BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009096
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338
V+ + RGN+ F+++ ++EA Y ++ D + Y N + C+ G E IE A
Sbjct: 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKA 85
Query: 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379
L I+P+++KALLRRA +NE LG +++A+ D L L GD
Sbjct: 86 LEIKPDHSKALLRRASANESLGNFTDAMFDLSVL--SLNGD 124
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A ++K GN + NF EA+K Y AI + P + SN +A + G L + + +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLC 140
A+ + P +++A R AS LG +A L
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338
V+ + RGN+ F+++ ++EA Y ++ D + Y N + C+ G E IE A
Sbjct: 22 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKA 81
Query: 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379
L I+P+++KALLRRA +NE LG +++A+ D L L GD
Sbjct: 82 LEIKPDHSKALLRRASANESLGNFTDAMFDLSVL--SLNGD 120
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A ++K GN + NF EA+K Y AI + P + SN +A + G L + + +
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLC-------FPGHHPDPNELLKLQSFEKH 160
A+ + P +++A R AS LG +A L F G +P E++
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP-------MLERN 133
Query: 161 LNRCA 165
LN+ A
Sbjct: 134 LNKQA 138
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 264 SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323
SN +A + N ++ + +GN F Y A Y E +K D N+ILY NRA C +
Sbjct: 1 SNARLAYI--NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT 58
Query: 324 KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383
K+ ++ +++DC+ +R+ + K +R+A + WS+A R YE + P + E
Sbjct: 59 KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
Query: 384 ESLHN 388
E + N
Sbjct: 119 EGVRN 123
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+E K GNE ++KG++ A++ Y++A+ PENA SNRAA LT L A+ DC+
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 108 AVRLDPGYNRAHQRLAS 124
+RLD + + + R A+
Sbjct: 73 CIRLDSKFIKGYIRKAA 89
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE +K GNE + NF A+ Y KAI ++P NA Y NRAA + LG AV DCE
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 107 EAVRLDPGYNRAHQRL 122
A+ +DP Y++A+ R+
Sbjct: 71 RAICIDPAYSKAYGRM 86
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
R +T GN + A YG+ ++ + N++ +CNRA +SK+G + +++DC A+
Sbjct: 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDY-EALRRELPGDNEVAES-LHNAQVALKKS 396
I P Y+KA R ++ L + EAV Y +AL EL DNE +S L A++ L+++
Sbjct: 74 CIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL--ELDPDNETYKSNLKIAELKLREA 130
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335
K + + +GN F +++Y +A Y L+ + + Y N + C+ +G + +E
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMS 62
Query: 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379
AL ++P+Y+K LLRRA +NE LG++++A+ D L L GD
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS--LNGD 104
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110
+K GN+ +R + +A+K Y+ A+ + E+ + SN +A ++G L + V +A+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESR-- 168
L P Y++ R AS LG+ +A L + D N+ E++LN+ A S+
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK 127
Query: 169 -KIGDWKTV 176
K GD T
Sbjct: 128 EKFGDIDTA 136
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+T+ N+ F ++ Y A Y + ++ + N+I Y NR++ + + + ++ D A+ +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381
Y K RRA SN LG++ A+RDYE + + P D +
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 109
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AEE+K N+ ++ ++ A+K Y +AI ++P NA Y NR+ A+ D
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ LD Y + + R A+ LG+ A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAA 93
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110
VK GNE ++KG++ +A+K Y +AI +P++A SNRAA T L A+ DCEE ++
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 111 LDPGYNRAHQRLAS 124
L+P + + + R A+
Sbjct: 79 LEPTFIKGYTRKAA 92
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 55/97 (56%)
Query: 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333
N + + + +GN F Y +A Y E +K + ++ LY NRA C++K+ ++ +++
Sbjct: 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 334 DCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
DC ++++P + K R+A + E + +++A+ Y+
Sbjct: 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+T+ N+ F ++ Y A Y + ++ + N+I Y NR++ + + + ++ D A+ +
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382
Y K RRA SN LG++ A+RDYE + + P D +
Sbjct: 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AEE+K N+ ++ ++ A+K Y +AI ++P NA Y NR+ A+ D
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA-RHHLCFPGHHP-DPNELLKLQSFEKHLNRCA 165
A+ LD Y + + R A+ LG+ A R + P D + +K Q K + + A
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132
Query: 166 ESRKI-GD 172
R I GD
Sbjct: 133 FERAIAGD 140
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+T+ N+ F ++ Y A Y + ++ + N+I Y NR++ + + + ++ D A+ +
Sbjct: 25 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIEL 84
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381
Y K RRA SN LG++ A+RDYE + + P D +
Sbjct: 85 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 124
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AEE+K N+ ++ ++ A+K Y +AI ++P NA Y NR+ A++D
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ LD Y + + R A+ LG+ A
Sbjct: 81 AIELDKKYIKGYYRRAASNMALGKFRAA 108
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIED 334
++ V + +GN S +A Y E +K D +N +LY NR+ ++K G ++ + ED
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391
+ ++P++ K R+A + E L R+ EA R YE + + ++ E L N +
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109
E+K GN+ GN +AL+ Y +AI + P N SNR+A G +A D + V
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 110 RLDPGYNRAHQRLASLYFRLGQVENAR 136
L P + + + R A+ L + E A+
Sbjct: 66 DLKPDWGKGYSRKAAALEFLNRFEEAK 92
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AEE + G E + K ++ A+K Y + I +PE+A SNRAA L L EA++DC +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 108 AVRLDPGYNRAHQRLAS 124
A+ DP + RA+ R A+
Sbjct: 64 AIEKDPNFVRAYIRKAT 80
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340
AR G F+ + A AY E +K ++ Y NRA +K+ + +I DCN A+
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373
PN+ +A +R+A + + ++ A+ +A R
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAAR 99
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AEE + G E + K ++ A+K Y + I +PE+A SNRAA L L EA++DC +
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 108 AVRLDPGYNRAHQRLAS 124
A+ DP + RA+ R A+
Sbjct: 199 AIEKDPNFVRAYIRKAT 215
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%)
Query: 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328
A N + AR G F+ + A AY E +K ++ Y NRA +K+ +
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF 189
Query: 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373
+I DCN A+ PN+ +A +R+A + + ++ A+ +A R
Sbjct: 190 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A++ K GN+ Y+ F EA++ Y+KA + ++ Y +NRAA G A+S +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63
Query: 108 AV----RLDPGY---NRAHQRLASLYFRLGQVENA-RHHLCFPGHHPDPNELLKLQSFEK 159
AV + Y +++ R+ + Y +LG ++ ++ H + L KL++ EK
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123
Query: 160 HLNRC 164
L +
Sbjct: 124 ELKKA 128
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 147/371 (39%), Gaps = 35/371 (9%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E+ G ++ G +AL + A+ P+N RA A+G+ A+ D
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLC-FPGHHPDPNE-------LLKLQSFE 158
+ ++L + A + L + G+++ A +P NE L+K +
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144
Query: 159 KHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218
+ ++ + GD+ + D + + V +L +AE +K + A S L
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAA 203
Query: 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRF-----ENAVSSAEKAGLLDYSNVEIASVLT 273
K ++ + + + IS L + E ++S + LD + +
Sbjct: 204 SKLKNDNTEA-----------FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252
Query: 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK-------YDSYNSILYCNRAICWSKMG 326
VK + + L RY++A S Y +K Y + C+ C+SK
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH---CFSKDE 309
Query: 327 LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386
+I C+ L+++P+ AL RA + + EA++DYE + D ++ E L
Sbjct: 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
Query: 387 HNAQVALKKSR 397
AQ LK+S+
Sbjct: 370 EKAQRLLKQSQ 380
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+++++K GN + + +A+ LY +A+S++P N Y SNRAA +A G+ +A D E
Sbjct: 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARH 137
A +DP Y++A RL F + + A+
Sbjct: 70 LATVVDPKYSKAWSRLGLARFDMADYKGAKE 100
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
++ GN + + YS+A Y + L N I NRA +S G E + ED +A +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
P Y+KA R ++ + + A YE
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYE 103
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+++PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+ +A V+ PTF+ +K G+K+ E + + LE + N
Sbjct: 62 AQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+ +PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+++PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGE 490
+ +A G+R +PT ++KNGE
Sbjct: 62 AQDVAPKYGIRGIPTLLLFKNGE 84
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+ +PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F + I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
S +A V+++PTF+ +K G+K+ E + + LE + N
Sbjct: 62 SQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+ PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVD 464
G V+ ISS ++FK V ++ F C+ I P + P V F+KVD
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKIS-DTPAGDKVGFYKVD 73
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
V+E IA+ G+R +PTF +KNG+K+ ++ +PS
Sbjct: 74 VDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPS 110
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
V+ ++S +F + IS + +V F C+ I+PF Y + F KVDV+E
Sbjct: 10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS 69
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504
+ + E + ++PTFK+YKNG + ++ + L+
Sbjct: 70 EVTEKENITSMPTFKVYKNGSSVDTLLGANDSALK 104
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVND 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+ +PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+ +GN LF R+Y EA + YG + + ++ Y NRA+C+ KM E ++ DC AL +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAV 366
KA ++ + EA+
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAI 92
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+E+K GN ++ + EA Y +AI+ +P A Y +NRA + + +A++DC
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVE 133
A+ LD +AH F LGQ +
Sbjct: 64 ALELDGQSVKAH-------FFLGQCQ 82
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+ + N +GN EA++LY KA+ + PE AA SN A+ L G+L EA+ +E
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+R+ P + A+ + + + V+ A
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGA 96
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 408 GEVEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV 465
G V++I S F+ A+ + G LV F + I PF + L +Y V F +VDV
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDV 70
Query: 466 EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
++ +A V+++PTF+ +K G+K+ E + + LE + N
Sbjct: 71 DDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 113
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 145/374 (38%), Gaps = 41/374 (10%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E+ G ++ G +AL + A+ P+N RA A G+ A+ D
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLT 84
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLC-FPGHHPDPNELLKLQSFEKHLNRCA 165
+ ++L + A + L + G+++ A +P NE + QS L +
Sbjct: 85 KVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS---QLIKSD 141
Query: 166 ESRKI----------GDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCL 215
E +++ GD+ + D + + V +L +AE +K + A S L
Sbjct: 142 EXQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDL 200
Query: 216 SNMPKFEHYSPPSQVKFLVWLLKLMFNISELRF-----ENAVSSAEKAGLLDYSNVEIAS 270
K ++ + + + IS L + E ++S + LD + +
Sbjct: 201 KAASKLKNDNTEA-----------FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249
Query: 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK-------YDSYNSILYCNRAICWS 323
VK + + L RY++A S Y K Y + C+ C+S
Sbjct: 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH---CFS 306
Query: 324 KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383
K +I C+ L+ +P+ AL RA + + EA++DYE + D ++
Sbjct: 307 KDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIR 366
Query: 384 ESLHNAQVALKKSR 397
E L AQ LK+S+
Sbjct: 367 EGLEKAQRLLKQSQ 380
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+ +GN LF R+Y EA + YG + + ++ Y NRA+C+ KM E ++ DC AL +
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 342 QPNYTKA 348
KA
Sbjct: 73 DGQSVKA 79
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+E+K GN ++ + EA Y +AI+ +P A Y +NRA + + +A++DC
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVE 133
A+ LD +AH F LGQ +
Sbjct: 69 ALELDGQSVKAH-------FFLGQCQ 87
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
V + + +F +AI+ + +V F C+ I+P + +YP F+K+DV+E
Sbjct: 2 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 61
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
+A+ V +PT ++KNG+++ +++ NP+
Sbjct: 62 DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 93
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
V + + +F +AI+ + +V F C+ I+P + +YP F+K+DV+E
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 67
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
+A+ V +PT ++KNG+++ +++ NP+
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F + I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+ +A V+ PTF+ +K G+K+ E + + LE + N
Sbjct: 62 AQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F S + I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+ +PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEA 108
E+ K GN ++++G + EA+ YD+ I+ P+N SN+A L LG T+A+ C++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 109 VR 110
+R
Sbjct: 65 LR 66
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
+ + +GN+LF Y EA Y + + N + Y N+A+ K+G + +I+ C L
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Query: 340 R 340
R
Sbjct: 66 R 66
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY---NSILYCNRAICWSKMGLWENSIED 334
V + R GN LF Y A +AY + L D+ ++L+ NRA C K+ ++ + +
Sbjct: 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETE 87
Query: 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388
+ A+ KAL RR+ + EKLGR +AV D + P + E+L N
Sbjct: 88 ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 143/366 (39%), Gaps = 25/366 (6%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E+ G ++ G +AL + A+ P+N RA A G+ A+ D
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLT 61
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHL-----CFPGHHPDP---NELLKLQSFE 158
+ + L + A + L + G+++ A P + ++L+K +
Sbjct: 62 KVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQ 121
Query: 159 KHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218
+ ++ ++ D+ + D + + V +L +AE +K + A S L
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAA 180
Query: 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278
K + S ++ + + L EL ++S + LD + + VK +
Sbjct: 181 SKLK--SDNTEAFYKISTLYYQLGDHEL----SLSEVRECLKLDQDHKRCFAHYKQVKKL 234
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLK-------YDSYNSILYCNRAICWSKMGLWENS 331
+ L RY++A S Y K Y + C+ C+SK +
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH---CFSKDEKPVEA 291
Query: 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391
I C+ L+ +P+ AL RA + + EA++DYEA + D ++ E L AQ
Sbjct: 292 IRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 392 ALKKSR 397
LK+S+
Sbjct: 352 LLKQSQ 357
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
K GN+ Y+K +F ALK YDKA + P N Y +N+AA G + CE+A+ +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 112 DPGYNRAHQRLASLYFRLG----QVENARHHLCF----PGHHPDPNELLKLQSFEKHL 161
++++A Y R+G + E + + F H P+ L K Q EK L
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
K GN+ Y+K +F ALK YDKA + P N Y +N+AA G + CE+A+ +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 112 DPGYNRAHQRLASLYFRLG----QVENARHHLCF----PGHHPDPNELLKLQSFEKHL 161
++++A Y R+G + E + + F H P+ L K Q EK L
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+ + N +GN EA++LY KA+ + PE AA SN A+ L G+L EA+ +E
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 108 AVRLDPGYNRAHQRLAS 124
A+R+ P + A+ + +
Sbjct: 365 AIRISPTFADAYSNMGN 381
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
N + KG+ EA Y+ A+ + P +A +N A G + EAV +A+ + P
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 115 YNRAHQRLASLYFRLGQVENARHH 138
+ AH LAS+ + G+++ A H
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMH 361
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G+ A++ Y A+ +P+ RS+ L ALGRL EA + +A+ P + A
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 122 LASLYFRLGQVENARHHL 139
L ++ G++ A HH
Sbjct: 175 LGCVFNAQGEIWLAIHHF 192
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN +G EA++ Y A+ + P+ N AA L A G + AV
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENAR 136
A++ +P L +L LG++E A+
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAK 155
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
GN + G EA Y KAI P A SN A G + A+ E+AV LDP
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 115 YNRAHQRLASL 125
+ A+ L ++
Sbjct: 202 FLDAYINLGNV 212
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
GN + F A+ Y +A+S+SP +A N A G + A+ A+ L P
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 115 YNRAHQRLASLYFRLGQVENA 135
+ A+ LA+ G V A
Sbjct: 270 FPDAYCNLANALKEKGSVAEA 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 141/366 (38%), Gaps = 40/366 (10%)
Query: 74 AISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVE 133
AI +P A SN G+L EA+ A+RL P + + LA+ G +E
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 134 NA-RHHLCFPGHHPDPNELLK-LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191
A + ++ ++PD + L + K L R E+ K K + ET A+ +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA-KACYLKAI--ETQPNFAVAWSNL 175
Query: 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR-FEN 250
+ + E L +H E A + N FL + L + E R F+
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPN--------------FLDAYINLGNVLKEARIFDR 221
Query: 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY 310
AV++ +A L ++ + L V + A Y ++ +
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACV------------YYEQGLIDLAIDTYRRAIELQPH 269
Query: 311 NSILYCNRAICWSKMGLWENSIEDC-NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369
YCN A + G + EDC N ALR+ P + +L A + G EAVR Y
Sbjct: 270 FPDAYCNLANALKEKGSVAEA-EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 370 EALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVS 429
R+ L E A + H+ ++ + +G+ + E IS F A S+ G +
Sbjct: 329 ---RKALEVFPEFAAA-HSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGNT 382
Query: 430 LVHFKE 435
L ++
Sbjct: 383 LKEMQD 388
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F + I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+ +PTF+ +K G+K+ E + + LE + N
Sbjct: 62 CQDVASECEVKRMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE K GN Y++G++ +A++ Y KA+ + P NA+ N G +A+ ++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ LDP +A R + Y++ G + A
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKA 96
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
GN + Y +A Y + L+ D N+ + N + K G ++ +IE AL + PN
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 345 YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
KA RR + K G + +A+ DY+ P + + ++L NA+
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
GN Y++G++ +A++ Y KA+ + P NA R G +A+ D ++A+ LDP
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 115 YNRAHQRLAS 124
+A Q L +
Sbjct: 110 NAKAKQNLGN 119
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307
++ A+ +KA LD +N AS N+ GN + Y +A Y + L+
Sbjct: 25 YQKAIEYYQKALELDPNN---ASAWYNL---------GNAYYKQGDYQKAIEYYQKALEL 72
Query: 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360
D N+ + R + K G ++ +IED AL + PN KA + +K G
Sbjct: 73 DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSN 87
+A+ R GN Y++G++ +A++ Y KA+ + P NA + N
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKY---------DSYNSIL-------YCNRAICWSKMGLW 328
GN F S+ + A Y + L+Y D+ + L N C KM W
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388
+ +++ C AL I P+ TKAL RRA + L + +A+ D + + P D + L
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349
Query: 389 AQVALKKSR 397
+ +K +
Sbjct: 350 VKQKIKAQK 358
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAI----------------SMSPENAAYRSNRAAT 91
+E++K GN ++ N+ A+K Y K + + P + N A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 92 LTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
+ AV C EA+ +DP +A R A + L + + A L
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN Y++G++ EA++ Y KA+ + P NA N G EA+ ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ LDP A L + Y++ G + A
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE GN Y++G++ EA++ Y KA+ + P NA N G EA+ +
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 107 EAVRLDPGYNRAHQRLAS 124
+A+ LDP A Q L +
Sbjct: 102 KALELDPNNAEAKQNLGN 119
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
GN + Y EA Y + L+ D N+ + N + K G ++ +IE AL + PN
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 345 YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+A + K G + EA+ Y+ P + E ++L NA+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307
++ A+ +KA LD +N E L GN + Y EA Y + L+
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKALEL 72
Query: 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360
D N+ + N + K G ++ +IE AL + PN +A + +K G
Sbjct: 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
V + + +F +AI+ + +V F + I+P + +YP F+K+DV+E
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELG 67
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
+A+ V +PT ++KNG+++ +++ NP+
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
+ ++++L +F+ I ++ F C+ + P + L YP V F K DV+ES
Sbjct: 14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESP 73
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504
IAK V +PTF + K+G+ + ++I + LE
Sbjct: 74 DIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALE 108
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEG 476
E F+ S + +V F + C+ I+P L ++P V F KVDV+E A+A+
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN 76
Query: 477 VRTVPTFKIYKNGEKLKEMI 496
V +PTF K+G+ + + +
Sbjct: 77 VEAMPTFIFLKDGKLVDKTV 96
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
K GN+ Y+K +F ALK YDKA + P N Y N+AA G + CE+A+ +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 112 DPGYNR--------AHQRLASLYFRLGQVENARHHLCFP-GHHPDPNELLKLQSFEKHL 161
NR A+ R+ + YF+ + ++A H H P L K Q EK L
Sbjct: 68 GR-ENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPKVLKKCQQAEKIL 125
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 27/154 (17%)
Query: 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY--DSYNSILY------------ 315
+V + R + GN+LF + EA Y + Y D + LY
Sbjct: 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKN 230
Query: 316 ---CNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY--- 369
N A C K+ ++ +I CN+ L + KAL RR + +LG+ A D+
Sbjct: 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290
Query: 370 -------EALRRELPGDNEVAESLHNAQVALKKS 396
+A+RREL E ++L+ Q + K
Sbjct: 291 QKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRS-----------------NRAA 90
A+ K GN ++++ EA++ Y+ AI+ ++ ++ N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 91 TLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
L L R EA+ C + + +A R LGQ+++AR
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G LV F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508
+A V+ +PTF+ +K G+K+ E + + LE + N
Sbjct: 62 XQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEG 476
E+ + A S + +V F + C I+PF L + P V F KVD +E ++A
Sbjct: 29 EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWA 88
Query: 477 VRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
++ +PTF K G+ L +++ L+ +
Sbjct: 89 IQAMPTFMFLKEGKILDKVVGAKKDELQST 118
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN Y++G++ EA++ Y KA+ + P +A N G EA+ ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ LDP A L + Y++ G + A
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN Y++G++ EA++ Y KA+ + P +A N G EA+ ++
Sbjct: 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ LDP A L + Y++ G + A
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN Y++G++ EA++ Y KA+ + P +A N G EA+ ++
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128
Query: 108 AVRLDP 113
A+ LDP
Sbjct: 129 ALELDP 134
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 44/105 (41%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
GN + Y EA Y + L+ D ++ + N + K G ++ +IE AL + P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 345 YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389
+A + K G + EA+ Y+ P E +L NA
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
GN + Y EA Y + L+ D ++ + N + K G ++ +IE AL + P
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 345 YTKALLRRAVSNEKLGRWSEAVRDYE 370
+A + K G + EA+ Y+
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN 81
AE GN Y++G++ EA++ Y KA+ + P +
Sbjct: 103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 405 KMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
K+ V+ ++S + F I+ + +V F C ++P + L YP V F K++
Sbjct: 3 KVKEPVKHLNS-KNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLN 61
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
EES IA G+ ++PT +KNGE + +++
Sbjct: 62 TEESQDIAMRYGIMSLPTIMFFKNGELVDQIL 93
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEG 476
+ F + ++S +++V F C ++P + L YP V F K++ +E+ IA G
Sbjct: 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYG 66
Query: 477 VRTVPTFKIYKNGEKLKEMI 496
V ++PT +K+GE + E+I
Sbjct: 67 VMSLPTVIFFKDGEPVDEII 86
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN Y++G++ EA++ Y KA+ + P NA N G EA+ ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 108 AVRLDPGYNRAHQRLAS 124
A+ LDP A Q L +
Sbjct: 69 ALELDPNNAEAKQNLGN 85
Score = 35.4 bits (80), Expect = 0.078, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSN 87
+AE GN Y++G++ EA++ Y KA+ + P NA + N
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
GN + Y EA Y + L+ D N+ + N + K G ++ +IE AL + PN
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 345 YTKALLRRAVSNEKLG 360
+A + +K G
Sbjct: 76 NAEAKQNLGNAKQKQG 91
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376
N + K G ++ +IE AL + PN +A + K G + EA+ Y+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 377 PGDNEVAESLHNAQ 390
P + E ++L NA+
Sbjct: 74 PNNAEAKQNLGNAK 87
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN Y++G++ EA++ Y KA+ + P NA N G EA+ ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ L P A L + Y++ G + A
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE GN Y++G++ EA++ Y KA+ + P NA N G EA+ +
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 107 EAVRLDPGYNRAHQRLAS 124
+A+ L P A Q L +
Sbjct: 102 KALELYPNNAEAKQNLGN 119
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
GN + Y EA Y + L+ N+ + N + K G ++ +IE AL + PN
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 345 YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+A + K G + EA+ Y+ P + E ++L NA+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
GN + Y EA Y + L+ N+ + N + K G ++ +IE AL + PN
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Query: 345 YTKALLRRAVSNEKLG 360
+A + +K G
Sbjct: 110 NAEAKQNLGNAKQKQG 125
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
K GN Y++ +F +A YDKAI + P N + +N+AA + E V CE+AV +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFP--------GHHPDPNELLKLQSFEK 159
++ +A R G ++ L DP + K++ EK
Sbjct: 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEK 127
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 408 GEVEEISSLEKFKAAISSPG----VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
G V I++ E++ +S + L +F C++I+P+ L YP + F +
Sbjct: 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVI 83
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
DV+E + S ++ PTF ++G+++ +++
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQVDKLV 116
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
+K G++E + K K + V F C+ I+P L +Y + F KV
Sbjct: 9 LKQDGDLESLLEQHKNKLVV-------VDFFATWCGPCKTIAPLFKELSEKYDAI-FVKV 60
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
DV++ A+ + +PTF KNGEK+ +++ S +ED
Sbjct: 61 DVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVED 102
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
+K G++E + K K + V F C+ I+P L +Y + F KV
Sbjct: 18 LKQDGDLESLLEQHKNKLVV-------VDFFATWCGPCKTIAPLFKELSEKYDAI-FVKV 69
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
DV++ A+ + +PTF KNGEK+ +++ S +ED
Sbjct: 70 DVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVED 111
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 410 VEEISSLEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES 468
V ++ S ++ +A++S + +V F C+ I+P + +Y F+K+DV+E
Sbjct: 9 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEV 68
Query: 469 LAIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
+A+ V ++PT YK G+++ ++ NP+
Sbjct: 69 SDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 101
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 410 VEEISSLEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES 468
V ++ S ++ +A++S + +V F C+ I+P + +Y F+K+DV+E
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEV 61
Query: 469 LAIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
+A+ V ++PT YK G+++ ++ NP+
Sbjct: 62 SDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 94
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V ++ E F ++ G LV F C+ I+P + L V F KVDV+E
Sbjct: 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDE 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEM 495
IA+ + +PTF KNG+KL +
Sbjct: 62 CEDIAQDNQIACMPTFLFMKNGQKLDSL 89
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489
++ F + C I+P ++P F KVDV+E +A++ V +PTF K+G
Sbjct: 32 IIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDG 91
Query: 490 EKLKEMI 496
EK+ ++
Sbjct: 92 EKVDSVV 98
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGL------------------KYDSYNSILYC 316
+K V R +GN LF + Y EA AY + L + D N LY
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376
N + C+ +G + E + L+ + KAL RRA + + EA D + L R
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 377 PG 378
P
Sbjct: 128 PA 129
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 410 VEEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V+ + S F+ +S G +++V F C I+P + + +YP F +VDV +
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKE 494
A + + PTF+ ++N ++ +
Sbjct: 63 CQGTAATNNISATPTFQFFRNKVRIDQ 89
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 409 EVEEISSLEKFKAAISSPGVS----LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
EV + SLE++ I + ++ F + C ++P L ++P F KVD
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVD 72
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGE 490
V+E IA+ V +PTF K G+
Sbjct: 73 VDELKPIAEQFSVEAMPTFLFMKEGD 98
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AE GN Y++G++ EA++ Y KA+ + P +A N G EA+ ++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 108 AVRLDP 113
A+ LDP
Sbjct: 63 ALELDP 68
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN 81
AE GN Y++G++ EA++ Y KA+ + P +
Sbjct: 37 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
V ++ S+E+F+ +S +++ F C+ I + + +P V F KVD + +
Sbjct: 21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNS 80
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMI--NP 498
I V +PTF I ++G+ L +I NP
Sbjct: 81 EIVSKCRVLQLPTFIIARSGKMLGHVIGANP 111
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499
C+ ISP + L ++ V KVDV+E IA + ++PTF KNG K++E +
Sbjct: 35 CKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGAN 94
Query: 500 HQFLED 505
+ LED
Sbjct: 95 AKRLED 100
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 406 MSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVD 464
M+G ++ ++ + + + LV F A C +I+P + + Y + K++
Sbjct: 3 MAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLN 62
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
++E+ A GV ++PT +Y+ GE K ++
Sbjct: 63 IDENPGTAAKYGVMSIPTLNVYQGGEVAKTIV 94
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499
C+ ISP + L ++ V KVDV+E IA + ++PTF KNG K++E +
Sbjct: 40 CKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGAN 99
Query: 500 HQFLED 505
+ LED
Sbjct: 100 AKRLED 105
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F + + S GV LV F + C+ I+P + L Y K+DV+E+ + A V
Sbjct: 13 FDSKVES-GVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV 71
Query: 478 RTVPTFKIYKNGEKLKEMI 496
++PT ++K+G+ + +++
Sbjct: 72 MSIPTLIVFKDGQPVDKVV 90
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 410 VEEISSLEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES 468
V ++ S ++ +A++S + +V F + I+P + +Y F+K+DV+E
Sbjct: 10 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEV 69
Query: 469 LAIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
+A+ V ++PT YK G+++ ++ NP+
Sbjct: 70 SDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 102
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 441 CEEISPFVNLLCVRYPYVHFFKVDV-EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499
C+ ++P L Y V F K+D +E+ +AK G+R VPTFKI K + E+
Sbjct: 40 CKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 99
Query: 500 HQFLEDSANLAPS 512
+ L ++ A S
Sbjct: 100 YDKLLEAIQAARS 112
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 441 CEEISPFVNLLCVRYPYVHFFKVDV-EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499
C+ ++P L Y V F K+D +E+ +AK G+R VPTFKI K + E+
Sbjct: 52 CKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 111
Query: 500 HQFLEDSANLAPS 512
+ L ++ A S
Sbjct: 112 YDKLLEAIQAARS 124
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 408 GEVEEISSLEKFKAAISSPG----VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
G V I++ E++ +S + L +F +I+P+ L YP + F +
Sbjct: 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVI 83
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
DV+E + S ++ PTF ++G+++ +++
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQVDKLV 116
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 410 VEEISSLEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES 468
V ++ S ++ +A++S + +V F + I+P + +Y F+K+DV+E
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEV 61
Query: 469 LAIAKSEGVRTVPTFKIYKNGEKLKEMI--NPS 499
+A+ V ++PT YK G+++ ++ NP+
Sbjct: 62 SDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPA 94
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEE 467
EV++++ + + S +V F C+ I+P ++ L Y + +K++ +E
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+ IA +R++PT +KNGE+ + +I
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESII 89
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDC 105
+ EE G Y GN+ E++ L++KAI + PE + Y + L L R EAV DC
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV-DC 62
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ I+P ++ L Y + +K++ +E+ IA +R++PT +KNGE+ + +I
Sbjct: 32 CKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESII 88
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 428 VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487
V ++ F + C I+P ++P F KVDV+E +A+ V +PTF K
Sbjct: 38 VVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 488 NGEKLKEMINPSHQFLEDS 506
+G + +++ L+++
Sbjct: 98 DGAEADKVVGARKDDLQNT 116
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 35/183 (19%)
Query: 212 DSCLSNMPKFEH---YSPPSQVKFLVWLLKLMFNI---SELRFENAVSSAEKAGLLDYSN 265
+ + M K EH Y PS V K F I +EL++E + S EKA N
Sbjct: 82 ERAIQRMEKGEHSIVYLKPSYAFGSVG--KEKFQIPPNAELKYELHLKSFEKAKESWEMN 139
Query: 266 VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL----------- 314
E ++ + RG F +Y +A Y + + + Y S
Sbjct: 140 SE-----EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 315 ----YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ N A+C K+ + +IE CN AL + N K L RR G AV D+E
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRR-------GEAHLAVNDFE 247
Query: 371 ALR 373
R
Sbjct: 248 LAR 250
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F + + S GV LV F C+ I+P + L Y K+DV+E+ + A V
Sbjct: 13 FDSKVES-GVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV 71
Query: 478 RTVPTFKIYKNGEKLKEMI 496
++PT ++K+G+ + +++
Sbjct: 72 MSIPTLIVFKDGQPVDKVV 90
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFF-KVDVEESLAIAKSEGV 477
+ ++++P L +F S+ C +++P + L +Y K+D + IA G+
Sbjct: 21 LEQSMTTP--VLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGL 78
Query: 478 RTVPTFKIYKNGEKLKEMINPS 499
R +PT +++NG+ + P
Sbjct: 79 RAIPTVYLFQNGQPVDGFQGPQ 100
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F + + S GV LV F C+ I+P + L Y K+DV+E+ + A V
Sbjct: 14 FDSKVES-GVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV 72
Query: 478 RTVPTFKIYKNGEKLKEMI 496
++PT ++K+G+ + +++
Sbjct: 73 MSIPTLIVFKDGQPVDKVV 91
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F + + S GV LV F C+ I+P + L Y K+DV+E+ + A V
Sbjct: 14 FDSKVES-GVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV 72
Query: 478 RTVPTFKIYKNGEKLKEMI 496
++PT ++K+G+ + +++
Sbjct: 73 MSIPTLIVFKDGQPVDKVV 91
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 441 CEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492
C I+P V L P V F KVDV+++ A V +PTF K+G+++
Sbjct: 34 CRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEV 85
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F+ AI G LV F A C ++P + + V K++V+E+ G+
Sbjct: 10 FQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 478 RTVPTFKIYKNGEKLKEMI--NPSHQF 502
++PT ++K GE +K++I P Q
Sbjct: 70 MSIPTLILFKGGEPVKQLIGYQPKEQL 96
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489
+VHF + +C +++ + L P V F K++ E +++ + +VPTF +KN
Sbjct: 42 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNS 101
Query: 490 EKLKEM 495
+K+ +
Sbjct: 102 QKIDRL 107
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFF--KVDVEESLAIAKSEGVRTVPTFKIYK 487
L +F S+ C +++P + L +Y + F K+D + IA G+R +PT +++
Sbjct: 30 LFYFWSERSQHCLQLTPVLESLAAQY-HGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQ 88
Query: 488 NGEKLKEMINPS 499
NG+ + P
Sbjct: 89 NGQPVDGFQGPQ 100
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 417 EKFKAAISSPGVS-LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKS 474
+ FK + V LV F C I+P V+ + Y + K++ +ES +A
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 475 EGVRTVPTFKIYKNGEKLKEMI 496
G+R++PT ++K G+K + +I
Sbjct: 69 YGIRSIPTIMVFKGGKKCETII 90
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489
+VHF + +C +++ + L P V F K++ E +++ + +VPTF +KN
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNS 95
Query: 490 EKLKEM 495
+K+ +
Sbjct: 96 QKIDRL 101
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 409 EVEEISSLEKFKAAISSPGVS----LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
EV + SLE++ I + ++ F + ++P L ++P F KVD
Sbjct: 16 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVD 75
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGE 490
V+E IA+ V +PTF K G+
Sbjct: 76 VDELKPIAEQFSVEAMPTFLFMKEGD 101
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 22/133 (16%)
Query: 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY- 307
EN K + DY++ E V+ + GN F +EA Y E L +
Sbjct: 15 ENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF 68
Query: 308 ------------DSYNSI-LYCNR--AICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
D +I + CN A C++K + +I+ + L+I N KAL +
Sbjct: 69 IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKL 128
Query: 353 AVSNEKLGRWSEA 365
V+N G EA
Sbjct: 129 GVANMYFGFLEEA 141
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRS----------------NRAAT 91
A ++K GNE ++K EA+ Y +A+ + N A
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 92 LTALGRLTEAVSDCEEAVRLDPGYNRAHQRL--ASLYFRLGQVENARHHLCFPGHHPDPN 149
+A+ + +++D +A +L A++YF G +E A+ +L + +PN
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--GFLEEAKENL-YKAASLNPN 154
Query: 150 ELLKLQSFEKHLNRCAESRK 169
L S+E +N+ E+RK
Sbjct: 155 NLDIRNSYELCVNKLKEARK 174
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNM--KMS----- 407
S E+ R +V++YE + ++ +N L+K R + + +M K+S
Sbjct: 64 SKERFSR-KMSVQEYELIHKDKEDEN-----------CLRKYRRQCMQDMHQKLSFGPRY 111
Query: 408 GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
G V E+ S E+F I +VH E + C+ ++ + L YP V F K+
Sbjct: 112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIK 171
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
+ A + +PT +YK GE L I+ + Q E+
Sbjct: 172 ASNTGAGDRFSS-DVLPTLLVYKGGELLSNFISVTEQLAEE 211
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 27/145 (18%)
Query: 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303
+EL++E + S EKA N E ++ + RG F +Y +A Y +
Sbjct: 118 AELKYELHLKSFEKAKESWEXNSE-----EKLEQSTIVKERGTVYFKEGKYKQALLQYKK 172
Query: 304 GLKYDSYNSIL---------------YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
+ + Y S + N A+C K+ + +IE CN AL + N K
Sbjct: 173 IVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKG 232
Query: 349 LLRRAVSNEKLGRWSEAVRDYEALR 373
L RR G AV D+E R
Sbjct: 233 LSRR-------GEAHLAVNDFELAR 250
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 49/248 (19%)
Query: 145 HPDPNELLKLQSFEKHL-NRCAESRKIGDWK----TVLRETDAAIAIGVDSSPQLVACKA 199
+ +PNE ++Q HL RC ++ D + TV D I IG+D + L +
Sbjct: 159 YSNPNEGARVQI---HLEGRCG--GRVFDCRDVAFTVGEGEDHDIPIGIDKA--LEKMQR 211
Query: 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAG 259
E LH + PKF P ++ L++ ++ FE A S E
Sbjct: 212 EEQCILHLGPRYGFGEAGKPKF-GIEPNAE---------LIYEVTLKSFEKAKESWE--- 258
Query: 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------------ 307
+ +E A+++ + +G F +Y +A YG+ + +
Sbjct: 259 MDTKEKLEQAAIV---------KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKES 309
Query: 308 ---DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSE 364
+S+ + N A+C+ K+ + ++E C+ AL + K L RR + + +
Sbjct: 310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 369
Query: 365 AVRDYEAL 372
A D+E +
Sbjct: 370 AKGDFEKV 377
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F CE I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 393 LKKSRGEFVNNM--KMS-----GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCE 442
L+K R + + +M K+S G V E+ + E+F I +V+ E C+
Sbjct: 90 LRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCD 149
Query: 443 EISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQF 502
++ + L YP V F K+ + A + +PT +YK GE + I+ + QF
Sbjct: 150 ALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSS-DVLPTLLVYKGGELISNFISVAEQF 208
Query: 503 LED 505
ED
Sbjct: 209 AED 211
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 393 LKKSRGEFVNNM--KMS-----GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCE 442
L+K R + + +M K+S G V E+ + E+F I +V+ E C+
Sbjct: 90 LRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCD 149
Query: 443 EISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQF 502
++ + L YP V F K+ + A + +PT +YK GE + I+ + QF
Sbjct: 150 ALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSS-DVLPTLLVYKGGELISNFISVAEQF 208
Query: 503 LED 505
ED
Sbjct: 209 AED 211
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 27 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 86
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 87 TLLLFKNGE 95
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R++P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 444 ISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
I+P ++ L Y + +K++ +E+ IA +R++PT +KNGE+ + +I
Sbjct: 36 IAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESII 89
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 408 GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
G V E+ + E+F I +V+ E C+ ++ + L YP V F K+
Sbjct: 99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPXVKFCKIR 158
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
+ A + +PT +YK GE + I+ + QF ED
Sbjct: 159 ASNTGAGDRFSS-DVLPTLLVYKGGELISNFISVAEQFAED 198
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F+ AI G LV F A C ++P + + V K++V+E+ G+
Sbjct: 10 FQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 478 RTVPTFKIYKNGEKLKEMI--NPSHQF 502
++PT ++K G +K++I P Q
Sbjct: 70 MSIPTLILFKGGRPVKQLIGYQPKEQL 96
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 35.0 bits (79), Expect = 0.097, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 444 ISPFVNLLCVRYPYVHFFKVDV-EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQF 502
++P L Y V F K+D +E+ +AK G+R VPTFKI K + E+ +
Sbjct: 42 MAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDK 101
Query: 503 LEDSANLAPS 512
L ++ A S
Sbjct: 102 LLEAIQAARS 111
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F+ AI LV F A C ++P + + V K++V+E+ G+
Sbjct: 10 FQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 478 RTVPTFKIYKNGEKLKEMI--NPSHQF 502
++PT ++K GE +K++I P Q
Sbjct: 70 MSIPTLILFKGGEPVKQLIGYQPKEQL 96
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F ++ ++LV F C +SP + L + + KV+V+E +A GV
Sbjct: 43 FAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGV 102
Query: 478 RTVPTFKIYKNGEKLKEMINPS 499
R+VPT +++ G + + S
Sbjct: 103 RSVPTLVLFRRGAPVATWVGAS 124
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 423 ISSPGVSLVHF-KEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTV 480
+ + G LV F E C+ I+P ++ + Y + K++++++ A G+R +
Sbjct: 17 LKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGI 76
Query: 481 PTFKIYKNGE 490
PT ++KNGE
Sbjct: 77 PTLLLFKNGE 86
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 67 ALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126
A+ L K +P N R L LGR EA+ + A+ L P + H+ +A Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFE 158
++G RH P H NEL + S E
Sbjct: 155 EQMG-----RHEEALP-HFKKANELDEGASVE 180
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
+ +G ++ +I+ +AL ++PN K A S E++GR EA+
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 67 ALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126
A+ L K +P N R L LGR EA+ + A+ L P + H+ +A Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 127 FRLGQVENARHHLCFPGHHPDPNEL 151
++G RH P H NEL
Sbjct: 155 EQMG-----RHEEALP-HFKKANEL 173
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
+ +G ++ +I+ +AL ++PN K A S E++GR EA+
Sbjct: 117 GVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G F A+ ++ A+++ PE+ + + ATL R EAV A+ + PG+ R+
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286
Query: 122 LASLYFRLG 130
L LG
Sbjct: 287 LGISCINLG 295
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 67 ALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126
A+ L K +P N R L LGR EA+ + A+ L P + H+ +A Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 127 FRLGQVENARHHLCFPGHHPDPNEL 151
++G RH P H NEL
Sbjct: 155 EQMG-----RHEEALP-HFKKANEL 173
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
+ +G ++ +I+ +AL ++PN K A S E++GR EA+
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F + + S GV LV F + I+P + L Y K+DV+E+ + A V
Sbjct: 14 FDSKVES-GVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV 72
Query: 478 RTVPTFKIYKNGEKLKEMI 496
++PT ++K+G+ + +++
Sbjct: 73 MSIPTLIVFKDGQPVDKVV 91
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 421 AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVDVEESLAIAKSEGVRT 479
+A +S GV L F C+ I+P + L + K+DV+E+ A GV +
Sbjct: 12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS 71
Query: 480 VPTFKIYKNGE 490
+PT + K+GE
Sbjct: 72 IPTLLVLKDGE 82
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 441 CEEISP-FVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEM 495
C +P F R V F KV+ E A++ +R++PT +Y+NG+ + +
Sbjct: 70 CRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRNGKXIDXL 125
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P + + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 41/214 (19%)
Query: 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234
TV D I IG+D + L + + + C+ + + + KF +
Sbjct: 189 TVGEGEDHDIPIGIDKA-------------LEKMQREEQCILYLGPRYGFGEAGKPKFGI 235
Query: 235 WL-LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR 293
+L++ ++ FE A S E + +E A+++ + +G F +
Sbjct: 236 EPNAELIYEVTLKSFEKAKESWE---MDTKEKLEQAAIV---------KEKGTVYFKGGK 283
Query: 294 YSEACSAYGEGLKY---------------DSYNSILYCNRAICWSKMGLWENSIEDCNVA 338
Y +A YG+ + + +S+ + N A+C+ K+ + ++E C+ A
Sbjct: 284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343
Query: 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372
L + K L RR + + + A D+E +
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 415 SLEK-----FKAAISSPG-VSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEE 467
SLEK F+ I G LV F + C++++P + L + Y F+ VDVEE
Sbjct: 5 SLEKLDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE 64
Query: 468 SLAIAKSEGVRTVPTFKIYKNGE 490
+ + ++ VP +K+GE
Sbjct: 65 EKTLFQRFSLKGVPQILYFKDGE 87
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 430 LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488
+V F C+ I+P L Y V F KVDV+ A+A++ G+ +PTF +YK+
Sbjct: 28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 489 GEKLKEMINPSHQFLE 504
G K +++ S L+
Sbjct: 88 GVKADDLVGASQDKLK 103
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R P
Sbjct: 18 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTP 77
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 78 TLLLFKNGE 86
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 430 LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488
+V F C+ I+P L Y V F KVDV+ A+A++ G+ +PTF +YK+
Sbjct: 28 VVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 489 GEKLKEMINPSHQFLE 504
G K +++ S L+
Sbjct: 88 GVKADDLVGASQDKLK 103
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 67 ALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126
A+ L K +P N R L LGR EA+ + A+ L P + H+ +A Y
Sbjct: 95 AVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSY 154
Query: 127 FRLGQVENARHHL 139
++G E A H
Sbjct: 155 EQMGSHEEALPHF 167
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISP----FVNLLCVRYPYVHFFKVDVEESLAIA 472
+ F +++ + LV F C++++P L R P + KVD E +A
Sbjct: 15 DNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLA 74
Query: 473 KSEGVRTVPTFKIYKNG 489
K V PT KI++ G
Sbjct: 75 KRFDVSGYPTLKIFRKG 91
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPT-F 483
+PG+ LV F C+ + + + V F KVDV+++ A + GV ++P F
Sbjct: 22 APGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALF 81
Query: 484 KIYKNGEKLKEM 495
+ K G ++K +
Sbjct: 82 FVKKEGNEIKTL 93
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNG+
Sbjct: 77 TLLLFKNGD 85
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISP----FVNLLCVRYPYVHFFKVD 464
EV + + E F ++ + LV F C++++P L R P + KVD
Sbjct: 130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNG 489
+AK V PT KI++ G
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRKG 214
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISP----FVNLLCVRYPYVHFFKVDVEESLAIAKS 474
F A+++ LV F C+ ++P L + KVD E +A+
Sbjct: 17 FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQ 76
Query: 475 EGVRTVPTFKIYKNGE 490
GVR PT K ++NG+
Sbjct: 77 YGVRGYPTIKFFRNGD 92
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F+ AI LV F A C ++P + + V K++V+E+ G+
Sbjct: 10 FQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 478 RTVPTFKIYKNGEKLKEMI--NPSHQF 502
++PT ++K G +K++I P Q
Sbjct: 70 MSIPTLILFKGGRPVKQLIGYQPKEQL 96
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 73 KAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQV 132
+A+ + P++A + ATL R EA+ A+ ++PGY R +A Y + Q
Sbjct: 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 133 ENARHHLC 140
+ A L
Sbjct: 257 DLAAKQLV 264
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 73 KAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQV 132
+A+ + P++A + ATL R EA+ A+ ++PGY R +A Y + Q
Sbjct: 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 133 ENARHHLC 140
+ A L
Sbjct: 257 DLAAKQLV 264
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490
C+ I+P ++ + Y + K++++++ A G+R +PT ++KNGE
Sbjct: 50 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 417 EKFKAAIS---SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIA 472
+ F++ IS S G+ LV F C+ ++P R V KVD +
Sbjct: 9 DNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTC 68
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMINP 498
GV PT KI+++GE+ P
Sbjct: 69 NKYGVSGYPTLKIFRDGEEAGAYDGP 94
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G + +A+ + A+S+ P + + ATL + EAV+ A+ L PGY R+
Sbjct: 182 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 241
Query: 122 LASLYFRLGQVENARHHL 139
L LG A H
Sbjct: 242 LGISCINLGAHREAVEHF 259
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G + +A+ + A+S+ P + + ATL + EAV+ A+ L PGY R+
Sbjct: 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
Query: 122 LASLYFRLGQVENARHHL 139
L LG A H
Sbjct: 291 LGISCINLGAHREAVEHF 308
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G + +A+ + A+S+ P + + ATL + EAV+ A+ L PGY R+
Sbjct: 168 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 227
Query: 122 LASLYFRLGQVENARHHL 139
L LG A H
Sbjct: 228 LGISCINLGAHREAVEHF 245
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G + +A+ + A+S+ P + + ATL + EAV+ A+ L PGY R+
Sbjct: 191 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
Query: 122 LASLYFRLGQVENARHHL 139
L LG A H
Sbjct: 251 LGISCINLGAHREAVEHF 268
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 58 MYRKGNFVEALKL-------YDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110
+Y +G ++L L + +A+++ P+ + LT G A + +
Sbjct: 46 LYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 111 LDPGYNRAH-QRLASLYFRLGQVENARHHLCFPGHHPDPNE 150
LDP YN AH R +LY+ G + + DPN+
Sbjct: 106 LDPTYNYAHLNRGIALYY--GGRDKLAQDDLLAFYQDDPND 144
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G + +A+ + A+S+ P + + ATL + EAV+ A+ L PGY R+
Sbjct: 191 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
Query: 122 LASLYFRLGQVENARHHL 139
L LG A H
Sbjct: 251 LGISCINLGAHREAVEHF 268
>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr44
Length = 273
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY 115
+G +AL+L +AI SP++A+ RS+ L G A ++++L P Y
Sbjct: 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLXQSIKLFPEY 64
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+ ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F + I+P ++ + Y + K++++++ A G+R +P
Sbjct: 37 LKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 96
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 97 TLLLFKNGE 105
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F + I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F + I+P ++ + Y + K++++++ A G+R +P
Sbjct: 17 LKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 164 CAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK--LHQN 208
C +R++ D E DA +A GV +P ++CK+E +K HQ
Sbjct: 104 CDIARQVAD------EGDALVAGGVSQTPSYLSCKSETEVKKIFHQQ 144
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 462 KVDVEESLAIAKSEGVRTVPTFKIYKNGE 490
K+DV+E+ A GV ++PT + K+GE
Sbjct: 54 KIDVDENQETAGKYGVMSIPTLLVLKDGE 82
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 462 KVDVEESLAIAKSEGVRTVPTFKIYKNGE 490
K+DV+E+ A GV ++PT + K+GE
Sbjct: 54 KIDVDENQETAGKYGVMSIPTLLVLKDGE 82
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSE 475
+ F + + LV F C I+P + + Y + K+DV+E+ A
Sbjct: 10 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRY 69
Query: 476 GVRTVPTFKIYKNGEKLKEMI 496
V ++PT ++K+G+ ++ ++
Sbjct: 70 RVXSIPTVILFKDGQPVEVLV 90
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSE 475
+ F + + LV F C I+P + + Y + K+DV+E+ A
Sbjct: 9 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRY 68
Query: 476 GVRTVPTFKIYKNGEKLKEMI 496
V ++PT ++K+G+ ++ ++
Sbjct: 69 RVXSIPTVILFKDGQPVEVLV 89
>pdb|1VFI|A Chain A, Solution Structure Of Vanabin2 (Ruh-017), A Vanadium-
Binding Protein From Ascidia Sydneiensis Samea
Length = 95
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 163 RCAES-RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKF 221
+CAES D KT R A D PQ C A +K H+ A +C S PK
Sbjct: 26 KCAESCETSADKKTCRRNCKKA-----DCEPQDKVCDA-CRMKCHKACRAANCASECPKH 79
Query: 222 EHYS 225
EH S
Sbjct: 80 EHKS 83
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G++ KG+F A++ Y K + P N T +G +A+ ++ V LD
Sbjct: 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 115 YNRAHQRLASLYFRLGQVENARHHL 139
A+ L S F + + + A L
Sbjct: 72 SAEAYYILGSANFMIDEKQAAIDAL 96
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCV-RYPYVHFFKVDVEESLAIAKSEGVRTVP 481
+SS LV F C+ ++P + + R + K+DV+ + A++ V ++P
Sbjct: 27 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIP 86
Query: 482 TFKIYKNGEKLKEMI 496
T ++K+G+ +K ++
Sbjct: 87 TLILFKDGQPVKRIV 101
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCV-RYPYVHFFKVDVEESLAIAKSEGVRTVP 481
+SS LV F C+ ++P + + R + K+DV+ + A++ V ++P
Sbjct: 22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIP 81
Query: 482 TFKIYKNGEKLKEMI 496
T ++K+G+ +K ++
Sbjct: 82 TLILFKDGQPVKRIV 96
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 430 LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488
LV F C I+P + L Y V KV+V+E+ A G+R++PT ++KN
Sbjct: 23 LVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKN 82
Query: 489 GEKLKEMI 496
G+ + ++
Sbjct: 83 GQVVDRLV 90
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 28.5 bits (62), Expect = 9.2, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 429 SLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPT 482
++V F C+ ++P ++ L Y + +KVD E+ +A + G+R++P+
Sbjct: 41 AIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVP 481
+ + G LV F C+ I+P ++ + Y + K++++++ A R +P
Sbjct: 17 VKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIP 76
Query: 482 TFKIYKNGE 490
T ++KNGE
Sbjct: 77 TLLLFKNGE 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,254,148
Number of Sequences: 62578
Number of extensions: 578557
Number of successful extensions: 1791
Number of sequences better than 100.0: 194
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1464
Number of HSP's gapped (non-prelim): 317
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)