Query 009096
Match_columns 543
No_of_seqs 929 out of 4639
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 20:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.5E-42 3.3E-47 322.6 23.0 339 29-394 165-504 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 5.6E-40 1.2E-44 305.6 23.7 344 37-395 105-471 (966)
3 KOG0624 dsRNA-activated protei 100.0 4.9E-34 1.1E-38 248.2 30.5 356 43-405 33-400 (504)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.6E-32 3.6E-37 283.3 38.1 314 48-380 127-501 (615)
5 PRK15174 Vi polysaccharide exp 100.0 1.3E-32 2.8E-37 282.8 32.2 330 24-380 52-386 (656)
6 TIGR00990 3a0801s09 mitochondr 100.0 9.6E-32 2.1E-36 277.6 33.5 344 30-397 143-559 (615)
7 PRK11447 cellulose synthase su 100.0 2.9E-30 6.2E-35 283.4 34.4 335 28-381 283-706 (1157)
8 PRK15174 Vi polysaccharide exp 100.0 1.1E-29 2.3E-34 261.2 35.5 321 47-394 41-366 (656)
9 KOG0547 Translocase of outer m 100.0 9.1E-30 2E-34 231.8 29.8 333 47-398 114-555 (606)
10 PRK11447 cellulose synthase su 100.0 3.2E-29 7E-34 275.2 36.0 355 29-396 162-687 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-29 1.1E-33 272.7 36.2 347 33-395 450-819 (899)
12 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-29 8.4E-34 273.7 35.0 342 33-395 518-886 (899)
13 KOG0548 Molecular co-chaperone 100.0 5E-28 1.1E-32 224.0 31.9 344 50-396 4-476 (539)
14 KOG0550 Molecular chaperone (D 100.0 5.1E-29 1.1E-33 222.5 22.9 339 34-405 35-379 (486)
15 PRK10049 pgaA outer membrane p 100.0 1.9E-27 4.1E-32 249.9 35.6 352 30-384 65-465 (765)
16 KOG1126 DNA-binding cell divis 100.0 5.2E-27 1.1E-31 222.7 25.7 309 49-383 318-628 (638)
17 PRK11788 tetratricopeptide rep 100.0 7.9E-26 1.7E-30 222.3 33.5 284 47-386 34-322 (389)
18 KOG0547 Translocase of outer m 100.0 8.6E-27 1.9E-31 212.5 23.5 340 26-392 127-583 (606)
19 PRK10049 pgaA outer membrane p 100.0 1.1E-25 2.3E-30 236.7 35.4 351 30-395 31-442 (765)
20 KOG2002 TPR-containing nuclear 99.9 2.3E-25 4.9E-30 219.2 30.1 357 32-394 148-578 (1018)
21 PRK09782 bacteriophage N4 rece 99.9 6.7E-25 1.5E-29 230.6 35.9 325 38-393 366-724 (987)
22 KOG2002 TPR-containing nuclear 99.9 4.3E-25 9.2E-30 217.3 29.7 345 47-397 306-767 (1018)
23 PRK09782 bacteriophage N4 rece 99.9 1.3E-24 2.9E-29 228.4 31.1 296 67-394 460-758 (987)
24 KOG1155 Anaphase-promoting com 99.9 1.1E-23 2.3E-28 191.3 32.4 323 46-388 162-549 (559)
25 KOG1126 DNA-binding cell divis 99.9 1E-24 2.2E-29 207.2 22.0 286 83-396 318-607 (638)
26 KOG2076 RNA polymerase III tra 99.9 5.3E-23 1.2E-27 201.4 31.8 321 44-376 135-513 (895)
27 KOG1173 Anaphase-promoting com 99.9 3.4E-23 7.3E-28 192.8 28.1 289 45-393 241-536 (611)
28 PRK11788 tetratricopeptide rep 99.9 3.1E-23 6.7E-28 203.9 27.9 287 29-374 50-346 (389)
29 KOG1155 Anaphase-promoting com 99.9 7E-22 1.5E-26 179.6 30.0 298 81-402 163-488 (559)
30 PRK14574 hmsH outer membrane p 99.9 2.1E-21 4.7E-26 200.3 33.2 345 30-384 84-522 (822)
31 KOG0910 Thioredoxin-like prote 99.9 7.2E-24 1.6E-28 164.9 9.6 99 414-512 49-149 (150)
32 PF13429 TPR_15: Tetratricopep 99.9 7.3E-24 1.6E-28 197.4 10.7 263 51-375 11-277 (280)
33 KOG0624 dsRNA-activated protei 99.9 1.1E-21 2.4E-26 171.6 21.9 308 30-353 54-382 (504)
34 PRK14574 hmsH outer membrane p 99.9 4.9E-20 1.1E-24 190.3 36.6 352 27-398 47-502 (822)
35 KOG1125 TPR repeat-containing 99.9 1.2E-21 2.6E-26 183.4 20.3 259 51-396 288-558 (579)
36 TIGR00540 hemY_coli hemY prote 99.9 3E-20 6.5E-25 181.9 31.1 303 48-375 84-399 (409)
37 KOG1174 Anaphase-promoting com 99.9 2.1E-20 4.6E-25 167.5 25.9 317 53-394 201-519 (564)
38 KOG0495 HAT repeat protein [RN 99.9 2.3E-19 5.1E-24 169.7 33.9 330 33-394 535-865 (913)
39 PRK12370 invasion protein regu 99.9 2.9E-20 6.2E-25 188.8 28.9 248 64-374 277-534 (553)
40 KOG2003 TPR repeat-containing 99.9 2.6E-21 5.7E-26 175.3 16.8 207 168-393 501-707 (840)
41 KOG2076 RNA polymerase III tra 99.9 4E-20 8.8E-25 181.5 26.0 345 16-373 140-553 (895)
42 KOG1173 Anaphase-promoting com 99.9 5.8E-20 1.3E-24 171.5 24.3 263 37-356 267-533 (611)
43 PRK11189 lipoprotein NlpI; Pro 99.9 5.2E-20 1.1E-24 171.5 24.3 124 61-226 39-166 (296)
44 KOG0548 Molecular co-chaperone 99.9 5.2E-20 1.1E-24 171.2 23.6 332 28-371 16-485 (539)
45 PRK10747 putative protoheme IX 99.9 8.1E-19 1.7E-23 170.8 33.2 299 47-376 83-391 (398)
46 KOG0907 Thioredoxin [Posttrans 99.9 1.7E-21 3.7E-26 147.4 11.2 86 425-510 20-105 (106)
47 PLN03081 pentatricopeptide (PP 99.9 7.7E-19 1.7E-23 184.6 33.5 404 47-490 188-655 (697)
48 cd02954 DIM1 Dim1 family; Dim1 99.9 1.4E-21 3E-26 148.5 8.6 82 417-498 3-87 (114)
49 PHA02278 thioredoxin-like prot 99.9 3E-21 6.5E-26 146.5 10.4 92 415-506 3-100 (103)
50 KOG0495 HAT repeat protein [RN 99.9 3.3E-18 7.2E-23 162.0 32.0 304 47-378 478-785 (913)
51 KOG4162 Predicted calmodulin-b 99.9 2.5E-19 5.4E-24 173.1 25.0 321 33-381 463-789 (799)
52 PF13429 TPR_15: Tetratricopep 99.8 8.6E-21 1.9E-25 176.7 12.7 258 77-398 5-266 (280)
53 PRK12370 invasion protein regu 99.8 9.5E-19 2.1E-23 177.7 28.1 238 84-374 260-501 (553)
54 TIGR00540 hemY_coli hemY prote 99.8 4.8E-19 1E-23 173.4 24.6 288 32-341 102-399 (409)
55 PRK11189 lipoprotein NlpI; Pro 99.8 1.2E-18 2.5E-23 162.4 25.2 210 160-392 67-283 (296)
56 KOG1129 TPR repeat-containing 99.8 1.7E-19 3.7E-24 157.0 17.1 266 90-383 187-466 (478)
57 COG3118 Thioredoxin domain-con 99.8 1.4E-20 3E-25 163.3 9.1 104 410-513 25-132 (304)
58 cd03065 PDI_b_Calsequestrin_N 99.8 5E-20 1.1E-24 142.9 10.9 100 410-511 11-119 (120)
59 KOG0550 Molecular chaperone (D 99.8 3.8E-19 8.2E-24 159.8 17.9 280 32-344 67-353 (486)
60 KOG1156 N-terminal acetyltrans 99.8 8.9E-18 1.9E-22 159.4 27.5 347 37-396 30-455 (700)
61 KOG2003 TPR repeat-containing 99.8 7.1E-18 1.5E-22 153.2 25.4 299 45-370 416-717 (840)
62 COG3063 PilF Tfp pilus assembl 99.8 2.3E-18 5E-23 143.5 20.3 211 47-269 34-244 (250)
63 KOG1129 TPR repeat-containing 99.8 1.4E-19 3E-24 157.6 13.6 250 82-356 223-473 (478)
64 cd02985 TRX_CDSP32 TRX family, 99.8 7E-20 1.5E-24 141.2 10.4 93 417-509 4-101 (103)
65 cd02965 HyaE HyaE family; HyaE 99.8 9.5E-20 2.1E-24 137.3 10.6 91 415-505 16-110 (111)
66 cd02948 TRX_NDPK TRX domain, T 99.8 1.2E-19 2.6E-24 139.8 11.4 97 413-510 4-102 (102)
67 PRK10747 putative protoheme IX 99.8 2E-17 4.4E-22 161.0 29.6 271 48-342 117-391 (398)
68 COG2956 Predicted N-acetylgluc 99.8 4.6E-17 1E-21 142.0 27.0 279 86-382 39-318 (389)
69 COG3063 PilF Tfp pilus assembl 99.8 1.2E-17 2.7E-22 139.1 22.5 211 157-384 35-245 (250)
70 PLN00410 U5 snRNP protein, DIM 99.8 8.6E-20 1.9E-24 144.5 9.2 104 412-515 7-124 (142)
71 KOG4162 Predicted calmodulin-b 99.8 4.5E-17 9.8E-22 157.7 29.0 345 46-398 321-772 (799)
72 TIGR02521 type_IV_pilW type IV 99.8 5.3E-18 1.2E-22 154.2 21.6 207 45-263 28-234 (234)
73 PLN02789 farnesyltranstransfer 99.8 4.6E-17 1E-21 150.9 27.7 250 42-383 31-310 (320)
74 TIGR02521 type_IV_pilW type IV 99.8 1.4E-17 3E-22 151.5 24.1 202 157-377 31-234 (234)
75 PLN03077 Protein ECB2; Provisi 99.8 1.7E-16 3.8E-21 171.0 36.2 400 47-490 322-817 (857)
76 KOG1174 Anaphase-promoting com 99.8 1E-17 2.3E-22 150.4 21.9 289 40-355 224-514 (564)
77 KOG1840 Kinesin light chain [C 99.8 1.1E-17 2.3E-22 161.6 22.6 249 43-374 194-478 (508)
78 cd02989 Phd_like_TxnDC9 Phosdu 99.8 4.7E-19 1E-23 138.3 10.6 91 408-498 4-94 (113)
79 cd03006 PDI_a_EFP1_N PDIa fami 99.8 4.5E-19 9.7E-24 137.0 10.2 96 410-506 11-112 (113)
80 KOG0908 Thioredoxin-like prote 99.8 3.2E-19 6.8E-24 148.9 9.9 109 410-518 3-113 (288)
81 KOG1127 TPR repeat-containing 99.8 3.9E-17 8.5E-22 161.6 24.7 322 61-395 471-899 (1238)
82 PLN03081 pentatricopeptide (PP 99.8 1.9E-16 4.1E-21 166.6 30.6 296 47-375 258-557 (697)
83 PF00085 Thioredoxin: Thioredo 99.8 1.9E-18 4E-23 134.8 11.4 97 414-510 4-103 (103)
84 KOG1125 TPR repeat-containing 99.8 1.6E-18 3.5E-23 162.7 12.4 257 24-367 295-563 (579)
85 COG2956 Predicted N-acetylgluc 99.8 1.6E-15 3.4E-20 132.5 29.0 269 52-346 39-316 (389)
86 cd02963 TRX_DnaJ TRX domain, D 99.8 2.6E-18 5.5E-23 134.4 10.8 86 425-510 23-111 (111)
87 cd05804 StaR_like StaR_like; a 99.8 4.7E-16 1E-20 150.9 29.2 314 44-376 2-337 (355)
88 PRK09381 trxA thioredoxin; Pro 99.8 3.8E-18 8.3E-23 133.9 11.8 104 408-511 3-108 (109)
89 PLN03218 maturation of RBCL 1; 99.8 4.4E-15 9.6E-20 158.2 38.6 310 47-376 436-784 (1060)
90 cd02986 DLP Dim1 family, Dim1- 99.8 1.8E-18 3.9E-23 129.9 9.2 86 425-510 13-110 (114)
91 PLN02789 farnesyltranstransfer 99.8 3.5E-17 7.6E-22 151.7 19.7 207 167-392 47-267 (320)
92 cd02956 ybbN ybbN protein fami 99.8 2.7E-18 5.8E-23 131.5 10.2 83 426-508 12-96 (96)
93 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.4E-18 3E-23 134.2 8.7 92 415-506 7-100 (101)
94 PLN03218 maturation of RBCL 1; 99.8 3.6E-15 7.8E-20 158.8 37.1 300 48-379 507-820 (1060)
95 KOG1156 N-terminal acetyltrans 99.8 1.4E-15 3.1E-20 144.6 29.8 338 32-376 59-469 (700)
96 cd02999 PDI_a_ERp44_like PDIa 99.8 2.1E-18 4.5E-23 131.6 8.2 82 425-507 17-100 (100)
97 PRK10996 thioredoxin 2; Provis 99.8 5.7E-18 1.2E-22 137.8 11.2 97 415-511 41-139 (139)
98 cd02987 Phd_like_Phd Phosducin 99.8 1.9E-17 4.2E-22 139.3 14.1 102 407-509 61-173 (175)
99 cd02957 Phd_like Phosducin (Ph 99.8 4E-18 8.6E-23 134.0 9.3 89 408-498 4-95 (113)
100 PTZ00051 thioredoxin; Provisio 99.8 6E-18 1.3E-22 130.2 9.9 96 410-505 2-97 (98)
101 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 5.4E-18 1.2E-22 131.9 9.3 92 416-507 8-104 (104)
102 PRK15359 type III secretion sy 99.7 6.6E-17 1.4E-21 132.9 16.0 130 251-395 12-141 (144)
103 cd02950 TxlA TRX-like protein 99.7 1.1E-17 2.3E-22 136.4 10.8 104 417-520 11-119 (142)
104 KOG0553 TPR repeat-containing 99.7 3.3E-17 7.1E-22 142.5 13.7 122 276-397 79-200 (304)
105 cd02984 TRX_PICOT TRX domain, 99.7 1.6E-17 3.4E-22 127.6 9.9 92 417-508 3-97 (97)
106 cd02996 PDI_a_ERp44 PDIa famil 99.7 4E-17 8.6E-22 127.7 9.5 93 415-507 7-108 (108)
107 PLN03077 Protein ECB2; Provisi 99.7 2.7E-14 5.8E-19 154.1 34.4 309 46-380 251-623 (857)
108 cd02975 PfPDO_like_N Pyrococcu 99.7 5.8E-17 1.3E-21 126.6 9.7 94 419-512 15-111 (113)
109 cd02994 PDI_a_TMX PDIa family, 99.7 6.8E-17 1.5E-21 124.9 9.9 91 416-509 8-101 (101)
110 cd02962 TMX2 TMX2 family; comp 99.7 8.8E-17 1.9E-21 130.8 10.7 89 409-498 29-127 (152)
111 cd02949 TRX_NTR TRX domain, no 99.7 1.3E-16 2.8E-21 121.8 10.2 86 423-508 10-97 (97)
112 KOG2376 Signal recognition par 99.7 5.5E-13 1.2E-17 126.0 35.8 357 33-405 31-517 (652)
113 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.2E-16 2.6E-21 124.0 9.0 91 416-507 7-102 (102)
114 cd02953 DsbDgamma DsbD gamma f 99.7 6E-17 1.3E-21 125.8 6.8 92 417-508 2-104 (104)
115 KOG1127 TPR repeat-containing 99.7 2.8E-15 6.2E-20 148.7 19.5 315 50-378 564-916 (1238)
116 PTZ00443 Thioredoxin domain-co 99.7 2.3E-16 5E-21 137.0 10.3 102 410-512 32-140 (224)
117 cd02988 Phd_like_VIAF Phosduci 99.7 1.1E-15 2.4E-20 130.3 14.1 100 407-509 81-190 (192)
118 PTZ00062 glutaredoxin; Provisi 99.7 2.4E-16 5.2E-21 134.3 9.8 93 414-514 4-97 (204)
119 TIGR03302 OM_YfiO outer membra 99.7 5.9E-15 1.3E-19 134.0 18.8 193 42-264 27-235 (235)
120 TIGR01068 thioredoxin thioredo 99.7 6E-16 1.3E-20 120.1 10.4 94 417-510 4-100 (101)
121 TIGR01295 PedC_BrcD bacterioci 99.7 5.1E-16 1.1E-20 122.5 10.0 94 414-508 11-121 (122)
122 TIGR03302 OM_YfiO outer membra 99.7 7.4E-15 1.6E-19 133.3 18.7 177 190-378 31-235 (235)
123 TIGR01126 pdi_dom protein disu 99.7 6.4E-16 1.4E-20 120.1 9.8 96 416-511 3-102 (102)
124 cd03002 PDI_a_MPD1_like PDI fa 99.7 6E-16 1.3E-20 121.6 9.5 93 416-508 7-109 (109)
125 KOG1130 Predicted G-alpha GTPa 99.7 2.2E-15 4.7E-20 135.7 14.0 325 49-395 18-370 (639)
126 cd02997 PDI_a_PDIR PDIa family 99.6 9E-16 2E-20 119.7 9.7 92 416-507 7-104 (104)
127 cd03000 PDI_a_TMX3 PDIa family 99.6 8E-16 1.7E-20 119.3 9.2 92 417-510 7-103 (104)
128 PF12569 NARP1: NMDA receptor- 99.6 4.3E-13 9.3E-18 131.7 30.3 306 47-376 3-335 (517)
129 cd03001 PDI_a_P5 PDIa family, 99.6 1.2E-15 2.6E-20 118.6 10.1 92 416-507 7-102 (103)
130 PRK15359 type III secretion sy 99.6 3.9E-15 8.4E-20 122.4 13.3 127 212-359 13-139 (144)
131 KOG1840 Kinesin light chain [C 99.6 9E-14 1.9E-18 134.7 24.3 239 111-398 194-468 (508)
132 PRK10370 formate-dependent nit 99.6 1.8E-14 3.9E-19 124.9 17.3 130 245-386 52-184 (198)
133 TIGR02552 LcrH_SycD type III s 99.6 2.1E-14 4.6E-19 118.0 15.9 129 253-393 4-132 (135)
134 PRK14720 transcript cleavage f 99.6 1.6E-13 3.5E-18 140.5 24.5 73 318-393 229-304 (906)
135 PRK15363 pathogenicity island 99.6 5.9E-14 1.3E-18 112.4 15.4 114 281-394 38-151 (157)
136 KOG1915 Cell cycle control pro 99.6 1.4E-11 3.1E-16 113.4 32.2 354 38-397 63-488 (677)
137 KOG0190 Protein disulfide isom 99.6 3.2E-15 7E-20 141.7 8.6 106 413-518 29-139 (493)
138 KOG3785 Uncharacterized conser 99.6 1E-12 2.2E-17 116.5 23.1 169 58-227 32-220 (557)
139 COG3071 HemY Uncharacterized e 99.6 1.6E-11 3.5E-16 111.2 31.1 296 50-375 86-390 (400)
140 cd02947 TRX_family TRX family; 99.6 1.6E-14 3.4E-19 110.2 10.4 90 419-508 3-93 (93)
141 cd02951 SoxW SoxW family; SoxW 99.6 6.5E-15 1.4E-19 118.6 8.2 99 417-515 4-123 (125)
142 KOG3060 Uncharacterized conser 99.6 1.1E-12 2.5E-17 111.1 21.7 206 171-394 26-239 (289)
143 cd02961 PDI_a_family Protein D 99.6 7.8E-15 1.7E-19 113.9 8.0 92 416-507 5-101 (101)
144 cd05804 StaR_like StaR_like; a 99.6 2.1E-12 4.5E-17 125.4 26.5 277 46-342 41-337 (355)
145 PF04733 Coatomer_E: Coatomer 99.6 3.2E-13 7E-18 123.9 19.4 263 56-385 9-275 (290)
146 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.4E-14 3.1E-19 112.9 9.0 91 416-507 7-104 (104)
147 PRK14720 transcript cleavage f 99.6 2.7E-12 6E-17 131.6 27.0 237 42-324 25-269 (906)
148 cd02998 PDI_a_ERp38 PDIa famil 99.5 2.4E-14 5.1E-19 111.9 9.3 91 417-507 8-105 (105)
149 cd02952 TRP14_like Human TRX-r 99.5 1.5E-14 3.2E-19 111.9 7.5 95 413-507 6-118 (119)
150 KOG1915 Cell cycle control pro 99.5 2.3E-11 4.9E-16 112.1 28.5 349 33-384 92-544 (677)
151 PRK04841 transcriptional regul 99.5 1.4E-11 3.1E-16 134.8 32.3 329 47-382 408-767 (903)
152 cd02993 PDI_a_APS_reductase PD 99.5 3.9E-14 8.4E-19 110.6 8.4 91 417-507 9-109 (109)
153 KOG0553 TPR repeat-containing 99.5 1.6E-13 3.6E-18 119.7 12.1 107 44-150 77-184 (304)
154 PLN03088 SGT1, suppressor of 99.5 4.3E-13 9.3E-18 127.9 16.2 116 281-396 5-120 (356)
155 PRK15363 pathogenicity island 99.5 2.9E-13 6.4E-18 108.4 12.5 103 42-144 28-131 (157)
156 cd03007 PDI_a_ERp29_N PDIa fam 99.5 5.3E-14 1.2E-18 107.6 7.8 93 415-510 7-115 (116)
157 COG5010 TadD Flp pilus assembl 99.5 3.2E-12 6.9E-17 109.7 19.1 175 176-370 52-226 (257)
158 TIGR00411 redox_disulf_1 small 99.5 1.6E-13 3.5E-18 101.5 9.9 78 429-510 2-81 (82)
159 PRK10370 formate-dependent nit 99.5 2.3E-12 4.9E-17 111.9 18.6 155 162-346 21-178 (198)
160 PF12569 NARP1: NMDA receptor- 99.5 1E-11 2.3E-16 122.1 25.4 271 27-307 17-334 (517)
161 PRK15179 Vi polysaccharide bio 99.5 3.3E-12 7.2E-17 130.3 22.6 133 235-379 89-221 (694)
162 KOG1128 Uncharacterized conser 99.5 1.8E-12 4E-17 125.5 18.8 223 115-378 397-619 (777)
163 COG5010 TadD Flp pilus assembl 99.5 3.6E-12 7.7E-17 109.4 17.9 169 209-396 50-218 (257)
164 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.4E-15 105.8 27.6 276 42-341 112-390 (400)
165 PHA02125 thioredoxin-like prot 99.5 2.4E-13 5.2E-18 97.6 8.6 70 430-507 2-73 (75)
166 PRK15179 Vi polysaccharide bio 99.5 1E-11 2.2E-16 126.8 22.5 151 181-350 76-226 (694)
167 cd02982 PDI_b'_family Protein 99.5 2.9E-13 6.2E-18 105.1 8.3 85 426-510 12-102 (103)
168 PRK11509 hydrogenase-1 operon 99.4 1.2E-12 2.5E-17 102.2 11.3 99 417-515 25-128 (132)
169 cd02992 PDI_a_QSOX PDIa family 99.4 2.2E-13 4.7E-18 106.8 7.4 75 416-490 8-89 (114)
170 KOG0543 FKBP-type peptidyl-pro 99.4 2.2E-12 4.9E-17 117.6 14.9 122 278-399 208-344 (397)
171 KOG3785 Uncharacterized conser 99.4 2.8E-11 6.1E-16 107.5 21.1 312 49-370 58-452 (557)
172 KOG3060 Uncharacterized conser 99.4 6.1E-11 1.3E-15 100.8 22.0 177 166-361 61-240 (289)
173 TIGR02187 GlrX_arch Glutaredox 99.4 5.2E-13 1.1E-17 118.0 9.9 87 426-512 19-112 (215)
174 TIGR02552 LcrH_SycD type III s 99.4 1.3E-12 2.8E-17 107.3 11.6 109 36-144 5-113 (135)
175 KOG4277 Uncharacterized conser 99.4 2.2E-13 4.7E-18 117.3 7.0 89 424-512 41-133 (468)
176 TIGR00412 redox_disulf_2 small 99.4 8.3E-13 1.8E-17 94.8 8.5 72 430-508 2-76 (76)
177 KOG4340 Uncharacterized conser 99.4 4.3E-11 9.4E-16 103.9 20.2 294 57-368 19-332 (459)
178 KOG2376 Signal recognition par 99.4 1.1E-09 2.3E-14 104.2 30.8 298 52-368 83-513 (652)
179 PTZ00102 disulphide isomerase; 99.4 8.6E-13 1.9E-17 133.1 10.6 99 415-514 38-141 (477)
180 TIGR00424 APS_reduc 5'-adenyly 99.4 1.1E-12 2.3E-17 126.0 10.2 101 409-510 352-462 (463)
181 TIGR01130 ER_PDI_fam protein d 99.4 1.2E-12 2.5E-17 132.0 10.9 100 415-514 7-112 (462)
182 KOG0912 Thiol-disulfide isomer 99.4 3.7E-13 8.1E-18 116.3 5.9 98 417-514 4-109 (375)
183 PLN02309 5'-adenylylsulfate re 99.4 2.1E-12 4.6E-17 124.0 10.4 101 409-510 346-456 (457)
184 KOG1128 Uncharacterized conser 99.4 1.9E-11 4.1E-16 118.6 16.7 133 192-342 485-617 (777)
185 PTZ00102 disulphide isomerase; 99.4 2.6E-12 5.5E-17 129.7 10.9 103 410-513 359-467 (477)
186 TIGR02187 GlrX_arch Glutaredox 99.4 3.6E-12 7.8E-17 112.7 10.3 80 427-509 134-214 (215)
187 cd02959 ERp19 Endoplasmic reti 99.4 2.8E-13 6E-18 106.3 2.8 94 417-510 10-112 (117)
188 KOG1130 Predicted G-alpha GTPa 99.3 3.3E-12 7.2E-17 115.5 9.1 263 88-377 23-306 (639)
189 COG4783 Putative Zn-dependent 99.3 8.5E-11 1.8E-15 109.5 18.3 150 232-393 306-455 (484)
190 KOG4340 Uncharacterized conser 99.3 4E-11 8.6E-16 104.1 15.0 287 26-333 22-331 (459)
191 TIGR02738 TrbB type-F conjugat 99.3 7.7E-12 1.7E-16 102.4 9.7 86 424-510 48-152 (153)
192 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 1E-11 2.3E-16 91.6 9.0 74 427-504 13-87 (89)
193 TIGR02795 tol_pal_ybgF tol-pal 99.3 4.6E-11 1E-15 95.7 13.5 106 281-386 5-116 (119)
194 KOG4234 TPR repeat-containing 99.3 4.7E-11 1E-15 97.5 13.2 119 276-394 93-216 (271)
195 cd02973 TRX_GRX_like Thioredox 99.3 9.6E-12 2.1E-16 87.6 8.0 62 430-493 3-64 (67)
196 TIGR02740 TraF-like TraF-like 99.3 2.7E-10 5.8E-15 103.3 19.3 86 426-512 166-265 (271)
197 PRK00293 dipZ thiol:disulfide 99.3 4.6E-12 1E-16 127.7 8.6 101 410-510 454-569 (571)
198 PLN03088 SGT1, suppressor of 99.3 5.1E-11 1.1E-15 113.7 15.2 113 236-360 6-118 (356)
199 PF04733 Coatomer_E: Coatomer 99.3 1.1E-10 2.4E-15 107.3 16.7 240 90-396 9-251 (290)
200 PRK04841 transcriptional regul 99.3 2.7E-09 5.9E-14 117.0 30.2 316 49-376 342-721 (903)
201 PF13414 TPR_11: TPR repeat; P 99.3 1.3E-11 2.8E-16 87.7 7.9 67 311-377 2-69 (69)
202 PRK10866 outer membrane biogen 99.3 1.8E-09 4E-14 96.8 23.5 83 46-128 30-118 (243)
203 COG4783 Putative Zn-dependent 99.3 4.4E-10 9.6E-15 104.9 19.4 156 191-381 305-461 (484)
204 KOG2047 mRNA splicing factor [ 99.3 3.7E-08 8E-13 94.8 32.6 335 39-388 340-702 (835)
205 PF13414 TPR_11: TPR repeat; P 99.3 1.4E-11 3.1E-16 87.5 7.7 68 46-113 1-69 (69)
206 KOG1672 ATP binding protein [P 99.3 5.8E-11 1.3E-15 96.0 11.8 95 404-498 62-156 (211)
207 PRK14018 trifunctional thiored 99.3 1.5E-11 3.3E-16 119.7 10.3 86 423-508 53-170 (521)
208 PF13098 Thioredoxin_2: Thiore 99.3 7.1E-12 1.5E-16 98.9 6.6 84 424-507 3-112 (112)
209 PRK15331 chaperone protein Sic 99.3 1.2E-10 2.7E-15 93.7 13.6 114 281-395 40-153 (165)
210 KOG4648 Uncharacterized conser 99.3 5.4E-12 1.2E-16 111.5 5.7 248 51-392 100-347 (536)
211 PF13525 YfiO: Outer membrane 99.2 2E-09 4.3E-14 94.4 21.0 83 46-128 3-91 (203)
212 PRK15412 thiol:disulfide inter 99.2 3.4E-11 7.3E-16 103.7 9.4 86 425-512 67-177 (185)
213 KOG0190 Protein disulfide isom 99.2 1.5E-11 3.2E-16 117.2 7.3 100 410-512 368-474 (493)
214 cd02955 SSP411 TRX domain, SSP 99.2 1.7E-11 3.6E-16 96.3 6.3 82 417-498 6-100 (124)
215 COG4235 Cytochrome c biogenesi 99.2 7.6E-10 1.7E-14 97.9 16.9 133 248-392 138-273 (287)
216 PRK02603 photosystem I assembl 99.2 1.7E-10 3.6E-15 98.6 12.2 121 43-190 30-153 (172)
217 PF13525 YfiO: Outer membrane 99.2 6.8E-10 1.5E-14 97.3 16.1 167 188-366 1-198 (203)
218 PRK10866 outer membrane biogen 99.2 2E-09 4.3E-14 96.6 19.4 171 189-371 29-237 (243)
219 cd00189 TPR Tetratricopeptide 99.2 2.4E-10 5.2E-15 87.4 11.9 98 281-378 3-100 (100)
220 PF14938 SNAP: Soluble NSF att 99.2 7.4E-10 1.6E-14 102.6 17.1 165 172-377 89-268 (282)
221 KOG4648 Uncharacterized conser 99.2 1.1E-10 2.4E-15 103.3 10.6 114 278-391 97-210 (536)
222 TIGR00385 dsbE periplasmic pro 99.2 5.8E-11 1.3E-15 101.2 8.5 86 424-511 61-171 (173)
223 KOG3081 Vesicle coat complex C 99.2 2.9E-08 6.4E-13 85.4 24.5 166 193-383 109-279 (299)
224 cd03010 TlpA_like_DsbE TlpA-li 99.2 6.1E-11 1.3E-15 95.8 7.8 78 425-503 24-126 (127)
225 PF12895 Apc3: Anaphase-promot 99.2 5E-11 1.1E-15 88.2 6.4 82 290-372 1-84 (84)
226 CHL00033 ycf3 photosystem I as 99.2 1.2E-09 2.6E-14 93.0 15.8 113 47-193 34-156 (168)
227 TIGR01130 ER_PDI_fam protein d 99.2 8.9E-11 1.9E-15 118.4 10.0 104 410-516 348-459 (462)
228 PF13432 TPR_16: Tetratricopep 99.2 1.2E-10 2.6E-15 81.5 7.5 64 317-380 2-65 (65)
229 PRK02603 photosystem I assembl 99.2 1.5E-09 3.3E-14 92.7 15.5 99 281-379 38-153 (172)
230 PF13432 TPR_16: Tetratricopep 99.2 1.5E-10 3.3E-15 80.9 7.5 65 52-116 1-65 (65)
231 cd03008 TryX_like_RdCVF Trypar 99.1 1.3E-10 2.9E-15 93.8 7.8 70 425-494 24-128 (146)
232 CHL00033 ycf3 photosystem I as 99.1 1.2E-09 2.5E-14 93.1 14.1 125 246-380 13-154 (168)
233 PF12895 Apc3: Anaphase-promot 99.1 5.7E-11 1.2E-15 87.9 5.2 81 60-141 1-83 (84)
234 PRK15331 chaperone protein Sic 99.1 5.5E-10 1.2E-14 90.0 10.7 107 41-147 30-136 (165)
235 KOG2047 mRNA splicing factor [ 99.1 9.1E-08 2E-12 92.2 27.1 203 171-377 361-581 (835)
236 PF14938 SNAP: Soluble NSF att 99.1 1.1E-09 2.5E-14 101.4 14.4 177 199-382 42-232 (282)
237 TIGR02795 tol_pal_ybgF tol-pal 99.1 5.7E-10 1.2E-14 89.3 10.8 97 48-144 2-104 (119)
238 PRK10803 tol-pal system protei 99.1 1.8E-09 4E-14 97.3 15.1 105 283-387 147-258 (263)
239 KOG0543 FKBP-type peptidyl-pro 99.1 3E-09 6.4E-14 97.6 16.1 138 239-377 215-357 (397)
240 PRK13728 conjugal transfer pro 99.1 4.1E-10 9E-15 93.6 9.4 83 430-513 73-173 (181)
241 KOG1941 Acetylcholine receptor 99.1 2.6E-09 5.7E-14 95.5 14.8 288 48-376 6-321 (518)
242 PF09976 TPR_21: Tetratricopep 99.1 6.6E-09 1.4E-13 85.9 15.8 123 241-373 20-145 (145)
243 PF09976 TPR_21: Tetratricopep 99.1 6.8E-09 1.5E-13 85.8 15.8 95 48-142 11-111 (145)
244 PRK10153 DNA-binding transcrip 99.1 6.5E-09 1.4E-13 103.3 17.4 135 235-382 342-489 (517)
245 cd00189 TPR Tetratricopeptide 99.1 1.1E-09 2.3E-14 83.7 9.5 95 50-144 2-96 (100)
246 cd03009 TryX_like_TryX_NRX Try 99.1 4.2E-10 9.2E-15 91.4 7.3 70 425-494 17-115 (131)
247 cd02964 TryX_like_family Trypa 99.1 4.4E-10 9.5E-15 91.3 7.3 71 425-495 16-116 (132)
248 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 9.7E-10 2.1E-14 88.3 8.6 82 425-506 19-121 (123)
249 COG4235 Cytochrome c biogenesi 99.0 1.3E-08 2.9E-13 90.2 16.1 129 63-230 137-265 (287)
250 KOG0191 Thioredoxin/protein di 99.0 6E-10 1.3E-14 108.0 8.6 100 415-514 36-137 (383)
251 PF13905 Thioredoxin_8: Thiore 99.0 8.3E-10 1.8E-14 84.0 7.5 66 426-491 1-95 (95)
252 PRK03147 thiol-disulfide oxido 99.0 1.4E-09 3.1E-14 93.3 9.6 86 425-510 60-171 (173)
253 PLN02919 haloacid dehalogenase 99.0 1.1E-09 2.4E-14 118.4 10.1 88 425-512 419-537 (1057)
254 COG4785 NlpI Lipoprotein NlpI, 99.0 2.5E-08 5.4E-13 83.0 15.2 196 82-343 65-268 (297)
255 PRK11906 transcriptional regul 99.0 9.8E-09 2.1E-13 96.7 13.7 144 236-382 259-408 (458)
256 COG4785 NlpI Lipoprotein NlpI, 99.0 9.2E-08 2E-12 79.7 16.9 203 44-262 61-267 (297)
257 cd02966 TlpA_like_family TlpA- 98.9 2.9E-09 6.2E-14 84.7 8.0 72 426-497 19-116 (116)
258 PF13512 TPR_18: Tetratricopep 98.9 3.5E-08 7.6E-13 78.0 13.6 105 281-385 13-138 (142)
259 PF14559 TPR_19: Tetratricopep 98.9 2.4E-09 5.2E-14 75.7 6.6 68 58-125 1-68 (68)
260 COG1729 Uncharacterized protei 98.9 2.4E-08 5.3E-13 87.4 13.9 104 282-385 145-254 (262)
261 cd02958 UAS UAS family; UAS is 98.9 5.5E-09 1.2E-13 82.3 8.9 92 420-511 11-111 (114)
262 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 2.9E-08 6.3E-13 94.2 15.2 122 239-375 176-297 (395)
263 PRK10803 tol-pal system protei 98.9 9.3E-09 2E-13 92.8 11.4 104 46-149 140-251 (263)
264 COG4105 ComL DNA uptake lipopr 98.9 1.4E-07 2.9E-12 81.9 17.2 181 188-380 30-238 (254)
265 KOG1070 rRNA processing protei 98.9 3.5E-07 7.5E-12 95.6 22.9 225 96-342 1438-1664(1710)
266 COG0457 NrfG FOG: TPR repeat [ 98.9 4.7E-06 1E-10 75.7 29.1 227 95-378 36-268 (291)
267 PF13371 TPR_9: Tetratricopept 98.9 9E-09 1.9E-13 73.9 8.5 67 319-385 2-68 (73)
268 PF14559 TPR_19: Tetratricopep 98.9 4.8E-09 1E-13 74.1 6.9 65 323-387 2-66 (68)
269 PF12688 TPR_5: Tetratrico pep 98.9 6.2E-08 1.3E-12 75.5 13.5 94 49-142 2-101 (120)
270 KOG4234 TPR repeat-containing 98.9 3.4E-08 7.3E-13 81.1 12.1 108 239-354 102-210 (271)
271 COG3898 Uncharacterized membra 98.9 2.4E-06 5.2E-11 77.8 24.9 269 48-380 120-396 (531)
272 cd03012 TlpA_like_DipZ_like Tl 98.9 1E-08 2.2E-13 82.5 8.6 74 425-498 22-125 (126)
273 COG4232 Thiol:disulfide interc 98.9 3.2E-09 6.8E-14 102.5 6.5 101 411-511 457-568 (569)
274 TIGR01626 ytfJ_HI0045 conserve 98.9 9.6E-09 2.1E-13 86.2 8.6 81 426-508 59-177 (184)
275 PRK11906 transcriptional regul 98.9 2.4E-07 5.2E-12 87.5 18.7 168 196-376 259-437 (458)
276 PF13371 TPR_9: Tetratricopept 98.9 1.5E-08 3.4E-13 72.6 8.3 70 285-354 2-71 (73)
277 PF02114 Phosducin: Phosducin; 98.9 3.2E-08 7E-13 88.7 12.0 102 408-510 125-237 (265)
278 KOG4642 Chaperone-dependent E3 98.9 2E-08 4.4E-13 84.8 9.7 112 279-390 11-127 (284)
279 COG4105 ComL DNA uptake lipopr 98.8 3.4E-06 7.3E-11 73.4 23.6 197 47-311 33-237 (254)
280 TIGR02196 GlrX_YruB Glutaredox 98.8 1.2E-08 2.7E-13 73.5 7.6 69 430-508 2-74 (74)
281 COG0457 NrfG FOG: TPR repeat [ 98.8 9.2E-06 2E-10 73.8 28.8 237 50-344 24-268 (291)
282 PF06552 TOM20_plant: Plant sp 98.8 3.7E-08 8E-13 80.2 10.7 97 294-390 7-124 (186)
283 PRK10153 DNA-binding transcrip 98.8 9.4E-08 2E-12 95.2 15.9 145 74-226 329-487 (517)
284 KOG0914 Thioredoxin-like prote 98.8 3.1E-09 6.8E-14 87.6 4.5 87 410-496 126-222 (265)
285 KOG3081 Vesicle coat complex C 98.8 1.8E-06 4E-11 74.7 21.3 266 49-347 10-277 (299)
286 KOG4555 TPR repeat-containing 98.8 1.4E-07 3.1E-12 71.7 12.6 96 283-378 48-147 (175)
287 KOG2053 Mitochondrial inherita 98.8 5.6E-06 1.2E-10 83.3 27.2 291 58-373 19-335 (932)
288 PF12688 TPR_5: Tetratrico pep 98.8 1.4E-07 3E-12 73.6 13.0 94 281-374 4-103 (120)
289 KOG1731 FAD-dependent sulfhydr 98.8 2.5E-09 5.5E-14 101.7 3.9 98 414-511 44-153 (606)
290 cd02967 mauD Methylamine utili 98.8 1.8E-08 3.9E-13 79.7 8.1 70 425-494 20-111 (114)
291 TIGR02661 MauD methylamine deh 98.8 2.4E-08 5.3E-13 86.2 8.9 88 425-513 73-181 (189)
292 PF08534 Redoxin: Redoxin; In 98.8 2.1E-08 4.5E-13 83.3 7.9 82 425-506 27-145 (146)
293 PTZ00056 glutathione peroxidas 98.8 1.8E-08 3.8E-13 87.5 7.3 89 425-513 38-180 (199)
294 KOG0191 Thioredoxin/protein di 98.8 2.9E-08 6.3E-13 96.3 9.5 105 410-514 146-255 (383)
295 KOG0376 Serine-threonine phosp 98.8 2.3E-08 5E-13 93.6 8.0 117 281-397 7-123 (476)
296 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 4.2E-08 9E-13 92.4 9.5 68 308-375 71-141 (453)
297 cd02960 AGR Anterior Gradient 98.7 1.2E-08 2.6E-13 79.8 4.6 78 419-498 16-99 (130)
298 KOG1070 rRNA processing protei 98.7 2E-06 4.4E-11 90.1 21.7 236 64-324 1440-1682(1710)
299 COG3898 Uncharacterized membra 98.7 2.2E-05 4.9E-10 71.7 25.7 269 88-381 90-364 (531)
300 KOG1941 Acetylcholine receptor 98.7 4.5E-07 9.7E-12 81.6 14.8 173 48-220 83-274 (518)
301 KOG2471 TPR repeat-containing 98.7 2.7E-06 5.9E-11 79.6 20.1 155 49-204 207-381 (696)
302 PLN02399 phospholipid hydroper 98.7 6.6E-08 1.4E-12 85.1 9.3 88 425-512 98-235 (236)
303 KOG3617 WD40 and TPR repeat-co 98.7 2.6E-05 5.6E-10 77.8 27.6 306 48-373 757-1172(1416)
304 COG2143 Thioredoxin-related pr 98.7 1.3E-07 2.9E-12 73.8 9.4 93 418-510 34-148 (182)
305 COG1729 Uncharacterized protei 98.7 1.4E-07 3.1E-12 82.7 10.7 98 47-144 140-243 (262)
306 KOG0545 Aryl-hydrocarbon recep 98.7 5.5E-07 1.2E-11 76.5 13.6 103 281-383 181-301 (329)
307 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.8E-07 8.3E-12 86.7 14.2 122 197-339 174-295 (395)
308 PF14595 Thioredoxin_9: Thiore 98.7 2.4E-08 5.3E-13 79.2 5.1 84 426-510 41-128 (129)
309 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.4E-07 3.1E-12 88.8 10.9 73 39-111 66-141 (453)
310 smart00594 UAS UAS domain. 98.7 1.1E-07 2.4E-12 75.5 8.7 89 419-507 20-121 (122)
311 KOG4555 TPR repeat-containing 98.7 4.7E-07 1E-11 68.9 11.0 95 50-144 45-143 (175)
312 KOG4642 Chaperone-dependent E3 98.6 5.4E-08 1.2E-12 82.3 6.2 99 46-144 8-106 (284)
313 KOG3617 WD40 and TPR repeat-co 98.6 0.00017 3.6E-09 72.3 30.5 210 49-258 859-1171(1416)
314 PF13512 TPR_18: Tetratricopep 98.6 1.3E-06 2.8E-11 69.3 12.7 105 235-348 13-135 (142)
315 TIGR02200 GlrX_actino Glutared 98.6 1.6E-07 3.5E-12 68.1 7.2 70 430-508 2-76 (77)
316 cd02969 PRX_like1 Peroxiredoxi 98.6 4.5E-07 9.7E-12 77.4 10.9 94 425-518 24-159 (171)
317 PLN02412 probable glutathione 98.6 2.1E-07 4.6E-12 78.6 8.7 88 425-512 28-165 (167)
318 KOG2796 Uncharacterized conser 98.6 1.2E-05 2.6E-10 69.5 18.8 241 81-355 68-332 (366)
319 PF13424 TPR_12: Tetratricopep 98.6 6E-08 1.3E-12 70.6 4.5 67 309-375 2-75 (78)
320 KOG2053 Mitochondrial inherita 98.6 8E-05 1.7E-09 75.3 27.2 228 93-345 20-259 (932)
321 PF13728 TraF: F plasmid trans 98.6 5.4E-06 1.2E-10 72.5 17.0 81 426-507 120-214 (215)
322 KOG1586 Protein required for f 98.6 4.2E-06 9.1E-11 70.9 15.3 139 239-384 81-233 (288)
323 PF13192 Thioredoxin_3: Thiore 98.6 5.4E-07 1.2E-11 64.6 8.7 71 432-508 4-76 (76)
324 COG0526 TrxA Thiol-disulfide i 98.6 1.8E-07 3.8E-12 75.1 7.0 83 426-508 32-121 (127)
325 COG4700 Uncharacterized protei 98.6 1.3E-05 2.8E-10 65.5 17.2 151 203-373 67-220 (251)
326 KOG0551 Hsp90 co-chaperone CNS 98.6 6.4E-07 1.4E-11 79.7 10.5 101 281-381 84-188 (390)
327 KOG1586 Protein required for f 98.5 1.9E-05 4.1E-10 67.0 18.5 193 128-348 26-231 (288)
328 KOG2471 TPR repeat-containing 98.5 7.3E-06 1.6E-10 76.8 17.6 321 49-395 18-384 (696)
329 KOG2501 Thioredoxin, nucleored 98.5 1.7E-07 3.7E-12 74.7 5.7 69 426-494 33-131 (157)
330 PF13424 TPR_12: Tetratricopep 98.5 1.8E-07 3.9E-12 68.0 5.5 67 45-111 2-75 (78)
331 cd00340 GSH_Peroxidase Glutath 98.5 3.9E-07 8.4E-12 75.9 7.1 80 426-506 22-151 (152)
332 KOG0913 Thiol-disulfide isomer 98.4 7.6E-08 1.6E-12 81.0 1.8 93 415-510 30-125 (248)
333 PF13899 Thioredoxin_7: Thiore 98.4 1.9E-07 4.1E-12 68.4 3.7 68 419-487 10-81 (82)
334 KOG4507 Uncharacterized conser 98.4 2E-05 4.3E-10 75.6 17.8 104 288-391 617-721 (886)
335 KOG0911 Glutaredoxin-related p 98.4 1.6E-07 3.4E-12 78.9 3.5 90 424-513 15-104 (227)
336 TIGR02540 gpx7 putative glutat 98.4 1.3E-06 2.8E-11 72.9 8.9 86 425-510 21-152 (153)
337 KOG3414 Component of the U4/U6 98.4 2.3E-06 5E-11 64.1 8.3 102 413-514 8-123 (142)
338 cd03017 PRX_BCP Peroxiredoxin 98.4 2E-06 4.4E-11 70.8 8.5 82 426-507 23-139 (140)
339 COG4700 Uncharacterized protei 98.4 3.1E-05 6.6E-10 63.4 14.7 151 171-340 70-221 (251)
340 PF06552 TOM20_plant: Plant sp 98.3 1.2E-05 2.5E-10 65.9 12.1 96 248-348 7-116 (186)
341 cd01659 TRX_superfamily Thiore 98.3 1.8E-06 4E-11 60.3 6.8 60 430-489 1-63 (69)
342 PF13428 TPR_14: Tetratricopep 98.3 1.6E-06 3.4E-11 54.6 5.3 42 313-354 2-43 (44)
343 KOG2796 Uncharacterized conser 98.3 3.6E-05 7.9E-10 66.6 14.9 243 46-321 67-332 (366)
344 TIGR02739 TraF type-F conjugat 98.3 3.9E-05 8.5E-10 68.2 15.5 88 426-514 150-251 (256)
345 KOG2300 Uncharacterized conser 98.3 0.0039 8.5E-08 59.1 31.5 354 18-376 10-475 (629)
346 KOG1914 mRNA cleavage and poly 98.3 0.0041 8.8E-08 59.9 29.1 73 38-111 10-82 (656)
347 KOG0376 Serine-threonine phosp 98.3 1.5E-06 3.3E-11 81.8 6.4 97 48-144 4-100 (476)
348 cd03014 PRX_Atyp2cys Peroxired 98.3 4.2E-06 9.1E-11 69.1 8.5 83 425-507 25-141 (143)
349 PTZ00256 glutathione peroxidas 98.2 2.5E-06 5.3E-11 73.4 6.8 87 426-512 40-182 (183)
350 cd02976 NrdH NrdH-redoxin (Nrd 98.2 4.7E-06 1E-10 59.6 7.3 68 430-507 2-73 (73)
351 PF13428 TPR_14: Tetratricopep 98.2 2.5E-06 5.3E-11 53.7 4.9 40 84-123 3-42 (44)
352 PF13431 TPR_17: Tetratricopep 98.2 1.3E-06 2.9E-11 51.0 3.1 32 335-366 2-33 (34)
353 PRK11200 grxA glutaredoxin 1; 98.2 8.4E-06 1.8E-10 60.1 8.2 75 430-511 3-83 (85)
354 KOG0551 Hsp90 co-chaperone CNS 98.2 5.5E-05 1.2E-09 67.8 14.3 103 234-344 83-185 (390)
355 PF04184 ST7: ST7 protein; In 98.2 0.00045 9.8E-09 65.9 20.6 139 239-388 266-427 (539)
356 PF07079 DUF1347: Protein of u 98.2 0.0071 1.5E-07 57.1 33.4 137 50-186 8-157 (549)
357 PF05843 Suf: Suppressor of fo 98.2 0.0001 2.2E-09 68.1 15.9 139 234-384 3-145 (280)
358 KOG1308 Hsp70-interacting prot 98.2 2.6E-06 5.7E-11 76.4 5.0 95 284-378 120-214 (377)
359 KOG3616 Selective LIM binding 98.2 0.00085 1.8E-08 66.6 22.3 151 51-218 664-850 (1636)
360 PF13431 TPR_17: Tetratricopep 98.2 2.1E-06 4.5E-11 50.2 3.0 32 71-102 2-33 (34)
361 PRK00522 tpx lipid hydroperoxi 98.1 1.2E-05 2.7E-10 67.9 8.8 72 426-497 44-149 (167)
362 TIGR02180 GRX_euk Glutaredoxin 98.1 5.9E-06 1.3E-10 61.0 6.1 60 430-492 1-65 (84)
363 KOG2300 Uncharacterized conser 98.1 0.0079 1.7E-07 57.2 27.1 330 48-386 88-525 (629)
364 KOG1585 Protein required for f 98.1 0.00043 9.3E-09 59.5 17.1 119 244-369 122-250 (308)
365 PF00578 AhpC-TSA: AhpC/TSA fa 98.1 9E-06 2E-10 65.3 6.7 70 425-494 24-124 (124)
366 PRK09437 bcp thioredoxin-depen 98.1 2.4E-05 5.1E-10 65.5 9.4 84 425-508 29-150 (154)
367 PRK13703 conjugal pilus assemb 98.1 0.00032 6.9E-09 62.1 16.5 86 426-512 143-242 (248)
368 PF06110 DUF953: Eukaryotic pr 98.1 6.8E-06 1.5E-10 63.4 5.2 81 425-508 18-118 (119)
369 PF10345 Cohesin_load: Cohesin 98.1 0.011 2.3E-07 61.6 30.3 303 65-370 38-428 (608)
370 PRK13190 putative peroxiredoxi 98.1 3.3E-05 7.1E-10 67.4 10.1 107 426-537 27-176 (202)
371 PF00515 TPR_1: Tetratricopept 98.1 7.5E-06 1.6E-10 48.2 4.2 32 347-378 2-33 (34)
372 PF02966 DIM1: Mitosis protein 98.1 3.2E-05 7E-10 59.4 8.5 97 413-510 5-116 (133)
373 PF10300 DUF3808: Protein of u 98.1 0.0038 8.2E-08 62.2 25.6 164 201-376 197-377 (468)
374 PF11009 DUF2847: Protein of u 98.0 1.7E-05 3.8E-10 59.2 6.8 92 412-503 3-104 (105)
375 TIGR02183 GRXA Glutaredoxin, G 98.0 3.5E-05 7.6E-10 56.7 8.2 75 430-511 2-82 (86)
376 KOG1585 Protein required for f 98.0 0.00018 3.8E-09 61.8 12.9 175 195-376 34-220 (308)
377 PF07719 TPR_2: Tetratricopept 98.0 1.5E-05 3.2E-10 46.9 4.9 33 347-379 2-34 (34)
378 PF13281 DUF4071: Domain of un 98.0 0.0037 8E-08 59.0 22.8 188 191-390 140-349 (374)
379 PRK10382 alkyl hydroperoxide r 98.0 4.9E-05 1.1E-09 65.0 9.7 110 426-539 31-181 (187)
380 PF00515 TPR_1: Tetratricopept 98.0 1.1E-05 2.5E-10 47.4 3.9 34 312-345 1-34 (34)
381 PF10345 Cohesin_load: Cohesin 98.0 0.031 6.8E-07 58.2 31.7 313 46-364 57-467 (608)
382 cd03015 PRX_Typ2cys Peroxiredo 98.0 5E-05 1.1E-09 64.8 9.3 85 426-510 29-156 (173)
383 KOG2610 Uncharacterized conser 98.0 0.00017 3.7E-09 64.8 12.6 160 199-373 110-274 (491)
384 cd02991 UAS_ETEA UAS family, E 98.0 3.5E-05 7.5E-10 60.1 7.5 88 423-512 14-114 (116)
385 PRK13599 putative peroxiredoxi 98.0 6.5E-05 1.4E-09 65.9 10.0 107 426-537 28-182 (215)
386 TIGR03143 AhpF_homolog putativ 98.0 3.5E-05 7.6E-10 78.8 9.7 78 426-507 475-554 (555)
387 KOG1550 Extracellular protein 98.0 0.003 6.6E-08 64.5 23.4 283 63-379 227-542 (552)
388 PRK15000 peroxidase; Provision 97.9 6.3E-05 1.4E-09 65.4 9.7 109 425-538 33-185 (200)
389 KOG0545 Aryl-hydrocarbon recep 97.9 4.1E-05 9E-10 65.5 8.0 98 47-144 177-292 (329)
390 cd03018 PRX_AhpE_like Peroxire 97.9 4.4E-05 9.5E-10 63.5 8.3 81 427-507 29-147 (149)
391 PRK10329 glutaredoxin-like pro 97.9 7E-05 1.5E-09 54.2 8.2 72 430-511 3-77 (81)
392 TIGR02194 GlrX_NrdH Glutaredox 97.9 3.8E-05 8.3E-10 54.5 6.7 67 431-506 2-71 (72)
393 cd02970 PRX_like2 Peroxiredoxi 97.9 4.1E-05 8.8E-10 63.8 8.0 71 427-497 25-148 (149)
394 PF04184 ST7: ST7 protein; In 97.9 0.00068 1.5E-08 64.7 16.6 187 167-383 178-383 (539)
395 TIGR03137 AhpC peroxiredoxin. 97.9 6.1E-05 1.3E-09 65.0 9.0 86 425-510 30-155 (187)
396 PRK10877 protein disulfide iso 97.9 2.7E-05 5.9E-10 69.3 6.9 80 425-510 106-230 (232)
397 PF07719 TPR_2: Tetratricopept 97.9 2.6E-05 5.7E-10 45.9 4.6 34 312-345 1-34 (34)
398 PF03704 BTAD: Bacterial trans 97.9 0.00052 1.1E-08 56.8 14.1 93 283-375 11-125 (146)
399 PTZ00137 2-Cys peroxiredoxin; 97.9 0.00014 3.1E-09 65.2 11.2 108 426-538 98-248 (261)
400 PF02259 FAT: FAT domain; Int 97.9 0.014 2.9E-07 56.6 26.0 300 54-378 4-341 (352)
401 PRK13191 putative peroxiredoxi 97.9 0.00014 3E-09 63.9 10.7 110 426-540 33-190 (215)
402 KOG2610 Uncharacterized conser 97.9 0.0025 5.4E-08 57.6 18.2 162 163-340 109-275 (491)
403 COG2909 MalT ATP-dependent tra 97.9 0.0082 1.8E-07 61.6 24.0 309 45-371 344-684 (894)
404 PF02259 FAT: FAT domain; Int 97.9 0.0022 4.8E-08 62.1 20.2 145 233-394 147-306 (352)
405 cd03016 PRX_1cys Peroxiredoxin 97.9 7.7E-05 1.7E-09 65.3 8.8 104 428-536 28-175 (203)
406 PRK13189 peroxiredoxin; Provis 97.9 0.00014 3E-09 64.4 10.3 99 428-531 38-178 (222)
407 PF03190 Thioredox_DsbH: Prote 97.9 2.3E-05 5.1E-10 63.9 5.0 94 416-509 27-139 (163)
408 PRK15317 alkyl hydroperoxide r 97.9 9.9E-05 2.1E-09 75.0 10.7 80 427-510 117-197 (517)
409 KOG1258 mRNA processing protei 97.8 0.037 8.1E-07 54.5 29.4 318 63-394 60-414 (577)
410 PF00462 Glutaredoxin: Glutare 97.8 8.6E-05 1.9E-09 50.5 6.8 55 430-491 1-59 (60)
411 PF10300 DUF3808: Protein of u 97.8 0.0014 3E-08 65.4 17.9 166 128-307 200-376 (468)
412 KOG3616 Selective LIM binding 97.8 0.0026 5.6E-08 63.3 19.0 234 84-372 663-908 (1636)
413 KOG1308 Hsp70-interacting prot 97.8 1E-05 2.2E-10 72.8 2.5 97 48-144 114-210 (377)
414 PF05843 Suf: Suppressor of fo 97.8 0.00061 1.3E-08 63.0 14.3 137 50-190 3-140 (280)
415 PF07449 HyaE: Hydrogenase-1 e 97.8 0.00014 3.1E-09 54.7 8.0 83 416-498 16-101 (107)
416 KOG1550 Extracellular protein 97.8 0.0035 7.7E-08 64.0 20.0 265 46-344 242-541 (552)
417 PF13281 DUF4071: Domain of un 97.8 0.0055 1.2E-07 57.8 19.4 207 63-274 121-347 (374)
418 cd03020 DsbA_DsbC_DsbG DsbA fa 97.7 6.2E-05 1.3E-09 65.8 5.7 75 426-507 77-197 (197)
419 cd02971 PRX_family Peroxiredox 97.7 0.00016 3.5E-09 59.4 7.7 74 425-498 21-129 (140)
420 cd03023 DsbA_Com1_like DsbA fa 97.7 0.00037 8E-09 58.3 9.5 37 426-462 5-41 (154)
421 PRK10606 btuE putative glutath 97.6 0.00018 3.8E-09 61.2 7.1 41 425-466 24-66 (183)
422 cd02968 SCO SCO (an acronym fo 97.6 0.00014 2.9E-09 60.0 6.4 42 425-466 21-68 (142)
423 TIGR02190 GlrX-dom Glutaredoxi 97.6 0.00028 6E-09 51.1 7.2 70 426-507 6-78 (79)
424 PF13181 TPR_8: Tetratricopept 97.6 0.00011 2.4E-09 43.1 4.1 32 347-378 2-33 (34)
425 COG2976 Uncharacterized protei 97.6 0.0095 2.1E-07 49.8 16.4 96 282-379 93-192 (207)
426 KOG0985 Vesicle coat protein c 97.6 0.12 2.7E-06 54.0 27.2 304 45-393 981-1326(1666)
427 TIGR03140 AhpF alkyl hydropero 97.6 0.00045 9.7E-09 70.2 10.6 79 428-510 119-198 (515)
428 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00057 1.2E-08 44.2 7.2 48 347-394 2-49 (53)
429 KOG4507 Uncharacterized conser 97.6 0.0013 2.8E-08 63.7 12.5 108 239-357 614-721 (886)
430 cd03419 GRX_GRXh_1_2_like Glut 97.6 0.00024 5.2E-09 52.0 6.2 58 430-492 2-64 (82)
431 KOG0985 Vesicle coat protein c 97.5 0.027 5.8E-07 58.6 22.0 74 61-144 1088-1161(1666)
432 KOG0530 Protein farnesyltransf 97.5 0.0036 7.8E-08 54.6 13.2 168 207-392 58-233 (318)
433 PF03704 BTAD: Bacterial trans 97.5 0.0065 1.4E-07 50.2 14.9 102 239-340 13-124 (146)
434 PF13181 TPR_8: Tetratricopept 97.5 0.00018 4E-09 42.2 3.9 32 313-344 2-33 (34)
435 COG3118 Thioredoxin domain-con 97.5 0.025 5.5E-07 50.7 18.5 133 85-225 137-269 (304)
436 PTZ00253 tryparedoxin peroxida 97.5 0.0009 1.9E-08 58.4 9.6 107 426-537 36-186 (199)
437 KOG3425 Uncharacterized conser 97.5 0.0004 8.7E-09 52.1 6.0 65 424-488 23-104 (128)
438 PRK11657 dsbG disulfide isomer 97.4 0.00057 1.2E-08 61.7 8.2 83 425-509 116-250 (251)
439 COG2976 Uncharacterized protei 97.4 0.0072 1.6E-07 50.5 13.0 26 119-144 92-117 (207)
440 PF05768 DUF836: Glutaredoxin- 97.4 0.00043 9.4E-09 50.2 5.4 77 430-508 2-81 (81)
441 cd02066 GRX_family Glutaredoxi 97.4 0.00061 1.3E-08 48.2 6.2 57 430-493 2-62 (72)
442 PF13462 Thioredoxin_4: Thiore 97.4 0.0014 3E-08 55.4 9.2 80 425-509 11-162 (162)
443 PF13848 Thioredoxin_6: Thiore 97.3 0.0022 4.8E-08 55.4 10.6 95 415-509 83-184 (184)
444 KOG1464 COP9 signalosome, subu 97.3 0.057 1.2E-06 47.6 18.6 278 61-393 40-350 (440)
445 PF01216 Calsequestrin: Calseq 97.3 0.00096 2.1E-08 60.4 8.1 100 414-514 39-147 (383)
446 TIGR02189 GlrX-like_plant Glut 97.3 0.00047 1E-08 52.2 5.2 57 430-493 10-73 (99)
447 PF13174 TPR_6: Tetratricopept 97.3 0.00054 1.2E-08 39.8 4.3 31 348-378 2-32 (33)
448 PF08424 NRDE-2: NRDE-2, neces 97.3 0.0087 1.9E-07 56.6 14.4 151 37-187 8-184 (321)
449 PRK10941 hypothetical protein; 97.3 0.0038 8.1E-08 56.6 11.2 73 313-385 182-254 (269)
450 TIGR02181 GRX_bact Glutaredoxi 97.2 0.00098 2.1E-08 48.3 5.9 55 431-492 2-60 (79)
451 KOG0530 Protein farnesyltransf 97.2 0.0099 2.2E-07 52.0 12.7 131 243-384 54-185 (318)
452 cd02983 P5_C P5 family, C-term 97.2 0.0039 8.4E-08 49.9 9.7 105 410-514 4-118 (130)
453 KOG3170 Conserved phosducin-li 97.2 0.0026 5.6E-08 52.6 8.5 100 408-510 91-200 (240)
454 PF12968 DUF3856: Domain of Un 97.2 0.022 4.7E-07 43.2 12.4 92 284-375 15-129 (144)
455 KOG3171 Conserved phosducin-li 97.2 0.0044 9.5E-08 51.8 9.6 102 408-510 138-250 (273)
456 KOG3824 Huntingtin interacting 97.1 0.0019 4.1E-08 57.5 7.7 74 283-356 121-194 (472)
457 PF08631 SPO22: Meiosis protei 97.1 0.22 4.8E-06 46.1 22.2 122 58-187 3-151 (278)
458 KOG2396 HAT (Half-A-TPR) repea 97.1 0.0069 1.5E-07 57.9 11.7 98 295-392 88-186 (568)
459 cd03029 GRX_hybridPRX5 Glutare 97.1 0.0028 6.1E-08 44.8 7.2 66 430-507 3-71 (72)
460 PHA03050 glutaredoxin; Provisi 97.1 0.0024 5.2E-08 49.0 7.1 63 429-493 14-81 (108)
461 KOG1914 mRNA cleavage and poly 97.1 0.17 3.8E-06 49.2 20.5 191 173-379 309-505 (656)
462 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.29 6.3E-06 46.6 28.8 330 36-377 30-497 (660)
463 KOG2041 WD40 repeat protein [G 97.1 0.42 9E-06 48.1 24.5 151 45-217 689-877 (1189)
464 KOG0890 Protein kinase of the 97.0 0.54 1.2E-05 54.2 26.7 107 279-387 1671-1796(2382)
465 KOG1310 WD40 repeat protein [G 97.0 0.0032 7E-08 60.3 8.6 103 281-383 377-482 (758)
466 PF07079 DUF1347: Protein of u 97.0 0.34 7.3E-06 46.3 27.5 118 239-371 386-520 (549)
467 PF13174 TPR_6: Tetratricopept 97.0 0.0012 2.7E-08 38.2 3.9 32 314-345 2-33 (33)
468 cd03418 GRX_GRXb_1_3_like Glut 97.0 0.004 8.7E-08 44.5 7.4 56 430-492 2-62 (75)
469 PF09613 HrpB1_HrpK: Bacterial 97.0 0.052 1.1E-06 44.3 14.0 86 48-133 10-95 (160)
470 KOG2041 WD40 repeat protein [G 97.0 0.24 5.2E-06 49.7 20.9 239 109-372 686-936 (1189)
471 PF13176 TPR_7: Tetratricopept 97.0 0.0014 3.1E-08 38.8 3.9 25 349-373 2-26 (36)
472 PF09613 HrpB1_HrpK: Bacterial 97.0 0.087 1.9E-06 43.1 15.2 104 281-386 13-116 (160)
473 KOG3783 Uncharacterized conser 97.0 0.2 4.3E-06 48.9 19.9 77 66-144 251-331 (546)
474 COG2909 MalT ATP-dependent tra 96.9 0.66 1.4E-05 48.4 26.8 280 46-337 413-722 (894)
475 PF04781 DUF627: Protein of un 96.9 0.012 2.5E-07 44.5 9.2 92 284-375 2-107 (111)
476 PF07912 ERp29_N: ERp29, N-ter 96.9 0.016 3.4E-07 44.4 9.8 98 415-514 10-122 (126)
477 PRK10941 hypothetical protein; 96.9 0.0087 1.9E-07 54.3 10.2 74 283-356 186-259 (269)
478 COG0790 FOG: TPR repeat, SEL1 96.9 0.24 5.3E-06 46.4 20.2 187 167-381 51-272 (292)
479 KOG3364 Membrane protein invol 96.9 0.032 7E-07 43.5 11.3 84 311-394 31-119 (149)
480 PF04910 Tcf25: Transcriptiona 96.9 0.072 1.6E-06 51.0 16.5 172 109-344 33-225 (360)
481 KOG3824 Huntingtin interacting 96.9 0.0038 8.2E-08 55.7 7.1 77 49-125 117-193 (472)
482 cd03019 DsbA_DsbA DsbA family, 96.9 0.0049 1.1E-07 52.9 8.0 36 425-460 14-50 (178)
483 cd03067 PDI_b_PDIR_N PDIb fami 96.9 0.0046 9.9E-08 45.0 6.2 98 411-509 4-110 (112)
484 COG5191 Uncharacterized conser 96.8 0.0021 4.6E-08 57.3 5.4 145 300-445 95-242 (435)
485 PF14853 Fis1_TPR_C: Fis1 C-te 96.8 0.0074 1.6E-07 39.1 6.6 43 313-355 2-44 (53)
486 cd03027 GRX_DEP Glutaredoxin ( 96.8 0.0055 1.2E-07 43.5 6.7 57 430-493 3-63 (73)
487 PRK15180 Vi polysaccharide bio 96.8 0.45 9.8E-06 45.7 20.5 103 291-393 711-823 (831)
488 COG3914 Spy Predicted O-linked 96.8 0.063 1.4E-06 52.7 15.3 131 249-389 48-185 (620)
489 PF13176 TPR_7: Tetratricopept 96.8 0.0025 5.5E-08 37.7 3.9 28 314-341 1-28 (36)
490 cd03072 PDI_b'_ERp44 PDIb' fam 96.8 0.0067 1.4E-07 47.0 7.2 91 420-512 10-109 (111)
491 PF08631 SPO22: Meiosis protei 96.8 0.13 2.7E-06 47.8 17.0 130 243-377 4-152 (278)
492 PF14561 TPR_20: Tetratricopep 96.7 0.013 2.8E-07 43.3 8.0 67 67-133 7-75 (90)
493 PRK10954 periplasmic protein d 96.7 0.0089 1.9E-07 52.6 8.5 39 426-464 37-79 (207)
494 PF04910 Tcf25: Transcriptiona 96.7 0.087 1.9E-06 50.5 15.6 179 74-266 32-227 (360)
495 PF04781 DUF627: Protein of un 96.7 0.014 3.1E-07 44.0 8.0 91 54-144 2-106 (111)
496 cd02981 PDI_b_family Protein D 96.6 0.015 3.3E-07 43.9 8.4 90 413-509 4-96 (97)
497 PRK10638 glutaredoxin 3; Provi 96.6 0.0079 1.7E-07 43.9 6.3 57 430-493 4-64 (83)
498 PF14561 TPR_20: Tetratricopep 96.6 0.022 4.7E-07 42.1 8.5 62 332-393 8-71 (90)
499 KOG3783 Uncharacterized conser 96.6 0.86 1.9E-05 44.7 27.8 262 99-393 250-538 (546)
500 smart00028 TPR Tetratricopepti 96.6 0.0044 9.6E-08 35.3 4.0 31 348-378 3-33 (34)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-42 Score=322.64 Aligned_cols=339 Identities=18% Similarity=0.107 Sum_probs=307.2
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEA 108 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (543)
....|...+..+++.+|....+...+|..+..+|+..+|..+|.+|++..|..+.+|.+||-++..+|+...|+..|++|
T Consensus 165 ~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 33457777777788888888888888888888888888888888888888888888999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
++++|+..++|++||.+|...+.+++|+.+|.+++. .|+. +..+-+++.+|+++|+.+-|+..|+++++..
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~--------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH--------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc--------hhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999887 4443 3457788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|.+ +.++.++|.++-..|+..+|..+|.+++.+.|...+...++ |.++..+|.+++|...|.++++..|+...
T Consensus 317 P~F-~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL------gni~~E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 317 PNF-PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL------GNIYREQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred CCc-hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH------HHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence 998 88999999999999999999999999999999997766655 99999999999999999999999999887
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTK 347 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 347 (543)
+. .++|.+|.++|++++|+.+|++++++.|..+.++.++|..|..+|+.+.|+.+|.++|.++|...+
T Consensus 390 a~------------nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae 457 (966)
T KOG4626|consen 390 AH------------NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE 457 (966)
T ss_pred hh------------hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence 74 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
++.+||.+|...|+..+|+..|+.++++.|+.+++..++..+...+.
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988877664
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-40 Score=305.63 Aligned_cols=344 Identities=19% Similarity=0.145 Sum_probs=244.0
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
...+++.+|.-++++-++|+.+...|++++|+..|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|+..
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ 184 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY 184 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
.++..+|.++..+|+..+|..+|.+++. .+.. +..|.++|-.+...|+...|+..|+++++++|.. ..+|
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAY 255 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAY 255 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHH
Confidence 8888888888888888888888877776 3322 2235555555556666666666666666666655 4555
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
+++|.+|...+.+++|+.+|.+++...|.+...+-++ |.+|+.+|..+-|+..|+++++++|..++++.-+.+-
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl------a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL------ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA 329 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce------EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence 5666666666666666666666666666554433333 5555555555555555555555555555554322210
Q ss_pred H----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHH
Q 009096 276 K----------------------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333 (543)
Q Consensus 276 ~----------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 333 (543)
. .+.++.++|+++.+.|++++|..+|.++++..|+.+.++.+||.+|.++|++++|+.
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 0 011135577888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 334 DCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 334 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
+|++++.+.|...+++.++|..|..+|+...|+++|.+|+.++|...++..+|+.+...-+.
T Consensus 410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 88888888888888888888888888888888888888888888877777777766555443
No 3
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=4.9e-34 Score=248.24 Aligned_cols=356 Identities=18% Similarity=0.217 Sum_probs=324.6
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRL 122 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (543)
.+|.+++-++.+|..++..|++.+|+..|..|++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHhcCCCC-CCChHH----HhHHH---HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGH-HPDPNE----LLKLQ---SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~-~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
|.++.++|++++|...|.++++ .++... ...+. ....+......+...|++..|+.....++++.|=+ ..+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-a~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-ASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-hHH
Confidence 9999999999999999999998 332221 12222 22234455666778899999999999999998755 778
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
+..++.||...|+...|+..++.+-++..++++..+.+ +.+++..|+.+.++...+++++++|++..++..+..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki------s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI------SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH------HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 88999999999999999999999999999998876666 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh----HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
++.+.....-+......++|.++++..++.++.+|..+. .+..+..|+..-|++.+|+..+.+++.++|++.+++.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 998888888899999999999999999999999998654 4445788999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMK 405 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 405 (543)
.+|.+|+....|+.|+..|++|.+.+|+|..+...+.++.+..++..+.++|++.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKIL 400 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKIL 400 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHh
Confidence 9999999999999999999999999999999999999999999999999999876
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.6e-32 Score=283.31 Aligned_cols=314 Identities=21% Similarity=0.242 Sum_probs=244.5
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
+..+..+|..++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..+|+.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999995 7889999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCCCCCC--ChHHHhH-HH--------------------------HHHHH------------------
Q 009096 128 RLGQVENARHHLCFPGHHP--DPNELLK-LQ--------------------------SFEKH------------------ 160 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~~~--~~~~~~~-~~--------------------------~~~~~------------------ 160 (543)
.+|++++|+..|..+...+ +...... +. ....+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998776553311 1100000 00 00000
Q ss_pred ---------HHHHHh---hhhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCC
Q 009096 161 ---------LNRCAE---SRKIGDWKTVLRETDAAIAIGV--DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP 226 (543)
Q Consensus 161 ---------~~~~~~---~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 226 (543)
..++.. ....++|++|+..|++++..++ .....++..+|.++..+|++++|+..|++++..+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 000100 0123577888888888887641 22356677788888888888888888888888888775
Q ss_pred hhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009096 227 PSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306 (543)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 306 (543)
.. ++.+|.++...|++++|+..|+++++.+|+++.++ ..+|.++...|++++|+.+|+++++
T Consensus 366 ~~------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 366 QS------YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY------------YHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HH------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 44448888888888888888888888888887765 3368888888888888888888888
Q ss_pred cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 307 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
++|++..++.++|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++++.|++.
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887653
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.3e-32 Score=282.82 Aligned_cols=330 Identities=10% Similarity=-0.034 Sum_probs=295.7
Q ss_pred cccccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHH
Q 009096 24 IVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVS 103 (543)
Q Consensus 24 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 103 (543)
.++.+....|...+...+...|.++++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 34455556688888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 104 DCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
.|++++.++|+++.++..++.++...|++++|+..+.+++. .+++... +... ..+...|++++|+..+++
T Consensus 132 ~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--------~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 132 LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--------IATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH--------HHHH-HHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 4443321 1122 236778999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHH----HHHHHHHH
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFEN----AVSSAEKA 258 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~----A~~~~~~a 258 (543)
++...|.........++.++...|++++|+..+++++...|++...... +|.++...|++++ |+..|+++
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~------Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS------LGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH------HHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9998775545556667889999999999999999999999998654444 4999999999986 89999999
Q ss_pred hhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 259 GLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 259 l~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
+..+|++..++. .+|.++...|++++|+..++++++++|+++.++.++|.++...|++++|+..|+++
T Consensus 277 l~l~P~~~~a~~------------~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 277 LQFNSDNVRIVT------------LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999987753 47999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
+..+|++...+..+|.++...|++++|+..|+++++.+|++.
T Consensus 345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999988888889999999999999999999999999864
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=9.6e-32 Score=277.62 Aligned_cols=344 Identities=12% Similarity=0.048 Sum_probs=267.0
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|+..+.+++...|. +..+.++|.++...|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|..+.
T Consensus 143 ~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34588888889998885 78999999999999999999999999999999999999999999999999999998876654
Q ss_pred hcCC------------------------------CChhHHHHHHH---------------------------------HH
Q 009096 110 RLDP------------------------------GYNRAHQRLAS---------------------------------LY 126 (543)
Q Consensus 110 ~~~p------------------------------~~~~~~~~la~---------------------------------~~ 126 (543)
..++ .+...+..++. .+
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (615)
T TIGR00990 222 IIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKS 301 (615)
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHH
Confidence 4332 21111111111 11
Q ss_pred ---HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 127 ---FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 127 ---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
...++|++|+..|++++.... ........+..++.++...|++++|+..++++++.+|.. ...+..+|.++.
T Consensus 302 ~e~~~~~~y~~A~~~~~~al~~~~----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~ 376 (615)
T TIGR00990 302 PESKADESYEEAARAFEKALDLGK----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-TQSYIKRASMNL 376 (615)
T ss_pred HHhhhhhhHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Confidence 112578889999988886221 011223457778888888899999999999999888876 667888888888
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|++++|+..|+++++.+|+++.. ++.+|.++...|++++|+..|++++.++|++...+ ..
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~------------~~ 438 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDI------YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH------------IQ 438 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH------------HH
Confidence 9999999999999988888888654 44448888889999999999999999988887764 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHH-
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA------LLRRAVSN- 356 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~- 356 (543)
+|.++...|++++|+..|++++...|+++.++..+|.++..+|++++|+..|++++.++|++... +...+.++
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 68888888888888888888888888888888888888888888888888888888888764332 23333333
Q ss_pred HHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 357 EKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
...|++++|+..++++++++|++..++..++.+...+++..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 34688888888888888888888887777777776665543
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.9e-30 Score=283.43 Aligned_cols=335 Identities=14% Similarity=0.095 Sum_probs=276.2
Q ss_pred cccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchh--------------hHHhHHHHHH
Q 009096 28 CSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAA--------------YRSNRAATLT 93 (543)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~ 93 (543)
+....|+..+++++..+|.+++++..+|.+++..|++++|+.+|+++++.+|++.. ....+|.++.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33456888899999999999999999999999999999999999999999997643 2245688999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCCh-HHHhHHHH---------------
Q 009096 94 ALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDP-NELLKLQS--------------- 156 (543)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~-~~~~~~~~--------------- 156 (543)
..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++ .++. .....+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 3332 22211111
Q ss_pred ------------------HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 157 ------------------FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 157 ------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
...+..++..+...|++++|+..|+++++.+|++ +.+++.+|.+|...|++++|+..++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1123346677788999999999999999999987 778889999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--------------------------------------
Q 009096 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL-------------------------------------- 260 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------------------------------------- 260 (543)
++..|.++...... +..+...+++++|+..++++..
T Consensus 522 l~~~P~~~~~~~a~------al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 522 AQQKPNDPEQVYAY------GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHcCCCCHHHHHHH------HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99999887654333 4444445555555555444321
Q ss_pred --cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 261 --LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 261 --~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
..|.++... ..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++
T Consensus 596 l~~~p~~~~~~------------~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 596 LRQQPPSTRID------------LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHhCCCCchHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 234444332 347888999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++..|+++.++..+|.++...|++++|++.|++++...|+++.
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999999999999999999999999999999999998876553
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=1.1e-29 Score=261.25 Aligned_cols=321 Identities=12% Similarity=0.050 Sum_probs=283.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+...+...+..+.+.|++++|+..++.++...|+++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009096 127 FRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL 205 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~ 205 (543)
...|++++|+..|++++. .|+.. ..+..++..+...|++++|+..+.+++...|+. +..+...+ .+...
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~--------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~-~l~~~ 190 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNS--------QIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCL-SFLNK 190 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-HHHHc
Confidence 999999999999999988 44432 346778888999999999999999999999877 45555543 48899
Q ss_pred cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 206 HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 206 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
|++++|+..+++++...|...... ....+.++...|++++|+..|++++..+|++..++ ..+|
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~-----~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~------------~~Lg 253 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQES-----AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR------------RSLG 253 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhH-----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH------------HHHH
Confidence 999999999999998876443221 12337788999999999999999999999998775 3479
Q ss_pred HHHHhcCCHHH----HHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 286 NNLFSSRRYSE----ACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 286 ~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
.++...|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|+
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999986 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+++|+..|+++++.+|++......++.+....+
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 999999999999999998776555544444443
No 9
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9.1e-30 Score=231.75 Aligned_cols=333 Identities=21% Similarity=0.227 Sum_probs=282.3
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
.+..+..+|+-++..|+|++||.+|++||++.|+.+..|.+++.||...|+|++.++...++++++|++..++++++..+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCC------------------------------CC------CCChHHH-------------------
Q 009096 127 FRLGQVENARHHLCFP------------------------------GH------HPDPNEL------------------- 151 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a------------------------------~~------~~~~~~~------------------- 151 (543)
..+|++.+|+....-. ++ -|.+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 9999999987643100 00 0000000
Q ss_pred --------hH---------------------------------------HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 009096 152 --------LK---------------------------------------LQSFEKHLNRCAESRKIGDWKTVLRETDAAI 184 (543)
Q Consensus 152 --------~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 184 (543)
.. -..+.++...|..++-.|++..|...++.+|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 0012334445666677899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 185 AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 185 ~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
.++|.. ...|..++.+|...++.++-...|.++..++|.+++. ++.+|++++-++++++|+..|++++.++|+
T Consensus 354 ~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv------YyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 354 KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV------YYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch------hHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 999887 4558889999999999999999999999999999874 455599999999999999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 265 NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
+...+ .+++.+.+++++++++...|+.+++..|+.++++...|.++..+++++.|++.|.+++.+.|.
T Consensus 427 ~~~~~------------iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 427 NAYAY------------IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88765 457889999999999999999999999999999999999999999999999999999999998
Q ss_pred ------CHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 345 ------YTKALLRRAVSNE-KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 345 ------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
++..+.+.|.+.. -.+++..|+..+++|++++|....+...++....+..+..+
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 6666666666543 35899999999999999999999999998888777765543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.2e-29 Score=275.17 Aligned_cols=355 Identities=11% Similarity=0.050 Sum_probs=288.2
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-----------------------------
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP----------------------------- 79 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----------------------------- 79 (543)
....|+..+++.+..+|.++..++.+|..++..|++++|+..+++++...+
T Consensus 162 ~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 162 QRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 344588888889999999999999999999999999999999999865432
Q ss_pred -----cchh--------------------hHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q 009096 80 -----ENAA--------------------YRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 80 -----~~~~--------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (543)
++.. ....+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++
T Consensus 242 l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e 321 (1157)
T PRK11447 242 LQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321 (1157)
T ss_pred HHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 1110 001347888999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC-CCChHH---HhHH---HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 009096 135 ARHHLCFPGH-HPDPNE---LLKL---QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ 207 (543)
Q Consensus 135 A~~~~~~a~~-~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~ 207 (543)
|+..|+++++ .++... +..+ .........+..+...|++++|+..|+++++.+|++ ..++..+|.++...|+
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD-SYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCC
Confidence 9999999987 333221 1111 122234556888899999999999999999999987 6788889999999999
Q ss_pred hhHHHHHhhcCCCCCCCCChhHHHHHH------------------------------------HHHHHHHHHhhcChHHH
Q 009096 208 NEDADSCLSNMPKFEHYSPPSQVKFLV------------------------------------WLLKLMFNISELRFENA 251 (543)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~a~~~~~~g~~~~A 251 (543)
+++|+..|+++++.+|++......+.. +..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998655433211 22346777889999999
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--------------------
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------------------- 311 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------------------- 311 (543)
+..|+++++.+|+++.++. .+|.++...|++++|+..|+++++.+|++
T Consensus 481 ~~~~~~Al~~~P~~~~~~~------------~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 481 AELQRQRLALDPGSVWLTY------------RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999987653 35666666666766666666666655544
Q ss_pred ------------------------------------------------------hhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 312 ------------------------------------------------------SILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 312 ------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+..+..+|.++.+.|++++|+..|++
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556678888889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
+++.+|+++.+++.++.++...|++++|++.++++++..|+++.+...++.+...+++.
T Consensus 629 al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 629 VLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999998888777766654443
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.2e-29 Score=272.70 Aligned_cols=347 Identities=20% Similarity=0.185 Sum_probs=284.3
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+...+.......|.++..+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+
T Consensus 450 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444445556677788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
|.+..++..++.++...|++++|+..+++++. .+.. ...++.++..+...|++++|+..+++++...|..
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 600 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE--------IEPALALAQYYLGKGQLKKALAILNEAADAAPDS- 600 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-
Confidence 88888888888888888888888888888765 2221 2335667777888888888888888888887765
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+..+..+|.++...|++++|+..|+++++..|.++..+. .+|.++...|++++|+..|++++..+|++...+..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL------LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 677888888888888888888888888888887755433 33888888888888888888888888887766554
Q ss_pred HHhHH----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHH
Q 009096 272 LTNVK----------------------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 272 l~~~~----------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 329 (543)
+..+. ....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|+++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHH
Confidence 43321 11224557889999999999999999999999887 77888999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 330 NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 330 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++..|+++.+...+..+....++
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999888887776655
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.9e-29 Score=273.69 Aligned_cols=342 Identities=14% Similarity=0.054 Sum_probs=206.6
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+...+++.+...|.+...+..++..+...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 44444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH-hH-------------------------HHHHHHHHHHHH
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL-LK-------------------------LQSFEKHLNRCA 165 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~-~~-------------------------~~~~~~~~~~~~ 165 (543)
|.++.+|..+|.++...|++++|+..|+++++ .++.... .. +.....+..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 55555555555555555555555555555443 1111100 00 000112333444
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
.+...|++++|+..++.+....|.. +..+..+|.++...|++++|+..|++++...|++ . .+...+.++...
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~------~~~~l~~~~~~~ 749 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKA-ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q------NAIKLHRALLAS 749 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h------HHHHHHHHHHHC
Confidence 4444455555555555544444433 3444555556666666666666666665555554 1 122235556666
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|++++|+..+++++..+|++..++ ..+|.++...|++++|+..|+++++.+|+++.++.++|.++...
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLR------------TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 666666666666666666655443 34677888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
|+ .+|+..+++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.+...+..+....++
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 88 7788888888888888888888888888888888888888888888888888887777766555543
No 13
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-28 Score=223.95 Aligned_cols=344 Identities=23% Similarity=0.335 Sum_probs=269.6
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.....|+..+..|+|+.|+.+|..++.++|.|...+.++..+|..+|+|++|++.-.+.++++|+.+..|.++|..+.-+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 45567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHhcCCCC-CCChHHH-hHH-----------------------------------------------------
Q 009096 130 GQVENARHHLCFPGH-HPDPNEL-LKL----------------------------------------------------- 154 (543)
Q Consensus 130 g~~~~A~~~~~~a~~-~~~~~~~-~~~----------------------------------------------------- 154 (543)
|+|++|+..|.+.++ .++.... ..+
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 888888888877776 3332211 000
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHhhhhcCCHHHH
Q 009096 155 ----------------------------------------------------------QSFEKHLNRCAESRKIGDWKTV 176 (543)
Q Consensus 155 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~A 176 (543)
........+|...++..++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111223355666777888889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH-HHHHHHHHHHHhhcChHHHHHHH
Q 009096 177 LRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF-LVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 177 ~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
++.|..++.++ .. ...+.+.+-+|+..|.+.+++.....+++.....-.....+ ..+...|..+...++++.|+.+|
T Consensus 244 ~q~y~~a~el~-~~-it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA-TD-ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh-hh-hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99999999987 43 56677789999999999988888877665544331111111 22333477889999999999999
Q ss_pred HHHhhcCCCcHHHHHHHH---------------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHH
Q 009096 256 EKAGLLDYSNVEIASVLT---------------NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAI 320 (543)
Q Consensus 256 ~~al~~~p~~~~~~~~l~---------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 320 (543)
.+++..... ++...-+. +...+......|+.++..|+|..|+..|.++|..+|+++.+|.|+|.
T Consensus 322 ~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 999865544 22211111 12234445678999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
||.++|.+..|+..++.+++++|++..+|++.|.++..+.+|++|.+.|+++++.+|++.++...+.++...+...
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~ 476 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGD 476 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887443
No 14
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-29 Score=222.54 Aligned_cols=339 Identities=30% Similarity=0.391 Sum_probs=297.6
Q ss_pred CCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009096 34 NNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113 (543)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (543)
........+.....++.....|..++...+|.+|+..|..|++..|+++..|.+++.++...++|++|+-..++.++++|
T Consensus 35 ~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 35 TSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD 114 (486)
T ss_pred cCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC
Confidence 33333444445567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--CCC
Q 009096 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV--DSS 191 (543)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~ 191 (543)
..+..+...+.|+..+++..+|...|+.. .. +....++..+++.+.... +..
T Consensus 115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~~~------~~--------------------~~~anal~~~~~~~~s~s~~pac 168 (486)
T KOG0550|consen 115 GFSKGQLREGQCHLALSDLIEAEEKLKSK------QA--------------------YKAANALPTLEKLAPSHSREPAC 168 (486)
T ss_pred CccccccchhhhhhhhHHHHHHHHHhhhh------hh--------------------hHHhhhhhhhhcccccccCCchh
Confidence 99999999999999999999998877511 00 011223333333333322 112
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+....+.|+...|++++|...--.++++++.+.+ +++.+|.+++..++.+.|+..|++++.++|++......
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~------al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE------ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH------HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 455667899999999999999999999999999844 56666999999999999999999999999999999998
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTK 347 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 347 (543)
...++....+...|+-.++.|+|.+|.++|..+|.++|++ +..|.++|.+..++|+..+|+..++.++.++|....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 8889999999999999999999999999999999999987 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMK 405 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 405 (543)
++...|.|+..+++|++|+++|++|+++..+ .+....+..+...|++.+++++|++.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykil 379 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKIL 379 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHh
Confidence 9999999999999999999999999999887 99999999999999999999999875
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.9e-27 Score=249.92 Aligned_cols=352 Identities=15% Similarity=0.024 Sum_probs=279.7
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|...+++++...|.+++.+..+|.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++++
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345777788888889999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHH------------------------H----hHHHHHHHHH
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNE------------------------L----LKLQSFEKHL 161 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------------~----~~~~~~~~~~ 161 (543)
+.+|+++.++..++.++...+..++|+..++++...|+... . ..+..+..+.
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998999988888887665221100 0 0000001111
Q ss_pred ------------------HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC
Q 009096 162 ------------------NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223 (543)
Q Consensus 162 ------------------~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 223 (543)
.....+...|++++|+..|+++++..|..+......++.+|..+|++++|+..|++++...|
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 11223467789999999999999887544444555579999999999999999999988877
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHH---hHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 009096 224 YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLT---NVKMVVRARTRGNNLFSSRRYSEACSA 300 (543)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~---~~~~~~~~~~~g~~~~~~~~~~~A~~~ 300 (543)
.+..... .....++.++...|++++|+..++++....|.....+.... +-........+|.++...|++++|++.
T Consensus 304 ~~~~~~~--~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 304 TIADLSD--EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCh--HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6522111 11222356778999999999999999988874322110000 000011123478999999999999999
Q ss_pred HHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 301 YGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 301 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
+++++...|+++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 009096 381 EVAE 384 (543)
Q Consensus 381 ~~~~ 384 (543)
.+..
T Consensus 462 ~~~~ 465 (765)
T PRK10049 462 GVQR 465 (765)
T ss_pred HHHH
Confidence 8763
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.2e-27 Score=222.67 Aligned_cols=309 Identities=16% Similarity=0.103 Sum_probs=265.8
Q ss_pred HHHHHHhhHHH--hcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 49 EEVKRAGNEMY--RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 49 ~~~~~~a~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+.+..+|..+. .+-+..+|+..|.+.-...++..+.+..+|..|+++++|++|..+|+.+-++.|-..+..-....++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 44555565555 4456789999999966777888899999999999999999999999999999998777666666666
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
..+.+-- ++.++.+-+-..++. ..+.|...|.++.-+++++.|++.|+++++++|.+ ..+|.++|.-+....
T Consensus 398 WHLq~~v-~Ls~Laq~Li~~~~~------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-aYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 398 WHLQDEV-ALSYLAQDLIDTDPN------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-AYAYTLLGHESIATE 469 (638)
T ss_pred HHHHhhH-HHHHHHHHHHhhCCC------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-chhhhhcCChhhhhH
Confidence 6665533 333333322211111 13458889999999999999999999999999988 788999999999999
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
++|.|..+|+.++..+|.+ +.+|+.+|.+|.++++++.|.-.|++|++++|.+...... .|.
T Consensus 470 e~d~a~~~fr~Al~~~~rh------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~------------~g~ 531 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRH------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH------------IGR 531 (638)
T ss_pred HHHhHHHHHHhhhcCCchh------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh------------hhH
Confidence 9999999999999999998 5677777999999999999999999999999999877532 699
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
++.+.|+.++|+..|++|+.++|.++...+..|.++..++++++|+..+++.-++-|++..+++.+|.+|.++|+.+.|+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHH
Q 009096 367 RDYEALRRELPGDNEVA 383 (543)
Q Consensus 367 ~~~~~al~~~p~~~~~~ 383 (543)
..|.-|..++|.-.++.
T Consensus 612 ~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 612 LHFSWALDLDPKGAQIQ 628 (638)
T ss_pred HhhHHHhcCCCccchhh
Confidence 99999999999866643
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=7.9e-26 Score=222.31 Aligned_cols=284 Identities=15% Similarity=0.041 Sum_probs=185.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRL 122 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 122 (543)
.....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344556667777777777777777777777777777777777777777777777777777776643221 2345566
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.+|...|++++|+..|++++ +..|.. ..++..++.++
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l-----------------------------------------~~~~~~-~~~~~~la~~~ 151 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLV-----------------------------------------DEGDFA-EGALQQLLEIY 151 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-----------------------------------------cCCcch-HHHHHHHHHHH
Confidence 666666666666666655444 333332 44555566666
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
...|++++|+..++++++..|.+.... ....+..+|.++...|++++|+..|+++++.+|++...+.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------ 218 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVE-IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI------------ 218 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH------------
Confidence 666666666666666666555443211 1112334466777777777777777777777776655432
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCC-hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYN-SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
.+|.++...|++++|++.|+++++.+|.+ ..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~ 297 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCC
Confidence 25777777777777777777777776655 345666777777777777777777777777776543 3677777777777
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+++|+..++++++..|++..+...+
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 7777777777777777766554333
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.6e-27 Score=212.47 Aligned_cols=340 Identities=14% Similarity=0.127 Sum_probs=282.0
Q ss_pred cccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHH
Q 009096 26 RSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDC 105 (543)
Q Consensus 26 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 105 (543)
+.+..+.|++.++.+++..|..+-.+-+++-+|...|+|++-++...++++++|+...+++.++.++..+|++++|+...
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 44445668889999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred HHH------------------Hhc--------------CCC---------------------------------------
Q 009096 106 EEA------------------VRL--------------DPG--------------------------------------- 114 (543)
Q Consensus 106 ~~a------------------l~~--------------~p~--------------------------------------- 114 (543)
.-. ++. .|.
T Consensus 207 tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~ 286 (606)
T KOG0547|consen 207 TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEA 286 (606)
T ss_pred hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHH
Confidence 321 100 000
Q ss_pred -----------------------------C---------hhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHH
Q 009096 115 -----------------------------Y---------NRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQ 155 (543)
Q Consensus 115 -----------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~ 155 (543)
+ ..++...|..++..|++-.|...|++++. .+.+.
T Consensus 287 l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~------ 360 (606)
T KOG0547|consen 287 LEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN------ 360 (606)
T ss_pred HHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc------
Confidence 0 22344445555555666666666666665 22221
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHH
Q 009096 156 SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVW 235 (543)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
..++.++..|....+.++....|.++..++|.+ +.+|+.+|.+++-++++++|+..|++++.++|.+..++..+
T Consensus 361 --~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n-~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl--- 434 (606)
T KOG0547|consen 361 --SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN-PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL--- 434 (606)
T ss_pred --hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH---
Confidence 227888999999999999999999999999998 78899999999999999999999999999999996655555
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----
Q 009096 236 LLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY----- 310 (543)
Q Consensus 236 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----- 310 (543)
+.+.+++++++++...|+.+.+..|..++++.+ .|.++..+++|++|++.|.+++++.|.
T Consensus 435 ---~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~------------fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 435 ---CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL------------FAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH------------HHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 888999999999999999999999999999765 488999999999999999999999998
Q ss_pred -ChhHHhHHHHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 311 -NSILYCNRAICWS-KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 311 -~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
++..+.+.|.+.. -.+++..|+..++++++++|....++..+|.+..++|+.++|+++|+++..+.....+.......
T Consensus 500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~ 579 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSL 579 (606)
T ss_pred ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555655555433 45899999999999999999999999999999999999999999999999987666665555444
Q ss_pred HHHH
Q 009096 389 AQVA 392 (543)
Q Consensus 389 ~~~~ 392 (543)
+...
T Consensus 580 aeAA 583 (606)
T KOG0547|consen 580 AEAA 583 (606)
T ss_pred HHHH
Confidence 4333
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.1e-25 Score=236.74 Aligned_cols=351 Identities=14% Similarity=0.041 Sum_probs=275.4
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...++..+.+....+|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33455556666667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH-hHHHHHHH----------------------------
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL-LKLQSFEK---------------------------- 159 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~-~~~~~~~~---------------------------- 159 (543)
+.+|+++. +..+|.++...|++++|+..++++++ .|+.... ..+..+..
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~ 189 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEAD 189 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999 99999999999999999999999998 4444322 21111100
Q ss_pred -HHHHHHhh-----hhcCCH---HHHHHHHHHHHHcC---CCCCHH---HHHHHHHHHHHccChhHHHHHhhcCCCCCCC
Q 009096 160 -HLNRCAES-----RKIGDW---KTVLRETDAAIAIG---VDSSPQ---LVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224 (543)
Q Consensus 160 -~~~~~~~~-----~~~~~~---~~A~~~~~~~l~~~---p~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 224 (543)
........ ...+++ ++|+..++++++.. |+..+. +...+...+...|++++|+..|+++++..+.
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 00000011 111233 67788888888653 332221 1122123456779999999999999988755
Q ss_pred CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH-HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009096 225 SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI-ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 303 (543)
.+.... ...|.++...|++++|+..|++++..+|.+... ... ...++.++...|++++|+..+++
T Consensus 270 ~P~~a~-----~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~---------~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 270 IPPWAQ-----RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE---------LADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred CCHHHH-----HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH---------HHHHHHHHHhcccHHHHHHHHHH
Confidence 433211 112889999999999999999999988876211 011 12357778999999999999999
Q ss_pred HhccCCCC---------------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 304 GLKYDSYN---------------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 304 al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+....|.. ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|++.
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99887732 346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 369 YEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 369 ~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
++++++++|++..+...+..+...+++
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 999999999999988777666555544
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.3e-25 Score=219.23 Aligned_cols=357 Identities=15% Similarity=0.081 Sum_probs=295.6
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
.|...+...+...|.|+-.++..|...+..|+|-.|+.+|++++.++|.. ++....+|.|+.++|+.+.|+..|.++++
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 45666777888999999999999999999999999999999999999976 67888999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCC---HHHHHHHhcCCCC--CCChHHHhH----------------------------HHHH
Q 009096 111 LDPGYNRAHQRLASLYFRLGQ---VENARHHLCFPGH--HPDPNELLK----------------------------LQSF 157 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~--~~~~~~~~~----------------------------~~~~ 157 (543)
++|.+..++..||.+-....+ +..+...+.++.. ..+|..... ....
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 998888887777776555443 4455556655554 333332211 1234
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
+.++.+|..+..+|+|++|..+|.++++.++++....++.+|.++...|+++.|..+|+++++..|++......+
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL----- 382 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL----- 382 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH-----
Confidence 567889999999999999999999999999888677788899999999999999999999999999996655554
Q ss_pred HHHHHHhhc----ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH--------------------------HHHHHHHHHH
Q 009096 238 KLMFNISEL----RFENAVSSAEKAGLLDYSNVEIASVLTNVKM--------------------------VVRARTRGNN 287 (543)
Q Consensus 238 ~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------------------------~~~~~~~g~~ 287 (543)
|.+|...+ ..+.|..+..++++..|.+.++|..+..+.. ...+.++|..
T Consensus 383 -G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 -GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred -HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 77776665 6688899999999999999888876654321 1125678999
Q ss_pred HHhcCCHHHHHHHHHHHhcc-----CCCC-----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 288 LFSSRRYSEACSAYGEGLKY-----DSYN-----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
++..|++.+|...|.+|+.. +++. ....+|+|.|+..+++++.|.+.|..++..+|...+++..+|....
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 99999999999999999876 2222 2468999999999999999999999999999999999999998888
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
..++..+|...++.++..+..+|+++..++.+.....
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 8899999999999999999999999999997665543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=6.7e-25 Score=230.57 Aligned_cols=325 Identities=12% Similarity=0.016 Sum_probs=268.7
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCC-----------------
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGR----------------- 97 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~----------------- 97 (543)
.......|.+.+.+...+....+.|++++|...|+.+....++- ......++.+|...+.
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 33445568899999999999999999999999999999863322 2344477777776544
Q ss_pred --------H---HHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHH
Q 009096 98 --------L---TEAVSDCEEAVRLDPG--YNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNR 163 (543)
Q Consensus 98 --------~---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ 163 (543)
. ..+...+.+++...|. ++.+|+.+|.++.. ++..+|+..+.+++. .|+.. ..+..
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~---------~~L~l 515 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW---------QHRAV 515 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH---------HHHHH
Confidence 2 2344555666667788 99999999999998 899999998888876 44321 25556
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI 243 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 243 (543)
+..+...|++++|+..+++++...|.. ..+..+|.++...|++++|+.+++++++..|........ ++....
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~------La~~l~ 587 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW------LHAQRY 587 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH------HHHHHH
Confidence 777789999999999999988775543 346778999999999999999999999998887432222 244555
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
..|++++|+..|+++++.+|+ ...+ ..+|.++.+.|++++|+..|+++++++|+++.++.++|.++.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~------------~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAY------------VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 669999999999999999996 5553 347999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
..|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..+....+......
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876665544433
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.3e-25 Score=217.32 Aligned_cols=345 Identities=20% Similarity=0.177 Sum_probs=212.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
-++.+|.+|.++..+|+|++|..+|.++++.+|++ .-.++.+|..|+..|+++.|..+|+++++..|++.+....||.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 34455555555555555555555555555555555 44555555555555555555555555555555555555555555
Q ss_pred HHHhC----CHHHHHHHhcCCCC--CCChHHHhHHHH-----------------------------HHHHHHHHHhhhhc
Q 009096 126 YFRLG----QVENARHHLCFPGH--HPDPNELLKLQS-----------------------------FEKHLNRCAESRKI 170 (543)
Q Consensus 126 ~~~~g----~~~~A~~~~~~a~~--~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~ 170 (543)
|...+ ..+.|..++.++++ +.+...+..+.. .+.+.+.|..++..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 55543 33444445444444 111111111100 11233344555556
Q ss_pred CCHHHHHHHHHHHHHc-----CCCC----CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 171 GDWKTVLRETDAAIAI-----GVDS----SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~-----~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
|++++|...+.+++.. +++. .....+++|.++..+++++.|.+.|..+++.+|...+.+..+ |.+
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl------~~m 539 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL------GCM 539 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh------hHH
Confidence 6666666666666554 1111 012355566666666666666666666666666654333333 555
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH------------------------HHHHHHHHHHHh-------
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV------------------------VRARTRGNNLFS------- 290 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------------~~~~~~g~~~~~------- 290 (543)
....+...+|...++.++..+..++.++.++.++... -++..+|+.+++
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 5556677777777777777777777777766643211 113456665543
Q ss_pred -----cCCHHHHHHHHHHHhccCCCC----------------------------------hhHHhHHHHHHHHccCHHHH
Q 009096 291 -----SRRYSEACSAYGEGLKYDSYN----------------------------------SILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 291 -----~~~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~la~~~~~~g~~~~A 331 (543)
.+.+++|+.+|.++++.+|.+ ..+|.|+|.||..+|+|..|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 356778888888888888765 46788888888888888888
Q ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 332 IEDCNVALRIQ--PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 332 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
++.|+.+++.. .++++++..||.+++..|++.+|.+...+|+.+.|.++.+..+++.+...+....
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 88888888753 3567888888888888888888888888888889999888888887777665443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.3e-24 Score=228.37 Aligned_cols=296 Identities=12% Similarity=-0.022 Sum_probs=255.8
Q ss_pred HHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 67 ALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 67 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+...+.+++...|. ++.+++++|.|+.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45556666667788 89999999999998 899999999999999999754 466678888899999999999998876
Q ss_pred C-CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC
Q 009096 145 H-PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223 (543)
Q Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 223 (543)
. +.+. .++..+..+...|++++|+..++++++.+|+. ...+..++......|++++|+..++++++.+|
T Consensus 538 ~~p~~~---------a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 538 HDMSNE---------DLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred cCCCcH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 3 3322 25667888899999999999999999998877 44555556666677999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009096 224 YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303 (543)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 303 (543)
+ .. .+..+|.++...|++++|+..|++++.++|+++.++ .++|.++...|++++|+..|++
T Consensus 608 ~-~~------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~------------~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 608 S-AN------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ------------AALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred C-HH------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHCCCHHHHHHHHHH
Confidence 5 43 344559999999999999999999999999999875 3479999999999999999999
Q ss_pred HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 304 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
+++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.++++..++|+.. +.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~ 747 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IG 747 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 55
Q ss_pred HHHHHHHHHHH
Q 009096 384 ESLHNAQVALK 394 (543)
Q Consensus 384 ~~l~~~~~~l~ 394 (543)
...+......+
T Consensus 748 ~~~g~~~~~~~ 758 (987)
T PRK09782 748 LRSGAMSTANN 758 (987)
T ss_pred cccchHhhhcc
Confidence 55554444333
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-23 Score=191.29 Aligned_cols=323 Identities=12% Similarity=0.022 Sum_probs=236.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHH-----------------------------HHHHcC
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAA-----------------------------TLTALG 96 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------------------~~~~~g 96 (543)
.|+-.++..|..+.+.|..+.|+..|..++...|.+..+|..|+. ++..+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999998987777765554 344555
Q ss_pred CHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHH---HH---H----H--H---
Q 009096 97 RLTEAVSDCEEAVRL-DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ---SF---E----K--H--- 160 (543)
Q Consensus 97 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~---~----~--~--- 160 (543)
+.++++..++..+.. -|.+...-...|.+.....++++|+..|+...+. +|-....+. ++ . . +
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 677888888888877 7888888889999999999999999999998873 332211110 00 0 0 0
Q ss_pred -------------HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCCh
Q 009096 161 -------------LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP 227 (543)
Q Consensus 161 -------------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 227 (543)
.-.|..|.-.++.++|+.+|+++++++|.. ..+|.++|.-|..+++...|+..|+++++++|.+
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-- 397 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-- 397 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--
Confidence 012344455667777777777777777776 5667777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009096 228 SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307 (543)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 307 (543)
..+|+.+|++|..++.+.=|+-+|++++...|.++..|.. +|.+|.+.++.++|+++|.+++..
T Consensus 398 ----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a------------LG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 398 ----YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA------------LGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred ----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH------------HHHHHHHhccHHHHHHHHHHHHhc
Confidence 4566666777777777777777777777777777777644 577777777777777777777777
Q ss_pred CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALR-------IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
...+..++..+|.+|.++++.++|..+|++.++ ..|+-..+...|+.-+.+.+++++|..+..+++.-++.-.
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 777777777777777777777777777777776 3454556666777777777777777777777777665555
Q ss_pred HHHHHHHH
Q 009096 381 EVAESLHN 388 (543)
Q Consensus 381 ~~~~~l~~ 388 (543)
++...+..
T Consensus 542 eak~LlRe 549 (559)
T KOG1155|consen 542 EAKALLRE 549 (559)
T ss_pred HHHHHHHH
Confidence 55544433
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1e-24 Score=207.18 Aligned_cols=286 Identities=15% Similarity=0.153 Sum_probs=239.4
Q ss_pred hhHHhHHHHHHHc--CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHH
Q 009096 83 AYRSNRAATLTAL--GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEK 159 (543)
Q Consensus 83 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~ 159 (543)
..+..+|..|... -+..+|+..|.+.-...++-...+..+|..|+.+++|++|..+|+.+-+ .|-.-. .+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~--~mei--- 392 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK--GMEI--- 392 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--chhH---
Confidence 4455666666554 4668999999997777788889999999999999999999999988765 111110 0000
Q ss_pred HHHHHHhhhhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 160 HLNRCAESRKIGDWKTVLR-ETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+ ..++..+.+-- ++. +.+..+..+|.. |..|..+|.||..+++++.|+++|+++++++|.....+..+
T Consensus 393 y---ST~LWHLq~~v-~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLl------ 461 (638)
T KOG1126|consen 393 Y---STTLWHLQDEV-ALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLL------ 461 (638)
T ss_pred H---HHHHHHHHhhH-HHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhc------
Confidence 0 01111111111 222 234556666665 89999999999999999999999999999999986544444
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
|.-+.....++.|..+|++++..+|.+..+| +.+|.+|.++++++.|.-.|++|++++|.+......+
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw------------YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~ 529 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVDPRHYNAW------------YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI 529 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCCchhhHHH------------HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh
Confidence 8889999999999999999999999999987 4589999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
|..+.++|+.++|+..|++|+.++|.++-..+.+|.++..++++++|+..+++..++-|++..+...++++...+++.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888654
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=5.3e-23 Score=201.43 Aligned_cols=321 Identities=18% Similarity=0.198 Sum_probs=259.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
.+.....++..|+.++..|++++|..++.++++++|.++.+|+.||.+|..+|+.++|+..+-.|-.++|.+.+.|..++
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP----QLVACK 198 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~ 198 (543)
.....+|++.+|+-+|.++++ .|... ...+.++..+.+.|+...|...|.+++...|.... ......
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 999999999999999999998 33332 34678889999999999999999999999984322 223335
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHH---------
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVE--------- 267 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~--------- 267 (543)
+..+...++-+.|++.++.++....+... ...+...+.++.....++.|......... ..+++.+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEAS----LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhcccccc----ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 67778888889999999998873222110 11112227778888888888877665543 1111110
Q ss_pred -----------------H-HHHHHh-----------------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009096 268 -----------------I-ASVLTN-----------------------VKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306 (543)
Q Consensus 268 -----------------~-~~~l~~-----------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 306 (543)
+ ...... .....-+++++.++...|+|.+|+.+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 0 000000 01122267899999999999999999999988
Q ss_pred cCCC-ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 307 YDSY-NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 307 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+. +..+|+.+|.||..+|.+++|+.+|++++...|++.++...|+.++.++|++++|.+.++....-+
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 7654 367999999999999999999999999999999999999999999999999999999998877333
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.4e-23 Score=192.81 Aligned_cols=289 Identities=15% Similarity=0.128 Sum_probs=254.3
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
..+.+.+...++.++..++|.+-.+.++..++.+|-+...+-..-.|+..+|+..+=...-.+.++..|+.+..|+..|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 45788899999999999999999999999999999887666554459999999998888888999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
.|...|++.+|..+|. ++..++|.. ..+|...|..+..
T Consensus 321 YYl~i~k~seARry~S-----------------------------------------Kat~lD~~f-gpaWl~fghsfa~ 358 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFS-----------------------------------------KATTLDPTF-GPAWLAFGHSFAG 358 (611)
T ss_pred HHHHhcCcHHHHHHHH-----------------------------------------HHhhcCccc-cHHHHHHhHHhhh
Confidence 9988888888887774 445566776 5667888999999
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 284 (543)
.++.++|+.+|..+-++.|....+...+ |.-|...++++-|...|..|+.+.|.++-+. ..+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYl------gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~------------~El 420 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYL------GMEYMRTNNLKLAEKFFKQALAIAPSDPLVL------------HEL 420 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHH------HHHHHHhccHHHHHHHHHHHHhcCCCcchhh------------hhh
Confidence 9999999999999999999987766666 8899999999999999999999999999874 458
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccC----CC---ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYD----SY---NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
|.+.+..+.|.+|..+|+.++..- +. -...+.+||.++.+++.+++|+.+|++++.+.|.++.++..+|.+|.
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 999999999999999999998432 22 23568999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
.+|+++.|+++|.+++-+.|++..+...|+.+....
T Consensus 501 llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 999999999999999999999999998888665553
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.1e-23 Score=203.93 Aligned_cols=287 Identities=13% Similarity=-0.020 Sum_probs=235.0
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc----hhhHHhHHHHHHHcCCHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSD 104 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 104 (543)
....|...+.+++..+|.++..++.+|..+...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 129 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL 129 (389)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34458888999999999999999999999999999999999999998854322 35788999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 009096 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAI 184 (543)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 184 (543)
|+++++.+|.+..++..++.++...|++++|+..++++++
T Consensus 130 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------------------------------------- 169 (389)
T PRK11788 130 FLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK---------------------------------------- 169 (389)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH----------------------------------------
Confidence 9999999999999999999999999999999988866543
Q ss_pred HcCCCC----CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 185 AIGVDS----SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 185 ~~~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
..|.. ....+..+|.++...|++++|+..++++++..|++.. .++.+|.++...|++++|+..+++++.
T Consensus 170 -~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 170 -LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR------ASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred -hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 0223456778888888888888888888888777644 334448899999999999999999998
Q ss_pred cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 261 LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 261 ~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+|.+.... +..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++
T Consensus 243 ~~p~~~~~~-----------~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 243 QDPEYLSEV-----------LPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HChhhHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888754321 123688999999999999999999999998654 48899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHh
Q 009096 341 IQPNYTKALLRRAVSNEK--LGRWSEAVRDYEALRR 374 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 374 (543)
..|++......++..+.. .|+..+|+..+++.++
T Consensus 311 ~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 311 RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999988665445444422 5688899888887664
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7e-22 Score=179.60 Aligned_cols=298 Identities=16% Similarity=0.131 Sum_probs=245.2
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
|+..++..|.++.+.|....|+..|..++...|-+..+|..|+.+........ ..-..+. .+ .. .-.-
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~---~l~~~l~--~~-~h------~M~~ 230 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS---ILVVGLP--SD-MH------WMKK 230 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH---HHHhcCc--cc-ch------HHHH
Confidence 56778899999999999999999999999999999999999988865432211 1111110 00 10 1112
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH-HHHHH-
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL-VWLLK- 238 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 238 (543)
+-+..++....+.++++..+.......-.....+-...|.+.....++++|+..|+.+.+.+|-..+....+. .++.+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 2244555666688889999998888854455777788899999999999999999999999886533221111 11111
Q ss_pred --------------------------HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 009096 239 --------------------------LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292 (543)
Q Consensus 239 --------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~ 292 (543)
|+.|...++.++|+.+|+++++++|....+|.+ +|.-|..++
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTL------------mGHEyvEmK 378 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTL------------MGHEYVEMK 378 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHH------------hhHHHHHhc
Confidence 788888899999999999999999999999865 699999999
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
+...|++.|++|++++|.+..+|+.+|++|.-++...=|+-+|++|+++.|+++..|..+|.||.++++.++|+++|.++
T Consensus 379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009096 373 RRELPGDNEVAESLHNAQVALKKSRGEFVN 402 (543)
Q Consensus 373 l~~~p~~~~~~~~l~~~~~~l~~~~~~~~~ 402 (543)
+.....+..+...|+++...++...+...+
T Consensus 459 i~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 459 ILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999877665444
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=2.1e-21 Score=200.25 Aligned_cols=345 Identities=14% Similarity=0.032 Sum_probs=247.6
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|...+++++...|.....+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|++.++++.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 33455556666644455555555557777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH-hHHH--------------------------------
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL-LKLQ-------------------------------- 155 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~-~~~~-------------------------------- 155 (543)
..+|.+... ..++.++...++..+|+..+++++. .|+.... ..+.
T Consensus 164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 777765443 4455555556666667777777766 3332221 0000
Q ss_pred ------------------------------H------------------HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 156 ------------------------------S------------------FEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 156 ------------------------------~------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
. ......+...+...+++.+++..|+.+....
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 0 0001112233345566777777777666555
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC---
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--- 264 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--- 264 (543)
.+.+..+....|..|+..++.++|+.+|.+++...|........+.....+-..+...+++++|..++++..+..|-
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 44456677778999999999999999999987765421110001111122255788899999999999998875551
Q ss_pred ---------cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHH
Q 009096 265 ---------NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 265 ---------~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
+++.. .....++..+...|++.+|++.+++.+...|.+..++..+|.++...|.+.+|...+
T Consensus 403 ~~~~~~~~pn~d~~---------~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 403 VYGLPGKEPNDDWI---------EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred ccCCCCCCCCccHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11111 112337888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 336 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
+.+..++|++..+.+.+|.++..+|++.+|....+++++..|+++.+..
T Consensus 474 k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 474 KAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999999999999999999999999997764
No 31
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.2e-24 Score=164.92 Aligned_cols=99 Identities=25% Similarity=0.378 Sum_probs=91.8
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+..+.-+.+++++.||+|+|||+||+||+++.|.++++..+|.| ++|+++|+|+..+++.+|+|..+||+++|+||+++
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 44455556778899999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCC
Q 009096 493 KEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++++|. +.+.++++|++++.
T Consensus 129 d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 129 DRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeecccCCHHHHHHHHHHHhc
Confidence 999999 99999999998753
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=7.3e-24 Score=197.37 Aligned_cols=263 Identities=22% Similarity=0.238 Sum_probs=112.4
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhc--CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISM--SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
.+.+|..++..|++++|++.+++.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 346799999999999999999766544 488889999999999999999999999999999988888888888888 68
Q ss_pred hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCh
Q 009096 129 LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQN 208 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~ 208 (543)
.+++++|+..++++.+. .+ .+..+.....++...+++
T Consensus 90 ~~~~~~A~~~~~~~~~~-----------------------------------------~~--~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER-----------------------------------------DG--DPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred ccccccccccccccccc-----------------------------------------cc--ccchhhHHHHHHHHHhHH
Confidence 88888888877665431 11 122333445566777777
Q ss_pred hHHHHHhhcCCCCC--CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 209 EDADSCLSNMPKFE--HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 209 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
+++...++++.... +.+ ...|...|.++...|+.++|+..|+++++.+|+++.+.. .++.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------------~l~~ 188 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------------ALAW 188 (280)
T ss_dssp HHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------------HHHH
T ss_pred HHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------HHHH
Confidence 77777777754322 222 223455599999999999999999999999999998853 3688
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
++...|+++++.+.+....+..|+++..+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 009096 367 RDYEALRRE 375 (543)
Q Consensus 367 ~~~~~al~~ 375 (543)
..++++++.
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988754
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.1e-21 Score=171.58 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=258.2
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|++.+-.++..+|.+-.+++..|-.|...|+-.-|+..+.+.|++.|+...+...+|.+++++|++++|...|+.++
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 34578888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCh---hHH------------HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 110 RLDPGYN---RAH------------QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 110 ~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
+.+|++. ++. ......+...|++..|+......++....+ +..+..++.+|...|+..
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------a~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------ASLRQARAKCYIAEGEPK 206 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------hHHHHHHHHHHHhcCcHH
Confidence 9999642 222 223344566689999999988887622222 334667889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH------HHHHHHHHHHhhcCh
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL------VWLLKLMFNISELRF 248 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~g~~ 248 (543)
.|+..++.+-++..++ .+.++..+.+++..|+.+.++...+..++++|++..-...+. -.+..+......++|
T Consensus 207 ~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999997666 788889999999999999999999999999999854333221 122236667788999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
.++++..++.++.+|..+.+..-. ...+..++...+++.+|+..+.+++..+|++..++..++.+|+-...|
T Consensus 286 t~cle~ge~vlk~ep~~~~ir~~~--------~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 286 TECLEAGEKVLKNEPEETMIRYNG--------FRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHHHHHHHHHhcCCcccceeeee--------eheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 999999999999999865543211 112567888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 329 ENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
+.|+..|++|.+.++++..+.-.+-
T Consensus 358 D~AI~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHH
Confidence 9999999999999999987765443
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=4.9e-20 Score=190.28 Aligned_cols=352 Identities=10% Similarity=-0.034 Sum_probs=260.5
Q ss_pred ccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 27 SCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
.+....|+..++++++.+|.++.....++..+...|++++|+.++++++...|.....+..+|.++...|++++|++.|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33344678888888888888865555777888888899999999988883333344444445779999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
++++.+|+++.++..++.++...++.++|+..+++++. .+.... +..++..+...++..+|+..++++++
T Consensus 127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---------~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---------YMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH---------HHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 333111 23334555557777779999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhc------------------------------------------------
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSN------------------------------------------------ 217 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~------------------------------------------------ 217 (543)
.+|++ ..++..+..++...|-...|.+...+
T Consensus 198 ~~P~n-~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPTS-EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 99987 67777777777777766555554432
Q ss_pred CCCCCCCCChhHHH-HHHHHHH-----------------------------------HHHHHhhcChHHHHHHHHHHhhc
Q 009096 218 MPKFEHYSPPSQVK-FLVWLLK-----------------------------------LMFNISELRFENAVSSAEKAGLL 261 (543)
Q Consensus 218 ~~~~~~~~~~~~~~-~~~~~~~-----------------------------------a~~~~~~g~~~~A~~~~~~al~~ 261 (543)
++...+..+..... ..+...+ |..|...+++++|+..|+.++.-
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 22211222211000 0111111 66666666667777777666654
Q ss_pred CCCc----HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---------------CChhHHhHHHHHH
Q 009096 262 DYSN----VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS---------------YNSILYCNRAICW 322 (543)
Q Consensus 262 ~p~~----~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~ 322 (543)
.|+. ... .....+..++...++|++|..++++..+..| +...+...++.++
T Consensus 357 ~~~~~~~~~~~----------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 357 DGKTFRNSDDL----------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred cccccCCCcch----------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 4211 111 0012367789999999999999999987544 2356778899999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 323 SKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
...|++.+|.+.+++.+...|.|+..+..+|.++...|++.+|...++.+..++|++..+......+...++.-++
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888887777765443
No 35
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=183.44 Aligned_cols=259 Identities=18% Similarity=0.169 Sum_probs=204.4
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG 130 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (543)
=+..|..+++.|...+|+-+|+.+++.+|.+.++|..||.++...++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 131 QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 131 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
.-.+|+.++.+-+. ..|.. .+...+. ..+++..
T Consensus 368 ~q~~Al~~L~~Wi~-----------------------------------------~~p~y---~~l~~a~---~~~~~~~ 400 (579)
T KOG1125|consen 368 LQNQALKMLDKWIR-----------------------------------------NKPKY---VHLVSAG---ENEDFEN 400 (579)
T ss_pred hHHHHHHHHHHHHH-----------------------------------------hCccc---hhccccC---ccccccC
Confidence 88888887754432 22211 0000000 0000000
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCC--CcHHHHHHHHhHHHHHHHHHHHHHH
Q 009096 211 ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDY--SNVEIASVLTNVKMVVRARTRGNNL 288 (543)
Q Consensus 211 A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~g~~~ 288 (543)
- ..+.+.. .+..-.+.|-.+....| .++++.. .+|.+|
T Consensus 401 ~---------~s~~~~~-------------------~l~~i~~~fLeaa~~~~~~~DpdvQ~------------~LGVLy 440 (579)
T KOG1125|consen 401 T---------KSFLDSS-------------------HLAHIQELFLEAARQLPTKIDPDVQS------------GLGVLY 440 (579)
T ss_pred C---------cCCCCHH-------------------HHHHHHHHHHHHHHhCCCCCChhHHh------------hhHHHH
Confidence 0 0011111 11222344555555566 5566543 379999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 289 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
...|+|++|+++|+.||...|++...|+.||..+..-.+.++|+..|++|+++.|....+++++|.+++.+|.|++|.++
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC----------ChHHHHHHHHHHHHHHhh
Q 009096 369 YEALRRELPG----------DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 369 ~~~al~~~p~----------~~~~~~~l~~~~~~l~~~ 396 (543)
|-.||.+.+. +..+|..|..+...+++.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 9999998775 135788887666655443
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=3e-20 Score=181.85 Aligned_cols=303 Identities=14% Similarity=0.012 Sum_probs=243.6
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN-RAHQRLASLY 126 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (543)
.......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445577888899999999999999999999998888888999999999999999999999999999875 4666679999
Q ss_pred HHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHH
Q 009096 127 FRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA---CKAEAH 202 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~---~~a~~~ 202 (543)
...|+++.|...++++.+ .|+.. ..+...+..+...|++++|+..+.+..+........... .....+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~--------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHK--------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887 34333 235667888899999999999999999875444232211 122222
Q ss_pred HHccChhHHHHHhhcCCCCCCC----CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHY----SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
...+..+++...+..+....|. ++. .+...+..+...|++++|.+.++++++..|++.......
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~------l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~------ 303 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIA------LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL------ 303 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHH------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH------
Confidence 4444555555677777666663 433 333448899999999999999999999999987532100
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh--hHHhHHHHHHHHccCHHHHHHHHH--HHHhhCCCCHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS--ILYCNRAICWSKMGLWENSIEDCN--VALRIQPNYTKALLRRAV 354 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~ 354 (543)
-........++.+.+++.++++++..|+++ .++..+|.++.+.|++++|.++|+ .+++..|++.. +..+|.
T Consensus 304 ----l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ 378 (409)
T TIGR00540 304 ----CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAAD 378 (409)
T ss_pred ----HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHH
Confidence 023344556888999999999999999999 889999999999999999999999 57778887665 559999
Q ss_pred HHHHccCHHHHHHHHHHHHhc
Q 009096 355 SNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~ 375 (543)
++.++|+.++|.++|++++..
T Consensus 379 ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 37
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-20 Score=167.54 Aligned_cols=317 Identities=12% Similarity=-0.015 Sum_probs=263.2
Q ss_pred HHhhHHHhcCCHHHH--HHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Q 009096 53 RAGNEMYRKGNFVEA--LKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG 130 (543)
Q Consensus 53 ~~a~~~~~~g~~~~A--~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (543)
..+......++...| ..++-.-...-|+|...+..+|.|++..|++++|+..|+++..++|....+.-..|.++...|
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence 344444555555544 455566667789999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 131 QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 131 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
+++.-...........+ .....|+-.+...+..++++.|+.+-+++|..+|.+ ...+...|.++..+++.++
T Consensus 281 ~~e~~~~L~~~Lf~~~~-------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVK-------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-HEALILKGRLLIALERHTQ 352 (564)
T ss_pred CHhhHHHHHHHHHhhhh-------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-chHHHhccHHHHhccchHH
Confidence 99876554433332111 112346667777888999999999999999999988 6778889999999999999
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh
Q 009096 211 ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS 290 (543)
Q Consensus 211 A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~ 290 (543)
|+-.|+.+..+.|.+-. .+-.+-.+|...|++.+|...-+.+++..|.+.....++.. -.++..
T Consensus 353 A~IaFR~Aq~Lap~rL~------~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~----------~V~~~d 416 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPYRLE------IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGT----------LVLFPD 416 (564)
T ss_pred HHHHHHHHHhcchhhHH------HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcc----------eeeccC
Confidence 99999999999998844 44444788999999999999999999999998877654310 122333
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
-.--++|.+++++++.++|....+-..++.++...|.++.++..+++.+...|+. ..+..+|.++...+.+.+|.++|.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446899999999999999999999999999999999999999999999998874 678899999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHH
Q 009096 371 ALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 371 ~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
.|+.++|++......+.+.....+
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHhcCccchHHHHHHHHHHhccC
Confidence 999999999999988876655443
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=2.3e-19 Score=169.66 Aligned_cols=330 Identities=14% Similarity=0.027 Sum_probs=267.2
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+...+..+++..|.+-..|...+..-...|..++-..++++++..-|.....|.+.+.-+...|+...|...+..+++.+
T Consensus 535 arAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 535 ARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 33345567788899999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
|++.+.|+.--.+.....+++.|...|.++.. .+... .|+..+.....+++.++|+..++++++..|++
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR---------v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f- 684 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER---------VWMKSANLERYLDNVEEALRLLEEALKSFPDF- 684 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch---------hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-
Confidence 99999999999999999999999999998876 33333 35566666778899999999999999999998
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+|..+|.++.++++.+.|...|...++..|.....|..+ +.+-.+.|+.-.|...++++.-.+|++...|..
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL------akleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL------AKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH------HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 88999999999999999999999999999999997755544 899999999999999999999999999998733
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 351 (543)
.-.+-.+.|+.+.|.....+|++..|.+..+|..-....-+-++-..++. |++....++.++..
T Consensus 759 ------------~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dphVlla 822 (913)
T KOG0495|consen 759 ------------SIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDPHVLLA 822 (913)
T ss_pred ------------HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCchhHHH
Confidence 34566788999999999999999888876666554444444444333333 33334455666666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 352 RAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
.|..+....++++|.++|.++++.+|++.++|..+.+.....+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 6666666666666666666666666666666666666555555
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=2.9e-20 Score=188.77 Aligned_cols=248 Identities=13% Similarity=-0.004 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q 009096 64 FVEALKLYDKAISMSPENAAYRSNRAATLTAL---------GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (543)
+++|+.+|+++++++|+++.++..+|.+|... +++++|+..++++++++|+++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 44555555555555555555555555544422 124555555555555555555555555555444444444
Q ss_pred HHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHH
Q 009096 135 ARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSC 214 (543)
Q Consensus 135 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~ 214 (543)
|+.. |+++++++|++ +.+++.+|.++...|++++|+..
T Consensus 357 A~~~-----------------------------------------~~~Al~l~P~~-~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 357 GSLL-----------------------------------------FKQANLLSPIS-ADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHH-----------------------------------------HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 4333 34455555554 44555566666666666666666
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 009096 215 LSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD-YSNVEIASVLTNVKMVVRARTRGNNLFSSRR 293 (543)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 293 (543)
++++++++|.++...... +.+++..|++++|+..+++++... |+++..+. .+|.++...|+
T Consensus 395 ~~~Al~l~P~~~~~~~~~------~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~------------~la~~l~~~G~ 456 (553)
T PRK12370 395 INECLKLDPTRAAAGITK------LWITYYHTGIDDAIRLGDELRSQHLQDNPILLS------------MQVMFLSLKGK 456 (553)
T ss_pred HHHHHhcCCCChhhHHHH------HHHHHhccCHHHHHHHHHHHHHhccccCHHHHH------------HHHHHHHhCCC
Confidence 666666666653322111 333444566666666666665543 44444321 24555666666
Q ss_pred HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 294 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
+++|...+.++....|.+..++..++..|...|+ .|...+++.++..-..+.-......++.-.|+.+.|..+ +++.
T Consensus 457 ~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 457 HELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhh
Confidence 6666666666555555555555666666555553 444444444433222221122255555555555555554 4444
Q ss_pred h
Q 009096 374 R 374 (543)
Q Consensus 374 ~ 374 (543)
+
T Consensus 534 ~ 534 (553)
T PRK12370 534 N 534 (553)
T ss_pred c
Confidence 3
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=2.6e-21 Score=175.28 Aligned_cols=207 Identities=16% Similarity=0.067 Sum_probs=138.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 009096 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR 247 (543)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 247 (543)
+..|++++|.+.|+.++..+... ..+++++|..+..+|+.++|+.+|-++-.+--++. ..++..+.+|..+.+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il~nn~------evl~qianiye~led 573 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA------EVLVQIANIYELLED 573 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHhhC
Confidence 34455555555555555443322 44455555555555555555555554433322222 223333566666666
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL 327 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 327 (543)
..+|++++.++..+-|+++.+. ..+|..|-+.|+-.+|..++-......|.+.++.-+||..|....-
T Consensus 574 ~aqaie~~~q~~slip~dp~il------------skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAIL------------SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHH------------HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 6666666666666666666553 2356667777777777777767677777777777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 328 WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 328 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
+++|+.+|+++.-+.|+........+.|+.+.|+|.+|.+.|+..-...|++.+....|.++.-.+
T Consensus 642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 889999999999999998888889999999999999999999999999999988887776654444
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=4e-20 Score=181.47 Aligned_cols=345 Identities=13% Similarity=0.063 Sum_probs=268.5
Q ss_pred ccccccccccccccc-CCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH
Q 009096 16 TGNYGHGSIVRSCSS-NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA 94 (543)
Q Consensus 16 ~~~~g~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (543)
...+|.+..+-..+. ..|...+...++.+|.++.+|+.+|.+|-++|+.+++....-.|-.++|++.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 344555555544433 4477778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
+|++++|.-+|.+|++.+|.+....+..+.+|.++|+...|...|.+++....+..+.... ......+..+...++-+
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~--d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE--DLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH--HHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999833344333222 22334466677777779
Q ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHccChhHHHHHhhcCCC----------------------CC--CCC----
Q 009096 175 TVLRETDAAIAIGV-DSSPQLVACKAEAHLKLHQNEDADSCLSNMPK----------------------FE--HYS---- 225 (543)
Q Consensus 175 ~A~~~~~~~l~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------------~~--~~~---- 225 (543)
.|++.++.++.... .....-+..++.+++....++.|......... .. |+.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 99999999888322 12234466778899999998888776654333 00 000
Q ss_pred -Ch-----------------------------hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 226 -PP-----------------------------SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 226 -~~-----------------------------~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
+. .......++..+..+...|++.+|+.+|..+....+......
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v------ 451 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV------ 451 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh------
Confidence 00 000111233448889999999999999999887766554221
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------H
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---------T 346 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~ 346 (543)
|+.+|.+|..+|.+++|+++|++++...|++..+...|+.++.++|+.++|.+.+.+.+.-++.+ .
T Consensus 452 -----w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ 526 (895)
T KOG2076|consen 452 -----WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPER 526 (895)
T ss_pred -----hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHH
Confidence 34589999999999999999999999999999999999999999999999999999877433222 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
.....+..++...|+.++=+..-...+
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456788899999999988444443333
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.8e-20 Score=171.46 Aligned_cols=263 Identities=12% Similarity=0.087 Sum_probs=221.9
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
.+..+..+|-+...+-..-.+++..|+..+-...-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|...
T Consensus 267 t~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 267 TEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred hHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 44566778888877765555999999999988888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
.+|...|..+...|+.++|+.+|..| -++-|..... ..
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tA-----------------------------------------arl~~G~hlP-~L 384 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTA-----------------------------------------ARLMPGCHLP-SL 384 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHH-----------------------------------------HHhccCCcch-HH
Confidence 99999999999999988888877444 3333433222 33
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc----CCCcHHHHHHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL----DYSNVEIASVL 272 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 272 (543)
.+|.-|..+++++-|.+.|.+++.+.|.++.....+ |.+.+..+.|.+|..+|++++.. .++.. .|.-+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El------gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~ 457 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL------GVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPT 457 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh------hheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHH
Confidence 458889999999999999999999999998776666 88999999999999999999832 22222 12211
Q ss_pred HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
+.++|.++.+.+++++|+..|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++.-+--.|
T Consensus 458 --------~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 458 --------LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred --------HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999999997666666
Q ss_pred HHHH
Q 009096 353 AVSN 356 (543)
Q Consensus 353 a~~~ 356 (543)
+.+.
T Consensus 530 ~~ai 533 (611)
T KOG1173|consen 530 KLAI 533 (611)
T ss_pred HHHH
Confidence 6444
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=5.2e-20 Score=171.51 Aligned_cols=124 Identities=17% Similarity=0.119 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHHHHhc---CCc-chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 61 KGNFVEALKLYDKAISM---SPE-NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
.++.+.++..+.+++.. +|. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45778899999999964 333 36789999999999999999999999999999999999999999988888888777
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhh
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 216 (543)
..| +++++++|++ ..++..+|.++...|++++|+..++
T Consensus 119 ~~~-----------------------------------------~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 119 EAF-----------------------------------------DSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred HHH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 665 4556666665 4556666666666666666666666
Q ss_pred cCCCCCCCCC
Q 009096 217 NMPKFEHYSP 226 (543)
Q Consensus 217 ~~~~~~~~~~ 226 (543)
++++.+|+++
T Consensus 157 ~al~~~P~~~ 166 (296)
T PRK11189 157 AFYQDDPNDP 166 (296)
T ss_pred HHHHhCCCCH
Confidence 6666666553
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.2e-20 Score=171.15 Aligned_cols=332 Identities=16% Similarity=0.075 Sum_probs=254.6
Q ss_pred cccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHH
Q 009096 28 CSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107 (543)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (543)
+....|+..+..++..+|.|.-.+.+...++...|+|++|++.-.+.++++|+.+..|..+|..++.+|+|++|+..|.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 33445777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHhC---------------------------------------------------CHHHHH
Q 009096 108 AVRLDPGYNRAHQRLASLYFRLG---------------------------------------------------QVENAR 136 (543)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g---------------------------------------------------~~~~A~ 136 (543)
.++.+|++...+..|+.++.... +...|.
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 99999999888888877762220 011111
Q ss_pred HHhcCC----------C-C--CCCh--------------HH------H----------------------------hHHH
Q 009096 137 HHLCFP----------G-H--HPDP--------------NE------L----------------------------LKLQ 155 (543)
Q Consensus 137 ~~~~~a----------~-~--~~~~--------------~~------~----------------------------~~~~ 155 (543)
..+..+ . . ...| .. . ..-.
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~ 255 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELAT 255 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh
Confidence 111100 0 0 0000 00 0 0002
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCC--CCh
Q 009096 156 SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS------PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY--SPP 227 (543)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 227 (543)
.+..+.+.+..+...|.+.+++....++++.+-... ......+|..|...++++.|+.+|.+++..... ...
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls 335 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS 335 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH
Confidence 233455677888999999999999888887754321 122333566888889999999999998765443 100
Q ss_pred hHH----H--------------HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH
Q 009096 228 SQV----K--------------FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289 (543)
Q Consensus 228 ~~~----~--------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~ 289 (543)
... . ....-..|..++..|+|..|+..|.++++.+|++...+ -++|.+|.
T Consensus 336 ~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY------------sNRAac~~ 403 (539)
T KOG0548|consen 336 KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY------------SNRAACYL 403 (539)
T ss_pred HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH------------HHHHHHHH
Confidence 000 0 00112338999999999999999999999999999875 35899999
Q ss_pred hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
.+|.+..|++..+.+++++|+....|...|.++..+.+|+.|++.|+++++++|++.++.-.+..|...+...+...+..
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754444445555
Q ss_pred HH
Q 009096 370 EA 371 (543)
Q Consensus 370 ~~ 371 (543)
++
T Consensus 484 ~r 485 (539)
T KOG0548|consen 484 RR 485 (539)
T ss_pred Hh
Confidence 55
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.87 E-value=8.1e-19 Score=170.79 Aligned_cols=299 Identities=13% Similarity=0.049 Sum_probs=231.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhH-HHHHHHcCCHHHHHHHHHHHHhcCCCChhHH-HHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNR-AATLTALGRLTEAVSDCEEAVRLDPGYNRAH-QRLAS 124 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~ 124 (543)
.....+..|...+..|+|++|.+...++-+..+ ++..++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 345567888888899999999988887665533 34555555 5565999999999999999999999875443 45589
Q ss_pred HHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 009096 125 LYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK----- 198 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~----- 198 (543)
++...|++++|+..++++.+ .|+... .+...+..+...|+|++|+..+.+..+..+..........
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~--------al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPE--------VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999887 444332 2455677788889999999999999887665433222111
Q ss_pred --HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 199 --AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 199 --a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
........+-+...+.++...+..|+++.....+ +..+...|+.++|...++++++..| ++....
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~------A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~------ 300 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAM------AEHLIECDDHDTAQQIILDGLKRQY-DERLVL------ 300 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHH------
Confidence 1122223334555566666666666676554444 9999999999999999999999554 444321
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
.......++.+++++..++.++.+|+++..+..+|.++...+++++|.+.|+++++..|++. .+..++.++
T Consensus 301 --------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~ 371 (398)
T PRK10747 301 --------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADAL 371 (398)
T ss_pred --------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHH
Confidence 22233559999999999999999999999999999999999999999999999999999864 466899999
Q ss_pred HHccCHHHHHHHHHHHHhcC
Q 009096 357 EKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~ 376 (543)
.++|+.++|..+|++++.+.
T Consensus 372 ~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999998864
No 46
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-21 Score=147.37 Aligned_cols=86 Identities=33% Similarity=0.532 Sum_probs=82.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 504 (543)
.++.++++|+++|||||+.+.|.+.+++.+|+++.|+++|+|+.+++++.++|.++||++++++|+.+.+++|.++++++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~ 99 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELE 99 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 009096 505 DSANLA 510 (543)
Q Consensus 505 ~~~~~~ 510 (543)
+.|+++
T Consensus 100 ~~i~~~ 105 (106)
T KOG0907|consen 100 KKIAKH 105 (106)
T ss_pred HHHHhc
Confidence 998764
No 47
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=7.7e-19 Score=184.59 Aligned_cols=404 Identities=13% Similarity=0.010 Sum_probs=258.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcC--Cc----------------------------------chhhHHhHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMS--PE----------------------------------NAAYRSNRAA 90 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~----------------------------------~~~~~~~la~ 90 (543)
+...|..+...+.+.|++++|+..|+++++.. |+ +..++..+..
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 44456666666666666666666666655432 11 1223344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhh
Q 009096 91 TLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAES 167 (543)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~ 167 (543)
.|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|+++.+ .++.. .+......+
T Consensus 268 ~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~---------t~~~ll~a~ 335 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF---------TFSIMIRIF 335 (697)
T ss_pred HHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHH
Confidence 5666666666666665542 33556666777777777777777777766543 22222 244555666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 009096 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR 247 (543)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 247 (543)
.+.|++++|.+.+..+++.+......++..+...|.+.|++++|...|++..+. +. ..|..+...|...|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~------~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NL------ISWNALIAGYGNHGR 406 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---Ce------eeHHHHHHHHHHcCC
Confidence 778888888888888888765555677788889999999999999999888652 22 234445778899999
Q ss_pred hHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--CChhHHhHHHHHHH
Q 009096 248 FENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS--YNSILYCNRAICWS 323 (543)
Q Consensus 248 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 323 (543)
.++|++.|++..+ ..|+..... .+-.++.+.|..++|.++|+...+..+ .+...|..+..+|.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~-------------~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFL-------------AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHH-------------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999875 456554432 245668889999999999998876432 23567888999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhc
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNN 403 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~ 403 (543)
+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.+++.|++......+..+....++-.+.....
T Consensus 474 r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 474 REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988764 2334 45678888899999999999999999999999998777666666555444332221111
Q ss_pred ccCCCCeEEeehhhhhhhccCCCCceeeeeeC--CCCccccchhHhHHHHHhhC------CCeEEEEEeCcC--------
Q 009096 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVNLLCVRY------PYVHFFKVDVEE-------- 467 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~~l~~~~------~~~~~~~~d~~~-------- 467 (543)
..+...-......- .-+.-.+. +-.|.+ ..++.+..+...++++..+. |+..++..|+++
T Consensus 552 ~~m~~~g~~k~~g~---s~i~~~~~-~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~ 627 (697)
T PLN03081 552 ETLKRKGLSMHPAC---TWIEVKKQ-DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGR 627 (697)
T ss_pred HHHHHcCCccCCCe---eEEEECCe-EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHH
Confidence 11100000000000 00000111 112333 23445555555555554432 566666677663
Q ss_pred --cHHHHHHcCCCccc---EEEEEECCe
Q 009096 468 --SLAIAKSEGVRTVP---TFKIYKNGE 490 (543)
Q Consensus 468 --~~~~~~~~~v~~~P---t~~~~~~g~ 490 (543)
++.+|-.||+..+| +|.++||=+
T Consensus 628 ~hsekla~a~~l~~~~~~~~i~i~knlr 655 (697)
T PLN03081 628 YHSEKLAIAFGLINTSEWTPLQITQSHR 655 (697)
T ss_pred hccHHHHHHhhCccCCCCCeEEEecCCE
Confidence 35689999999888 688888844
No 48
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.86 E-value=1.4e-21 Score=148.53 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=74.7
Q ss_pred hhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 417 EKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 417 ~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+.+++.+. .+++++|+||++||++|+.|.|.+++++.++++ +.|++||+|++++++.+|+|.++||+++|+||+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 34455554 577999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred EEcCC
Q 009096 494 EMINP 498 (543)
Q Consensus 494 ~~~g~ 498 (543)
+..|.
T Consensus 83 ~~~G~ 87 (114)
T cd02954 83 IDLGT 87 (114)
T ss_pred EEcCC
Confidence 99883
No 49
>PHA02278 thioredoxin-like protein
Probab=99.86 E-value=3e-21 Score=146.49 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=82.7
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCc----HHHHHHcCCCcccEEEEEECC
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEES----LAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~----~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+.+.|.+.+..+++++|+||++||++|+.+.|.++++++++. .+.|+++|+|.+ ++++++|+|.++||+++|+||
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 456777878889999999999999999999999999998854 478999999976 689999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHH
Q 009096 490 EKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 490 ~~~~~~~g~-~~~~~~~~ 506 (543)
+.+.++.|. +.+++.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999997 88888765
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=3.3e-18 Score=161.99 Aligned_cols=304 Identities=15% Similarity=0.042 Sum_probs=208.5
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC---cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP---ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+-+.|+..|..+-..|-.-.+..+....|.+-- +.-..|..-+..+.+.+.++=|...|..+++..|.....|...+
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~ 557 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA 557 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 566777777777777777766666666665422 23456666777777777777777777777777777777777777
Q ss_pred HHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
..-..-|..++-...|++++. .|.... .|+..+......|+...|...+.++++.+|++ ..+|+....+.
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~--------lwlM~ake~w~agdv~~ar~il~~af~~~pns-eeiwlaavKle 628 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEI--------LWLMYAKEKWKAGDVPAARVILDQAFEANPNS-EEIWLAAVKLE 628 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchh--------HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc-HHHHHHHHHHh
Confidence 776667777776677777666 333222 24445555566677777777777777777764 66666666677
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
....+++.|..+|.++....|.. ..|+-.+.+...+++.++|+.+++++++..|+....|.+
T Consensus 629 ~en~e~eraR~llakar~~sgTe-------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm----------- 690 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGTE-------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM----------- 690 (913)
T ss_pred hccccHHHHHHHHHHHhccCCcc-------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH-----------
Confidence 77777777777777776666554 233333666667777777777777777777777766533
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRW 362 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 362 (543)
+|+++.++++.+.|.+.|...++..|....+|..++.+-.+.|+.-.|...++++.-.+|++...|...-..-.+.|+.
T Consensus 691 -lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 691 -LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred -HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 5777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCC
Q 009096 363 SEAVRDYEALRRELPG 378 (543)
Q Consensus 363 ~~A~~~~~~al~~~p~ 378 (543)
+.|.....+|++-.|+
T Consensus 770 ~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 770 EQAELLMAKALQECPS 785 (913)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 7777777777766653
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=2.5e-19 Score=173.10 Aligned_cols=321 Identities=14% Similarity=0.013 Sum_probs=217.5
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
+...++.+.+.+|.|+.+.+.++..|..+++.+.|....+++++.++ +++.+|..++.++...+++.+|+...+.++.-
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34445566666777777777777777777777777777777777743 44667777777777777777777777777777
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
.|+|.........+-...++.++|+..+...+. ...+............-..+.......+..+|+..+.++.
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls----- 617 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS----- 617 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-----
Confidence 777666666666666666777777666544432 1111110000011111111111111112222222222211
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCC-CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMP-KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
+.+-.+.....-... +.+.. ...|+.. .......|...+..+...++.++|..++.++-.++|.....
T Consensus 618 ---------~l~a~~~~~~~se~~-Lp~s~~~~~~~~~-~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~ 686 (799)
T KOG4162|consen 618 ---------SLVASQLKSAGSELK-LPSSTVLPGPDSL-WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV 686 (799)
T ss_pred ---------HHHHhhhhhcccccc-cCcccccCCCCch-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH
Confidence 111111111111111 22221 1222322 22334578888999999999999999999999999887776
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHH--HHHHHHhhCCCCH
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE--DCNVALRIQPNYT 346 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~ 346 (543)
+ +..|..+...|++.+|.+.|..++.++|+++.....+|.++.+.|+...|.. .+..+++++|.++
T Consensus 687 ~------------~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 687 Y------------YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred H------------HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 5 3479999999999999999999999999999999999999999999988888 9999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++|+.+|.++.+.|+.++|.++|..|+++.+.+|-
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999988774
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=8.6e-21 Score=176.71 Aligned_cols=258 Identities=17% Similarity=0.070 Sum_probs=120.4
Q ss_pred cCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHH
Q 009096 77 MSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL 154 (543)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 154 (543)
..|. ...+.+|.+++..|++++|++.+++.+.. .|+++..|..+|.+...++++++|+..|++++.
T Consensus 5 ~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~---------- 72 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA---------- 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 4454 23346688888888888888888665443 477888888888888888888888888776654
Q ss_pred HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 155 QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
.++.. +..+..++.+ ...+++++|+..+.+..+..++. ....
T Consensus 73 -------------------------------~~~~~-~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~~l~---- 114 (280)
T PF13429_consen 73 -------------------------------SDKAN-PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-RYLL---- 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------ccccc-cccccccccc-ccccccccccccccccccccccc-chhh----
Confidence 22221 3334445555 68899999999999988766543 2222
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcC--CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLD--YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
....++...++++++...++++.... +.++..+. .+|.++.+.|++++|+..|+++++.+|+++
T Consensus 115 --~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 115 --SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL------------ALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH------------HHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred --HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 22667889999999999999987654 45555543 379999999999999999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
.++..++.++...|+++++...++......|+++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...++.+...
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999988877
Q ss_pred HHhhhh
Q 009096 393 LKKSRG 398 (543)
Q Consensus 393 l~~~~~ 398 (543)
.++...
T Consensus 261 ~g~~~~ 266 (280)
T PF13429_consen 261 AGRKDE 266 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 766544
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=9.5e-19 Score=177.69 Aligned_cols=238 Identities=12% Similarity=-0.030 Sum_probs=201.1
Q ss_pred hHHhHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 84 YRSNRAATLTAL---GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 84 ~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
.++..|..+... +++++|+..|+++++++|+++.+|..+|.++..++....
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-------------------------- 313 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-------------------------- 313 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC--------------------------
Confidence 355667655443 457899999999999999999999999998876543110
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (543)
....+++++|+..++++++++|++ +.++..+|.++...|++++|+..|+++++++|++...+. .+|.
T Consensus 314 ------~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~------~lg~ 380 (553)
T PRK12370 314 ------FDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKY------YYGW 380 (553)
T ss_pred ------cccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH------HHHH
Confidence 113456788999999999999988 788899999999999999999999999999999966544 4499
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCChhHHhHHH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD-SYNSILYCNRA 319 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 319 (543)
++...|++++|+..++++++++|.++..... ++.+++..|++++|+..+++++... |+++.++.++|
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~------------~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTRAAAGIT------------KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhhHHH------------HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 9999999999999999999999998765322 3556777899999999999999875 78899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 320 ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
.++..+|++++|+..+.++....|.+..++..++..|...|+ +|...+++.++
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999885 67666666555
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=4.8e-19 Score=173.39 Aligned_cols=288 Identities=13% Similarity=0.039 Sum_probs=230.5
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-hhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
.|.+.+.+.....|.....+...|..+.++|+++.|..++.++.+..|++. .+....+.++...|++++|+..+++.++
T Consensus 102 ~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~ 181 (409)
T TIGR00540 102 KAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLE 181 (409)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355555566667777788888899999999999999999999999999875 4666679999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCC--CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHH--PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV 188 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 188 (543)
..|+++.++..++.++...|++++|...+.+..+. .++........ ..+ ......+..+++...+.++....|
T Consensus 182 ~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~----~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 182 MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAE----IGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHH----HHHHHHHHHhcCHHHHHHHHHHCC
Confidence 99999999999999999999999999999888862 33332211111 111 111233444555667777887777
Q ss_pred C---CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 189 D---SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 189 ~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
. ..+.++..++..+...|++++|...++++++..|++...... ..........++.+.+++.++++++..|++
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~----~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP----LCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH----HHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 4 358899999999999999999999999999999998642211 111334455688899999999999999999
Q ss_pred H--HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 266 V--EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYG--EGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 266 ~--~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+ ... ..+|.++++.|+|++|.++|+ .+++..|+... +..+|.++.++|+.++|.+++++++..
T Consensus 333 ~~~~ll------------~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 333 PKCCIN------------RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hhHHHH------------HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9 543 237999999999999999999 57788887655 559999999999999999999998754
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=1.2e-18 Score=162.41 Aligned_cols=210 Identities=12% Similarity=-0.036 Sum_probs=158.3
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHH
Q 009096 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKL 239 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a 239 (543)
++.+|..+...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..|+++++++|++.. ++.++|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~------a~~~lg 139 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------AYLNRG 139 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHH
Confidence 3444444445555555556667888888887 889999999999999999999999999999999865 455559
Q ss_pred HHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHH
Q 009096 240 MFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRA 319 (543)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 319 (543)
.++...|++++|+..|+++++.+|+++... .+ .......+++++|+..|.+++...+... |. .+
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~------------~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~ 203 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRA-LW------------LYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WN 203 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HH------------HHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HH
Confidence 999999999999999999999999997421 11 2234457889999999988775543322 22 46
Q ss_pred HHHHHccCHHHH--HHHH----HHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Q 009096 320 ICWSKMGLWENS--IEDC----NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP-GDNEVAESLHNAQVA 392 (543)
Q Consensus 320 ~~~~~~g~~~~A--~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 392 (543)
.++..+|+...+ +..+ +...++.|+..++|+++|.++..+|++++|+.+|+++++++| +..+....+......
T Consensus 204 ~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 204 IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 666667776443 3222 233356677889999999999999999999999999999997 666666555544444
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1.7e-19 Score=157.03 Aligned_cols=266 Identities=16% Similarity=0.104 Sum_probs=211.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC---CC-------ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHH
Q 009096 90 ATLTALGRLTEAVSDCEEAVRLD---PG-------YNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFE 158 (543)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~ 158 (543)
.+++..++...|-......++++ |. +..--..+|.||.++|-+.+|.+.++.+++ .+.++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dT-------- 258 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDT-------- 258 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhH--------
Confidence 45556667766665555554432 11 122234578888888888888888877776 344332
Q ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 159 KHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+..++.+|.+..+.+.|+..+.+.++..|.+ ...+...+.++..++++++|.++|+.+++.+|.+.+....+
T Consensus 259 -fllLskvY~ridQP~~AL~~~~~gld~fP~~-VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAci------ 330 (478)
T KOG1129|consen 259 -FLLLSKVYQRIDQPERALLVIGEGLDSFPFD-VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACI------ 330 (478)
T ss_pred -HHHHHHHHHHhccHHHHHHHHhhhhhcCCch-hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeee------
Confidence 4556667777778888888888888888876 56677789999999999999999999999999986654444
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--C-ChhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS--Y-NSILY 315 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~ 315 (543)
|.-|+-.++.+-|+.+|++.+++.-.+++.+ .++|.+.+..++++-++..|++++.... + -+++|
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf------------~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW 398 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELF------------CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVW 398 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHH------------hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhh
Confidence 7778889999999999999999998888874 4579999999999999999999987643 2 36899
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
+|+|.+....||+..|..+|+-++..+|++.+++.++|.+-.+.|+.++|..++..|-...|+-.+..
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988755544
No 57
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.4e-20 Score=163.32 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=93.4
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+.++++.++-..++. ...||+|+||+|||++|+.+.|.+++++.+|.+ +.+++||||+.+.|+.+|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 455555555555553 356999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
++|++++-+.|. +.++|++||+++.+.
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999 888999999999876
No 58
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.83 E-value=5e-20 Score=142.92 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=87.2
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCcc--cc--chhHhHHHHHhhC--CC-eEEEEEeCcCcHHHHHHcCCCccc
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEK--CE--EISPFVNLLCVRY--PY-VHFFKVDVEESLAIAKSEGVRTVP 481 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~--c~--~~~p~l~~l~~~~--~~-~~~~~~d~~~~~~~~~~~~v~~~P 481 (543)
+..++ .++|++.+ ++..+++++||++||++ |+ ++.|.+.++++++ ++ +.|++||+|++++++++|||+++|
T Consensus 11 v~~lt-~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 11 VIDLN-EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred eeeCC-hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 33444 46666655 55779999999999988 99 9999999999998 54 999999999999999999999999
Q ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|+++|+||+++. +.|. +++.|.++|++++
T Consensus 90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999987 8898 9999999999764
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.8e-19 Score=159.79 Aligned_cols=280 Identities=18% Similarity=0.139 Sum_probs=238.7
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
.|++.+..++.+.|.++..|...+..++..|+|++|.-..++.++++|.....+...+.|+..+++..+|...++
T Consensus 67 nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~----- 141 (486)
T KOG0550|consen 67 NALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK----- 141 (486)
T ss_pred HHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh-----
Confidence 366777789999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
+..++ ....|+..+++.+. ...+ +.....-+..+.++...+++++|...-...+++++.+
T Consensus 142 ---~~~~~-----------~~anal~~~~~~~~s~s~~-----pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 142 ---SKQAY-----------KAANALPTLEKLAPSHSRE-----PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred ---hhhhh-----------HHhhhhhhhhcccccccCC-----chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 11111 22344555555554 1111 2233445667788889999999999999999999887
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhH------HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ------VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
...++.+|.++....+.+.|+..|++++.++|+..... ..+..|-..|.-.++.|++.+|.+.|..+|.++|+
T Consensus 203 -~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 203 -AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred -hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 77788889999999999999999999999999985432 33456777799999999999999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 265 NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
+......+ |.+++.+..++|+.++|+...+.+++++|....++...|.|+..+++|++|.+.|+++++...+
T Consensus 282 n~~~nakl--------Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 282 NKKTNAKL--------YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccchhHHH--------HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 87654433 4578999999999999999999999999999999999999999999999999999999998766
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.82 E-value=8.9e-18 Score=159.38 Aligned_cols=347 Identities=12% Similarity=0.040 Sum_probs=235.4
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
.++.++..|.+++.+-..|..+...|+-++|..+...++..++.+...|.-+|.++....+|++|+++|+.|+.++|+|.
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 44555667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC---CCC---
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG---VDS--- 190 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~--- 190 (543)
..|..++.+..++++++.....-.+.++ ..+..-..|+..+..+.-.|++..|....+...+.. |+.
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLq-------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQ-------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 7777777777777777776665544443 122223447777777888888888887777666554 221
Q ss_pred -CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 191 -SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 191 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
...........+...|.+++|++.+...-.. ....+......+.++..++++++|...|...+..+|++...+
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 1122333555666777777777776654322 222233344559999999999999999999999999999877
Q ss_pred HHHHhHHH-HHH-------HHH--------------HHHHHHhcCCHHHHHH----------------------------
Q 009096 270 SVLTNVKM-VVR-------ART--------------RGNNLFSSRRYSEACS---------------------------- 299 (543)
Q Consensus 270 ~~l~~~~~-~~~-------~~~--------------~g~~~~~~~~~~~A~~---------------------------- 299 (543)
..+..... ... ++. ++.....-.++.+.+.
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh
Confidence 66544321 000 000 0000000011111111
Q ss_pred -HHHHHh-------cc----C--------CCC--hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 300 -AYGEGL-------KY----D--------SYN--SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 300 -~~~~al-------~~----~--------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
..++.+ .- + |.. .+.++.++.-+...|+++.|..+.+.|+...|.-++.+...|+++.
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 111111 10 1 111 2455668888999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
..|++++|..+++.+.++|-.|..+...-++-....+..
T Consensus 417 H~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred hcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 999999999999999999988887775555544444333
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=7.1e-18 Score=153.23 Aligned_cols=299 Identities=13% Similarity=0.058 Sum_probs=256.2
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHc--CCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTAL--GRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
|.-.+.-...+-.++++|+++.|++.++-.-+.+... ..+-.+|...++.+ .++..|..+...++..+..++.+..+
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 3344555678889999999999999988766655433 34556676666664 47899999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA 201 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~ 201 (543)
.|.+-+..|++++|.+.|++++.... ...+++++.+..+..+|+.++|+.+|-+.-.+--++ ..++..++.+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn-~evl~qiani 567 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-AEVLVQIANI 567 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 99999999999999999999986222 235678999999999999999999998876654444 7889999999
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHH
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 281 (543)
|..+.+..+|++++.++..+-|+++.....+ |.+|-+.|+-.+|.+++-...+..|.+.+...+
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl------~dlydqegdksqafq~~ydsyryfp~nie~iew---------- 631 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKL------ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW---------- 631 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHH------HHHhhcccchhhhhhhhhhcccccCcchHHHHH----------
Confidence 9999999999999999999999998877666 999999999999999999999999999887543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|+.|.+.|+..-...|.+.+.+..+.++.-.+|-
T Consensus 632 --l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 632 --LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 577889999999999999999999999988888999999999999999999999999999999999999999887774
Q ss_pred HHHHHHHHH
Q 009096 362 WSEAVRDYE 370 (543)
Q Consensus 362 ~~~A~~~~~ 370 (543)
. +|.++-+
T Consensus 710 ~-d~key~~ 717 (840)
T KOG2003|consen 710 K-DAKEYAD 717 (840)
T ss_pred h-hHHHHHH
Confidence 3 3444433
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=2.3e-18 Score=143.45 Aligned_cols=211 Identities=17% Similarity=0.089 Sum_probs=185.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
-..+...+|..|++.|++..|...++++|+.+|++..+|..+|.+|...|+.+.|-+.|++|++++|++.+++++.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
+.+|++++|...|++++..|.-... ...+-+.+.+..+.|+.+.|...|+++++.+|+. +.....++..++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~-----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~ 187 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEP-----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAG 187 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCc-----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcc
Confidence 9999999999999999984443321 3457888999999999999999999999999998 566777899999999
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
++-.|...+++.....+-.... +..-..+....|+-+.+..+=....+..|...+..
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~s------L~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAES------LLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred cchHHHHHHHHHHhcccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999988777644332 22225677888999998888888888999887764
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=157.56 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=217.3
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKH 160 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~ 160 (543)
.+--..+|.||+.+|.+.+|.+.++.+++..| .++.+..|+.+|.+..+...|+..|.+.+. .|.. +..+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~--------VT~l 293 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD--------VTYL 293 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch--------hhhh
Confidence 34446789999999999999999999999876 578889999999999999999999988887 3322 2346
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (543)
...+.++..++++++|+++|+.+++.+|.+ .++....|.-|+..++.+-|+.+|+++++..-.+++...++ |.
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni------gL 366 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPIN-VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI------GL 366 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH------HH
Confidence 778888999999999999999999999887 55566678889999999999999999999999988766666 99
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAI 320 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 320 (543)
+.+..++++-++..|++++....+...+...| +++|.+....|++..|..+|+-++..+|++.+++.|||.
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW---------YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTATQPGQAADVW---------YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCcchhhhhh---------hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 99999999999999999998776555544444 558999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+-.+.|+.++|..+++.+-...|+-.+..++++.+-
T Consensus 438 L~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 999999999999999999999999888888776543
No 64
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.82 E-value=7e-20 Score=141.18 Aligned_cols=93 Identities=24% Similarity=0.296 Sum_probs=83.6
Q ss_pred hhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH---HHHHHcCCCcccEEEEEECCeE
Q 009096 417 EKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL---AIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 417 ~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~---~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
+.+.+.+. .+++++|+||++||++|+.+.|.+++++++++++.|+++|+|++. +++++|+|.++||+++|+||+.
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 45555553 378999999999999999999999999999988999999999874 8999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHh
Q 009096 492 LKEMINPSHQFLEDSANL 509 (543)
Q Consensus 492 ~~~~~g~~~~~~~~~~~~ 509 (543)
+.++.|..++++++.|..
T Consensus 84 v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 84 IHEEEGIGPDELIGDVLY 101 (103)
T ss_pred EEEEeCCCHHHHHHHHHh
Confidence 999999988999888764
No 65
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.82 E-value=9.5e-20 Score=137.32 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=83.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCC--CccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEAS--SEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
+...|++.++.++.+++.||++| ||+|+.+.|.|++++++|++ +.|+++|++++++++.+|+|+++||+++|+||++
T Consensus 16 ~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~ 95 (111)
T cd02965 16 DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRY 95 (111)
T ss_pred ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEE
Confidence 34566677788999999999997 99999999999999999988 8899999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHH
Q 009096 492 LKEMINP-SHQFLED 505 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~ 505 (543)
+.+..|. +.+++..
T Consensus 96 v~~~~G~~~~~e~~~ 110 (111)
T cd02965 96 VGVLAGIRDWDEYVA 110 (111)
T ss_pred EEEEeCccCHHHHhh
Confidence 9999998 8888753
No 66
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.82 E-value=1.2e-19 Score=139.76 Aligned_cols=97 Identities=19% Similarity=0.341 Sum_probs=89.2
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.+.+...+..+++++++||++||++|+.+.|.+++++.++++ +.|..+|+| .++++++|+|.++||+++|+||+
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 456788888888899999999999999999999999999999963 789999999 77899999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhc
Q 009096 491 KLKEMINPSHQFLEDSANLA 510 (543)
Q Consensus 491 ~~~~~~g~~~~~~~~~~~~~ 510 (543)
++.+..|.+++.+.++|+++
T Consensus 83 ~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 83 LVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EEEEEecCChHHHHHHHhhC
Confidence 99999999999999999863
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=2e-17 Score=161.02 Aligned_cols=271 Identities=12% Similarity=0.014 Sum_probs=209.9
Q ss_pred HHHHHHH-hhHHHhcCCHHHHHHHHHHHHhcCCcchhhH-HhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 48 AEEVKRA-GNEMYRKGNFVEALKLYDKAISMSPENAAYR-SNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 48 ~~~~~~~-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
+..++.+ +....+.|+++.|..+|.++.+.+|++..+. ...+.++...|++++|+..++++.+.+|+++.++..++.+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4444444 5666999999999999999999999885443 4559999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
|...|++++|+..+.++.+ ..++.....+. ...+..+........+-+.....++..-...|++ +.+...++..+.
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~-~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~-~~~~~~~A~~l~ 274 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE-QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ-VALQVAMAEHLI 274 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC-HHHHHHHHHHHH
Confidence 9999999999988887776 22233222111 1112222222222334444444444443444444 788899999999
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|+.++|...++++++..++. .... .......++.+++++..++.++.+|+++.....
T Consensus 275 ~~g~~~~A~~~L~~~l~~~~~~-~l~~--------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~------------ 333 (398)
T PRK10747 275 ECDDHDTAQQIILDGLKRQYDE-RLVL--------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWST------------ 333 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCH-HHHH--------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHH------------
Confidence 9999999999999999954433 2111 112335599999999999999999999987643
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+|.++...++|++|.+.|+++++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6999999999999999999999999985 446689999999999999999999998764
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=4.6e-17 Score=142.00 Aligned_cols=279 Identities=14% Similarity=0.025 Sum_probs=210.6
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHH
Q 009096 86 SNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCA 165 (543)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (543)
+..|.-+.-.++.++|+..|..+++.+|...+++..||.++...|..+.|+..-+..++.|+-..- ....+...+|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~---qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE---QRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHH
Confidence 344555556667777777777777777777777777777777777777777766666654444332 23445666777
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
.|...|-++.|...|...... |.....+...+..+|....+|++|+..-++..+..+........ ..+..++..+...
T Consensus 116 Dym~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-qfyCELAq~~~~~ 193 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-QFYCELAQQALAS 193 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-HHHHHHHHHHhhh
Confidence 777777777777777776654 45556777778888888888888888888888887776433221 2344457788888
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-hhHHhHHHHHHHH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-SILYCNRAICWSK 324 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 324 (543)
.+.+.|...+.++++.+|++..+... +|.+....|+|+.|++.++.+++.+|+. +++.-.|..||.+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~------------lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASII------------LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhh------------hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999877644 6999999999999999999999999987 5788889999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 325 MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 325 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+|+.++.+..+.++.+..++ +++-..++..-....=.+.|..++.+-+...|.-...
T Consensus 262 lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred hCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 99999999999999998876 4556667777777777888888888888888864443
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=1.2e-17 Score=139.13 Aligned_cols=211 Identities=17% Similarity=0.090 Sum_probs=154.2
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
....+.+|..|...|++..|...++++++.+|+. ..+|..++.+|...|+.+.|.+.|+++++++|++.+...++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY---- 109 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY---- 109 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh----
Confidence 4456677777778888888888888888887776 66777777778888888888888888877777777766665
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHh
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYC 316 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 316 (543)
|..++.+|++++|...|++++. +|..+.....+ .++|.|..+.|+++.|.++|+++++.+|+.+....
T Consensus 110 --G~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~---------eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 110 --GAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTL---------ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred --hHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhh---------hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 6677777777777777777764 34333332222 23677777777777777777777777777777777
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 317 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
.++..++..|+|-.|..++++...-.+-..+.+.....+....|+-+.|-++=.+.....|..++...
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 77777777777777777777777776666677766677777777777777777777777777766553
No 70
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.81 E-value=8.6e-20 Score=144.52 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=90.9
Q ss_pred Eeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEE-EEE
Q 009096 412 EISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFK-IYK 487 (543)
Q Consensus 412 ~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~-~~~ 487 (543)
.+.+...+++.+ +.+++++++|+++||+||+.+.|.|+++++++++ +.|++||+|+++++++.|+|.+.||++ +|+
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 345667777777 3578999999999999999999999999999998 888999999999999999999887666 999
Q ss_pred CCe-EEEEEcC--------C-CHHHHHHHHHhcCCCCC
Q 009096 488 NGE-KLKEMIN--------P-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 488 ~g~-~~~~~~g--------~-~~~~~~~~~~~~~~~~~ 515 (543)
||+ .+++.+| . +++++.+.++.......
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 999 8999999 6 89999999998765443
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=4.5e-17 Score=157.66 Aligned_cols=345 Identities=17% Similarity=0.055 Sum_probs=275.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--PGYNRAHQRLA 123 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (543)
.++..|-.+...+...|+|+.+.+.|++++...-...+.|+.++.+|...|.-..|+...+..+... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4777888888889999999999999999998887888999999999999999999999999999998 77777766665
Q ss_pred H-HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh-----------hhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 124 S-LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES-----------RKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 124 ~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
. |+.+.+.+++++++-.+++......... .....+...|.+| .+.....+++..++++++.+|.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~--l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d- 477 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSH--LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD- 477 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhh--hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 5 4567799999999998887611111000 0111122222222 12234567889999999999988
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH--
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA-- 269 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-- 269 (543)
+.+.+.++.-|...++.+.|....+++++.++.+.. .+|..++.++...+++.+|+...+.++...|+|....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~-----~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA-----KAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH-----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 577777899999999999999999999999666533 3555568889999999999999999988887732110
Q ss_pred ----------------------HHHH----------hH------------------------------------------
Q 009096 270 ----------------------SVLT----------NV------------------------------------------ 275 (543)
Q Consensus 270 ----------------------~~l~----------~~------------------------------------------ 275 (543)
.+|. +.
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0011 00
Q ss_pred ---------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 276 ---------------KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 276 ---------------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
....-+...+..+...++-++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00001334677788888899999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVR--DYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|..++.+...++..++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 999999999999999999999888888 9999999999999999999999988876654
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=5.3e-18 Score=154.20 Aligned_cols=207 Identities=18% Similarity=0.109 Sum_probs=180.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
+..+..++.+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
++...|++++|+..+.+++..+... .....+..++.++...|++++|...+.+++...|+. ...+..++.++..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~ 181 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYP-----QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-PESLLELAELYYL 181 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-hHHHHHHHHHHHH
Confidence 9999999999999999998632111 112346678899999999999999999999999886 6778889999999
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCC
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDY 263 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 263 (543)
.|++++|+..+++++...|.++.... ..+.++...|+.++|..+.+.+....|
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLW------LGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999988766544332 348889999999999998887766543
No 73
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=4.6e-17 Score=150.90 Aligned_cols=250 Identities=14% Similarity=-0.016 Sum_probs=187.0
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+...+++-.+-.++...+++++|+..+.++|+++|++..+|..++.++..+| ++++|+..+.++++.+|++..+|.
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 3345556666566666778899999999999999999999999999999999998 689999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.++.++..+|+.. +++++..++++++.+|.+ .
T Consensus 111 ~R~~~l~~l~~~~---------------------------------------~~~el~~~~kal~~dpkN-y-------- 142 (320)
T PLN02789 111 HRRWLAEKLGPDA---------------------------------------ANKELEFTRKILSLDAKN-Y-------- 142 (320)
T ss_pred HHHHHHHHcCchh---------------------------------------hHHHHHHHHHHHHhCccc-H--------
Confidence 9998877665420 112333445555555544 2
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
.+|..++.++...|++++|++.+.++++.+|.+..+|..
T Consensus 143 --------------------------------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~--------- 181 (320)
T PLN02789 143 --------------------------------HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ--------- 181 (320)
T ss_pred --------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH---------
Confidence 344555666666666777777777777777777666532
Q ss_pred HHHHHHHHHhc---CC----HHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 281 ARTRGNNLFSS---RR----YSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 281 ~~~~g~~~~~~---~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
++.++... |. .++++++..++|..+|++..+|..++.++.. +++..+|++.+.+++..+|+++.++
T Consensus 182 ---R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 182 ---RYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred ---HHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 34444333 22 3578888899999999999999999999988 5567889999999999999999999
Q ss_pred HHHHHHHHHcc------------------CHHHHHHHHHHHHhcCCCChHHH
Q 009096 350 LRRAVSNEKLG------------------RWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 350 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
-.++.+|.... ..++|.+.++..-+.+|--...|
T Consensus 259 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 259 SDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 99999998632 23567776666655555444444
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.4e-17 Score=151.48 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=170.5
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
...+..++..+...|++++|+..++++++.+|.. ...+..+|.++...|++++|+..++++++..|.+... +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~ 103 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV------LN 103 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------HH
Confidence 4557788888999999999999999999988876 6778888999999999999999999999988887543 33
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCC--CcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDY--SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
..|.++...|++++|+..+++++...+ ..... +..+|.++...|++++|...+.++++.+|+++.+
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS------------LENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 448889999999999999999987532 22222 2347889999999999999999999999998899
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
+..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999998888888888899999999999999998887776654
No 75
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=1.7e-16 Score=170.96 Aligned_cols=400 Identities=13% Similarity=-0.020 Sum_probs=248.1
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--PG---------- 114 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~---------- 114 (543)
+...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|++.|++..+.. |+
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 445555555555555666666555555422 234455555555555555555555555543321 22
Q ss_pred ------------------------ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhc
Q 009096 115 ------------------------YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKI 170 (543)
Q Consensus 115 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (543)
+..++..+...|.+.|++++|.+.|+++.+. +.. .|..+...+...
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~v---------s~~~mi~~~~~~ 468 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVI---------SWTSIIAGLRLN 468 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-Cee---------eHHHHHHHHHHC
Confidence 2345566677788888888888888776542 211 244445555666
Q ss_pred CCHHHHHHHHHHHHHcCCCC----------------------------------CHHHHHHHHHHHHHccChhHHHHHhh
Q 009096 171 GDWKTVLRETDAAIAIGVDS----------------------------------SPQLVACKAEAHLKLHQNEDADSCLS 216 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~p~~----------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 216 (543)
|++++|+..|++.....+.+ ...+...+...|.+.|+.++|...|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 77777777776665432211 12223345578888899999999888
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 217 NMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
.. +.+. ..|..+...|...|+.++|++.|++..+ ..|+...... +-..+.+.|++
T Consensus 549 ~~----~~d~------~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-------------ll~a~~~~g~v 605 (857)
T PLN03077 549 SH----EKDV------VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS-------------LLCACSRSGMV 605 (857)
T ss_pred hc----CCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH-------------HHHHHhhcChH
Confidence 86 2232 2455557789999999999999998875 4566655432 33457889999
Q ss_pred HHHHHHHHHHhccCC--CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDS--YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 295 ~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
++|.++|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ ...|..+-..+...|+.+.|....+++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999874432 23578889999999999999999999875 35555 667777777888889999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhhhhhhcccCCCC-eEEeehhhhhhhccCCCCceeeeeeC--CCCccccchhHhHH
Q 009096 373 RRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGE-VEEISSLEKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVN 449 (543)
Q Consensus 373 l~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~ 449 (543)
++++|++......+..+....++-.+.......|... +..... - .-++-++. +-.|.+ ..++....+...++
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g-~---s~ie~~~~-~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG-C---SWVEVKGK-VHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC-c---cEEEECCE-EEEEecCCCCCcchHHHHHHHH
Confidence 9999999988887777665444332211111111000 000000 0 00000111 112222 23555566666666
Q ss_pred HHHhhC------CCeEEEEEeCcC----------cHHHHHHcCCCccc---EEEEEECCe
Q 009096 450 LLCVRY------PYVHFFKVDVEE----------SLAIAKSEGVRTVP---TFKIYKNGE 490 (543)
Q Consensus 450 ~l~~~~------~~~~~~~~d~~~----------~~~~~~~~~v~~~P---t~~~~~~g~ 490 (543)
++..+. |+..++. |.++ .+.+|-.||+.++| +|.++||=+
T Consensus 759 ~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr 817 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLY 817 (857)
T ss_pred HHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCE
Confidence 665543 4444433 4332 35689999999888 688888844
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1e-17 Score=150.44 Aligned_cols=289 Identities=11% Similarity=0.001 Sum_probs=249.3
Q ss_pred cccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 40 KTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 40 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
..+.-|.|...+..+|.+++..|++++|+..|+++..++|.+....-..|..+...|+++.-...-...+........-|
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 34566889999999999999999999999999999999999999999999999999999999888888888887788889
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
+--+..++...++..|+.+-+++++... ..+..++..|..+...++.++|+-.|+.++.+.|-. ...|..+.
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~-------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-L~~Y~GL~ 375 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEP-------RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-LEIYRGLF 375 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCc-------ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-HHHHHHHH
Confidence 9999999999999999999999997211 124568889999999999999999999999998866 78889999
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHH-HHH-HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKL-MFN-ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
.+|+..|.+.+|.-.-+.+++..|.+......+ | .++ ..----++|.+.+++++.+.|....+-.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~------g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~------- 442 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLF------GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN------- 442 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh------cceeeccCchhHHHHHHHHHhhhccCCccHHHHH-------
Confidence 999999999999999999988888885433322 2 222 2223457899999999999999987753
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
.++..+...|+++.++.++++.+...|+ ...+..||.++...+.+++|++.|..|+.++|++..+.-.+-..
T Consensus 443 -----~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 443 -----LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred -----HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3688899999999999999999998887 67889999999999999999999999999999998776554443
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.80 E-value=1.1e-17 Score=161.62 Aligned_cols=249 Identities=18% Similarity=0.150 Sum_probs=169.7
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc---
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM--------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--- 111 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (543)
.+|.-......+|..|..+|+|+.|+..++.+++. .|.-......+|..|..++++++|+..|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777777777777777776 4444455555777777777777777777777764
Q ss_pred -----CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 009096 112 -----DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAI 186 (543)
Q Consensus 112 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 186 (543)
+|....++.+||.+|...|++++|..++++++ +.+++....
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al----------------------------------~I~~~~~~~ 319 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL----------------------------------EIYEKLLGA 319 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------------------HHHHHhhcc
Confidence 23445567777777777777777777664432 223332222
Q ss_pred CCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc-----
Q 009096 187 GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL----- 261 (543)
Q Consensus 187 ~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----- 261 (543)
.+......+..+ +.++..++++++|..++++++++
T Consensus 320 ~~~~v~~~l~~~----------------------------------------~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 320 SHPEVAAQLSEL----------------------------------------AAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred ChHHHHHHHHHH----------------------------------------HHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 222222333333 44455555555555555555432
Q ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------CCChhHHhHHHHHHHHccCHHHHHH
Q 009096 262 DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD--------SYNSILYCNRAICWSKMGLWENSIE 333 (543)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~ 333 (543)
.++++...... .++|.+|...|+|++|.++|++|+++. +.....+.++|..|.+++++.+|..
T Consensus 360 g~~~~~~a~~~---------~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 360 GEDNVNLAKIY---------ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred cccchHHHHHH---------HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 23333333333 358999999999999999999999763 3335678899999999999999999
Q ss_pred HHHHHHhh-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 334 DCNVALRI-------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 334 ~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
.|.+++.+ .|+-...+.+||.+|..+|++++|+++.++++.
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999876 234457789999999999999999999988874
No 78
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.80 E-value=4.7e-19 Score=138.27 Aligned_cols=91 Identities=20% Similarity=0.407 Sum_probs=85.7
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
|.+..+.+...+.+.+..++++++.||++||++|+.+.|.+++++++++++.|++||++++++++++|+|.++||+++|+
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 55777888889999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCC
Q 009096 488 NGEKLKEMINP 498 (543)
Q Consensus 488 ~g~~~~~~~g~ 498 (543)
+|+++.++.|.
T Consensus 84 ~G~~v~~~~g~ 94 (113)
T cd02989 84 NGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEEECc
Confidence 99999998774
No 79
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.79 E-value=4.5e-19 Score=136.98 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=84.0
Q ss_pred eEEeehhhhhhhc---cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHH-HHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAA---ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIA-KSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~---i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~-~~~~v~~~Pt~~ 484 (543)
+.++++ ..|.++ +..++.++|+||++||++|+.+.|.++++++.+++ +.|++||++++..++ ++|+|.++||++
T Consensus 11 v~~l~~-~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 11 VLDFYK-GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred eEEech-hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEE
Confidence 444443 445543 57889999999999999999999999999999977 899999999999999 589999999999
Q ss_pred EEECCeEEEEEcCC-CHHHHHHH
Q 009096 485 IYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 485 ~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
+|++|+...++.|. +.+.|..+
T Consensus 90 lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 90 LYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEECCccceEEeCCCCHHHHHhh
Confidence 99999988889898 99988875
No 80
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.2e-19 Score=148.90 Aligned_cols=109 Identities=28% Similarity=0.447 Sum_probs=98.7
Q ss_pred eEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+...|+..+.. .+.++|+|++.|||||+.+.|.|+.++.+||+..|.+||+|+-+.++..+||..+||+++|.
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 4456677777777655 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcCCCCCCCC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 518 (543)
||+.++++.|+++.-|++.|.++.+.+...+
T Consensus 83 ng~kid~~qGAd~~gLe~kv~~~~stsaa~~ 113 (288)
T KOG0908|consen 83 NGVKIDQIQGADASGLEEKVAKYASTSAASS 113 (288)
T ss_pred cCeEeeeecCCCHHHHHHHHHHHhccCcccc
Confidence 9999999999999999999999987765554
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.79 E-value=3.9e-17 Score=161.60 Aligned_cols=322 Identities=13% Similarity=0.006 Sum_probs=258.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhc
Q 009096 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLC 140 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (543)
+++...|...|-++++++|..+.++..+|.+|...-+...|.++|++|.+++|.+..++-..+..|....+++.|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 141 FPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
.+-+ ..+. ......|..+|..+.+.++..+|+..++.++..+|.+ ...|..+|.+|...|++..|++.|.++..
T Consensus 551 ~~~q-ka~a----~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 551 RAAQ-KAPA----FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHhh-hchH----HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3332 1111 1223446668999999999999999999999999988 78899999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH----------------------------------
Q 009096 221 FEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV---------------------------------- 266 (543)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------------------------- 266 (543)
++|.+....+.. +.+....|.|.+|+..+...+.......
T Consensus 625 LrP~s~y~~fk~------A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 625 LRPLSKYGRFKE------AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred cCcHhHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999986554444 6667777777777766655543221111
Q ss_pred ---------------HHHHHHHh--------------------H-H-----------------------------HHHHH
Q 009096 267 ---------------EIASVLTN--------------------V-K-----------------------------MVVRA 281 (543)
Q Consensus 267 ---------------~~~~~l~~--------------------~-~-----------------------------~~~~~ 281 (543)
-.|.++.. + . ....+
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 00000000 0 0 00004
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 282 RTRGNNLFS--------SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 282 ~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
+++|..|+. +.+-..|+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLG 857 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccc
Confidence 566666655 2334579999999999999999999999998 6668999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 354 VSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
.++.+..+++.|...|.++..++|.|...|-........++.
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999888766666555553
No 82
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=1.9e-16 Score=166.57 Aligned_cols=296 Identities=11% Similarity=-0.050 Sum_probs=240.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD-PGYNRAHQRLASL 125 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 125 (543)
+...+..+...|.+.|++++|...|++.. +.+...|..+...|.+.|++++|++.|++..+.. .-+...+..+...
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45567778899999999999999999764 4578899999999999999999999999997653 2245688899999
Q ss_pred HHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
+.+.|++++|...+..+++ ...++ ...+..+...|.+.|++++|...|++..+. ....|..+...|.+
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d-------~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~~ 403 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLD-------IVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGN 403 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCC-------eeehHHHHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHH
Confidence 9999999999999988876 21222 123556777888999999999999987542 24678899999999
Q ss_pred ccChhHHHHHhhcCCCCC--CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFE--HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
.|+.++|++.|++..+.. |+. ..+......+...|+.++|.++|+.+.+..+-.+.... +.
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~-------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~----------y~ 466 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNH-------VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH----------YA 466 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc----------hH
Confidence 999999999999987643 332 12333356788999999999999999754322222110 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRW 362 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 362 (543)
.+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++...|..++.+|.+.|++
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 3678899999999999999874 3344 3677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 009096 363 SEAVRDYEALRRE 375 (543)
Q Consensus 363 ~~A~~~~~~al~~ 375 (543)
++|.+.++...+.
T Consensus 545 ~~A~~v~~~m~~~ 557 (697)
T PLN03081 545 AEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988765
No 83
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.78 E-value=1.9e-18 Score=134.80 Aligned_cols=97 Identities=28% Similarity=0.438 Sum_probs=90.4
Q ss_pred ehhhhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 414 SSLEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 414 ~~~~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
.+.+.|++.+.. +++++|.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|++|+.
T Consensus 4 lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 4 LTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKE 83 (103)
T ss_dssp ESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEE
T ss_pred CCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcE
Confidence 355677777765 8999999999999999999999999999998 69999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHHhc
Q 009096 492 LKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~~~~ 510 (543)
+.++.|. +.+.|.++|+++
T Consensus 84 ~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 84 VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEESSSSHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcC
Confidence 9999999 999999999874
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=162.71 Aligned_cols=257 Identities=16% Similarity=0.131 Sum_probs=191.6
Q ss_pred cccccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHH
Q 009096 24 IVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVS 103 (543)
Q Consensus 24 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 103 (543)
.++.+....|.-.++.+++.+|.++++|..+|......++=..||..++++++++|+|-+++..||.+|...|.-.+|++
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 33444455677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 009096 104 DCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAA 183 (543)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 183 (543)
++.+-+...|...... .+. ..+++..- -...+..
T Consensus 375 ~L~~Wi~~~p~y~~l~--~a~---~~~~~~~~-------~s~~~~~---------------------------------- 408 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLV--SAG---ENEDFENT-------KSFLDSS---------------------------------- 408 (579)
T ss_pred HHHHHHHhCccchhcc--ccC---ccccccCC-------cCCCCHH----------------------------------
Confidence 9999999887643210 000 00000000 0000111
Q ss_pred HHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC--CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc
Q 009096 184 IAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH--YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL 261 (543)
Q Consensus 184 l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 261 (543)
.+..+. +.|..+....| .+++.+..+ |.+|...|+|++|+.+|+.||..
T Consensus 409 ----------~l~~i~-------------~~fLeaa~~~~~~~DpdvQ~~L------GVLy~ls~efdraiDcf~~AL~v 459 (579)
T KOG1125|consen 409 ----------HLAHIQ-------------ELFLEAARQLPTKIDPDVQSGL------GVLYNLSGEFDRAVDCFEAALQV 459 (579)
T ss_pred ----------HHHHHH-------------HHHHHHHHhCCCCCChhHHhhh------HHHHhcchHHHHHHHHHHHHHhc
Confidence 111111 11111222223 334444444 78888888889999999999999
Q ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 262 DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.|++...|. .+|-.+....+.++|+..|++|+++.|....+++++|.+++.+|.|++|.++|-.||.+
T Consensus 460 ~Pnd~~lWN------------RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 460 KPNDYLLWN------------RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred CCchHHHHH------------HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999888763 47999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC----------CHHHHHHHHHHHHHccCHHHHHH
Q 009096 342 QPN----------YTKALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 342 ~p~----------~~~~~~~la~~~~~~g~~~~A~~ 367 (543)
.+. +..+|-.|=.++..+++.+-+..
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 654 12466666677777777665444
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.6e-15 Score=132.55 Aligned_cols=269 Identities=11% Similarity=0.060 Sum_probs=227.2
Q ss_pred HHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHH
Q 009096 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-----NRAHQRLASLY 126 (543)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 126 (543)
|-.|.-+.-..+.++|+..|..+++.+|...++...||..+...|..+.|+..-+..++ .|+. ..+...||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 55677888899999999999999999999999999999999999999999998776554 5654 35788999999
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHH
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS----SPQLVACKAEAH 202 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~a~~~ 202 (543)
+..|-++.|...|......++... .+.-.+..+|....+|++|++.-++..++.++. ....+..++..+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 999999999999998876444332 345566778889999999999999999998765 245577788888
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
....+.+.|+..+.++++.+|........+ |.++...|+|+.|++.++.+++.+|+..... +.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l------G~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev-----------l~ 253 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIIL------GRVELAKGDYQKAVEALERVLEQNPEYLSEV-----------LE 253 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhh------hHHHHhccchHHHHHHHHHHHHhChHHHHHH-----------HH
Confidence 999999999999999999999996655444 9999999999999999999999999875432 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
.+-.+|.+.|+.++.+..+.++.+..+. +.+-..++..-....-.+.|.....+-+...|+--
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 3678999999999999999999998876 55566677777777778999999999999998743
No 86
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.77 E-value=2.6e-18 Score=134.36 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQ 501 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 501 (543)
.+++++|.||++||++|+.+.|.+++++++++ ++.|+++|++..+.+++++||.++||+++|++|+.+.+..|. +.+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~ 102 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQ 102 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHH
Confidence 57899999999999999999999999999996 489999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHhc
Q 009096 502 FLEDSANLA 510 (543)
Q Consensus 502 ~~~~~~~~~ 510 (543)
++.++|+++
T Consensus 103 ~l~~~i~~~ 111 (111)
T cd02963 103 HVVDFVRKL 111 (111)
T ss_pred HHHHHHhcC
Confidence 999999864
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.77 E-value=4.7e-16 Score=150.90 Aligned_cols=314 Identities=12% Similarity=-0.022 Sum_probs=228.5
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
+|+.+.++..+|..+...|++++|...+.++.+..|.+ .+..+..|.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68899999999999999999999999999999887755 456788899999999999999999999999999988777
Q ss_pred HHHHHHHHhCC----HHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 121 RLASLYFRLGQ----VENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 121 ~la~~~~~~g~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
. +..+...|+ ...+...+.... ..++.. .......+..+...|++++|+..++++++..|++ ...+.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~ 152 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVH 152 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccC-cCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHH
Confidence 5 555555544 444444444321 222221 2335567788899999999999999999999988 66788
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.+|.++...|++++|+..+++++...|.++.. ....+..+|.++...|++++|+..|++++...|...........
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~-- 228 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSML--RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA-- 228 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcch--hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH--
Confidence 88999999999999999999999988764332 22345566999999999999999999998776632222111000
Q ss_pred HHHHHHHHHHHHHhcCC------HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------
Q 009096 277 MVVRARTRGNNLFSSRR------YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN------ 344 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 344 (543)
..+...+...|. ++............ +.........+.++...|+.++|...++........
T Consensus 229 -----~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 302 (355)
T cd05804 229 -----ASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ 302 (355)
T ss_pred -----HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh
Confidence 001222222332 22222221111111 112233346888899999999999999887664322
Q ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 345 ---YTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 345 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
........|.++...|++++|++.+..++.+.
T Consensus 303 ~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 303 PARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34667888999999999999999999998764
No 88
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=3.8e-18 Score=133.88 Aligned_cols=104 Identities=19% Similarity=0.334 Sum_probs=91.0
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
..+..+...+.....+..+++++++||++||++|+.+.|.++++++++++ +.|+.+|++..+.++++|+|.++||+++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 34556655433334566688999999999999999999999999999965 89999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+++.+..|. +.++++.+|+..+
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999999999998 9999999998764
No 89
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=4.4e-15 Score=158.15 Aligned_cols=310 Identities=10% Similarity=-0.016 Sum_probs=173.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP-GYNRAHQRLAS 124 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 124 (543)
+...|..+-..+...|++++|...|+++.+... .+...+..+..+|.+.|+.++|.+.|+++.+... .+...|..+..
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455666666666677777777777777665432 2455666666777777777777777777665442 24566666777
Q ss_pred HHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHH----------------------------HHHHHHHHHhhhhcCCH
Q 009096 125 LYFRLGQVENARHHLCFPGH---HPDPNELLKLQS----------------------------FEKHLNRCAESRKIGDW 173 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 173 (543)
.|.+.|++++|+..|.++.. .|+...+..+.. ...+..+...+.+.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 77777777777777666544 222221100000 01122233334444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC--CCCChhHHHHHHHHHHHHHHHhhcChHHH
Q 009096 174 KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE--HYSPPSQVKFLVWLLKLMFNISELRFENA 251 (543)
Q Consensus 174 ~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 251 (543)
++|.+.|+++.+.+.......|..+...|.+.|++++|+..|.++.+.. |+. ..+..+...+.+.|++++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-------~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-------VFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCCHHHH
Confidence 4444444444444333333444444444444444444444444443321 110 1112223344445555555
Q ss_pred HHHHHHHhhcCCC-cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCChhHHhHHHHHHHHccCH
Q 009096 252 VSSAEKAGLLDYS-NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY--DSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 252 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~ 328 (543)
.+.++++.+.... +... +..+...|.+.|++++|++.|++..+. .| +...|..+...|.+.|++
T Consensus 669 ~~l~~eM~k~G~~pd~~t------------ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVS------------YSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHHHHHcCCCCCHHH------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCH
Confidence 5555554433211 1111 233567777788888888888776543 34 356777788888888888
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 329 ENSIEDCNVALRIQ-PNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 329 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
++|++.|++..... ..+...|..+...+.+.|++++|.+.+.+.++..
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 88888888766542 2235566666677888888888888888887754
No 90
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.77 E-value=1.8e-18 Score=129.91 Aligned_cols=86 Identities=14% Similarity=0.279 Sum_probs=76.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE---------E
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK---------E 494 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~ 494 (543)
.+++++++|+++||++|+.+.|.|++++.++++ +.|++||+|+.+++++.|+|.++||+++|+||+-+. .
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~k 92 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHTK 92 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCcE
Confidence 588999999999999999999999999999999 999999999999999999999999999999997763 2
Q ss_pred EcCC--CHHHHHHHHHhc
Q 009096 495 MINP--SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~--~~~~~~~~~~~~ 510 (543)
+.+. +++++.+.|+..
T Consensus 93 ~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 93 FVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEEcCchhHHHHHHHHH
Confidence 3333 778888888753
No 91
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=3.5e-17 Score=151.70 Aligned_cols=207 Identities=11% Similarity=-0.030 Sum_probs=183.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc-ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH-QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
+...+.+++|+..+.++++++|.+ ..+|..++.++..+| ++++++..++++++.+|++.. +|..++.++...
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~-ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq------aW~~R~~~l~~l 119 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN-YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ------IWHHRRWLAEKL 119 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH------HhHHHHHHHHHc
Confidence 346778999999999999999998 678889999999998 689999999999999999955 566668788888
Q ss_pred cCh--HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 246 LRF--ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 246 g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
|+. ++++.+++++++.+|++..+|. .+|.++...|+|++|++++.++|+.+|.+..+|+.++.++.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~------------~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWS------------HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHH------------HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 874 7889999999999999999974 37899999999999999999999999999999999999988
Q ss_pred Hc---cCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 324 KM---GLW----ENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 324 ~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
++ |.+ ++++.+..++|..+|++..+|..++.++.. +++..+|++.+.++++..|++..+...|..+...
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 76 333 578999999999999999999999999988 5667889999999999999999999888887764
No 92
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=2.7e-18 Score=131.45 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=78.9
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 503 (543)
++++++.||++||++|+.+.|.+++++..+++ +.|+++|++..+.++++|+|.++||+++|++|+++.++.|. +.++|
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 91 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQL 91 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHH
Confidence 67999999999999999999999999999976 88999999999999999999999999999999999999998 99999
Q ss_pred HHHHH
Q 009096 504 EDSAN 508 (543)
Q Consensus 504 ~~~~~ 508 (543)
+++|+
T Consensus 92 ~~~l~ 96 (96)
T cd02956 92 RQMLD 96 (96)
T ss_pred HHHhC
Confidence 99875
No 93
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.77 E-value=1.4e-18 Score=134.18 Aligned_cols=92 Identities=17% Similarity=0.327 Sum_probs=84.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+...|++.+..+++++|.||++||++|+.+.|.++++++++++ +.|+++|+++++.++++++|.++||+++|++|+.+.
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPE 86 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcc
Confidence 3567777777778999999999999999999999999999976 899999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHH
Q 009096 494 EMINP-SHQFLEDS 506 (543)
Q Consensus 494 ~~~g~-~~~~~~~~ 506 (543)
++.|. +.+.|.++
T Consensus 87 ~~~G~~~~~~l~~f 100 (101)
T cd03003 87 KYYGDRSKESLVKF 100 (101)
T ss_pred cCCCCCCHHHHHhh
Confidence 99998 88888765
No 94
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=3.6e-15 Score=158.83 Aligned_cols=300 Identities=14% Similarity=0.045 Sum_probs=193.2
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISM--SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL----DPGYNRAHQR 121 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 121 (543)
...|..+...|.+.|++++|+..|.++.+. .| +...|..+...|.+.|++++|.+.|.++... .|+ ...|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 344444444444444444444444444332 12 2334444444444444444444444444331 222 234444
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCC-CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHH-PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
+...|.+.|++++|.+.|+++.+. ..+. ...+..+...+.+.|++++|+..|++..+.+-......+..+..
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~-------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGT-------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444444555555555554444431 0111 12355667788899999999999999998864445678888999
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 278 (543)
.+.+.|++++|.++++.+.+....... ..+..+...|.+.|++++|.+.|+++.. ..|+.. .|
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~-----~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv-ty--------- 722 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGT-----VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS-TM--------- 722 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HH---------
Confidence 999999999999999998875433221 2455567899999999999999999865 345432 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHH-H
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKY--DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ--PNYTKALLRR-A 353 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l-a 353 (543)
..+...|.+.|++++|+++|++.... .|+ ...|..+...+.+.|++++|...+.++++.. |+ ...+..+ +
T Consensus 723 ---N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIg 797 (1060)
T PLN03218 723 ---NALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITG 797 (1060)
T ss_pred ---HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence 23677899999999999999988754 354 6778888899999999999999999998764 43 3333333 3
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 354 VSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
.+. +++++|....+..+..++.+
T Consensus 798 lc~---~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 798 LCL---RRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHH---HHHHHHhhhhhhhhhhhccc
Confidence 322 46888888777777666554
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=1.4e-15 Score=144.59 Aligned_cols=338 Identities=13% Similarity=-0.005 Sum_probs=263.3
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
.|.......++.++.+..-|..+|..+...++|++|+.+|+.|+.++|+|...|..++....++++++.....-.+.+++
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 36666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCC-ChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP-DPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
.|..-..|...|..+...|++..|...++...+.. .+.........+..+.+.....+.|.+++|++.+.+--..--+.
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk 218 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK 218 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999988777632 33444556667777778888899999999988776543332222
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHH-HHHHHHhhcCCCcH---
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAV-SSAEKAGLLDYSNV--- 266 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~-~~~~~al~~~p~~~--- 266 (543)
.......+..+..++++++|...+...+..+|++......+.. ++..-.+.-+++ ..|...-+..|...
T Consensus 219 -la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 219 -LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK------ALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred -HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH------HHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 3445568999999999999999999999999999665554422 221222222333 23332222222111
Q ss_pred ---------------------------------HHHHHHHh-----------------------------------HHHH
Q 009096 267 ---------------------------------EIASVLTN-----------------------------------VKMV 278 (543)
Q Consensus 267 ---------------------------------~~~~~l~~-----------------------------------~~~~ 278 (543)
+...++.. ...+
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 00000000 0011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
-.++.++..+...|+++.|..+.+.|+...|.-++.+...|.++.+.|++++|...+.++-+++-.+.-....-|.-..+
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 11455778888999999999999999999999999999999999999999999999999999986665555567888899
Q ss_pred ccCHHHHHHHHHHHHhcC
Q 009096 359 LGRWSEAVRDYEALRREL 376 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~ 376 (543)
.++.++|.+...+.-+-.
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 999999999877765543
No 96
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.76 E-value=2.1e-18 Score=131.61 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=77.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQF 502 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 502 (543)
.+++++|.||++||++|+.+.|.+++++++++++.|+.+|.+ ..+.++.+|+|.++||+++|++| ++.++.|. +.++
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~ 95 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDS 95 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHH
Confidence 578999999999999999999999999999999999999998 88999999999999999999999 88899998 9999
Q ss_pred HHHHH
Q 009096 503 LEDSA 507 (543)
Q Consensus 503 ~~~~~ 507 (543)
|.+||
T Consensus 96 l~~f~ 100 (100)
T cd02999 96 LAAFY 100 (100)
T ss_pred HHhhC
Confidence 98875
No 97
>PRK10996 thioredoxin 2; Provisional
Probab=99.76 E-value=5.7e-18 Score=137.77 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=89.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+...+++.+..++++++.||++||++|+.+.|.|.+++.++.+ +.|+++|++++++++++|+|.++||+++|++|+++.
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEE
Confidence 4567777888889999999999999999999999999988864 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcC
Q 009096 494 EMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~ 511 (543)
++.|. +.++|+++|++++
T Consensus 121 ~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEcCCCCHHHHHHHHHHhC
Confidence 99998 9999999998753
No 98
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.75 E-value=1.9e-17 Score=139.34 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=87.5
Q ss_pred CCCeEEeehhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 407 SGEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+.+..+++...|.+.+... .+++|+||++||++|+.+.|.|++++.+|++++|++||+++. .++.+|+|.++||+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 46677777757777776443 489999999999999999999999999999999999999988 89999999999999
Q ss_pred EEEECCeEEEEEcCC--------CHHHHHHHHHh
Q 009096 484 KIYKNGEKLKEMINP--------SHQFLEDSANL 509 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~--------~~~~~~~~~~~ 509 (543)
++|++|+++.+++|+ +.+.|+.+|.+
T Consensus 140 llyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 140 LVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999999998874 45666666654
No 99
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.75 E-value=4e-18 Score=134.00 Aligned_cols=89 Identities=29% Similarity=0.587 Sum_probs=79.6
Q ss_pred CCeEEeehhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+..+++ +.|.+.+... .+++++||++||++|+.+.|.+++++.+++++.|+++|++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 44566666 6776666443 799999999999999999999999999999999999999999 999999999999999
Q ss_pred EEECCeEEEEEcCC
Q 009096 485 IYKNGEKLKEMINP 498 (543)
Q Consensus 485 ~~~~g~~~~~~~g~ 498 (543)
+|++|+++.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999999884
No 100
>PTZ00051 thioredoxin; Provisional
Probab=99.75 E-value=6e-18 Score=130.15 Aligned_cols=96 Identities=28% Similarity=0.548 Sum_probs=88.9
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+..+.+.+.+...+..++++++.||++||++|+.+.|.+++++++++++.|+.+|+++...++++|+|.++||+++|++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 34566778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHH
Q 009096 490 EKLKEMINPSHQFLED 505 (543)
Q Consensus 490 ~~~~~~~g~~~~~~~~ 505 (543)
+++.++.|...++|++
T Consensus 82 ~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 82 SVVDTLLGANDEALKQ 97 (98)
T ss_pred eEEEEEeCCCHHHhhc
Confidence 9999999998888764
No 101
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.75 E-value=5.4e-18 Score=131.87 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=82.2
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-eEE
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-EKL 492 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~ 492 (543)
.+.|.+.+ ..+++++|.||++||++|+.+.|.++++++++.+ +.|+++|++++++++++++|.++||+++|++| +.+
T Consensus 8 ~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKY 87 (104)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCc
Confidence 45566654 4567999999999999999999999999999865 89999999999999999999999999999988 889
Q ss_pred EEEcCC-C-HHHHHHHH
Q 009096 493 KEMINP-S-HQFLEDSA 507 (543)
Q Consensus 493 ~~~~g~-~-~~~~~~~~ 507 (543)
.++.|. + .++|.++|
T Consensus 88 ~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 88 HSYNGWHRDADSILEFI 104 (104)
T ss_pred eEccCCCCCHHHHHhhC
Confidence 999998 7 99988774
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=6.6e-17 Score=132.85 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=121.1
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 330 (543)
-...|+++++++|++.. .+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++
T Consensus 12 ~~~~~~~al~~~p~~~~---------------~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 76 (144)
T PRK15359 12 PEDILKQLLSVDPETVY---------------ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTT 76 (144)
T ss_pred HHHHHHHHHHcCHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 34678999999998622 269999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
|+..|++++.++|+++.+++++|.++..+|++++|+..|++++++.|+++..+...+.+...+..
T Consensus 77 A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 77 AINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888777643
No 103
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.74 E-value=1.1e-17 Score=136.40 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=89.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCc--HHHHHHcCCCcccEEEEEE-CCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEES--LAIAKSEGVRTVPTFKIYK-NGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~--~~~~~~~~v~~~Pt~~~~~-~g~~~ 492 (543)
..+.+++..+++++|.||++||++|+.+.|.+.++.+++.+ +.|+.||++.. ..++.+|+|.++||+++|+ +|+++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 45566777889999999999999999999999999999965 88888888754 5889999999999999995 89999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCCCCCcc
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVYKLPLV 520 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 520 (543)
.++.|. +.++|+++|++++....-+..+
T Consensus 91 ~~~~G~~~~~~l~~~l~~l~~~~~~~~~~ 119 (142)
T cd02950 91 GQSIGLQPKQVLAQNLDALVAGEPLPYAN 119 (142)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCCccc
Confidence 999999 8999999999987655333333
No 104
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=3.3e-17 Score=142.54 Aligned_cols=122 Identities=31% Similarity=0.606 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
..+..++..|+-+++.++|++|+..|.+||+++|.++..|.+++.+|.++|.++.|++.++.++.++|.+.++|.++|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
|..+|++++|++.|+++|+++|+++..+..|..+...+++.+
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999988886654
No 105
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.74 E-value=1.6e-17 Score=127.61 Aligned_cols=92 Identities=23% Similarity=0.454 Sum_probs=83.1
Q ss_pred hhhhhccCCC--CceeeeeeCCCCccccchhHhHHHHHhh-CCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 417 EKFKAAISSP--GVSLVHFKEASSEKCEEISPFVNLLCVR-YPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 417 ~~~~~~i~~~--~~~lv~f~~~~c~~c~~~~p~l~~l~~~-~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+.+++.+... +++++.||++||++|+.+.|.+++++.+ .+++.|+++|+++.++++.+|+|.++||+++|++|+++.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEE
Confidence 4555666544 8999999999999999999999999999 567999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHH
Q 009096 494 EMINPSHQFLEDSAN 508 (543)
Q Consensus 494 ~~~g~~~~~~~~~~~ 508 (543)
+..|.++++|.+.|+
T Consensus 83 ~~~g~~~~~l~~~~~ 97 (97)
T cd02984 83 RVSGADPKELAKKVE 97 (97)
T ss_pred EEeCCCHHHHHHhhC
Confidence 999999999988764
No 106
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.71 E-value=4e-17 Score=127.69 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=81.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----C---CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----P---YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+.+.|++.+..+++++|.||++||++|+.+.|.+++++..+ + .+.|+++|++.++.++++|||.++||+++|+
T Consensus 7 ~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~ 86 (108)
T cd02996 7 TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFR 86 (108)
T ss_pred CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEe
Confidence 34677778888889999999999999999999999988764 2 3899999999999999999999999999999
Q ss_pred CCeE-EEEEcCC-CHHHHHHHH
Q 009096 488 NGEK-LKEMINP-SHQFLEDSA 507 (543)
Q Consensus 488 ~g~~-~~~~~g~-~~~~~~~~~ 507 (543)
+|++ ..++.|. +.++|.+||
T Consensus 87 ~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 87 NGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCcceecCCCCCHHHHHhhC
Confidence 9984 4677788 899888875
No 107
>PLN03077 Protein ECB2; Provisional
Probab=99.71 E-value=2.7e-14 Score=154.09 Aligned_cols=309 Identities=13% Similarity=0.092 Sum_probs=214.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--CCc----------------------------------chhhHHhHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISM--SPE----------------------------------NAAYRSNRA 89 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la 89 (543)
.+...|..+...|.+.|++++|+..|.++... .|+ +...+..+.
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 35667888888888888888888888887653 343 334455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHh
Q 009096 90 ATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAE 166 (543)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~ 166 (543)
..|.+.|++++|.+.|++... .+...|..+...|.+.|++++|+..|+++.+ .|+... +......
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t---------~~~ll~a 398 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT---------IASVLSA 398 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee---------HHHHHHH
Confidence 666666666666666665432 2445566666667777777777776665543 222221 2223345
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL 246 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 246 (543)
+...|+++.|.+.+..+.+.+......++..+...|.+.|++++|.+.|++..+.+ .. .|..+...+...|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d---~v------s~~~mi~~~~~~g 469 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD---VI------SWTSIIAGLRLNN 469 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---ee------eHHHHHHHHHHCC
Confidence 56778888888888888887766667788889999999999999999999886532 22 3444477888999
Q ss_pred ChHHHHHHHHHHhhc-CCCcHHHHHHHHhHH------HHHH----------------HHHHHHHHHhcCCHHHHHHHHHH
Q 009096 247 RFENAVSSAEKAGLL-DYSNVEIASVLTNVK------MVVR----------------ARTRGNNLFSSRRYSEACSAYGE 303 (543)
Q Consensus 247 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~------~~~~----------------~~~~g~~~~~~~~~~~A~~~~~~ 303 (543)
+.++|+..|+++... .|+......++..+. .... ...+-..|.+.|++++|...|+.
T Consensus 470 ~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 470 RCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred CHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999998743 455444333332111 0010 11234678888999999999887
Q ss_pred HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI--QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 304 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
. +.+...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+-.|
T Consensus 550 ~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 550 H----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred c----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 5 456788999999999999999999999988764 455 34455666778888999999999998885544433
No 108
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.71 E-value=5.8e-17 Score=126.64 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=82.9
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE--EEc
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK--EMI 496 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~ 496 (543)
+.+.+..+..+++.||++||++|+.+.|.+++++.+++.+.|..+|++++++++.+|+|.++||+++|++|.... ++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEE
Confidence 334455677889999999999999999999999998877999999999999999999999999999999876554 677
Q ss_pred CC-CHHHHHHHHHhcCC
Q 009096 497 NP-SHQFLEDSANLAPS 512 (543)
Q Consensus 497 g~-~~~~~~~~~~~~~~ 512 (543)
|. +..++.++|+..+.
T Consensus 95 G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 95 GLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 98 89999999987654
No 109
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.71 E-value=6.8e-17 Score=124.88 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=80.3
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
.+.|++.+.. .+++.||++||++|+.+.|.+++++..+. ++.|+++|+++++.++++|+|.++||++++++|+. .
T Consensus 8 ~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~ 84 (101)
T cd02994 8 DSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGVF-R 84 (101)
T ss_pred hhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCCE-E
Confidence 4566776643 37899999999999999999999998775 48999999999999999999999999999999985 7
Q ss_pred EEcCC-CHHHHHHHHHh
Q 009096 494 EMINP-SHQFLEDSANL 509 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~ 509 (543)
++.|. +.++|.++|++
T Consensus 85 ~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 85 RYQGPRDKEDLISFIEE 101 (101)
T ss_pred EecCCCCHHHHHHHHhC
Confidence 88898 99999999864
No 110
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.70 E-value=8.8e-17 Score=130.79 Aligned_cols=89 Identities=19% Similarity=0.341 Sum_probs=77.5
Q ss_pred CeEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCc-----
Q 009096 409 EVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRT----- 479 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~----- 479 (543)
.+..++. +.|++.+. .+++++|+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|.+
T Consensus 29 ~v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 29 HIKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred ccEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 3444444 56777663 35689999999999999999999999999986 49999999999999999999998
Q ss_pred -ccEEEEEECCeEEEEEcCC
Q 009096 480 -VPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 480 -~Pt~~~~~~g~~~~~~~g~ 498 (543)
+||+++|++|+++.++.|+
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 108 QLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred CCCEEEEEECCEEEEEEecc
Confidence 9999999999999999985
No 111
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.70 E-value=1.3e-16 Score=121.85 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=80.4
Q ss_pred cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CH
Q 009096 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SH 500 (543)
Q Consensus 423 i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~ 500 (543)
...++++++.||++||+.|+.+.|.++++.+++++ +.+..+|+++.++++.+++|.++||+++|++|+++.++.|. +.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~ 89 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMK 89 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccH
Confidence 35678999999999999999999999999999965 99999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHH
Q 009096 501 QFLEDSAN 508 (543)
Q Consensus 501 ~~~~~~~~ 508 (543)
+++.++|+
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 99998874
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.5e-13 Score=125.95 Aligned_cols=357 Identities=14% Similarity=0.052 Sum_probs=199.3
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+.+...+.+...|.+.+++...-.++.+.++|++|+...++-..... +....+..+.|.++++..++|+..++ ..+
T Consensus 31 a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~ 106 (652)
T KOG2376|consen 31 AVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTLK---GLD 106 (652)
T ss_pred HHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHHh---ccc
Confidence 44445555556666666666666666666666666633222111111 11112466666666666666666666 344
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChH-HHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPN-ELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
+.+.......|.+++++|+|++|.+.|+.+++...++ .......+.+ .+.. . ... ..+.....|..+
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a---~~a~-------l-~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA---VAAA-------L-QVQ-LLQSVPEVPEDS 174 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHHh-------h-hHH-HHHhccCCCcch
Confidence 4455566666666666666666666666665511111 1000000000 0000 0 000 122222334545
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCC--------CCCCCChhHHHH-HHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPK--------FEHYSPPSQVKF-LVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
-+.+++.+.++...|+|.+|++.++++++ -+....+....+ .....++.++..+|+.++|...|...++.+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 66777788888888888888888887722 122212222222 123444777788888888888888888777
Q ss_pred CCcHHHHHHH-HhHHHHH------------------------------------HHHHH---------------------
Q 009096 263 YSNVEIASVL-TNVKMVV------------------------------------RARTR--------------------- 284 (543)
Q Consensus 263 p~~~~~~~~l-~~~~~~~------------------------------------~~~~~--------------------- 284 (543)
|.+....... +|+-.+. .+.+.
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 6655322211 1110000 00011
Q ss_pred -------------HHHHHhcCCHHHHHHHHHHHhccCCCC-hhHHhHHHHHHHHccCHHHHHHHHH--------HHHhhC
Q 009096 285 -------------GNNLFSSRRYSEACSAYGEGLKYDSYN-SILYCNRAICWSKMGLWENSIEDCN--------VALRIQ 342 (543)
Q Consensus 285 -------------g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~ 342 (543)
.....+...+.+|++.+....+.+|.. ..+...++.+...+|+++.|++.+. ...+..
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~ 414 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK 414 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc
Confidence 111111224555666666666666665 5567777777777788877777777 222211
Q ss_pred --CC--------------------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 343 --PN--------------------------------------YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 343 --p~--------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
|. .-..+...+....+.|+-++|...+++.++.+|++.++
T Consensus 415 ~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 415 HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL 494 (652)
T ss_pred cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence 11 11224455666677799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccc
Q 009096 383 AESLHNAQVALKKSRGEFVNNMK 405 (543)
Q Consensus 383 ~~~l~~~~~~l~~~~~~~~~~~~ 405 (543)
...+..+...+...+.....+..
T Consensus 495 l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 495 LVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhcCHHHHHHHhhcC
Confidence 99999888888777766665543
No 113
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.69 E-value=1.2e-16 Score=124.05 Aligned_cols=91 Identities=22% Similarity=0.366 Sum_probs=80.8
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
.+.|...+..+ ++++.||++||++|+.+.|.++++++++. ++.|+.+|++.+..++++|+|.++||+++|++|++
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEK 85 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCe
Confidence 35566766544 69999999999999999999999998874 48999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHH
Q 009096 492 LKEMINP-SHQFLEDSA 507 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~ 507 (543)
+.++.|. +.++|.++|
T Consensus 86 ~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 86 VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeEeeCCCCHHHHHhhC
Confidence 9999999 888888764
No 114
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.68 E-value=6e-17 Score=125.79 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=81.6
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCcC----cHHHHHHcCCCcccEEEEEE-
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVEE----SLAIAKSEGVRTVPTFKIYK- 487 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~~----~~~~~~~~~v~~~Pt~~~~~- 487 (543)
+.+.+++..+++++|.||++||++|+.+.|.+ +++.+.+. ++.++.+|+++ ...++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 34566777889999999999999999999987 67877776 69999999987 67899999999999999998
Q ss_pred -CCeEEEEEcCC-CHHHHHHHHH
Q 009096 488 -NGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 488 -~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
+|+++.++.|+ +.++|.++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 89999999998 9999998874
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=2.8e-15 Score=148.69 Aligned_cols=315 Identities=13% Similarity=0.020 Sum_probs=224.0
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.|..+|..+...+++..|+..|+.++..+|++..+|..+|.+|...|+|..|++.|.++..++|.+.-+.+..+.+...+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 45557777777888888888999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHH
Q 009096 130 GQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAI-------GVDSSPQLVACKAEAH 202 (543)
Q Consensus 130 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~~~a~~~ 202 (543)
|+|.+|+..+...+..............+.++..+..+...|-+.+|...+++.++. ........|..++...
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 999999998877765221111122233444555555555566666666555555443 2111122222222211
Q ss_pred HH-----------------------ccCh---h---HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh--cChHHH
Q 009096 203 LK-----------------------LHQN---E---DADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE--LRFENA 251 (543)
Q Consensus 203 ~~-----------------------~~~~---~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--g~~~~A 251 (543)
.- ++.. + -+.+++-..+++... +.+|.++..-+.+....... .+...|
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 11 1111 0 122222222222211 23333332222222222222 233579
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHH
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 331 (543)
+.++.+++++..++...|.. +|.+ ...|++.-|..+|-+++..+|.....|.|+|.++.+..+++.|
T Consensus 803 i~c~KkaV~L~ann~~~Wna------------LGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNA------------LGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHH------------HHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 99999999999999998765 4665 6679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
...|.++..++|.+...|...+.+....|+.-++...|...-++...
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~ 916 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK 916 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence 99999999999999999999999999999999999999885555443
No 116
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.68 E-value=2.3e-16 Score=136.99 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=89.7
Q ss_pred eEEeehhhhhhhccC-----CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 410 VEEISSLEKFKAAIS-----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~-----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+..+ +.+.|++.+. .+++++|.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTL 110 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEE
Confidence 4444 4556766653 257999999999999999999999999999976 89999999999999999999999999
Q ss_pred EEEECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++|++|+++....|. +.+++.+++.+.+.
T Consensus 111 ~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 111 LLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999888897 99999999998754
No 117
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.67 E-value=1.1e-15 Score=130.29 Aligned_cols=100 Identities=22% Similarity=0.318 Sum_probs=83.8
Q ss_pred CCCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 407 SGEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
.|.+..++..++...+... +.+++|+||++||++|+.+.|.|++++.+|++++|++||++.. +..|+|.++||++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 3667777766555555544 3489999999999999999999999999999999999999864 6899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHh
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANL 509 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~ 509 (543)
+|+||+.+.+++|+ +.+.|+.+|.+
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999873 56777776654
No 118
>PTZ00062 glutaredoxin; Provisional
Probab=99.67 E-value=2.4e-16 Score=134.29 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=84.1
Q ss_pred ehhhhhhhccCCC-CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSP-GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~-~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.+.+.+..+ +.++++||++||++|+.+.|.+.+++++||++.|+.||.+ |+|.++||+++|+||+++
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 3456666776654 8899999999999999999999999999999999999987 999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHhcCCCC
Q 009096 493 KEMINPSHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~~~~~~~~~~~~~~~~~ 514 (543)
.|++|.++.++...|+++....
T Consensus 76 ~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 76 NSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred eeeeCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999887653
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=5.9e-15 Score=133.95 Aligned_cols=193 Identities=15% Similarity=0.017 Sum_probs=145.2
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch---hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA---AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR- 117 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (543)
+..+..++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 55677899999999999999999999999999999999875 68899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHh--------CCHHHHHHHhcCCCC-CCChHHH-hHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 118 --AHQRLASLYFRL--------GQVENARHHLCFPGH-HPDPNEL-LKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 118 --~~~~la~~~~~~--------g~~~~A~~~~~~a~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
+++.+|.++... |++++|+..|++++. .|+.... .....+ +... ..+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~------~~~~--------------~~~- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM------DYLR--------------NRL- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH------HHHH--------------HHH-
Confidence 799999999887 889999999999887 4433221 111000 0000 000
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
......+|..+...|++.+|+..+++++...|+.+.. ..+++.+|.++..+|++++|..+++......|+
T Consensus 166 ------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 166 ------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT---EEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1122345777777788888888777777777765322 234445577888888888888888777766653
No 120
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=6e-16 Score=120.11 Aligned_cols=94 Identities=29% Similarity=0.498 Sum_probs=84.5
Q ss_pred hhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 417 EKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 417 ~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
+.+.+.+.. ++++++.||++||++|+.+.|.+.++.+++++ +.|+.+|++.++.++++|+|.++||+++|++|+++.+
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 344454444 56999999999999999999999999989875 9999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhc
Q 009096 495 MINP-SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~ 510 (543)
+.|. +.+++.++|++.
T Consensus 84 ~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 84 SVGALPKAALKQLINKN 100 (101)
T ss_pred ecCCCCHHHHHHHHHhh
Confidence 9998 889999999875
No 121
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.66 E-value=5.1e-16 Score=122.48 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=79.1
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-----------HHHHHcC----CC
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-----------AIAKSEG----VR 478 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-----------~~~~~~~----v~ 478 (543)
.+.+.+.+.+.+++.++++|+++|||+|+.+.|.|+++.++ .++.|+.+|++.++ ++.+.|+ |.
T Consensus 11 it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 11 TTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred cCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 34566778888888999999999999999999999999988 55788999988542 4556665 55
Q ss_pred cccEEEEEECCeEEEEEcCC--CHHHHHHHHH
Q 009096 479 TVPTFKIYKNGEKLKEMINP--SHQFLEDSAN 508 (543)
Q Consensus 479 ~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~~ 508 (543)
++||+++|+||+++.+..|. +.++|++++.
T Consensus 90 ~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 69999999999999999994 7999998864
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=7.4e-15 Score=133.29 Aligned_cols=177 Identities=16% Similarity=0.097 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
.....++.+|..+...|++++|+..+++++...|.++.. ..+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA---EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 346778888999999999999999999999988887532 22455669999999999999999999999999888653
Q ss_pred HHHHhHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhccCCCChhHH-----------------hHHHHHHHH
Q 009096 270 SVLTNVKMVVRARTRGNNLFSS--------RRYSEACSAYGEGLKYDSYNSILY-----------------CNRAICWSK 324 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~ 324 (543)
..+ +.+|.++... |++++|++.|++++..+|++..++ ..+|.+|..
T Consensus 108 ~a~---------~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 108 YAY---------YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred HHH---------HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3367777765 889999999999999999985432 467889999
Q ss_pred ccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 325 MGLWENSIEDCNVALRIQPNY---TKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 325 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.|++.+|+..|++++...|+. +++++.+|.++..+|++++|..+++......|+
T Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 179 RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999997764 589999999999999999999999988777663
No 123
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.65 E-value=6.4e-16 Score=120.11 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=86.2
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.|.+.+..++++++.||++||++|+.+.|.+++++..+. ++.|+.+|++++..++++|+|.++||+++|++|+.+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcc
Confidence 35566777778899999999999999999999999998886 499999999999999999999999999999988777
Q ss_pred EEEcCC-CHHHHHHHHHhcC
Q 009096 493 KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~ 511 (543)
.++.|. +.++|..+|++++
T Consensus 83 ~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 83 VDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred eeecCCCCHHHHHHHHHhcC
Confidence 888898 9999999998753
No 124
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.65 E-value=6e-16 Score=121.65 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=80.1
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC--cHHHHHHcCCCcccEEEEEECCe-
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE--SLAIAKSEGVRTVPTFKIYKNGE- 490 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~~g~- 490 (543)
...+.+.+ ..++++++.||++||++|+.+.|.++++++++.+ +.|+.+|++. ++.++.+|+|.++||+++|++|+
T Consensus 7 ~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCc
Confidence 34555655 4466799999999999999999999999999876 8999999998 88999999999999999999886
Q ss_pred ----EEEEEcCC-CHHHHHHHHH
Q 009096 491 ----KLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 491 ----~~~~~~g~-~~~~~~~~~~ 508 (543)
....+.|. +.+++.+||.
T Consensus 87 ~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 87 ASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred ccccccccccCccCHHHHHHHhC
Confidence 45667788 9999998874
No 125
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-15 Score=135.68 Aligned_cols=325 Identities=11% Similarity=0.011 Sum_probs=215.5
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSDCEEAVRLD------PGYNRA 118 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~ 118 (543)
-.+-..|.-+++.|++...+.+|+.|++...++ ..+|..||.+|+.+++|++|+++-..=+.+. -..+.+
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 345567888999999999999999999987766 4678899999999999999999865443332 234566
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK 198 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 198 (543)
--+||..+..+|.|++|+.+..+-+. .....-..+....++++++.+|...|+.-....--++ . ....++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd-~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~--g---~f~~ev---- 167 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLD-FARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK--G---AFNAEV---- 167 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhH-HHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc--c---cccHHH----
Confidence 77899999999999999988765543 0001112233344555555555544432111000000 0 000000
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
...++.|.++|..-+++.....+....-.++-++|..|+-+|+|+.|+..-+.-+.+..+..+-.. .-
T Consensus 168 ------~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa------eR 235 (639)
T KOG1130|consen 168 ------TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA------ER 235 (639)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH------HH
Confidence 011233444444444433333333333344555588999999999999988877766544332111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC------CCH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYD------SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP------NYT 346 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~ 346 (543)
.++.++|+++.-+|+++.|+++|++.+.+. ...+...+.||..|.-+.++++|+.++++-+.+.. ...
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 123468999999999999999999887542 22367789999999999999999999999877632 345
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----C-ChHHHHHHHHHHHHHHh
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELP-----G-DNEVAESLHNAQVALKK 395 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~l~~~~~~l~~ 395 (543)
.+++.+|.++-.+|..++|+.+.++.+++.- . ...+..++......++.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 7889999999999999999999988887632 2 23355556666555544
No 126
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.65 E-value=9e-16 Score=119.66 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=82.7
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--C-eEEEEEeCcC--cHHHHHHcCCCcccEEEEEECCe
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--Y-VHFFKVDVEE--SLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~-~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
...+...+..++++++.||++||++|+.+.|.+.++++.++ + +.|+.+|++. +..++.+++|+++||+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 34677777778899999999999999999999999998875 3 8899999998 89999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 009096 491 KLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~ 507 (543)
.+.++.|. +.+++.++|
T Consensus 87 ~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 87 FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eeEEeCCCCCHHHHHhhC
Confidence 99999998 999888764
No 127
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.64 E-value=8e-16 Score=119.28 Aligned_cols=92 Identities=25% Similarity=0.316 Sum_probs=79.8
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.|+++ ...+++++.||++||++|+.+.|.+++++.++. ++.+..+|++..+.++++|+|.++||+++|++|. .
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-A 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-c
Confidence 445554 456799999999999999999999999998873 3889999999999999999999999999998774 5
Q ss_pred EEEcCC-CHHHHHHHHHhc
Q 009096 493 KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~ 510 (543)
.++.|. +.+++.+++++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 668888 999999999864
No 128
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=4.3e-13 Score=131.72 Aligned_cols=306 Identities=16% Similarity=0.081 Sum_probs=220.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+.+.++..+.++...|++++|++.+.+....-++....+-.+|.++..+|++++|...|+..++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778889999999999999999999988888888999999999999999999999999999999999999999998887
Q ss_pred HHhC-----CHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHH
Q 009096 127 FRLG-----QVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTV-LRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 127 ~~~g-----~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
.... +.+.-...|++... -|..... . .+...+..-..+... ..++...+..+ .|.++..+-
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---~------rl~L~~~~g~~F~~~~~~yl~~~l~Kg---vPslF~~lk 150 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAP---R------RLPLDFLEGDEFKERLDEYLRPQLRKG---VPSLFSNLK 150 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccch---h------HhhcccCCHHHHHHHHHHHHHHHHhcC---CchHHHHHH
Confidence 4433 34444555554432 1111100 0 000111111233332 23334444443 244455544
Q ss_pred HHHHHccChhHHHHHhh---cCCCC----CC----CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 200 EAHLKLHQNEDADSCLS---NMPKF----EH----YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~---~~~~~----~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
.+|.......-...++. ..++. .+ ....+...+.+++.+++.|...|++++|++++++++...|..++.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 44443322221112221 11111 11 112333445677888999999999999999999999999999988
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC--C-
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN--Y- 345 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~- 345 (543)
+. ..|.++.+.|++.+|.+.++.+-.+++.|-.+-...+..+++.|+.++|.+.+..-...+-+ .
T Consensus 231 y~------------~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 231 YM------------TKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred HH------------HHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 64 37999999999999999999999999999999999999999999999999999887665421 1
Q ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 346 ------TKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 346 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
.......|.+|.+.|++..|++.|..+.+..
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1223567999999999999999999888764
No 129
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.64 E-value=1.2e-15 Score=118.63 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=79.6
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-eEE
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-EKL 492 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~ 492 (543)
...+.+.+ ..+.++++.||++||++|+.+.|.+.++++++++ +.|+.+|+++++.++++|+|.++||+++|++| +..
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcce
Confidence 34555555 4456699999999999999999999999999865 99999999999999999999999999999998 555
Q ss_pred EEEcCC-CHHHHHHHH
Q 009096 493 KEMINP-SHQFLEDSA 507 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~ 507 (543)
..+.|. +.++|.+|+
T Consensus 87 ~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 87 QDYQGGRTAKAIVSAA 102 (103)
T ss_pred eecCCCCCHHHHHHHh
Confidence 667787 999998876
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=3.9e-15 Score=122.38 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=113.6
Q ss_pred HHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 009096 212 DSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS 291 (543)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~ 291 (543)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++ ..+|.++...
T Consensus 13 ~~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------------~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH------------IALAGTWMML 71 (144)
T ss_pred HHHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------------HHHHHHHHHH
Confidence 35667777777764 22348899999999999999999999999999886 3479999999
Q ss_pred CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 292 RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 292 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+.++|.+...+
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887654
No 131
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.64 E-value=9e-14 Score=134.69 Aligned_cols=239 Identities=22% Similarity=0.172 Sum_probs=150.2
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCC-ChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC--
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP-DPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG-- 187 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-- 187 (543)
..|.-..+...++..|...|+|++|+..++++++.. +......+.........|..|...+++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345544444445555555555555555555554410 00000111111222245666666666666666666666552
Q ss_pred ---CCC--CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 188 ---VDS--SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 188 ---p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
+++ ...++.+++ .+|...|++++|..++++++++.
T Consensus 274 ~~G~~h~~va~~l~nLa----------------------------------------~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLA----------------------------------------VLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred hcCCCCHHHHHHHHHHH----------------------------------------HHHhccCChHHHHHHHHHHHHHH
Confidence 111 123344444 44455555555555555544332
Q ss_pred -----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------CCChhHHhHHHHHHHHccCHH
Q 009096 263 -----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD--------SYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 263 -----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~ 329 (543)
...+.+...+ .+++.++..++++++|+.++++++++. |.-+..+.++|.+|..+|+++
T Consensus 314 ~~~~~~~~~~v~~~l---------~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQL---------SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHhhccChHHHHHHH---------HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 3334443333 458999999999999999999998762 233678999999999999999
Q ss_pred HHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCChH---HHHHHHHHHHHHH
Q 009096 330 NSIEDCNVALRIQ--------PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE----LPGDNE---VAESLHNAQVALK 394 (543)
Q Consensus 330 ~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~---~~~~l~~~~~~l~ 394 (543)
+|.++|++++.+. +.....+.++|..+.+++++.+|.+.|..+..+ .|+++. ...+|..++..++
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 9999999999874 233467889999999999999999999998876 455544 4556666666666
Q ss_pred hhhh
Q 009096 395 KSRG 398 (543)
Q Consensus 395 ~~~~ 398 (543)
+...
T Consensus 465 ~~e~ 468 (508)
T KOG1840|consen 465 NYEA 468 (508)
T ss_pred cHHH
Confidence 5544
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=1.8e-14 Score=124.95 Aligned_cols=130 Identities=17% Similarity=0.125 Sum_probs=120.0
Q ss_pred hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH-H
Q 009096 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW-S 323 (543)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~ 323 (543)
.++.++++..++++++.+|++...|. .+|.++...|++++|+..|+++++++|+++.++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~------------~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWA------------LLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999874 4799999999999999999999999999999999999975 6
Q ss_pred HccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 324 KMGL--WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 324 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
..|+ +++|...++++++.+|+++.+++.+|.++...|++++|+.+|++++++.|.+.+-...+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 7787 59999999999999999999999999999999999999999999999999876655544
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.62 E-value=2.1e-14 Score=117.96 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=118.9
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHH
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSI 332 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 332 (543)
+.|++++..+|++.... ..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQI------------YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHH------------HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999987664 347999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 333 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
..+++++..+|+++..++.+|.++...|++++|+..|+++++++|++.........+...+
T Consensus 72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 72 DAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887776665554
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.61 E-value=1.6e-13 Score=140.49 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=44.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR---ELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~l 393 (543)
+=.+|...++|++++..++.+++++|.|..+...++.||. +.|.. ...|+.+++ +.-....+...+..-...+
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 4467777788888888888888888888888888888886 33332 333444433 3333344444444443333
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.60 E-value=5.9e-14 Score=112.35 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
++.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.|++..|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+.+.|.+.|+.++...-.+++-.....++...+.
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred CHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999999998655555544555555443
No 136
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.4e-11 Score=113.41 Aligned_cols=354 Identities=12% Similarity=0.023 Sum_probs=248.5
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR 117 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (543)
+..+..+..+...|...|.--..++++..|...|++||..+..+...|...+.+-++..+...|...+.+|+.+-|.-..
T Consensus 63 Ed~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq 142 (677)
T KOG1915|consen 63 EDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ 142 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence 33445556677788888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHH------------------------HHHHHHHHhhhhcCC
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSF------------------------EKHLNRCAESRKIGD 172 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 172 (543)
.|+....+-..+|+...|...|++-+. .|+...+...... ..++..+..-.+.|+
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999888 7777666443322 234445555567788
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCCh--hHH------------------
Q 009096 173 WKTVLRETDAAIAIGVDSS--PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP--SQV------------------ 230 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~------------------ 230 (543)
..-|...|.++++.-.++. ..++...|..-..++.++.|..+|+-++..-|.+.. ...
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 8888888888877644331 122333344444555666666666655555444311 000
Q ss_pred ------------------HHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHH---HH
Q 009096 231 ------------------KFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN---LF 289 (543)
Q Consensus 231 ------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~---~~ 289 (543)
.+.+|+..-.+....|+.+.-.+.|++|+...|....-.. +.. .+ +.-+-.+ -.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~-W~R--YI--YLWinYalyeEl 377 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY-WRR--YI--YLWINYALYEEL 377 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH-HHH--HH--HHHHHHHHHHHH
Confidence 0112222244555567777777888888766665332111 100 00 0111122 24
Q ss_pred hcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
...+.+.+.+.|+.++++-|+. +.+|...|....++.+...|.+.+-.|+-..|.+ ..+-..-.+-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 5678888899999999988865 5677777777888888888888888888888774 3444455566677888888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 366 VRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 366 ~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
...|++.++..|.+-.+|...+.....++...
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence 88888888888888888877777777665443
No 137
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.2e-15 Score=141.73 Aligned_cols=106 Identities=24% Similarity=0.343 Sum_probs=95.8
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.|...|..+..++|.||||||++|+.+.|.+++.+..+ +.+.+++||++++..+|.+|+|+++||+.+|+|
T Consensus 29 ~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 29 VLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred EEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEec
Confidence 4566889999999999999999999999999999999998877 359999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
|+....+.|. ..+.|..|+++..+|+...-
T Consensus 109 G~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l 139 (493)
T KOG0190|consen 109 GRSAQDYNGPREADGIVKWLKKQSGPASKTL 139 (493)
T ss_pred CCcceeccCcccHHHHHHHHHhccCCCceec
Confidence 9987778888 99999999999888765443
No 138
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1e-12 Score=116.47 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=130.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcch-hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
+....+|..|+..++-.+..+.+.. ..-..+|.|++.+|+|++|+..|+-+...+.-+.+.+.+||.|++.+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4567889999999988887654433 566778999999999999999999988877777889999999999999999999
Q ss_pred HHhcCCCCCCChH--------------HHhHH-----HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 137 HHLCFPGHHPDPN--------------ELLKL-----QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 137 ~~~~~a~~~~~~~--------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
..-.++-+.|-.. .+... ...+..+.++...+..-.|++|+..|.+++..+|+. ..+-..
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-IALNVY 190 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-hhhHHH
Confidence 9888776522111 11100 122345667777788889999999999999998876 445556
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCCh
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPP 227 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 227 (543)
++.||.++.-++-+.+.+.-.++..|+++-
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 799999999999888888888887777654
No 139
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.6e-11 Score=111.16 Aligned_cols=296 Identities=16% Similarity=0.086 Sum_probs=203.5
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG-YNRAHQRLASLYFR 128 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 128 (543)
.....|..-+..|+|.+|.....+.-+..+.-..++..-+.+--.+|+++.|-.++.++-+..++ .......++.+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34445666667788888888888876666655566666677777788888888888888877443 34556677778888
Q ss_pred hCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 009096 129 LGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH----L 203 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~----~ 203 (543)
.|+++.|.....++.. .|.+... ......+|...|+|.+....+.+.-+..--.+++.-...-.++ .
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~v--------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEV--------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHH--------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 8888888877777766 3333321 3334456677778887777777766654333233222111111 1
Q ss_pred HccChhHHH---HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 204 KLHQNEDAD---SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 204 ~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
+..+-..+. .+.+..-..-..++.....+ +.-+...|+.++|.+..+.+++..-+..-..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~------a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----------- 300 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAY------AERLIRLGDHDEAQEIIEDALKRQWDPRLCR----------- 300 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHH------HHHHHHcCChHHHHHHHHHHHHhccChhHHH-----------
Confidence 111111111 23333322222233322222 7778889999999999999998776655221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
-.-...-++...=++..++.++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|
T Consensus 301 ----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g 375 (400)
T COG3071 301 ----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLG 375 (400)
T ss_pred ----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcC
Confidence 112456788888999999999999999999999999999999999999999999999876 566888999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 009096 361 RWSEAVRDYEALRRE 375 (543)
Q Consensus 361 ~~~~A~~~~~~al~~ 375 (543)
+..+|.+.++.++.+
T Consensus 376 ~~~~A~~~r~e~L~~ 390 (400)
T COG3071 376 EPEEAEQVRREALLL 390 (400)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999998854
No 140
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.58 E-value=1.6e-14 Score=110.23 Aligned_cols=90 Identities=33% Similarity=0.598 Sum_probs=82.1
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 498 (543)
+...+...+++++.||++||++|+.+.|.++++..+.+++.|+.+|++....++.+|+|.++||++++.+|+.+..+.|.
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 44555566899999999999999999999999998877899999999999999999999999999999999999999998
Q ss_pred -CHHHHHHHHH
Q 009096 499 -SHQFLEDSAN 508 (543)
Q Consensus 499 -~~~~~~~~~~ 508 (543)
+.++|.++|+
T Consensus 83 ~~~~~l~~~i~ 93 (93)
T cd02947 83 DPKEELEEFLE 93 (93)
T ss_pred CCHHHHHHHhC
Confidence 8899998874
No 141
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.57 E-value=6.5e-15 Score=118.56 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=82.4
Q ss_pred hhhhhccCCC-CceeeeeeCCCCccccchhHhHH---HHHhhCC-CeEEEEEeCcCc-------------HHHHHHcCCC
Q 009096 417 EKFKAAISSP-GVSLVHFKEASSEKCEEISPFVN---LLCVRYP-YVHFFKVDVEES-------------LAIAKSEGVR 478 (543)
Q Consensus 417 ~~~~~~i~~~-~~~lv~f~~~~c~~c~~~~p~l~---~l~~~~~-~~~~~~~d~~~~-------------~~~~~~~~v~ 478 (543)
+.+.++...+ ++++|.||++||++|+.+.|.+. .+...+. ++.++.+|++.. ..++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3445566667 89999999999999999999774 5555553 488999999864 6899999999
Q ss_pred cccEEEEEEC--CeEEEEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 479 TVPTFKIYKN--GEKLKEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 479 ~~Pt~~~~~~--g~~~~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
++||+++|.+ |+++.++.|+ +.+++..+|+...+..+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~~ 123 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKAY 123 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhhh
Confidence 9999999984 6999999998 99999999998876544
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.1e-12 Score=111.09 Aligned_cols=206 Identities=17% Similarity=0.024 Sum_probs=169.9
Q ss_pred CCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 171 GDWKTVLRETDAAIAIGV-----DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~p-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
.+.++.++.....+...+ ++...++-....+....|+.+-|..++++.....|.+....... |..+...
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk------am~lEa~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK------AMLLEAT 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH------HHHHHHh
Confidence 344555555554443321 22245556677788899999999999999988888886543333 8889999
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|++++|+++|+..++-+|.+..++. ..-.+...+|+--+|++.+.+-++..+.|.++|..++.+|...
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~K------------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRK------------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHH------------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 9999999999999999999987753 2344566778888999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG---RWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
|+|++|.-++++.+-++|.++..+..+|.+++-+| +++-|.++|.++++++|.+-..+..+..+...+.
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877 6788999999999999988888877777666665
No 143
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.57 E-value=7.8e-15 Score=113.88 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=82.5
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC---CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-eE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY---PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-EK 491 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~~ 491 (543)
...+.+.+..++++++.||++||++|+.+.|.+.++++.+ .++.|+.+|++++..++++|+|.++||+++|.+| +.
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 84 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKE 84 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcc
Confidence 3567777777779999999999999999999999999988 4599999999999999999999999999999977 88
Q ss_pred EEEEcCC-CHHHHHHHH
Q 009096 492 LKEMINP-SHQFLEDSA 507 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~ 507 (543)
+.++.|. +.+++.+++
T Consensus 85 ~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 85 PVKYEGPRTLESLVEFI 101 (101)
T ss_pred cccCCCCcCHHHHHhhC
Confidence 8888888 888887764
No 144
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.57 E-value=2.1e-12 Score=125.39 Aligned_cols=277 Identities=13% Similarity=-0.077 Sum_probs=195.2
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH----hcCCCChhHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV----RLDPGYNRAHQR 121 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~ 121 (543)
...+..+..|..+...|++++|+..++++++.+|++..++.. +..+...|++..+.....+++ ..+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 456678889999999999999999999999999999887776 666666655544444444444 456777778888
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS---PQLVAC 197 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~ 197 (543)
+|.++...|++++|+..+++++. .|+. ...+..++.++...|++++|+..+.+++...|... ...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 99999999999999999999998 3333 23467788999999999999999999999876432 234557
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHH--H-HHHhhcCCCcHHHHHHHHh
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSS--A-EKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~--~-~~al~~~p~~~~~~~~l~~ 274 (543)
++.++...|++++|+..+++++...|........... ......+...|....+... . .......|........
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~--- 267 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA-ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND--- 267 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH-HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH---
Confidence 8999999999999999999997766632222111000 0112222333332222222 1 1111111221111100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---------ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY---------NSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
...+.++...|+.++|...++........ ...+....+.++...|++++|++.+..++.+.
T Consensus 268 -------~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 268 -------LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred -------HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 13678889999999999999887653322 25667778999999999999999999999764
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.56 E-value=3.2e-13 Score=123.88 Aligned_cols=263 Identities=18% Similarity=0.141 Sum_probs=176.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCc-chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q 009096 56 NEMYRKGNFVEALKLYDKAISMSPE-NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (543)
+.++-.|+|..++..++ ....+|. .......+.++++.+|+++..+...... .+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 34556777777776666 2233332 3455667777777777777665444331 12233444445544443334444
Q ss_pred HHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHH
Q 009096 135 ARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSC 214 (543)
Q Consensus 135 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~ 214 (543)
++..++..+... .+...+.+....|.++...|++++|++.
T Consensus 85 ~l~~l~~~~~~~----------------------------------------~~~~~~~~~~~~A~i~~~~~~~~~AL~~ 124 (290)
T PF04733_consen 85 ALEELKELLADQ----------------------------------------AGESNEIVQLLAATILFHEGDYEEALKL 124 (290)
T ss_dssp HHHHHHHCCCTS-------------------------------------------CHHHHHHHHHHHHCCCCHHHHHHCC
T ss_pred HHHHHHHHHHhc----------------------------------------cccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444443333211 0111234455567888888999999988
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC--
Q 009096 215 LSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR-- 292 (543)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-- 292 (543)
+.+. .+ +.......+++..+++++.|.+.++.+.+.+.+...... ..+++....|
T Consensus 125 l~~~-----~~------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL------------a~awv~l~~g~e 181 (290)
T PF04733_consen 125 LHKG-----GS------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL------------AEAWVNLATGGE 181 (290)
T ss_dssp CTTT-----TC------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH------------HHHHHHHHHTTT
T ss_pred HHcc-----Cc------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH------------HHHHHHHHhCch
Confidence 8765 22 223333477899999999999999999888877654431 1344444444
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRW-SEAVRDYEA 371 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~ 371 (543)
++.+|...|++..+..+.++.+++.++.|+..+|+|++|.+.+++++..+|++++++.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6999999999998888888999999999999999999999999999999999999999999999999998 677789999
Q ss_pred HHhcCCCChHHHHH
Q 009096 372 LRRELPGDNEVAES 385 (543)
Q Consensus 372 al~~~p~~~~~~~~ 385 (543)
....+|+++-+...
T Consensus 262 L~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 262 LKQSNPNHPLVKDL 275 (290)
T ss_dssp CHHHTTTSHHHHHH
T ss_pred HHHhCCCChHHHHH
Confidence 99999999877643
No 146
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.56 E-value=1.4e-14 Score=112.86 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=78.0
Q ss_pred hhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCCC---eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe-
Q 009096 416 LEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE- 490 (543)
Q Consensus 416 ~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~---~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~- 490 (543)
.+.|.+.+. .+++++|.||++||++|+.+.|.++++++.+++ +.|+++|++.+ +++..++|.++||+++|++|+
T Consensus 7 ~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~ 85 (104)
T cd02995 7 GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDK 85 (104)
T ss_pred hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCc
Confidence 346666554 457999999999999999999999999998754 89999999987 588999999999999999887
Q ss_pred -EEEEEcCC-CHHHHHHHH
Q 009096 491 -KLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 491 -~~~~~~g~-~~~~~~~~~ 507 (543)
...++.|. +.++|.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 86 SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCceEccCCcCHHHHHhhC
Confidence 56778888 888888775
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=2.7e-12 Score=131.63 Aligned_cols=237 Identities=9% Similarity=-0.048 Sum_probs=184.5
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
..+|.+.+++..++..+...+++++|+..++.+++.+|+...+++.+|.++++.+++++|.-. .++...+.+... ..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hH
Confidence 456788888888988888889999999999988888998888899999988888888887776 666665544321 22
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA 201 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~ 201 (543)
.-..+..++++..- -.+++.+|.+|.++|++++|...|+++++.+|++ +.+.+++|..
T Consensus 102 ve~~~~~i~~~~~~---------------------k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~ 159 (906)
T PRK14720 102 VEHICDKILLYGEN---------------------KLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATS 159 (906)
T ss_pred HHHHHHHHHhhhhh---------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHH
Confidence 22222222222111 1247788999999999999999999999999887 8889999999
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh-HH----
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN-VK---- 276 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~---- 276 (543)
|... +.++|+.++.+++. .+...+++.++.+...+.+..+|++.+....+.+ +.
T Consensus 160 ~ae~-dL~KA~~m~~KAV~--------------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIY--------------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHh-hHHHHHHHHHHHHH--------------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 9999 99999999988843 3667779999999999999999998876433222 11
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 277 ---MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 277 ---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
.+..+..+=..|...++|++++..++.+++.+|.+..+...++.||..
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 111123344778889999999999999999999999999999999983
No 148
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.55 E-value=2.4e-14 Score=111.90 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=78.9
Q ss_pred hhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcC-cHHHHHHcCCCcccEEEEEECC-e
Q 009096 417 EKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEE-SLAIAKSEGVRTVPTFKIYKNG-E 490 (543)
Q Consensus 417 ~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~-~~~~~~~~~v~~~Pt~~~~~~g-~ 490 (543)
+.++..+.. ++++++.||++||++|+.+.|.+.+++++++ ++.|+.+|++. ++.++++|+|.++||+++|++| +
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCC
Confidence 556666654 4489999999999999999999999999885 49999999999 9999999999999999999877 6
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 009096 491 KLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~ 507 (543)
...++.|. +.++|.++|
T Consensus 88 ~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 88 EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CccccCCccCHHHHHhhC
Confidence 66778887 988888774
No 149
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.55 E-value=1.5e-14 Score=111.92 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=74.9
Q ss_pred eehhhhhhhccCC--CCceeeeeeC-------CCCccccchhHhHHHHHhhCC-CeEEEEEeCcC-------cHHHHHHc
Q 009096 413 ISSLEKFKAAISS--PGVSLVHFKE-------ASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEE-------SLAIAKSE 475 (543)
Q Consensus 413 ~~~~~~~~~~i~~--~~~~lv~f~~-------~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~-------~~~~~~~~ 475 (543)
+.+.+.|.+.+.. +++++|.||+ +||++|+.+.|.++++..+++ ++.|++||+++ +.+++..+
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 3455666666654 6799999999 999999999999999999998 59999999976 45899999
Q ss_pred CCC-cccEEEEEECCeEEEEEcCCCHHHHHHHH
Q 009096 476 GVR-TVPTFKIYKNGEKLKEMINPSHQFLEDSA 507 (543)
Q Consensus 476 ~v~-~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~ 507 (543)
+|. ++||+++|++|+.+..-.-.+.+.+..++
T Consensus 86 ~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999 99999999888543322212555555543
No 150
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.3e-11 Score=112.10 Aligned_cols=349 Identities=11% Similarity=0.031 Sum_probs=203.1
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
|.+.++.++..+..+...|...+.+-++.++...|...+++|+.+-|.-...|+.....-..+|+...|.+.|++-++..
T Consensus 92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~ 171 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE 171 (677)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 56667788888888999999999999999999999999999999999888888888888888899999999999888887
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHH----------------------------HHHH
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEK----------------------------HLNR 163 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~----------------------------~~~~ 163 (543)
|+ ..+|......-.+.++.+.|...|++.+- +|+...+......+. ...-
T Consensus 172 P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 172 PD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAF 250 (677)
T ss_pred Cc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 75 24444444444444444444444444443 333333221111100 0000
Q ss_pred HHhhhhcCCHHHHHH--------------------------------------------HHHHHHHcCCCCCHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLR--------------------------------------------ETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~--------------------------------------------~~~~~l~~~p~~~~~~~~~~a 199 (543)
+..-..++.++.|.. .|++.++.+|-+ -+.|+..-
T Consensus 251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n-YDsWfdyl 329 (677)
T KOG1915|consen 251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN-YDSWFDYL 329 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC-chHHHHHH
Confidence 000011111111111 133344445544 45566666
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChh--HH-HHHHHHHHH-HHHHhhcChHHHHHHHHHHhhcCCCcH----HHHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPS--QV-KFLVWLLKL-MFNISELRFENAVSSAEKAGLLDYSNV----EIASV 271 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~-~~~~~~~~a-~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~ 271 (543)
.+-...|+.+.-.+.|++++...|....- +. .+..|++.+ ..-....+.+.+.+.|+.++++-|... .+|.+
T Consensus 330 rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlm 409 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLM 409 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 66677788888888888887766653221 11 112333322 223456677777777777777777543 22222
Q ss_pred HHhH-------HHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH
Q 009096 272 LTNV-------KMVVRA--------------RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 272 l~~~-------~~~~~~--------------~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 330 (543)
+... ..+... ...-.+-.++++++....+|++-++..|.+..+|...|.+-..+|+.+.
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 2110 000000 0011223445666666677777777777777777777777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHH--HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 331 SIEDCNVALRIQPNYTKALL--RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
|...|+-|+....-+..-+. ..-..-...|.++.|...|++.|+..+..+ +|.
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWi 544 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWI 544 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHH
Confidence 77777766655433322222 222333455667777777777776665544 443
No 151
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=1.4e-11 Score=134.79 Aligned_cols=329 Identities=13% Similarity=0.021 Sum_probs=236.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc---------chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE---------NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-- 115 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 115 (543)
++......+..+...|++++|...+..+....+. .......+|.++...|++++|...+++++...|..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 3445567788888999999999999988764221 13455667889999999999999999999865542
Q ss_pred ---hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC---
Q 009096 116 ---NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD--- 189 (543)
Q Consensus 116 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--- 189 (543)
..+...+|.++...|++++|...+.+++....... ........+..++..+...|++++|...+.+++.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 23567789999999999999999988875100000 00112334567788899999999999999998876321
Q ss_pred --C--CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 190 --S--SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 190 --~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
. ....+..+|.++...|++++|...+.+++......... .....+..+|.++...|++++|...+.++..+.+..
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 1 12335567889999999999999999988765433211 223455567999999999999999999997654332
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh----HHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----LYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.......... .......+...|+.+.|...+.......+.... .+..++.++...|++++|...+++++..
T Consensus 646 ~~~~~~~~~~-----~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 646 RYHSDWIANA-----DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred cccHhHhhHH-----HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1100000000 000124455689999999998876653332222 2567899999999999999999999886
Q ss_pred CC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 342 QP------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 342 ~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.. ....++..+|.++...|+.++|...+.+|+++......+
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 32 234678899999999999999999999999998765543
No 152
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.52 E-value=3.9e-14 Score=110.61 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=75.0
Q ss_pred hhhhhcc---CCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-cHHHHH-HcCCCcccEEEEEECC
Q 009096 417 EKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-SLAIAK-SEGVRTVPTFKIYKNG 489 (543)
Q Consensus 417 ~~~~~~i---~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-~~~~~~-~~~v~~~Pt~~~~~~g 489 (543)
..|+..+ ..++++++.||++||++|+.+.|.+++++..+. ++.|+.+|++. ...++. .++|.++||+++|++|
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 4555554 347899999999999999999999999999886 38999999997 577886 4999999999999865
Q ss_pred -eEEEEEcC-C-CHHHHHHHH
Q 009096 490 -EKLKEMIN-P-SHQFLEDSA 507 (543)
Q Consensus 490 -~~~~~~~g-~-~~~~~~~~~ 507 (543)
.....+.| . +.+.|..||
T Consensus 89 ~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 89 SRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCceeccCCCCCHHHHHhhC
Confidence 55667777 3 888887764
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.6e-13 Score=119.71 Aligned_cols=107 Identities=36% Similarity=0.586 Sum_probs=101.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+...++.+...|..+++.++|.+|+..|.+||+++|.|+..|.++|.+|.++|.++.|++.++.++.++|.+..+|.+||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCC-CCChHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH-HPDPNE 150 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~ 150 (543)
.+|..+|++++|++.|++++. .|+...
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 999999999999999999998 666553
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.51 E-value=4.3e-13 Score=127.89 Aligned_cols=116 Identities=22% Similarity=0.396 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+...|..++..|+|++|+++|+++++++|+++.+++++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
++++|+..|+++++++|+++.+...+..+...++..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888653
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=2.9e-13 Score=108.37 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=99.1
Q ss_pred ccc-ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNV-AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
... +++-+.++..|..+++.|++++|...|+-+...+|.+...|++||.|+..+|+|.+|+..|.+++.++|+++.+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 6788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++|.|+...|+.+.|++.|+.++.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998886
No 156
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.51 E-value=5.3e-14 Score=107.59 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=76.6
Q ss_pred hhhhhhhccCCCCceeeeeeC--CCCc---cccchhHhHHHHHhhCCCeEEEEEeC-----cCcHHHHHHcCCC--cccE
Q 009096 415 SLEKFKAAISSPGVSLVHFKE--ASSE---KCEEISPFVNLLCVRYPYVHFFKVDV-----EESLAIAKSEGVR--TVPT 482 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~--~~c~---~c~~~~p~l~~l~~~~~~~~~~~~d~-----~~~~~~~~~~~v~--~~Pt 482 (543)
+...|++.+...+.++|.|++ |||+ +|..+.|.+.+.+. .+.+++||+ .++.+||++|||. ++||
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPT 83 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDKESYPV 83 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCcCCCCE
Confidence 457788899999999999999 9999 77777776655443 389999999 4578899999999 9999
Q ss_pred EEEEECCe--EEEEEcC--CCHHHHHHHHHhc
Q 009096 483 FKIYKNGE--KLKEMIN--PSHQFLEDSANLA 510 (543)
Q Consensus 483 ~~~~~~g~--~~~~~~g--~~~~~~~~~~~~~ 510 (543)
+++|++|. ....+.| .+.+.|.++|++.
T Consensus 84 l~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 84 IYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999995 3345666 4999999999875
No 157
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=3.2e-12 Score=109.65 Aligned_cols=175 Identities=18% Similarity=0.044 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
+...+-+....+|++ ..+ ..++..+...|+-+.+.....++...+|.+...... .|...+..|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d-~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~------~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPED-LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA------QGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcch-HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH------HHHHHHHhcchHHHHHHH
Confidence 444555555566655 444 666777777777777777777766666666443222 266677777777777777
Q ss_pred HHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHH
Q 009096 256 EKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 256 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
.++..+.|+++.++.. +|.+|.+.|++++|...|.+++++.|.++.+..|+|..+.-.|+++.|..++
T Consensus 124 rkA~~l~p~d~~~~~~------------lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 124 RKAARLAPTDWEAWNL------------LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHhccCCCChhhhhH------------HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 7777777777776543 5777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 336 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
..+....+.+..+..+++.+....|++++|.....
T Consensus 192 l~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 192 LPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777666677777777777777777777766543
No 158
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.50 E-value=1.6e-13 Score=101.49 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=69.9
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
.+..||++||++|+.+.|.+++++++++. +.+..+|+++.+++++++||.++||+++ ||+. ++.|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 35689999999999999999999998864 9999999999999999999999999986 8873 77798 99999999
Q ss_pred HHhc
Q 009096 507 ANLA 510 (543)
Q Consensus 507 ~~~~ 510 (543)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 9864
No 159
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=2.3e-12 Score=111.88 Aligned_cols=155 Identities=13% Similarity=0.066 Sum_probs=127.1
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
.....|...|+++.......+... |.. -+...++.++++..++++++.+|++... |..+|.+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~--~~~----------~~~~~~~~~~~i~~l~~~L~~~P~~~~~------w~~Lg~~ 82 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD--PLH----------QFASQQTPEAQLQALQDKIRANPQNSEQ------WALLGEY 82 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC--ccc----------cccCchhHHHHHHHHHHHHHHCCCCHHH------HHHHHHH
Confidence 344567888888886544432221 110 1123677889999999999999999664 5555999
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCChhHHhHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL-FSSRR--YSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
+...|++++|+..|+++++++|++..++. .+|.++ ...|+ +++|.+.++++++.+|+++.+++++
T Consensus 83 ~~~~g~~~~A~~a~~~Al~l~P~~~~~~~------------~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 83 YLWRNDYDNALLAYRQALQLRGENAELYA------------ALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 99999999999999999999999999863 367764 67777 5999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
|.++...|++++|+..+++++++.|.+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999988765
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=1e-11 Score=122.05 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=187.7
Q ss_pred ccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-----CHHHH
Q 009096 27 SCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-----RLTEA 101 (543)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A 101 (543)
++....|+..+........+....+-.+|.++++.|++++|...|...|+.+|++...+..+..+..... +.+.-
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 3444456666766667777788889999999999999999999999999999999999999998884433 46667
Q ss_pred HHHHHHHHhcCCCCh--------------------------------hHHHHHHHHHHHhCCHHHHHHHhcC---CCC--
Q 009096 102 VSDCEEAVRLDPGYN--------------------------------RAHQRLASLYFRLGQVENARHHLCF---PGH-- 144 (543)
Q Consensus 102 ~~~~~~al~~~p~~~--------------------------------~~~~~la~~~~~~g~~~~A~~~~~~---a~~-- 144 (543)
...|++.....|... .....+-.+|....+..-....+.. .++
T Consensus 97 ~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 97 LELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhccc
Confidence 778887766665421 1122222222211111111111111 111
Q ss_pred ---CCCh--HHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCC
Q 009096 145 ---HPDP--NELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP 219 (543)
Q Consensus 145 ---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 219 (543)
.... ........+..++-++..+...|++++|+.+.+++|+..|.. ++.+...|.++-..|++.+|...++.+-
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 000001123456778888999999999999999999999987 8999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 009096 220 KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS 299 (543)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~ 299 (543)
.+++.+-..-... +..+.+.|+.++|.+.+....+.+.+... -+......--....|.++.+.|++..|++
T Consensus 256 ~LD~~DRyiNsK~------aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~---~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 256 ELDLADRYINSKC------AKYLLRAGRIEEAEKTASLFTREDVDPLS---NLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred hCChhhHHHHHHH------HHHHHHCCCHHHHHHHHHhhcCCCCCccc---CHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999884433333 77888999999999999877655421111 01111111112457999999999999999
Q ss_pred HHHHHhcc
Q 009096 300 AYGEGLKY 307 (543)
Q Consensus 300 ~~~~al~~ 307 (543)
.|..+.+.
T Consensus 327 ~~~~v~k~ 334 (517)
T PF12569_consen 327 RFHAVLKH 334 (517)
T ss_pred HHHHHHHH
Confidence 99887764
No 161
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=3.3e-12 Score=130.28 Aligned_cols=133 Identities=11% Similarity=-0.041 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
+..+|.+....|++++|...++.++++.|++..++. +++.++.+.+++++|+..+++++..+|+++.+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~------------~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI------------LMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH------------HHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 333477888888888888888888888888877753 35777888888888888888888888888888
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++....-
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 88888888888888888888888888778888888888888888888888888888888775543
No 162
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.49 E-value=1.8e-12 Score=125.54 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=189.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
....-..++.++...|-...|+..|++. ..|-....+|...|+..+|.....+-++.+| . +.+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d-~~l 459 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-D-PRL 459 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-c-chh
Confidence 3445567899999999999999998764 4577788899999999999999999888433 3 567
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
|..+|.+.....=|++|.++.+..-.. +-...|......++|+++.++++..++++|-....|
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar------------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~w----- 522 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR------------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTW----- 522 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH------------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHH-----
Confidence 777777777777777777776654322 112225556678999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
+.+|.+..+.++++.|.++|..++.++|++.++|+|++.+|.++++-.+|...++++++.+-++...|-|.-.
T Consensus 523 -------f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 523 -------FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred -------HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCC
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+..+.|.+++|++.|.+.+.+..+
T Consensus 596 vsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 596 VSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hhhhcccHHHHHHHHHHHHHhhhh
Confidence 999999999999999999887544
No 163
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.48 E-value=3.6e-12 Score=109.37 Aligned_cols=169 Identities=12% Similarity=0.059 Sum_probs=150.0
Q ss_pred hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHH
Q 009096 209 EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL 288 (543)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~ 288 (543)
..+...+-.....+|++... .. .+..+...|+-+.+.....++...+|.+..... ..|...
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~------~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~------------~~gk~~ 110 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AK------LATALYLRGDADSSLAVLQKSAIAYPKDRELLA------------AQGKNQ 110 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HH------HHHHHHhcccccchHHHHhhhhccCcccHHHHH------------HHHHHH
Confidence 33666666667778887554 33 388899999999999999999999999887742 268999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 289 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+..|+|.+|+..++++..+.|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..+
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred HHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 369 YEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 369 ~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
+..+....+.+..+.+++..+.......
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 9999999999999999998776655443
No 164
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=1.1e-10 Score=105.85 Aligned_cols=276 Identities=16% Similarity=0.102 Sum_probs=209.2
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+...-.+..-+...-++|+++.|-.++.++-+..+++ ......++.+....|+++.|.....++++..|.++....
T Consensus 112 e~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlr 191 (400)
T COG3071 112 EHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLR 191 (400)
T ss_pred hcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHH
Confidence 3444455677777888889999999999999999985443 567788999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK 198 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 198 (543)
....+|...|++.+....+.+..+ -.++.....+.. ..+...-......+..+.-...++..-.. -...+.+....
T Consensus 192 La~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~ 269 (400)
T COG3071 192 LALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAY 269 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHH
Confidence 999999999999999998877766 222222222211 11221111111222222211222222111 12336677788
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
+.-+...|+.++|.+....+++..-+.. +..+ .-....++...-++..++.++..|+++..+.
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~-------- 332 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS-------- 332 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChh-----HHHH----HhhcCCCCchHHHHHHHHHHHhCCCChhHHH--------
Confidence 9999999999999999999998776653 1111 1245678899999999999999999997653
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.+|..+++.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|...+++++.+
T Consensus 333 ----tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 333 ----TLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ----HHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3799999999999999999999999886 778899999999999999999999999854
No 165
>PHA02125 thioredoxin-like protein
Probab=99.47 E-value=2.4e-13 Score=97.58 Aligned_cols=70 Identities=17% Similarity=0.369 Sum_probs=61.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLEDSA 507 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~ 507 (543)
++.|+++||++|+.+.|.|+++. +.++++|.++..+++.+|+|.++||++ +|+.+.++.|+ +..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 68999999999999999998763 568899999999999999999999987 79999999998 446776654
No 166
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=1e-11 Score=126.80 Aligned_cols=151 Identities=9% Similarity=-0.079 Sum_probs=134.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 181 ~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
.......|.. +.++.++|.+....|.+++|...++.++++.|++......+ +.++.+.+++++|+..+++++.
T Consensus 76 ~~~~~~~~~~-~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~------a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 76 LDYVRRYPHT-ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM------LRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHhh
Confidence 3334445655 88999999999999999999999999999999996654444 9999999999999999999999
Q ss_pred cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 261 LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 261 ~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+|++..... .+|.++.+.|++++|+++|++++..+|+++.++..+|.++...|+.++|...|+++++
T Consensus 149 ~~p~~~~~~~------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 149 GGSSSAREIL------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred cCCCCHHHHH------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999863 4799999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHH
Q 009096 341 IQPNYTKALL 350 (543)
Q Consensus 341 ~~p~~~~~~~ 350 (543)
...+-...+.
T Consensus 217 ~~~~~~~~~~ 226 (694)
T PRK15179 217 AIGDGARKLT 226 (694)
T ss_pred hhCcchHHHH
Confidence 8766555543
No 167
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.45 E-value=2.9e-13 Score=105.11 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCC--cccEEEEEEC--CeEEEEEcCC-C
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVR--TVPTFKIYKN--GEKLKEMINP-S 499 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~-~ 499 (543)
+.++++.|+++||++|..+.|.++++++++.+ +.|+.+|+++++.+++.|||. ++||++++++ |+......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 67999999999999999999999999999976 999999999999999999999 9999999998 7777767777 9
Q ss_pred HHHHHHHHHhc
Q 009096 500 HQFLEDSANLA 510 (543)
Q Consensus 500 ~~~~~~~~~~~ 510 (543)
.+.|.++|+++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 168
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.45 E-value=1.2e-12 Score=102.17 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=84.8
Q ss_pred hhhhhccCCCCceeeeeeC--CCCccccchhHhHHHHHhhCC-C-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVNLLCVRYP-Y-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~~l~~~~~-~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
...+..+...+..++.|-. ..++-+-.+.=+|++++++|+ + ++|++||+|+++.++.+|||+++||+++|+||+.+
T Consensus 25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v 104 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR 104 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence 3444555566666666665 467888888889999999998 3 89999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
.+++|. +.+++.++|++++..++
T Consensus 105 ~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 105 GVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEEeCcCCHHHHHHHHHHHhcCcC
Confidence 999999 99999999999886653
No 169
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.45 E-value=2.2e-13 Score=106.76 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=63.8
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCC---C-eEEEEEeCc--CcHHHHHHcCCCcccEEEEEEC
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---Y-VHFFKVDVE--ESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
.+.|.+.+ ..++++++.||++||++|+.+.|.+++++.++. + +.|..+|++ .++.++++|+|+++||+++|++
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~ 87 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPP 87 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECC
Confidence 34555655 445699999999999999999999999998763 3 889999975 4778999999999999999998
Q ss_pred Ce
Q 009096 489 GE 490 (543)
Q Consensus 489 g~ 490 (543)
|.
T Consensus 88 ~~ 89 (114)
T cd02992 88 FS 89 (114)
T ss_pred CC
Confidence 87
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.2e-12 Score=117.62 Aligned_cols=122 Identities=25% Similarity=0.429 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------------SILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+......|+.+++.|+|..|...|++++..-+.. ..++.|++.|+.++++|..|+..++++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3344668999999999999999999998753211 4679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhh
Q 009096 343 PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399 (543)
Q Consensus 343 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~ 399 (543)
|+|..++|+.|.++..+|+++.|+..|++++++.|+|..+...+..+....+....+
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988888765543
No 171
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=2.8e-11 Score=107.47 Aligned_cols=312 Identities=13% Similarity=0.007 Sum_probs=189.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh--------------cCC-
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR--------------LDP- 113 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 113 (543)
..-..+|.|+++.|+|++|+..|+.+.+.+.-+.+.+.++|.|++-+|.|.+|...-.++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 45567899999999999999999999987777789999999999999999999887766521 111
Q ss_pred -----------CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 114 -----------GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
+..+-...||.+.+..-.|++|++.|.+.+.. ++. .+......+.+|.++.-|+-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~e------y~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPE------YIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-Chh------hhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 11233566778888888999999999998852 111 122344556667777777777776666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccCh------------------hHHHHHhhcC----------CCCCCCCChhHHHHHH
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQN------------------EDADSCLSNM----------PKFEHYSPPSQVKFLV 234 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~------------------~~A~~~~~~~----------~~~~~~~~~~~~~~~~ 234 (543)
.++..|++ +.+...++..++++=+- +.+...++.- ++.-|.- ....-.+
T Consensus 211 YL~q~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L--~~~IPEA 287 (557)
T KOG3785|consen 211 YLRQFPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL--MKHIPEA 287 (557)
T ss_pred HHHhCCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH--HhhChHh
Confidence 66666654 33333333333322111 1111111110 0111110 0000012
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh-----------HHHHHH-----------------HHHHHH
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN-----------VKMVVR-----------------ARTRGN 286 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-----------~~~~~~-----------------~~~~g~ 286 (543)
.+++...|.++++.++|+...+..--..|.......+... ++.++. -..++.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 2222444555555555555554444444433222111100 001111 122566
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ-PNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 365 (543)
+++-..+|++-+.++...-...-++....+++|.++...|+|.+|.+.|-+.-..+ .+.......+|+||...++.+-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66777778888877777666667777888888888888889988888887765544 22334446788888888888888
Q ss_pred HHHHH
Q 009096 366 VRDYE 370 (543)
Q Consensus 366 ~~~~~ 370 (543)
...+-
T Consensus 448 W~~~l 452 (557)
T KOG3785|consen 448 WDMML 452 (557)
T ss_pred HHHHH
Confidence 77654
No 172
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=6.1e-11 Score=100.78 Aligned_cols=177 Identities=12% Similarity=0.018 Sum_probs=150.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
+....|...-|..++++.-...|.+ ..+....|..+...|++++|+++|+..++-+|.+...+..- --+...+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK------lAilka~ 133 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK------LAILKAQ 133 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH------HHHHHHc
Confidence 3345566667777777777777766 67777889999999999999999999999999996655543 4467788
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|+.-+|++.+.+.++..+.+.++|. .++.+|...|+|++|.-+|++.+-+.|.++..+..+|.+++-+
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~------------eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWH------------ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHH------------HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999984 4789999999999999999999999999999999999998877
Q ss_pred c---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 326 G---LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 326 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
| ++.-|.++|.++++++|.+..+++.+-.|....-+
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 6 47789999999999999999998888777655443
No 173
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.44 E-value=5.2e-13 Score=118.02 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=74.8
Q ss_pred CCceeeeeeC---CCCccccchhHhHHHHHhhCCCe--EEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE-EEcCC-
Q 009096 426 PGVSLVHFKE---ASSEKCEEISPFVNLLCVRYPYV--HFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK-EMINP- 498 (543)
Q Consensus 426 ~~~~lv~f~~---~~c~~c~~~~p~l~~l~~~~~~~--~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~- 498 (543)
++..++.|.+ +||++|+.+.|.+++++++++++ .++.+|.++.++++.+|+|.++||+++|+||+.+. ++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3444556777 99999999999999999999875 46666667999999999999999999999999984 89998
Q ss_pred CHHHHHHHHHhcCC
Q 009096 499 SHQFLEDSANLAPS 512 (543)
Q Consensus 499 ~~~~~~~~~~~~~~ 512 (543)
+.+++.++|+.+..
T Consensus 99 ~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 99 AGYEFAALIEDIVR 112 (215)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998753
No 174
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.43 E-value=1.3e-12 Score=107.26 Aligned_cols=109 Identities=25% Similarity=0.266 Sum_probs=104.9
Q ss_pred CCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009096 36 NNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY 115 (543)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (543)
.+++++..+|.+....+.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 116 NRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+..++.+|.++...|++++|+..|+++++
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987
No 175
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.43 E-value=2.2e-13 Score=117.26 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=79.9
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCCC
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 499 (543)
..++.++|+||+|||++|+.+.|+++++.-++++ +++.++|++..+.++.+|||+++||+.+|++|..+....|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 5678999999999999999999999999877753 889999999999999999999999999999998888776679
Q ss_pred HHHHHHHHHhcCC
Q 009096 500 HQFLEDSANLAPS 512 (543)
Q Consensus 500 ~~~~~~~~~~~~~ 512 (543)
++.|.++-.+...
T Consensus 121 Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 121 KDAIIEFAHRCAA 133 (468)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887543
No 176
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.43 E-value=8.3e-13 Score=94.79 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=60.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~ 506 (543)
.++||++||++|+.+.|.++++.++++. +.|.++| ..+.+.++||.++||+++ ||+.+ ..|. +.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 3789999999999999999999999975 7887777 234478899999999999 99888 6674 66888877
Q ss_pred HH
Q 009096 507 AN 508 (543)
Q Consensus 507 ~~ 508 (543)
++
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 63
No 177
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=4.3e-11 Score=103.89 Aligned_cols=294 Identities=14% Similarity=0.049 Sum_probs=217.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 57 EMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
.+.+..+|.+||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHccChhHHHHHh
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-DSSPQLVACKAEAHLKLHQNEDADSCL 215 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 215 (543)
.....+... +.... ......+.+.+..+|+..+....++. | .+........|.+.++.|++++|++-|
T Consensus 99 rV~~~~~D~--~~L~~-----~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 99 RVAFLLLDN--PALHS-----RVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHHHhcCC--HHHHH-----HHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHH
Confidence 988766542 11111 11222344455667777665555443 4 345677788899999999999999999
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh----cCCCcH--------HHHHHHHh-----HHHH
Q 009096 216 SNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL----LDYSNV--------EIASVLTN-----VKMV 278 (543)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~--------~~~~~l~~-----~~~~ 278 (543)
+.+++...-++...+.+ +.+++..+++..|+++..+.++ ..|+.. ++...-+. -...
T Consensus 168 qaAlqvsGyqpllAYni------ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNL------ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHhhcCCCchhHHHH------HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999887776655554 8899999999999998877763 334321 11111111 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYD--SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+++.-.+.++++.++++.|.+.+...--.. .-+|..+.+++..-. .+++.+..+-++-.+.++|--++.+.++-.+|
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334446788999999999988775432221 124677777776554 35677777778888888987678888888888
Q ss_pred HHccCHHHHHHH
Q 009096 357 EKLGRWSEAVRD 368 (543)
Q Consensus 357 ~~~g~~~~A~~~ 368 (543)
++..-|+-|...
T Consensus 321 CKNeyf~lAADv 332 (459)
T KOG4340|consen 321 CKNEYFDLAADV 332 (459)
T ss_pred hhhHHHhHHHHH
Confidence 887777766553
No 178
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.1e-09 Score=104.19 Aligned_cols=298 Identities=16% Similarity=0.045 Sum_probs=195.9
Q ss_pred HHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Q 009096 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD------------------- 112 (543)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 112 (543)
+..|.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 799999999999999999999 5566667789999999999999999999999875432
Q ss_pred -----------CC-ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC--------CCChHHHhHHHHHHHHHHHHHhhhhcCC
Q 009096 113 -----------PG-YNRAHQRLASLYFRLGQVENARHHLCFPGH--------HPDPNELLKLQSFEKHLNRCAESRKIGD 172 (543)
Q Consensus 113 -----------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (543)
|. ..+.+++.|.++...|+|.+|++.++++++ ....++............++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 346789999999999999999999999822 2222222222333346778899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH------------------------------------------------HHHHHHHHHH
Q 009096 173 WKTVLRETDAAIAIGVDSSPQL------------------------------------------------VACKAEAHLK 204 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~------------------------------------------------~~~~a~~~~~ 204 (543)
-++|...|...++.+|.+.+.. +.+.+...+.
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876442111 1122222222
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHH-----------------------------HHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQV-----------------------------KFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
.+..+.+.+...+.-...|....... .....+.++++....|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23333333332222222222100000 0112333466677777777777777
Q ss_pred HHHh--------hcC--CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCChhHHhHH
Q 009096 256 EKAG--------LLD--YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK-------YDSYNSILYCNR 318 (543)
Q Consensus 256 ~~al--------~~~--p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l 318 (543)
...+ +.. |.-..+ +-..++..++-+.|...+.+++. -.+.....+...
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~a---------------iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGA---------------IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHH---------------HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 6322 111 111111 12234555555555555555543 333334566667
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+..-.+.|+-++|...+++.++.+|++.+++..+-.+|... +.+.|..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 88888889999999999999999999999999998888776 56666654
No 179
>PTZ00102 disulphide isomerase; Provisional
Probab=99.41 E-value=8.6e-13 Score=133.10 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=89.0
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+...+...+..++.++|.||++||++|+.+.|.+++++..+ +++.|+.+|++.+..++++|+|.++||+++|++|+
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 45677778888889999999999999999999999887655 35999999999999999999999999999999998
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+ ++.|. +.+.|.+++++...++
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHhhCCC
Confidence 87 88888 9999999999987765
No 180
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.40 E-value=1.1e-12 Score=125.99 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=80.8
Q ss_pred CeEEeehhhhhhhccC---CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcH-HHH-HHcCCCccc
Q 009096 409 EVEEISSLEKFKAAIS---SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESL-AIA-KSEGVRTVP 481 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~---~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~-~~~-~~~~v~~~P 481 (543)
.+..++. +.|++.+. .+++++|+||++||++|+.+.|.|+++++++.+ +.|+++|+|.++ +++ ++|+|.++|
T Consensus 352 ~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 3444444 46777664 678999999999999999999999999999864 899999998653 444 789999999
Q ss_pred EEEEEECCeE-EEEEc-CC-CHHHHHHHHHhc
Q 009096 482 TFKIYKNGEK-LKEMI-NP-SHQFLEDSANLA 510 (543)
Q Consensus 482 t~~~~~~g~~-~~~~~-g~-~~~~~~~~~~~~ 510 (543)
|+++|++|.. ...+. |. +.+.|..||+.+
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999853 23454 45 999999999753
No 181
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.40 E-value=1.2e-12 Score=132.00 Aligned_cols=100 Identities=25% Similarity=0.403 Sum_probs=89.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+...+..++..++.++|.||++||++|+.+.|.+.+++..+ +++.|+.+|++++++++++++|.++||+++|++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc
Confidence 44677788888889999999999999999999999888765 34999999999999999999999999999999998
Q ss_pred E-EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 K-LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~-~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
. +.++.|. +.+.|.++|.+.+.++
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHhcCCC
Confidence 8 7888898 9999999999987654
No 182
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.40 E-value=3.7e-13 Score=116.25 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=87.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhh----CCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVR----YPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~----~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
.+++..+.....++|.||++||+..++++|+|++.++. +|+ +.+.+|||+....|+++|.|..+||+.+|.||.
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~ 83 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGE 83 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccc
Confidence 44566777889999999999999999999999988764 574 899999999999999999999999999999999
Q ss_pred EEEE-EcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KLKE-MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~~~-~~g~-~~~~~~~~~~~~~~~~ 514 (543)
...| +-|- +.+.+.++|++.++.+
T Consensus 84 ~~~rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 84 MMKREYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred hhhhhhccchhHHHHHHHHHHHhccH
Confidence 8874 6676 9999999999987765
No 183
>PLN02309 5'-adenylylsulfate reductase
Probab=99.38 E-value=2.1e-12 Score=123.99 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=81.8
Q ss_pred CeEEeehhhhhhhcc---CCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc-CcHHHHH-HcCCCccc
Q 009096 409 EVEEISSLEKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE-ESLAIAK-SEGVRTVP 481 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i---~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~-~~~~~~~-~~~v~~~P 481 (543)
.+..++. +.+++.+ ..+++++|.||++||++|+.+.|.++++++++. ++.|+++|++ .+..++. .|+|.++|
T Consensus 346 ~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 346 NVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 3444444 4555554 468899999999999999999999999999985 4999999999 7788886 59999999
Q ss_pred EEEEEECCeE-EEEEcC-C-CHHHHHHHHHhc
Q 009096 482 TFKIYKNGEK-LKEMIN-P-SHQFLEDSANLA 510 (543)
Q Consensus 482 t~~~~~~g~~-~~~~~g-~-~~~~~~~~~~~~ 510 (543)
|+++|++|.. ...+.| . +.+.|..||+.+
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999998853 234543 4 999999999864
No 184
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=1.9e-11 Score=118.62 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+...+|......++|.++.++++..++++|-... .|+..|.+..+.++++.|.+.|..++.++|++.+.|
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaW-- 556 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAW-- 556 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchh------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhh--
Confidence 444555666667788899999999999999888744 555569999999999999999999999999999886
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
.+++.+|...++-.+|...+++|++.+-.+..+|-|.-.+....|.+++|++.|.+.+.+.
T Consensus 557 ----------nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 557 ----------NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ----------hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 3478899999999999999999999998889999999999999999999999999988764
No 185
>PTZ00102 disulphide isomerase; Provisional
Probab=99.37 E-value=2.6e-12 Score=129.70 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=87.6
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+.. ..|.+. +..+++++|.||++||++|+.+.|.+++++..+. .+.++++|++.+..++..++|+++||+++
T Consensus 359 v~~l~~-~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 359 VKVVVG-NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILF 437 (477)
T ss_pred eEEecc-cchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEE
Confidence 444443 555554 5778899999999999999999999999998875 38899999999999999999999999999
Q ss_pred EECCeEE-EEEcCC-CHHHHHHHHHhcCCC
Q 009096 486 YKNGEKL-KEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 486 ~~~g~~~-~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|++|+.+ .++.|. +.+.+.++|+++...
T Consensus 438 ~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 438 VKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 9988655 478898 999999999998753
No 186
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.36 E-value=3.6e-12 Score=112.68 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=72.2
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
...++.||++||++|+.+.|.+++++.+++++.+.++|.+++++++.+|||.++||++++++|+. +.|. +.+++.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHH
Confidence 34555699999999999999999999998889999999999999999999999999999988864 7788 8999999
Q ss_pred HHHh
Q 009096 506 SANL 509 (543)
Q Consensus 506 ~~~~ 509 (543)
+|.+
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 9875
No 187
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.36 E-value=2.8e-13 Score=106.31 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=69.8
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC-CCeEEEEEeCcCcH-HHHHHcCCCc--ccEEEEEE-CCeE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVDVEESL-AIAKSEGVRT--VPTFKIYK-NGEK 491 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~~~~~~~d~~~~~-~~~~~~~v~~--~Pt~~~~~-~g~~ 491 (543)
+.+..+...+++++|+||++||++|+.+.|.+.+..... .+..|+.+|++..+ .+...|++.+ +||+++|. +|++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 444555567899999999999999999999998876543 23566677776554 4567999987 99999996 9999
Q ss_pred EEEEc---CC-CHHHHHHHHHhc
Q 009096 492 LKEMI---NP-SHQFLEDSANLA 510 (543)
Q Consensus 492 ~~~~~---g~-~~~~~~~~~~~~ 510 (543)
+.+++ |. +.+.+...|+..
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred chhhccCCCCccccccCCCHHHH
Confidence 88544 44 555555555543
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.35 E-value=3.3e-12 Score=115.47 Aligned_cols=263 Identities=13% Similarity=0.001 Sum_probs=159.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHH
Q 009096 88 RAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNR 163 (543)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (543)
-|.-+++.|++...+..|+.|++...++ ..+|..||.+|+.+++|++|+++-..=+. .....-..+..+.+--++
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-lar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-LARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-HHHHhcchhccccccccc
Confidence 4677889999999999999999988765 35678899999999999999886432111 000000111122223334
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLRETDAAIAIGVD-----SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+.++...|.|++|+.+..+-+..... ....+++++|.+|...|+.-.- ..|.+...
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g~---------- 162 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKGA---------- 162 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhccc----------
Confidence 44555555555555555544433211 1123334444444444331100 01100000
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------Ch
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY------NS 312 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~ 312 (543)
.-......++.|.++|..-+++..+..+.. .....+=++|+.|+-+|+|+.|+..-+.-+.+... .-
T Consensus 163 -f~~ev~~al~~Av~fy~eNL~l~~~lgDr~------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeR 235 (639)
T KOG1130|consen 163 -FNAEVTSALENAVKFYMENLELSEKLGDRL------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAER 235 (639)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHhhhHH------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 000001123445555555554433322221 12222345788999999999999988776665432 24
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRI----QPN--YTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
.++.++|.|+.-+|+++.|++.|++.+.+ ... .+..-|.+|..|.-..++++|+.++.+-+.+..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999997654 222 345678999999999999999999999887643
No 189
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=8.5e-11 Score=109.54 Aligned_cols=150 Identities=16% Similarity=0.048 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
..+++..+..++..|++++|...+...+...|+|+..+.+ .+.++...++..+|.+.+++++.++|+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~------------~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLEL------------AGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 3466777999999999999999999999999999987654 6899999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+.++.++|.+|.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+-....+..+-..+...+..+..
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888777777666665554
Q ss_pred HH
Q 009096 392 AL 393 (543)
Q Consensus 392 ~l 393 (543)
..
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 44
No 190
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4e-11 Score=104.12 Aligned_cols=287 Identities=15% Similarity=0.098 Sum_probs=187.9
Q ss_pred cccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHH
Q 009096 26 RSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDC 105 (543)
Q Consensus 26 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 105 (543)
+......++..+....+.+|.+-..+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+...
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 33344456666777778889899999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 106 EEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
......+.-.......-+.+.+..+++..+....++.-...+ .....+.|-..++.|+++.|++-|+.+++
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~---------Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENE---------ADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCc---------cchhccchheeeccccHHHHHHHHHHHHh
Confidence 776543222234444556666777787777777766542222 22356667778888999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCC----CCCC----------------Ch---hHHHHHHHHHHHHHH
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKF----EHYS----------------PP---SQVKFLVWLLKLMFN 242 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~----------------~~---~~~~~~~~~~~a~~~ 242 (543)
...- .+.+-++++.++++.++++.|+++..++++. .|.. +. ......++..++-++
T Consensus 173 vsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 173 VSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 8543 3666777889999999999998877665443 3321 00 011123444557788
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW 322 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 322 (543)
++.++++.|.+.+...--....+.+... + .+++.. -..+++.+..+-+.-.+.++|--.+.+.++-.+|
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvT-L---------HN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVT-L---------HNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchh-h---------hHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 8888888887766544321111111110 0 111111 1223444445555555555554455555555555
Q ss_pred HHccCHHHHHH
Q 009096 323 SKMGLWENSIE 333 (543)
Q Consensus 323 ~~~g~~~~A~~ 333 (543)
.+..-|+-|..
T Consensus 321 CKNeyf~lAAD 331 (459)
T KOG4340|consen 321 CKNEYFDLAAD 331 (459)
T ss_pred hhhHHHhHHHH
Confidence 55554444443
No 191
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.33 E-value=7.7e-12 Score=102.39 Aligned_cols=86 Identities=10% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc------------HHHH-HHc---CCCcccEEEEEE
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES------------LAIA-KSE---GVRTVPTFKIYK 487 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~------------~~~~-~~~---~v~~~Pt~~~~~ 487 (543)
...+..++.||++||++|+...|.++++.+++ ++.++.|++|.. .... ..+ +|.++||++++.
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 34567799999999999999999999999998 466666666642 2333 345 899999988885
Q ss_pred -CCeE-EEEEcCC-CHHHHHHHHHhc
Q 009096 488 -NGEK-LKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 488 -~g~~-~~~~~g~-~~~~~~~~~~~~ 510 (543)
+|.. +.+..|. +.+++++.|++.
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 6654 5678898 999999998875
No 192
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.32 E-value=1e-11 Score=91.61 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=64.8
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLE 504 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 504 (543)
+.-+..|+++||++|....+.++++++.++++.+..+|+++.++++.+|||.++||+++ ||+.+.+ |. +.+++.
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~~ 87 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEIL 87 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHHh
Confidence 34566788899999999999999999999999999999999999999999999999964 8987774 76 666653
No 193
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.32 E-value=4.6e-11 Score=95.66 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 354 (543)
++.+|..+...|++++|++.|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 4568999999999999999999999999876 5789999999999999999999999999998885 678999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
++..+|++++|...++++++..|+++.+....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999999999999999999999998876543
No 194
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.7e-11 Score=97.46 Aligned_cols=119 Identities=36% Similarity=0.590 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
..+..++..|+-++..|+|++|..-|..|+.+.|.. ..+|.+.|.++.+++.++.|+..+.++|+++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 344556678999999999999999999999999875 457889999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
++|.+|.++.++++|+..|++.++++|...++...+.++--.+.
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999988887776554443
No 195
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.31 E-value=9.6e-12 Score=87.57 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=55.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+..|+++||++|+.+.|.++++++.++++.|..+|+++++++++++||.++||+++ +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 56899999999999999999999888889999999999999999999999999855 676543
No 196
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.31 E-value=2.7e-10 Score=103.34 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------cHHHHHHcCCCcccEEEEEEC-CeEEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------SLAIAKSEGVRTVPTFKIYKN-GEKLK 493 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~~~ 493 (543)
++++++.||++||++|+.+.|.|.+++++++ +.+..|++|. +..++++|||.++||+++++. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 5789999999999999999999999999985 6777777764 356899999999999999985 55554
Q ss_pred -EEcCC-CHHHHHHHHHhcCC
Q 009096 494 -EMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 494 -~~~g~-~~~~~~~~~~~~~~ 512 (543)
...|. +.++|.+.|.....
T Consensus 245 ~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 45587 99999999887654
No 197
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.31 E-value=4.6e-12 Score=127.67 Aligned_cols=101 Identities=12% Similarity=0.227 Sum_probs=84.5
Q ss_pred eEEeehhhhhhhcc----CCCCceeeeeeCCCCccccchhHhH---HHHHhhCCCeEEEEEeCcC----cHHHHHHcCCC
Q 009096 410 VEEISSLEKFKAAI----SSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYPYVHFFKVDVEE----SLAIAKSEGVR 478 (543)
Q Consensus 410 ~~~~~~~~~~~~~i----~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~~~~~~~d~~~----~~~~~~~~~v~ 478 (543)
...+.+.+++++.+ ..+++++|+||++||++|+.++|.+ +++.++++++.++++|+++ +.+++++|+|.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 34555666666655 3468999999999999999999875 6777888889999999985 36899999999
Q ss_pred cccEEEEEE-CCeEE--EEEcCC-CHHHHHHHHHhc
Q 009096 479 TVPTFKIYK-NGEKL--KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 479 ~~Pt~~~~~-~g~~~--~~~~g~-~~~~~~~~~~~~ 510 (543)
++||+++|+ ||+++ .++.|. +++++.+++++.
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999996 89884 688998 999999999874
No 198
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=5.1e-11 Score=113.69 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=104.8
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHH
Q 009096 236 LLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILY 315 (543)
Q Consensus 236 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 315 (543)
...|..++..|++++|+..|+++++++|++..++ ..+|.++...|++++|+..+++++.++|+++.++
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~------------~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELY------------ADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 3448889999999999999999999999998875 3479999999999999999999999999999999
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+.+|.++..+|++++|+..|++++.++|+++.+...++.|..++.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876663
No 199
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.30 E-value=1.1e-10 Score=107.25 Aligned_cols=240 Identities=18% Similarity=0.100 Sum_probs=161.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhh
Q 009096 90 ATLTALGRLTEAVSDCEEAVRLDPG-YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESR 168 (543)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (543)
+-++..|+|..++..++ ....+|. .......+.+++..+|+++..+.-....-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~------------------------- 62 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS------------------------- 62 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-------------------------
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-------------------------
Confidence 44566777877776666 2223332 34455667777777777776665443221
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcCh
Q 009096 169 KIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRF 248 (543)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 248 (543)
.| ...+...++..+...++-+.++..++..+........... .+..|.++...|++
T Consensus 63 ------------------~~--~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~----~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 63 ------------------SP--ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIV----QLLAATILFHEGDY 118 (290)
T ss_dssp ------------------SC--CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH----HHHHHHHHCCCCHH
T ss_pred ------------------Ch--hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHH----HHHHHHHHHHcCCH
Confidence 01 1222333344444434556677777666554333222221 22337889999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHcc--
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG-- 326 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 326 (543)
++|++.+.+. ++.+...+ .-.++...++++.|.+.++.+-+.+.+..-+....+++....|
T Consensus 119 ~~AL~~l~~~-----~~lE~~al------------~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 119 EEALKLLHKG-----GSLELLAL------------AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHCCCTTT-----TCHHHHHH------------HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcc-----CcccHHHH------------HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence 9999988764 44444322 4678999999999999999999988877766666677776666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 327 LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 327 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
.+.+|...|++..+..+.++..+..+|.+++.+|+|++|.+.++++++.+|+++++..++..+...+++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 5999999999988888889999999999999999999999999999999999999998887777666554
No 200
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=2.7e-09 Score=116.97 Aligned_cols=316 Identities=16% Similarity=-0.027 Sum_probs=219.7
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH-hcCCCChhHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV-RLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~ 127 (543)
..+...+..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+- .....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 44556667788899999998866654211 1123445556777788898888777665431 111234455677888899
Q ss_pred HhCCHHHHHHHhcCCCC---CCC-hHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHH
Q 009096 128 RLGQVENARHHLCFPGH---HPD-PNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP----QLVACKA 199 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~a 199 (543)
..|++++|...+..+.. ..+ ..... .........+..+...|++++|...+++++...+.... .....+|
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGT--LQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchh--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 99999999998877644 111 00000 11222334677788899999999999999986554322 3456688
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc-----HHHHHHHHh
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN-----VEIASVLTN 274 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~ 274 (543)
.++...|++++|...+.+++...............+..+|.++...|++++|...+++++...... ......
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--- 575 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL--- 575 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH---
Confidence 899999999999999999987655544444444456677999999999999999999998653221 111100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---H
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---T 346 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 346 (543)
+..+|.++...|++++|...+.+++.... .....+..+|.++...|++++|...+.++..+.+.. .
T Consensus 576 ------~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 576 ------LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred ------HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 12368888999999999999999877532 124566678999999999999999988886542110 0
Q ss_pred ------------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 347 ------------------------------------------KALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 347 ------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+..+|.++...|++++|...+++++...
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 013467888889999999999999998864
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=1.3e-11 Score=87.67 Aligned_cols=67 Identities=27% Similarity=0.414 Sum_probs=61.5
Q ss_pred ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q 009096 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG-RWSEAVRDYEALRRELP 377 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 377 (543)
++.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57789999999999999999999999999999999999999999999999 79999999999999987
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.29 E-value=1.8e-09 Score=96.79 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=71.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhh---HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAY---RSNRAATLTALGRLTEAVSDCEEAVRLDPGYN---RAH 119 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (543)
.+++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+|++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 478889999999999999999999999999999988644 48999999999999999999999999999875 456
Q ss_pred HHHHHHHHH
Q 009096 120 QRLASLYFR 128 (543)
Q Consensus 120 ~~la~~~~~ 128 (543)
+.+|.++..
T Consensus 110 Y~~g~~~~~ 118 (243)
T PRK10866 110 YMRGLTNMA 118 (243)
T ss_pred HHHHHhhhh
Confidence 666665444
No 203
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=4.4e-10 Score=104.86 Aligned_cols=156 Identities=15% Similarity=0.047 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
....++..+..++..|++++|+..++..++..|+|+..+... +.++...++..+|.+.+++++.++|+....+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~------~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~- 377 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELA------GDILLEANKAKEAIERLKKALALDPNSPLLQ- 377 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhcCCCccHHH-
Confidence 367788899999999999999999999999999997654444 9999999999999999999999999997665
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
.++|+++.+.|++.+|+..+++.+..+|+++..|..||..|..+|+..+|. .
T Consensus 378 -----------~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~ 429 (484)
T COG4783 378 -----------LNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------L 429 (484)
T ss_pred -----------HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------H
Confidence 347999999999999999999999999999999999999999999766554 4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-CCChH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRREL-PGDNE 381 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 381 (543)
..+..+...|++++|+..+..+.+.. .+.+.
T Consensus 430 A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 430 ARAEGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 56677778899999999999999887 44444
No 204
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=3.7e-08 Score=94.77 Aligned_cols=335 Identities=16% Similarity=0.080 Sum_probs=243.7
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHh-cCCcc-----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAIS-MSPEN-----AAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
..+..+|.+.+.|.....+ ..|+..+-+..|.+|++ .+|.- ...|..+|..|...|+.+.|...|+++++..
T Consensus 340 VlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 4567899999999987665 57899999999999986 46654 4789999999999999999999999999875
Q ss_pred C----CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHH-----------HhHHHHHHHHHHHHHhhhhcCCHHHHH
Q 009096 113 P----GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNE-----------LLKLQSFEKHLNRCAESRKIGDWKTVL 177 (543)
Q Consensus 113 p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (543)
= +....|..-|..-.+..+++.|+...+++..-|.+.. ......+..|...+......|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 2 2367899999999999999999999999987333211 122234556677778888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 178 RETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 178 ~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
..|++++.+.--. |.+..+.|..+....-+++|.+.|++.+.+.+-.... .....++.....-+.-...+.|..+|++
T Consensus 498 ~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~-diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY-DIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999986544 7888888999999999999999999999988654221 1112233333344555678999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-ChhHHhHH--HHHHHHccCHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-NSILYCNR--AICWSKMGLWENSIED 334 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l--a~~~~~~g~~~~A~~~ 334 (543)
|++..|.. .+..++ ...+..-.+-|--..|++.|++|...-+. +-...+++ ..+-...| ...-...
T Consensus 576 aL~~Cpp~-~aKtiy---------LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~i 644 (835)
T KOG2047|consen 576 ALDGCPPE-HAKTIY---------LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREI 644 (835)
T ss_pred HHhcCCHH-HHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHH
Confidence 99988832 221111 12355556668889999999998765432 21111211 11111112 3445678
Q ss_pred HHHHHhhCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--ChHHHHHHHH
Q 009096 335 CNVALRIQPNYT--KALLRRAVSNEKLGRWSEAVRDYEALRRELPG--DNEVAESLHN 388 (543)
Q Consensus 335 ~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 388 (543)
|++||+.-|+.. +.-...|..-.++|..+.|...|.-+-++.+- +.+.|+....
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 899998888754 44567788889999999999999998887543 4555554443
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=1.4e-11 Score=87.46 Aligned_cols=68 Identities=34% Similarity=0.573 Sum_probs=65.6
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDP 113 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 113 (543)
+++..|+.+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 368899999999999999999999999999999999999999999999999 79999999999999988
No 206
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.28 E-value=5.8e-11 Score=96.04 Aligned_cols=95 Identities=22% Similarity=0.396 Sum_probs=88.7
Q ss_pred ccCCCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
-.-.|....+.+...|-+.......+++.||-+....|+.|...|+.|+.++.+.+|++||.+..+.++.+++|..+||+
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred HcCCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeE
Confidence 34457788888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCC
Q 009096 484 KIYKNGEKLKEMINP 498 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~ 498 (543)
.+|+||+.+++++|+
T Consensus 142 ~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVGF 156 (211)
T ss_pred EEEEcCEEEEEEeeH
Confidence 999999999999995
No 207
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.28 E-value=1.5e-11 Score=119.72 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=74.1
Q ss_pred cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEE----------------------------eCcCcHHHH
Q 009096 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKV----------------------------DVEESLAIA 472 (543)
Q Consensus 423 i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~----------------------------d~~~~~~~~ 472 (543)
+..+++++|+||++||++|+.+.|.|.++.++++ ++.|+.| ++|....++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 3467899999999999999999999999999885 4655444 345567899
Q ss_pred HHcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 473 KSEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
+.|+|.++||++++ ++|+++.++.|. +.++|+++|+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999999998665 699999999998 9999999999
No 208
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.28 E-value=7.1e-12 Score=98.92 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=66.1
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHH---HHhhCC-CeEEEEEeCcCc--------------------HHHHHHcCCCc
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNL---LCVRYP-YVHFFKVDVEES--------------------LAIAKSEGVRT 479 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~---l~~~~~-~~~~~~~d~~~~--------------------~~~~~~~~v~~ 479 (543)
..++++++.|+.+||+.|+.+.+.+.. +...+. ++.++.++++.. .++++.|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 357899999999999999999998875 444443 588888888753 35999999999
Q ss_pred ccEEEEEE-CCeEEEEEcCC-CHHHHHHHH
Q 009096 480 VPTFKIYK-NGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 480 ~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~ 507 (543)
+||++++. +|+++.++.|+ ++++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999996 89999999999 999998875
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=99.28 E-value=1.2e-10 Score=93.74 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
.+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.|+..+|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
+.+.|..+|+.+++ .|.+..+...-......+++
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 99999999999999 57777776544444444433
No 210
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.27 E-value=5.4e-12 Score=111.47 Aligned_cols=248 Identities=17% Similarity=0.116 Sum_probs=178.5
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG 130 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (543)
+...|+.|+++|.|++||.||.+++..+|.|+..+.++|.+|+++..+..|...+..|+.++..+..+|.+.+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999998888888888888888887
Q ss_pred CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 131 QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 131 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
...+|.+.++.++. +.|.. .++ -..+.......+
T Consensus 180 ~~~EAKkD~E~vL~-----------------------------------------LEP~~-~EL----kK~~a~i~Sl~E 213 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA-----------------------------------------LEPKN-IEL----KKSLARINSLRE 213 (536)
T ss_pred hHHHHHHhHHHHHh-----------------------------------------hCccc-HHH----HHHHHHhcchHh
Confidence 77777776655543 33332 111 111111111111
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh
Q 009096 211 ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS 290 (543)
Q Consensus 211 A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~ 290 (543)
+.- +.+..|. +-+|..--.+++. ....|..+..
T Consensus 214 ~~I----~~KsT~G-----------------------~~~A~Q~~~Q~l~--------------------~K~~G~~Fsk 246 (536)
T KOG4648|consen 214 RKI----ATKSTPG-----------------------FTPARQGMIQILP--------------------IKKPGYKFSK 246 (536)
T ss_pred hhH----HhhcCCC-----------------------CCccccchhhhcc--------------------ccCcchhhhh
Confidence 100 0000111 1111111111211 1224677888
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
.|.++.++.+|.+-+....++..+..+ +..|.+.-+++.|+..+.+++..+|....+....+.+---+|...++...++
T Consensus 247 ~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~ 325 (536)
T KOG4648|consen 247 KAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQ 325 (536)
T ss_pred hhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchh
Confidence 889999999998888777777666666 8888899999999999999999988877777777777777888999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHH
Q 009096 371 ALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 371 ~al~~~p~~~~~~~~l~~~~~~ 392 (543)
.++.+.|.+......+.+....
T Consensus 326 T~~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 326 TAVKVAPAVETPKETETRKDTK 347 (536)
T ss_pred heeeeccccccchhhhhhhccc
Confidence 9999999998887766654433
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.25 E-value=2e-09 Score=94.41 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=64.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN---RAH 119 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (543)
.+++.++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 367889999999999999999999999999988765 57889999999999999999999999999998875 355
Q ss_pred HHHHHHHHH
Q 009096 120 QRLASLYFR 128 (543)
Q Consensus 120 ~~la~~~~~ 128 (543)
+.+|.+++.
T Consensus 83 Y~~g~~~~~ 91 (203)
T PF13525_consen 83 YMLGLSYYK 91 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556655444
No 212
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.24 E-value=3.4e-11 Score=103.72 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=71.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-----------------------HHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-----------------------AIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-----------------------~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+...|.+.++.++ ++.++.|+.++.. .++..|||.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 578999999999999999999999998753 6778888765432 355689999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+++++ ++|+++.+..|. +.+++++.|+..+.
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 76666 599999999998 99999999987653
No 213
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-11 Score=117.18 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=80.0
Q ss_pred eEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+.. +.|++ +....+.++|.||+|||+||+.+.|.+++|++.|. ++.++++|.+.|.-- ..+|.++|||++
T Consensus 368 VkvvVg-knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~--~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 368 VKVVVG-KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP--SLKVDGFPTILF 444 (493)
T ss_pred eEEEee-cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc--cccccccceEEE
Confidence 334444 44555 45678999999999999999999999999999884 499999999988643 556778999999
Q ss_pred EECCeE--EEEEcCC-CHHHHHHHHHhcCC
Q 009096 486 YKNGEK--LKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g~~--~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|+.|.. +-.+.|. +.+++..+|++.-.
T Consensus 445 ~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 445 FPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 997753 4445676 99999999988765
No 214
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.23 E-value=1.7e-11 Score=96.31 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=66.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHh-H--HHHHhhC-CCeEEEEEeCcCcHHHHHH--------cCCCcccEEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPF-V--NLLCVRY-PYVHFFKVDVEESLAIAKS--------EGVRTVPTFK 484 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~-l--~~l~~~~-~~~~~~~~d~~~~~~~~~~--------~~v~~~Pt~~ 484 (543)
+.+..+.+.+++++++|+++||++|+.|.+. + .++.+.+ .++.++++|.++.+++++. ||+.++||++
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4456677789999999999999999999873 2 3555554 5799999999998877653 5899999999
Q ss_pred EEE-CCeEEEEEcCC
Q 009096 485 IYK-NGEKLKEMINP 498 (543)
Q Consensus 485 ~~~-~g~~~~~~~g~ 498 (543)
++. +|+++...++.
T Consensus 86 fl~~~G~~~~~~~~~ 100 (124)
T cd02955 86 FLTPDLKPFFGGTYF 100 (124)
T ss_pred EECCCCCEEeeeeec
Confidence 995 89999877665
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.6e-10 Score=97.89 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL 327 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 327 (543)
.+.-+.-++.-+..+|++.+-|.+ +|.+|+..|++..|...|.+++++.|++++.+..+|.++....+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~------------Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDL------------LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHH------------HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 445566778889999999999865 69999999999999999999999999999999999999887643
Q ss_pred ---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 328 ---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 328 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
..++...+++++..+|.++.+.+.+|..++..|+|.+|...+++.++..|.+..-...+.+....
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999887766555544433
No 216
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=1.7e-10 Score=98.63 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=105.4
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
..+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++..++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 456778899999999999999999999999999887653 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
..+|.++...|+...+...+.+++ ..+++|+..+++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~---------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAE---------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHH---------------------------HHHHHHHHHHHHHHhhCchh
Confidence 999999999999887766553332 24678888999999988876
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.21 E-value=6.8e-10 Score=97.33 Aligned_cols=167 Identities=18% Similarity=0.103 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|+..+..++..|..++..|++.+|+..|++++...|..+... .+.+.+|.+++..|++++|+..+++.++..|+++.
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~---~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP---QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 344466677777777888888888888888877777765433 23445588888888888888888888888888775
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHhccCCCChh-----------------HHhHHH
Q 009096 268 IASVLTNVKMVVRARTRGNNLF-----------SSRRYSEACSAYGEGLKYDSYNSI-----------------LYCNRA 319 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~-----------~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la 319 (543)
+-..+ +.+|.+++ ..+...+|+..|+..+...|++.. --+..|
T Consensus 78 ~~~A~---------Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 78 ADYAL---------YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHH---------HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333 22444433 334456899999999999998732 224467
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHH
Q 009096 320 ICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 366 (543)
..|.+.|.|..|+..++.+++..|+.+ +++..++.++.++|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888999999999999999888865 67888888899988887544
No 218
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.21 E-value=2e-09 Score=96.56 Aligned_cols=171 Identities=17% Similarity=0.107 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 189 DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
+..+..++..|..+...|++++|+..|++++...|..+... .+.+.+|.++++.+++++|+..+++.++.+|+++.+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~---~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ---QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 34566777889999999999999999999999999874432 234556999999999999999999999999999877
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcC------------------CHHHHHHHHHHHhccCCCCh-----------------h
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSR------------------RYSEACSAYGEGLKYDSYNS-----------------I 313 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~------------------~~~~A~~~~~~al~~~p~~~-----------------~ 313 (543)
-..+ +.+|.++...+ ...+|+..|++.++..|++. .
T Consensus 106 ~~a~---------Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 106 DYVL---------YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHH---------HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 5444 33565543332 13578899999999999872 2
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
--+..|..|.+.|.|..|+.-++.+++..|+. .++++.++.+|..+|..++|......
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 23446788999999999999999999998875 48899999999999999999887654
No 219
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=2.4e-10 Score=87.41 Aligned_cols=98 Identities=31% Similarity=0.459 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 009096 361 RWSEAVRDYEALRRELPG 378 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~ 378 (543)
++++|...+.++++..|+
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999998874
No 220
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.21 E-value=7.4e-10 Score=102.65 Aligned_cols=165 Identities=20% Similarity=0.181 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHH
Q 009096 172 DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFEN 250 (543)
Q Consensus 172 ~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~ 250 (543)
++++|+.++++++ .+|...|++..|-..+.++ |.+|... |++++
T Consensus 89 ~~~~Ai~~~~~A~---------------~~y~~~G~~~~aA~~~~~l--------------------A~~ye~~~~d~e~ 133 (282)
T PF14938_consen 89 DPDEAIECYEKAI---------------EIYREAGRFSQAAKCLKEL--------------------AEIYEEQLGDYEK 133 (282)
T ss_dssp THHHHHHHHHHHH---------------HHHHHCT-HHHHHHHHHHH--------------------HHHHCCTT--HHH
T ss_pred CHHHHHHHHHHHH---------------HHHHhcCcHHHHHHHHHHH--------------------HHHHHHHcCCHHH
Confidence 6666666666554 3456677777776655443 8888888 89999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------hhHHhHHHHHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------SILYCNRAICWS 323 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~ 323 (543)
|+++|++++........... ....+...|.++...|+|++|++.|+++....-++ ...++..+.|++
T Consensus 134 Ai~~Y~~A~~~y~~e~~~~~------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 134 AIEYYQKAAELYEQEGSPHS------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhh------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 99999999866432221111 11123468999999999999999999988753222 245677889999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHH--ccCHHHHHHHHHHHHhcCC
Q 009096 324 KMGLWENSIEDCNVALRIQPNYT-----KALLRRAVSNEK--LGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 377 (543)
..||+..|...+++....+|... .....+-.++.. ...+.+|+..|++..+++|
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 99999999999999999998653 333444444432 3468888888887766654
No 221
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.20 E-value=1.1e-10 Score=103.33 Aligned_cols=114 Identities=29% Similarity=0.432 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
...+.+.|+.|+++|+|++|+.+|.+++..+|.++..+.+++.+|++++.+..|...+..++.++.....+|-++|.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.+|+..+|.+.++.++++.|++.++...+..+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999998887766655443
No 222
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.20 E-value=5.8e-11 Score=101.19 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-----------------------cCcHHHHHHcCCCcc
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-----------------------EESLAIAKSEGVRTV 480 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-----------------------~~~~~~~~~~~v~~~ 480 (543)
..+++++++||++||++|+.+.|.++++.++ ++.++.|+. |....+++.|+|.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3578999999999999999999999998764 355555553 334467889999999
Q ss_pred cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 481 PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|+++++ +||+++.+..|. +.+++.++|++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 965555 699999999998 9999999998765
No 223
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.9e-08 Score=85.43 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
.+...-+.++...+++++|++....... +.+....-+++.++.+++-|...++++.+++.+..-.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt---- 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN-----------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT---- 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH----
Confidence 4555668899999999999999887432 2233333678999999999999999999887765433
Q ss_pred HhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 009096 273 TNVKMVVRARTRGNNLF----SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 348 (543)
++|.++. ..+++.+|.-+|++.-+..|..+......+.|...+|+|++|...++.++..++++++.
T Consensus 174 ----------QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 174 ----------QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred ----------HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 2344443 34569999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHH-HHHHHHHhcCCCChHHH
Q 009096 349 LLRRAVSNEKLGRWSEAV-RDYEALRRELPGDNEVA 383 (543)
Q Consensus 349 ~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~ 383 (543)
+.++-.+-...|.-.++. +.+.+....+|+++-+.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999876655 56677777888887765
No 224
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.19 E-value=6.1e-11 Score=95.84 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=63.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEe-----------------------CcCcHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD-----------------------VEESLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d-----------------------~~~~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+...|.++++.+++ ++.++.|+ +|....++..|+|.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 3678999999999999999999999998886 36665555 34556788999999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHH
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~ 503 (543)
+.+++ ++|+++.++.|. +.+.+
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccCChHhc
Confidence 65555 699999999998 76654
No 225
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.18 E-value=5e-11 Score=88.20 Aligned_cols=82 Identities=28% Similarity=0.390 Sum_probs=74.0
Q ss_pred hcCCHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSY--NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 367 (543)
..|+|++|+..|+++++..|. +...++.+|.|+++.|+|++|+..+++ ...+|.+...++.+|.|+.++|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567888899999999999999999999 88899999999999999999999999999
Q ss_pred HHHHH
Q 009096 368 DYEAL 372 (543)
Q Consensus 368 ~~~~a 372 (543)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 226
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=1.2e-09 Score=93.05 Aligned_cols=113 Identities=21% Similarity=0.206 Sum_probs=95.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
.+..++.+|..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.+...+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 47788999999999999999999999999887653 468999999999999999999999999999999999999999
Q ss_pred HHHH-------HhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009096 124 SLYF-------RLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQ 193 (543)
Q Consensus 124 ~~~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 193 (543)
.++. .+|++++|+.. +++|+..+++++..+|+....
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~----------------------------------~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAW----------------------------------FDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHH----------------------------------HHHHHHHHHHHHHhCcccHHH
Confidence 9998 44455554443 456777888899888876433
No 227
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.17 E-value=8.9e-11 Score=118.36 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=84.3
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+..+.. ..|.+. ...++.++|.||++||++|+.+.|.++++++.+. ++.|+++|++.+. +.. ++|.++||++
T Consensus 348 v~~l~~-~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~ 424 (462)
T TIGR01130 348 VKVLVG-KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIK 424 (462)
T ss_pred cEEeeC-cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEE
Confidence 333443 455554 4568899999999999999999999999999885 3889999999875 444 9999999999
Q ss_pred EEECCeEE--EEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 485 IYKNGEKL--KEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 485 ~~~~g~~~--~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
+|++|... .++.|. +.+.+.++|++..+...+
T Consensus 425 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 425 FVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred EEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 99988653 567787 999999999998866544
No 228
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.17 E-value=1.2e-10 Score=81.49 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 317 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666677777777777777777777777777777777777777777777777777766654
No 229
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.16 E-value=1.5e-09 Score=92.72 Aligned_cols=99 Identities=25% Similarity=0.334 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++..+|++++|+..+++++...|++..++..+|.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3568999999999999999999999887654 4689999999999999999999999999999999999999999999
Q ss_pred HccC--------------HHHHHHHHHHHHhcCCCC
Q 009096 358 KLGR--------------WSEAVRDYEALRRELPGD 379 (543)
Q Consensus 358 ~~g~--------------~~~A~~~~~~al~~~p~~ 379 (543)
..|+ +++|++++++++..+|++
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9887 678888888888888887
No 230
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=1.5e-10 Score=80.89 Aligned_cols=65 Identities=26% Similarity=0.440 Sum_probs=60.6
Q ss_pred HHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 231
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.15 E-value=1.3e-10 Score=93.75 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=58.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC---------CCeEEEEEeCcCc-------------------------HH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY---------PYVHFFKVDVEES-------------------------LA 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~---------~~~~~~~~d~~~~-------------------------~~ 470 (543)
.++++++.|||+||++|+...|.|.++.+++ .++.++.|+.|+. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999877643 2478888887642 25
Q ss_pred HHHHcCCCcccEEEEEE-CCeEEEE
Q 009096 471 IAKSEGVRTVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 471 ~~~~~~v~~~Pt~~~~~-~g~~~~~ 494 (543)
++..|+|.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 78899999999999886 9998876
No 232
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=1.2e-09 Score=93.14 Aligned_cols=125 Identities=19% Similarity=0.148 Sum_probs=100.4
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICW 322 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 322 (543)
+.+..+...+.+.++..+.+..+.. +..+|.++...|++++|+..|++++.+.|+. +.++.++|.++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~----------~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~ 82 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFT----------YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 3455666666655555555544332 3457999999999999999999999887663 46899999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HccCHH-------HHHHHHHHHHhcCCCCh
Q 009096 323 SKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE-------KLGRWS-------EAVRDYEALRRELPGDN 380 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 380 (543)
...|++++|+..|++++.++|.+...+.++|.++. .+|+++ +|+..|++++..+|++.
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999999999998 777766 66666677788888654
No 233
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.14 E-value=5.7e-11 Score=87.90 Aligned_cols=81 Identities=32% Similarity=0.490 Sum_probs=72.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHH
Q 009096 60 RKGNFVEALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARH 137 (543)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (543)
.+|+|++|+..|+++++.+|. +...++.+|.||+..|+|++|+..+++ .+.+|.+...++.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567788899999999999999999999 88889898999999999999999999999
Q ss_pred HhcC
Q 009096 138 HLCF 141 (543)
Q Consensus 138 ~~~~ 141 (543)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9864
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=99.13 E-value=5.5e-10 Score=90.04 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=100.4
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
....+..-+..+..|..+++.|++++|...|+-....+|.++..+..||.|+..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPD 147 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~ 147 (543)
..|.|+..+|+.+.|+.+|..++..+.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNERTE 136 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhCcc
Confidence 999999999999999999998887433
No 235
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=9.1e-08 Score=92.15 Aligned_cols=203 Identities=14% Similarity=0.075 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHc-CC----CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 171 GDWKTVLRETDAAIAI-GV----DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~-~p----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
|+..+-+..|..++.. +| .....+|...|..|...|+.+.|...|+++.+..-...+. ....|..-|..-...
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d--La~vw~~waemElrh 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED--LAEVWCAWAEMELRH 438 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH--HHHHHHHHHHHHHhh
Confidence 4455555555555542 22 2344556666666666666666666666666554333222 223455556666666
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHh--------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTN--------VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
.+++.|+.+.+.+... |..+.. ..+.+ .+...-|...+......|-++.....|++.+.+.--.|..-.|
T Consensus 439 ~~~~~Al~lm~~A~~v-P~~~~~-~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHV-PTNPEL-EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hhHHHHHHHHHhhhcC-CCchhh-hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 6666666666666543 333321 11111 1112223334555555667777777777777777667777888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHH---HHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQ--PNYTKALLRR---AVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
.|..+....-+++|.+.|++.+.+. |.-.+.|... ...-+.--+.+.|...|++|++..|
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888875 3444555432 2222233478999999999999888
No 236
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.13 E-value=1.1e-09 Score=101.40 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=116.7
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
|.+|...+++++|...|.++................+...+.++... ++++|+.+|++++.+.-...... ..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~------~aA 114 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS------QAA 114 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH------HHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH------HHH
Confidence 44555555555555555555443322222222233333335665555 88899999998886532222111 112
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q 009096 279 VRARTRGNNLFSS-RRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------ 345 (543)
Q Consensus 279 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 345 (543)
..+..+|.+|... |++++|+++|++|++..... ...+..+|.++..+|+|++|++.|+++....-++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 2345689999998 99999999999999874221 4677889999999999999999999998753221
Q ss_pred H-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 346 T-KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 346 ~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
. ..++..+.|++..||...|...+++....+|.-...
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 1 456778889999999999999999999999865443
No 237
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.13 E-value=5.7e-10 Score=89.29 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY---NRAHQR 121 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (543)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5688999999999999999999999999999876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCC
Q 009096 122 LASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+|.++..+|++++|+..+.+++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 99999999999999999998887
No 238
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.13 E-value=1.8e-09 Score=97.32 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=94.2
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q 009096 283 TRGNNL-FSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAVS 355 (543)
Q Consensus 283 ~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 355 (543)
..|..+ ...|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++.+|.+
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 356555 56799999999999999999998 5799999999999999999999999999988874 6899999999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
+..+|++++|...|+++++..|+...+.....
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 99999999999999999999999987664443
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3e-09 Score=97.55 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=110.0
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCC----CcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDY----SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
|..+++.|+|..|...|++++..-+ .+.+-..... -.....+.+++.++.++++|.+|+....++|.++|++..+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~-~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAE-ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHH-HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 7888888888888888888774322 1111111010 1123345789999999999999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHhcCC
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA-VRDYEALRRELP 377 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 377 (543)
++..|.++..+|+|+.|+..|+++++++|+|..+...+..+..+..++.+. .+.|.+.+...+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999998887776655 666666665544
No 240
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.11 E-value=4.1e-10 Score=93.58 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=68.3
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-------------HHHHHHcCC--CcccEEEEE-ECCeEE-
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-------------LAIAKSEGV--RTVPTFKIY-KNGEKL- 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 492 (543)
++.||++||++|+...|.+.++.+++ ++.++.|++|.. ..+...||+ .++||.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999998 467766766532 347778995 699998888 599886
Q ss_pred EEEcCC-CHHHHHHHHHhcCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..+.|. +.+++++.|++.+..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 578898 999999999987644
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.11 E-value=2.6e-09 Score=95.48 Aligned_cols=288 Identities=15% Similarity=0.053 Sum_probs=200.4
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC----CC--ChhH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLD----PG--YNRA 118 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~ 118 (543)
+......|..+++..++++|+....+.+..-.+. ...+-.+..++..+|.|++++..--..+... .. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999999999999888754332 2344556677888888888776654443322 11 1355
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-DSSPQLVAC 197 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~ 197 (543)
+.+++..+.+..++.+++.+-+..+..|... | .........
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~--------------------------------------~~~~~gq~~l~ 127 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTR--------------------------------------AGQLGGQVSLS 127 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC--------------------------------------cccccchhhhh
Confidence 6666666666666666666544333211111 1 112344556
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH-HHHHHHHhHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV-EIASVLTNVK 276 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~ 276 (543)
++.++..++.++++++.|+.+++....+.+....+.....+|..+-.+.++++|+-+..++.++..... .-| ....
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~---~~ky 204 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW---SLKY 204 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch---hHHH
Confidence 788888889999999999999888777777777777778889999999999999999998886643221 111 1112
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYD------SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN------ 344 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 344 (543)
....++.++.++..+|+.-.|.++.+++.++. +..+.....+|.+|...|+.+.|..-|+.+......
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg 284 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG 284 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence 23345778999999999999999999998763 334567778999999999999999999999875322
Q ss_pred CHHHHHHHHHHHHHccCHHH-----HHHHHHHHHhcC
Q 009096 345 YTKALLRRAVSNEKLGRWSE-----AVRDYEALRREL 376 (543)
Q Consensus 345 ~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~ 376 (543)
...++...|.++....-..+ |++.-++++++.
T Consensus 285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 24666777777766554444 777777777764
No 242
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.09 E-value=6.6e-09 Score=85.91 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=101.8
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCN 317 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 317 (543)
.....++...+...+++.+...|+.+..... .+.+|.+++..|++++|+..|+.++...|+. ..+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A---------~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSPYAALA---------ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHH---------HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3446788888888899999999998544322 2457999999999999999999999987665 467888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
+|.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999999976 33344556788899999999999999999999875
No 243
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.09 E-value=6.8e-09 Score=85.82 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=81.5
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY---NRAHQR 121 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (543)
+...+..+......++...+...+++.++.+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4456666777778999999999999999999988 5778889999999999999999999999987664 467888
Q ss_pred HHHHHHHhCCHHHHHHHhcCC
Q 009096 122 LASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a 142 (543)
+|.++...|++++|+..++..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 999999999999999988653
No 244
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.06 E-value=6.5e-09 Score=103.34 Aligned_cols=135 Identities=10% Similarity=-0.012 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhc---ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHH
Q 009096 235 WLLKLMFNISEL---RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS--------SRRYSEACSAYGE 303 (543)
Q Consensus 235 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~--------~~~~~~A~~~~~~ 303 (543)
++.+|.-+...+ +...|+.+|+++++++|++..++..+ +.++.. ..+...+.+...+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~l------------a~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEK------------ALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344466665544 47899999999999999998886543 222211 1235667777777
Q ss_pred Hhcc--CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 304 GLKY--DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 304 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++.+ +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 6664 777788999999999999999999999999999999 5889999999999999999999999999999999986
Q ss_pred H
Q 009096 382 V 382 (543)
Q Consensus 382 ~ 382 (543)
.
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 245
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=1.1e-09 Score=83.75 Aligned_cols=95 Identities=35% Similarity=0.518 Sum_probs=90.3
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCC
Q 009096 130 GQVENARHHLCFPGH 144 (543)
Q Consensus 130 g~~~~A~~~~~~a~~ 144 (543)
|++++|...+.++++
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999999877654
No 246
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.06 E-value=4.2e-10 Score=91.43 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCc------------------------HHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEES------------------------LAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~------------------------~~~~~~~~ 476 (543)
.+++++|.||++||++|+...|.+.++.+++. ++.++.+++|.. ..+++.||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 46789999999999999999999998877662 577777777643 35788999
Q ss_pred CCcccEEEEEE-CCeEEEE
Q 009096 477 VRTVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 477 v~~~Pt~~~~~-~g~~~~~ 494 (543)
|.++||++++. +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999996 9988765
No 247
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.06 E-value=4.4e-10 Score=91.28 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=58.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCc-------------------------HHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEES-------------------------LAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~-------------------------~~~~~~~ 475 (543)
.++++++.||++||++|+...|.+.++.+++. ++.++.|+++.. ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 36899999999999999999999998887663 477877877653 2567789
Q ss_pred CCCcccEEEEEE-CCeEEEEE
Q 009096 476 GVRTVPTFKIYK-NGEKLKEM 495 (543)
Q Consensus 476 ~v~~~Pt~~~~~-~g~~~~~~ 495 (543)
+|.++||++++. +|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999986 88877653
No 248
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.04 E-value=9.7e-10 Score=88.35 Aligned_cols=82 Identities=27% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEE--------------------EeCcCcHHHHHHcCCCcccEEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFK--------------------VDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~--------------------~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
.++++++.||++||++|+.+.|.+.++.+++.-+.+.. +-.+.+..++++|+|.++||++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 45789999999999999999999999887743221111 1123456799999999999999
Q ss_pred EEECCeEEEEEcCC-CHHHHHHH
Q 009096 485 IYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 485 ~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
++++|.++.+..|. ++++|++.
T Consensus 99 vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 99 IVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEcCCCeEEEEeccCCHHHHHhh
Confidence 99755588899998 99888764
No 249
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-08 Score=90.15 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCC
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (543)
+.+.-+.-++.-+..+|+|++-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~----------- 205 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG----------- 205 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----------
Confidence 356667778888889999999999999999999999999999999999999999999999988776533
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC
Q 009096 143 GHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE 222 (543)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 222 (543)
..+-.++...+++++..+|.+ ....+.+|..++..|+|.+|...++..++..
T Consensus 206 ---------------------------~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 206 ---------------------------QQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ---------------------------CcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 223345667778888888887 6777888899999999999999999988888
Q ss_pred CCCChhHH
Q 009096 223 HYSPPSQV 230 (543)
Q Consensus 223 ~~~~~~~~ 230 (543)
|.+.....
T Consensus 258 p~~~~rr~ 265 (287)
T COG4235 258 PADDPRRS 265 (287)
T ss_pred CCCCchHH
Confidence 87755433
No 250
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6e-10 Score=108.00 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=86.8
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
....+.......+++++.||++||++|+.+.|.+.+++..+.+ +.+..||++.+..++.+|+|.++||+.+|..|....
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 4455555667789999999999999999999999999999987 999999999999999999999999999999995555
Q ss_pred EEcCC-CHHHHHHHHHhcCCCC
Q 009096 494 EMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+.|. +.+.+.+++.+...++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPS 137 (383)
T ss_pred eccCcccHHHHHHHHHHhhccc
Confidence 56666 8899999988776554
No 251
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.03 E-value=8.3e-10 Score=84.05 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=55.0
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc-------------------------HHHHHHcCC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES-------------------------LAIAKSEGV 477 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~-------------------------~~~~~~~~v 477 (543)
+++++++||++||++|+...|.+.++.++++ ++.|+.|.+|+. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4689999999999999999999999999998 599998888753 358899999
Q ss_pred CcccEEEEEE-CCeE
Q 009096 478 RTVPTFKIYK-NGEK 491 (543)
Q Consensus 478 ~~~Pt~~~~~-~g~~ 491 (543)
.++|+++++. +|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 9999998886 7764
No 252
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.02 E-value=1.4e-09 Score=93.29 Aligned_cols=86 Identities=22% Similarity=0.360 Sum_probs=74.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC----------------------cHHHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE----------------------SLAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~----------------------~~~~~~~~~v~~~ 480 (543)
.++++++.||++||+.|+...|.+.++.+++++ +.++.++++. ...+++.|||.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 457899999999999999999999999999864 8888888653 4578899999999
Q ss_pred cEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 481 PTFKIYK-NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 481 Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|+++++. +|+++....|. +.++++++++..
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 9988885 99999898998 999999998865
No 253
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=1.1e-09 Score=118.39 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=75.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEe-----C----------------------cCcHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVD-----V----------------------EESLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d-----~----------------------~~~~~~~~~~ 475 (543)
.+++++|+||++||++|+...|.|+++.++|++ +.++.|. - |....+..+|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 478999999999999999999999999999965 7777663 1 2244678899
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+|.++||++++ ++|+++.+..|. ..+++.++|+..+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 699999999998 99999999997643
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=2.5e-08 Score=82.99 Aligned_cols=196 Identities=15% Similarity=0.100 Sum_probs=105.9
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHL 161 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 161 (543)
+..++.+|..|-..|-+.-|...|.+++.+.|+.+.++..+|..+...|+|+.|.+.|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaF---------------------- 122 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF---------------------- 122 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHh----------------------
Confidence 4556666666667777777777777777777777777777766666666665555544
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
+..++++|.. ..++.++|..++.-|++.-|.+.+.+.-+.+|.+|.... |+. +
T Consensus 123 -------------------ds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L----WLY---l 175 (297)
T COG4785 123 -------------------DSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL----WLY---L 175 (297)
T ss_pred -------------------hhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH----HHH---H
Confidence 3334444444 344455555555566666666666665556666543211 111 1
Q ss_pred HHhhcChHHHHHHHH-HHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------hh
Q 009096 242 NISELRFENAVSSAE-KAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------SI 313 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 313 (543)
-...-++.+|...+. ++...+.+...... +-+..|+..+ ...++++.+-..++ .+
T Consensus 176 ~E~k~dP~~A~tnL~qR~~~~d~e~WG~~i----------------V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTE 238 (297)
T COG4785 176 NEQKLDPKQAKTNLKQRAEKSDKEQWGWNI----------------VEFYLGKISE-ETLMERLKADATDNTSLAEHLTE 238 (297)
T ss_pred HHhhCCHHHHHHHHHHHHHhccHhhhhHHH----------------HHHHHhhccH-HHHHHHHHhhccchHHHHHHHHH
Confidence 122234445544333 33333323222111 1112222211 12233333322222 46
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
+++.+|..+...|+.++|...|+-++..+-
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 788888888888888888888888887653
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=98.98 E-value=9.8e-09 Score=96.68 Aligned_cols=144 Identities=10% Similarity=-0.015 Sum_probs=116.6
Q ss_pred HHHHHHHHhhc---ChHHHHHHHHHHh---hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009096 236 LLKLMFNISEL---RFENAVSSAEKAG---LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309 (543)
Q Consensus 236 ~~~a~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 309 (543)
+.+|......+ ..+.|+.+|.+++ .++|+...++..+..+.....+ .|..- ......+|.+.-+++++++|
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~--~g~~~-~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL--HGKSE-LELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH--hcCCC-chHHHHHHHHHHHHHHhcCC
Confidence 44466555444 3567899999999 9999988887654322111111 11111 34556789999999999999
Q ss_pred CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 310 YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 310 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.|+.++..+|.++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|.-..+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976544
No 256
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=9.2e-08 Score=79.67 Aligned_cols=203 Identities=17% Similarity=0.080 Sum_probs=142.4
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+...+..++..|..|-..|-++-|.-.|.+++.+.|+-+.+++.+|..+...|+|+.|.+.|...++++|.+.-++.+.|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 34467788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET-DAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~l~~~p~~~~~~~~~~a~ 200 (543)
..++.-|++.-|.+.+.+.-+ +.+|-....+ +++ ...-+..+|...+ +++...+.+. .-+. +..
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-----Yl~-----E~k~dP~~A~tnL~qR~~~~d~e~--WG~~-iV~ 207 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-----YLN-----EQKLDPKQAKTNLKQRAEKSDKEQ--WGWN-IVE 207 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChHHHHHH-----HHH-----HhhCCHHHHHHHHHHHHHhccHhh--hhHH-HHH
Confidence 999999999999998877665 3333221111 111 1233555555544 3444332221 1111 222
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCCh-hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPP-SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
. .+|+..+ ...++++.....++.. .......++.+|..+...|+.++|...|+-++..+
T Consensus 208 ~--yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 208 F--YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred H--HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2 2333221 1122333333333322 22333567788999999999999999999887654
No 257
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.95 E-value=2.9e-09 Score=84.68 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=65.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEeCcCc-----------------------HHHHHHcCCCcc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEES-----------------------LAIAKSEGVRTV 480 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~~-----------------------~~~~~~~~v~~~ 480 (543)
++++++.||++||+.|+...+.+.++..++ +++.++.|+++.. ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 679999999999999999999999999999 5799999999885 789999999999
Q ss_pred cEEEEEE-CCeEEEEEcC
Q 009096 481 PTFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 481 Pt~~~~~-~g~~~~~~~g 497 (543)
|+++++. +|+.+.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 9998885 8999988766
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.94 E-value=3.5e-08 Score=77.97 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~ 354 (543)
++..|...++.|+|++|++.|+.+....|.. ..+...+|.+|++.+++++|+..+++-++++|.++ -+++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 4568999999999999999999999988865 57899999999999999999999999999999986 67999999
Q ss_pred HHHHccC---------------HHHHHHHHHHHHhcCCCChHHHHH
Q 009096 355 SNEKLGR---------------WSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 355 ~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
++..+.. ..+|...|++.++..|+++.+...
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999877 899999999999999999877644
No 259
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.94 E-value=2.4e-09 Score=75.67 Aligned_cols=68 Identities=28% Similarity=0.406 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
++..|++++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998888777653
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=2.4e-08 Score=87.43 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAVS 355 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 355 (543)
++.|.-++..|+|.+|...|..-++..|++ +.++++||.+++.+|+|+.|...|..+++-.|++ +++++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 457888999999999999999999999987 6899999999999999999999999999988775 5889999999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
...+|+.++|...|+++++..|+.+.+...
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999887643
No 261
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.93 E-value=5.5e-09 Score=82.27 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=74.3
Q ss_pred hhccCCCCceeeeeeCCCCccccchhHh-H--HHHHhhCC-CeEEEEEeCc--CcHHHHHHcCCCcccEEEEEE--CCeE
Q 009096 420 KAAISSPGVSLVHFKEASSEKCEEISPF-V--NLLCVRYP-YVHFFKVDVE--ESLAIAKSEGVRTVPTFKIYK--NGEK 491 (543)
Q Consensus 420 ~~~i~~~~~~lv~f~~~~c~~c~~~~p~-l--~~l~~~~~-~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~ 491 (543)
..+...+++++|+|+++||++|+.+... | +++.+.+. +..++.+|++ +...++..|++.++|+++++. +|++
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3444568899999999999999998763 3 33433332 5788888887 466899999999999999995 7999
Q ss_pred EEEEcCC-CHHHHHHHHHhcC
Q 009096 492 LKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.++.|. +++++...|++..
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 9999999 9999999988753
No 262
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.93 E-value=2.9e-08 Score=94.25 Aligned_cols=122 Identities=18% Similarity=0.122 Sum_probs=108.8
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
-..+...++++.|+..+++..+.+|+.... ++.++...++-.+|++.+.++++..|.+...+...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev~~~---------------LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEVAVL---------------LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcHHHH---------------HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344556789999999999999999874322 68888889999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+..+...++++.|+...++++.+.|++.+.|+.|+.+|..+|++++|+..++.+=-.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999999999877644333
No 263
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=9.3e-09 Score=92.79 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=93.0
Q ss_pred cCHHHHHHHhhHH-HhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhH
Q 009096 46 VDAEEVKRAGNEM-YRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG---YNRA 118 (543)
Q Consensus 46 ~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (543)
.+...++..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3567888888887 66899999999999999999988 589999999999999999999999999998887 4788
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
++.+|.++..+|++++|...|+++++ .|+..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999998887 44443
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.91 E-value=1.4e-07 Score=81.94 Aligned_cols=181 Identities=16% Similarity=0.096 Sum_probs=140.4
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
++.++..++..|...++.|++++|+..|+.+....|..+.... +.+.++.++++.+++++|+...++-+.+.|.+++
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~q---a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQ---AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHH---HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3445777888899999999999999999999998888866533 3445588999999999999999999999999887
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhccCCCCh-----------------hHHhHHHHHH
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSS--------RRYSEACSAYGEGLKYDSYNS-----------------ILYCNRAICW 322 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~ 322 (543)
+-.++. -.|.+++.. .-..+|+..|+..++..|++. ..-...|..|
T Consensus 107 ~dY~~Y---------lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 107 ADYAYY---------LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred hhHHHH---------HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655432 245544332 234678889999999999872 2234468889
Q ss_pred HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 323 SKMGLWENSIEDCNVALRIQPNY---TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|+++
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999987764 47899999999999999999886554444445554
No 265
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=3.5e-07 Score=95.58 Aligned_cols=225 Identities=15% Similarity=0.039 Sum_probs=171.3
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHH
Q 009096 96 GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKT 175 (543)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (543)
++-.+..+.|++.+..+|+....|...-......++.++|.+..++|+...++.+.... +..|...-.....-|.-+.
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEK--LNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEK--LNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHH--HHHHHHHHhHHHhhCcHHH
Confidence 33445677888889999999999999988999999999999999999884443322211 2223333333344456677
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
..+.|++|.+... .-.+|..+..+|...+.+++|.++|+..++........ |...+..++..++-+.|...+
T Consensus 1516 l~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v------W~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV------WIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH------HHHHHHHHhcccHHHHHHHHH
Confidence 7788888887742 24667778888999999999999999888877755443 444488888888888899999
Q ss_pred HHHhhcCCC--cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHH
Q 009096 256 EKAGLLDYS--NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333 (543)
Q Consensus 256 ~~al~~~p~--~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 333 (543)
.+|++--|. +.+.. ...|+.-++.|+-+.+..+|+..+..+|...++|.-+...-.+.|+.+-+..
T Consensus 1588 ~rAL~~lPk~eHv~~I------------skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFI------------SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHhhcchhhhHHHH------------HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence 999988887 33332 2257788888999999999999999899989999988888888899999999
Q ss_pred HHHHHHhhC
Q 009096 334 DCNVALRIQ 342 (543)
Q Consensus 334 ~~~~al~~~ 342 (543)
.|++++.+.
T Consensus 1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred HHHHHHhcC
Confidence 999988764
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.91 E-value=4.7e-06 Score=75.74 Aligned_cols=227 Identities=24% Similarity=0.225 Sum_probs=165.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCC
Q 009096 95 LGRLTEAVSDCEEAVRLDPGY--NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGD 172 (543)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (543)
.+.+..+...+...+...+.. .......+..+...+++..+...+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 85 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKA------------------------------ 85 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHH------------------------------
Confidence 355666666666666665552 455555555555555555555544332
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH-HHHhhcChHH
Q 009096 173 WKTVLRETDAAIAI-GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM-FNISELRFEN 250 (543)
Q Consensus 173 ~~~A~~~~~~~l~~-~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~g~~~~ 250 (543)
+.. ........+...+..+...+++..++..+..++...+......... +. ++...|++++
T Consensus 86 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 148 (291)
T COG0457 86 -----------LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALL------ALGALYELGDYEE 148 (291)
T ss_pred -----------HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHH------HHHHHHHcCCHHH
Confidence 220 1112245566667777777777778888777777666652222222 34 7889999999
Q ss_pred HHHHHHHHhhcCCC-cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-ChhHHhHHHHHHHHccCH
Q 009096 251 AVSSAEKAGLLDYS-NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-NSILYCNRAICWSKMGLW 328 (543)
Q Consensus 251 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~ 328 (543)
|...+.+++...|. ...... ....+..+...++++.|+..+.+++...+. ....+..++.++...+++
T Consensus 149 a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 149 ALELYEKALELDPELNELAEA----------LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHHHHHHhcCCCccchHHH----------HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 99999999887663 111111 123455578899999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+.|+..+..++...|.....+..++..+...++++++...+.+++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999998888888998888778899999999999999997
No 267
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.91 E-value=9e-09 Score=73.89 Aligned_cols=67 Identities=25% Similarity=0.331 Sum_probs=48.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
..+|...+++++|++++++++.++|+++..++.+|.++..+|++++|+..|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4566677777777777777777777777777777777777777777777777777777776666543
No 268
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.90 E-value=4.8e-09 Score=74.09 Aligned_cols=65 Identities=29% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 323 SKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
...|++++|+..|++++..+|++.++++.+|.++.+.|++++|...+++++..+|+++.++..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45677777777777777777777777777777777777777777777777777777766665544
No 269
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.90 E-value=6.2e-08 Score=75.54 Aligned_cols=94 Identities=26% Similarity=0.218 Sum_probs=84.5
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG---YNRAHQRL 122 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 122 (543)
.++|..|.++-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975443 578999999999999999999999999999888 77888889
Q ss_pred HHHHHHhCCHHHHHHHhcCC
Q 009096 123 ASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a 142 (543)
+.++...|++++|+..+-.+
T Consensus 82 Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999987443
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=3.4e-08 Score=81.08 Aligned_cols=108 Identities=20% Similarity=0.148 Sum_probs=94.1
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHH-HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEI-ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
|.-++..|+|++|...|..++.+.|....- ...+ +.+.|.++++++.++.|+..+.++|+++|.+..++..
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIl--------y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSIL--------YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHH--------HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 888999999999999999999999876542 2222 3568999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
+|.+|.++..|++|++.|+++++.+|....+.-..++
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 9999999999999999999999999987655443333
No 271
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.89 E-value=2.4e-06 Score=77.78 Aligned_cols=269 Identities=14% Similarity=0.027 Sum_probs=180.4
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHH--HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAAT--LTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
+-.+...++.....|++++|.+-|+.++. +|+. ..+-.+|.. -..+|..+.|..+-+.+-...|..+.++...-..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 44556667777888999999988887764 3422 122222222 2347888899999999988889888888887778
Q ss_pred HHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
.+..|+++.|++..+.... ...+..... .. ..++...+...
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR--------------------~r----------------AvLLtAkA~s~- 240 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAER--------------------SR----------------AVLLTAKAMSL- 240 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHH--------------------HH----------------HHHHHHHHHHH-
Confidence 8888888888887754432 000000000 00 00111111111
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
-..+...|...-..+.++.|+........ +..++..|+..++-..++.+.+..|....
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~A------Aralf~d~~~rKg~~ilE~aWK~ePHP~i---------------- 298 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVA------ARALFRDGNLRKGSKILETAWKAEPHPDI---------------- 298 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHH------HHHHHhccchhhhhhHHHHHHhcCCChHH----------------
Confidence 12235667777777888888875544333 78888889999999999988888876432
Q ss_pred HHHHHHhcCCHHHHHHHHHH---HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-
Q 009096 284 RGNNLFSSRRYSEACSAYGE---GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL- 359 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 359 (543)
+..|....--+.++.-+++ ...+.|++.+.....+..-+.-|++..|..--+.+....|. ..++..++.+....
T Consensus 299 -a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAet 376 (531)
T COG3898 299 -ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAET 376 (531)
T ss_pred -HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhcc
Confidence 2233333333344444443 44568999999999999999999999999999999999887 45677788887655
Q ss_pred cCHHHHHHHHHHHHhcCCCCh
Q 009096 360 GRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 360 g~~~~A~~~~~~al~~~p~~~ 380 (543)
|+-.+...++-++++- |.+|
T Consensus 377 GDqg~vR~wlAqav~A-PrdP 396 (531)
T COG3898 377 GDQGKVRQWLAQAVKA-PRDP 396 (531)
T ss_pred CchHHHHHHHHHHhcC-CCCC
Confidence 9999999998888864 4443
No 272
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.87 E-value=1e-08 Score=82.54 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCc---------------------------CcHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVE---------------------------ESLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~---------------------------~~~~~~~~~ 475 (543)
.++++++.||+.||++|....|.|.++.+++.+ +.++.|+.+ ....++..|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 457999999999999999999999999999964 777777541 123577889
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP 498 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~ 498 (543)
++.++|+++++ ++|+++.+..|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999888 489999998874
No 273
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.87 E-value=3.2e-09 Score=102.47 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=83.9
Q ss_pred EEeehhhhhhhccCCCC--ceeeeeeCCCCccccchhHhH---HHHHhhCCCeEEEEEeCcCc----HHHHHHcCCCccc
Q 009096 411 EEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFV---NLLCVRYPYVHFFKVDVEES----LAIAKSEGVRTVP 481 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~--~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~~~~~~~d~~~~----~~~~~~~~v~~~P 481 (543)
..+++....++.+..++ ++++|||++||-.|+++++.. .+...+.+++++.+.|.+++ .++-++||+.++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 44555556677776555 999999999999999999975 35556778999999999864 5678999999999
Q ss_pred EEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIYK-NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++++|. +|++...+.|+ +.+.+.+++++..
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999998 89888889999 9999999998753
No 274
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.87 E-value=9.6e-09 Score=86.17 Aligned_cols=81 Identities=10% Similarity=0.068 Sum_probs=62.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEE------EEEeCcC-----------------------------cHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHF------FKVDVEE-----------------------------SLA 470 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~------~~~d~~~-----------------------------~~~ 470 (543)
+++++|.|||+||++|+.-+|.++++.++ ++.+ ..||.++ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 78999999999999999999999999753 2222 3344432 335
Q ss_pred HHHHcCCCcccEE-EEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 471 IAKSEGVRTVPTF-KIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 471 ~~~~~~v~~~Pt~-~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
++..|||.++|+. +++ ++|+++.++.|. +.+++++.+.
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 7789999999855 444 699999999999 8888877544
No 275
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=2.4e-07 Score=87.49 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=129.4
Q ss_pred HHHHHHHHHccC---hhHHHHHhhcCC---CCCCCCChhHHHHHHHHHHHHHHH----hhcChHHHHHHHHHHhhcCCCc
Q 009096 196 ACKAEAHLKLHQ---NEDADSCLSNMP---KFEHYSPPSQVKFLVWLLKLMFNI----SELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 196 ~~~a~~~~~~~~---~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~ 265 (543)
+.+|......+. .+.|+.+|.+++ .++|+....+..+ ++......+. ......+|....+++++++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~l-A~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLL-AECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 455666655544 466888999999 8888876554444 2222222111 1234568899999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+.+... +|.+....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++++++++|.-
T Consensus 338 a~a~~~------------~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 338 GKILAI------------MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHH------------HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 998643 68889999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHH-HHHccCHHHHHHHHHHHHhcC
Q 009096 346 TKALLRRAVS-NEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 346 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+-...-.+ .+-....++|++.|-+--+..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence 7665544444 455667889999887654443
No 276
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.86 E-value=1.5e-08 Score=72.64 Aligned_cols=70 Identities=27% Similarity=0.427 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
..++...++|++|++++++++..+|+++..+..+|.++..+|++++|+..|+++++..|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999888766554
No 277
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.86 E-value=3.2e-08 Score=88.70 Aligned_cols=102 Identities=28% Similarity=0.401 Sum_probs=80.5
Q ss_pred CCeEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+..+.+.+.|.+++.. ...|+|.||.+.++.|..|...|..|+.+||.++|++|..+..+ ....|.+..+||++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEE
Confidence 556777777777777754 34799999999999999999999999999999999999988765 67899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhc
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 510 (543)
+|++|..+..++|. +.+.|+.+|.++
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999988873 566788888775
No 278
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2e-08 Score=84.83 Aligned_cols=112 Identities=26% Similarity=0.436 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+...|+.++...+|..|+.+|.++|.++|..+..|.+.+.|++++++++.+...+.+++++.|+...+++.+|.+...
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 33466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcC-----CCChHHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRREL-----PGDNEVAESLHNAQ 390 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 390 (543)
...+++|+..+.+|..+. |.-.++...|..+.
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 999999999999997653 22345555555543
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.85 E-value=3.4e-06 Score=73.45 Aligned_cols=197 Identities=15% Similarity=0.040 Sum_probs=130.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---HHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR---AHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (543)
.+..|+..|...++.|+|++|+..|+++....|.. ..+...++.++++.+++++|+...++-+.+.|+++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 57899999999999999999999999999988876 578899999999999999999999999999998765 455
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP--QLVACK 198 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~~~ 198 (543)
..|.+++. ..-. .+ ....-...|+..++..+...|++.- .+...+
T Consensus 113 lkgLs~~~------------~i~~-~~--------------------rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i 159 (254)
T COG4105 113 LKGLSYFF------------QIDD-VT--------------------RDQSAARAAFAAFKELVQRYPNSRYAPDAKARI 159 (254)
T ss_pred HHHHHHhc------------cCCc-cc--------------------cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 55555222 1111 00 1111234567777888888776521 111111
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
..+-..+..+ -+..|..|.+.|.+..|+.-++.+++..|+.......+
T Consensus 160 ~~~~d~LA~~--------------------------Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL------ 207 (254)
T COG4105 160 VKLNDALAGH--------------------------EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREAL------ 207 (254)
T ss_pred HHHHHHHHHH--------------------------HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHH------
Confidence 1111111000 01127778888888888888888888777766554443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
..+..+|..+|-.++|...-.-.-...|++
T Consensus 208 ---~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 208 ---ARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred ---HHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 236777788887777765543333333444
No 280
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.85 E-value=1.2e-08 Score=73.49 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=56.6
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
+..|+++||++|+.+.+.+++ .++.+..+|++++++ +.+.+|+.++||+++. |+. +.|.++++|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 457999999999999998876 368889999987654 4567999999999874 654 67889999998
Q ss_pred HHH
Q 009096 506 SAN 508 (543)
Q Consensus 506 ~~~ 508 (543)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.85 E-value=9.2e-06 Score=73.80 Aligned_cols=237 Identities=26% Similarity=0.245 Sum_probs=174.3
Q ss_pred HHHHHhhHHHh-cCCHHHHHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHh--cCCCChhHHHHHHH
Q 009096 50 EVKRAGNEMYR-KGNFVEALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVR--LDPGYNRAHQRLAS 124 (543)
Q Consensus 50 ~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~ 124 (543)
.....+..... .+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (291)
T COG0457 24 ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGL 103 (291)
T ss_pred HHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 33333333333 57888899999999988876 378889999999999999999999999997 67888888999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE-AHL 203 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~-~~~ 203 (543)
.+...+++..++..+.+++. ..+.. .......+. ++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 104 LLEALGKYEEALELLEKALA-----------------------------------------LDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHc-----------------------------------------CCCCc-chHHHHHHHHHHH
Confidence 99998888888887766654 11111 111111222 566
Q ss_pred HccChhHHHHHhhcCCCCCCC-CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc-HHHHHHHHhHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHY-SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN-VEIASVLTNVKMVVRA 281 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~ 281 (543)
..|+++.|...+.+++...|. ... .......+..+...+++++|+..+.+++...+.. ....
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 205 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNEL----AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL------------ 205 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccch----HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH------------
Confidence 666666666666666554442 111 1122222445677889999999999999888883 4432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
..++..+...+++++|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 346888888999999999999999999987778888888888777899999999999999887
No 282
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.84 E-value=3.7e-08 Score=80.25 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--
Q 009096 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL----------WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR-- 361 (543)
Q Consensus 294 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 361 (543)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999887744 5778889999999999999999999999988764
Q ss_pred ---------HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 362 ---------WSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 362 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
|++|..+|++|...+|++...+..|..+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 89999999999999999999988887654
No 283
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.84 E-value=9.4e-08 Score=95.20 Aligned_cols=145 Identities=13% Similarity=-0.051 Sum_probs=86.4
Q ss_pred HHhcCCcchhh--HHhHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC--------CHHHHHHHhc
Q 009096 74 AISMSPENAAY--RSNRAATLTALGR---LTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG--------QVENARHHLC 140 (543)
Q Consensus 74 al~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~ 140 (543)
+...-|.+..+ ++..|.-+...++ ..+|+.+|+++++++|+++.++..++.++.... +...+.....
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33455555444 4556666665544 678888888888888888888887777765542 2334455554
Q ss_pred CCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCC
Q 009096 141 FPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP 219 (543)
Q Consensus 141 ~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 219 (543)
+++. ..++.. ...+..++......|++++|...+++++.++|. ...|..+|.++...|++++|+..|++++
T Consensus 409 ~a~al~~~~~~------~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 409 NIVALPELNVL------PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HhhhcccCcCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4333 111111 011233344444456666666666677777662 4566666777777777777777777777
Q ss_pred CCCCCCC
Q 009096 220 KFEHYSP 226 (543)
Q Consensus 220 ~~~~~~~ 226 (543)
.++|.++
T Consensus 481 ~L~P~~p 487 (517)
T PRK10153 481 NLRPGEN 487 (517)
T ss_pred hcCCCCc
Confidence 7776664
No 284
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.1e-09 Score=87.59 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=73.3
Q ss_pred eEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCC------c
Q 009096 410 VEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVR------T 479 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~------~ 479 (543)
..-+.....+++.+.. ...++|.|++.|.+.|...+|.+.+++.+|. +++|.+||+...+..+++|+|. .
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ 205 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ 205 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence 3344455566665544 4588999999999999999999999999994 4999999999999999999986 5
Q ss_pred ccEEEEEECCeEEEEEc
Q 009096 480 VPTFKIYKNGEKLKEMI 496 (543)
Q Consensus 480 ~Pt~~~~~~g~~~~~~~ 496 (543)
.||+++|++|+++.|..
T Consensus 206 LPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 206 LPTYILFQKGKEVSRRP 222 (265)
T ss_pred CCeEEEEccchhhhcCc
Confidence 68999999999998754
No 285
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.8e-06 Score=74.65 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=178.6
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
+.+|.. +.++-.|+|..++..-.+.-... ........+.+.|+.+|++...+......- .....+...++.....
T Consensus 10 d~LF~i-Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 10 DELFNI-RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLEL 84 (299)
T ss_pred hhHHHH-HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhC
Confidence 344443 44556799999888777764443 677888899999999999876655544332 1122344444554444
Q ss_pred hCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 009096 129 LGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ 207 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~ 207 (543)
-++.++-+.-+.+.+. ..+... ......-+.++...+++++|+........ .++...-..++.++.+
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn------~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSN------LIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAALNVQILLKMHR 152 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchh------HHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHHHHHHHHHHHH
Confidence 4444433333322221 111111 11234456778889999999988876332 3555566789999999
Q ss_pred hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHH
Q 009096 208 NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN 287 (543)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~ 287 (543)
++-|...++++...+.+..-.+. ..+|+. +.-..+...+|.-.|++.-...|..+... ..++.+
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQL-A~awv~---la~ggek~qdAfyifeE~s~k~~~T~~ll------------nG~Av~ 216 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQL-AQAWVK---LATGGEKIQDAFYIFEELSEKTPPTPLLL------------NGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHH-HHHHHH---HhccchhhhhHHHHHHHHhcccCCChHHH------------ccHHHH
Confidence 99999999999988776522211 123322 12233568899999999887666555542 237889
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHH-HHHHHHHhhCCCCHH
Q 009096 288 LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSI-EDCNVALRIQPNYTK 347 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 347 (543)
.+.+++|++|...++.++..++++++++.|+..+-...|...++. +...+....+|+++-
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999999999999999999999999999999876665 455566666787764
No 286
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.82 E-value=1.4e-07 Score=71.68 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT----KALLRRAVSNEK 358 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~ 358 (543)
..|.++...|+.+.|++.|.+++.+.|..+.+|++.+..+.-.|+.++|++.+++++++..+.. .++..+|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999965543 678999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCC
Q 009096 359 LGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~ 378 (543)
+|+-+.|...|+.+-++...
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 99999999999999888654
No 287
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.82 E-value=5.6e-06 Score=83.33 Aligned_cols=291 Identities=14% Similarity=0.084 Sum_probs=183.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHH
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARH 137 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (543)
....+++.+|+....+.++..|+...+....|.+++++|+.++|..+++..-...+++...+..+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35678999999999999999999999999999999999999999988887777778888888889999999999999999
Q ss_pred HhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH------
Q 009096 138 HLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED------ 210 (543)
Q Consensus 138 ~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~------ 210 (543)
+|++++. .|. .. ..+.+-.+|.+.++|.+-.+.--+..+..|...-..|.....++......++
T Consensus 99 ~Ye~~~~~~P~-ee--------ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 99 LYERANQKYPS-EE--------LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHhhCCc-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 9999987 343 21 1333444555556665544444444556677655556655555555444433
Q ss_pred ---HHHHhhcCCCCC-CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHH-hhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 211 ---ADSCLSNMPKFE-HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA-GLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 211 ---A~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
|....++.++.. +-... .....+ -.++..+|++++|.+.+..- .+..+........ ..+
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~--aE~~Ly---l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~-----------~~~ 233 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESE--AEIILY---LLILELQGKYQEALEFLAITLAEKLTSANLYLEN-----------KKL 233 (932)
T ss_pred HHHHHHHHHHHhccCCccchH--HHHHHH---HHHHHhcccHHHHHHHHHHHHHHhccccchHHHH-----------HHH
Confidence 444555666555 22211 111111 34677788999999988433 2333332222111 135
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCChhHHhH-------------HHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHH
Q 009096 286 NNLFSSRRYSEACSAYGEGLKYDSYNSILYCN-------------RAICWSKMGLWENSIEDCNVALRIQPNYT-KALLR 351 (543)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~ 351 (543)
..+...++|.+-.+...+++...+++...+.. .+..+...+..+..++..++.+.-+...+ -|++.
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le 313 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE 313 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH
Confidence 66677788888888888888888876222111 12222333445555555555555433333 33444
Q ss_pred HHHHHHHccCHHHHHHHHHHHH
Q 009096 352 RAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al 373 (543)
+-.-+...|+.+++...|-+-+
T Consensus 314 l~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 314 LDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred HHHHhcccCChHHHHHHHHHHh
Confidence 4444456677777666554433
No 288
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.82 E-value=1.4e-07 Score=73.58 Aligned_cols=94 Identities=18% Similarity=0.045 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPN---YTKALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 354 (543)
+++.|.++-..|+.++|+.+|++++....+. ..++..+|.++..+|++++|+..+++++...|+ +..+...++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 4568999999999999999999999975444 578999999999999999999999999999898 7788899999
Q ss_pred HHHHccCHHHHHHHHHHHHh
Q 009096 355 SNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~ 374 (543)
++...|++++|+..+-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988775
No 289
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=2.5e-09 Score=101.67 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=76.5
Q ss_pred ehhhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCC---C-eEEEEEeCc--CcHHHHHHcCCCcccEEEEE
Q 009096 414 SSLEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---Y-VHFFKVDVE--ESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 414 ~~~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+.+.|..++- +.+..+|.|+++|||+|+.+.|.+.+++++.. . +.++.|||. .|..+|+.|+|.++||+.+|
T Consensus 44 Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf 123 (606)
T KOG1731|consen 44 LDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYF 123 (606)
T ss_pred eehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeec
Confidence 44566666664 45589999999999999999999999998773 3 889999995 67899999999999999999
Q ss_pred ECC-eE---EEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNG-EK---LKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g-~~---~~~~~g~-~~~~~~~~~~~~~ 511 (543)
.-+ +. =..+.|. .+.++++.+.+.+
T Consensus 124 ~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 124 PPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 622 11 1234465 6888888887654
No 290
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.82 E-value=1.8e-08 Score=79.70 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=53.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEe-Cc--C-----------------cHHHHHHcCCCcccEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVD-VE--E-----------------SLAIAKSEGVRTVPTF 483 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d-~~--~-----------------~~~~~~~~~v~~~Pt~ 483 (543)
.++++++.||++||++|+...|.++++.+++.+ +.++.+. .+ + ..+++..|+|.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 367999999999999999999999999887754 6555552 11 1 1357778888889988
Q ss_pred EEEE-CCeEEEE
Q 009096 484 KIYK-NGEKLKE 494 (543)
Q Consensus 484 ~~~~-~g~~~~~ 494 (543)
+++. +|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 8875 7887664
No 291
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.79 E-value=2.4e-08 Score=86.19 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc--------------------CcHHHHHHcCCCcccEEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE--------------------ESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~--------------------~~~~~~~~~~v~~~Pt~~ 484 (543)
.++++++.||++||++|+...|.+.++.+++ ++.++.+..+ ...++++.|+|.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4678999999999999999999999988764 3333333311 135788999999999876
Q ss_pred EE-ECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 485 IY-KNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 485 ~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
++ ++|+++.+....+.+.++++++.....
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEADREG 181 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHHHHcC
Confidence 66 599988763223778888888865433
No 292
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.78 E-value=2.1e-08 Score=83.31 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=65.8
Q ss_pred CCCceeeeeeCC-CCccccchhHhHHHHHhhC--CCeEEEEEeCcCc---------------------HHHHHHcCCC--
Q 009096 425 SPGVSLVHFKEA-SSEKCEEISPFVNLLCVRY--PYVHFFKVDVEES---------------------LAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~~---------------------~~~~~~~~v~-- 478 (543)
.+++++|.||++ ||++|+...|.+.++.+++ .++.++.+..+.. ..++++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578899999999 9999999999999998875 3477777765532 4688999998
Q ss_pred -------cccEEEEE-ECCeEEEEEcCC-C--HHHHHHH
Q 009096 479 -------TVPTFKIY-KNGEKLKEMINP-S--HQFLEDS 506 (543)
Q Consensus 479 -------~~Pt~~~~-~~g~~~~~~~g~-~--~~~~~~~ 506 (543)
++|+++++ ++|+++.+..|. + ..++++.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 99987666 599999999998 4 4445443
No 293
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.77 E-value=1.8e-08 Score=87.45 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=67.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc-----------CcHHHHHHcCC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE-----------ESLAIAKSEGV-------------- 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~-----------~~~~~~~~~~v-------------- 477 (543)
.++++++.||++||++|+...|.|.++.++|. ++.++.|+++ +....++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 36799999999999999999999999999995 4888888763 12233444443
Q ss_pred ----------------------Cccc----EEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 478 ----------------------RTVP----TFKIYKNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 478 ----------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..+| |+++-++|+++.++.|. +.+++++.|++++..
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1223 44555799999999998 888999999876543
No 294
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.9e-08 Score=96.32 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=87.3
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+...+...-.......+++.|++|||++|+.+.|.+++++..+. .+.+..+|++....++..++|.++||+++|
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 34444444444455668899999999999999999999999998773 499999999999999999999999999999
Q ss_pred ECCeE-EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 487 KNGEK-LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~-~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+|.. .....|. +.+.+..++++.....
T Consensus 226 ~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 226 PPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 98887 5556666 9999999999887664
No 295
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.76 E-value=2.3e-08 Score=93.65 Aligned_cols=117 Identities=21% Similarity=0.442 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+.+.+...+..+.|+.|+..|.++|+++|+++..+-+++.++.+.+++..|+..+.++++++|....+|+..|.+...++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 35578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
++.+|...|++...+.|+++.+...+..+.......+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888776643
No 296
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.75 E-value=4.2e-08 Score=92.39 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA---LLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+|+++..|+++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555533 555555555555555555555555554
No 297
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.73 E-value=1.2e-08 Score=79.83 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=53.7
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcCcH-HHHHHcCCCcccEEEEEE-CCeEE
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEESL-AIAKSEGVRTVPTFKIYK-NGEKL 492 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~~~-~~~~~~~v~~~Pt~~~~~-~g~~~ 492 (543)
...+...+++++++|+++||++|+.+...+ .++.+.. .++..+.++.+... ... ..| .++||++|+. +|+++
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi 93 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVR 93 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCc
Confidence 344456789999999999999999998854 2333333 24555566654221 111 234 6899999995 99999
Q ss_pred EEEcCC
Q 009096 493 KEMINP 498 (543)
Q Consensus 493 ~~~~g~ 498 (543)
.++.|.
T Consensus 94 ~~i~Gy 99 (130)
T cd02960 94 ADITGR 99 (130)
T ss_pred cccccc
Confidence 999984
No 298
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=2e-06 Score=90.11 Aligned_cols=236 Identities=11% Similarity=-0.028 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----hhHHHHHHHHHHHhCCHHHHHHH
Q 009096 64 FVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL-DPGY----NRAHQRLASLYFRLGQVENARHH 138 (543)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 138 (543)
-.+..+.|.+.+..+|+....|...-.-++++++.++|.+.+++|+.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788899999999999999999999999999999999999964 3432 34555555555566766777788
Q ss_pred hcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 139 LCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
|++|.+-.++. ..+..+...|...+.+++|.++++..++... ....+|..++..++..++-+.|...+.++
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88877633332 3467788899999999999999999999876 44788999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHH
Q 009096 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEAC 298 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~ 298 (543)
++.-|...... ..-.-|++.++.|+.+.+...|+..+.-+|.-.+.|..+ ...-.+.|+.+-+.
T Consensus 1591 L~~lPk~eHv~----~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY------------id~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1591 LKSLPKQEHVE----FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY------------IDMEIKHGDIKYVR 1654 (1710)
T ss_pred HhhcchhhhHH----HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH------------HHHHHccCCHHHHH
Confidence 99999842211 111228899999999999999999999999999999765 55667889999999
Q ss_pred HHHHHHhccC--CCChhHHhHHHHHHHH
Q 009096 299 SAYGEGLKYD--SYNSILYCNRAICWSK 324 (543)
Q Consensus 299 ~~~~~al~~~--p~~~~~~~~la~~~~~ 324 (543)
.+|++++.+. |.....++..=.-|.+
T Consensus 1655 ~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 9999999874 4445555544444443
No 299
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.73 E-value=2.2e-05 Score=71.68 Aligned_cols=269 Identities=17% Similarity=0.097 Sum_probs=193.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHH
Q 009096 88 RAATLTALGRLTEAVSDCEEAVRLDPGYN--RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCA 165 (543)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (543)
.|.+-...|+-..|.+.-.++-++-..+. -++..-++.-.-.|+++.|.+-|+.++..|+.... . +-.+-.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRll----G---LRgLyl 162 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLL----G---LRGLYL 162 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHH----h---HHHHHH
Confidence 45666667899999998888875544443 44555577888889999999999998865544321 1 112222
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH-h
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI-S 244 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~ 244 (543)
.....|+.+.|..+-+++-...|.- +......-...+..|+++.|+++.+......--.........+.+.-+.... -
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999998877 5555666677889999999999998665432222222222222222222222 2
Q ss_pred hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
.-+...|...-.++.++.|+......+ -+..+++.|+..++-.+++.+.+..|+ +. ++.+|..
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~------------AAralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ 304 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVV------------AARALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVR 304 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHH------------HHHHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHH
Confidence 345788999999999999998776432 578899999999999999999999886 33 3444444
Q ss_pred ccCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 325 MGLWENSIEDCNVA---LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 325 ~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..--+.++.-++++ ..+.|++.+..+..+..-+..|++..|..--+.+....|....
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 44444455555544 4568999999999999999999999999999999999986544
No 300
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.73 E-value=4.5e-07 Score=81.55 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=120.9
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC------h
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-----AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY------N 116 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 116 (543)
-+++.+++..+...-++.+++.+.+..+.+.... ......+|.++..++.++++++.|++|+....++ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4577888888888888999999888887763222 3567779999999999999999999999875443 3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC---
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS--- 190 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--- 190 (543)
.++..||.++..+.++++|+-+..++.. ...-..+..-.....++.++..++.+|..-.|.++.+++.++.-..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 5678899999999999999998887765 1121223333344456667777777777777777777766553111
Q ss_pred --CHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 191 --SPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 191 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
.......+|.+|...|+.+.|..-|+.+..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 122233456666666666666666666544
No 301
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=2.7e-06 Score=79.61 Aligned_cols=155 Identities=14% Similarity=0.043 Sum_probs=117.3
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------ChhHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEA-VRLDPG--------YNRAH 119 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~ 119 (543)
+........+.+..+...+....+.+..+..+.+.+.+..+..++..|++.+|.+.+... +...|. .-..|
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 344455566677888888888888888887788889999999999999999999887653 222232 12357
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCC----------CCCh-HHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGH----------HPDP-NELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV 188 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 188 (543)
.++|.+++++|.|.-+..+|.++++ .+.+ .....-...+..++.|..+...|+.-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 8899999999999999999988884 1111 1122334567789999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 009096 189 DSSPQLVACKAEAHLK 204 (543)
Q Consensus 189 ~~~~~~~~~~a~~~~~ 204 (543)
.+ |.+|..+++|...
T Consensus 367 ~n-PrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 RN-PRLWLRLAECCIM 381 (696)
T ss_pred cC-cHHHHHHHHHHHH
Confidence 66 7888888887653
No 302
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.72 E-value=6.6e-08 Score=85.09 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=67.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc--------Cc---HHHH-HHcC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE--------ES---LAIA-KSEG-------------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~--------~~---~~~~-~~~~-------------- 476 (543)
.+++++|.||++||++|....|.|.++.++|. ++.++.|+++ .. ...+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 35799999999999999999999999999995 4888888863 11 1121 2222
Q ss_pred --------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 477 --------------------VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 477 --------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|...||.+++ ++|+++.++.|. ++++++..|++++.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1234776666 699999999998 99999999998764
No 303
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=2.6e-05 Score=77.78 Aligned_cols=306 Identities=14% Similarity=0.022 Sum_probs=178.6
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHH--------HHh---cCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDK--------AIS---MSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~--------al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
...|-++|....+..+.+-|.-++-. |+. .+|+ +.-...|..-.++|..++|+..|++.-.
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 34677788877777777766655432 222 2333 2333456677788888888888887654
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH----------HHc
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAA----------IAI 186 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~ 186 (543)
+-.|-.+|...|.+++|.+.-+.-- ....-..+++.+..+...+|.+.|+++|+++ +..
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~D---------RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKD---------RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhcc---------ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 3345566677777777766543211 1111223566666667777777777777654 222
Q ss_pred CC---------CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC--------CCCh-------hHHHHHHHHHHHHHH
Q 009096 187 GV---------DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH--------YSPP-------SQVKFLVWLLKLMFN 242 (543)
Q Consensus 187 ~p---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~a~~~ 242 (543)
+| ...+.+|...|..+...|+.+.|+.+|..+-.... .... ..-...+.+.+|+.|
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 22 12356677778888888888888888876643211 0000 001123456669999
Q ss_pred HhhcChHHHHHHHHHHh------hcCCCcHHHHHHHHhHH---HHHHHHHHHHHHHhcC-CHHHHHHHHHHHh-------
Q 009096 243 ISELRFENAVSSAEKAG------LLDYSNVEIASVLTNVK---MVVRARTRGNNLFSSR-RYSEACSAYGEGL------- 305 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al------~~~p~~~~~~~~l~~~~---~~~~~~~~g~~~~~~~-~~~~A~~~~~~al------- 305 (543)
...|++.+|+..|.++- ++..++.---. +.++. ....+...+..|...| .+..|+.+|.+|-
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~-L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR-LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 99999999999888764 33222211111 11110 0011111222333333 4444444443321
Q ss_pred ----------------ccCC-CChhHHhHHHHHHHHccCHHHHHHHH------HHHHhhC----------------CC--
Q 009096 306 ----------------KYDS-YNSILYCNRAICWSKMGLWENSIEDC------NVALRIQ----------------PN-- 344 (543)
Q Consensus 306 ----------------~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~----------------p~-- 344 (543)
.++| .++.++..-+..+....+|++|...+ +.|+++. |.
T Consensus 1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcC
Confidence 1234 35677777788888888999988764 4444431 21
Q ss_pred -------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 345 -------YTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 345 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
....+-.+|.++.++|.|..|-+-|.+|=
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 12568899999999999999999888764
No 304
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.3e-07 Score=73.76 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=73.7
Q ss_pred hhhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcC----------------cHHHHHHcCC
Q 009096 418 KFKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEE----------------SLAIAKSEGV 477 (543)
Q Consensus 418 ~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~----------------~~~~~~~~~v 477 (543)
....+...++-.++.|.++.|+.|..+...+ .++.+-+ +++.++.+|+.. .+++++.|+|
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 3445556678899999999999999998865 3444333 447777777653 2589999999
Q ss_pred CcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 478 RTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 478 ~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+++||+++|+ +|+.+..+.|+ +++++...++-.
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 9999999996 88999999999 999998888743
No 305
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=1.4e-07 Score=82.71 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=91.6
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY---NRAHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (543)
+++..|..|..++..|+|.+|...|..-++..|++ +.++|.||.+++.+|+|++|...|..+++..|+. +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 44559999999999999999999999999999986 6899999999999999999999999999988775 67899
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
.+|.+...+|+.++|...|+++++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999987
No 306
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.5e-07 Score=76.54 Aligned_cols=103 Identities=29% Similarity=0.369 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCCC----------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKY--------DSYN----------SILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+...|+-++..|+|.+|...|..|+.. .|.+ ...+.|.+.|+...|+|-++++.+..++...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 456899999999999999999998743 3443 4678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 343 PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 343 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
|++..+++.+|.+....=+..+|...|.++++++|.-..+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999999865543
No 307
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=3.8e-07 Score=86.74 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=105.0
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.+...+...++++.|+..+++..+.+|+. ...++.++...++..+|+..+++++...|.+.....
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev---------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~------ 238 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV---------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN------ 238 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH---------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 34556667789999999999999888763 222388888899999999999999999999976643
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 339 (543)
..+..+...++++.|+.+.+++++..|++...|+.|+.+|..+|++++|+-.++.+=
T Consensus 239 ------~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 ------LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 368889999999999999999999999999999999999999999999998887543
No 308
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.69 E-value=2.4e-08 Score=79.20 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc---CCCcccEEEEEE-CCeEEEEEcCCCHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE---GVRTVPTFKIYK-NGEKLKEMINPSHQ 501 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~---~v~~~Pt~~~~~-~g~~~~~~~g~~~~ 501 (543)
.+..++.|..+|||.|...-|.+.++++..|++.+-.+..|++.++.++| |..++||++++. +|+++.++ |.-|+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-gerP~ 119 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GERPK 119 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS-H
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCCCH
Confidence 34567778899999999999999999999999888888888888777665 788999999995 67888877 55556
Q ss_pred HHHHHHHhc
Q 009096 502 FLEDSANLA 510 (543)
Q Consensus 502 ~~~~~~~~~ 510 (543)
.++++++++
T Consensus 120 ~~~~~~~~~ 128 (129)
T PF14595_consen 120 EVQELVDEY 128 (129)
T ss_dssp HHH------
T ss_pred HHhhccccC
Confidence 666666654
No 309
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.68 E-value=1.4e-07 Score=88.83 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=68.3
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhh---HHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAY---RSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
.....+|.++++++++|..++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 66 ~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 66 DGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345789999999999999999999999999999999999999854 999999999999999999999999997
No 310
>smart00594 UAS UAS domain.
Probab=98.68 E-value=1.1e-07 Score=75.52 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=67.9
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCc--CcHHHHHHcCCCcccEEEEEE-CC--
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVE--ESLAIAKSEGVRTVPTFKIYK-NG-- 489 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~-~g-- 489 (543)
...+...++.++|+|+++||+.|+.+...+ .++.+-.. ++.++.+|++ +...++..|++.++|+++++. +|
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 344445678999999999999999987642 23333232 5888888876 456799999999999999994 55
Q ss_pred ---eEEEEEcCC-CHHHHHHHH
Q 009096 490 ---EKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 490 ---~~~~~~~g~-~~~~~~~~~ 507 (543)
+.+.++.|. +++++.+.+
T Consensus 100 ~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 100 RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eeEEEeccccCCCCHHHHHHhh
Confidence 357788898 999998876
No 311
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.66 E-value=4.7e-07 Score=68.94 Aligned_cols=95 Identities=27% Similarity=0.362 Sum_probs=86.5
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASL 125 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 125 (543)
.+-..|..+...|+.+.|++.|.+++.+-|..+.+|.+++..+.-+|+.++|+..+.+++++.... -.++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999999999987543 3578999999
Q ss_pred HHHhCCHHHHHHHhcCCCC
Q 009096 126 YFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~ 144 (543)
|..+|+.+.|...|+.+.+
T Consensus 125 yRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHhCchHHHHHhHHHHHH
Confidence 9999999999999977754
No 312
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.4e-08 Score=82.28 Aligned_cols=99 Identities=27% Similarity=0.399 Sum_probs=94.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
..++.+...|+.++...+|+.|+.+|.++|.++|..+..+.+.+.||+++.+++.+....+++++++|+...+++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCC
Q 009096 126 YFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~ 144 (543)
......|++|+..+.++..
T Consensus 88 ~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHhhccccHHHHHHHHHHH
Confidence 9999999999999988743
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=0.00017 Score=72.28 Aligned_cols=210 Identities=17% Similarity=0.146 Sum_probs=138.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHH----------HhcCCc----------chhhHHhHHHHHHHcCCHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKA----------ISMSPE----------NAAYRSNRAATLTALGRLTEAVSDCEEA 108 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (543)
..+++.|..+...++.+.|+++|+++ +.-+|. ++..|...|..+...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 36788888888899999999999875 333443 4567777888899999999999999887
Q ss_pred Hhc---------------------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-------CCChHHHhHHHHH---
Q 009096 109 VRL---------------------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-------HPDPNELLKLQSF--- 157 (543)
Q Consensus 109 l~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~~~--- 157 (543)
-.. ...+..+-+.+|+.|...|++.+|+.+|.++-. ...+.....+..+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 432 245677889999999999999999999887643 1111111111111
Q ss_pred ---HHHHHHHHhhhhcC-CHHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 158 ---EKHLNRCAESRKIG-DWKTVLRETDAA-----------------------IAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 158 ---~~~~~~~~~~~~~~-~~~~A~~~~~~~-----------------------l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
......+..|...| +...|...|.++ -.++|+..+.++..-+..+....+|++
T Consensus 1019 s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred cCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 11122233333333 444444444332 123677788888888888888888988
Q ss_pred HHHHhhcC------CCC----------------CC---CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 009096 211 ADSCLSNM------PKF----------------EH---YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA 258 (543)
Q Consensus 211 A~~~~~~~------~~~----------------~~---~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 258 (543)
|..++-.+ +.+ .| +.+........+...|.+..++|.|..|-+-|.++
T Consensus 1099 AV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1099 AVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 87765322 111 12 22334444455666699999999998888877665
No 314
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.61 E-value=1.3e-06 Score=69.25 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh--
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS-- 312 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-- 312 (543)
++..|...+..|+|++|++.|+.+....|-.+.+... .+.+|.+++..++|++|+..+++-++++|.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qA---------qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQA---------QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHH---------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 4444667777777777777777777777766544322 23467788888888888888888888877764
Q ss_pred -hHHhHHHHHHHHccC---------------HHHHHHHHHHHHhhCCCCHHH
Q 009096 313 -ILYCNRAICWSKMGL---------------WENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 313 -~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 348 (543)
.+++..|.+++.... ..+|...|++.+...|++.-+
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 467777777777765 789999999999999987643
No 315
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.61 E-value=1.6e-07 Score=68.13 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=52.8
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHH-----cCCCcccEEEEEECCeEEEEEcCCCHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKS-----EGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 504 (543)
++.|+++||++|+.+.+.|+++ ++.+..+|+++.+..... +++.++|++ ++.+|+.+. ..+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 5679999999999999999876 345667888877766655 389999997 577886543 45666776
Q ss_pred HHHH
Q 009096 505 DSAN 508 (543)
Q Consensus 505 ~~~~ 508 (543)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 6654
No 316
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.60 E-value=4.5e-07 Score=77.39 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=75.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------------------------~~~~~~ 473 (543)
.++++++.||++||+.|....|.+.++..+++ ++.|+.|.++. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 56789999999999999999999999999996 58888887653 135678
Q ss_pred HcCCCcccEEEEEE-CCeEEEEEc---------CC-CHHHHHHHHHhcCCCCCCCC
Q 009096 474 SEGVRTVPTFKIYK-NGEKLKEMI---------NP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 474 ~~~v~~~Pt~~~~~-~g~~~~~~~---------g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
.|||..+|+++++. +|+++.+.. +. +.+++++.|+..++..+..-
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 159 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPV 159 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCc
Confidence 99999999988885 999886631 12 67889999998876654443
No 317
>PLN02412 probable glutathione peroxidase
Probab=98.60 E-value=2.1e-07 Score=78.57 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=67.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc--------CcHHH----HHHcC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE--------ESLAI----AKSEG-------------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~--------~~~~~----~~~~~-------------- 476 (543)
.++++++.||++||++|+...|.|.++.++|. ++.++.|+++ ...++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 35789999999999999999999999999996 4888888753 21121 12211
Q ss_pred --------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 477 --------------------VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 477 --------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|...||.+++ ++|+++.++.|. ++++++..|++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 3445877777 699999999998 99999999987654
No 318
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=1.2e-05 Score=69.45 Aligned_cols=241 Identities=14% Similarity=0.127 Sum_probs=160.6
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCC-----h-hHHHHHHHHHHHhCCHHHHHHHhcC
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLD-------------PGY-----N-RAHQRLASLYFRLGQVENARHHLCF 141 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~-----~-~~~~~la~~~~~~g~~~~A~~~~~~ 141 (543)
....|...-.++.++...++|...+...-+++ |+. | ......|.+...+|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 35677777888888888888888776665554 111 1 1233446666677777666654422
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHhhhhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 142 PGHHPDPNELLKLQSFEKHLNRCAESRKIGDW-KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
. .........-.+.+.. +..++.+++-+. .+.+.+..++..+|+|.-.+..+.++++
T Consensus 148 L---------------~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 148 L---------------KTVVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred H---------------HHHHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 2 2222222222333333 556666666553 4567778899999999999999999998
Q ss_pred CCCCC-ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 009096 221 FEHYS-PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS 299 (543)
Q Consensus 221 ~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~ 299 (543)
.+|.. +.....+ |.+..+.|+.+.|..+|+.+-+....-.... .......+.+.++.-.++|.+|..
T Consensus 206 ~~~e~~p~L~s~L------gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q------~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 206 YYPEQEPQLLSGL------GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ------GKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred hCCcccHHHHHHH------HHHHHhcccHHHHHHHHHHHHHHHhhhhccc------hhHHHHhhhhhheecccchHHHHH
Confidence 77443 3333333 8889999999999999986543221110000 001112456778888889999999
Q ss_pred HHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 009096 300 AYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVS 355 (543)
Q Consensus 300 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 355 (543)
.|.+++..+|.++.+-++.|.|+..+|+...|++..+.++...|... ...+++..+
T Consensus 274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999888743 334444443
No 319
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.59 E-value=6e-08 Score=70.56 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ----PN---YTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
|+-..++.++|.+|..+|++++|+.+|++++++. ++ ...++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445677888888888888888888888887651 12 2456788888888888888888888888775
No 320
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.58 E-value=8e-05 Score=75.34 Aligned_cols=228 Identities=14% Similarity=-0.015 Sum_probs=157.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCC
Q 009096 93 TALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGD 172 (543)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (543)
...+++.+|+....+.++..|+..-+...-|..+.++|+.++|..+++..-..+..+. ..+-..-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~-------~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD-------LTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch-------HHHHHHHHHHHHHhh
Confidence 3568999999999999999999999999999999999999999977765544211111 123344567889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH---
Q 009096 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE--- 249 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--- 249 (543)
+++|...|++++..+|. ....+.+-.+|.+.++|.+-.+.--+.-+..|.++...+... ..+.......+
T Consensus 93 ~d~~~~~Ye~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-----Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-----SLILQSIFSENELL 165 (932)
T ss_pred hhHHHHHHHHHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-----HHHHHhccCCcccc
Confidence 99999999999999998 566666777888888876644444444446677755443332 22232222222
Q ss_pred ------HHHHHHHHHhhcC-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hc-cCCCChhHHhHHHH
Q 009096 250 ------NAVSSAEKAGLLD-YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG-LK-YDSYNSILYCNRAI 320 (543)
Q Consensus 250 ------~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~-~~p~~~~~~~~la~ 320 (543)
-|....++.++.. +-...+-..+ .-.++..+|++++|.+.+..- .+ ..+.+...-.....
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-----------yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIIL-----------YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHH-----------HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3445556666555 2222111111 234567789999999999433 33 33444444455677
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
.+..+++|.+-.+...+++..++++
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCcc
Confidence 7888999999999999999999987
No 321
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.58 E-value=5.4e-06 Score=72.54 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=67.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-----------CcHHHHHHcCCCcccEEEEEE-CC-eEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-----------ESLAIAKSEGVRTVPTFKIYK-NG-EKL 492 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-----------~~~~~~~~~~v~~~Pt~~~~~-~g-~~~ 492 (543)
.+..++.|+.+.|+.|+.+.|.+..++++| ++.+..|++| .+..+++++||..+|+++++. ++ +..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 677899999999999999999999999998 8888888887 347899999999999998886 45 444
Q ss_pred EEEcCC-CHHHHHHHH
Q 009096 493 KEMINP-SHQFLEDSA 507 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~ 507 (543)
.-..|. +.++|.+-|
T Consensus 199 pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 199 PVSQGFMSLDELEDRI 214 (215)
T ss_pred EEeeecCCHHHHHHhh
Confidence 445688 988887643
No 322
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=4.2e-06 Score=70.86 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=104.2
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCC------
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS-RRYSEACSAYGEGLKYDSYN------ 311 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------ 311 (543)
+.+|. ..+.++|+.++++++++..+-...... +.-...+|.+|... .++++|+.+|+.+-+.....
T Consensus 81 ~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~a------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 81 ANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMA------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHH------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 44444 448999999999998887665544322 11235678888665 89999999999998764332
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT-------KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
...+...+..-..+++|.+|+..|+++....-++. +-++.-|.|++-..+.-.+...+++..+++|.-.+.++
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 34555667777889999999999999988765554 34567788899889999999999999999998665543
No 323
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.56 E-value=5.4e-07 Score=64.65 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=57.7
Q ss_pred eeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcC-C-CHHHHHHHHH
Q 009096 432 HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMIN-P-SHQFLEDSAN 508 (543)
Q Consensus 432 ~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~~~~~~~ 508 (543)
.+.+++|+.|..+...+.++..+++ +.+--+|+.+.+++ .+|||.++||+++ ||+.+ +.| . +.++++++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 3467789999999999999999984 87777888777777 9999999999944 88854 557 5 9999999885
No 324
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.56 E-value=1.8e-07 Score=75.09 Aligned_cols=83 Identities=25% Similarity=0.445 Sum_probs=70.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc-CcHHHHHHcC--CCcccEEEEEECCeEEEEEcC--C-
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-ESLAIAKSEG--VRTVPTFKIYKNGEKLKEMIN--P- 498 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~- 498 (543)
..++++.||++||++|+.+.|.+.++.++++. +.+..+|.. ..+.++..++ +..+|+++++.+|+.+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 67889999999999999999999999999985 999999997 8899999999 999999999999987666665 3
Q ss_pred CHHHHHHHHH
Q 009096 499 SHQFLEDSAN 508 (543)
Q Consensus 499 ~~~~~~~~~~ 508 (543)
+...+.....
T Consensus 112 ~~~~~~~~~~ 121 (127)
T COG0526 112 PKEALIDALG 121 (127)
T ss_pred CHHHHHHHhc
Confidence 5555554443
No 325
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.56 E-value=1.3e-05 Score=65.54 Aligned_cols=151 Identities=15% Similarity=0.043 Sum_probs=114.9
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh-cCCCcHHHHHHHHhHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL-LDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~ 281 (543)
.+.=+.+.......+.+...|... ..+.+|.....+|++.+|...|++++. +..+++...
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvq-------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l------------ 127 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQ-------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML------------ 127 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHH-------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH------------
Confidence 333344444444445555555542 122338889999999999999999884 455555543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSY--NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
..++++.+..+++..|...+++..+.+|. .+.....+|.++...|.+.+|...|+.++...|+ +.+....+..+.++
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q 206 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQ 206 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence 34788999999999999999999998875 4778888999999999999999999999999886 67788889999999
Q ss_pred cCHHHHHHHHHHHH
Q 009096 360 GRWSEAVRDYEALR 373 (543)
Q Consensus 360 g~~~~A~~~~~~al 373 (543)
|+..+|..-+....
T Consensus 207 gr~~ea~aq~~~v~ 220 (251)
T COG4700 207 GRLREANAQYVAVV 220 (251)
T ss_pred cchhHHHHHHHHHH
Confidence 98888776554443
No 326
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.4e-07 Score=79.74 Aligned_cols=101 Identities=32% Similarity=0.501 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+..-|+-|++.++|..|+..|.+.|+....+ +..|.|+|.|...+|+|..|+..+.+++.++|.+..++++-|.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 5678999999999999999999999886444 568999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhcCCCChH
Q 009096 357 EKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..+.++.+|..+.+..++++-+...
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999988888888877776544433
No 327
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.9e-05 Score=67.00 Aligned_cols=193 Identities=13% Similarity=0.052 Sum_probs=124.9
Q ss_pred HhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHH
Q 009096 128 RLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG----V-DSSPQLVACKAEAH 202 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p-~~~~~~~~~~a~~~ 202 (543)
-.+.+++|.+.|.++- ..|...++|..|-..|.++-... . .+....|...+.+|
T Consensus 26 g~~k~eeAadl~~~Aa---------------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy 84 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA---------------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY 84 (288)
T ss_pred CCcchHHHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 3457888888776552 33344455555555555554331 1 11223333334444
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 281 (543)
. ..+..+|+.++++++++..+.............+|.+|... .++++|+.+|+.+-+...........- ..+
T Consensus 85 k-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN------KC~ 157 (288)
T KOG1586|consen 85 K-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN------KCL 157 (288)
T ss_pred h-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH------HHH
Confidence 3 34788888888888777666544444333344447777665 899999999999876655443322110 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCh-------hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNS-------ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 348 (543)
...+......++|.+|++.|++.....-++. ..++.-|.|++...+.-.+...+++..+++|...+.
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 3456667788999999999999887655443 345667899999899999999999999999987644
No 328
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=7.3e-06 Score=76.85 Aligned_cols=321 Identities=12% Similarity=0.061 Sum_probs=189.7
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHH-HcCCHHHHHHHHHHHHh--cC---C---------
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLT-ALGRLTEAVSDCEEAVR--LD---P--------- 113 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~--~~---p--------- 113 (543)
..+...+...+..+.|+..++.++..-.++..+...+++.+.+.+ +.|.... ....+.... .+ |
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~ 96 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSL 96 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhh
Confidence 355667777888999999999999988888777777777776544 4444322 122222111 11 1
Q ss_pred -CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009096 114 -GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP 192 (543)
Q Consensus 114 -~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 192 (543)
+....+++.|.+++....+..|+......+....+-...... ..-+..-..+....+.++|+.++.-.-++.
T Consensus 97 ~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa--~v~~l~~~l~~~t~q~e~al~~l~vL~~~~----- 169 (696)
T KOG2471|consen 97 KQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAA--SVTLLSDLLAAETSQCEEALDYLNVLAEIE----- 169 (696)
T ss_pred hcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 234567888888888888888888765544311111100000 001111122223334444443332211110
Q ss_pred HHHHHHHHH-HHHccChhHHHHHhhcCCCCCCCC--ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 193 QLVACKAEA-HLKLHQNEDADSCLSNMPKFEHYS--PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 193 ~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
+.. ....|+...+-.....+-.....+ ...........+....+....+..-+..-.+-+..+..+.+...
T Consensus 170 ------~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l 243 (696)
T KOG2471|consen 170 ------AEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMAL 243 (696)
T ss_pred ------HhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHH
Confidence 000 000111111111111111000000 00001111222234455666666667666666666666665553
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hccCCC--------ChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG-LKYDSY--------NSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+ .++.++..|+|.+|.+.+... +...|. ....|+++|.+++++|.|.-+..+|.++++
T Consensus 244 ~L------------Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 244 LL------------KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred HH------------HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 22 578889999999999988654 233333 245689999999999999999999999996
Q ss_pred h---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 341 I---------QP---------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 341 ~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
. .| ...+.+|+.|..|...|+.-.|.++|.++.+....+|.+|-.+..+-..-.+
T Consensus 312 N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 312 NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 1 12 2457899999999999999999999999999999999999888886655443
No 329
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.53 E-value=1.7e-07 Score=74.74 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=55.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCc-------------------------HHHHHHcC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEES-------------------------LAIAKSEG 476 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~-------------------------~~~~~~~~ 476 (543)
++.+.++|.+.||++|+.+-|.+.++.++. +.+.++.|+-|.. +++..+|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 588999999999999999999887666544 4477777766643 46889999
Q ss_pred CCcccEEEEEE-CCeEEEE
Q 009096 477 VRTVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 477 v~~~Pt~~~~~-~g~~~~~ 494 (543)
|.++|++++.+ +|+.+.+
T Consensus 113 v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cCcCceeEEecCCCCEehH
Confidence 99999999887 9987754
No 330
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=1.8e-07 Score=68.03 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=56.0
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc----CC---cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM----SP---ENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
|.-+..+..+|.++...|+|++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456778899999999999999999999999975 12 22578899999999999999999999999875
No 331
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.48 E-value=3.9e-07 Score=75.94 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------cHHHHHH-cC---------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------SLAIAKS-EG--------------- 476 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------~~~~~~~-~~--------------- 476 (543)
++++++.||++||+ |....|.|.++.+++. ++.++.|.++. ....+++ ++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~ 100 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGEN 100 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCCC
Confidence 67899999999999 9999999999999995 48888886531 1122322 22
Q ss_pred --------CCccc-----------EEEEE-ECCeEEEEEcCC-CHHHHHHH
Q 009096 477 --------VRTVP-----------TFKIY-KNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 477 --------v~~~P-----------t~~~~-~~g~~~~~~~g~-~~~~~~~~ 506 (543)
+.++| |.+++ ++|+++.++.|. +.++++..
T Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 101 AHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 45555 699999999998 88877654
No 332
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.44 E-value=7.6e-08 Score=81.01 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=80.0
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.+.....+ .+..++.|+++||+.|+...|.++.++.--.+ +.+.+||+..++-+.-+|=|...|||+-+++| +.
T Consensus 30 ~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG-eF 106 (248)
T KOG0913|consen 30 DEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG-EF 106 (248)
T ss_pred cccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc-cc
Confidence 444555553 47889999999999999999999998765444 89999999999999999999999999999999 56
Q ss_pred EEEcCC-CHHHHHHHHHhc
Q 009096 493 KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~ 510 (543)
.|+.|. ++..+..+++..
T Consensus 107 rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 107 RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred ccccCcccchhHHHHHHhh
Confidence 788898 999999999854
No 333
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.44 E-value=1.9e-07 Score=68.42 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
...+...+++++|+|+++||++|+.+...+ .++.+.+ .++.++.+|.+.........+ .++|+++++.
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 334456689999999999999999998866 3444322 569999999987665443222 6799999874
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.43 E-value=2e-05 Score=75.61 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=94.5
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCh-hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 288 LFSSRRYSEACSAYGEGLKYDSYNS-ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
....|+...|+.++..|+...|... ....+||.++.+-|-...|-..+.+++.++...+-.++.+|..+..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3446889999999999999988654 567889999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 367 RDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 367 ~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+.|+.|++++|+++.+...|..+..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999998887665
No 335
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.6e-07 Score=78.90 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=81.4
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
......++.||++||.+|..+...++.+++..+++.|++++.+..++|+..+.|..+|+++++.+|+.+.++.|..+..+
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 36778899999999999999999999999988899999999999999999999999999999999999999999976777
Q ss_pred HHHHHhcCCC
Q 009096 504 EDSANLAPSP 513 (543)
Q Consensus 504 ~~~~~~~~~~ 513 (543)
...++.....
T Consensus 95 ~~~~~~~~~~ 104 (227)
T KOG0911|consen 95 VSKVEKLAES 104 (227)
T ss_pred HHHHHHhhhh
Confidence 7777766543
No 336
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.42 E-value=1.3e-06 Score=72.87 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=64.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeC--------cC---cHHHHHH-cC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDV--------EE---SLAIAKS-EG-------------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~--------~~---~~~~~~~-~~-------------- 476 (543)
.+++++|.||++||++|....|.+.++.++|. ++.++.+++ +. ....+++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 35778999999999999999999999999985 488888875 11 1122221 22
Q ss_pred ---------C---CcccE-----EEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 477 ---------V---RTVPT-----FKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 477 ---------v---~~~Pt-----~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+ .++|+ +++-++|+++.++.|. +.+++...|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1 14684 5555799999999998 999999988765
No 337
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=2.3e-06 Score=64.13 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=83.0
Q ss_pred eehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 413 ISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 413 ~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+.+....++++. ..+.+++.|.-.|-+.|..+...|.+++.+..+ ..++.+|+++-++..+-|++...||+++|.|+
T Consensus 8 L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 8 LHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred cccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 344455556653 367889999999999999999999999999998 78899999999999999999999999999877
Q ss_pred eEEE---------EEcCC--CHHHHHHHHHhcCCCC
Q 009096 490 EKLK---------EMINP--SHQFLEDSANLAPSPV 514 (543)
Q Consensus 490 ~~~~---------~~~g~--~~~~~~~~~~~~~~~~ 514 (543)
+-+. .+.++ +++++.+.|+...-..
T Consensus 88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred ceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence 5442 34444 8999999999765443
No 338
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.36 E-value=2e-06 Score=70.78 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=66.3
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCcc-
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRTV- 480 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~~- 480 (543)
++++++.|| +.||+.|....|.+.++.+++. ++.++.|..+. ...+++.|||...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678999999 5899999999999998888773 47777766543 3468889999988
Q ss_pred --------cEEEEEE-CCeEEEEEcCC-CHHHHHHHH
Q 009096 481 --------PTFKIYK-NGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 481 --------Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~ 507 (543)
|+++++. +|+++..+.|. ..+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8888875 89999999998 777777665
No 339
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=3.1e-05 Score=63.38 Aligned_cols=151 Identities=17% Similarity=0.045 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC-CCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 171 GDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK-FEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
=|.+.......+.+...|.. .-.+.++..+..+|++.+|...|++++. +.-+++. .++.+++..+..+++.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a------~lLglA~Aqfa~~~~A 141 (251)
T COG4700 70 LDPERHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA------MLLGLAQAQFAIQEFA 141 (251)
T ss_pred cChhHHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH------HHHHHHHHHHhhccHH
Confidence 34555555556666666653 4567789999999999999999999875 3444433 3445599999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHH
Q 009096 250 NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 329 (543)
.|...+++..+.+|........+ -.|..+...|++.+|...|+.++...|. +......+..+.++|+.+
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~L----------l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHL----------LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLR 210 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchH----------HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchh
Confidence 99999999998887643322211 2688999999999999999999999987 778888899999999988
Q ss_pred HHHHHHHHHHh
Q 009096 330 NSIEDCNVALR 340 (543)
Q Consensus 330 ~A~~~~~~al~ 340 (543)
+|..-+..+.+
T Consensus 211 ea~aq~~~v~d 221 (251)
T COG4700 211 EANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHHH
Confidence 88776665543
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.34 E-value=1.2e-05 Score=65.95 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF---SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
|+.|.+.++.....+|.+.+.+..+.. .+..++..-. ...-+++|+.-|++|+.++|+...+++++|.+|..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~-----ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGG-----ALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHH-----HHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHH-----HHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 678899999999999999987654432 2333333311 22457899999999999999999999999999987
Q ss_pred ccC-----------HHHHHHHHHHHHhhCCCCHHH
Q 009096 325 MGL-----------WENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 325 ~g~-----------~~~A~~~~~~al~~~p~~~~~ 348 (543)
++. |++|..+|+++...+|++...
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 754 788999999999999997643
No 341
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.33 E-value=1.8e-06 Score=60.33 Aligned_cols=60 Identities=33% Similarity=0.482 Sum_probs=51.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHH---HcCCCcccEEEEEECC
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAK---SEGVRTVPTFKIYKNG 489 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~---~~~v~~~Pt~~~~~~g 489 (543)
++.|+.+||+.|..+.+.+.++....+++.+..+|++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46899999999999999999984445679999999998876654 8899999999999877
No 342
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.32 E-value=1.6e-06 Score=54.58 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=24.0
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
.++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345555555555555555555555555555555555555543
No 343
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=3.6e-05 Score=66.55 Aligned_cols=243 Identities=11% Similarity=0.029 Sum_probs=167.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-------------------hhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-------------------AAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
+....|...-..+.+...+++|...+...-++|..+ ......-|.+...+|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 455677777778888889999988877665554221 1122344556666677666665554
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCH-HHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 107 EAVRLDPGYNRAHQRLASLYFRLGQV-ENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
..... ..--..-.+++.. +..+..+++- .-...+....++...|.|.-.+..+.++++
T Consensus 147 ~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KR-------------l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 147 KLKTV--------VSKILANLEQGLAEESSIRLWRKR-------------LGRVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred HHHHH--------HHHHHHHHHhccchhhHHHHHHHH-------------HHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 43321 1111111122222 2222222211 112244566777889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
.+|+..+.+...+|.+-.+.|+.+.|..+++++-+....-...........+.+.++.-.+++.+|...|.+++..+|.+
T Consensus 206 ~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 206 YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN 285 (366)
T ss_pred hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc
Confidence 99888899999999999999999999999996654433333333444455666888999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh---hHHhHHHHH
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS---ILYCNRAIC 321 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 321 (543)
+.+. .+.|.++.-.|+...|++..+.+++..|... .+.+++...
T Consensus 286 ~~a~------------NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 286 AVAN------------NNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred hhhh------------chHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 8774 3479999999999999999999999998753 344444433
No 344
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.29 E-value=3.9e-05 Score=68.21 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----------HHHHHHcCCCcccEEEEEE-C-CeEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----------LAIAKSEGVRTVPTFKIYK-N-GEKL 492 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----------~~~~~~~~v~~~Pt~~~~~-~-g~~~ 492 (543)
....++.|+.+.|+.|+.+.|.+..++++|+ +.+..|++|.. ..+++++||..+|+++++. + ++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEE
Confidence 4578999999999999999999999999984 77777777744 4589999999999988886 5 3444
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.-..|. +.++|.+-|-......
T Consensus 229 pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 229 PLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEeeccCCHHHHHHHHHHHHhcc
Confidence 445688 9999988887665544
No 345
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0039 Score=59.13 Aligned_cols=354 Identities=16% Similarity=0.030 Sum_probs=208.7
Q ss_pred cccccccccccccCC---CCCCCCcccccccc---CHHHHHHHhhHHH-hcCCHHHHHHHHHHHHhcC---Ccc----hh
Q 009096 18 NYGHGSIVRSCSSNI---NNNNNNVKTSNVAV---DAEEVKRAGNEMY-RKGNFVEALKLYDKAISMS---PEN----AA 83 (543)
Q Consensus 18 ~~g~~~~~~~~~~~~---a~~~~~~~~~~~~~---~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~ 83 (543)
..|.++..|..+... ++++++......|. .+.....+|..++ -..+++.|...++++..+. |.. ..
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 356666666666432 34444443333322 3455677777655 5789999999999998753 332 36
Q ss_pred hHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHH---
Q 009096 84 YRSNRAATLTALG-RLTEAVSDCEEAVRLDPGYN----RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ--- 155 (543)
Q Consensus 84 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--- 155 (543)
+...++.+|.... .+..|...+++++++....+ ...+.|+.+..-..++..|++.+.--....++.....+.
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~f 169 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHH
Confidence 7788999999987 88999999999999987665 456788999999999999999865443322222111000
Q ss_pred ---------------HHHHHHH--------------------------HHHhhhhcCCHHHHHHHHHHHH---Hc-CC--
Q 009096 156 ---------------SFEKHLN--------------------------RCAESRKIGDWKTVLRETDAAI---AI-GV-- 188 (543)
Q Consensus 156 ---------------~~~~~~~--------------------------~~~~~~~~~~~~~A~~~~~~~l---~~-~p-- 188 (543)
.+..... .-..|...|+...+...+++.. .. .+
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 0000011 1122334455544444444322 11 11
Q ss_pred ---------CCCHHHHHH------HHHHH-------HHccChhHHHHHhhcCCCCCCCC------Ch--hHHHHHHHHHH
Q 009096 189 ---------DSSPQLVAC------KAEAH-------LKLHQNEDADSCLSNMPKFEHYS------PP--SQVKFLVWLLK 238 (543)
Q Consensus 189 ---------~~~~~~~~~------~a~~~-------~~~~~~~~A~~~~~~~~~~~~~~------~~--~~~~~~~~~~~ 238 (543)
..++..... -+.+| ...|-+++|.++-++++...... .. .......+-.+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 111111100 01111 12344566666555554332111 11 11222233344
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-C--hhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-N--SILY 315 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~ 315 (543)
..+-.-.|++.+|++....+.+..-..+.-...-+ ....-..-+|.-....+.|+.|...|..|.+.... + +-.-
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~--~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA--HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH--hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66777789999998888777644332222110000 01111233677777888999999999999887543 3 3455
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNY----------TKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
.++|..|.+.|+-+.-.+.++. +.|.+ ..+++..|...+..+++.||...+.+.+++.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 6789999998875544444433 44442 2567888999999999999999999999987
No 346
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0041 Score=59.92 Aligned_cols=73 Identities=7% Similarity=-0.000 Sum_probs=67.1
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
++.++.+|.|.++|+.+...+-.+ .+++....|++.+...|..+.+|.......+..++|+...+.|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 667889999999999998877666 9999999999999999999999999999999999999999999998753
No 347
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.28 E-value=1.5e-06 Score=81.77 Aligned_cols=97 Identities=33% Similarity=0.423 Sum_probs=92.3
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
+..+-..|..++..+.|+.|+..|.+||+++|+++..+.+++.++.+.+++..|+..+.++++.+|....+|++.|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 44566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCCCC
Q 009096 128 RLGQVENARHHLCFPGH 144 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~ 144 (543)
.++++.+|+..|++...
T Consensus 84 ~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKK 100 (476)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 99999999999998877
No 348
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.27 E-value=4.2e-06 Score=69.09 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC----------------------c-HHHHHHcCCCc-
Q 009096 425 SPGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE----------------------S-LAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~----------------------~-~~~~~~~~v~~- 479 (543)
.++++++.||+.| |++|+...|.|.++.++++++.|+.|++|. . ..++..|||..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 3578999999988 699999999999999999888888887752 1 45778888863
Q ss_pred -----ccEEEEEE-CCeEEEEEcCC---CHHHHHHHH
Q 009096 480 -----VPTFKIYK-NGEKLKEMINP---SHQFLEDSA 507 (543)
Q Consensus 480 -----~Pt~~~~~-~g~~~~~~~g~---~~~~~~~~~ 507 (543)
.|+.+++. +|+++....|. ...++++.|
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 68877775 99999988864 445565554
No 349
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.25 E-value=2.5e-06 Score=73.38 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=63.7
Q ss_pred CCce-eeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------c-HH----HHHH----------------
Q 009096 426 PGVS-LVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------S-LA----IAKS---------------- 474 (543)
Q Consensus 426 ~~~~-lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------~-~~----~~~~---------------- 474 (543)
++++ ++.+|++||++|+...|.+.++.++|. ++.++.|+++. . .. +.++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 4544 556799999999999999999999985 48888887531 0 00 1111
Q ss_pred --------------------cCCCcccE----EEEEECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 475 --------------------EGVRTVPT----FKIYKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 475 --------------------~~v~~~Pt----~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+++.++|+ +++-++|+++.++.|. +.+++.+.|++.+.
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13557894 5555799999999998 88889988887653
No 350
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.25 E-value=4.7e-06 Score=59.61 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=51.3
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc----CCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE----GVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
++.|+.+||++|..+.+.+++ .++.+..+|++......+.+ ++.++|++++ +| ..+.|.++++|++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 467899999999999988876 35777788888766554444 7899999975 55 3566888888876
Q ss_pred HH
Q 009096 506 SA 507 (543)
Q Consensus 506 ~~ 507 (543)
++
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 53
No 351
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.24 E-value=2.5e-06 Score=53.70 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=21.0
Q ss_pred hHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 84 YRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555444
No 352
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.22 E-value=1.3e-06 Score=50.98 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 335 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777777777777664
No 353
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.22 E-value=8.4e-06 Score=60.10 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=57.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcC--CCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEG--VRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
++.|+.+||+.|....+.|+++..++.++.+..+|++.. .++....+ +.++|+++ .||+.+. |+ ++|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~--~~~ 75 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC--TDF 75 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH--HHH
Confidence 567899999999999999999998888899999999864 24555444 58999975 5887643 33 567
Q ss_pred HHHHHhcC
Q 009096 504 EDSANLAP 511 (543)
Q Consensus 504 ~~~~~~~~ 511 (543)
.++++...
T Consensus 76 ~~~~~~~~ 83 (85)
T PRK11200 76 EAYVKENL 83 (85)
T ss_pred HHHHHHhc
Confidence 77776654
No 354
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.5e-05 Score=67.80 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
.+-..|+-|++.++|..|+..|.+.++..-.++++...+ |.+++.+....|+|..|+....+++.++|.+..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavL--------Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVL--------YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 333449999999999999999999998887777765554 456899999999999999999999999999999
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
+++.=|.|++.+.++.+|..+++..+.++.+
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999998877644
No 355
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.18 E-value=0.00045 Score=65.86 Aligned_cols=139 Identities=15% Similarity=0.032 Sum_probs=85.8
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCChhHHhH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-DSYNSILYCN 317 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~ 317 (543)
|.+..++|+.++|++.++..++..|....... ..++-.++...+.|.++...+.+--+. -|.++...+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~I----------renLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNI----------RENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhH----------HHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 77777777777777777777776664322111 123566777777777777777665333 2555555555
Q ss_pred HHHHHHH-ccC---------------HHHHHHHHHHHHhhCCCCHHHHHHHHH------HHHHccCHHHHHHHHHHHHhc
Q 009096 318 RAICWSK-MGL---------------WENSIEDCNVALRIQPNYTKALLRRAV------SNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 318 la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~la~------~~~~~g~~~~A~~~~~~al~~ 375 (543)
.+.+-.+ .++ -..|.+...+|++.||.-+..+..+-. -..+.|+ .||+.+---.++.
T Consensus 336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~h 414 (539)
T PF04184_consen 336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQH 414 (539)
T ss_pred HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHH
Confidence 5554332 111 235778899999999987765543322 2455666 8888887777766
Q ss_pred CCCChHHHHHHHH
Q 009096 376 LPGDNEVAESLHN 388 (543)
Q Consensus 376 ~p~~~~~~~~l~~ 388 (543)
-.+-+.+...|.-
T Consensus 415 Wk~veGAL~lL~~ 427 (539)
T PF04184_consen 415 WKRVEGALNLLHC 427 (539)
T ss_pred HhcCHhHHHHHHH
Confidence 6655665555543
No 356
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.16 E-value=0.0071 Score=57.08 Aligned_cols=137 Identities=12% Similarity=-0.003 Sum_probs=94.1
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
.+...|-.+.+++++++|...|.++.+...+.+ +.+.++-.--+-+++.+.-...+-..-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 456678889999999999999999987655443 344444444455677777666666666778888888888899
Q ss_pred HHHHhCCHHHHHHHhcCCCCC---CCh-----HHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 009096 125 LYFRLGQVENARHHLCFPGHH---PDP-----NELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAI 186 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 186 (543)
..++.++|.+|++.+...-.. ..+ .........-.-...+.++...|.+.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999987543321 111 11111111222234567788899999998888777654
No 357
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.16 E-value=0.0001 Score=68.14 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhccCCCCh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS-SRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~ 312 (543)
+|+.......+.+..+.|...|.+|.+..+-...++.. .|.+.+. .++.+.|...|+.+++..|.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~------------~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVA------------YALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHH------------HHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 34445677777888999999999998666656666532 4666555 5677779999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
..|......+...++.+.|...|++++..-|... ..|......-.+.|+.+...+..+++.+..|++..+..
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999999999999999998876654 67888888889999999999999999999999666553
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.16 E-value=2.6e-06 Score=76.42 Aligned_cols=95 Identities=22% Similarity=0.389 Sum_probs=90.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWS 363 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 363 (543)
.+.-.+..|.+++|++.|..++.++|..+..+..++.++.++++...|++.|..++.++|+....|-.+|.+...+|+|+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 009096 364 EAVRDYEALRRELPG 378 (543)
Q Consensus 364 ~A~~~~~~al~~~p~ 378 (543)
+|..++..+.+++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999998754
No 359
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.15 E-value=0.00085 Score=66.58 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=89.5
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHH------HHhc----CCcch-hhHHhHHHHHHHcCCHHHHHHHHHHHHhc--------
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDK------AISM----SPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRL-------- 111 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~------al~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 111 (543)
|-..|..+-+..++++|+++|++ ++++ .|... ..--..|.-+...|+++.|+..|-.+-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai 743 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAI 743 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHh
Confidence 33445556666778888888765 3333 33321 22233466677778888888776543211
Q ss_pred ----------------C-CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 112 ----------------D-PGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 112 ----------------~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
+ ..-...|-..+.-|...|+|+-|.+.|.++-. .......|-+.|+|+
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------------~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL---------------FKDAIDMYGKAGKWE 808 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch---------------hHHHHHHHhccccHH
Confidence 0 01123344567777788888888887766532 223344566777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
.|...-.+.. .|......|...+.-+-..|+|.+|.+.|-.+
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 7776665554 24444556666677777777777776665443
No 360
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.15 E-value=2.1e-06 Score=50.16 Aligned_cols=32 Identities=38% Similarity=0.500 Sum_probs=17.9
Q ss_pred HHHHHhcCCcchhhHHhHHHHHHHcCCHHHHH
Q 009096 71 YDKAISMSPENAAYRSNRAATLTALGRLTEAV 102 (543)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 102 (543)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 361
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.15 E-value=1.2e-05 Score=67.88 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=58.9
Q ss_pred CCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCccc
Q 009096 426 PGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRTVP 481 (543)
Q Consensus 426 ~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~~P 481 (543)
++++++.||+.| |++|....|.|.++.+++.++.++.|..|. ...+++.|||...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 568999999999 999999999999999888777777776653 12678899998777
Q ss_pred ---------EEEEEE-CCeEEEEEcC
Q 009096 482 ---------TFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 482 ---------t~~~~~-~g~~~~~~~g 497 (543)
+.+++. +|+++....+
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEEC
Confidence 777774 9999988754
No 362
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.14 E-value=5.9e-06 Score=60.99 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=46.0
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-----HHHHHcCCCcccEEEEEECCeEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-----AIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
++.|+++||++|..+.+.++++... +.+.++.+|.++.. .+.+..|+.++|++ |.||+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 4679999999999999999998622 23677777776543 36777899999997 4578654
No 363
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0079 Score=57.19 Aligned_cols=330 Identities=14% Similarity=0.013 Sum_probs=198.1
Q ss_pred HHHHHHHhhHHHhcC-CHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhc-----------
Q 009096 48 AEEVKRAGNEMYRKG-NFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRL----------- 111 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----------- 111 (543)
.++...++.++.+.. .+..|...+++++++....+ ...+.++..+.-..++..|++.+.--.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~ 167 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM 167 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH
Confidence 456667788888776 88899999999999866554 45677888888888888888774321110
Q ss_pred ------------CCCCh---------------------------hHHHHHHHH-HHHhCCHHHHHHHhcC---CCC----
Q 009096 112 ------------DPGYN---------------------------RAHQRLASL-YFRLGQVENARHHLCF---PGH---- 144 (543)
Q Consensus 112 ------------~p~~~---------------------------~~~~~la~~-~~~~g~~~~A~~~~~~---a~~---- 144 (543)
.|+.. ..+..+-.+ |...|+...+...+++ .+.
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 11100 112222222 2233444333333321 111
Q ss_pred -----------CCChHHHhHH--HHHHHHHHH--HHhhhhcCCHHHHHHHHHHHHHcCC---CC---CH-------HHHH
Q 009096 145 -----------HPDPNELLKL--QSFEKHLNR--CAESRKIGDWKTVLRETDAAIAIGV---DS---SP-------QLVA 196 (543)
Q Consensus 145 -----------~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~l~~~p---~~---~~-------~~~~ 196 (543)
.+.+.....+ ..+..+..+ -......|-+++|.++-++++.... .. .+ ..+.
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 1111111111 011111111 1222456788888888888876521 11 11 1233
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCCh--hH--HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPP--SQ--VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
.+..|-.-.|++.+|++....+.......+. .. ......+.+|......+.++.|...|..+.+..... +.+...
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~~ 406 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAFC 406 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHHH
Confidence 4667777889999999888776654333322 11 111123344777777888999999999998764332 222222
Q ss_pred HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q 009096 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------SILYCNRAICWSKMGLWENSIEDCNVALRIQPN- 344 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 344 (543)
-.++|..|.+.|+-+.-.+.++..-..+... ..+++..|...+..+++.+|...+.+.++....
T Consensus 407 --------nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae 478 (629)
T KOG2300|consen 407 --------NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE 478 (629)
T ss_pred --------HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh
Confidence 1468999999887665555544432222111 456777888899999999999999999987521
Q ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 345 -----YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 345 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
..-.+..+|.+....|+..++....+-++++...-+++...|
T Consensus 479 d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqL 525 (629)
T KOG2300|consen 479 DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQL 525 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHH
Confidence 123456788889999999999999999988876655544333
No 364
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00043 Score=59.47 Aligned_cols=119 Identities=9% Similarity=0.026 Sum_probs=73.1
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCChhHHhH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------DSYNSILYCN 317 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 317 (543)
...++++|+..|++++.+...+......... +-..+.++.+..+|++|-..+.+-... .++....+..
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va 195 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFEL------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVA 195 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHH------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHH
Confidence 4455666777777766544333322211111 123577788888888887777654332 3444556666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRI----QPNYTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
...+|+...+|..|..+++..-++ .|++..+.-+|-..| ..|+.++....+
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 777788888999999999987765 344555555554444 456777665544
No 365
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.09 E-value=9e-06 Score=65.27 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=58.8
Q ss_pred CCCceeeeeeCC-CCccccchhHhHHHHHhhCC--CeEEEEEeCcCc---------------------HHHHHHcCCC--
Q 009096 425 SPGVSLVHFKEA-SSEKCEEISPFVNLLCVRYP--YVHFFKVDVEES---------------------LAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~---------------------~~~~~~~~v~-- 478 (543)
.++++++.||.. ||+.|....+.+.++..+++ ++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999998 99999999999999998885 689888887642 3688999999
Q ss_pred ----cccEEEEEE-CCeEEEE
Q 009096 479 ----TVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 479 ----~~Pt~~~~~-~g~~~~~ 494 (543)
.+|+++++. +|+++.+
T Consensus 104 ~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TTSEESEEEEEEETTSBEEEE
T ss_pred cCCceEeEEEEECCCCEEEeC
Confidence 999888886 7877653
No 366
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.09 E-value=2.4e-05 Score=65.48 Aligned_cols=84 Identities=11% Similarity=-0.001 Sum_probs=62.4
Q ss_pred CCCceeeeeeCC-CCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEA-SSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~~ 480 (543)
.++++++.||+. ||+.|....+.+.++.+++. ++.|+.|..|. ...+++.|||...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 357899999975 68889999998988888773 47777776653 2457889998754
Q ss_pred ------------cEEEEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 481 ------------PTFKIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 481 ------------Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
|+.+++ ++|+++..+.|+ ..+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 565666 599999999998 5555555443
No 367
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.08 E-value=0.00032 Score=62.13 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=67.2
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------cHHHHHHcCCCcccEEEEEE-C-CeEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------SLAIAKSEGVRTVPTFKIYK-N-GEKL 492 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------~~~~~~~~~v~~~Pt~~~~~-~-g~~~ 492 (543)
....++.|+.+.|+.|..+.|.+..++++| ++.+..|.+|. +...++++||..+|+++++. + |+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 457899999999999999999999999998 45555555553 23467899999999998886 4 4555
Q ss_pred EEEcCC-CHHHHHHHHHhcCC
Q 009096 493 KEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.-..|. +.++|.+-|.....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 556688 99999887776543
No 368
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.07 E-value=6.8e-06 Score=63.43 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=52.7
Q ss_pred CCCceeeeeeC-------CCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcH-------HHHH--HcCCCcccEEEEEE
Q 009096 425 SPGVSLVHFKE-------ASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESL-------AIAK--SEGVRTVPTFKIYK 487 (543)
Q Consensus 425 ~~~~~lv~f~~-------~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~-------~~~~--~~~v~~~Pt~~~~~ 487 (543)
.++++++.|.+ +|||.|....|.+.+.-...| +..|+.+.+...+ ..-. .++|.++||++-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 45677887775 599999999999998887776 4888888875322 2222 59999999999998
Q ss_pred CCeEEEEEcCC---CHHHHHHHHH
Q 009096 488 NGEKLKEMINP---SHQFLEDSAN 508 (543)
Q Consensus 488 ~g~~~~~~~g~---~~~~~~~~~~ 508 (543)
.| .|+.+. +.+.++.+++
T Consensus 98 ~~---~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 98 TG---ERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp SS----EEEHHHHH-HHHHHHHHH
T ss_pred CC---CccchhhhccHHHHHHHhc
Confidence 77 445553 6666666654
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.07 E-value=0.011 Score=61.57 Aligned_cols=303 Identities=15% Similarity=0.119 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhc-CCc---chhhHHhHHHHHH-HcCCHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHhCCHH
Q 009096 65 VEALKLYDKAISM-SPE---NAAYRSNRAATLT-ALGRLTEAVSDCEEAVRLDPG--YN----RAHQRLASLYFRLGQVE 133 (543)
Q Consensus 65 ~~A~~~~~~al~~-~p~---~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~ 133 (543)
..|+.+++-+++. .+. ...+++.+|.+++ ...+++.|..++.+++.+... .. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4578888888842 221 2577889999998 689999999999999887643 32 34556788888888877
Q ss_pred HHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--CC-CHHH--HHHHHHHHHHccCh
Q 009096 134 NARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV--DS-SPQL--VACKAEAHLKLHQN 208 (543)
Q Consensus 134 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~-~~~~--~~~~a~~~~~~~~~ 208 (543)
|...+++.++.............-.++ +.......+++..|++.++....... .+ ...+ ....+.++...+..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 999998887721111111111111111 22222233899999999999887752 22 1122 22345566667777
Q ss_pred hHHHHHhhcCC------CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHH---hh---cCC------Cc-----
Q 009096 209 EDADSCLSNMP------KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA---GL---LDY------SN----- 265 (543)
Q Consensus 209 ~~A~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a---l~---~~p------~~----- 265 (543)
+++++.++++. ..++....+.......+..-.+....|+++.+...+++. +. ..+ ++
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777776552 233443223333323333344566677766665554433 21 111 00
Q ss_pred ------------HHHHHHHHhHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----C---CCC-------------
Q 009096 266 ------------VEIASVLTNVK--MVVRARTRGNNLFSSRRYSEACSAYGEGLKY----D---SYN------------- 311 (543)
Q Consensus 266 ------------~~~~~~l~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~---p~~------------- 311 (543)
+.... |-... .+..+.--|......+..++|.+++.++++. . +..
T Consensus 276 ~~~~~~~~~~~~~~~f~-wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFS-WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred ecccccccCCCceeEEe-ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 00000 00000 1111223466667777777887777777653 1 111
Q ss_pred ------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 312 ------SILYCNRAICWSKMGLWENSIEDCNVALRIQ---PN------YTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 312 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
..+.+..+.+..-++++..|....+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 2344557788888999999999998877653 22 36778999999999999999999998
No 370
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.06 E-value=3.3e-05 Score=67.42 Aligned_cols=107 Identities=10% Similarity=0.024 Sum_probs=72.6
Q ss_pred CCceee-eeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc---------------------------CcHHHHHHc
Q 009096 426 PGVSLV-HFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE---------------------------ESLAIAKSE 475 (543)
Q Consensus 426 ~~~~lv-~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~---------------------------~~~~~~~~~ 475 (543)
++.+++ .||++||+.|..-.+.|.++.+++. ++.++.+.+| ....+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 444544 6899999999999998888877763 3555555443 235688899
Q ss_pred CCC------cccEEEEEE-CCeEEEEE-----cCCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccC
Q 009096 476 GVR------TVPTFKIYK-NGEKLKEM-----INPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTG 537 (543)
Q Consensus 476 ~v~------~~Pt~~~~~-~g~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 537 (543)
||. .+|+++++. +|+++... .|.+.+++.+.|+.+.....- + ...|++|. |..|+..
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~-~----~~~p~~w~~g~~~~~~ 176 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKR-K----VATPANWQPGQEGIVP 176 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhc-C----CCcCCCCCcCCceecC
Confidence 985 589888885 99887665 245899999999875432111 1 11377783 5555543
No 371
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.06 E-value=7.5e-06 Score=48.21 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
No 372
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.06 E-value=3.2e-05 Score=59.38 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=74.8
Q ss_pred eehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCccc-EEEEEEC
Q 009096 413 ISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVP-TFKIYKN 488 (543)
Q Consensus 413 ~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P-t~~~~~~ 488 (543)
+.+.-..++++ +.++.+++.|..+|-+.|..+...|.+++.+.++ ..++.+|+++.++.-+-|.+. .| |+++|-+
T Consensus 5 L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 5 LHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp E-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred cCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence 33444455555 4578899999999999999999999999999988 889999999999999999998 77 5677767
Q ss_pred CeEEEE---------EcCC--CHHHHHHHHHhc
Q 009096 489 GEKLKE---------MINP--SHQFLEDSANLA 510 (543)
Q Consensus 489 g~~~~~---------~~g~--~~~~~~~~~~~~ 510 (543)
|+-+.- +.+. +++++.+.|+..
T Consensus 84 nkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 84 NKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp TEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred CeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 776532 3334 789999998864
No 373
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.06 E-value=0.0038 Score=62.25 Aligned_cols=164 Identities=16% Similarity=0.027 Sum_probs=117.6
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCC-ChhHHHHHHHHHHHHHHH----hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYS-PPSQVKFLVWLLKLMFNI----SELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
..--.|+-+.+++.+.++.+...-. +-....+..++.....+. .....+.|.+.+....+..|+..-..
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl------ 270 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL------ 270 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH------
Confidence 3334578889999999887632222 222222222222221222 34567889999999999999876653
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT-KALL 350 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~ 350 (543)
...|.++...|+.++|++.|++++.....- .-.++.+|.++..+.+|++|..+|.+..+.+.-.. -..|
T Consensus 271 ------~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 271 ------FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred ------HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 347999999999999999999998643332 35678899999999999999999999998765433 3346
Q ss_pred HHHHHHHHccCH-------HHHHHHHHHHHhcC
Q 009096 351 RRAVSNEKLGRW-------SEAVRDYEALRREL 376 (543)
Q Consensus 351 ~la~~~~~~g~~-------~~A~~~~~~al~~~ 376 (543)
..|.|+...|+. ++|.+.|.++-.+.
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 778999999999 77777777776553
No 374
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.05 E-value=1.7e-05 Score=59.16 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=67.4
Q ss_pred EeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCc----HHHHHHcCCC-cccEE
Q 009096 412 EISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEES----LAIAKSEGVR-TVPTF 483 (543)
Q Consensus 412 ~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~----~~~~~~~~v~-~~Pt~ 483 (543)
.+.+.+++++++.. .+++++.=.+++||-..+....|++.....++ +.++.+|+-+. ..|+++|||. --|-+
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45677788887755 88999999999999999999999999888887 99999999775 4689999997 45999
Q ss_pred EEEECCeEEEEEcCC--CHHHH
Q 009096 484 KIYKNGEKLKEMINP--SHQFL 503 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~--~~~~~ 503 (543)
++++||+.+..-.-. +.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 999999999875432 66554
No 375
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.03 E-value=3.5e-05 Score=56.73 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=56.6
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcC--CCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEG--VRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
++.|..+|||.|..+...|+++..+++++.+..+|++.. .++.+..| +.++|+++ .||+.+ .|. ++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---gG~--~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---GGC--TDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe---cCH--HHH
Confidence 567889999999999999999988878888888888753 34666666 47999984 477653 233 577
Q ss_pred HHHHHhcC
Q 009096 504 EDSANLAP 511 (543)
Q Consensus 504 ~~~~~~~~ 511 (543)
.+++++..
T Consensus 75 ~~~~~~~~ 82 (86)
T TIGR02183 75 EQLVKENF 82 (86)
T ss_pred HHHHHhcc
Confidence 77777644
No 376
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00018 Score=61.76 Aligned_cols=175 Identities=13% Similarity=0.017 Sum_probs=118.5
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
+..-+.+|...++|++|..++.++.+-...+...+....++-..+.+...+..+.++..+|+++..+.-++...-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd----- 108 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD----- 108 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-----
Confidence 334456666677777777777777765555555555555555557777788888888888888875432211100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhh------C
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRI------Q 342 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~ 342 (543)
.+......+--..+..+.++|+.+|++++.+-..+ .+.+...+.++.+...+++|-..+.+-... .
T Consensus 109 --tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 109 --TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred --hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 00001234555667788999999999998774333 356667788899999999998888775433 2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 343 PNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 343 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
|+...++...-.+++...+|..|..+|+...++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 4444666677777788889999999999987763
No 377
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.01 E-value=1.5e-05 Score=46.94 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++|+.+|.++..+|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 378
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.00 E-value=0.0037 Score=58.96 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCC----CCCCChhHHHHHHHHHHHHHHHh---hcChHHHHHHHHH-HhhcC
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKF----EHYSPPSQVKFLVWLLKLMFNIS---ELRFENAVSSAEK-AGLLD 262 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~-al~~~ 262 (543)
.+.+...+-.+|....+|+.-+++.+.+-.. .++.+.....+ |.++.+ .|+.++|+..+.. .....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~y------afALnRrn~~gdre~Al~il~~~l~~~~ 213 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQY------AFALNRRNKPGDREKALQILLPVLESDE 213 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHH------HHHHhhcccCCCHHHHHHHHHHHHhccC
Confidence 3555667777899999999999988887665 22233322222 777777 8999999999999 45666
Q ss_pred CCcHHHHHHHHhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHH-
Q 009096 263 YSNVEIASVLTNVKMVVRARTRGNN--LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL- 339 (543)
Q Consensus 263 p~~~~~~~~l~~~~~~~~~~~~g~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al- 339 (543)
+.+++.+.++..+ ++.+-.. .......++|+..|.++.+.+|+ ...-.|++.++...|.-.+.....++..
T Consensus 214 ~~~~d~~gL~GRI-----yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 214 NPDPDTLGLLGRI-----YKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred CCChHHHHHHHHH-----HHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 7777777665433 1111111 11233489999999999999965 4555667777777775433332222222
Q ss_pred hh-----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 340 RI-----------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 340 ~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
.+ .-.+...+-.++.+..-.|++++|.+.+++++++.|..-.....+....
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 11 1234455667888888899999999999999999887766555444443
No 379
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.00 E-value=4.9e-05 Score=64.99 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=76.1
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
++++++.|| ++||+.|....+.|.++.+++. ++.++.|..|. ...+++.|||
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 468899989 9999999999999998888873 46566555442 3578899998
Q ss_pred C----cc--cEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccCCC
Q 009096 478 R----TV--PTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTGES 539 (543)
Q Consensus 478 ~----~~--Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 539 (543)
. ++ |+++++. +|+++..... .+.+++.+.|+.+-....-.+ ..-|+.|. |..|+....
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g----~~~p~~w~~~~~~~~~~~ 181 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPG----EVCPAKWKEGEATLAPSL 181 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCC----eEeCCCCCcCCcceecCH
Confidence 3 66 8777775 9998876432 378888888875432211111 22477787 666665543
No 380
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.98 E-value=1.1e-05 Score=47.42 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=26.8
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888863
No 381
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.97 E-value=0.031 Score=58.16 Aligned_cols=313 Identities=15% Similarity=0.021 Sum_probs=190.3
Q ss_pred cCHHHHHHHhhHHH-hcCCHHHHHHHHHHHHhcCCc--c----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---C
Q 009096 46 VDAEEVKRAGNEMY-RKGNFVEALKLYDKAISMSPE--N----AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG---Y 115 (543)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (543)
.++...+.+|..++ ...++++|..++++++.+... . ..+.+.++.++.+.+... |+..+++.++...+ .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46678899999988 679999999999999877533 2 234567788998888888 99999999987544 2
Q ss_pred hh-HHHHH--HHHHHHhCCHHHHHHHhcCCCC----CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC-
Q 009096 116 NR-AHQRL--ASLYFRLGQVENARHHLCFPGH----HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG- 187 (543)
Q Consensus 116 ~~-~~~~l--a~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 187 (543)
.. ..+.+ ...+...+++..|++.++.... ..++.. .+...+..+......+..+.+++..+++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~-----~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~ 210 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV-----FVLASLSEALLHLRRGSPDDVLELLQRAIAQAR 210 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Confidence 22 12222 2333334799999999987765 223322 22334445556667777777887777764321
Q ss_pred -----CCC-CH--HHHHH--HHHHHHHccChhHHHHHhhcC---C---CCCC-------C-------------------C
Q 009096 188 -----VDS-SP--QLVAC--KAEAHLKLHQNEDADSCLSNM---P---KFEH-------Y-------------------S 225 (543)
Q Consensus 188 -----p~~-~~--~~~~~--~a~~~~~~~~~~~A~~~~~~~---~---~~~~-------~-------------------~ 225 (543)
+.. .+ .++.. .-.++...|+++.+...+++. + ...+ + .
T Consensus 211 ~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~ 290 (608)
T PF10345_consen 211 SLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLV 290 (608)
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeE
Confidence 111 11 22222 233555667766655554322 1 0110 0 0
Q ss_pred ----ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH--------------HHHHHHHhHHHHHHHHHHHHH
Q 009096 226 ----PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV--------------EIASVLTNVKMVVRARTRGNN 287 (543)
Q Consensus 226 ----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--------------~~~~~l~~~~~~~~~~~~g~~ 287 (543)
+.....+..++.-|......+..++|.++++++++.-.+.. .....+............+..
T Consensus 291 f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~ 370 (608)
T PF10345_consen 291 FSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWC 370 (608)
T ss_pred EeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 11122223444447777777877788888888774321111 001111111122223457788
Q ss_pred HHhcCCHHHHHHHHHHHhccC---CC------ChhHHhHHHHHHHHccCHHHHHHHHH--------HHHhhCCCCH---H
Q 009096 288 LFSSRRYSEACSAYGEGLKYD---SY------NSILYCNRAICWSKMGLWENSIEDCN--------VALRIQPNYT---K 347 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~---~ 347 (543)
.+-.+++..|......+.... |. .+..++..|..+...|+.+.|...|. .+....+.+. -
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 888999999998888776542 22 36788999999999999999999998 3333333332 3
Q ss_pred HHHHHHHHHHHccCHHH
Q 009096 348 ALLRRAVSNEKLGRWSE 364 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~ 364 (543)
+..++..++...+....
T Consensus 451 a~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 451 AALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHhHhhcccch
Confidence 45677777776665333
No 382
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.97 E-value=5e-05 Score=64.83 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=64.6
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++.+++.|| +.||+.|....|.|.++.+++. ++.++.|.+|. ...+++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 578999999 7999999999999999988873 46666665442 2357788
Q ss_pred cCCC------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhc
Q 009096 475 EGVR------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~ 510 (543)
|||. .+|+++++. +|+++....+. +.+++.+.|++.
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8886 567777775 99999888653 467777777764
No 383
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00017 Score=64.78 Aligned_cols=160 Identities=9% Similarity=-0.067 Sum_probs=115.9
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc-CCCcHHHHHHHHhHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL-DYSNVEIASVLTNVKM 277 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 277 (543)
+.+....|++.+|....+++++-.|.+.- ++-..-.+++.+|+...-...+++.+.. +|+-|-. .++..+
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDll------a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~-sYv~Gm-- 180 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLL------AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY-SYVHGM-- 180 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhh------hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH-HHHHHH--
Confidence 45566678888888888888888888733 3333356777888888888888888866 5555432 222221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY----TKALLRRA 353 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 353 (543)
.+..+...|-|++|.+.-+++++++|.+..+...++.++...|+..++.++..+.-..-... ..-|..-|
T Consensus 181 ------yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 181 ------YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred ------HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 46677888999999999999999999999988899999999999999888877643321110 12355677
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 009096 354 VSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~al 373 (543)
.++..-+.|+.|++.|.+-+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 88888889999998887644
No 384
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.97 E-value=3.5e-05 Score=60.06 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=67.8
Q ss_pred cCCCCceeeeeeCC----CCccccchh--HhHHHHHhhCCCeEEEEEeCcC--cHHHHHHcCCCcccEEEEEE--C--Ce
Q 009096 423 ISSPGVSLVHFKEA----SSEKCEEIS--PFVNLLCVRYPYVHFFKVDVEE--SLAIAKSEGVRTVPTFKIYK--N--GE 490 (543)
Q Consensus 423 i~~~~~~lv~f~~~----~c~~c~~~~--p~l~~l~~~~~~~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~--~--g~ 490 (543)
-...+.++|+++++ ||..|+..- |.+.+... .++.++..|++. ..+++..+++.++|++.++. + .+
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 35688999999999 888887543 33444433 358888889874 46799999999999988882 3 45
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++.++.|. +++++...|.....
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHh
Confidence 68999999 99999999887643
No 385
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.96 E-value=6.5e-05 Score=65.93 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=74.9
Q ss_pred CCc-eeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHc
Q 009096 426 PGV-SLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSE 475 (543)
Q Consensus 426 ~~~-~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~ 475 (543)
+++ +++.|+++||+.|..-.+.|.++..++. ++.++.+.+|. ...++..|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 344 5679999999999999999999988873 46666666553 24578889
Q ss_pred CCC-------cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-----ccccccC
Q 009096 476 GVR-------TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-----STAVVTG 537 (543)
Q Consensus 476 ~v~-------~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 537 (543)
|+. .+|+++++. +|+++.... |.+.+++.+.|+.+... .+-+ -..|++|. |..||-.
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~-~~~~----~~~p~~w~~~~~~g~~~~~~ 182 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTA-DQYG----VALPEKWPNNYLIKDHVIVP 182 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhh-hhcC----CCcCCCCCCCCCCCCcEEEc
Confidence 984 679888885 899887653 34788888888864221 1111 12477897 5666643
No 386
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.96 E-value=3.5e-05 Score=78.83 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCceee-eeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHH
Q 009096 426 PGVSLV-HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 426 ~~~~lv-~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 503 (543)
++++-+ -|.+++|+.|......+.+++...|++..-.+|....++++++|+|+++|++++ ||+.+ +.|. +.++|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHH
Confidence 456544 557999999999999999999999999999999999999999999999999877 77755 3476 99999
Q ss_pred HHHH
Q 009096 504 EDSA 507 (543)
Q Consensus 504 ~~~~ 507 (543)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8876
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.96 E-value=0.003 Score=64.48 Aligned_cols=283 Identities=14% Similarity=0.038 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHHhC--
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTAL-----GRLTEAVSDCEEAVRL-----DPGYNRAHQRLASLYFRLG-- 130 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 130 (543)
...+|..+++.+-+. .+..+...+|.||..- .|.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888888766 5688889999998875 6899999999998771 1225678889999998853
Q ss_pred ---CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 131 ---QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK---IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 131 ---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
++..|+.+|.++.....+.. .+.++.++.. ..++..|..+|..+..... ..+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a---------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDA---------QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYEL 372 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchH---------HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh
Confidence 67889999988877444443 3334444333 2478899999999988753 5566777777764
Q ss_pred c----cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 205 L----HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 205 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
= .+...|..++.++.+..+ +.....+..+. ....+++..+...+.......-+.......+.
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~-----~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l------- 438 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFY-----EYGVGRYDTALALYLYLAELGYEVAQSNAAYL------- 438 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHH-----HHccccccHHHHHHHHHHHhhhhHHhhHHHHH-------
Confidence 3 467889999999887772 22222221111 11226666666655554444333322211110
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 281 ARTRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM----GLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 281 ~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
......... ..+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ..+.+++
T Consensus 439 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nl 512 (552)
T KOG1550|consen 439 -LDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNL 512 (552)
T ss_pred -HHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhh
Confidence 001101111 2245666666666554 45577888899988765 46999999999998876 8999999
Q ss_pred HHHHHHc---cCHHHHHHHHHHHHhcCCCC
Q 009096 353 AVSNEKL---GRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 353 a~~~~~~---g~~~~A~~~~~~al~~~p~~ 379 (543)
|.++..- ..+..|.++|.++.+.+...
T Consensus 513 g~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 513 GYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 9998642 22789999999998876643
No 388
>PRK15000 peroxidase; Provisional
Probab=97.95 E-value=6.3e-05 Score=65.35 Aligned_cols=109 Identities=11% Similarity=0.098 Sum_probs=77.2
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.||. .||+.|....|.|.++.+++. ++.++.+.+|. ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 35789999999 599999999999999888874 46666665552 235778
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccCC
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTGE 538 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 538 (543)
.|||. ++|+.+++. +|+++....| .+.+++.+.|+.+.-.. ..+ ...|+.|. |..+|+.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~~~-~~~----~~~p~~w~~g~~~~~~~ 185 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHE-EHG----DVCPAQWEKGKEGMNAS 185 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhHH-hcC----CCcCCCCCCCCceeccC
Confidence 88987 689877775 9999887665 37888888887543211 111 12477785 66666653
No 389
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.1e-05 Score=65.45 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=88.3
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--------CCcc----------hhhHHhHHHHHHHcCCHHHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISM--------SPEN----------AAYRSNRAATLTALGRLTEAVSDCEEA 108 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (543)
....+...|+-++..|+|.+|...|+.|+.. .|.. ...+.+.+.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998743 3443 356789999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+..+|.+..+++..|.+....-+..+|...|.+++.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998886
No 390
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.94 E-value=4.4e-05 Score=63.54 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=59.7
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------c--HHHHHHcCCC--
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------S--LAIAKSEGVR-- 478 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~--~~~~~~~~v~-- 478 (543)
+++++.|| ++||+.|....|.+.++.+++. ++.++.|..+. . ..++..||+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 67777777 8999999999999999988884 47777665542 2 5678889987
Q ss_pred --ccc--EEEEE-ECCeEEEEEcCC-----CHHHHHHHH
Q 009096 479 --TVP--TFKIY-KNGEKLKEMINP-----SHQFLEDSA 507 (543)
Q Consensus 479 --~~P--t~~~~-~~g~~~~~~~g~-----~~~~~~~~~ 507 (543)
++| +++++ ++|+++.+..|. +..+++..|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 333 66666 599999988875 344555444
No 391
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.94 E-value=7e-05 Score=54.18 Aligned_cols=72 Identities=10% Similarity=0.169 Sum_probs=56.0
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHH---HHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA---KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
+..|..+||+.|...+..|++ .++.|-.+|+++.++.. ...|..++|++++ +|. .+.|+++++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence 457888999999999998866 47888899998776533 3457789999864 453 4569999999998
Q ss_pred HHhcC
Q 009096 507 ANLAP 511 (543)
Q Consensus 507 ~~~~~ 511 (543)
+..+.
T Consensus 73 ~~~~~ 77 (81)
T PRK10329 73 HPAPH 77 (81)
T ss_pred HHhhh
Confidence 87654
No 392
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.94 E-value=3.8e-05 Score=54.46 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=51.5
Q ss_pred eeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc---CCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 431 VHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE---GVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 431 v~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
..|..++|+.|+.....|++ .++.|-.+|+++.+...+.+ |..++|++++ +|+ ..+.|+++++|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 46788999999999999976 36788888998877655555 8889999754 554 35668899888764
No 393
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.93 E-value=4.1e-05 Score=63.77 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=53.1
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEeCcCc---------------------HHHHHHcCCC-----
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEES---------------------LAIAKSEGVR----- 478 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~~---------------------~~~~~~~~v~----- 478 (543)
..+++.|++.||+.|+...|.|.++.+++ .++.++.|..+.. ..+.+.||+.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~ 104 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPW 104 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcH
Confidence 34455557999999999999999999888 4588888876542 3577777874
Q ss_pred ------------------------cccEEEEEE-CCeEEEEEcC
Q 009096 479 ------------------------TVPTFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 479 ------------------------~~Pt~~~~~-~g~~~~~~~g 497 (543)
.+|+++++. +|+++....|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 105 SNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 678777774 7887776655
No 394
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.93 E-value=0.00068 Score=64.71 Aligned_cols=187 Identities=15% Similarity=0.027 Sum_probs=118.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL 246 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 246 (543)
..+..+.+..++.-.+|++++|+. +.++..++.- ......+|..+++++++..... ....
T Consensus 178 AWRERnp~aRIkaA~eALei~pdC-AdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~-----------------lg~s 237 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDC-ADAYILLAEE--EASTIVEAEELLRQAVKAGEAS-----------------LGKS 237 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhh-hHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh-----------------hchh
Confidence 345677788888888888888876 4444443321 1223456666666665432221 1111
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHH
Q 009096 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY--NSILYCNRAICWSK 324 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 324 (543)
...+....+-+.....+.++-.+. -..+|.+..+.|+.++|++.++..++..|. +..++.+|..++..
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~----------KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYA----------KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE 307 (539)
T ss_pred hhhhcccchhhhhhccccchhhhh----------HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence 111111111111111112221111 134799999999999999999999988775 46799999999999
Q ss_pred ccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHc-cC---------------HHHHHHHHHHHHhcCCCChHHH
Q 009096 325 MGLWENSIEDCNVALRI-QPNYTKALLRRAVSNEKL-GR---------------WSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 325 ~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~ 383 (543)
++.|.++...+.+.-++ -|+.+...|..|.+..+. ++ -..|.+.+.+|++.+|.-+...
T Consensus 308 lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 308 LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 99999999999997544 356666666666554331 21 2457789999999999887765
No 395
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.92 E-value=6.1e-05 Score=64.99 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=63.8
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++++++.|| +.||+.|....|.|.++.+++. ++.++.|.+|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3568999999 9999999999999988888773 46666665442 346788999
Q ss_pred CC------cccEEEEE-ECCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 477 VR------TVPTFKIY-KNGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 477 v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
|. ..|+.+++ ++|+++....+ .+.+++.+.|+..
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 45877777 59999887543 1667777777644
No 396
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.91 E-value=2.7e-05 Score=69.27 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEE--------------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHF-------------------------------------------- 460 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~-------------------------------------------- 460 (543)
..+..++.|.-+.||.|+.+.+.+.++.+. ++++
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 356778889999999999999988887542 1221
Q ss_pred EEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 461 ~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+..+++++.++++++||+++||++ +.||+.+ .|+ ++++|+++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 112233456799999999999999 7799765 698 999999999864
No 397
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.90 E-value=2.6e-05 Score=45.87 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.7
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888874
No 398
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.90 E-value=0.00052 Score=56.77 Aligned_cols=93 Identities=22% Similarity=0.141 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCC----------------------hhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYN----------------------SILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
..|......++.+.++..+++++.+.... ..+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 35666777889999999999999874321 24455678888899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
.+|.+..++..+-.++...|+..+|++.|+++...
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987653
No 399
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.90 E-value=0.00014 Score=65.22 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=74.0
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.|| ++||+.|....|.|.++.+++. ++.++.|.+|. +..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 456666666 8999999999999988888773 45555555442 3468899
Q ss_pred cCCC-----cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccCC
Q 009096 475 EGVR-----TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTGE 538 (543)
Q Consensus 475 ~~v~-----~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 538 (543)
|||. ..|++++++ +|+++.... |.+.+++.+.|+.+.-. ...+ ..-|++|. |..+|.-.
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~-~~~g----~~cPanW~~g~~~~~~~ 248 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFA-EKTG----NVCPVNWKQGDQAMKPD 248 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchh-hhcC----CCcCCCCCcCCceecCC
Confidence 9986 579888886 999987653 33888888888754321 1112 12488895 66666543
No 400
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.89 E-value=0.014 Score=56.59 Aligned_cols=300 Identities=15% Similarity=0.072 Sum_probs=154.6
Q ss_pred HhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHH
Q 009096 54 AGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--------PGYNRAHQRLAS 124 (543)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 124 (543)
.+.+..+.|+++. +...+...+ +.+...+..+......++++++....+++...- +......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3567788899998 333333322 234666777777778999999999888876542 222222222223
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh-hhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES-RKIGDWKTVLRETDAAIA--IGVDSSPQLVACKAEA 201 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~a~~ 201 (543)
.+..+.+.+++.......... +..... ....|-.+-... .....++.-+..=.-++. ..+......+...+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~--~~~~~~--l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN--PQDLKS--LLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc--HHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 333445555565554322110 111111 111222222111 111112222221122222 1134446678888999
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH-H--HHHHHHhHHHH
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV-E--IASVLTNVKMV 278 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~--~~~~l~~~~~~ 278 (543)
..+.|+++.|...+.++....+...... ....+..+..+...|+..+|+..++..+....... . ....+.
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~--~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~----- 228 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLL--PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELK----- 228 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCC--cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHh-----
Confidence 9999999999999999888663332110 01223338889999999999999998887221111 0 000000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc------cCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM------GLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
.+................ .....+.++..+|...... ++.++++..|+++++++|+...+|+.+
T Consensus 229 -----~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 229 -----SGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred -----hccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 000000000000000000 0001133444444444444 666667777777777777666666666
Q ss_pred HHHHHHcc-----------------CHHHHHHHHHHHHhcCCC
Q 009096 353 AVSNEKLG-----------------RWSEAVRDYEALRRELPG 378 (543)
Q Consensus 353 a~~~~~~g-----------------~~~~A~~~~~~al~~~p~ 378 (543)
|..+...= -...|+..|-+++...++
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 66554431 124588899999998887
No 401
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.88 E-value=0.00014 Score=63.93 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=75.8
Q ss_pred CCcee-eeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC---------------------------cHHHHHHc
Q 009096 426 PGVSL-VHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE---------------------------SLAIAKSE 475 (543)
Q Consensus 426 ~~~~l-v~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~---------------------------~~~~~~~~ 475 (543)
+++++ +.|+++||+.|....+.|.++..++ .++.++.+.+|. ...+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 34444 5889999999999999999998887 357777776652 23677888
Q ss_pred CCC-------cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-----ccccccC
Q 009096 476 GVR-------TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-----STAVVTG 537 (543)
Q Consensus 476 ~v~-------~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 537 (543)
||. .+|+++++. +|+++.... |.+.+++.+.|+.+-.. .+-+ ...|++|. |..|+..
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~-~~~~----~~~P~~w~~~~~~g~~~~~~ 187 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLV-DKAG----VVTPANWPNNELIGDKVINP 187 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhh-hhcC----CCcCCCCCCCCCCCCceecC
Confidence 874 368777775 998887654 34888888888865321 1111 22588897 6777665
Q ss_pred CCC
Q 009096 538 ESE 540 (543)
Q Consensus 538 ~~~ 540 (543)
...
T Consensus 188 ~~~ 190 (215)
T PRK13191 188 APR 190 (215)
T ss_pred CCC
Confidence 443
No 402
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0025 Score=57.56 Aligned_cols=162 Identities=12% Similarity=-0.028 Sum_probs=123.5
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCC-CCCCChhHHHHHHHHHHHHH
Q 009096 163 RCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKF-EHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~ 241 (543)
.+......|++.+|...+++.++..|.+- .++..--.+++.+|+...-...+++++.. +++.|... .+.+++ +..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl-la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~s-Yv~Gmy--aFg 184 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL-LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYS-YVHGMY--AFG 184 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh-hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHH-HHHHHH--Hhh
Confidence 34455678889999999999999999873 33444467888999999999999999877 66654432 233333 677
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCN 317 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 317 (543)
+...|-|++|.+.-+++++++|.+..+.. ..+.++...+++.++.+...+.-..-... ..-|..
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~H------------a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH 252 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASH------------AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH 252 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHH------------HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence 88999999999999999999999876653 36888999999999999987754332211 223455
Q ss_pred HHHHHHHccCHHHHHHHHHHHHh
Q 009096 318 RAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~ 340 (543)
-+.++...+.|+.|++.|.+-+-
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHH
Confidence 78889999999999999988663
No 403
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.87 E-value=0.0082 Score=61.59 Aligned_cols=309 Identities=13% Similarity=-0.064 Sum_probs=190.1
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC-----CChhH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDP-----GYNRA 118 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 118 (543)
+.-.+.+..-+..+...|..++|+...-.| -+|.- ....-..+.-++..++.. .+...++.-| .++..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~L 417 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRL 417 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchH
Confidence 334667777778888889999998775443 23322 223333344444455433 3333333333 24566
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCC-CCC-hHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC----H
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGH-HPD-PNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS----P 192 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~ 192 (543)
-...+.......++.+|.....++.. -+. .............--.+.+....|+.+.|+...+.++..-|... .
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 67778888889999999888776655 111 11112222233344567777889999999999999998876542 3
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHh----hcCCCcH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRF--ENAVSSAEKAG----LLDYSNV 266 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al----~~~p~~~ 266 (543)
......|.+..-.|++++|..+...+.+...............+..+.++...|+. .+....|...- ...|-+.
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 44566888999999999999999998887666656666666777778999999943 33333333222 2222222
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC--h-hHHhHHHHHHHHccCHHHHHHHHHHHH
Q 009096 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY----DSYN--S-ILYCNRAICWSKMGLWENSIEDCNVAL 339 (543)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al 339 (543)
-.... .+.++..--+++.+..-....++. .|.. . -.++.++.++...|++++|.....+..
T Consensus 578 f~~~~------------r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 578 FLVRI------------RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred hHHHH------------HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 21111 233332222366666555555544 2222 2 233578999999999999999999887
Q ss_pred hhCCCC-H----H--HHHHHHHHHHHccCHHHHHHHHHH
Q 009096 340 RIQPNY-T----K--ALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 340 ~~~p~~-~----~--~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
.+-.+. + . ++.-........|+.++|.....+
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 653222 1 1 122222334567899998888777
No 404
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.87 E-value=0.0022 Score=62.07 Aligned_cols=145 Identities=18% Similarity=0.068 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc----HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSN----VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
..|+..+.+..+.|+++.|...+.++....+.. +.+. ...+..+...|+..+|+..++..+...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~------------~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVF------------LEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchH------------HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456666999999999999999999998765322 2221 236888999999999999999888732
Q ss_pred CC-C--hhHHhHHHHHHHH--ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhcCC
Q 009096 309 SY-N--SILYCNRAICWSK--MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL------GRWSEAVRDYEALRRELP 377 (543)
Q Consensus 309 p~-~--~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p 377 (543)
.. . ......+...... ............ ......++..+|...... +..+++...|.++.+++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 21 1 1111111100000 000000000000 011246777888888777 899999999999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q 009096 378 GDNEVAESLHNAQVALK 394 (543)
Q Consensus 378 ~~~~~~~~l~~~~~~l~ 394 (543)
+...++..++.....+-
T Consensus 290 ~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKLL 306 (352)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99998888777666553
No 405
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.86 E-value=7.7e-05 Score=65.27 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=71.7
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHcCCC
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSEGVR 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~~v~ 478 (543)
.+++.|+++||+.|....+.|.++.+++. ++.++.|.+|. ...+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999988884 47777776553 24688899986
Q ss_pred ----ccc----EEEEE-ECCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-cccccc
Q 009096 479 ----TVP----TFKIY-KNGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVT 536 (543)
Q Consensus 479 ----~~P----t~~~~-~~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 536 (543)
+.| +++++ .+|+++....+ .+.+++.+.|+.+-.. ...+ ...|++|. |..||.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~-~~~~----~~~p~~w~~g~~~~~ 175 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLT-DKHK----VATPANWKPGDDVIV 175 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhH-hhcC----cCcCCCCCCCCceec
Confidence 333 45555 59999877654 3778888888765221 1122 12477784 555554
No 406
>PRK13189 peroxiredoxin; Provisional
Probab=97.86 E-value=0.00014 Score=64.38 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=68.8
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHcCCC
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSEGVR 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~~v~ 478 (543)
.+++.|+++||+.|....+.|.++..++. ++.++.+.+|. ...+++.|||.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 45567899999999999999998888773 46666665442 34678899986
Q ss_pred -------cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCccc
Q 009096 479 -------TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWFS 531 (543)
Q Consensus 479 -------~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (543)
.+|+++++. +|+++.... |.+.+++.+.|+.+..... -+. ..|++|.-
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~-~~~----~~p~~w~~ 178 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDE-KGV----ATPANWPP 178 (222)
T ss_pred ccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhh-cCc----CcCCCCCC
Confidence 468777775 999877654 4478889888886532211 111 24777863
No 407
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.86 E-value=2.3e-05 Score=63.89 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=57.7
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhH-hH--HHHHhhC-CCeEEEEEeCcCcHHHHHHc--------CCCcccEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISP-FV--NLLCVRY-PYVHFFKVDVEESLAIAKSE--------GVRTVPTF 483 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p-~l--~~l~~~~-~~~~~~~~d~~~~~~~~~~~--------~v~~~Pt~ 483 (543)
.+.+..+-..++++++.++.+||+-|+.|.. .| .++++-+ .++.-+++|.++.++|...| |.-|.|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 3556666677999999999999999998875 33 2333333 34777889999999998888 88899987
Q ss_pred EEEE-CCeEEEEEcCCCHH------HHHHHHHh
Q 009096 484 KIYK-NGEKLKEMINPSHQ------FLEDSANL 509 (543)
Q Consensus 484 ~~~~-~g~~~~~~~g~~~~------~~~~~~~~ 509 (543)
+++. +|+++.-.+..+++ .+.++|++
T Consensus 107 vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~ 139 (163)
T PF03190_consen 107 VFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLER 139 (163)
T ss_dssp EEE-TTS-EEEEESS--SS-BTTB--HHHHHHH
T ss_pred EEECCCCCeeeeeeecCCCCCCCCccHHHHHHH
Confidence 7775 99998865444442 45555543
No 408
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.86 E-value=9.9e-05 Score=75.05 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=69.3
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
+..+..|.+++|++|......+++++...|++.+-.+|....++++++|+|.++|++++ ||+.+ ..|. +.+++.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~ 192 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILA 192 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHH
Confidence 34477899999999999999999999999999999999999999999999999999965 77644 4477 8888888
Q ss_pred HHHhc
Q 009096 506 SANLA 510 (543)
Q Consensus 506 ~~~~~ 510 (543)
.+.+.
T Consensus 193 ~~~~~ 197 (517)
T PRK15317 193 KLDTG 197 (517)
T ss_pred HHhcc
Confidence 88764
No 409
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.85 E-value=0.037 Score=54.50 Aligned_cols=318 Identities=14% Similarity=-0.018 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHhCCHHHHHHHhcC
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS-LYFRLGQVENARHHLCF 141 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 141 (543)
..+.+...|...|...|-....|...|..-.++|..+.+.+.|++++.--|.....|..+-. +-...|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34667777888888899999999999999999999999999999999999988888876544 33455666666667776
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------ccChhHHHHHh
Q 009096 142 PGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK------LHQNEDADSCL 215 (543)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~------~~~~~~A~~~~ 215 (543)
|..-...+.. ....|-.........+++..-...|++.++. |......++..=.-+.. +...+++...-
T Consensus 140 A~~~vG~dF~----S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 140 AKSYVGLDFL----SDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHhcccchh----ccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 6551111000 0011111222225677888888888888876 32211111111111111 11122222221
Q ss_pred hcCC-----------------------CCCCCCChhHHHHH-HHHHHHHHHHhhcChHHHHHHHHHHhhc-----CCCcH
Q 009096 216 SNMP-----------------------KFEHYSPPSQVKFL-VWLLKLMFNISELRFENAVSSAEKAGLL-----DYSNV 266 (543)
Q Consensus 216 ~~~~-----------------------~~~~~~~~~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 266 (543)
.... ...+........+. .....-.++...-...+.+-.++..++. .|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 1111 11111111111110 1111122333334444555555555532 23332
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-CCCC
Q 009096 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-QPNY 345 (543)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 345 (543)
.-.. .|..-...-...|+++...-.|++++--.....+.|...+.-....|+.+-|...+.++.++ .|..
T Consensus 295 aql~---------nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 295 AQLK---------NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHH---------HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 2211 12234555678899999999999999888888999999999999999999999999888876 4677
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 346 TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 346 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+..+..-+.+....|++..|...+++..+-.|+...+............
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 7888888899999999999999999999988988777654444444443
No 410
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.83 E-value=8.6e-05 Score=50.46 Aligned_cols=55 Identities=27% Similarity=0.494 Sum_probs=42.8
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
++.|+.+||++|......|++ .++.+..+|++..++ +.+..|..++|++++ ||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 467899999999999998865 357788888887644 333349999999986 7764
No 411
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.83 E-value=0.0014 Score=65.35 Aligned_cols=166 Identities=10% Similarity=-0.089 Sum_probs=120.5
Q ss_pred HhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh--h--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 128 RLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES--R--KIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
-.|+-+.++..+.++.+..+-........+..++.....+ . ...+.+.|.+.+....+..|+. ..+....|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-ALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 4588888888888877633332222222222222222212 1 4567888999999999999986 677777899999
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|+.++|++.|++++..... ..+.....++.++.++..+.+|++|..+|.+..+.+.-....+.+ .
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y-----------~ 345 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY-----------L 345 (468)
T ss_pred HhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH-----------H
Confidence 999999999999998854333 333444567778999999999999999999999877665555433 3
Q ss_pred HHHHHHhcCCH-------HHHHHHHHHHhcc
Q 009096 284 RGNNLFSSRRY-------SEACSAYGEGLKY 307 (543)
Q Consensus 284 ~g~~~~~~~~~-------~~A~~~~~~al~~ 307 (543)
.|.++...++. ++|.++|.++-..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 68899999988 8888888777554
No 412
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.82 E-value=0.0026 Score=63.30 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=134.9
Q ss_pred hHHhHHHHHHHcCCHHHHHHHHHH------HHhcC----CCC-hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHh
Q 009096 84 YRSNRAATLTALGRLTEAVSDCEE------AVRLD----PGY-NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELL 152 (543)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~----p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 152 (543)
.|-.-|.++.+..++++|+++|++ ++++. |.. ...-...|.-+...|+++.|+.+|-++-
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------- 733 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------- 733 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------
Confidence 344456666677788888888764 33332 322 1222344667788899999998885542
Q ss_pred HHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH
Q 009096 153 KLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF 232 (543)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 232 (543)
..............|.+|+..++........ ...|-..+.-|...|+|+.|.+.|.++-... + .
T Consensus 734 ------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~~~-d-------a 797 (1636)
T KOG3616|consen 734 ------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADLFK-D-------A 797 (1636)
T ss_pred ------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcchhH-H-------H
Confidence 1233334455677888888888776655322 3445667889999999999999988763211 0 1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
...|-+.|+++.|...-+++.. |+..... +...+.-+-+.|+|.+|..+|-..- .|+.
T Consensus 798 ------i~my~k~~kw~da~kla~e~~~--~e~t~~~-----------yiakaedldehgkf~eaeqlyiti~--~p~~- 855 (1636)
T KOG3616|consen 798 ------IDMYGKAGKWEDAFKLAEECHG--PEATISL-----------YIAKAEDLDEHGKFAEAEQLYITIG--EPDK- 855 (1636)
T ss_pred ------HHHHhccccHHHHHHHHHHhcC--chhHHHH-----------HHHhHHhHHhhcchhhhhheeEEcc--CchH-
Confidence 4567888999999888877743 4433222 1235666677777777776662211 1221
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-TKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
-...|-+.|.++.-++...+ ..|++ .+.+..+|.-+...|+...|...|-++
T Consensus 856 -----aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 11223334444444333322 22332 244455555555555555555544433
No 413
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.82 E-value=1e-05 Score=72.77 Aligned_cols=97 Identities=26% Similarity=0.399 Sum_probs=90.4
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
+......+...+..|.+++|++.|..++.++|.....+..++.+++++++...|+..+..+++++|+...-|-..+....
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 33455677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCCCC
Q 009096 128 RLGQVENARHHLCFPGH 144 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~ 144 (543)
.+|++++|...+..+.+
T Consensus 194 llg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACK 210 (377)
T ss_pred HhhchHHHHHHHHHHHh
Confidence 99999999999988876
No 414
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00061 Score=63.01 Aligned_cols=137 Identities=14% Similarity=-0.022 Sum_probs=105.6
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA-LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
+|........+.+..+.|...|.+|++..+.....|...|.+-+. .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566777778888889999999999997766678899999999777 5666669999999999999999999999999999
Q ss_pred hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 129 LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
.|+.+.|...|++++........ .-..|......-...|+.+......+++.+..|+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~----~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQ----SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHH----CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCchhH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999983222210 01123334444566789999999999998887764
No 415
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.80 E-value=0.00014 Score=54.71 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=63.7
Q ss_pred hhhhhhccCCCCceeeeeeCC--CCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEA--SSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~--~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.++..+..++..++.|..+ .|+-+..+.=++-++.+.+++ +..+-++-+....|+.+|||...|+++++++|+.+
T Consensus 16 ~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~l 95 (107)
T PF07449_consen 16 ADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYL 95 (107)
T ss_dssp CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEE
T ss_pred hhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEE
Confidence 455566666666666666553 345555555688999999988 67777777788899999999999999999999999
Q ss_pred EEEcCC
Q 009096 493 KEMINP 498 (543)
Q Consensus 493 ~~~~g~ 498 (543)
..+.|.
T Consensus 96 G~i~gi 101 (107)
T PF07449_consen 96 GAIEGI 101 (107)
T ss_dssp EEEESS
T ss_pred EEecCe
Confidence 999886
No 416
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.75 E-value=0.0035 Score=64.01 Aligned_cols=265 Identities=11% Similarity=-0.035 Sum_probs=171.7
Q ss_pred cCHHHHHHHhhHHHhc-----CCHHHHHHHHHHHHhc-----CCcchhhHHhHHHHHHHcC-----CHHHHHHHHHHHHh
Q 009096 46 VDAEEVKRAGNEMYRK-----GNFVEALKLYDKAISM-----SPENAAYRSNRAATLTALG-----RLTEAVSDCEEAVR 110 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 110 (543)
.+..+...+|.+++.- .+.+.|+.+|+.+... .-.++.+.+.+|.+|.... +++.|+.+|.++.+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4666777888887754 6899999999999771 1125678899999999853 78889999999987
Q ss_pred cCCCChhHHHHHHHHHHHhC---CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh----hhcCCHHHHHHHHHHH
Q 009096 111 LDPGYNRAHQRLASLYFRLG---QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES----RKIGDWKTVLRETDAA 183 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~ 183 (543)
.. ++.+.+.+|.++..-. ++..|..+|..|.+..... +.+.++.++ ....+...|..++.++
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---------A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---------AIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---------HHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 64 5778889999988766 5789999998887644333 234444443 3456889999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc-cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHH
Q 009096 184 IAIGVDSSPQLVACKAEAHLKL-HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKA 258 (543)
Q Consensus 184 l~~~p~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a 258 (543)
.+.++ +.+...++..+..- +.++.+...+.......-......... +......... ..+...+...+.++
T Consensus 391 A~~g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~a 465 (552)
T KOG1550|consen 391 AEKGN---PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAY--LLDQSEEDLFSRGVISTLERAFSLYSRA 465 (552)
T ss_pred HHccC---hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHH--HHHhccccccccccccchhHHHHHHHHH
Confidence 99873 33333334433322 666666555544433322221111000 0000000111 11334455555554
Q ss_pred hhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHH
Q 009096 259 GLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS----RRYSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWEN 330 (543)
Q Consensus 259 l~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 330 (543)
......... ..+|.+|+.. .+++.|...|.++.... +...+++|.++.. .. ...
T Consensus 466 ~~~g~~~a~--------------~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 466 AAQGNADAI--------------LKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHL 527 (552)
T ss_pred HhccCHHHH--------------hhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHH
Confidence 333222221 2367776554 46999999999998776 8999999999875 23 789
Q ss_pred HHHHHHHHHhhCCC
Q 009096 331 SIEDCNVALRIQPN 344 (543)
Q Consensus 331 A~~~~~~al~~~p~ 344 (543)
|.++|.++.+.+..
T Consensus 528 a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 528 AKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHhcCch
Confidence 99999999887654
No 417
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.75 E-value=0.0055 Score=57.81 Aligned_cols=207 Identities=17% Similarity=0.097 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHH---hCCHH
Q 009096 63 NFVEALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVRL----DPGYNRAHQRLASLYFR---LGQVE 133 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~ 133 (543)
+..+++.-.++-+. +|. +++...++=.+|....+|+.-++..+..-.+ -++.+...+.+|.++.+ .|+.+
T Consensus 121 ~l~~~L~~i~~rLd-~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 121 ELAKELRRIRQRLD-DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHhhC-CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 44455555555444 233 3556666667788888888777777766555 34456667777777777 78888
Q ss_pred HHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 134 NARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 134 ~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
+|+..+..++. ..+++.+--...+..-.-...........++|+..|.++.+.+|+..+ -.+++.++...|...+
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~--GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS--GINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc--hHHHHHHHHHcCCccc
Confidence 88888777444 333443322222211111111122344589999999999999876532 3345666666665333
Q ss_pred HHHHhhcCC--------CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 211 ADSCLSNMP--------KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 211 A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
....++++. +..... ....+...-..+.+..-.|++++|+..++++++..|........+.+
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~--~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLE--KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred chHHHHHHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 222111111 111111 11111222233667777999999999999999999887765544433
No 418
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.71 E-value=6.2e-05 Score=65.76 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=55.7
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeE---------------------------------------------E
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVH---------------------------------------------F 460 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~---------------------------------------------~ 460 (543)
.+..++.|..+.|++|+.+.+.+.+.. .++. .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~---~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNA---DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhcc---CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 568888999999999999998887511 1111 2
Q ss_pred EEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHH
Q 009096 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 461 ~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 507 (543)
+..+++++..+++++||.++||++ +.||+. +.|+ ++++|.++|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 223334456799999999999997 888976 4688 888888764
No 419
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.70 E-value=0.00016 Score=59.40 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------cHHHHHHcCCCc
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------SLAIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------~~~~~~~~~v~~ 479 (543)
.++++++.|| +.||+.|....|.+.++..++ .++.|+.|..+. ...+++.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4678999999 689999999999999998876 357777666542 246778889887
Q ss_pred cc---------EEEEEE-CCeEEEEEcCC
Q 009096 480 VP---------TFKIYK-NGEKLKEMINP 498 (543)
Q Consensus 480 ~P---------t~~~~~-~g~~~~~~~g~ 498 (543)
.| +++++. +|+++.+..|.
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecC
Confidence 76 666664 79999998887
No 420
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.65 E-value=0.00037 Score=58.30 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFK 462 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~ 462 (543)
.+..++.|+.++||+|+.+.|.+.++..+++++.+..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~ 41 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVF 41 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEE
Confidence 4677889999999999999999999887776654433
No 421
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.63 E-value=0.00018 Score=61.20 Aligned_cols=41 Identities=5% Similarity=-0.053 Sum_probs=34.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~ 466 (543)
.+++++|.|||+||+.|.. .|.|+++.++|. ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3589999999999999975 789999999985 4888888764
No 422
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.63 E-value=0.00014 Score=60.00 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=35.6
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhCC-----CeEEEEEeCc
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRYP-----YVHFFKVDVE 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~~-----~~~~~~~d~~ 466 (543)
.++++++.||++||++ |....|.+.++.+++. ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4678999999999998 9999999999988884 3888888654
No 423
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.63 E-value=0.00028 Score=51.06 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc---HHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES---LAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQF 502 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 502 (543)
...-++.|..+||+.|......|++. ++.|..+|+++. ..+....|..++|.++ .||+.+. |. ++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ig---G~--~~ 73 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLIG---GS--DE 73 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEEc---CH--HH
Confidence 34457789999999999999998753 566677787755 4455567899999985 4787533 43 45
Q ss_pred HHHHH
Q 009096 503 LEDSA 507 (543)
Q Consensus 503 ~~~~~ 507 (543)
|.++|
T Consensus 74 l~~~l 78 (79)
T TIGR02190 74 LEAYL 78 (79)
T ss_pred HHHHh
Confidence 55443
No 424
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.61 E-value=0.00011 Score=43.11 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566666666666666666666666666653
No 425
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.0095 Score=49.82 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-TKALLRRAVSNE 357 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 357 (543)
..++..+...+++++|+..++.++....+. ..+-.+||.+..++|.+++|+..+...... .. +..--.+|.++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--SWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--cHHHHHHHHhhhHHH
Confidence 468999999999999999999998765443 456778999999999999999988764322 21 233567899999
Q ss_pred HccCHHHHHHHHHHHHhcCCCC
Q 009096 358 KLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~ 379 (543)
..|+.++|+..|+++++.+++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 9999999999999999998443
No 426
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.12 Score=53.97 Aligned_cols=304 Identities=13% Similarity=0.059 Sum_probs=157.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch--hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA--AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRL 122 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (543)
..+|+....-..+++..+-..+-++.+++++-.+.-.. ..+.++-..-.-.-+.....++..+.-..+.. ..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCch------hH
Confidence 34666666667777888888888888888764322111 11111111111223444455555544332221 24
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.+....+-|++|...|.+.-. +.... . ......+..+.|.+..++. +.+.+|..+|.+-
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~--n~~A~------~------VLie~i~~ldRA~efAe~~------n~p~vWsqlakAQ 1114 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM--NVSAI------Q------VLIENIGSLDRAYEFAERC------NEPAVWSQLAKAQ 1114 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc--cHHHH------H------HHHHHhhhHHHHHHHHHhh------CChHHHHHHHHHH
Confidence 5556666677777777755321 00000 0 0011223333333333222 1256677777777
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc---HHHHHHHHh---HH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN---VEIASVLTN---VK 276 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~---~~ 276 (543)
++.|...+|++.|-++ +++..+... ..+....|.|++-+.++..+-+...+. ......+.. +.
T Consensus 1115 L~~~~v~dAieSyika-----dDps~y~eV------i~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKA-----DDPSNYLEV------IDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred HhcCchHHHHHHHHhc-----CCcHHHHHH------HHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH
Confidence 7777777777766655 222222222 445556666666666665554332221 111111111 00
Q ss_pred HHH---------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC----
Q 009096 277 MVV---------RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP---- 343 (543)
Q Consensus 277 ~~~---------~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 343 (543)
..+ .....|.-++..|.|+.|.-+|.. ..-|..|+..+..+|+|+.|....++|-....
T Consensus 1184 elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1184 ELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred HHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 000 023457777777777777776653 33466677777778888887777776543210
Q ss_pred ---------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 344 ---------------------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 344 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
-+.+-+-.+...|...|-+++-+..++.++-+...+-.....|+.+....
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 01233445556677777788888888777777665555555555444433
No 427
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.58 E-value=0.00045 Score=70.24 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=68.7
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
.-+..|.++.|++|......+.+++...|++.+-.+|....++++++|+|.++|++++ ||+.+ ..|. +.+++.+.
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~ 194 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLEK 194 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999976 77644 4577 88888888
Q ss_pred HHhc
Q 009096 507 ANLA 510 (543)
Q Consensus 507 ~~~~ 510 (543)
+...
T Consensus 195 l~~~ 198 (515)
T TIGR03140 195 LEET 198 (515)
T ss_pred Hhhc
Confidence 7765
No 428
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.57 E-value=0.00057 Score=44.22 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+.++.+|..+.++|+|++|..+.+.++++.|+|.++......+...+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 457788888999999999999999999999999888877666655554
No 429
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.56 E-value=0.0013 Score=63.67 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
|......|+...|+.++..++...|....+. +.++++++.+-|-.-.|-..+.+++.+....+..++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~-----------~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVP-----------LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhccc-----------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 4444556777888888888888877765543 24589999999999999999999999998889999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
|..+..+.+.+.|++.|+.|++++|+++..-..+-.+-+
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999877655554444
No 430
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.56 E-value=0.00024 Score=51.99 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=43.6
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----HHHHHHcCCCcccEEEEEECCeEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----LAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
++.|.++|||.|..+.+.|+++.. ...++.++.+.. ..+.+..|+.++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 467889999999999999999765 345666666544 245566789999996 5678653
No 431
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.027 Score=58.58 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhc
Q 009096 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLC 140 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (543)
-++.+.|.++-++. +.+..|..+|.+....|...+|++.|-++ +++..|.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35555555554443 34566666666666666666666666553 445556666666666666666666655
Q ss_pred CCCC
Q 009096 141 FPGH 144 (543)
Q Consensus 141 ~a~~ 144 (543)
-+.+
T Consensus 1158 MaRk 1161 (1666)
T KOG0985|consen 1158 MARK 1161 (1666)
T ss_pred HHHH
Confidence 4433
No 432
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0036 Score=54.60 Aligned_cols=168 Identities=8% Similarity=-0.066 Sum_probs=128.1
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
....|+.....++.++|.+...+ ..+-.++..+ .+..+-++++.+.++.+|.+..+|.. +-
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW------~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH------------Rr 119 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVW------QYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH------------RR 119 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHH------HHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH------------HH
Confidence 34567777888888888884433 3333344333 45778889999999999999998854 34
Q ss_pred HHHHhcCCHH-HHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-c----
Q 009096 286 NNLFSSRRYS-EACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK-L---- 359 (543)
Q Consensus 286 ~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~---- 359 (543)
.+....|+.. .-++..+.++..+..+..+|..+-.+....+.++.-+.+..+.++.+-.|-.+|..+-.+... .
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence 4556667777 788999999999999999999999999999999999999999999887777777655433322 1
Q ss_pred -cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 360 -GRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 360 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
-..+.-+.+..+.+.+.|+|..+|..|.-++..
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 134556788889999999999999988766543
No 433
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.51 E-value=0.0065 Score=50.16 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=71.8
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcH-----H-HHHH----HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNV-----E-IASV----LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~-~~~~----l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
|......++.+.++..+++++.+...+. . .|.. ...-.....+..++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 5555666777888888888875543221 0 1110 0111223335567888999999999999999999999
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
|.+..++..+..+|...|+..+|+..|++...
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 434
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.49 E-value=0.00018 Score=42.17 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=26.5
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56788888888888888888888888888875
No 435
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.025 Score=50.74 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=74.6
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHH
Q 009096 85 RSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRC 164 (543)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (543)
-+.-+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-.......+.. +...+...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~---l~a~i~ll 213 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG---LQAQIELL 213 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH---HHHHHHHH
Confidence 334444555556666666666666666666666666666666666666666655544322111111111 11111111
Q ss_pred HhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCC
Q 009096 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYS 225 (543)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 225 (543)
......++. ..+.+.+..+|++ ....+.++..+...|+.++|.+.+-.+++.+...
T Consensus 214 ~qaa~~~~~----~~l~~~~aadPdd-~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 214 EQAAATPEI----QDLQRRLAADPDD-VEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHhcCCCH----HHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 111112221 2335556677877 6778888999999999999999988887765544
No 436
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.47 E-value=0.0009 Score=58.45 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=72.5
Q ss_pred CCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.||. .||+.|....+.+.++.+++. ++.++.|.+|. ...+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 5688889995 889999998888998888885 57777776652 2358889
Q ss_pred cCCC------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccC
Q 009096 475 EGVR------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTG 537 (543)
Q Consensus 475 ~~v~------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 537 (543)
||+. .+|+.+++. +|+++....+ .+.+++.+.|+....... . ....|..|. |..|++.
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~----~-~~~cp~~w~~g~~~~~~ 186 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEK----H-GEVCPANWKKGDPTMKP 186 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHh----c-CCEeCCCCCcCCccccC
Confidence 9986 357777665 9998877655 356666666664432221 1 122477787 5666553
No 437
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0004 Score=52.10 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=50.3
Q ss_pred CCCCceeeeeeC--------CCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcH-------HHHHHcCC-CcccEEEEE
Q 009096 424 SSPGVSLVHFKE--------ASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESL-------AIAKSEGV-RTVPTFKIY 486 (543)
Q Consensus 424 ~~~~~~lv~f~~--------~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~-------~~~~~~~v-~~~Pt~~~~ 486 (543)
.+++.+.+.|.+ +|||.|....|.+.+.-+..|. +.|+.+++..-+ ..-...++ .++||++=+
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw 102 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW 102 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence 345557777875 6999999999999988886664 999999986432 34455666 899999999
Q ss_pred EC
Q 009096 487 KN 488 (543)
Q Consensus 487 ~~ 488 (543)
++
T Consensus 103 ~~ 104 (128)
T KOG3425|consen 103 KR 104 (128)
T ss_pred cC
Confidence 85
No 438
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.44 E-value=0.00057 Score=61.72 Aligned_cols=83 Identities=10% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEe----------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD---------------------------------------- 464 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d---------------------------------------- 464 (543)
..+.+++.|.-+.||.|+.+.+.+..+.+. .++++..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 345778889999999999998887765543 222221111
Q ss_pred ----------CcCcHHHHHHcCCCcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHh
Q 009096 465 ----------VEESLAIAKSEGVRTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 465 ----------~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
++++..+++++||+++||+++-. +| .+..+.|+ ++++|.+++..
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhCC
Confidence 01134588899999999999986 45 44567799 89999988753
No 439
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0072 Score=50.50 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
-..+|..+...|++++|+..++.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~ 117 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALA 117 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 34556666666677777766666654
No 440
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.37 E-value=0.00043 Score=50.23 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=58.1
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC--eEEEEEcCC-CHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG--EKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g--~~~~~~~g~-~~~~~~~~ 506 (543)
++.|..+.|+-|..+...+..+..+.+ +.+-.+|+++++.+..+|+. .+|.+.+-..+ .......+. +.+++.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 567889999999999999998766654 89999999999999999996 79985554311 112333356 99999998
Q ss_pred HH
Q 009096 507 AN 508 (543)
Q Consensus 507 ~~ 508 (543)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 441
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.37 E-value=0.00061 Score=48.23 Aligned_cols=57 Identities=25% Similarity=0.457 Sum_probs=42.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|.++||++|+.+.+.|.+.. +.|..+|++...+ +.+..+..++|++ |.||+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 46788999999999999998763 6777888887654 3444577788877 45887655
No 442
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.35 E-value=0.0014 Score=55.38 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=61.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC--CC-eEEEEEeCcCc---------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY--PY-VHFFKVDVEES--------------------------------- 468 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~-~~~~~~d~~~~--------------------------------- 468 (543)
..+++++.|+...||+|..+.+.+.++.+++ ++ +.|...++-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3567888999999999999999999998888 44 77776655210
Q ss_pred -----------------------------------HHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 469 -----------------------------------LAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 469 -----------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
...+.+.||.++||+++ ||+.+ .|. +.+++.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 13456669999999998 99875 566 99999999975
No 443
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.34 E-value=0.0022 Score=55.43 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=74.9
Q ss_pred hhhhhhhccCCCCc-eeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCC--cccEEEEEE--C
Q 009096 415 SLEKFKAAISSPGV-SLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVR--TVPTFKIYK--N 488 (543)
Q Consensus 415 ~~~~~~~~i~~~~~-~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~--~~Pt~~~~~--~ 488 (543)
+...+......+.+ +++.|...-......+...+..++.++.+ +.|+.+|++..+.++..+||. .+|+++++. +
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~ 162 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNK 162 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTT
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCC
Confidence 34566666666655 77777666667778888889999999987 999999999999999999998 899999998 5
Q ss_pred CeEEEEEcCC-CHHHHHHHHHh
Q 009096 489 GEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
|+......|. +++.|.+||+.
T Consensus 163 ~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 163 GKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEE--SSCGCHHHHHHHHHH
T ss_pred CcEEcCCCCCCCHHHHHHHhcC
Confidence 5543334677 99999999863
No 444
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.34 E-value=0.057 Score=47.58 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=146.9
Q ss_pred cCCHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 61 KGNFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
..+.++|+..|++.+++.+.-. .++-.+..+++.+++|++-+..|++.+..- .-|. ..+-.++++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI--------kSAV---TrNySEKsI 108 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI--------KSAV---TRNYSEKSI 108 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--------HHHH---hccccHHHH
Confidence 4488889999999988877643 456667778888888888888888776421 1110 111111111
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKI----GDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD 212 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 212 (543)
... +......... .-|+..+..++.+-.. ...-..-..+|.+|+..++|.+-.
T Consensus 109 N~I---------------------lDyiStS~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~ 165 (440)
T KOG1464|consen 109 NSI---------------------LDYISTSKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQ 165 (440)
T ss_pred HHH---------------------HHHHhhhhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHH
Confidence 111 0000011111 1122222222222111 000111224788999999888777
Q ss_pred HHhhcCCCCCCC-----C-ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHHHHH
Q 009096 213 SCLSNMPKFEHY-----S-PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 213 ~~~~~~~~~~~~-----~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~ 284 (543)
+.+++.-..... + ..-...+..+....++|-..++-.+-...|++++.+... ++.+......+ -
T Consensus 166 KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIREC--------G 237 (440)
T KOG1464|consen 166 KILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIREC--------G 237 (440)
T ss_pred HHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHc--------C
Confidence 766654332211 1 111122333444467788888888888889999866543 33333222221 4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC-----hh--HHhHHHHHHHHccC----HHHHHHHHHHHHhhCCCCHHH--HHH
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYDSYN-----SI--LYCNRAICWSKMGL----WENSIEDCNVALRIQPNYTKA--LLR 351 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~--~~~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~--~~~ 351 (543)
|..+.+.|+|++|-..|-+|.+..... .. -|.-||..+.+.|= -++|.. ..++|+. ..+
T Consensus 238 GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP--------yKNdPEIlAMTn 309 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP--------YKNDPEILAMTN 309 (440)
T ss_pred CccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC--------CCCCHHHHHHHH
Confidence 677888999999999998888764332 22 23335555555441 111111 1234443 445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHH
Q 009096 352 RAVSNEKLGRWSEAVRDYEALRRELP----GDNEVAESLHNAQVAL 393 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~l 393 (543)
+..+|.. ++ +..|++.++.+. ++|.++..+..+...+
T Consensus 310 lv~aYQ~-Nd----I~eFE~Il~~~~~~IM~DpFIReh~EdLl~ni 350 (440)
T KOG1464|consen 310 LVAAYQN-ND----IIEFERILKSNRSNIMDDPFIREHIEDLLRNI 350 (440)
T ss_pred HHHHHhc-cc----HHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 5555543 22 344666666554 4677776666555444
No 445
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.34 E-value=0.00096 Score=60.43 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=70.6
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccc-----hhHhHHHHHhhC---CCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEE-----ISPFVNLLCVRY---PYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~-----~~p~l~~l~~~~---~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+..+|.+++..-...++.|+.+--..--. +...+-+|+++. .++.|..||..+...+++++|+...+++.+
T Consensus 39 LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyV 118 (383)
T PF01216_consen 39 LNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYV 118 (383)
T ss_dssp E-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEE
T ss_pred cchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEE
Confidence 355778888888888888888876332222 112233444433 569999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+.+..- |. +++.+.+||-.++..+
T Consensus 119 fkd~~~IEyd-G~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 119 FKDGEVIEYD-GERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp EETTEEEEE--S--SHHHHHHHHHHHHSSS
T ss_pred EECCcEEEec-CccCHHHHHHHHHHhcccc
Confidence 9999887765 87 9999999998776544
No 446
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.31 E-value=0.00047 Score=52.17 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=40.0
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-------HHHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-------AIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-------~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|..+|||.|..+...|++. ++.|..+|++..+ .+....|..++|.+ |.+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEc
Confidence 6678999999999999988875 3444556665442 24444578899997 56786543
No 447
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.30 E-value=0.00054 Score=39.76 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666677777777777777777777666665
No 448
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.27 E-value=0.0087 Score=56.59 Aligned_cols=151 Identities=12% Similarity=-0.016 Sum_probs=110.9
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCC------------HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHH
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGN------------FVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 104 (543)
+++.+..+|.|.+.|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556788899999999998876544322 46778899999999999999999988898999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHhcCCCC-------CC----ChHHHhHHHHHHHHHHHHHhhhhc
Q 009096 105 CEEAVRLDPGYNRAHQRLASLYFR---LGQVENARHHLCFPGH-------HP----DPNELLKLQSFEKHLNRCAESRKI 170 (543)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~ 170 (543)
+++++..+|++...|...-..... .-.++.....|.++++ .. ..........+......+......
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 999999999999888765444333 2345666666665554 10 011112333445566677777788
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009096 171 GDWKTVLRETDAAIAIG 187 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~ 187 (543)
|..+.|+..++..++.+
T Consensus 168 G~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 168 GYTERAVALWQALLEFN 184 (321)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 88888888888888775
No 449
>PRK10941 hypothetical protein; Provisional
Probab=97.26 E-value=0.0038 Score=56.62 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=62.3
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
....++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4566778888888999999999999999999988888888999999999999999999999999888887633
No 450
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.23 E-value=0.00098 Score=48.27 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=40.7
Q ss_pred eeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEE
Q 009096 431 VHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 431 v~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.|+.+||+.|......|++. ++.+..+|++..++ +.+..|..++|++ |.+|+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 568889999999999999864 46666677776654 3444588899997 4577643
No 451
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0099 Score=51.96 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=109.8
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW 322 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 322 (543)
.+...-..|+..-+.++.++|.+..+|.....+ .-....+..+-++++.+.++-+|.+..+|..+-.+.
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i-----------L~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv 122 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVI-----------LRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV 122 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 344455678889999999999999998654332 122233477788999999999999999999999999
Q ss_pred HHccCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 323 SKMGLWE-NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 323 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
...|++. .-++..+.++..+..+..+|..+-.+....+.++.-+.+....++.+--|-.+|.
T Consensus 123 e~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred HHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 9999988 8899999999999999999999999999999999999999999998776655543
No 452
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.21 E-value=0.0039 Score=49.86 Aligned_cols=105 Identities=8% Similarity=0.132 Sum_probs=76.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCC--Cc-cc-cchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCC--ccc
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEAS--SE-KC-EEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVR--TVP 481 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~--c~-~c-~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~--~~P 481 (543)
+.++++.+.+++.....+.-++.|.-.- |. .+ ..+...+.++++++.+ +.|+.+|.+....+.+.|||. .+|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 5566777777776655666666664321 11 12 3456788999999964 899999999999999999996 499
Q ss_pred EEEEEECCeEEEE-EcCC-CHHHHHHHHHhcCCCC
Q 009096 482 TFKIYKNGEKLKE-MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 482 t~~~~~~g~~~~~-~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+++++...+.... ..|. +.+.|.+|++.++...
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred EEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 9999974332333 5576 9999999999987654
No 453
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.20 E-value=0.0026 Score=52.63 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=76.6
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
|.+..++..+...++... +-.|+|..|...-+.|.-+...|+.++.+||.++|+++-.+..-. .|-=...||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIp---NYPe~nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIP---NYPESNLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccC---CCcccCCCeEEE
Confidence 557777777777666533 458889999999999999999999999999999999986543211 233447899999
Q ss_pred EECCeEEEEEc------CC--CHHHHHHHHHhc
Q 009096 486 YKNGEKLKEMI------NP--SHQFLEDSANLA 510 (543)
Q Consensus 486 ~~~g~~~~~~~------g~--~~~~~~~~~~~~ 510 (543)
|..|.+...++ |. +++++..++-+.
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 99997765544 34 789999888764
No 454
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.18 E-value=0.022 Score=43.24 Aligned_cols=92 Identities=18% Similarity=0.335 Sum_probs=69.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccC---CC---------ChhHHhHHHHHHHHccCHHHHHHHHHHHHh-------hCCC
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYD---SY---------NSILYCNRAICWSKMGLWENSIEDCNVALR-------IQPN 344 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~ 344 (543)
.|.-....|-|++|...++++++.. |. ++-.+..|+.++..+|+|++++..-.+++. ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 4556677899999999999998753 22 245677799999999999988887777774 4555
Q ss_pred CH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 345 YT----KALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 345 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
.. .+.+.+|..+..+|+.++|+..|+++-++
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44 45578999999999999999999998765
No 455
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.17 E-value=0.0044 Score=51.80 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=81.4
Q ss_pred CCeEEeehhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+.++.+.+.|.+.+... -.++|..|.+.-.-|..+...+.-|+++||-++|+++-..-- ...++|...++||++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSLNVLPTLL 216 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcccCCceEE
Confidence 3467788889999988653 366778899999999999999999999999999999975433 457899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhc
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 510 (543)
+|++|+.+.-++.. ..-++..||+.+
T Consensus 217 iYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 217 IYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999988755432 445566666654
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.14 E-value=0.0019 Score=57.50 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+.+.-..+.|+.++|..+|+.|+.+.|++++++...|......++.-+|-.+|-+++.++|.+.+++.++++..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 35666778999999999999999999999999999999999999999999999999999999999998887653
No 457
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.12 E-value=0.22 Score=46.10 Aligned_cols=122 Identities=19% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----Ccc----hhhHHhHHHHHHHcC-CHHHHHHHHHHHHhc----CC---C-------
Q 009096 58 MYRKGNFVEALKLYDKAISMS----PEN----AAYRSNRAATLTALG-RLTEAVSDCEEAVRL----DP---G------- 114 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p---~------- 114 (543)
...+|+++.|..++.|+-... |+. ...+++.|......+ +++.|...++++.++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356889999999998886543 433 356778888888888 999999999988876 21 1
Q ss_pred ChhHHHHHHHHHHHhCCHHHH---HHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 115 YNRAHQRLASLYFRLGQVENA---RHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A---~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
...++..++.+|...+.++.. ...++.+.. .+++... +.-.-....+.++.+.+.+.+.+++..-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~--------~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV--------FLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH--------HHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 124567778888877766543 333333322 2222211 1112222223677788888888777754
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0069 Score=57.92 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR-WSEAVRDYEALR 373 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 373 (543)
..-...|+.+....+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+.-+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3446788999999999999999999888888889999999999999999999999999988887776 999999999999
Q ss_pred hcCCCChHHHHHHHHHHHH
Q 009096 374 RELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 374 ~~~p~~~~~~~~l~~~~~~ 392 (543)
+.+|++|.+|....+....
T Consensus 168 R~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred hcCCCChHHHHHHHHHHHH
Confidence 9999999999877765443
No 459
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.11 E-value=0.0028 Score=44.82 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=46.5
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH---HHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA---IAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
++.|..+||+.|......|++. ++.+..+|++.... +....|..++|.+ |.||+.+. | .++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig---g--~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG---G--SDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe---C--HHHHHHH
Confidence 5678899999999999888863 56677777776542 3344589999997 56787543 3 3456555
Q ss_pred H
Q 009096 507 A 507 (543)
Q Consensus 507 ~ 507 (543)
+
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 460
>PHA03050 glutaredoxin; Provisional
Probab=97.09 E-value=0.0024 Score=49.04 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=43.0
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-Cc----HHHHHHcCCCcccEEEEEECCeEEE
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ES----LAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~----~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
-++.|..+|||.|......|++..-+++.+..+.+|-. .. ..+.+.-|-.++|++ |.||+.+.
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iG 81 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIG 81 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEe
Confidence 36779999999999999999887554444444444421 12 345555688899998 55787543
No 461
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.08 E-value=0.17 Score=49.22 Aligned_cols=191 Identities=12% Similarity=-0.000 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc---ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH---QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
-+++..+|++++.........+++.++..-...- .++.....+++++.....++.. .++..-..-.+..-..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-----v~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-----VYCQYMNFIRRAEGLK 383 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-----ehhHHHHHHHHhhhHH
Confidence 4556666777665433222333333332222211 2555566666666554443221 1222233344455567
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHH
Q 009096 250 NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 329 (543)
.|...|.++-+.......++..- .-.-|...++.+-|...|+-.++..++++..-......+..+++-.
T Consensus 384 aaR~iF~kaR~~~r~~hhVfVa~-----------A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTRHHVFVAA-----------ALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHHHHHHHhhccCCcchhhHHH-----------HHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcch
Confidence 77888888765433322222110 1223667899999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHhh--CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 330 NSIEDCNVALRI--QPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 330 ~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
.|...|++++.. .|+ ..+.|-..-..-..-|+...+++.=++-....|.+
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 999999999987 443 33677777777778899988888887777777743
No 462
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.08 E-value=0.29 Score=46.61 Aligned_cols=330 Identities=10% Similarity=0.003 Sum_probs=178.8
Q ss_pred CCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH------
Q 009096 36 NNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV------ 109 (543)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al------ 109 (543)
.++..++.+|.+.-.|+.+...+-.+|.+++-.+.|++...-.|--+.+|...-.--...+++......|.+++
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 35567889999999999999999999999999999999988877665555432222222233333333333322
Q ss_pred ------------------------------------hcCCCChhHHHHHHHHHH---------HhCCHHHHHHHhcCCCC
Q 009096 110 ------------------------------------RLDPGYNRAHQRLASLYF---------RLGQVENARHHLCFPGH 144 (543)
Q Consensus 110 ------------------------------------~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~ 144 (543)
-.+|.....|...+..+. .+.+.+.-...|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 234555555555544432 22334455566777776
Q ss_pred CC-ChH--HHhHHHHHHHHHHHHHhh----hhcCCHHHHHHH--------------------------------------
Q 009096 145 HP-DPN--ELLKLQSFEKHLNRCAES----RKIGDWKTVLRE-------------------------------------- 179 (543)
Q Consensus 145 ~~-~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~-------------------------------------- 179 (543)
.| +.- -|......+.-++.+..- ...--|-.|...
T Consensus 190 tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIk 269 (660)
T COG5107 190 TPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIK 269 (660)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhh
Confidence 22 211 111111111111111000 000011111111
Q ss_pred ---------------------HHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 180 ---------------------TDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 180 ---------------------~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++++..-| ..+.+|+.....+...++-+.|+...++.+...|.- ...+
T Consensus 270 wE~en~l~L~~~~~~qRi~y~~~q~~~y~~-~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL---~~~l------ 339 (660)
T COG5107 270 WEMENGLKLGGRPHEQRIHYIHNQILDYFY-YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL---TMFL------ 339 (660)
T ss_pred HhhcCCcccCCCcHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch---heeH------
Confidence 222222222 235566666666777888889999999998888872 2222
Q ss_pred HHHHHhhcChHHHHHHHHHHhh--------cC-------CCcHHH-HHHHHhHHHHHHH----HHHHHHHHhcCCHHHHH
Q 009096 239 LMFNISELRFENAVSSAEKAGL--------LD-------YSNVEI-ASVLTNVKMVVRA----RTRGNNLFSSRRYSEAC 298 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~--------~~-------p~~~~~-~~~l~~~~~~~~~----~~~g~~~~~~~~~~~A~ 298 (543)
+..+...++-+.-..+|+++.+ .+ .+++.. ..++ ++....+ -..-+...+..-.+.|.
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell--~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELL--LKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHH--HHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 4444444554444455555431 00 011100 0000 0000000 00111222333466777
Q ss_pred HHHHHHhccCCCChhHHhHHHHH-HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 299 SAYGEGLKYDSYNSILYCNRAIC-WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 299 ~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
..|.++-+..-....++..-|.+ +...|++.-|-..|+-.+...|+++......-..+...++-+.|...|+++++.-.
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 77777765542334444443433 55678899999999999999988876666666677788888899999988776533
No 463
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.42 Score=48.14 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=77.6
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhH----------HhHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYR----------SNRAATLTALGRLTEAVSDCEEAVRLD-- 112 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~-- 112 (543)
..++..|..+|......-.++.|...|-+.-.. |. .... ...|.+-.--|++++|.+.|-.+-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 347888999998888888888888877665221 11 1111 223333344466777766664331110
Q ss_pred -----------------------C---CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHh
Q 009096 113 -----------------------P---GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166 (543)
Q Consensus 113 -----------------------p---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (543)
. ..-.++.++|..+..+..+++|.++|.+.-. .-++..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------------~e~~~ec 831 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------------TENQIEC 831 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hHhHHHH
Confidence 0 1134566666666666666666666654432 1112222
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhc
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSN 217 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 217 (543)
++...+|++-. .....-|++ ..++-.+|.++...|.-++|.+.|-+
T Consensus 832 ly~le~f~~LE----~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELE----VLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHH----HHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 23333332221 112222433 34455566666666666666665543
No 464
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.54 Score=54.21 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC-CC----------C--
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ-PN----------Y-- 345 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~-- 345 (543)
..|.+.|.+....|+++.|..+.-+|.+.. -+.++...|..+.+.|+-..|+..+++.+..+ |+ .
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 345678999999999999999999888776 57899999999999999999999999999664 22 1
Q ss_pred ----HHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 346 ----TKALLRRAVSNEKLGRW--SEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 346 ----~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
..+.+..+.-....|++ ++-+++|..+.++.|...+-...++
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 12344444555555553 4457889999999996555444444
No 465
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.0032 Score=60.31 Aligned_cols=103 Identities=32% Similarity=0.354 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM---GLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
.+..|.-.+..+....|+..|.++++..|+....+.+++.++++. |+.-.|+..+..+++++|....+|+.|+.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 344566566667788999999999999999999999999998875 57788999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
.++++.+|+++...+....|.+....
T Consensus 457 el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 457 ELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 99999999999998888888665443
No 466
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.02 E-value=0.34 Score=46.31 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=81.9
Q ss_pred HHHHHhhcC-hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHh---------c
Q 009096 239 LMFNISELR-FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS--AYGEGL---------K 306 (543)
Q Consensus 239 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al---------~ 306 (543)
|.-+...|. -++|+..++.+++..|.+........ .+-...|.+|+. .+.+.+ .
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--------------~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--------------LFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 666667776 78899999999999988876542211 111122333321 111111 1
Q ss_pred cCC---CChhHHhHHH--HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 307 YDS---YNSILYCNRA--ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 307 ~~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
+.| .+.+.-+.|+ ..++..|+|.++.-+..=..++.| ++.++..+|.|+....+|++|..++.+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 223 2345555554 447789999999999998999999 899999999999999999999998764
No 467
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.01 E-value=0.0012 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777777763
No 468
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.01 E-value=0.004 Score=44.45 Aligned_cols=56 Identities=18% Similarity=0.362 Sum_probs=41.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHH----HHcCCC-cccEEEEEECCeEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA----KSEGVR-TVPTFKIYKNGEKL 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~----~~~~v~-~~Pt~~~~~~g~~~ 492 (543)
++.|..++|+.|......|++. ++.|..+|++.+++.. +..|.. ++|++ |.||+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 4578889999999999988763 5777788887764433 345766 89977 4577654
No 469
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.98 E-value=0.052 Score=44.34 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
...+......-...++.+++...+...--+.|+.+..-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45677778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHH
Q 009096 128 RLGQVE 133 (543)
Q Consensus 128 ~~g~~~ 133 (543)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888753
No 470
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.24 Score=49.74 Aligned_cols=239 Identities=14% Similarity=0.026 Sum_probs=118.4
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHH-HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQS-FEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
++.+| .+..|..+|......-.++-|...|-+.-.-+.-.....+.. ...-..++.+..--|.+++|.+.|-.+-..+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 33445 477888888888777788888887766544222111111111 1223445666666788888887775443321
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
+...++.++|+|-...++++..-.- .+....-.++...|..+..+..+++|.++|.+.-... +..+
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d----~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e-~~~e 830 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSD----DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE-NQIE 830 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-hHHH
Confidence 1234556667766666665543221 1112222355555777777777777777776552211 0111
Q ss_pred HHHHHHhHHHHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHH
Q 009096 268 IASVLTNVKMVVR-----------ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCN 336 (543)
Q Consensus 268 ~~~~l~~~~~~~~-----------~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 336 (543)
.+..+......+. +-.+|.++...|.-++|++.|-+.- .|.- --.....+++|.+|.+..+
T Consensus 831 cly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHH
Confidence 1111110000000 1234566666666666666654321 1110 0112334455555555443
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 337 VALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 337 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
+-- -|.-.......+.-+...++.-+|++.++++
T Consensus 903 ~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 903 RFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred hcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 311 1222222333444556667777777777776
No 471
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.97 E-value=0.0014 Score=38.80 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=14.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 349 LLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 349 ~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
+.++|.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 472
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.96 E-value=0.087 Score=43.06 Aligned_cols=104 Identities=12% Similarity=-0.066 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+......-...++.+++...+...--+.|..+.+-..-|.++...|+|.+|+..++.+..-.|..+.+--.++.|+..+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 45567777888899999999999889999999999999999999999999999999999999999988899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+.+= ..+-+.+++..+ ++.+...+
T Consensus 93 D~~W-r~~A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 93 DPSW-RRYADEVLESGA-DPDARALV 116 (160)
T ss_pred ChHH-HHHHHHHHhcCC-ChHHHHHH
Confidence 8641 122334555544 55554333
No 473
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.2 Score=48.94 Aligned_cols=77 Identities=17% Similarity=0.018 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCHHHHHHHhcC
Q 009096 66 EALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASLYFRLGQVENARHHLCF 141 (543)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 141 (543)
...+.+.......|+++......+..+...|+.+.|+..+...++ +.. .-.++.+|.++.-+.+|..|-..+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444445567888888888899999999998888999988887 332 23567788889999999999888876
Q ss_pred CCC
Q 009096 142 PGH 144 (543)
Q Consensus 142 a~~ 144 (543)
..+
T Consensus 329 L~d 331 (546)
T KOG3783|consen 329 LRD 331 (546)
T ss_pred HHh
Confidence 654
No 474
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.94 E-value=0.66 Score=48.35 Aligned_cols=280 Identities=11% Similarity=-0.042 Sum_probs=168.3
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc--c-------hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE--N-------AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY- 115 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 115 (543)
.+|......|.......++++|..+..++...-|. . ....-..|.+....|+.++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 46667778888889999999999999988765332 1 3555677888999999999999999999987764
Q ss_pred ----hhHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCC--HHHHHHHHHHHH--
Q 009096 116 ----NRAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGD--WKTVLRETDAAI-- 184 (543)
Q Consensus 116 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l-- 184 (543)
..++..+|.+..-.|++++|..+..++.+ ..+.. ...+...+..+.+....|+ +.+....+...-
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~----~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY----HLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998877654 11111 1123334455666677773 233333332222
Q ss_pred --HcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChh-HHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc
Q 009096 185 --AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPS-QVKFLVWLLKLMFNISELRFENAVSSAEKAGLL 261 (543)
Q Consensus 185 --~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 261 (543)
...|-. ......++.++...-+++.+.......++........ .......+.++.+.+..|+.++|...+.+....
T Consensus 569 ~l~q~~~~-~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 569 HLEQKPRH-EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred Hhhhcccc-hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222322 2223334444444444777777666666654333211 112222356799999999999999999887654
Q ss_pred CCCc--HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHH
Q 009096 262 DYSN--VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 262 ~p~~--~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
--.. ...+. .+ .+.-........|+.++|.....+...-+-.+ ...+.+....-..+|-..+|....
T Consensus 648 ~~~~~~~~~~~--a~-----~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al 720 (894)
T COG2909 648 LLNGQYHVDYL--AA-----AYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELAL 720 (894)
T ss_pred hcCCCCCchHH--HH-----HHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHH
Confidence 3322 11111 11 11112334466799999988887744321111 122333344444445555554444
Q ss_pred HH
Q 009096 336 NV 337 (543)
Q Consensus 336 ~~ 337 (543)
..
T Consensus 721 ~~ 722 (894)
T COG2909 721 DE 722 (894)
T ss_pred HH
Confidence 43
No 475
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.93 E-value=0.012 Score=44.49 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=73.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCh---hHHhHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNS---ILYCNRAICWSKMGL-----------WENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 349 (543)
++..++..|++-+|+++.+..+..++++. ..+..-|.++.++.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678999999999999999999988776 556667888766543 3568999999999999998888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 350 LRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 350 ~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+.+|.-+-...-|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777667777887777777765
No 476
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.92 E-value=0.016 Score=44.37 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=65.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHH-h---hCCCeEEEEEeCc-----CcHHHHHHcCC--CcccEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLC-V---RYPYVHFFKVDVE-----ESLAIAKSEGV--RTVPTF 483 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~-~---~~~~~~~~~~d~~-----~~~~~~~~~~v--~~~Pt~ 483 (543)
+.-.|++++..-+.++|-|-... |-..-+-.|.+++ + .-+++-++.|-+. +|.+++++|+| ..+|.+
T Consensus 10 D~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~ 87 (126)
T PF07912_consen 10 DELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI 87 (126)
T ss_dssp STTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred cceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence 34567888888899999887643 2333444555665 3 3356888888664 57899999999 578999
Q ss_pred EEEEC-CeEEEEE--cCC-CHHHHHHHHHhcCCCC
Q 009096 484 KIYKN-GEKLKEM--INP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 484 ~~~~~-g~~~~~~--~g~-~~~~~~~~~~~~~~~~ 514 (543)
++|.. +++.-++ .|. +.+.|+.|+++....+
T Consensus 88 ~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 88 YLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp EEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred EEecCCCCCCccCCccCCccHHHHHHHHHhCCCee
Confidence 99984 4555555 676 9999999999875543
No 477
>PRK10941 hypothetical protein; Provisional
Probab=96.92 E-value=0.0087 Score=54.29 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
++-.++.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999998776555443
No 478
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.88 E-value=0.24 Score=46.38 Aligned_cols=187 Identities=12% Similarity=-0.024 Sum_probs=130.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHH
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL----HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFN 242 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (543)
....+++..+...+.++-... .......++.+|..- .+..+|...|+.+.. ...+.....+ |.++
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~l------g~~~ 119 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNL------GLMY 119 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhH------HHHH
Confidence 345677888888888777632 235566667777654 357789999984433 3333333333 6666
Q ss_pred Hh----hcChHHHHHHHHHHhhcCCCcH-HHHHHHHhHHHHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHhccCCC
Q 009096 243 IS----ELRFENAVSSAEKAGLLDYSNV-EIASVLTNVKMVVRARTRGNNLFSS-----R--RYSEACSAYGEGLKYDSY 310 (543)
Q Consensus 243 ~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~g~~~~~~-----~--~~~~A~~~~~~al~~~p~ 310 (543)
.. ..+..+|..+|+++....-... ... ..+|..+..- - +...|+..|.++....
T Consensus 120 ~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~------------~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 120 ANGRGVPLDLVKALKYYEKAAKLGNVEAALAM------------YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred hcCCCcccCHHHHHHHHHHHHHcCChhHHHHH------------HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 65 4589999999999988754433 111 2245555443 1 3347999999988766
Q ss_pred ChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---------------CHHHHHHHHHH
Q 009096 311 NSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG---------------RWSEAVRDYEA 371 (543)
Q Consensus 311 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~ 371 (543)
++.+.+.+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|...+.+
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 68889999988866 4589999999999999876 88899999 776666 78888888888
Q ss_pred HHhcCCCChH
Q 009096 372 LRRELPGDNE 381 (543)
Q Consensus 372 al~~~p~~~~ 381 (543)
+....+....
T Consensus 263 ~~~~~~~~~~ 272 (292)
T COG0790 263 ACELGFDNAC 272 (292)
T ss_pred HHHcCChhHH
Confidence 8877665433
No 479
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.87 E-value=0.032 Score=43.54 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=67.2
Q ss_pred ChhHHhHHHHHHHHccC---HHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 311 NSILYCNRAICWSKMGL---WENSIEDCNVALR-IQPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
.....+++++++.+..+ ..+.+..++..++ -.|+ .-+..+.++..+.++++|+.|+.+.+..++..|+|+++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 36778899999887654 5678889999986 4444 34678899999999999999999999999999999998865
Q ss_pred HHHHHHHHH
Q 009096 386 LHNAQVALK 394 (543)
Q Consensus 386 l~~~~~~l~ 394 (543)
-..+...+.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 555544443
No 480
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.86 E-value=0.072 Score=51.05 Aligned_cols=172 Identities=15% Similarity=0.014 Sum_probs=107.3
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV 188 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 188 (543)
+..+|-+.+++..++.++..+|+.+.|.+.+++++ -.+++++.-.
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL----------------------------------f~~e~~~~~~- 77 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL----------------------------------FAFERAFHPS- 77 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------HHHHHHHHHH-
Confidence 56689999999999999999999999988876553 2222222110
Q ss_pred CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC-cHH
Q 009096 189 DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS-NVE 267 (543)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 267 (543)
... ... ..-.-..+++-...+....+.+++.....+.+.|-+..|++..+-.+.++|. |+-
T Consensus 78 -F~~--------~~~---------~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 78 -FSP--------FRS---------NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred -hhh--------hhc---------ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 000 000 0000011222222223333445555577888899999999999999999998 665
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHccCH--------------
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMGLW-------------- 328 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~-------------- 328 (543)
...++ +-....+.++|+--++.++....... .-|..-+..+.++...++-
T Consensus 140 g~ll~-----------ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~ 208 (360)
T PF04910_consen 140 GVLLF-----------IDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSEN 208 (360)
T ss_pred hhHHH-----------HHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccc
Confidence 43322 34445677888877777776554211 1245667777788877777
Q ss_pred -HHHHHHHHHHHhhCCC
Q 009096 329 -ENSIEDCNVALRIQPN 344 (543)
Q Consensus 329 -~~A~~~~~~al~~~p~ 344 (543)
+.|...+.+|+...|.
T Consensus 209 ~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 209 SESADEALQKAILRFPW 225 (360)
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 7777777777777664
No 481
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.86 E-value=0.0038 Score=55.66 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=68.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
-.-...|.-....|+.++|..+|+.|+.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34455666778899999999999999999999999999999999999999999999999999999999998877654
No 482
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.85 E-value=0.0049 Score=52.93 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=30.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHF 460 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~ 460 (543)
..++.++.|+...||+|..+.+.+..+..++++ +.|
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 567889999999999999999999999888764 444
No 483
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.85 E-value=0.0046 Score=44.97 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=74.6
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC--cHHHHHHcCCC----ccc-E
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE--SLAIAKSEGVR----TVP-T 482 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~--~~~~~~~~~v~----~~P-t 482 (543)
..+++...|...+.....+++.|..+--..-..+ ..+.++++...+ -+++.|||.. ...||.++.|. .-| +
T Consensus 4 e~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 4 EDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred ccccchHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 3567888999999999999998887653322222 367777777766 7899999986 67899999998 555 5
Q ss_pred EEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 483 FKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 483 ~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+.-|+||.-...+-.. +...+..|++.
T Consensus 83 LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCccccccchhhHHHHHHHhhC
Confidence 7888999877766666 78888887763
No 484
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.84 E-value=0.0021 Score=57.31 Aligned_cols=145 Identities=8% Similarity=-0.072 Sum_probs=100.1
Q ss_pred HHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 300 AYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR-RAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 300 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.|.++-...|+++..|...+....+.|-|.+--..|.++++.+|.+.+.|.. .+.=+...++++.+...|.+++.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555678899999999998889999999999999999999999999976 566678889999999999999999999
Q ss_pred ChHHHHHHHHHHHHHH--hhhhhhhhcccCCCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchh
Q 009096 379 DNEVAESLHNAQVALK--KSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEIS 445 (543)
Q Consensus 379 ~~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~ 445 (543)
+|.+|....+.....- -..+.. ....+.+....-++...-.+-...+-.+..+|..+.|+..+...
T Consensus 175 ~p~iw~eyfr~El~yiTKL~~R~~-Kte~l~nei~~d~d~~~e~~~~q~p~~~~~~~~~sS~~~~~k~d 242 (435)
T COG5191 175 SPRIWIEYFRMELMYITKLINRRE-KTEILSNEIGLDSDDKDEIERGQVPFAVFADCFNSSCFTAKKID 242 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHhhHH-HHhhhhccccccccccchhhcccCcHHHHHHhhCCcchhhhccc
Confidence 9999988776544332 111111 11111111111111122222223345566678888888776544
No 485
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.84 E-value=0.0074 Score=39.10 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=32.7
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
+.++.+|..+.++|+|++|..+.+.++++.|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567888889999999999999999999999988776554444
No 486
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.83 E-value=0.0055 Score=43.46 Aligned_cols=57 Identities=12% Similarity=0.343 Sum_probs=43.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|..+||+.|+.....|++ .++.|..+|++..++ +.+..+-..+|++ |.||+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 567888999999999999887 357778888887654 5555577888988 45776544
No 487
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.81 E-value=0.45 Score=45.72 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHH---HHHc----cC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAIC---WSKM----GL---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~~~----g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
.|+.++|+..+-..-.+.|+-.......-.+ +-.. |. .-+-+.+.++.+-.+.++.-++..-+.-.+.+.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 4778889888887777888765544332222 2111 11 123345556666677788877777777788889
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
+|.+|++++++.-+.+.....+-..+..+...+
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEPVTRQISTCITAL 823 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 999999999999887654444444444444444
No 488
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.063 Score=52.74 Aligned_cols=131 Identities=21% Similarity=0.019 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
.-++..+...+.++|.++...... + +...+...+....+.-....++..+|++..+..+|+.+....|..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~---------~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~ 117 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAA---------F-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ 117 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHH---------H-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH
Confidence 335555555566677776654221 1 344555666777777777777777777777777777777776666
Q ss_pred HHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 329 ENSIEDCNV-ALRIQPNYTKALLRR------AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 329 ~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
..+...+.. +....|++......+ +.....+|+..++....+++..+.|.++.+...+..+
T Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 118 FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 555555444 667777776554444 7777777777777777777777777777665555444
No 489
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.77 E-value=0.0025 Score=37.73 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
++.++|.+|..+|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775433
No 490
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.77 E-value=0.0067 Score=47.03 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=66.7
Q ss_pred hhccCCCCceeeeeeCCCCccccchhHhHHHHHhh---CCC-eEEEEEeCcCcHHHHHHcCCCc--ccEEEEEECCe-EE
Q 009096 420 KAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVR---YPY-VHFFKVDVEESLAIAKSEGVRT--VPTFKIYKNGE-KL 492 (543)
Q Consensus 420 ~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~---~~~-~~~~~~d~~~~~~~~~~~~v~~--~Pt~~~~~~g~-~~ 492 (543)
......+.+..+.|+ .-..-..+.+.+.+++++ +.+ +.|+.+|.+......+.||+.. +|++.+..... ..
T Consensus 10 ~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~K 87 (111)
T cd03072 10 EELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYL 87 (111)
T ss_pred HHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCc
Confidence 344445555555555 222335678889999999 876 9999999999888999999997 89999886422 22
Q ss_pred EE-EcCC-CHHHHHHHHHhcCC
Q 009096 493 KE-MINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 493 ~~-~~g~-~~~~~~~~~~~~~~ 512 (543)
.. ..+. +++.|.+|++.+.+
T Consensus 88 y~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 88 FPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCCCccccCHHHHHHHHHHHhc
Confidence 32 4455 99999999998765
No 491
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.76 E-value=0.13 Score=47.76 Aligned_cols=130 Identities=14% Similarity=0.033 Sum_probs=96.2
Q ss_pred HhhcChHHHHHHHHHHhhcC-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcc----CC---CC--
Q 009096 243 ISELRFENAVSSAEKAGLLD-YSNVEIASVLTNVKMVVRARTRGNNLFSSR-RYSEACSAYGEGLKY----DS---YN-- 311 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p---~~-- 311 (543)
...|+++.|..++.|+-... .-++..... ....+++.|......+ ++++|..+++++.++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~-----La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE-----LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH-----HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 46789999999999986544 333333222 2334678999999999 999999999999877 21 11
Q ss_pred -----hhHHhHHHHHHHHccCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 312 -----SILYCNRAICWSKMGLWE---NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 312 -----~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++.+.++.+++.+.+.+.+..-+
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 356777899999888765 455555566666788888886666666668999999999999988766
No 492
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.70 E-value=0.013 Score=43.26 Aligned_cols=67 Identities=28% Similarity=0.410 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHH
Q 009096 67 ALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY--NRAHQRLASLYFRLGQVE 133 (543)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 133 (543)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4567788888999999999999999999999999999999999888765 556666666666666533
No 493
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.70 E-value=0.0089 Score=52.57 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEe
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVD 464 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d 464 (543)
+++.++.|+.-.||+|..+.|.+ ..+.+.+++ +.|.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 35679999999999999999876 788888864 5555443
No 494
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.69 E-value=0.087 Score=50.50 Aligned_cols=179 Identities=12% Similarity=-0.078 Sum_probs=111.7
Q ss_pred HHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhH
Q 009096 74 AISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLK 153 (543)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 153 (543)
.++.+|-+.+++..++.++..+|+...|.+.+++|+-.-.......+..-..-...|. ...+......
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~------------~rL~~~~~eN 99 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN------------CRLDYRRPEN 99 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc------------cccCCccccc
Confidence 3566899999999999999999999999999999874321111100100000000000 0111111122
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCC-ChhHHH
Q 009096 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD-SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYS-PPSQVK 231 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 231 (543)
..-..+.+.......+.|-+..|++..+-.+.++|. ++-.+.+.+-....+.++++--+..++........+ ....-
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP- 178 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP- 178 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc-
Confidence 233455677778888999999999999999999999 444445555556667788877777777654421111 00000
Q ss_pred HHHHHHHHHHHHhhcCh---------------HHHHHHHHHHhhcCCCcH
Q 009096 232 FLVWLLKLMFNISELRF---------------ENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 266 (543)
...+..+.+++..++. ++|...+.+|+...|.-.
T Consensus 179 -n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 179 -NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred -cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1122336677777777 889999999998887643
No 495
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.66 E-value=0.014 Score=43.99 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=74.1
Q ss_pred HhhHHHhcCCHHHHHHHHHHHHhcCCcch---hhHHhHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCChhHH
Q 009096 54 AGNEMYRKGNFVEALKLYDKAISMSPENA---AYRSNRAATLTALGR-----------LTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (543)
+|..++..|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788999999999999999999887765 566677888876542 3468999999999999998888
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+.+|.-+-....|+++..--++++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888887777777777777666654
No 496
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.64 E-value=0.015 Score=43.94 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=66.6
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-e
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-E 490 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~ 490 (543)
+.+.+.....+....+++|-|+.++|+ .....+.+++..+. ++.|+.+. +..++..+++. .|++++|+.+ .
T Consensus 4 i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~ 76 (97)
T cd02981 4 LTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEE 76 (97)
T ss_pred cCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCccc
Confidence 445566666777888899999998877 45677888888885 58887666 46788888875 5899999764 3
Q ss_pred EEEEEcCC-CHHHHHHHHHh
Q 009096 491 KLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~ 509 (543)
....+.|. +.+.|.+||..
T Consensus 77 ~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 77 EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCccCCCCCCHHHHHHHHHh
Confidence 33446676 88999999874
No 497
>PRK10638 glutaredoxin 3; Provisional
Probab=96.61 E-value=0.0079 Score=43.93 Aligned_cols=57 Identities=19% Similarity=0.393 Sum_probs=41.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|..+||+.|+.....|++. ++.+..+|++..++ +.+..|...+|++ +.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 4567889999999999988874 56667778876543 4455688899987 44786554
No 498
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.60 E-value=0.022 Score=42.08 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHH
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD--NEVAESLHNAQVAL 393 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~l 393 (543)
+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+|+. ..++..+..+...+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 344555555555555555555555555555555555555555555443 44444444444444
No 499
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.86 Score=44.75 Aligned_cols=262 Identities=15% Similarity=-0.012 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHH
Q 009096 99 TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLR 178 (543)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (543)
+...+.+.......|.++......+..+...|+.+.|+..+...+. ..+.... ...++.++..+.-..+|..|..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~----~~~kQ~~-~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP----IRMKQVK-SLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666677899988889999999999998888998888775 2222222 2346678888888889999999
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHHHcc--------ChhHHHHHhhc---CCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 009096 179 ETDAAIAIGVDSSPQLVA-CKAEAHLKLH--------QNEDADSCLSN---MPKFEHYSPPSQVKFLVWLLKLMFNISEL 246 (543)
Q Consensus 179 ~~~~~l~~~p~~~~~~~~-~~a~~~~~~~--------~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 246 (543)
.+......+.-. ...|. ..|-|++..+ +-+.|...++. .+...|.+.+.... +-.+.+
T Consensus 325 ~~~~L~desdWS-~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKve 394 (546)
T KOG3783|consen 325 SFDLLRDESDWS-HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVE 394 (546)
T ss_pred HHHHHHhhhhhh-HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHH
Confidence 888888774322 22222 2334443222 22322222221 12222222111110 011111
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHH--HhcCCHHHHH---HHHHHHhcc-CCCCh-hHHhHHH
Q 009096 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL--FSSRRYSEAC---SAYGEGLKY-DSYNS-ILYCNRA 319 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~--~~~~~~~~A~---~~~~~al~~-~p~~~-~~~~~la 319 (543)
+|.. +. ..++....+. .+.++...+ +......+.. ..++. -+. ++++. --+..+|
T Consensus 395 rf~~------~~-~~~~~~~la~----------P~~El~Y~Wngf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g 456 (546)
T KOG3783|consen 395 RFVK------RG-PLNASILLAS----------PYYELAYFWNGFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKG 456 (546)
T ss_pred HHhc------cc-cccccccccc----------hHHHHHHHHhhcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHH
Confidence 1111 00 0111111000 001111111 1111222222 11211 112 33332 3456689
Q ss_pred HHHHHccCHHHHHHHHHHHHhh---CCC----CHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 320 ICWSKMGLWENSIEDCNVALRI---QPN----YTKALLRRAVSNEKLGR-WSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.++..+|+...|..+|+.+++. ... .|-++|.+|..+..+|. ..++..++.+|.+...++.--...-.+++.
T Consensus 457 ~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rIqA 536 (546)
T KOG3783|consen 457 VILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRLHMRIQA 536 (546)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 9999999999999999988843 111 36889999999999999 999999999999988665443333334444
Q ss_pred HH
Q 009096 392 AL 393 (543)
Q Consensus 392 ~l 393 (543)
.+
T Consensus 537 Al 538 (546)
T KOG3783|consen 537 AL 538 (546)
T ss_pred HH
Confidence 44
No 500
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.56 E-value=0.0044 Score=35.31 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+++.+|.++..+|++++|...|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555543
Done!