543
No 168
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.58 E-value=19 Score=31.09 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=26.9
Q ss_pred ccccCCCCcceeccccccccCCCCcc------ccccccccccccce
Q 009095 5 LVVDHSSQLASCTLCRRTLVPDNESV------DDHENMHLCGDCKF 44 (544)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 44 (544)
||.-.+.-.+.|..|+.++..+.+.. .+|...+.|.||.-
T Consensus 24 ~~~~~~~M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q 69 (101)
T 2jne_A 24 LVPRGSHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQ 69 (101)
T ss_dssp -------CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCS
T ss_pred cccCcccccccCccCCCcceecCCEEECccccchhhccccCcchhh
Confidence 44444435589999999999887654 57888899999964
No 169
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.52 E-value=23 Score=28.24 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=25.1
Q ss_pred cceeccccccccCCCCccccccccccccccceeEeecCC
Q 009095 13 LASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFLEDVG 51 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (544)
..+|.+|..+|..+.+ +..-+|..|+..+-=..|
T Consensus 8 iL~CP~ck~~L~~~~~-----~~~LiC~~cg~~YPI~dG 41 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKS-----KDELICKGDRLAFPIKDG 41 (68)
T ss_dssp ECBCTTTCCBCEEETT-----TTEEEETTTTEEEEEETT
T ss_pred heECCCCCCcCeEeCC-----CCEEEcCCCCcEecCCCC
Confidence 4689999999998764 455689999876643333
No 170
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.52 E-value=15 Score=31.74 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=27.2
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
..||+|..++... =++.+|..|-.. +.....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHH
Confidence 6899999887321 234457777554 344567999988874
No 171
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.50 E-value=48 Score=26.56 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=29.6
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|..|.+.+.. . . +..-+..||..|. .|-.|++.|...
T Consensus 25 ~~~C~~C~~~I~~-~-~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A-V-VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS-C-C-EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc-c-E-EEECCceECccCC--------EecCCCCCCCCC
Confidence 4689999998864 2 2 3346789999885 589998888653
No 172
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.16 E-value=41 Score=28.85 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=22.0
Q ss_pred CccccccccCC----CC--Cc-eEEcCCCCeeccchhhhh
Q 009095 367 LVCAICKDLLP----SG--TE-VIKLPCFHLYHQTCIFPW 399 (544)
Q Consensus 367 ~~C~ICle~~~----~g--~~-v~~LPCgH~FH~~CI~~W 399 (544)
..|.||+..-. .| .. +.--.|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 36999987541 11 22 333349999999999865
No 173
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.91 E-value=31 Score=21.60 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=12.7
Q ss_pred CCCCcceeccccccccC
Q 009095 9 HSSQLASCTLCRRTLVP 25 (544)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (544)
....+-.|.+|+|.|.-
T Consensus 5 ~~~~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 5 SSGKTHLCDMCGKKFKS 21 (36)
T ss_dssp CCCSSCBCTTTCCBCSS
T ss_pred CCCCCeecCcCCCCcCc
Confidence 34556789999998863
No 174
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.83 E-value=34 Score=27.90 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=22.8
Q ss_pred cccccccCC--CCCceEEcC-CCCeeccchhhhhhccCC
Q 009095 369 CAICKDLLP--SGTEVIKLP-CFHLYHQTCIFPWLSARN 404 (544)
Q Consensus 369 C~ICle~~~--~g~~v~~LP-CgH~FH~~CI~~WL~~~~ 404 (544)
||-|-..+. .+...+.-| |++.||..|-.+|=..|.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHR 66 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCC
Confidence 665544321 123335566 999999999999954443
No 175
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.52 E-value=25 Score=30.57 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=16.7
Q ss_pred EcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 384 KLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 384 ~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
...||+.| ..=+.....||.|+..-.
T Consensus 70 C~~CG~~F-----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 70 CRKCGFVF-----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp BTTTCCBC-----CCCSSCCSSCSSSCCCCB
T ss_pred hhhCcCee-----cccCCCCCCCcCCCCCcc
Confidence 34488888 122344567999987653
No 176
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=24.37 E-value=28 Score=26.76 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=19.0
Q ss_pred CCccccCCCCcceeccccccccCCCCccccccccccccccceeE
Q 009095 3 GDLVVDHSSQLASCTLCRRTLVPDNESVDDHENMHLCGDCKFLF 46 (544)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (544)
||+|+........|..|+++ ++..|.-||...
T Consensus 7 G~~il~~~~~~~~C~~C~~~------------~~~~Cs~C~~~~ 38 (64)
T 2odd_A 7 GENLYFQGDSSESCWNCGRK------------ASETCSGCNTAR 38 (64)
T ss_dssp --------CCSSSCTTTSSC------------CCEEETTTSCCE
T ss_pred CCEEeeCCCCCCcCccccCC------------CcccCCCCCChh
Confidence 67787777777889999983 467899998764
No 177
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.97 E-value=25 Score=28.26 Aligned_cols=30 Identities=17% Similarity=0.472 Sum_probs=23.6
Q ss_pred cceeccccccccCCCCccccccccccccccceeEe
Q 009095 13 LASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFL 47 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (544)
..+|.+|.-+|..+.+ +..-+|..|+..+=
T Consensus 8 iL~CP~ck~~L~~~~~-----~~~LiC~~cg~~YP 37 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRA-----QAELVCNADRLAFP 37 (70)
T ss_dssp CCBCTTTCCBEEEETT-----TTEEEETTTTEEEE
T ss_pred heECCCCCCcCEEeCC-----CCEEEcCCCCceec
Confidence 4689999999998764 45568999997653
No 178
>1f15_A Coat protein; beta barrel, icosahedral virus; 3.20A {Cucumber mosaic virus} SCOP: b.121.4.5
Probab=23.86 E-value=17 Score=34.79 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCchhhhhhhhhhhHHHHHHhhh
Q 009095 59 RRLPPRGRRTRYSSSESVENIFSHQFSHMINFALE 93 (544)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (544)
|||+||++|+-.++...---+..||...|.+++--
T Consensus 14 ~RrpRRg~R~~~~~a~ArLralt~Q~~Rl~~~~aa 48 (218)
T 1f15_A 14 RRRPRRGSRSAPSSADANFRVLSQQLSRLNKTLAA 48 (218)
T ss_dssp -----------------------------------
T ss_pred ccCCcccccCCCCccchhHHHHHHHHHHHHHHHhc
Confidence 34444444432222332345678898888887654
No 179
>1jy4_A B4dimer; eight-stranded beta-sheet, disulfide bond, de novo protein design; HET: DPR; NMR {Synthetic} SCOP: k.35.1.1 PDB: 1jy6_A*
Probab=23.52 E-value=26 Score=24.02 Aligned_cols=7 Identities=57% Similarity=1.417 Sum_probs=5.2
Q ss_pred cccceeE
Q 009095 40 GDCKFLF 46 (544)
Q Consensus 40 ~~~~~~~ 46 (544)
|+|||+|
T Consensus 2 geckftv 8 (35)
T 1jy4_A 2 GECKFTV 8 (35)
T ss_dssp CSCEEEE
T ss_pred CcceEec
Confidence 5788876
No 180
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.34 E-value=27 Score=27.82 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=24.9
Q ss_pred cceeccccccccCCCCccccccccccccccceeEeecCC
Q 009095 13 LASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFLEDVG 51 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (544)
..+|.+|.-+|.++.+ +..-+|..|+..+-=..|
T Consensus 10 iL~CP~ck~~L~~~~~-----~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 10 VLACPKDKGPLRYLES-----EQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp CCBCTTTCCBCEEETT-----TTEEEETTTTEEEEEETT
T ss_pred HhCCCCCCCcCeEeCC-----CCEEEcCCCCccccCCCC
Confidence 4689999999998764 344589999876543333
No 181
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.02 E-value=15 Score=37.34 Aligned_cols=45 Identities=22% Similarity=0.461 Sum_probs=30.2
Q ss_pred CCccccccccCCCCCceEEc---CCC--CeeccchhhhhhccCCCCCCCccc
Q 009095 366 DLVCAICKDLLPSGTEVIKL---PCF--HLYHQTCIFPWLSARNSCPLCRYE 412 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~L---PCg--H~FH~~CI~~WL~~~~tCPlCR~~ 412 (544)
...||||-..-..+ ++.. .=| |.+|.-|-..|--....||.|-..
T Consensus 182 ~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 46899998754211 1111 112 567888999998888899999764
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=69 Score=24.12 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=27.9
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
..|..|...+.. +. +..-+..||..|. .|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCCC--------ccCCCCCcCCc
Confidence 579999998853 32 3346889998885 58899888753
No 183
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.28 E-value=71 Score=25.63 Aligned_cols=41 Identities=20% Similarity=0.556 Sum_probs=30.4
Q ss_pred CCccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccCC
Q 009095 366 DLVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPTD 416 (544)
Q Consensus 366 ~~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 416 (544)
...|..|-..+...+.+ ..-+..||..|. .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 46899999988765533 456889999885 588888777543
No 184
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.18 E-value=59 Score=25.12 Aligned_cols=40 Identities=20% Similarity=0.452 Sum_probs=28.0
Q ss_pred CccccccccCCC--CCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 367 LVCAICKDLLPS--GTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 367 ~~C~ICle~~~~--g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
..|..|-..+.. .... +..-+..||..|. .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCCC
Confidence 579999998864 2222 2235788999885 58889888753
No 185
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.09 E-value=25 Score=28.45 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=16.2
Q ss_pred CCCCeeccchhhhhhccCCCCC
Q 009095 386 PCFHLYHQTCIFPWLSARNSCP 407 (544)
Q Consensus 386 PCgH~FH~~CI~~WL~~~~tCP 407 (544)
.|+|.||..|...|=. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 4999999999999944 5563
No 186
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.86 E-value=43 Score=26.48 Aligned_cols=32 Identities=19% Similarity=0.565 Sum_probs=24.2
Q ss_pred CCcceeccccccccCCCCccccccccccccccceeEeec
Q 009095 11 SQLASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFLED 49 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (544)
+++..|..|+++|++ |---+-|+-|..+|-..
T Consensus 9 ~~~~~C~~C~~~F~~-------~~RrHHCR~CG~v~C~~ 40 (73)
T 1vfy_A 9 IDSDACMICSKKFSL-------LNRKHHCRSCGGVFCQE 40 (73)
T ss_dssp CCCSBCTTTCCBCBT-------TBCCEECTTTCCEECGG
T ss_pred ccCCcccCCCCccCC-------ccccccCCCCCEEEccc
Confidence 345689999999985 45578888887776654
No 187
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.66 E-value=39 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.602 Sum_probs=26.4
Q ss_pred ccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCccccc
Q 009095 368 VCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELP 414 (544)
Q Consensus 368 ~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 414 (544)
.|..|...+...+.++. .-+..||..|. .|-.|.+.|.
T Consensus 10 ~C~~C~~~I~~~e~~~~-a~~~~~H~~CF--------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR-VKDKVYHLECF--------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCC-CSSCCCCTTTC--------BCTTTCCBCC
T ss_pred cccCCCCeecCCceEEE-ECCcccccccC--------ccccCCCCCC
Confidence 79999988865443322 24788888884 5888887773
No 188
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.64 E-value=20 Score=29.83 Aligned_cols=39 Identities=26% Similarity=0.614 Sum_probs=20.4
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccc
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYEL 413 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l 413 (544)
..||+|..++..... +.+|..|-..... ...||-|.+++
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~~~~-~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKDFSL-QALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCEEEE-EEECSSSCSCC
T ss_pred CCCCCCCCccccCCC-------ceECccccccCCC-cccCcchhhHH
Confidence 578888877643222 3334445443322 22566666655
No 189
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.59 E-value=28 Score=30.09 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=26.6
Q ss_pred CccccCCCCcceeccccccccCCCCccccccccc-cccccceeE
Q 009095 4 DLVVDHSSQLASCTLCRRTLVPDNESVDDHENMH-LCGDCKFLF 46 (544)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 46 (544)
.|.+..-...+.|.-|++.|.++. ... .|..|.-..
T Consensus 64 ~L~i~~~p~~~~C~~CG~~~e~~~-------~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 64 ILDIVDEKVELECKDCSHVFKPNA-------LDYGVCEKCHSKN 100 (119)
T ss_dssp CEEEEEECCEEECSSSSCEECSCC-------STTCCCSSSSSCC
T ss_pred EEEEEeccceEEcCCCCCEEeCCC-------CCCCcCccccCCC
Confidence 344555667889999999999853 356 899997553
No 190
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.30 E-value=22 Score=31.55 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCcceeccccccccCCCCcc-----------------ccccccccccccce
Q 009095 11 SQLASCTLCRRTLVPDNESV-----------------DDHENMHLCGDCKF 44 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 44 (544)
..-..|..|+|.+-++.... -.++..++|.+|+-
T Consensus 88 H~HliC~~Cg~v~~~~~~~~~~~~~~~~~~~gf~i~~~~l~~~GiC~~C~~ 138 (145)
T 3eyy_A 88 HIHLVCRDCTNVIEADLSVAADFTAKLREQFGFDTDMKHFAIFGRCESCSL 138 (145)
T ss_dssp SEEEEESSSSCEEEECGGGGHHHHHHHHHHTCEEECSCSSCEEEEECC---
T ss_pred ceEEEECCCCCEEEecCccHHHHHHHHHHhCCCEEEeEEEEEEEECHHHhC
Confidence 44578999999987765422 23567799999974
No 191
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=20.85 E-value=41 Score=26.77 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=22.0
Q ss_pred CCcceeccccccccCCCCccccccccccccccceeEe
Q 009095 11 SQLASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFL 47 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (544)
..+..|..|+.-+ +...-.|.+|||++=
T Consensus 33 ~~pt~C~~C~~~l---------~~qG~kC~~C~~~cH 60 (72)
T 2fnf_X 33 GGPGWCDLCGREV---------LRQALRCANCKFTCH 60 (72)
T ss_dssp SSCCBCTTTSSBC---------SSCCEECTTSSCEEC
T ss_pred CCCcchhhhhHHH---------HhCcCccCCCCCeec
Confidence 4567899999988 455678999999873
No 192
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.83 E-value=67 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.428 Sum_probs=28.5
Q ss_pred CccccccccCCCCCceEEcCCCCeeccchhhhhhccCCCCCCCcccccC
Q 009095 367 LVCAICKDLLPSGTEVIKLPCFHLYHQTCIFPWLSARNSCPLCRYELPT 415 (544)
Q Consensus 367 ~~C~ICle~~~~g~~v~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 415 (544)
..|+.|...+. ++ .+..-+..||..|. .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 57999999886 33 23446788998885 58999888864
No 193
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.61 E-value=33 Score=27.37 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=24.9
Q ss_pred cceeccccccccCCCCccccccccccccccceeEeecCC
Q 009095 13 LASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFLEDVG 51 (544)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (544)
..+|.+|..+|..+.+ +..-+|..|+..+==..|
T Consensus 8 iL~CP~ck~~L~~~~~-----~~~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQD-----KQELWSRQAKLAYPIKDG 41 (68)
T ss_dssp CCBCSSSCCBCEEETT-----TTEEEETTTTEEEEEETT
T ss_pred heECCCCCCcCeEeCC-----CCEEEcCCCCcEecCCCC
Confidence 4689999999998764 345589999876643333
No 194
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.05 E-value=28 Score=20.40 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=9.9
Q ss_pred cceeccccccccC
Q 009095 13 LASCTLCRRTLVP 25 (544)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (544)
+..|.+|+|.|.-
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4578899988864
No 195
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=20.03 E-value=31 Score=25.14 Aligned_cols=27 Identities=33% Similarity=0.785 Sum_probs=21.4
Q ss_pred CCcceeccccccccCCCCccccccccccccccceeEe
Q 009095 11 SQLASCTLCRRTLVPDNESVDDHENMHLCGDCKFLFL 47 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (544)
..+..|.+|++.+- ....|.+||+.+=
T Consensus 12 ~~pt~C~~C~~~l~----------qG~~C~~C~~~~H 38 (52)
T 1faq_A 12 LKLAFCDICQKFLL----------NGFRCQTCGYKFH 38 (52)
T ss_dssp SSCEECTTSSSEEC----------SEEECTTTTCCBC
T ss_pred CCCcCCCCcccccc----------cCCEeCCCCCeEC
Confidence 45689999999874 4568999998763
Done!