Query 009096
Match_columns 543
No_of_seqs 929 out of 4639
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 18:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ieg_A DNAJ homolog subfamily 100.0 6.5E-38 2.2E-42 303.6 42.3 345 47-398 2-358 (359)
2 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-39 3E-43 313.6 31.7 328 37-391 56-384 (388)
3 2y4t_A DNAJ homolog subfamily 100.0 1.2E-37 4E-42 311.9 40.2 365 33-404 11-387 (450)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-38 5.4E-43 311.8 29.0 338 31-395 16-354 (388)
5 2gw1_A Mitochondrial precursor 100.0 1E-33 3.5E-38 288.3 27.4 328 47-395 5-464 (514)
6 3fp2_A TPR repeat-containing p 100.0 1.9E-33 6.4E-38 288.0 28.4 331 45-396 22-478 (537)
7 3hym_B Cell division cycle pro 100.0 1.1E-32 3.8E-37 263.6 31.3 294 37-390 11-314 (330)
8 3fp2_A TPR repeat-containing p 100.0 3.7E-33 1.3E-37 285.8 29.2 335 27-389 38-505 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 2.4E-33 8.3E-38 280.6 27.2 335 28-379 40-414 (450)
10 2xpi_A Anaphase-promoting comp 100.0 7.5E-32 2.6E-36 279.9 36.5 318 45-389 197-593 (597)
11 2gw1_A Mitochondrial precursor 100.0 1.2E-32 4.2E-37 280.3 27.6 292 81-392 5-424 (514)
12 3ieg_A DNAJ homolog subfamily 100.0 2.9E-32 9.8E-37 263.8 27.8 315 30-361 19-355 (359)
13 2xpi_A Anaphase-promoting comp 100.0 1.5E-30 5E-35 270.2 29.8 339 37-396 107-532 (597)
14 1fch_A Peroxisomal targeting s 100.0 2.4E-31 8.2E-36 258.6 20.0 293 57-374 34-358 (368)
15 4g1t_A Interferon-induced prot 100.0 5.2E-30 1.8E-34 258.0 27.8 339 45-398 48-448 (472)
16 4eqf_A PEX5-related protein; a 100.0 1.2E-30 4E-35 253.5 21.2 273 40-371 57-352 (365)
17 2h6f_A Protein farnesyltransfe 100.0 1.4E-29 4.7E-34 244.0 27.1 260 39-393 88-366 (382)
18 3cv0_A Peroxisome targeting si 100.0 4.8E-30 1.6E-34 244.9 21.0 285 46-378 19-318 (327)
19 1fch_A Peroxisomal targeting s 100.0 1.9E-29 6.4E-34 245.2 23.0 307 60-398 13-348 (368)
20 4eqf_A PEX5-related protein; a 100.0 1.8E-29 6.3E-34 245.1 22.8 275 68-396 47-343 (365)
21 3hym_B Cell division cycle pro 100.0 3.2E-29 1.1E-33 239.5 23.5 275 29-363 37-322 (330)
22 3uq3_A Heat shock protein STI1 100.0 2.6E-27 8.9E-32 217.7 26.6 242 45-389 2-256 (258)
23 3mkr_A Coatomer subunit epsilo 100.0 9.1E-27 3.1E-31 217.3 28.3 262 92-385 9-274 (291)
24 3u4t_A TPR repeat-containing p 100.0 7.1E-27 2.4E-31 216.8 26.1 252 47-359 2-268 (272)
25 3u4t_A TPR repeat-containing p 100.0 4.8E-27 1.7E-31 217.9 23.6 254 81-391 2-266 (272)
26 4g1t_A Interferon-induced prot 100.0 3.2E-27 1.1E-31 237.6 22.6 305 61-383 24-371 (472)
27 2pl2_A Hypothetical conserved 100.0 1.6E-26 5.3E-31 206.3 22.9 213 44-374 1-213 (217)
28 3cv0_A Peroxisome targeting si 99.9 5.5E-26 1.9E-30 216.7 26.2 264 81-398 20-304 (327)
29 3sf4_A G-protein-signaling mod 99.9 1.1E-26 3.9E-31 228.6 20.5 309 45-395 6-362 (406)
30 2ooe_A Cleavage stimulation fa 99.9 1.5E-24 5E-29 221.3 33.5 330 39-389 4-472 (530)
31 4a1s_A PINS, partner of inscut 99.9 1.4E-26 4.8E-31 228.5 17.6 294 44-379 44-376 (411)
32 2h6f_A Protein farnesyltransfe 99.9 1.4E-25 4.9E-30 216.0 22.5 226 74-394 89-323 (382)
33 3ro2_A PINS homolog, G-protein 99.9 4.2E-26 1.4E-30 218.2 18.6 287 47-379 4-336 (338)
34 2xm6_A Protein corresponding t 99.9 1.4E-23 4.8E-28 211.8 33.4 318 33-388 62-448 (490)
35 2xm6_A Protein corresponding t 99.9 5.3E-23 1.8E-27 207.6 35.3 304 44-391 35-374 (490)
36 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.1E-25 7.2E-30 207.1 16.0 251 54-369 11-269 (275)
37 3mkr_A Coatomer subunit epsilo 99.9 7.1E-24 2.4E-28 197.7 25.0 280 55-369 6-288 (291)
38 2pl2_A Hypothetical conserved 99.9 3.5E-24 1.2E-28 191.1 20.1 186 192-396 5-201 (217)
39 1ouv_A Conserved hypothetical 99.9 8.9E-23 3E-27 189.3 26.0 233 44-382 2-258 (273)
40 2q7f_A YRRB protein; TPR, prot 99.9 2.4E-23 8.3E-28 189.3 21.5 94 46-139 21-114 (243)
41 3vtx_A MAMA; tetratricopeptide 99.9 1.2E-23 4.1E-28 182.6 18.5 173 191-381 4-176 (184)
42 2vq2_A PILW, putative fimbrial 99.9 5.8E-22 2E-26 177.7 28.3 215 44-386 4-222 (225)
43 2q7f_A YRRB protein; TPR, prot 99.9 1.4E-23 4.9E-28 190.8 17.9 215 157-390 23-237 (243)
44 4abn_A Tetratricopeptide repea 99.9 3.9E-23 1.3E-27 206.7 22.5 223 64-372 84-318 (474)
45 2ond_A Cleavage stimulation fa 99.9 1.9E-22 6.5E-27 190.4 25.0 270 46-386 6-303 (308)
46 3zzx_A Thioredoxin; oxidoreduc 99.9 8.4E-24 2.9E-28 162.7 12.0 101 411-511 3-105 (105)
47 3sf4_A G-protein-signaling mod 99.9 1E-24 3.5E-29 214.5 8.0 294 30-365 25-366 (406)
48 2ho1_A Type 4 fimbrial biogene 99.9 3.6E-22 1.2E-26 182.7 24.3 211 157-386 37-249 (252)
49 2ho1_A Type 4 fimbrial biogene 99.9 7.1E-22 2.4E-26 180.8 25.2 219 42-352 30-249 (252)
50 3ulq_A Response regulator aspa 99.9 1.3E-22 4.5E-27 198.0 20.5 315 44-377 8-370 (383)
51 2ooe_A Cleavage stimulation fa 99.9 2.1E-21 7.1E-26 198.0 30.2 303 71-393 2-438 (530)
52 3uq3_A Heat shock protein STI1 99.9 3.7E-22 1.3E-26 183.1 21.8 221 156-398 4-225 (258)
53 3vtx_A MAMA; tetratricopeptide 99.9 2.1E-22 7.2E-27 174.8 18.9 174 46-267 3-176 (184)
54 2qgv_A Hydrogenase-1 operon pr 99.9 7.8E-24 2.7E-28 167.4 8.4 102 415-516 23-129 (140)
55 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.8E-23 3E-27 189.4 16.8 235 87-383 10-252 (275)
56 4i17_A Hypothetical protein; T 99.9 1.5E-21 5E-26 175.8 24.0 98 45-142 4-102 (228)
57 2qsi_A Putative hydrogenase ex 99.9 2.2E-23 7.4E-28 164.1 10.0 99 412-511 19-122 (137)
58 3e4b_A ALGK; tetratricopeptide 99.9 2.6E-22 9E-27 199.4 20.4 304 53-390 8-364 (452)
59 2ond_A Cleavage stimulation fa 99.9 2.6E-21 8.9E-26 182.6 26.1 239 99-382 33-277 (308)
60 2av4_A Thioredoxin-like protei 99.9 1.2E-23 4E-28 167.7 8.1 105 410-514 23-141 (160)
61 4i17_A Hypothetical protein; T 99.9 2.8E-22 9.7E-27 180.5 18.1 216 158-391 8-225 (228)
62 4abn_A Tetratricopeptide repea 99.9 6.2E-22 2.1E-26 198.0 20.6 207 172-398 83-310 (474)
63 4a1s_A PINS, partner of inscut 99.9 2E-22 6.8E-27 198.7 16.7 272 79-395 45-358 (411)
64 3e4b_A ALGK; tetratricopeptide 99.9 7.2E-21 2.5E-25 189.1 26.2 327 16-389 36-399 (452)
65 3ro2_A PINS homolog, G-protein 99.9 9.3E-22 3.2E-26 187.8 17.8 270 82-396 5-319 (338)
66 3nf1_A KLC 1, kinesin light ch 99.9 2.5E-22 8.6E-27 189.8 13.4 265 39-343 18-309 (311)
67 4gyw_A UDP-N-acetylglucosamine 99.9 3.7E-22 1.3E-26 207.0 14.7 169 192-378 9-177 (723)
68 4gyw_A UDP-N-acetylglucosamine 99.9 1.1E-21 3.8E-26 203.5 16.8 175 42-264 3-177 (723)
69 3qky_A Outer membrane assembly 99.9 1.3E-20 4.4E-25 173.4 21.1 88 42-129 9-102 (261)
70 3dra_A Protein farnesyltransfe 99.9 1.2E-19 4.1E-24 167.7 27.1 252 50-388 34-301 (306)
71 3nf1_A KLC 1, kinesin light ch 99.9 3.9E-22 1.3E-26 188.5 10.6 255 78-378 23-310 (311)
72 1hz4_A MALT regulatory protein 99.9 1.4E-19 4.9E-24 175.8 28.3 287 47-377 13-324 (373)
73 3qky_A Outer membrane assembly 99.9 2.8E-20 9.6E-25 171.1 20.9 191 191-393 14-242 (261)
74 2pzi_A Probable serine/threoni 99.9 4.5E-21 1.6E-25 200.2 17.0 76 284-360 507-582 (681)
75 3ulq_A Response regulator aspa 99.9 6E-21 2.1E-25 186.2 16.3 247 51-343 106-370 (383)
76 1qqe_A Vesicular transport pro 99.9 4.4E-21 1.5E-25 179.4 13.9 191 192-388 77-282 (292)
77 3q15_A PSP28, response regulat 99.8 5.4E-20 1.9E-24 179.0 21.8 310 48-375 12-365 (378)
78 4euy_A Uncharacterized protein 99.8 3.5E-21 1.2E-25 149.6 9.8 101 411-511 3-104 (105)
79 4ga2_A E3 SUMO-protein ligase 99.8 5.2E-21 1.8E-25 159.4 10.0 141 238-390 3-144 (150)
80 3as5_A MAMA; tetratricopeptide 99.8 2E-19 7E-24 155.7 20.3 174 191-382 7-180 (186)
81 2vq2_A PILW, putative fimbrial 99.8 2.4E-19 8.1E-24 160.6 20.2 186 192-395 8-197 (225)
82 1qqe_A Vesicular transport pro 99.8 5.9E-20 2E-24 171.7 16.7 239 63-356 32-284 (292)
83 3urz_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 157.4 20.7 171 47-266 3-191 (208)
84 2yhc_A BAMD, UPF0169 lipoprote 99.8 6.2E-19 2.1E-23 158.0 22.3 84 47-130 3-92 (225)
85 4gco_A Protein STI-1; structur 99.8 9.2E-20 3.1E-24 146.6 15.0 120 258-389 5-124 (126)
86 3f3q_A Thioredoxin-1; His TAG, 99.8 4.7E-20 1.6E-24 144.1 12.4 100 411-510 9-108 (109)
87 1xi4_A Clathrin heavy chain; a 99.8 6.6E-18 2.3E-22 178.3 31.6 304 45-395 982-1329(1630)
88 3evi_A Phosducin-like protein 99.8 3E-20 1E-24 145.3 10.3 99 408-510 3-112 (118)
89 1ouv_A Conserved hypothetical 99.8 5.1E-18 1.8E-22 157.1 26.9 209 78-392 2-230 (273)
90 1gh2_A Thioredoxin-like protei 99.8 7.7E-20 2.6E-24 142.6 12.0 102 410-511 3-106 (107)
91 3urz_A Uncharacterized protein 99.8 9.7E-20 3.3E-24 161.0 14.2 194 157-389 4-199 (208)
92 1xi4_A Clathrin heavy chain; a 99.8 1E-17 3.6E-22 176.9 31.1 271 47-372 1104-1381(1630)
93 3q15_A PSP28, response regulat 99.8 2.3E-19 7.9E-24 174.6 17.2 246 50-342 103-366 (378)
94 3qfa_C Thioredoxin; protein-pr 99.8 5.2E-20 1.8E-24 145.6 10.0 101 411-511 14-116 (116)
95 1b89_A Protein (clathrin heavy 99.8 2.2E-20 7.5E-25 177.6 8.7 285 30-374 19-310 (449)
96 4ga2_A E3 SUMO-protein ligase 99.8 4.3E-20 1.5E-24 153.8 9.1 146 198-361 3-149 (150)
97 2wz9_A Glutaredoxin-3; protein 99.8 2.5E-19 8.5E-24 149.3 12.5 109 408-516 12-122 (153)
98 3dss_A Geranylgeranyl transfer 99.8 6.6E-17 2.3E-21 149.9 29.4 240 58-389 39-318 (331)
99 1r26_A Thioredoxin; redox-acti 99.8 3.2E-19 1.1E-23 142.6 12.0 103 409-511 20-122 (125)
100 3dra_A Protein farnesyltransfe 99.8 2.1E-18 7.1E-23 159.4 19.0 241 29-355 48-302 (306)
101 3gyz_A Chaperone protein IPGC; 99.8 2.4E-19 8.3E-24 148.3 11.5 127 242-380 12-138 (151)
102 2oe3_A Thioredoxin-3; electron 99.8 1.6E-19 5.6E-24 142.0 9.9 103 408-510 12-114 (114)
103 3m9j_A Thioredoxin; oxidoreduc 99.8 3.4E-19 1.2E-23 138.6 11.5 102 410-511 2-105 (105)
104 2l6c_A Thioredoxin; oxidoreduc 99.8 2.6E-19 8.8E-24 140.1 10.4 101 413-514 7-108 (110)
105 1xfl_A Thioredoxin H1; AT3G510 99.8 3.6E-19 1.2E-23 142.4 11.5 104 408-511 16-123 (124)
106 2pzi_A Probable serine/threoni 99.8 3.5E-19 1.2E-23 186.0 14.6 184 186-392 389-580 (681)
107 3gix_A Thioredoxin-like protei 99.8 2.8E-19 9.7E-24 147.6 10.3 105 410-514 5-123 (149)
108 3d6i_A Monothiol glutaredoxin- 99.8 7.6E-19 2.6E-23 138.3 12.1 102 410-511 2-108 (112)
109 1ep7_A Thioredoxin CH1, H-type 99.8 6E-19 2.1E-23 138.9 10.9 104 409-512 3-111 (112)
110 1t00_A Thioredoxin, TRX; redox 99.8 1.1E-18 3.7E-23 137.4 12.1 106 406-511 3-110 (112)
111 2voc_A Thioredoxin; electron t 99.8 9.1E-19 3.1E-23 137.6 11.6 99 416-515 8-108 (112)
112 3iv4_A Putative oxidoreductase 99.8 2.7E-19 9.2E-24 134.5 7.7 101 407-508 5-112 (112)
113 2vim_A Thioredoxin, TRX; thior 99.8 1.1E-18 3.7E-23 135.4 11.4 100 412-511 3-104 (104)
114 2vgx_A Chaperone SYCD; alterna 99.8 1.8E-18 6.1E-23 143.5 12.9 135 252-398 7-141 (148)
115 1syr_A Thioredoxin; SGPP, stru 99.8 1.3E-18 4.5E-23 136.7 11.4 101 411-511 11-111 (112)
116 3hz4_A Thioredoxin; NYSGXRC, P 99.8 2.9E-19 9.9E-24 146.5 7.5 127 410-539 8-136 (140)
117 2trx_A Thioredoxin; electron t 99.8 1.8E-18 6.3E-23 135.1 11.8 101 410-511 4-107 (108)
118 3as5_A MAMA; tetratricopeptide 99.8 4.8E-18 1.7E-22 146.9 15.7 173 46-266 6-178 (186)
119 4gco_A Protein STI-1; structur 99.8 6.6E-18 2.3E-22 135.7 15.2 102 41-142 6-107 (126)
120 3gnj_A Thioredoxin domain prot 99.8 1.7E-18 5.8E-23 136.1 11.3 97 415-511 10-109 (111)
121 2xc2_A Thioredoxinn; oxidoredu 99.8 1.8E-18 6.3E-23 137.2 11.6 101 410-511 15-117 (117)
122 3die_A Thioredoxin, TRX; elect 99.8 3E-18 1E-22 133.5 12.3 96 415-511 9-106 (106)
123 3edt_B KLC 2, kinesin light ch 99.8 5E-19 1.7E-23 164.4 9.3 234 59-341 12-281 (283)
124 2j23_A Thioredoxin; immune pro 99.8 1.9E-18 6.6E-23 137.7 11.3 104 408-511 15-120 (121)
125 3emx_A Thioredoxin; structural 99.8 8.3E-19 2.8E-23 142.7 9.3 108 407-518 15-132 (135)
126 2o8v_B Thioredoxin 1; disulfid 99.8 1.3E-18 4.4E-23 139.9 10.2 102 409-511 23-127 (128)
127 2pu9_C TRX-F, thioredoxin F-ty 99.8 2.2E-18 7.5E-23 135.3 11.2 102 409-511 6-110 (111)
128 2f51_A Thioredoxin; electron t 99.8 1.9E-18 6.5E-23 136.9 11.0 104 410-513 5-114 (118)
129 2es7_A Q8ZP25_salty, putative 99.8 3.2E-19 1.1E-23 145.0 6.6 102 417-518 25-131 (142)
130 1nsw_A Thioredoxin, TRX; therm 99.8 2.4E-18 8.3E-23 133.7 11.3 95 417-511 8-104 (105)
131 2dj1_A Protein disulfide-isome 99.8 2.1E-18 7.3E-23 141.8 11.5 107 410-518 19-130 (140)
132 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.5E-23 164.8 11.8 288 31-373 49-353 (449)
133 3tco_A Thioredoxin (TRXA-1); d 99.8 2.1E-18 7E-23 135.2 10.6 98 414-511 9-108 (109)
134 2ppt_A Thioredoxin-2; thiredox 99.8 2.5E-18 8.5E-23 143.1 11.7 106 407-513 46-153 (155)
135 1xwb_A Thioredoxin; dimerizati 99.8 4.1E-18 1.4E-22 132.7 12.1 101 411-511 3-106 (106)
136 2vm1_A Thioredoxin, thioredoxi 99.8 2.3E-18 7.9E-23 137.0 10.8 106 408-513 6-115 (118)
137 3q7a_A Farnesyltransferase alp 99.8 2E-16 6.9E-21 147.2 25.1 262 41-388 47-345 (349)
138 3gyz_A Chaperone protein IPGC; 99.8 7.2E-18 2.5E-22 139.4 13.8 116 34-149 22-138 (151)
139 1oaz_A Thioredoxin 1; immune s 99.8 1.5E-18 5E-23 138.5 9.2 102 409-511 4-122 (123)
140 4f3v_A ESX-1 secretion system 99.8 3.2E-17 1.1E-21 147.6 18.7 215 157-387 7-248 (282)
141 1w4v_A Thioredoxin, mitochondr 99.8 4.7E-18 1.6E-22 135.1 11.8 102 410-511 14-118 (119)
142 2ifu_A Gamma-SNAP; membrane fu 99.8 2.4E-18 8.1E-23 162.1 11.8 141 234-382 78-230 (307)
143 1dby_A Chloroplast thioredoxin 99.8 5.1E-18 1.8E-22 132.3 11.7 96 416-511 8-106 (107)
144 1ti3_A Thioredoxin H, PTTRXH1; 99.8 2.5E-18 8.4E-23 135.7 9.9 104 408-511 4-111 (113)
145 1thx_A Thioredoxin, thioredoxi 99.8 8.3E-18 2.9E-22 133.1 13.0 104 408-512 7-113 (115)
146 2i4a_A Thioredoxin; acidophIle 99.8 6.9E-18 2.4E-22 131.6 12.3 100 410-510 4-106 (107)
147 3edt_B KLC 2, kinesin light ch 99.8 2.6E-18 8.9E-23 159.6 11.5 237 94-376 13-282 (283)
148 2l57_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 137.1 11.2 100 421-520 21-125 (126)
149 3ul3_B Thioredoxin, thioredoxi 99.8 2.8E-18 9.5E-23 138.4 10.1 95 416-510 32-128 (128)
150 2ifu_A Gamma-SNAP; membrane fu 99.8 1.6E-17 5.4E-22 156.4 16.8 239 60-367 3-253 (307)
151 2hr2_A Hypothetical protein; a 99.8 5.4E-18 1.8E-22 137.9 11.2 123 276-398 9-154 (159)
152 2vlu_A Thioredoxin, thioredoxi 99.8 4.3E-18 1.5E-22 136.2 10.6 103 410-512 14-120 (122)
153 3d22_A TRXH4, thioredoxin H-ty 99.7 3.9E-18 1.3E-22 139.9 10.2 106 408-513 24-133 (139)
154 1hz4_A MALT regulatory protein 99.7 1.4E-16 4.6E-21 154.7 23.0 278 49-382 54-356 (373)
155 1faa_A Thioredoxin F; electron 99.7 9.4E-18 3.2E-22 134.6 12.2 102 409-511 19-123 (124)
156 2xcb_A PCRH, regulatory protei 99.7 1.2E-17 4E-22 137.8 13.0 134 253-398 5-138 (142)
157 2i1u_A Thioredoxin, TRX, MPT46 99.7 1E-17 3.6E-22 133.8 12.3 103 410-512 14-118 (121)
158 2r5s_A Uncharacterized protein 99.7 8.8E-18 3E-22 144.2 12.5 163 193-374 7-172 (176)
159 3q7a_A Farnesyltransferase alp 99.7 4.5E-16 1.5E-20 144.9 24.8 248 29-355 69-346 (349)
160 3p2a_A Thioredoxin 2, putative 99.7 6E-18 2.1E-22 140.3 10.8 103 410-513 40-144 (148)
161 1fb6_A Thioredoxin M; electron 99.7 1.2E-17 4.2E-22 129.7 11.9 94 417-510 8-104 (105)
162 2e0q_A Thioredoxin; electron t 99.7 5.9E-18 2E-22 131.3 9.7 97 416-512 6-103 (104)
163 3cxg_A Putative thioredoxin; m 99.7 5.2E-18 1.8E-22 137.4 9.4 104 408-512 20-129 (133)
164 1qgv_A Spliceosomal protein U5 99.7 1.2E-18 4.2E-23 142.5 5.7 105 410-514 5-123 (142)
165 1x5d_A Protein disulfide-isome 99.7 6.7E-18 2.3E-22 137.5 10.0 102 410-512 9-117 (133)
166 2yzu_A Thioredoxin; redox prot 99.7 1.5E-17 5E-22 130.3 11.1 98 416-513 8-107 (109)
167 3dss_A Geranylgeranyl transfer 99.7 7.7E-16 2.6E-20 142.8 24.1 202 163-383 35-275 (331)
168 2l5l_A Thioredoxin; structural 99.7 2.3E-17 7.9E-22 134.5 12.3 93 425-518 37-132 (136)
169 3uvt_A Thioredoxin domain-cont 99.7 1.4E-17 4.8E-22 130.8 10.6 95 415-510 11-110 (111)
170 2vsy_A XCC0866; transferase, g 99.7 7.1E-17 2.4E-21 165.8 18.4 162 205-384 2-166 (568)
171 3h79_A Thioredoxin-like protei 99.7 1.3E-17 4.5E-22 134.3 9.8 100 410-510 17-126 (127)
172 1x5e_A Thioredoxin domain cont 99.7 2.2E-17 7.6E-22 132.8 10.5 102 409-514 8-112 (126)
173 3qou_A Protein YBBN; thioredox 99.7 5.4E-17 1.8E-21 151.0 14.1 168 188-374 114-283 (287)
174 2r5s_A Uncharacterized protein 99.7 2.9E-17 9.9E-22 140.9 11.3 168 47-260 5-172 (176)
175 2dml_A Protein disulfide-isome 99.7 1.9E-17 6.7E-22 134.0 9.4 102 409-511 18-123 (130)
176 3hxs_A Thioredoxin, TRXP; elec 99.7 4.4E-17 1.5E-21 134.0 11.7 87 425-512 50-139 (141)
177 3dxb_A Thioredoxin N-terminall 99.7 3.4E-17 1.2E-21 145.5 11.7 101 415-515 18-121 (222)
178 3upv_A Heat shock protein STI1 99.7 1.8E-16 6.2E-21 127.7 15.0 114 279-392 5-124 (126)
179 2dbc_A PDCL2, unnamed protein 99.7 3.4E-17 1.2E-21 132.9 10.1 100 408-511 10-120 (135)
180 3aps_A DNAJ homolog subfamily 99.7 1.1E-17 3.7E-22 133.9 6.8 104 410-513 5-114 (122)
181 4f3v_A ESX-1 secretion system 99.7 9E-17 3.1E-21 144.6 13.5 233 47-353 6-248 (282)
182 1v98_A Thioredoxin; oxidoreduc 99.7 5.3E-17 1.8E-21 133.2 10.8 97 416-512 40-138 (140)
183 1p5q_A FKBP52, FK506-binding p 99.7 2.4E-18 8.2E-23 163.8 3.2 196 169-374 77-293 (336)
184 3rkv_A Putative peptidylprolyl 99.7 2.1E-16 7E-21 133.6 14.1 124 277-400 10-152 (162)
185 1mek_A Protein disulfide isome 99.7 2.1E-17 7.1E-22 131.9 7.4 100 415-514 13-119 (120)
186 1p5q_A FKBP52, FK506-binding p 99.7 1.2E-17 4E-22 159.0 6.9 177 203-399 76-283 (336)
187 1zma_A Bacterocin transport ac 99.7 1.7E-17 5.8E-22 131.7 6.6 95 415-509 18-118 (118)
188 4gcn_A Protein STI-1; structur 99.7 3.5E-16 1.2E-20 125.8 14.4 109 278-387 8-123 (127)
189 1wmj_A Thioredoxin H-type; str 99.7 3.2E-18 1.1E-22 138.7 2.3 108 408-515 14-125 (130)
190 2trc_P Phosducin, MEKA, PP33; 99.7 7E-17 2.4E-21 141.4 10.7 103 407-510 98-211 (217)
191 3dml_A Putative uncharacterize 99.7 1.8E-17 6E-22 127.0 5.9 87 425-511 17-109 (116)
192 3apq_A DNAJ homolog subfamily 99.7 9.7E-17 3.3E-21 141.4 10.5 99 415-513 103-203 (210)
193 2vsy_A XCC0866; transferase, g 99.7 5.3E-16 1.8E-20 159.3 17.7 165 170-353 2-169 (568)
194 3sz7_A HSC70 cochaperone (SGT) 99.7 8.7E-16 3E-20 130.0 15.9 117 281-397 14-132 (164)
195 1a0r_P Phosducin, MEKA, PP33; 99.7 1.1E-16 3.8E-21 141.6 10.4 104 407-511 111-225 (245)
196 2fo7_A Synthetic consensus TPR 99.7 3.2E-15 1.1E-19 121.5 18.2 134 234-379 3-136 (136)
197 3ga4_A Dolichyl-diphosphooligo 99.7 1.1E-16 3.6E-21 133.1 9.3 106 408-514 18-155 (178)
198 3qou_A Protein YBBN; thioredox 99.7 1.6E-15 5.5E-20 141.0 18.0 164 158-340 118-283 (287)
199 2e2e_A Formate-dependent nitri 99.7 6.6E-16 2.2E-20 132.6 14.3 136 242-389 20-158 (177)
200 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.2E-15 7.4E-20 134.8 18.0 179 191-381 3-219 (225)
201 2fwh_A Thiol:disulfide interch 99.7 5.3E-17 1.8E-21 131.9 6.5 102 412-513 15-129 (134)
202 2vgx_A Chaperone SYCD; alterna 99.7 5.3E-16 1.8E-20 128.5 12.6 110 35-144 8-117 (148)
203 2c2l_A CHIP, carboxy terminus 99.7 8.6E-16 3E-20 142.3 14.9 194 45-307 1-199 (281)
204 4e6h_A MRNA 3'-END-processing 99.7 1.1E-14 3.6E-19 149.5 24.2 341 34-393 52-517 (679)
205 2xcb_A PCRH, regulatory protei 99.7 1E-15 3.5E-20 126.0 13.2 110 35-144 5-114 (142)
206 2dj0_A Thioredoxin-related tra 99.7 3.8E-17 1.3E-21 133.4 4.3 99 410-509 9-118 (137)
207 2dj3_A Protein disulfide-isome 99.6 1.2E-16 4.2E-21 129.9 6.6 104 410-514 9-120 (133)
208 1dce_A Protein (RAB geranylger 99.6 3.2E-16 1.1E-20 158.7 11.0 134 248-393 89-239 (567)
209 3rjv_A Putative SEL1 repeat pr 99.6 7.5E-15 2.6E-19 129.8 18.5 185 175-388 4-208 (212)
210 1hxi_A PEX5, peroxisome target 99.6 1.4E-15 4.7E-20 121.1 12.3 100 282-381 21-120 (121)
211 2fbn_A 70 kDa peptidylprolyl i 99.6 1.1E-15 3.6E-20 133.9 11.9 150 239-400 11-176 (198)
212 4gcn_A Protein STI-1; structur 99.6 7.8E-16 2.7E-20 123.8 9.9 107 45-151 5-119 (127)
213 1fo5_A Thioredoxin; disulfide 99.6 4.3E-16 1.5E-20 115.6 7.7 80 427-510 3-84 (85)
214 1nho_A Probable thioredoxin; b 99.6 4.2E-16 1.4E-20 115.6 7.5 80 428-511 3-84 (85)
215 3mv2_B Coatomer subunit epsilo 99.6 7.9E-15 2.7E-19 133.7 17.3 190 176-386 85-293 (310)
216 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.4E-14 4.7E-19 128.4 18.4 133 234-381 8-156 (213)
217 3fk8_A Disulphide isomerase; A 99.6 2.7E-16 9.2E-21 127.8 6.2 87 424-510 27-131 (133)
218 2lst_A Thioredoxin; structural 99.4 2.6E-17 8.8E-22 133.3 0.0 106 417-522 10-126 (130)
219 1wou_A Thioredoxin -related pr 99.6 5.5E-16 1.9E-20 123.6 7.8 100 410-509 6-122 (123)
220 3q49_B STIP1 homology and U bo 99.6 8.9E-15 3E-19 119.5 15.1 115 282-396 13-132 (137)
221 1a17_A Serine/threonine protei 99.6 2.3E-14 7.8E-19 121.3 18.1 134 230-375 11-146 (166)
222 2djj_A PDI, protein disulfide- 99.6 5.7E-16 2E-20 123.6 7.6 99 410-512 9-117 (121)
223 3u3w_A Transcriptional activat 99.6 7.6E-15 2.6E-19 137.1 16.1 172 198-375 81-266 (293)
224 3rjv_A Putative SEL1 repeat pr 99.6 2.8E-14 9.7E-19 126.1 18.9 186 65-354 3-208 (212)
225 2qfc_A PLCR protein; TPR, HTH, 99.6 8.7E-15 3E-19 136.7 16.4 176 195-376 78-267 (293)
226 4e6h_A MRNA 3'-END-processing 99.6 2.3E-13 7.9E-18 139.6 27.9 348 33-388 85-549 (679)
227 3upv_A Heat shock protein STI1 99.6 1.3E-14 4.4E-19 116.7 14.8 100 45-144 1-100 (126)
228 1a8l_A Protein disulfide oxido 99.6 1.4E-15 4.9E-20 136.0 10.0 95 417-511 124-225 (226)
229 2yj7_A LPBCA thioredoxin; oxid 99.4 4.6E-17 1.6E-21 126.7 0.0 90 421-510 14-105 (106)
230 3ed3_A Protein disulfide-isome 99.6 4.5E-15 1.5E-19 137.3 12.9 104 410-514 19-144 (298)
231 3idv_A Protein disulfide-isome 99.6 1.9E-15 6.5E-20 136.8 10.2 103 410-514 17-124 (241)
232 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.1E-15 3.9E-20 151.7 9.3 144 244-399 246-404 (457)
233 1elw_A TPR1-domain of HOP; HOP 99.6 4.1E-14 1.4E-18 111.9 16.6 111 280-390 6-116 (118)
234 1dce_A Protein (RAB geranylger 99.6 2.6E-14 8.9E-19 144.8 18.9 163 167-355 38-235 (567)
235 2c2l_A CHIP, carboxy terminus 99.6 2E-15 6.9E-20 139.8 9.9 194 158-375 5-199 (281)
236 2lni_A Stress-induced-phosphop 99.6 2.1E-14 7.1E-19 116.4 14.7 113 281-393 19-131 (133)
237 1zu2_A Mitochondrial import re 99.6 5.4E-15 1.9E-19 119.9 10.2 103 289-391 13-136 (158)
238 2vyi_A SGTA protein; chaperone 99.6 7.8E-14 2.7E-18 112.5 17.0 115 281-395 15-129 (131)
239 2r2j_A Thioredoxin domain-cont 99.6 1.9E-15 6.5E-20 146.0 8.5 100 415-514 11-119 (382)
240 2xev_A YBGF; tetratricopeptide 99.6 4.8E-14 1.6E-18 113.8 15.5 111 281-391 5-121 (129)
241 2kuc_A Putative disulphide-iso 99.6 1.3E-15 4.5E-20 123.2 6.0 90 425-514 26-123 (130)
242 2fo7_A Synthetic consensus TPR 99.6 4.5E-14 1.5E-18 114.6 15.1 95 49-143 2-96 (136)
243 3idv_A Protein disulfide-isome 99.6 4.5E-15 1.5E-19 134.3 9.9 101 413-514 134-239 (241)
244 1z6n_A Hypothetical protein PA 99.6 1.3E-15 4.4E-20 127.1 5.7 85 425-510 53-141 (167)
245 1hh8_A P67PHOX, NCF-2, neutrop 99.6 7.1E-14 2.4E-18 123.7 17.4 148 194-374 8-171 (213)
246 2djk_A PDI, protein disulfide- 99.6 2.5E-15 8.6E-20 121.4 6.9 95 415-511 12-114 (133)
247 2qfc_A PLCR protein; TPR, HTH, 99.6 8.9E-14 3E-18 129.8 18.4 177 157-341 75-266 (293)
248 2fbn_A 70 kDa peptidylprolyl i 99.6 4.2E-15 1.5E-19 130.1 8.5 171 198-374 10-185 (198)
249 3sz7_A HSC70 cochaperone (SGT) 99.6 4E-14 1.4E-18 119.7 14.2 115 232-358 11-125 (164)
250 1ttz_A Conserved hypothetical 99.6 4.5E-15 1.5E-19 108.4 7.1 74 430-512 3-77 (87)
251 1sji_A Calsequestrin 2, calseq 99.6 1.1E-14 3.7E-19 139.1 11.8 102 410-514 13-124 (350)
252 3q6o_A Sulfhydryl oxidase 1; p 99.6 7.5E-15 2.6E-19 132.7 10.1 105 409-513 13-128 (244)
253 3f8u_A Protein disulfide-isome 99.6 7.3E-15 2.5E-19 147.1 10.7 100 415-514 7-111 (481)
254 2fgx_A Putative thioredoxin; N 99.6 4.4E-15 1.5E-19 112.1 6.8 77 427-507 29-106 (107)
255 2vyi_A SGTA protein; chaperone 99.6 1.4E-13 4.7E-18 111.0 16.0 126 41-208 5-130 (131)
256 1a17_A Serine/threonine protei 99.6 2.1E-13 7.3E-18 115.2 17.6 117 277-393 12-128 (166)
257 2dba_A Smooth muscle cell asso 99.6 1.4E-13 4.6E-18 113.9 16.0 108 282-389 32-142 (148)
258 2hr2_A Hypothetical protein; a 99.6 1.8E-14 6.1E-19 117.2 10.1 98 47-144 10-130 (159)
259 2b5e_A Protein disulfide-isome 99.5 9.5E-15 3.2E-19 147.0 10.3 104 410-514 16-124 (504)
260 1elr_A TPR2A-domain of HOP; HO 99.5 1.2E-13 4.1E-18 111.4 15.0 117 280-397 6-129 (131)
261 2lni_A Stress-induced-phosphop 99.5 1E-13 3.5E-18 112.3 14.4 118 232-361 16-133 (133)
262 3us3_A Calsequestrin-1; calciu 99.5 8.2E-15 2.8E-19 140.4 8.7 100 414-514 18-126 (367)
263 1na0_A Designed protein CTPR3; 99.5 3.5E-13 1.2E-17 107.6 16.8 111 282-392 13-123 (125)
264 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.7E-15 2.3E-19 146.1 7.9 159 204-368 246-407 (457)
265 1ihg_A Cyclophilin 40; ppiase 99.5 1E-13 3.5E-18 133.2 15.8 123 278-400 223-361 (370)
266 3u3w_A Transcriptional activat 99.5 3.8E-13 1.3E-17 125.5 18.6 173 160-341 78-266 (293)
267 1hxi_A PEX5, peroxisome target 99.5 3.9E-14 1.3E-18 112.6 9.8 96 49-144 18-113 (121)
268 3rkv_A Putative peptidylprolyl 99.5 9.9E-14 3.4E-18 116.9 12.5 99 46-144 9-125 (162)
269 2c0g_A ERP29 homolog, windbeut 99.5 3.5E-14 1.2E-18 125.7 10.0 98 410-513 18-133 (248)
270 3kp8_A Vkorc1/thioredoxin doma 99.5 1.2E-14 4.2E-19 111.5 6.1 75 426-510 12-93 (106)
271 3k9i_A BH0479 protein; putativ 99.5 2.5E-14 8.7E-19 113.2 7.9 97 290-386 2-101 (117)
272 2hls_A Protein disulfide oxido 99.5 5.1E-14 1.7E-18 126.3 10.3 89 426-518 138-232 (243)
273 2qc7_A ERP31, ERP28, endoplasm 99.5 7.4E-14 2.5E-18 123.3 10.9 93 415-511 11-118 (240)
274 3mv2_B Coatomer subunit epsilo 99.5 1.1E-12 3.7E-17 119.7 18.7 265 46-349 12-290 (310)
275 3q49_B STIP1 homology and U bo 99.5 1.6E-13 5.5E-18 111.9 11.7 103 42-144 3-105 (137)
276 2ywm_A Glutaredoxin-like prote 99.5 5.3E-14 1.8E-18 125.9 9.4 93 416-511 125-219 (229)
277 2e2e_A Formate-dependent nitri 99.5 6E-14 2.1E-18 120.2 9.3 128 204-349 22-152 (177)
278 2kck_A TPR repeat; tetratricop 99.5 1.4E-13 4.7E-18 107.7 10.6 99 282-380 10-111 (112)
279 1ilo_A Conserved hypothetical 99.5 7.7E-14 2.6E-18 100.9 8.3 71 430-507 3-76 (77)
280 1lu4_A Soluble secreted antige 99.5 9.8E-14 3.4E-18 113.1 10.0 86 425-511 23-135 (136)
281 3f9u_A Putative exported cytoc 99.5 1.8E-14 6.1E-19 122.7 5.5 88 424-511 45-165 (172)
282 1wao_1 Serine/threonine protei 99.5 5.9E-14 2E-18 139.8 9.3 141 45-227 3-156 (477)
283 1elw_A TPR1-domain of HOP; HOP 99.5 1.5E-12 5.2E-17 102.6 15.8 113 233-357 5-117 (118)
284 1na0_A Designed protein CTPR3; 99.5 1.7E-12 5.7E-17 103.6 16.1 116 233-360 10-125 (125)
285 3ph9_A Anterior gradient prote 99.5 3.3E-15 1.1E-19 121.9 0.0 93 417-509 35-139 (151)
286 2ju5_A Thioredoxin disulfide i 99.5 4.5E-14 1.5E-18 117.4 6.5 88 424-512 45-152 (154)
287 2dba_A Smooth muscle cell asso 99.5 2.5E-12 8.6E-17 106.2 17.2 107 38-144 18-127 (148)
288 4b4t_Q 26S proteasome regulato 99.5 1.9E-13 6.7E-18 135.3 12.3 217 48-307 4-245 (434)
289 2if4_A ATFKBP42; FKBP-like, al 99.5 7.5E-14 2.6E-18 132.7 8.7 148 234-381 181-334 (338)
290 1wao_1 Serine/threonine protei 99.5 5.6E-14 1.9E-18 140.0 8.1 130 238-379 12-154 (477)
291 3t58_A Sulfhydryl oxidase 1; o 99.5 1.3E-13 4.3E-18 136.7 10.4 104 409-513 13-128 (519)
292 1zu2_A Mitochondrial import re 99.5 2E-13 6.9E-18 110.7 9.2 92 243-346 13-125 (158)
293 2if4_A ATFKBP42; FKBP-like, al 99.5 1E-13 3.6E-18 131.7 8.8 112 33-144 164-292 (338)
294 1zzo_A RV1677; thioredoxin fol 99.4 2.8E-13 9.7E-18 110.3 9.7 87 425-512 24-135 (136)
295 3erw_A Sporulation thiol-disul 99.4 2.2E-13 7.7E-18 112.4 9.1 84 425-508 33-145 (145)
296 2b5x_A YKUV protein, TRXY; thi 99.4 1.9E-13 6.6E-18 113.2 8.6 89 425-513 28-146 (148)
297 2kck_A TPR repeat; tetratricop 99.4 2E-13 6.9E-18 106.7 8.1 101 44-144 2-105 (112)
298 3gw4_A Uncharacterized protein 99.4 4.9E-13 1.7E-17 117.2 11.4 167 58-262 2-177 (203)
299 2f9s_A Thiol-disulfide oxidore 99.4 2.7E-13 9.2E-18 112.7 9.1 93 425-517 25-143 (151)
300 1a8l_A Protein disulfide oxido 99.4 3.7E-13 1.3E-17 120.2 10.5 96 416-511 9-112 (226)
301 3apo_A DNAJ homolog subfamily 99.4 9.7E-14 3.3E-18 147.4 7.8 101 414-514 121-223 (780)
302 3ira_A Conserved protein; meth 99.4 5.3E-14 1.8E-18 117.1 4.4 94 416-509 29-141 (173)
303 3qcp_A QSOX from trypanosoma b 99.4 3.3E-14 1.1E-18 136.6 3.4 88 409-497 24-124 (470)
304 1sen_A Thioredoxin-like protei 99.4 8.6E-15 2.9E-19 122.9 -0.6 95 417-511 37-147 (164)
305 2h30_A Thioredoxin, peptide me 99.4 1.8E-13 6.2E-18 115.5 7.3 91 424-514 36-158 (164)
306 2xev_A YBGF; tetratricopeptide 99.4 4.6E-12 1.6E-16 101.9 15.2 118 235-361 5-125 (129)
307 2lja_A Putative thiol-disulfid 99.4 6.3E-13 2.2E-17 110.6 10.3 91 425-515 29-146 (152)
308 3raz_A Thioredoxin-related pro 99.4 4E-13 1.4E-17 111.6 9.0 89 425-513 23-141 (151)
309 4b4t_Q 26S proteasome regulato 99.4 7.8E-13 2.7E-17 130.9 12.5 230 82-376 4-246 (434)
310 3ia1_A THIO-disulfide isomeras 99.4 4E-13 1.4E-17 112.1 8.7 89 427-516 31-148 (154)
311 1ihg_A Cyclophilin 40; ppiase 99.4 2.6E-12 8.8E-17 123.4 15.5 137 232-368 223-363 (370)
312 2uy1_A Cleavage stimulation fa 99.4 2.2E-10 7.5E-15 114.2 30.0 334 45-393 11-397 (493)
313 3gw4_A Uncharacterized protein 99.4 3.9E-12 1.3E-16 111.4 14.8 164 168-341 3-176 (203)
314 3or5_A Thiol:disulfide interch 99.4 6.3E-13 2.2E-17 112.3 9.1 92 425-516 33-155 (165)
315 3k9i_A BH0479 protein; putativ 99.4 1.4E-12 4.9E-17 102.9 10.4 100 244-352 2-101 (117)
316 3eyt_A Uncharacterized protein 99.4 8.4E-13 2.9E-17 110.6 9.5 90 425-514 27-154 (158)
317 3f8u_A Protein disulfide-isome 99.4 4.2E-13 1.4E-17 134.3 8.9 102 414-516 357-465 (481)
318 3uem_A Protein disulfide-isome 99.4 5.2E-13 1.8E-17 128.3 9.2 100 410-512 251-357 (361)
319 1elr_A TPR2A-domain of HOP; HO 99.4 2E-12 6.8E-17 104.2 11.1 106 45-150 1-114 (131)
320 3lor_A Thiol-disulfide isomera 99.4 1E-12 3.5E-17 110.4 9.2 89 425-513 29-156 (160)
321 3gl3_A Putative thiol:disulfid 99.4 1.3E-12 4.6E-17 108.6 9.8 94 425-518 27-148 (152)
322 2l6j_A TPR repeat-containing p 99.4 8.9E-13 3E-17 103.0 7.8 97 47-143 3-105 (111)
323 1wjk_A C330018D20RIK protein; 99.4 1.1E-12 3.7E-17 99.5 7.9 80 426-512 15-96 (100)
324 3ro3_A PINS homolog, G-protein 99.4 3.8E-12 1.3E-16 106.8 12.2 141 232-378 9-161 (164)
325 2lrn_A Thiol:disulfide interch 99.4 1.4E-12 4.8E-17 108.4 9.3 89 425-515 28-144 (152)
326 2kat_A Uncharacterized protein 99.4 8.1E-12 2.8E-16 98.2 13.2 102 295-396 2-105 (115)
327 2b5e_A Protein disulfide-isome 99.4 3.3E-13 1.1E-17 135.8 5.8 102 410-514 360-469 (504)
328 4evm_A Thioredoxin family prot 99.4 2.3E-12 8E-17 105.1 9.9 86 425-510 21-137 (138)
329 3fkf_A Thiol-disulfide oxidore 99.3 3.1E-12 1.1E-16 105.8 9.2 86 425-512 32-146 (148)
330 3hcz_A Possible thiol-disulfid 99.3 2.1E-12 7.1E-17 106.9 7.8 85 425-509 30-143 (148)
331 3hdc_A Thioredoxin family prot 99.3 5.5E-12 1.9E-16 105.5 10.2 88 425-512 40-152 (158)
332 2l5o_A Putative thioredoxin; s 99.3 2.6E-12 9E-17 106.9 8.1 94 425-518 27-147 (153)
333 2b1k_A Thiol:disulfide interch 99.3 2E-12 6.7E-17 109.6 7.2 86 424-511 49-159 (168)
334 2dlx_A UBX domain-containing p 99.3 2E-12 7E-17 105.4 6.7 103 424-526 40-150 (153)
335 3apo_A DNAJ homolog subfamily 99.3 2.4E-12 8.2E-17 136.7 8.6 103 410-513 659-768 (780)
336 2l6j_A TPR repeat-containing p 99.3 1.3E-12 4.5E-17 102.0 4.9 92 280-371 6-103 (111)
337 3ha9_A Uncharacterized thiored 99.3 8.5E-12 2.9E-16 105.3 10.2 87 425-512 36-164 (165)
338 2ywm_A Glutaredoxin-like prote 99.3 3.1E-12 1.1E-16 114.4 7.8 95 417-511 9-114 (229)
339 1kng_A Thiol:disulfide interch 99.3 3.7E-12 1.3E-16 106.4 7.6 86 425-511 41-151 (156)
340 1na3_A Designed protein CTPR2; 99.3 2.7E-11 9.4E-16 90.5 11.3 86 45-130 6-91 (91)
341 3kcm_A Thioredoxin family prot 99.3 1.1E-11 3.7E-16 103.3 9.9 93 425-517 27-148 (154)
342 3eur_A Uncharacterized protein 99.3 9.1E-12 3.1E-16 102.1 8.8 82 426-509 31-142 (142)
343 3ro3_A PINS homolog, G-protein 99.3 9.5E-12 3.3E-16 104.3 8.7 146 193-344 10-161 (164)
344 2lrt_A Uncharacterized protein 99.3 1.1E-11 3.9E-16 102.7 8.7 82 426-507 35-143 (152)
345 2cvb_A Probable thiol-disulfid 99.3 1.2E-11 4E-16 106.9 8.6 90 425-514 32-161 (188)
346 2ywi_A Hypothetical conserved 99.3 6.2E-12 2.1E-16 109.5 6.9 89 426-514 45-176 (196)
347 3fw2_A Thiol-disulfide oxidore 99.2 1.6E-11 5.4E-16 101.7 8.8 85 425-511 32-147 (150)
348 3ewl_A Uncharacterized conserv 99.2 1.2E-11 4.2E-16 101.3 7.9 85 425-511 26-140 (142)
349 3kh7_A Thiol:disulfide interch 99.2 1.2E-11 4.1E-16 105.3 8.0 85 425-511 57-166 (176)
350 3lwa_A Secreted thiol-disulfid 99.2 1.1E-11 3.8E-16 106.5 7.5 88 425-512 58-181 (183)
351 4fo5_A Thioredoxin-like protei 99.2 2.6E-11 8.8E-16 99.5 9.1 83 425-509 31-142 (143)
352 3kp9_A Vkorc1/thioredoxin doma 99.2 2.6E-12 8.9E-17 115.9 3.2 77 429-510 200-278 (291)
353 2k8s_A Thioredoxin; dimer, str 99.2 9.7E-12 3.3E-16 90.2 5.2 71 430-504 4-78 (80)
354 2kc7_A BFR218_protein; tetratr 99.2 2E-11 6.7E-16 93.1 7.1 90 283-380 5-95 (99)
355 2e7p_A Glutaredoxin; thioredox 99.2 5E-12 1.7E-16 99.5 3.5 86 418-510 12-106 (116)
356 3s9f_A Tryparedoxin; thioredox 99.2 2.2E-11 7.5E-16 102.4 7.4 72 425-496 47-147 (165)
357 1o8x_A Tryparedoxin, TRYX, TXN 99.2 2E-11 6.9E-16 100.6 7.0 72 425-496 27-127 (146)
358 3ma5_A Tetratricopeptide repea 99.2 1.2E-10 4.1E-15 88.8 10.8 76 307-382 2-77 (100)
359 2hls_A Protein disulfide oxido 99.2 2.3E-11 8E-16 108.9 7.9 97 412-511 10-116 (243)
360 1i5g_A Tryparedoxin II; electr 99.2 2.2E-11 7.6E-16 100.0 7.1 72 425-496 27-127 (144)
361 1na3_A Designed protein CTPR2; 99.2 2.3E-10 7.8E-15 85.3 12.0 76 284-359 15-90 (91)
362 1hyu_A AHPF, alkyl hydroperoxi 99.2 4.5E-11 1.5E-15 120.2 10.6 82 426-511 117-199 (521)
363 2kat_A Uncharacterized protein 99.2 1.5E-10 5E-15 90.9 11.3 100 249-360 2-103 (115)
364 2hyx_A Protein DIPZ; thioredox 99.2 2.3E-11 8E-16 114.1 7.6 87 425-511 81-198 (352)
365 3u5r_E Uncharacterized protein 99.2 3.8E-11 1.3E-15 105.9 8.4 89 426-514 58-189 (218)
366 1o73_A Tryparedoxin; electron 99.2 3.1E-11 1E-15 99.2 6.8 71 425-495 27-126 (144)
367 3ma5_A Tetratricopeptide repea 99.2 1.4E-10 4.7E-15 88.4 9.4 88 43-130 2-91 (100)
368 1ego_A Glutaredoxin; electron 99.2 4.3E-11 1.5E-15 88.1 6.1 73 430-509 3-81 (85)
369 1jfu_A Thiol:disulfide interch 99.1 1E-10 3.5E-15 100.7 9.1 89 425-513 59-181 (186)
370 2ls5_A Uncharacterized protein 98.7 4.5E-12 1.6E-16 106.2 0.0 89 425-513 32-149 (159)
371 2uy1_A Cleavage stimulation fa 99.1 1.8E-08 6.3E-13 100.3 26.0 313 33-374 33-412 (493)
372 2k6v_A Putative cytochrome C o 99.1 1.8E-10 6.1E-15 97.8 9.5 87 425-511 34-172 (172)
373 3n71_A Histone lysine methyltr 99.1 6.5E-10 2.2E-14 109.8 14.1 132 236-376 313-465 (490)
374 2kc7_A BFR218_protein; tetratr 99.1 4.6E-10 1.6E-14 85.3 9.9 86 51-144 3-89 (99)
375 2rli_A SCO2 protein homolog, m 99.1 1.7E-10 5.8E-15 97.9 7.5 88 425-512 25-164 (171)
376 2lus_A Thioredoxion; CR-Trp16, 98.7 1.1E-11 3.9E-16 101.7 0.0 72 426-497 25-127 (143)
377 1klx_A Cysteine rich protein B 99.1 4.2E-09 1.4E-13 85.4 14.4 119 245-385 8-134 (138)
378 1pc2_A Mitochondria fission pr 99.0 2.1E-09 7.3E-14 86.0 11.7 102 294-395 14-120 (152)
379 3uem_A Protein disulfide-isome 99.0 1.2E-09 4E-14 104.9 12.4 98 416-513 124-231 (361)
380 2ggt_A SCO1 protein homolog, m 99.0 2.7E-10 9.2E-15 95.8 7.0 88 425-512 22-161 (164)
381 2vup_A Glutathione peroxidase- 99.0 3.2E-10 1.1E-14 97.8 6.8 90 425-514 47-187 (190)
382 3drn_A Peroxiredoxin, bacterio 99.0 6E-10 2E-14 93.3 8.2 83 426-508 28-142 (161)
383 3cmi_A Peroxiredoxin HYR1; thi 99.0 2.8E-10 9.6E-15 96.4 6.0 88 425-513 31-169 (171)
384 1h75_A Glutaredoxin-like prote 99.0 5.5E-10 1.9E-14 81.2 5.5 72 430-511 3-77 (81)
385 3dwv_A Glutathione peroxidase- 99.0 1.6E-09 5.4E-14 93.1 9.1 89 425-513 45-184 (187)
386 3gyk_A 27KDA outer membrane pr 99.0 1.3E-09 4.6E-14 92.5 8.6 82 425-511 21-172 (175)
387 1we0_A Alkyl hydroperoxide red 99.0 7.8E-10 2.7E-14 95.1 7.1 88 425-512 30-157 (187)
388 1r7h_A NRDH-redoxin; thioredox 99.0 1.6E-09 5.3E-14 77.4 7.3 69 430-508 3-74 (75)
389 3n71_A Histone lysine methyltr 99.0 2.8E-09 9.5E-14 105.3 11.5 93 51-143 312-420 (490)
390 3bee_A Putative YFRE protein; 99.0 8.6E-09 2.9E-13 76.5 11.4 75 308-382 2-79 (93)
391 2bmx_A Alkyl hydroperoxidase C 98.9 1.2E-09 4.1E-14 94.6 7.2 88 425-512 44-170 (195)
392 2p5q_A Glutathione peroxidase 98.9 1.1E-09 3.9E-14 92.6 6.9 89 425-513 31-169 (170)
393 1zof_A Alkyl hydroperoxide-red 98.9 1.8E-09 6.2E-14 93.7 8.2 87 425-511 32-160 (198)
394 2p31_A CL683, glutathione pero 98.9 1.1E-09 3.7E-14 93.6 6.5 87 425-511 48-180 (181)
395 3ly7_A Transcriptional activat 98.9 2.9E-08 9.8E-13 92.2 15.5 130 238-381 202-345 (372)
396 1xvw_A Hypothetical protein RV 98.9 4E-09 1.4E-13 88.2 8.9 84 427-510 37-158 (160)
397 3bee_A Putative YFRE protein; 98.9 1.3E-08 4.4E-13 75.5 10.3 74 44-117 2-78 (93)
398 2v1m_A Glutathione peroxidase; 98.9 2.7E-09 9.2E-14 90.2 7.5 87 425-511 30-166 (169)
399 1eej_A Thiol:disulfide interch 98.9 2.1E-09 7.1E-14 94.4 6.9 80 425-510 85-209 (216)
400 2f8a_A Glutathione peroxidase 98.9 2.9E-09 9.9E-14 92.8 7.4 87 425-511 46-206 (208)
401 3u64_A Protein TP_0956; tetrat 98.9 2E-07 6.7E-12 82.8 18.8 87 293-379 178-273 (301)
402 2obi_A PHGPX, GPX-4, phospholi 98.9 3.5E-09 1.2E-13 90.7 7.4 86 425-510 46-182 (183)
403 1kte_A Thioltransferase; redox 98.9 2.1E-09 7.3E-14 82.5 5.4 85 419-509 5-100 (105)
404 1t3b_A Thiol:disulfide interch 98.9 3.2E-09 1.1E-13 92.8 7.1 80 425-510 85-209 (211)
405 2h01_A 2-Cys peroxiredoxin; th 98.8 7E-09 2.4E-13 89.5 7.9 87 425-511 30-158 (192)
406 1xvq_A Thiol peroxidase; thior 98.8 6.3E-09 2.1E-13 88.2 7.3 86 425-511 43-164 (175)
407 1zye_A Thioredoxin-dependent p 98.8 8E-09 2.7E-13 91.0 7.8 86 426-511 56-184 (220)
408 1uul_A Tryparedoxin peroxidase 98.8 7.6E-09 2.6E-13 90.0 7.1 87 425-511 35-164 (202)
409 2gs3_A PHGPX, GPX-4, phospholi 98.8 7.8E-09 2.7E-13 88.6 6.9 86 425-510 48-184 (185)
410 2v5f_A Prolyl 4-hydroxylase su 98.8 5.8E-08 2E-12 74.1 10.9 79 46-124 3-88 (104)
411 2cq9_A GLRX2 protein, glutared 98.8 4.3E-09 1.5E-13 83.9 4.6 88 415-511 16-114 (130)
412 1klx_A Cysteine rich protein B 98.8 5.2E-08 1.8E-12 78.9 11.1 120 207-354 10-137 (138)
413 3qww_A SET and MYND domain-con 98.8 4.9E-08 1.7E-12 94.8 12.5 105 283-387 303-428 (433)
414 3kij_A Probable glutathione pe 98.8 4.9E-09 1.7E-13 89.4 4.9 87 425-511 37-169 (180)
415 2v5f_A Prolyl 4-hydroxylase su 98.8 1E-07 3.6E-12 72.7 11.7 82 312-393 5-93 (104)
416 2i81_A 2-Cys peroxiredoxin; st 98.8 1.4E-08 4.9E-13 88.8 7.7 87 425-511 51-179 (213)
417 2hze_A Glutaredoxin-1; thiored 98.8 2.5E-09 8.5E-14 83.2 2.5 87 417-509 10-107 (114)
418 1qmv_A Human thioredoxin perox 98.7 1.8E-08 6.2E-13 87.2 7.7 87 425-511 33-162 (197)
419 2jsy_A Probable thiol peroxida 98.7 3.1E-08 1.1E-12 83.3 9.0 86 425-510 43-165 (167)
420 2b7k_A SCO1 protein; metalloch 98.7 1.4E-08 4.8E-13 88.1 6.8 87 425-511 40-178 (200)
421 1v58_A Thiol:disulfide interch 98.7 3.7E-08 1.3E-12 87.9 9.2 84 426-511 97-232 (241)
422 1xzo_A BSSCO, hypothetical pro 98.7 4.5E-08 1.5E-12 83.0 9.1 88 425-512 32-172 (174)
423 3qwp_A SET and MYND domain-con 98.7 1.6E-07 5.4E-12 91.4 13.8 106 284-389 293-419 (429)
424 1pc2_A Mitochondria fission pr 98.7 2E-07 6.8E-12 74.6 10.7 98 247-356 13-115 (152)
425 3h93_A Thiol:disulfide interch 98.7 3.9E-08 1.3E-12 84.8 7.2 85 425-511 24-183 (192)
426 3ztl_A Thioredoxin peroxidase; 98.6 8E-08 2.7E-12 84.7 8.5 85 425-509 68-195 (222)
427 3u64_A Protein TP_0956; tetrat 98.6 5.6E-07 1.9E-11 79.9 13.5 87 247-345 178-273 (301)
428 3ic4_A Glutaredoxin (GRX-1); s 98.6 7.2E-08 2.5E-12 71.7 6.8 70 429-508 13-91 (92)
429 3qww_A SET and MYND domain-con 98.6 4.1E-07 1.4E-11 88.3 13.7 102 239-349 305-424 (433)
430 3qwp_A SET and MYND domain-con 98.6 6E-07 2E-11 87.3 14.9 115 235-358 290-425 (429)
431 3ly7_A Transcriptional activat 98.6 1.1E-07 3.6E-12 88.4 8.9 141 74-225 186-343 (372)
432 3a2v_A Probable peroxiredoxin; 98.6 3.3E-08 1.1E-12 87.7 4.9 87 425-511 32-161 (249)
433 3gkn_A Bacterioferritin comigr 98.6 1.4E-07 4.8E-12 78.9 8.5 85 426-510 35-160 (163)
434 3hd5_A Thiol:disulfide interch 98.6 9.7E-08 3.3E-12 82.5 7.6 42 425-466 24-66 (195)
435 2a4v_A Peroxiredoxin DOT5; yea 98.6 1.7E-07 5.7E-12 78.0 8.5 71 427-498 36-136 (159)
436 2ht9_A Glutaredoxin-2; thiored 98.6 2.1E-08 7E-13 81.3 2.7 85 417-510 40-135 (146)
437 1nzn_A CGI-135 protein, fissio 98.5 9.3E-07 3.2E-11 67.9 11.2 102 293-394 16-122 (126)
438 2i3y_A Epididymal secretory gl 98.5 3.5E-07 1.2E-11 79.6 9.6 87 425-512 55-211 (215)
439 2lqo_A Putative glutaredoxin R 98.5 3E-07 1E-11 67.4 7.3 75 428-511 4-83 (92)
440 3me7_A Putative uncharacterize 98.5 3.8E-07 1.3E-11 76.7 8.4 91 426-516 28-166 (170)
441 2c0d_A Thioredoxin peroxidase 98.5 3.7E-07 1.3E-11 80.1 8.0 87 425-511 55-183 (221)
442 4g2e_A Peroxiredoxin; redox pr 98.4 3.2E-07 1.1E-11 75.9 6.5 86 425-510 29-156 (157)
443 3nzn_A Glutaredoxin; structura 98.4 7.8E-07 2.7E-11 67.5 8.0 73 426-508 20-102 (103)
444 2r37_A Glutathione peroxidase 98.4 6.8E-07 2.3E-11 77.4 8.3 87 425-512 37-193 (207)
445 3gv1_A Disulfide interchange p 98.4 3.6E-07 1.2E-11 74.0 5.3 81 425-513 13-140 (147)
446 2klx_A Glutaredoxin; thioredox 98.4 4.8E-07 1.6E-11 66.7 5.6 57 429-492 7-66 (89)
447 3ixr_A Bacterioferritin comigr 98.4 8.5E-07 2.9E-11 75.2 7.6 84 426-509 51-175 (179)
448 2l4c_A Endoplasmic reticulum r 98.3 2.8E-06 9.4E-11 66.4 9.8 93 411-510 24-122 (124)
449 3c1r_A Glutaredoxin-1; oxidize 98.3 2.6E-07 8.8E-12 72.0 3.8 71 417-493 16-94 (118)
450 1q98_A Thiol peroxidase, TPX; 98.3 1.6E-06 5.4E-11 72.5 8.8 84 425-508 42-162 (165)
451 1psq_A Probable thiol peroxida 98.3 2.2E-06 7.6E-11 71.4 9.6 85 425-509 41-162 (163)
452 2yan_A Glutaredoxin-3; oxidore 98.3 8.9E-07 3E-11 67.5 6.5 68 417-493 8-84 (105)
453 3qmx_A Glutaredoxin A, glutare 98.3 1.3E-06 4.4E-11 65.4 7.0 62 425-493 13-79 (99)
454 2pn8_A Peroxiredoxin-4; thiore 98.3 1.2E-06 4E-11 76.4 7.8 87 425-511 47-176 (211)
455 1n8j_A AHPC, alkyl hydroperoxi 98.3 1.9E-06 6.4E-11 73.6 8.4 87 426-512 30-156 (186)
456 2yzh_A Probable thiol peroxida 98.3 2.8E-06 9.5E-11 71.5 9.1 84 426-510 47-170 (171)
457 4gqc_A Thiol peroxidase, perox 98.3 5.8E-07 2E-11 74.9 4.8 87 424-510 31-158 (164)
458 2znm_A Thiol:disulfide interch 98.3 1.9E-06 6.5E-11 74.3 8.1 82 426-511 22-179 (195)
459 3zrd_A Thiol peroxidase; oxido 98.3 2.7E-06 9.1E-11 73.4 8.9 84 425-508 77-197 (200)
460 3hz8_A Thiol:disulfide interch 98.3 2.8E-06 9.7E-11 72.8 9.0 40 426-465 24-64 (193)
461 3p7x_A Probable thiol peroxida 98.2 2.9E-06 1E-10 70.9 8.4 84 425-509 45-165 (166)
462 1nm3_A Protein HI0572; hybrid, 98.2 2.6E-06 8.8E-11 76.2 8.5 74 425-498 32-143 (241)
463 3uma_A Hypothetical peroxiredo 98.2 2E-06 6.8E-11 72.9 7.2 82 428-509 59-183 (184)
464 1z6m_A Conserved hypothetical 98.2 3.9E-06 1.3E-10 70.9 8.7 79 426-509 27-175 (175)
465 4dvc_A Thiol:disulfide interch 98.2 6.2E-06 2.1E-10 70.3 9.3 85 426-512 21-182 (184)
466 2wfc_A Peroxiredoxin 5, PRDX5; 98.2 4E-06 1.4E-10 69.9 7.7 74 425-498 30-142 (167)
467 4g26_A Pentatricopeptide repea 98.2 6.1E-05 2.1E-09 74.9 17.5 161 50-220 28-203 (501)
468 1wik_A Thioredoxin-like protei 98.2 2.4E-06 8.2E-11 65.5 5.6 67 418-493 7-82 (109)
469 3qpm_A Peroxiredoxin; oxidored 98.2 4.1E-06 1.4E-10 74.4 7.8 86 425-510 76-204 (240)
470 1fov_A Glutaredoxin 3, GRX3; a 98.1 4.1E-06 1.4E-10 60.5 6.3 68 430-509 3-74 (82)
471 3rhb_A ATGRXC5, glutaredoxin-C 98.1 1.6E-06 5.6E-11 67.1 4.3 68 417-493 10-85 (113)
472 3feu_A Putative lipoprotein; a 98.1 3.1E-06 1.1E-10 72.0 6.4 83 426-511 22-183 (185)
473 3mng_A Peroxiredoxin-5, mitoch 98.1 5E-06 1.7E-10 69.6 7.3 82 428-509 46-172 (173)
474 2khp_A Glutaredoxin; thioredox 98.1 3.6E-06 1.2E-10 62.3 5.8 58 429-493 7-68 (92)
475 1tp9_A Peroxiredoxin, PRX D (t 98.1 6.3E-06 2.2E-10 68.5 7.9 74 425-498 34-146 (162)
476 4g26_A Pentatricopeptide repea 98.1 0.00019 6.4E-09 71.4 19.8 170 162-375 31-204 (501)
477 3l9v_A Putative thiol-disulfid 98.1 4.8E-06 1.6E-10 71.1 7.1 41 426-466 14-58 (189)
478 2pwj_A Mitochondrial peroxired 98.1 5E-06 1.7E-10 69.7 6.4 81 427-508 45-169 (171)
479 2rem_A Disulfide oxidoreductas 98.1 1.9E-05 6.4E-10 67.9 9.7 82 426-511 25-183 (193)
480 1nzn_A CGI-135 protein, fissio 98.0 7.6E-05 2.6E-09 57.3 11.8 99 246-356 15-118 (126)
481 4h7y_A Dual specificity protei 98.0 0.0001 3.6E-09 57.7 12.6 121 260-396 7-141 (161)
482 3o48_A Mitochondria fission 1 98.0 9.1E-05 3.1E-09 56.9 12.1 87 310-396 38-128 (134)
483 3tjj_A Peroxiredoxin-4; thiore 98.0 7.5E-06 2.6E-10 73.2 7.2 86 425-510 90-218 (254)
484 3msz_A Glutaredoxin 1; alpha-b 98.0 1.1E-05 3.6E-10 59.3 6.4 72 429-510 5-85 (89)
485 1y8m_A FIS1; mitochondria, unk 98.0 0.00022 7.4E-09 55.7 13.7 87 309-395 36-126 (144)
486 4f9z_D Endoplasmic reticulum r 98.0 4.6E-05 1.6E-09 67.3 10.9 102 410-512 115-225 (227)
487 3h8q_A Thioredoxin reductase 3 98.0 4.2E-06 1.4E-10 64.7 3.5 69 416-493 7-82 (114)
488 3ctg_A Glutaredoxin-2; reduced 98.0 3.9E-06 1.3E-10 66.3 3.3 73 415-493 26-106 (129)
489 3ffl_A Anaphase-promoting comp 98.0 4.8E-05 1.6E-09 61.2 9.5 94 50-143 22-149 (167)
490 4hde_A SCO1/SENC family lipopr 97.9 4.2E-05 1.4E-09 63.9 9.0 86 425-510 31-168 (170)
491 4f9z_D Endoplasmic reticulum r 97.9 5.7E-05 2E-09 66.6 10.3 98 409-513 10-113 (227)
492 1un2_A DSBA, thiol-disulfide i 97.9 6.6E-06 2.3E-10 70.4 3.3 43 426-468 113-159 (197)
493 1prx_A HORF6; peroxiredoxin, h 97.8 4E-05 1.4E-09 67.2 8.1 83 428-510 34-167 (224)
494 3ffl_A Anaphase-promoting comp 97.8 0.00011 3.8E-09 59.1 9.6 106 282-388 24-163 (167)
495 1xcc_A 1-Cys peroxiredoxin; un 97.8 4.3E-05 1.5E-09 66.8 7.5 83 428-510 34-164 (220)
496 2v2g_A Peroxiredoxin 6; oxidor 97.8 6.9E-05 2.4E-09 65.9 8.1 84 427-510 30-163 (233)
497 3l9s_A Thiol:disulfide interch 97.7 4.4E-05 1.5E-09 65.1 6.5 40 426-465 21-64 (191)
498 4h7y_A Dual specificity protei 97.7 0.00028 9.6E-09 55.3 9.6 108 41-149 6-128 (161)
499 2ec4_A FAS-associated factor 1 97.7 0.00033 1.1E-08 58.3 10.8 86 423-510 52-166 (178)
500 3keb_A Probable thiol peroxida 97.6 0.00025 8.6E-09 61.3 9.2 83 425-510 47-174 (224)
No 1
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.5e-38 Score=303.58 Aligned_cols=345 Identities=21% Similarity=0.264 Sum_probs=315.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCCCC-CC---ChH-HHhHH---HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009096 127 FRLGQVENARHHLCFPGH-HP---DPN-ELLKL---QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK 198 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~---~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 198 (543)
...|++++|+..|+++++ .+ +.. .+..+ .....+...+..+...|++++|+..++++++..|.. +.++..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-AELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 999999999999999988 34 222 11111 123345566899999999999999999999999977 7889999
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
|.++...|++++|+..++++++..|.++.. +..+|.++...|++++|+..++++++..|++...+..+..+...
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEA------FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 999999999999999999999999998654 44559999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh----HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
.....+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 77788899999999999999999999999999874 46679999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
++...|++++|+.+|+++++++|+++.++..+..+...+++.++
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 358 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998887653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.8e-39 Score=313.61 Aligned_cols=328 Identities=17% Similarity=0.124 Sum_probs=188.0
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
++.++..+|.++..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++.
T Consensus 56 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (388)
T 1w3b_A 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
.++..+|.++..+|++++|+..|++++. .|+. ...+..++..+...|++++|+..|+++++.+|+. ...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 206 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNF--------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAY 206 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHH
Confidence 5555555555555555555555555443 2111 1234455555556666666666666666665554 4555
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
..+|.++...|++++|+..+++++..+|++... +..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------ 274 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVV------HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY------ 274 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------
Confidence 555666666666666666666666655555332 22335566666666666666666666666655543
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+
T Consensus 275 ------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 275 ------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp ------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 23566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+...|++++|+..|+++++++|+++.++..++.+..
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 666666666666666666666666666655555433
No 3
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.2e-37 Score=311.92 Aligned_cols=365 Identities=20% Similarity=0.244 Sum_probs=321.8
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
....+...+..+|.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 44556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH----HHhHH---HHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN----ELLKL---QSFEKHLNRCAESRKIGDWKTVLRETDAAI 184 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 184 (543)
|++..++..+|.++..+|++++|+..|++++. .++.. .+..+ .....++..+..+...|++++|+..+++++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 44332 22211 122346677888999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 185 AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 185 ~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
+..|.. ..++..+|.++...|++++|+..|+++++.+|.+.. .+..+|.++...|++++|+..|++++..+|+
T Consensus 171 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 171 EVCVWD-AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999887 788999999999999999999999999999998854 4555599999999999999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh----hHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 265 NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS----ILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
+...+..+..+........+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999888777777777778889999999999999999999999999985 4789999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhcc
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNM 404 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~ 404 (543)
.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+..+...+++....+++..
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~ 387 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKI 387 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGG
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999888887766655543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-38 Score=311.79 Aligned_cols=338 Identities=16% Similarity=0.079 Sum_probs=313.2
Q ss_pred CCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 31 NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 31 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
+.|...+...+..+|.++..+..+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++
T Consensus 16 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44666677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
.+|++..++..+|.++...|++++|+..|+++++ .|+.. ..+..++..+...|++++|+..|+++++.+|+
T Consensus 96 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY--------CVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999887 43332 34677888999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
. ...+..+|.++...|++++|+..|+++++.+|++.. .+..+|.++...|++++|+..|++++..+|++..++
T Consensus 168 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 168 F-AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp C-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 7 788999999999999999999999999999999854 445559999999999999999999999999998775
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|+++.++
T Consensus 241 ------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 241 ------------GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp ------------HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 350 LRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 350 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
..+|.++...|++++|+..|+++++++|++..++..++.+....++
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999888877665544
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=288.28 Aligned_cols=328 Identities=16% Similarity=0.151 Sum_probs=238.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
.++.++.+|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 345566666666666666666666666666665 4556666666666666666666666666666666666666666666
Q ss_pred HHhCCHHHHHHHhcCCCC-CC-----------------------------------------------------------
Q 009096 127 FRLGQVENARHHLCFPGH-HP----------------------------------------------------------- 146 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~----------------------------------------------------------- 146 (543)
..+|++++|+..|++++. .+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 666666666655554432 10
Q ss_pred --------------------------------------------------------------ChH-HHhHHHHHHHHHHH
Q 009096 147 --------------------------------------------------------------DPN-ELLKLQSFEKHLNR 163 (543)
Q Consensus 147 --------------------------------------------------------------~~~-~~~~~~~~~~~~~~ 163 (543)
++. ..........+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000 00013445667788
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI 243 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 243 (543)
+..+...|++++|+..+++++..+|. ..++..+|.++...|++++|+..+++++...|.+...+. .+|.++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY------HRGQMNF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHH------HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHH------HHHHHHH
Confidence 99999999999999999999999988 888999999999999999999999999999999876444 4499999
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
..|++++|+..|++++...|++..++. .+|.++...|++++|+..|+++++..|+++.++..+|.++.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYI------------QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT 383 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHH------------HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 999999999999999999999877653 35777777777777777777777777777777777777777
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTK------ALLRRAVSNEK---LGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
..|++++|+..|++++...|+++. +++.+|.++.. .|++++|+..|+++++++|+++.++..++.+....+
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 777777777777777777766644 77777777777 777777777777777777777777766666655554
Q ss_pred h
Q 009096 395 K 395 (543)
Q Consensus 395 ~ 395 (543)
+
T Consensus 464 ~ 464 (514)
T 2gw1_A 464 D 464 (514)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.9e-33 Score=288.00 Aligned_cols=331 Identities=17% Similarity=0.161 Sum_probs=269.4
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
+..++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCC-CCChHHH----------------------------------------------------
Q 009096 125 LYFRLGQVENARHHLCFPGH-HPDPNEL---------------------------------------------------- 151 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~-~~~~~~~---------------------------------------------------- 151 (543)
++..+|++++|+..|+ ++. .++....
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999885 332 1111000
Q ss_pred ---------------------------------------------------------hHHHHHHHHHHHHHhhhhcCCHH
Q 009096 152 ---------------------------------------------------------LKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 152 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
........+..++..+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 00011234667778888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHH
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSS 254 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 254 (543)
+|+..+++++..+|. ...+..+|.++...|++++|+..++++++.+|.++.. +..+|.++...|++++|+..
T Consensus 261 ~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 261 DAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT------YYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH------HHHHHHHHHhcCCHHHHHHH
Confidence 999999999999887 6788889999999999999999999999998887553 44448899999999999999
Q ss_pred HHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHH
Q 009096 255 AEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIED 334 (543)
Q Consensus 255 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 334 (543)
|++++..+|++..++. .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 333 ~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYI------------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHCTTCSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999998887653 3688888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCCH------HHHHHHHHHHHHc----------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 335 CNVALRIQPNYT------KALLRRAVSNEKL----------GRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 335 ~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
|+++++..|++. ..++.+|.++... |++++|+..|+++++.+|+++.++..++.+...+++.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 888887766544 3355667777777 8888888888888888888888777777776666543
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=263.59 Aligned_cols=294 Identities=13% Similarity=0.064 Sum_probs=259.1
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
....+...|.+++.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 33455566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhC-CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 117 RAHQRLASLYFRLG-QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 117 ~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
.++..+|.++...| ++++|+..| +++++.+|.. ..++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~~-~~~~ 128 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYL-----------------------------------------SKATTLEKTY-GPAW 128 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHH-----------------------------------------HHHHTTCTTC-THHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH-----------------------------------------HHHHHhCCcc-HHHH
Confidence 99999999999988 777777766 4555566665 5677
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
..+|.++...|++++|+..++++++..|.+...+.. +|.++...|++++|+..+++++..+|++..++
T Consensus 129 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------ 196 (330)
T 3hym_B 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY------IGLEYGLTNNSKLAERFFSQALSIAPEDPFVM------ 196 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH------HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHH------
Confidence 888999999999999999999999888887665444 49999999999999999999999999998765
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC---------CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD---------SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
..+|.++...|++++|+..|+++++.. |..+.++..+|.++...|++++|+..|+++++++|+++
T Consensus 197 ------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 197 ------HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred ------HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 347999999999999999999999875 66788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
.++..+|.++..+|++++|+.+|+++++++|+++.++..+..+.
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888765
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=3.7e-33 Score=285.80 Aligned_cols=335 Identities=12% Similarity=0.087 Sum_probs=292.9
Q ss_pred ccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 27 SCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
.+....|+..+++++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445688889999999999999999999999999999999999999999999999999999999999999888877553
Q ss_pred --------------------------------------------------------------------------------
Q 009096 107 -------------------------------------------------------------------------------- 106 (543)
Q Consensus 107 -------------------------------------------------------------------------------- 106 (543)
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence
Q ss_pred -----------------------------HHHhcCCCChh-------HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 107 -----------------------------EAVRLDPGYNR-------AHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 107 -----------------------------~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
++++.+|+++. ++..+|.++...|++++|+..|++++. .+++
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~- 276 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP- 276 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc-
Confidence 33344566533 577888899999999999999999887 4442
Q ss_pred HHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhH
Q 009096 150 ELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ 229 (543)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 229 (543)
..+..++.++...|++++|+..++++++.+|.. +.++..+|.++...|++++|+..++++++..|.+...+
T Consensus 277 --------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 277 --------NSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp --------HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred --------hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 347788999999999999999999999999987 78899999999999999999999999999999987654
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009096 230 VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309 (543)
Q Consensus 230 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 309 (543)
. .+|.++...|++++|+..++++++.+|++..++. .+|.++...|++++|+..|+++++..|
T Consensus 348 ~------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 348 I------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT------------FFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp H------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 4 4499999999999999999999999999988753 479999999999999999999999987
Q ss_pred CChhH------HhHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 310 YNSIL------YCNRAICWSKM----------GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 310 ~~~~~------~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
++... +..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 76544 45567889999 999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHH
Q 009096 374 RELPGDNEVAESLHNA 389 (543)
Q Consensus 374 ~~~p~~~~~~~~l~~~ 389 (543)
+++|++++....+...
T Consensus 490 ~~~~~~~~~~~~~~~~ 505 (537)
T 3fp2_A 490 ILARTMDEKLQATTFA 505 (537)
T ss_dssp HHC--CHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHhHH
Confidence 9999999987765543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.4e-33 Score=280.56 Aligned_cols=335 Identities=17% Similarity=0.089 Sum_probs=295.4
Q ss_pred cccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHH
Q 009096 28 CSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107 (543)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (543)
+....|...+++++..+|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|++
T Consensus 40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33445777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCh---hHHHHH------------HHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcC
Q 009096 108 AVRLDPGYN---RAHQRL------------ASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIG 171 (543)
Q Consensus 108 al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (543)
+++.+|++. .++..+ |.++...|++++|+..|++++. .+.. ...+..++.++...|
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD--------AELRELRAECFIKEG 191 (450)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTT
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHCC
Confidence 999999988 776655 6669999999999999999886 3322 244778899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH------HHHHHHHHHHHhh
Q 009096 172 DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF------LVWLLKLMFNISE 245 (543)
Q Consensus 172 ~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~~~~ 245 (543)
++++|+..++++++.+|.. +.++..+|.++...|++++|+..|++++...|++......+ .....+|.++...
T Consensus 192 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887 78899999999999999999999999999999986554333 1224458999999
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|++++|+..|++++...|+++..... .+..+|.++...|++++|+..++++++.+|+++.+|..+|.++...
T Consensus 271 g~~~~A~~~~~~~l~~~p~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPSIAEYTVR--------SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHH--------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 99999999999999999998764321 1345899999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH------------HHHcc-----CHHHHHHHHHH-HHhcCCCC
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVS------------NEKLG-----RWSEAVRDYEA-LRRELPGD 379 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~ 379 (543)
|++++|+..|+++++++|+++.++..++.+ |..+| +.+++.+.|++ +++..|++
T Consensus 343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999955 44445 56778899986 88898875
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-32 Score=279.86 Aligned_cols=318 Identities=12% Similarity=0.028 Sum_probs=268.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhh----------------------------------------
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAY---------------------------------------- 84 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------------------------------- 84 (543)
+.++..|+.+|..+.+.|++++|+..|+++++.+|++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 4568889999999999999999999999998888765444
Q ss_pred -------------------------------HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q 009096 85 -------------------------------RSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVE 133 (543)
Q Consensus 85 -------------------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (543)
+..+|.+|...|++++|+..|+++++.+|++..++..++.++...|+++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 4455566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH
Q 009096 134 NARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD 212 (543)
Q Consensus 134 ~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 212 (543)
+|+..+++++. .++ ....+..++..+...|++++|+..|+++++..|.+ ...+..++.++...|++++|+
T Consensus 357 ~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 357 KLYLISNDLVDRHPE--------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHHHHHHHHHCTT--------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhCcc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 66666665554 111 13456778899999999999999999999998876 778899999999999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 009096 213 SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292 (543)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~ 292 (543)
..|+++++..|.+...+.. +|.++...|++++|+..|+++++..|+++..+ ..+|.++...|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g 489 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLF------LGMQHMQLGNILLANEYLQSSYALFQYDPLLL------------NELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHH------HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH------------HHHHHHHHHTT
T ss_pred HHHHHHHHhCccchHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH------------HHHHHHHHHhC
Confidence 9999999999988665444 49999999999999999999999999988775 34799999999
Q ss_pred CHHHHHHHHHHHhcc------CCCC-hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 293 RYSEACSAYGEGLKY------DSYN-SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 293 ~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
++++|++.|+++++. +|++ ..+|..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999988 5664 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHH
Q 009096 366 VRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 366 ~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
.+.|+++++++|+++.++..+..+
T Consensus 570 ~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 570 ITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999998887764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=280.26 Aligned_cols=292 Identities=12% Similarity=0.046 Sum_probs=252.2
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCCh-HHHhHHHH--
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDP-NELLKLQS-- 156 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~-~~~~~~~~-- 156 (543)
.+..+..+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++ .|+. ..+..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 689999999999999999999999999987 3333 32211111
Q ss_pred --------------------------------------------------------------------------------
Q 009096 157 -------------------------------------------------------------------------------- 156 (543)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (543)
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence
Q ss_pred ----------------------HHHHHHHHHhhh---hcCCHHHHHHHHHHHHH-----c--CCCC------CHHHHHHH
Q 009096 157 ----------------------FEKHLNRCAESR---KIGDWKTVLRETDAAIA-----I--GVDS------SPQLVACK 198 (543)
Q Consensus 157 ----------------------~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~-----~--~p~~------~~~~~~~~ 198 (543)
...++..+..+. ..|++++|+..++++++ . .|+. ...++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 112223333333 38999999999999999 5 4433 25678889
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
|.++...|++++|+..++++++..|. .. .+..+|.++...|++++|+..+++++..+|++..++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------- 307 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VN------SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--------- 307 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HH------HHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH---------
Confidence 99999999999999999999999888 33 445559999999999999999999999999998875
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|+++.++..+|.++..
T Consensus 308 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 308 ---YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp ---HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRRELPGDNE------VAESLHNAQVA 392 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~ 392 (543)
.|++++|+..|++++++.|+++. ++..++.+...
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999866 77777766655
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.9e-32 Score=263.82 Aligned_cols=315 Identities=17% Similarity=0.060 Sum_probs=283.5
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|...+.+++..+|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34577778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC---CChhHHHHH------------HHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCH
Q 009096 110 RLDP---GYNRAHQRL------------ASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDW 173 (543)
Q Consensus 110 ~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (543)
+.+| ++..++..+ |.++...|++++|+..++++++ .++. ...+..++.++...|++
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD--------AELRELRAECFIKEGEP 170 (359)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCH
T ss_pred hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHCCCH
Confidence 9999 888888877 7999999999999999999887 3332 24578889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH------HHHHHHHHHHhhcC
Q 009096 174 KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL------VWLLKLMFNISELR 247 (543)
Q Consensus 174 ~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~g~ 247 (543)
++|+..++++++..|.. +..+..+|.++...|++++|+..++++++..|++...+..+. .....|.++...|+
T Consensus 171 ~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (359)
T 3ieg_A 171 RKAISDLKAASKLKSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 249 (359)
T ss_dssp HHHHHHHHHHHTTCSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999887 788999999999999999999999999999999866544332 23455889999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL 327 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 327 (543)
+++|+..+++++...|+++..+... +..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRS--------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 9999999999999999987654221 34589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 328 WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 328 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+++|+..|+++++++|++..++..++.++..+++
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876654
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.5e-30 Score=270.18 Aligned_cols=339 Identities=12% Similarity=-0.002 Sum_probs=254.0
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC----
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD---- 112 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 112 (543)
+++.+...| +...++.+|.++...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++.....
T Consensus 107 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 184 (597)
T 2xpi_A 107 GEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEK 184 (597)
T ss_dssp HHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccc
Confidence 333444455 4467778888888888888888888887654 5567777777777777777777777777522221
Q ss_pred ------------CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCC-hHHHhHH------------------------
Q 009096 113 ------------PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPD-PNELLKL------------------------ 154 (543)
Q Consensus 113 ------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~-~~~~~~~------------------------ 154 (543)
|.+..+|..+|.+|.+.|++++|+..|+++++ .++ ...+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp ------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred ccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 22366777777777777777777777777765 222 2111100
Q ss_pred --------------------------------------HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 155 --------------------------------------QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 155 --------------------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
.....+..++..+...|++++|+..|+++++.+|.+ ..++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 343 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-LDVYP 343 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-CTTHH
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc-HHHHH
Confidence 123345666777777888888888888888777765 55667
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.++.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..|+++++.+|++...+.
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------ 411 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAV------TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI------ 411 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHH------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 7778888888888888888887777777643 3444488888889999999999998888888877653
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
.+|.++...|++++|++.|+++++..|++..++..+|.+|.+.|++++|++.|+++++..|+++.+|..+|.++
T Consensus 412 ------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 412 ------GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485 (597)
T ss_dssp ------HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhc------CCCC-hHHHHHHHHHHHHHHhh
Q 009096 357 EKLGRWSEAVRDYEALRRE------LPGD-NEVAESLHNAQVALKKS 396 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~l~~~ 396 (543)
...|++++|++.|++++++ +|++ ..++..++.+....++.
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999988 5554 56777777766665543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.4e-31 Score=258.62 Aligned_cols=293 Identities=15% Similarity=0.002 Sum_probs=177.7
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q 009096 57 EMYRKGNFVEALK-LYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ 131 (543)
Q Consensus 57 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (543)
++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5556678888888 8888888777663 5577888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------------
Q 009096 132 VENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA-------------- 196 (543)
Q Consensus 132 ~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-------------- 196 (543)
+++|+..|++++. .++. ...+..++.++...|++++|+..+++++...|........
T Consensus 114 ~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 114 ELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred HHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 8888877776665 2221 2235556666666666666666667777666655222111
Q ss_pred -HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 197 -CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 197 -~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
.++.++ ..|++++|+..++++++..|.... ...+..+|.++...|++++|+..|++++..+|++..++
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 254 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSID----PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW------ 254 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH------
Confidence 234444 566666666666666666655211 12233336666666666666666666666666655443
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---------- 345 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------- 345 (543)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++.+.|++
T Consensus 255 ------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 255 ------NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 2246666666666666666666666666666666666666666666666666666666665555
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 346 -TKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 346 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
..+|..+|.++..+|++++|...++++++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 55666666666666666666665555443
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=258.03 Aligned_cols=339 Identities=12% Similarity=-0.054 Sum_probs=247.1
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc---------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM---------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--- 112 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 112 (543)
+..+..+..+|.++...|++++|+++|++++++ +|....++.++|.+|..+|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345667889999999999999999999999986 56667889999999999999999999999999863
Q ss_pred -----CCChhHHHHHHHHHHHhC--CHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHh---hhhcCCHHHHHHHHH
Q 009096 113 -----PGYNRAHQRLASLYFRLG--QVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAE---SRKIGDWKTVLRETD 181 (543)
Q Consensus 113 -----p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~ 181 (543)
+..+.++..+|.++...| ++++|+.+|+++++ .|+... .+..++.+ +...+++++|+..++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~--------~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE--------FTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH--------HHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 345778888888877654 79999999999987 444332 12333333 345688899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 182 AAIAIGVDSSPQLVACKAEAHLK----LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 182 ~~l~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
++++++|+. ..++..+|..+.. .+++++|+..+++++..+|...... ..+|.++...|++++|+..|++
T Consensus 200 ~al~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~------~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 200 QAIRLNPDN-QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL------RSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHCSSC-HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhcCCcc-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH------HHHHHHHHHcCchHHHHHHHHH
Confidence 999999987 6677777766554 4678899999999999999986544 4449999999999999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRA-------RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~-------~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 330 (543)
+++.+|++..++..+..+...... ...+......+.+++|+..|+++++.+|.+..++..+|.++...|++++
T Consensus 273 al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 273 ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 999999998876543322111000 0011111223346677777777777777777777778888888888888
Q ss_pred HHHHHHHHHhhCCCCHH---HHHHHHHH-HHHccCHHHHHHHHHHHHhc------------------------CCCChHH
Q 009096 331 SIEDCNVALRIQPNYTK---ALLRRAVS-NEKLGRWSEAVRDYEALRRE------------------------LPGDNEV 382 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~------------------------~p~~~~~ 382 (543)
|+.+|++++.++|++.. +++.+|.+ +...|++++|+.+|++++++ +|+++.+
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 88888887777766543 34555544 34667777777777777655 4556677
Q ss_pred HHHHHHHHHHHHhhhh
Q 009096 383 AESLHNAQVALKKSRG 398 (543)
Q Consensus 383 ~~~l~~~~~~l~~~~~ 398 (543)
+..++.+....++...
T Consensus 433 ~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCHHH
Confidence 7777777776665544
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.2e-30 Score=253.54 Aligned_cols=273 Identities=15% Similarity=0.075 Sum_probs=186.6
Q ss_pred cccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 40 KTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 40 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
.....+.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 57 HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33334455667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC---------
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS--------- 190 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--------- 190 (543)
..+|.++..+|++++|+..|+++++ ..|+.
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------------~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIK-----------------------------------------QNPKYKYLVKNKKG 175 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------HCHHHHCC------
T ss_pred HHHHHHHHccccHHHHHHHHHHHHH-----------------------------------------hCccchHHHhhhcc
Confidence 9999999999999999988866643 21111
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCC--CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY--SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
....+..+|.++...|++++|+..++++++..|. ++. .+..+|.++...|++++|+..|+++++.+|++..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 249 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 0122233455555555555555555555555555 322 23333666666666666666666666666666554
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC----
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN---- 344 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 344 (543)
+ ..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus 250 ~------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 250 W------------NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp H------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred H------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 3 235666666666666666666666666666666666666666666666666666666666555
Q ss_pred --------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 345 --------YTKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 345 --------~~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
+..+|..++.++..+|+.+.|....++
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 245566666666666666666555444
No 17
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1.4e-29 Score=244.01 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=221.5
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC-HHHHHHHHHHHHhcCCCChh
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR-LTEAVSDCEEAVRLDPGYNR 117 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 117 (543)
.++..+|.+++++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 46788899999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
+|+++|.++..+|++++|+..| +++++++|++ ..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~-----------------------------------------~kal~ldP~~-~~---- 201 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFI-----------------------------------------ADILNQDAKN-YH---- 201 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHH-----------------------------------------HHHHHHCTTC-HH----
T ss_pred HHHHHHHHHHHccCHHHHHHHH-----------------------------------------HHHHHhCccC-HH----
Confidence 9999999988877766665554 5556666655 23
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
+|..+|.++..+|++++|+..|+++++++|++..+|.
T Consensus 202 ------------------------------------a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~------- 238 (382)
T 2h6f_A 202 ------------------------------------AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN------- 238 (382)
T ss_dssp ------------------------------------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH-------
T ss_pred ------------------------------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH-------
Confidence 3444477777777888888888888888888887763
Q ss_pred HHHHHHHHHHHHh-cCCHHHH-----HHHHHHHhccCCCChhHHhHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHH
Q 009096 278 VVRARTRGNNLFS-SRRYSEA-----CSAYGEGLKYDSYNSILYCNRAICWSKMG--LWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 278 ~~~~~~~g~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
.+|.++.. .|.+++| +.+|+++++++|++..+|+++|.++...| ++++|++.++++ +.+|+++.++
T Consensus 239 -----~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al 312 (382)
T 2h6f_A 239 -----QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLI 312 (382)
T ss_dssp -----HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred -----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHH
Confidence 46888888 5554777 58999999999999999999999999988 699999999998 9999999999
Q ss_pred HHHHHHHHHcc--------C-HHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHH
Q 009096 350 LRRAVSNEKLG--------R-WSEAVRDYEAL-RRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 350 ~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~l 393 (543)
..+|.++.++| + +++|+++|+++ ++++|.....|..+.......
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999999985 3 59999999999 999999999998887765544
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=4.8e-30 Score=244.93 Aligned_cols=285 Identities=15% Similarity=0.090 Sum_probs=231.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
.+++.++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HH
Q 009096 126 YFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK-AE-AH 202 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~-a~-~~ 202 (543)
+...|++++|+..+++++. .+..... +... ....|.. .....+ +. ++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~--------------------~~~~~~~--~~~~~~~~~~~~ 148 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQL--------GSVN--------------------LQADVDI--DDLNVQSEDFFF 148 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------------CCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHH--------HHHH--------------------hHHHHHH--HHHHHHHHhHHH
Confidence 9999999999998876654 1111110 0000 0000000 000112 33 46
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++..+|++..++ .
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~ 210 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQ------LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW------------N 210 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------H
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH------------H
Confidence 6777777777777777777777643 344448888899999999999999999999887764 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------------CHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN------------YTKALL 350 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~ 350 (543)
.+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|++++...|+ ++.++.
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998 788999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.+|.++..+|++++|...++++++..|+
T Consensus 291 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 291 FFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999888776554
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.9e-29 Score=245.23 Aligned_cols=307 Identities=13% Similarity=0.066 Sum_probs=242.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHH-HHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHH
Q 009096 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVS-DCEEAVRLDPGYN----RAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 134 (543)
..+.++.+...++.+....|. ++..+|+|++|+. .|++++.+.|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344455555555555555442 5666799999999 9999999998874 569999999999999999
Q ss_pred HHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHH
Q 009096 135 ARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADS 213 (543)
Q Consensus 135 A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~ 213 (543)
|+..|+++++ .|+. ...+..+|.++...|++++|+..++++++.+|+. ..++..+|.++...|++++|+.
T Consensus 83 A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 83 AVLLFEAAVQQDPKH--------MEAWQYLGTTQAENEQELLAISALRRCLELKPDN-QTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp HHHHHHHHHHSCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999987 3332 2457788999999999999999999999999987 7889999999999999999999
Q ss_pred HhhcCCCCCCCCChhHHHH----------HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHH
Q 009096 214 CLSNMPKFEHYSPPSQVKF----------LVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRA 281 (543)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~ 281 (543)
.+++++...|.+....... ..+...+.++ ..|++++|+..|++++..+|+ +..++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~------------ 220 (368)
T 1fch_A 154 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ------------ 220 (368)
T ss_dssp HHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH------------
T ss_pred HHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH------------
Confidence 9999999999886544311 0001225555 899999999999999999999 56554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHhhhh
Q 009096 362 WSEAVRDYEALRRELPGD-----------NEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~l~~~~~ 398 (543)
+++|+.+|++++++.|++ ..++..++.+...+++...
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999999999999998 8899999988888876544
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.8e-29 Score=245.07 Aligned_cols=275 Identities=16% Similarity=0.097 Sum_probs=227.8
Q ss_pred HHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCC
Q 009096 68 LKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 68 ~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
+..+.+++...+.++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~---- 122 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL---- 122 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHH----
Confidence 345555555555554 459999999999999999999999999999999999999999999988888887766
Q ss_pred CCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC
Q 009096 144 HHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223 (543)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 223 (543)
+++++.+|.. ..++..+|.++...|++++|+..++++++..|
T Consensus 123 -------------------------------------~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 123 -------------------------------------QRCLELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp -------------------------------------HHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred -------------------------------------HHHHhcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 5556667766 78899999999999999999999999999888
Q ss_pred CCChhHHHH----HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHH
Q 009096 224 YSPPSQVKF----LVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEA 297 (543)
Q Consensus 224 ~~~~~~~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A 297 (543)
.+......+ ..+..+|.++...|++++|+..|++++..+|+ ++.++ ..+|.++...|++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ------------TGLGVLFHLSGEFNRA 232 (365)
T ss_dssp HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH------------HHHHHHHHHHTCHHHH
T ss_pred cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH------------HHHHHHHHHCCCHHHH
Confidence 764433221 22334488999999999999999999999999 66664 3479999999999999
Q ss_pred HHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 298 CSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 298 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+.+|++++++.|
T Consensus 233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C------------ChHHHHHHHHHHHHHHhh
Q 009096 378 G------------DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 378 ~------------~~~~~~~l~~~~~~l~~~ 396 (543)
+ +..++..+..+...+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp CC------------CHHHHHHHHHHHHHTCH
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 8 367788888877777654
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=239.50 Aligned_cols=275 Identities=13% Similarity=0.020 Sum_probs=243.6
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEE 107 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 107 (543)
....|...+++.+..+|.+...+..++.++...|++++|+..++++++.+|+++.+++.+|.++...| ++++|+..|++
T Consensus 37 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33457777888889999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
+++.+|+++.++..+|.++...|++++|+..| +++++..
T Consensus 117 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~ 155 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY-----------------------------------------FTAAQLM 155 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHT
T ss_pred HHHhCCccHHHHHHHHHHHHHccCHHHHHHHH-----------------------------------------HHHHHhc
Confidence 99999999999999999999988888887766 4555566
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC-----
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD----- 262 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----- 262 (543)
|.. ...+..+|.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++...
T Consensus 156 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 228 (330)
T 3hym_B 156 KGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228 (330)
T ss_dssp TTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred ccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence 665 456677899999999999999999999999998854 34455999999999999999999999876
Q ss_pred ----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 263 ----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 263 ----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
|....++ ..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++
T Consensus 229 ~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 229 EVTVDKWEPLL------------NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp SCTTTTCCHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred cccccHHHHHH------------HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444443 347999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHH-HHccCHH
Q 009096 339 LRIQPNYTKALLRRAVSN-EKLGRWS 363 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~-~~~g~~~ 363 (543)
++++|+++.++..+|.++ ...|+.+
T Consensus 297 l~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 5666654
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-27 Score=217.68 Aligned_cols=242 Identities=24% Similarity=0.377 Sum_probs=206.3
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hh
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-------NR 117 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 117 (543)
+..++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++.+|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3467889999999999999999999999999998 888999999999999999999999999999988766 45
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
++..+|.++...|++++|+..| ++++...|.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~-------- 111 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYY-----------------------------------------QKSLTEHRT-------- 111 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHCCC--------
T ss_pred HHHHHHHHHHHcccHHHHHHHH-----------------------------------------HHHHhcCch--------
Confidence 6666666666665555555544 333333322
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
+.++...|++++|+..+++++..+|.+..++
T Consensus 112 -----------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------- 142 (258)
T 3uq3_A 112 -----------------------------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEA-------- 142 (258)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH--------
T ss_pred -----------------------------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHH--------
Confidence 2346667888899999999999888877664
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 143 ----~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 143 ----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp ----HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcC------CCChHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRREL------PGDNEVAESLHNA 389 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 389 (543)
..|++++|+.+|+++++++ |++..++..+..+
T Consensus 219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999 9998888777654
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=9.1e-27 Score=217.29 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=199.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhc
Q 009096 92 LTALGRLTEAVSDCEEAVRLDPGY-NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKI 170 (543)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (543)
.+..|+|.+|+..+++....+|++ .++...++.+|..+|++++|+..++.. ++. ....+..++..+...
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~------~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAP------ELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCH------HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CCh------hHHHHHHHHHHHcCC
Confidence 344555555555555554444444 234455555555555555555554331 111 122344445555566
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcCh
Q 009096 171 GDWKTVLRETDAAIAI--GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRF 248 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 248 (543)
+++++|+..+++++.. +|++ +.++..+|.++...|++++|+..+++ |.+.. .+..+|.++..+|++
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~------~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE------CMAMTVQILLKLDRL 146 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH------HHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH------HHHHHHHHHHHCCCH
Confidence 6677777777887765 4666 78899999999999999999999998 55533 455559999999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
++|+..|+++++.+|++....... .....+...|++++|+..|+++++.+|+++.+++++|.++..+|++
T Consensus 147 ~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDATLTQLAT----------AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 999999999999999986443110 0123344569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHhcCCCChHHHHH
Q 009096 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSE-AVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~ 385 (543)
++|+..|+++++.+|++++++.++|.++...|++++ +.++++++++++|+++.+...
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999999999999999976 578999999999999998754
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=7.1e-27 Score=216.79 Aligned_cols=252 Identities=13% Similarity=0.011 Sum_probs=197.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR----AHQRL 122 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 122 (543)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.++. ++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999998 444433 36777
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.++...|++++|+..| +++++.+|.. ..++..+|.++
T Consensus 81 g~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~~-~~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQY-----------------------------------------QAAVDRDTTR-LDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHSTTC-THHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHH-----------------------------------------HHHHhcCccc-HHHHHHHHHHH
Confidence 77777766666665554 6667777776 67889999999
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
...|++++|+..++++++.+|.+... +..+|......+++++|+..|+++++.+|++...+ .
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~------------~ 180 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTTDPKV------FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY------------L 180 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------H
T ss_pred HHccCHHHHHHHHHHHhhcCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHH------------H
Confidence 99999999999999999999998554 44448444555699999999999999999997765 3
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHhccC---CCC-----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009096 283 TRGNNLFSSRR---YSEACSAYGEGLKYD---SYN-----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351 (543)
Q Consensus 283 ~~g~~~~~~~~---~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 351 (543)
.+|.++...++ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+.+|+++++++|+++.++-.
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 46888888888 888999999998875 432 2567777777777777777777777777777777777777
Q ss_pred HHHHHHHc
Q 009096 352 RAVSNEKL 359 (543)
Q Consensus 352 la~~~~~~ 359 (543)
++.+....
T Consensus 261 l~~~~~~~ 268 (272)
T 3u4t_A 261 LKMKLEHH 268 (272)
T ss_dssp HC------
T ss_pred hhhhhccc
Confidence 66665443
No 25
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=4.8e-27 Score=217.93 Aligned_cols=254 Identities=12% Similarity=-0.023 Sum_probs=219.4
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 67 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-------------- 67 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------------
Confidence 456789999999999999999999999999999999999999999999999999988886655411
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (543)
.++......+..+|.++...|++++|+..++++++.+|.+...+.. +|.
T Consensus 68 -------------------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------l~~ 116 (272)
T 3u4t_A 68 -------------------------NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ------IGS 116 (272)
T ss_dssp -------------------------CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH------HHH
T ss_pred -------------------------CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH------HHH
Confidence 1122335668889999999999999999999999999998765444 499
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAI 320 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 320 (543)
++...|++++|+..|+++++.+|.+..++. .+|...+..+++++|+..|+++++.+|++..++..+|.
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFY------------ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCSSCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhcCCCcHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 999999999999999999999999988753 46844555669999999999999999999999999999
Q ss_pred HHHHccC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 321 CWSKMGL---WENSIEDCNVALRIQ---PN-----YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 321 ~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
++..+|+ +++|+..|+++++.. |+ ...++..+|.++...|++++|+.+|+++++++|+++.++..+..+
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 9999999 999999999999886 44 237899999999999999999999999999999999999887765
Q ss_pred HH
Q 009096 390 QV 391 (543)
Q Consensus 390 ~~ 391 (543)
..
T Consensus 265 ~~ 266 (272)
T 3u4t_A 265 LE 266 (272)
T ss_dssp --
T ss_pred hc
Confidence 43
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=237.65 Aligned_cols=305 Identities=12% Similarity=0.036 Sum_probs=240.3
Q ss_pred cCCHHHHHHHHHHHHh----cCC--cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHH
Q 009096 61 KGNFVEALKLYDKAIS----MSP--ENAAYRSNRAATLTALGRLTEAVSDCEEAVRL---------DPGYNRAHQRLASL 125 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~ 125 (543)
.++.+.++..+++.+. ..+ .....+..+|.++..+|++++|+++|++++++ +|....+|.++|.+
T Consensus 24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 3445555555554443 222 23567889999999999999999999999986 56778889999999
Q ss_pred HHHhCCHHHHHHHhcCCCC----CCChHHHhHHHHHHHHHHHHHhh--hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH----HPDPNELLKLQSFEKHLNRCAES--RKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
|..+|++++|+.+|++++. ...+.. ......+...|..+ ...++|++|+.+|+++++++|++ +.++..++
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~ 179 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYR---IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLA 179 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSC---CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccc---hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 9999999999999988765 111100 00122344445444 44568999999999999999987 77888888
Q ss_pred HHHHH---ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 200 EAHLK---LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 200 ~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.++.. .++.++|+..++++++++|++......+. ...+.++...+++++|+..+++++..+|++..++
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~--~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~------- 250 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA--LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL------- 250 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH--HHHHHCC------CHHHHHHHHHHHHCSSCHHHH-------
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH-------
Confidence 87654 46778999999999999999866544431 1113344556789999999999999999999875
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-------------------cCHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-------------------GLWENSIEDCNV 337 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~ 337 (543)
..+|.++...|++++|+..|+++++.+|+++.++.++|.+|... +.+++|+..|++
T Consensus 251 -----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 251 -----RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34799999999999999999999999999999999999998653 347889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
++.++|.+..++..+|.++...|++++|+.+|+++++++|++....
T Consensus 326 a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 9999999999999999999999999999999999999999876543
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.6e-26 Score=206.34 Aligned_cols=213 Identities=19% Similarity=0.187 Sum_probs=176.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
.++..++. .. +.
T Consensus 81 ~~~~~~~~---------~~---------------------------------------------~~-------------- 92 (217)
T 2pl2_A 81 EAYVALYR---------QA---------------------------------------------ED-------------- 92 (217)
T ss_dssp HHHHHHHH---------TC---------------------------------------------SS--------------
T ss_pred HHHHHhhh---------hh---------------------------------------------hh--------------
Confidence 88765410 00 00
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
.....|++++|+..|+++++++|++..++ ..
T Consensus 93 -------------------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~------------~~ 123 (217)
T 2pl2_A 93 -------------------------------------RERGKGYLEQALSVLKDAERVNPRYAPLH------------LQ 123 (217)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHH------------HH
T ss_pred -------------------------------------hcccccCHHHHHHHHHHHHHhCcccHHHH------------HH
Confidence 01235889999999999999999999876 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWS 363 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 363 (543)
+|.++...|++++|+..|+++++++ +++.++.++|.++..+|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 7999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 009096 364 EAVRDYEALRR 374 (543)
Q Consensus 364 ~A~~~~~~al~ 374 (543)
+|+..|+++-.
T Consensus 203 ~A~~~~~~~~~ 213 (217)
T 2pl2_A 203 EAARAAALEHH 213 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=5.5e-26 Score=216.71 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=216.0
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
+...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------- 82 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR----------------- 82 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 356789999999999999999999999999999999999999999999999888888775544
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH-------
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL------- 233 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------- 233 (543)
+.+|.. ..++..+|.++...|++++|+..++++++..|.+......+.
T Consensus 83 ------------------------~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 83 ------------------------MLDPKD-IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp ------------------------HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred ------------------------hcCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 334443 445555566666666666666666666665555543322210
Q ss_pred HHHHH-HH-HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 234 VWLLK-LM-FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 234 ~~~~~-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
..... +. ++...|++++|+..++++++..|++..++ ..+|.++...|++++|+..++++++.+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH------------ASLGVLYNLSNNYDSAAANLRRAVELRPDD 205 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 00011 33 47889999999999999999999988765 347999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------------C
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG------------D 379 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~ 379 (543)
+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+ +
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 009096 380 NEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 380 ~~~~~~l~~~~~~l~~~~~ 398 (543)
+.++..++.+...+++...
T Consensus 286 ~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCCHHH
Confidence 8888888888777765443
No 29
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=228.59 Aligned_cols=309 Identities=13% Similarity=0.031 Sum_probs=239.5
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRL------DPG 114 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 114 (543)
+.....++.+|..++..|++++|+.+|+++++..|.++ .++..+|.++...|++++|+..+++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34677899999999999999999999999999999884 68899999999999999999999999887 344
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
...++..+|.++..+|++++|+.++++++. ...+. .++.....+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~ 129 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLD----------------------------------ISREL--NDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHH--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------------HHHhc--ccccchHHH
Confidence 577889999999999999999998876653 00000 000001335
Q ss_pred HHHHHHHHHHccC--------------------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHH
Q 009096 195 VACKAEAHLKLHQ--------------------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSS 254 (543)
Q Consensus 195 ~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 254 (543)
+..+|.++...|+ +++|+..+.+++...+...........+..+|.++...|++++|+..
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5666777777777 77777777776655443333344455677779999999999999999
Q ss_pred HHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCH
Q 009096 255 AEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLW 328 (543)
Q Consensus 255 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 328 (543)
+++++.+.|....... ....+..+|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++
T Consensus 210 ~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAA------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCcHH------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 9999977654332111 11224568999999999999999999999886655 67899999999999999
Q ss_pred HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHh
Q 009096 329 ENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD------NEVAESLHNAQVALKK 395 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~ 395 (543)
++|+..|++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.. ..+...++.+...++.
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99999999999885543 6789999999999999999999999999985433 4455555555555543
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.5e-24 Score=221.28 Aligned_cols=330 Identities=8% Similarity=-0.026 Sum_probs=244.2
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRA 118 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (543)
.++..+|.+...|..++.. ...|++++|...|+++++.+|.+..+|..++..+...|++++|...|++++...| +...
T Consensus 4 ~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~l 81 (530)
T 2ooe_A 4 KKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDL 81 (530)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHH
T ss_pred hHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHH
Confidence 3455667777777777663 5667777777777777777777777777777777777777777777777777666 3444
Q ss_pred HHHHH------------------------------------------HHHHH---------hCCHHHHHHHhcCCCCCCC
Q 009096 119 HQRLA------------------------------------------SLYFR---------LGQVENARHHLCFPGHHPD 147 (543)
Q Consensus 119 ~~~la------------------------------------------~~~~~---------~g~~~~A~~~~~~a~~~~~ 147 (543)
|..++ ..... .|++++|...|++++..|.
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 43333 33322 5778888899999887433
Q ss_pred hH---HHhHHHHHHH----------------HHHHHH--------------------------------------hhhh-
Q 009096 148 PN---ELLKLQSFEK----------------HLNRCA--------------------------------------ESRK- 169 (543)
Q Consensus 148 ~~---~~~~~~~~~~----------------~~~~~~--------------------------------------~~~~- 169 (543)
.. .+........ .+..+. ....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 21 1111100000 000000 0000
Q ss_pred -----cCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------ccChh-------HHHHHhhcCCC-CCCCC
Q 009096 170 -----IGDW----KTVLRETDAAIAIGVDSSPQLVACKAEAHLK-------LHQNE-------DADSCLSNMPK-FEHYS 225 (543)
Q Consensus 170 -----~~~~----~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~ 225 (543)
.++. +.++..|++++...|.+ +.+|..+|..+.. .|+++ +|+..|+++++ ..|++
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 1122 36778999999999877 8899999999886 79987 99999999997 78987
Q ss_pred ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH-HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009096 226 PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV-EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG 304 (543)
Q Consensus 226 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 304 (543)
... |...+.++...|++++|...|+++++..|.++ .+| ...|..+.+.|++++|+..|+++
T Consensus 321 ~~l------~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 321 MLL------YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY------------IQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHH------HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH------------HHHHHHHHHhcCHHHHHHHHHHH
Confidence 554 44458999999999999999999999999875 343 33688888899999999999999
Q ss_pred hccCCCChhHHhHHHHH-HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH--
Q 009096 305 LKYDSYNSILYCNRAIC-WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE-- 381 (543)
Q Consensus 305 l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 381 (543)
++..|.....+...+.+ +...|++++|+..|+++++.+|+++.+|..++.++...|+.++|...|++++...|.+++
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 99999888777776665 446999999999999999999999999999999999999999999999999999887766
Q ss_pred --HHHHHHHH
Q 009096 382 --VAESLHNA 389 (543)
Q Consensus 382 --~~~~l~~~ 389 (543)
++..+...
T Consensus 463 ~~lw~~~~~~ 472 (530)
T 2ooe_A 463 GEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 55444443
No 31
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.4e-26 Score=228.53 Aligned_cols=294 Identities=12% Similarity=0.027 Sum_probs=235.1
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CC
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRL------DP 113 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 113 (543)
++..+..++.+|..++..|++++|+..|+++++.+|+++ .++..+|.+|...|++++|+..|++++++ .|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 356778899999999999999999999999999999986 58999999999999999999999999988 56
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009096 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQ 193 (543)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 193 (543)
....++..+|.++..+|++++|+.+|++++. .+.+. . ++.....
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~-~-~~~~~~~ 167 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLT----------------------------------LARQL-G-DRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHH-T-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------HHHHh-h-chHHHHH
Confidence 6778899999999999999999998876643 00000 0 0001134
Q ss_pred HHHHHHHHHHHccC-----------------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 009096 194 LVACKAEAHLKLHQ-----------------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAE 256 (543)
Q Consensus 194 ~~~~~a~~~~~~~~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 256 (543)
++..+|.++...|+ +++|+..+++++...+...........+..+|.++...|++++|+.+++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 55666777777777 7777777776665543333333444567777999999999999999999
Q ss_pred HHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHH
Q 009096 257 KAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 257 ~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 330 (543)
+++.+.+....... ....+..+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++
T Consensus 248 ~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 248 ERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99987765332111 11224568999999999999999999999887644 6789999999999999999
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 331 SIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 331 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
|+.++++++.+.+.. ..++..+|.++..+|++++|+.+|++++++.+..
T Consensus 322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999885432 4689999999999999999999999999998653
No 32
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=1.4e-25 Score=216.03 Aligned_cols=226 Identities=13% Similarity=0.048 Sum_probs=199.4
Q ss_pred HHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC-HHHHHHHhcCCCCCCChHHHh
Q 009096 74 AISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ-VENARHHLCFPGHHPDPNELL 152 (543)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~ 152 (543)
++..+|++..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~------------- 155 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI------------- 155 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH-------------
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHH-------------
Confidence 5677889999999999999999999999999999999999999999999999988875 77666655
Q ss_pred HHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH
Q 009096 153 KLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF 232 (543)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 232 (543)
+++++++|++ ..
T Consensus 156 ----------------------------~~al~l~P~~-~~--------------------------------------- 167 (382)
T 2h6f_A 156 ----------------------------TAIIEEQPKN-YQ--------------------------------------- 167 (382)
T ss_dssp ----------------------------HHHHHHCTTC-HH---------------------------------------
T ss_pred ----------------------------HHHHHHCCCC-HH---------------------------------------
Confidence 5566666655 22
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
+|..+|.++..+|++++|+..|++++.++|++..+| ..+|.++...|++++|+.+|+++++++|++.
T Consensus 168 -a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~------------~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 168 -VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW------------QHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp -HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 344447777888888999999999999999999986 3479999999999999999999999999999
Q ss_pred hHHhHHHHHHHH-ccCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCChHHHH
Q 009096 313 ILYCNRAICWSK-MGLWENS-----IEDCNVALRIQPNYTKALLRRAVSNEKLG--RWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 313 ~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
.+|+++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|++.++++ +.+|+++.+..
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~ 313 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHH
Confidence 999999999999 5554788 59999999999999999999999999988 799999999998 99999999999
Q ss_pred HHHHHHHHHH
Q 009096 385 SLHNAQVALK 394 (543)
Q Consensus 385 ~l~~~~~~l~ 394 (543)
.++.+...++
T Consensus 314 ~La~~~~~~~ 323 (382)
T 2h6f_A 314 FLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887774
No 33
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=4.2e-26 Score=218.16 Aligned_cols=287 Identities=13% Similarity=0.037 Sum_probs=224.6
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CCCCh
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSDCEEAVRL------DPGYN 116 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 116 (543)
+...++..|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.+ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 46688999999999999999999999999999988 478889999999999999999999999887 34557
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC----CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH----HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP 192 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 192 (543)
.++..+|.++...|++++|+..+++++. ..++. . ..
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~-----------------------------------~~ 123 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-----G-----------------------------------EA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----H-----------------------------------HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-----H-----------------------------------HH
Confidence 7888999999999999999988876653 00000 0 12
Q ss_pred HHHHHHHHHHHHccC--------------------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHH
Q 009096 193 QLVACKAEAHLKLHQ--------------------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAV 252 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 252 (543)
.++..+|.++...|+ +++|+..+++++...+...........+..+|.++...|++++|+
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 345556666666666 666666666665543333233334456777799999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHcc
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMG 326 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g 326 (543)
..+++++...+...... .....+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|
T Consensus 204 ~~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKA------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp HHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 99999997755432211 111224568999999999999999999999886654 678999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 327 LWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 327 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++++|+..+++++.+.+.. ..++..+|.++...|++++|..+|++++++.+..
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999886542 4688999999999999999999999999997753
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=1.4e-23 Score=211.77 Aligned_cols=318 Identities=9% Similarity=-0.066 Sum_probs=205.7
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHh----cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH----cCCHHHHHHH
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYR----KGNFVEALKLYDKAISMSPENAAYRSNRAATLTA----LGRLTEAVSD 104 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 104 (543)
|...++++... .++.+++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..
T Consensus 62 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 137 (490)
T 2xm6_A 62 AMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKW 137 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44444444443 577888888888888 88888888888888765 467788888888887 7788888888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhh----cCCHHHH
Q 009096 105 CEEAVRLDPGYNRAHQRLASLYFR----LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK----IGDWKTV 176 (543)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A 176 (543)
|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++++..++. .++.++..+.. .+++++|
T Consensus 138 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~---------a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 138 FRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVW---------SCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH---------HHHHHHHHHhcCCCCCcCHHHH
Confidence 8888764 567788888888877 778888888888776643332 23344444444 4555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----ccChhHHHHHhhcCCCCCCCCChhHHHH--------------------
Q 009096 177 LRETDAAIAIGVDSSPQLVACKAEAHLK----LHQNEDADSCLSNMPKFEHYSPPSQVKF-------------------- 232 (543)
Q Consensus 177 ~~~~~~~l~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------------------- 232 (543)
+..|+++.+.+ .+..+..+|.+|.. .+++++|+..|+++.+..+ +.....+
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 55555555432 13444444544443 4445555555544443321 1111111
Q ss_pred ----------HHHHHHHHHHHhh-----cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC---CH
Q 009096 233 ----------LVWLLKLMFNISE-----LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR---RY 294 (543)
Q Consensus 233 ----------~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~ 294 (543)
.+++.+|.++... +++++|+.+|+++.+..+ +.+ +..+|.++...| ++
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a------------~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--ATA------------QANLGAIYFRLGSEEEH 347 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--HHH------------HHHHHHHHHHSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--HHH------------HHHHHHHHHhCCCcccH
Confidence 1222234444444 455555555555544322 222 244677777755 77
Q ss_pred HHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHH
Q 009096 295 SEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAV 366 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 366 (543)
++|+++|+++++. .++.+++++|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+
T Consensus 348 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 348 KKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 8888888888776 567888888888888 78888888888888875 367888888888887 78888888
Q ss_pred HHHHHHHhcCCC---ChHHHHHHHH
Q 009096 367 RDYEALRRELPG---DNEVAESLHN 388 (543)
Q Consensus 367 ~~~~~al~~~p~---~~~~~~~l~~ 388 (543)
.+|+++++.+|+ ++.+...++.
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 888888888854 6666555544
No 35
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=5.3e-23 Score=207.59 Aligned_cols=304 Identities=12% Similarity=0.006 Sum_probs=231.5
Q ss_pred cccCHHHHHHHhhHHHh----cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 009096 44 VAVDAEEVKRAGNEMYR----KGNFVEALKLYDKAISMSPENAAYRSNRAATLTA----LGRLTEAVSDCEEAVRLDPGY 115 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 115 (543)
.+.++++++.+|..+.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..|+++.+. .+
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 45689999999999999 89999999999999986 678999999999999 99999999999999875 58
Q ss_pred hhHHHHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhh----cCCHHHHHHHHHHHHHcC
Q 009096 116 NRAHQRLASLYFR----LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK----IGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 116 ~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~ 187 (543)
+.+++.+|.+|.. .+++++|+.+|+++....++ ..++.++..+.. .+++++|+..|+++++.+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRD---------SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8999999999999 89999999999998764433 346777887776 889999999999999873
Q ss_pred CCCCHHHHHHHHHHHHH----ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHHh
Q 009096 188 VDSSPQLVACKAEAHLK----LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKAG 259 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al 259 (543)
.+.++..+|.+|.. .+++++|+.+|+++.+.. ++. +++.+|.++.. .+++++|+.+|++++
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DEL------GQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHH------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 47889999999998 899999999999998753 322 44455888876 789999999999988
Q ss_pred hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-----cCHHH
Q 009096 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-----GLWEN 330 (543)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~ 330 (543)
+.. ++.+. ..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|... +++++
T Consensus 251 ~~~--~~~a~------------~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 251 EQG--NSIAQ------------FRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp TTT--CHHHH------------HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HCC--CHHHH------------HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 763 33332 235666655 66666666666666544 3455666666666665 66666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLG---RWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
|+.+|+++++. .++.+++++|.++...| ++++|+.+|+++++. +++.++..++.+..
T Consensus 315 A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 315 AISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL 374 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 66666666654 34566666666666544 566666666666655 45555555554443
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=2.1e-25 Score=207.12 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=203.3
Q ss_pred HhhHHHhcCCHHHHHHHHHHHHhc----CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 54 AGNEMYRKGNFVEALKLYDKAISM----SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
++..+...|++++|+..|+++++. +|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 444455678999999999999997 3567899999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChh
Q 009096 130 GQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNE 209 (543)
Q Consensus 130 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~ 209 (543)
|++++|+.+| +++++.+|.. ..++..+|.++...|+++
T Consensus 91 ~~~~~A~~~~-----------------------------------------~~al~~~~~~-~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 91 GNFDAAYEAF-----------------------------------------DSVLELDPTY-NYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp TCHHHHHHHH-----------------------------------------HHHHHHCTTC-THHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHH-----------------------------------------HHHHhcCccc-cHHHHHHHHHHHHhccHH
Confidence 8888887766 4455566665 567778888888888888
Q ss_pred HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH
Q 009096 210 DADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289 (543)
Q Consensus 210 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~ 289 (543)
+|+..++++++..|++...... ..+....|++++|+..+++++...|++...+ .++..+.
T Consensus 129 ~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 188 (275)
T 1xnf_A 129 LAQDDLLAFYQDDPNDPFRSLW-------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-------------NIVEFYL 188 (275)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-------------HHHHHHT
T ss_pred HHHHHHHHHHHhCCCChHHHHH-------HHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-------------HHHHHHH
Confidence 8888888888888877432221 2234667899999999999998888876553 2567788
Q ss_pred hcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
..+++++|+..+++++...|.. +.++..+|.++...|++++|+..|++++..+|++... .+.++..+|++++|
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQD 265 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhh
Confidence 8888999999999998887643 6889999999999999999999999999999977544 37788899999999
Q ss_pred HHHH
Q 009096 366 VRDY 369 (543)
Q Consensus 366 ~~~~ 369 (543)
++.+
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 8887
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=7.1e-24 Score=197.69 Aligned_cols=280 Identities=13% Similarity=0.043 Sum_probs=223.9
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q 009096 55 GNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVE 133 (543)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (543)
...++..|+|++|+..+++....+|++ .++...++.+|+.+|++++|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 345677888899988888887777776 45778888888888988888887765 25556777888888888888888
Q ss_pred HHHHHhcCCCCC-CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH
Q 009096 134 NARHHLCFPGHH-PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD 212 (543)
Q Consensus 134 ~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 212 (543)
+|+..+++++.. .+|.. ...++.+|..+...|++++|+..+++ |.+ ..++..+|.++..+|++++|+
T Consensus 83 ~A~~~l~~ll~~~~~P~~------~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTN------TTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSC------HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCC------HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 888888887642 12221 12367778888888899999888887 444 788899999999999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 009096 213 SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292 (543)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~ 292 (543)
..++++++.+|++...... .+| ..++...|++++|+..|++++..+|+++.++ ..+|.++...|
T Consensus 151 ~~l~~~~~~~p~~~~~~l~-~a~---~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~------------~~la~~~~~~g 214 (291)
T 3mkr_A 151 KELKKMQDQDEDATLTQLA-TAW---VSLAAGGEKLQDAYYIFQEMADKCSPTLLLL------------NGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHH-HHH---HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH------------HHHHHHHHHTT
T ss_pred HHHHHHHhhCcCcHHHHHH-HHH---HHHHhCchHHHHHHHHHHHHHHhCCCcHHHH------------HHHHHHHHHcC
Confidence 9999999998886321111 122 2344466999999999999999999998875 34799999999
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN-SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
++++|+..|+++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+. ....+.+.|+++..-|
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999976 5789999999999999765 3456666677766654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=3.5e-24 Score=191.09 Aligned_cols=186 Identities=12% Similarity=0.044 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+..+..+|.++...|++++|+..|+++++.+|+++..+ ..+|.++...|++++|+..|+++++++|++..++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~- 77 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEAL------YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM- 77 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-
Confidence 56788899999999999999999999999999996644 44499999999999999999999999999998863
Q ss_pred HHhHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 272 LTNVKMVVRARTRGNNLFSS-----------RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+|.++... |++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++
T Consensus 78 -----------~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 78 -----------VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp -----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 478899999 9999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
++ +++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.+...+++.
T Consensus 147 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 147 LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----
T ss_pred cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 99 99999999999999999999999999999999999999998888776666543
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=8.9e-23 Score=189.28 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=185.8
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA----LGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
+|.++.+++.+|..+...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467889999999999999999999999999998 7788999999999999 999999999999999875 78888
Q ss_pred HHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 120 QRLASLYFR----LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 120 ~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
+.+|.++.. .+++++|+.+|+ ++++.+ .+.++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~-----------------------------------------~a~~~~---~~~a~ 113 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYS-----------------------------------------KACDLK---YAEGC 113 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHH-----------------------------------------HHHHTT---CHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHH-----------------------------------------HHHHcC---CccHH
Confidence 889988887 777766666653 333321 13333
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+ |.++.. .+++++|+.+|+++++.. +..++
T Consensus 114 ~~l----------------------------------------g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~-- 149 (273)
T 1ouv_A 114 ASL----------------------------------------GGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGC-- 149 (273)
T ss_dssp HHH----------------------------------------HHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHH--
T ss_pred HHH----------------------------------------HHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHH--
Confidence 433 455555 667777777777777765 23332
Q ss_pred HHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCC
Q 009096 272 LTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 343 (543)
..+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..|
T Consensus 150 ----------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 150 ----------TILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp ----------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 347888888 89999999999999887 457889999999999 9999999999999998865
Q ss_pred CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHH
Q 009096 344 NYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 344 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+.+++.+|.++.. .+++++|+.+|++++++.|++...
T Consensus 218 --~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 218 --GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp --HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred --HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999 999999999999999998865443
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=2.4e-23 Score=189.32 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=62.9
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999988888888777777
Q ss_pred HHHhCCHHHHHHHh
Q 009096 126 YFRLGQVENARHHL 139 (543)
Q Consensus 126 ~~~~g~~~~A~~~~ 139 (543)
+...|++++|+..|
T Consensus 101 ~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 101 YVVKEMYKEAKDMF 114 (243)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 77777666666554
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.2e-23 Score=182.65 Aligned_cols=173 Identities=15% Similarity=0.139 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+.+|+.+|.++...|++++|+..|+++++.+|++... +..+|.++...|++++|+..+.+++...|++..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET------LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 36788999999999999999999999999999998554 445599999999999999999999999999988763
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
.+|.++...++++.|+..+.+++..+|++..++..+|.++..+|++++|+..|+++++++|+++.+++
T Consensus 78 ------------~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 145 (184)
T 3vtx_A 78 ------------ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145 (184)
T ss_dssp ------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++|.++..+|++++|+.+|+++++++|+++.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999997654
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=5.8e-22 Score=177.72 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=149.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+|.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666555555555
Q ss_pred HHHHHh-CCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 124 SLYFRL-GQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 124 ~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
.++... |++++|+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~--------------------------------------------------------------- 100 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYF--------------------------------------------------------------- 100 (225)
T ss_dssp HHHHTTTCCHHHHHHHH---------------------------------------------------------------
T ss_pred HHHHHhcCcHHHHHHHH---------------------------------------------------------------
Confidence 555554 4444444433
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~ 280 (543)
++++. ..|.+..++
T Consensus 101 -----------------------------------------------------~~~~~~~~~~~~~~~~----------- 116 (225)
T 2vq2_A 101 -----------------------------------------------------DKALADPTYPTPYIAN----------- 116 (225)
T ss_dssp -----------------------------------------------------HHHHTSTTCSCHHHHH-----------
T ss_pred -----------------------------------------------------HHHHcCcCCcchHHHH-----------
Confidence 33333 223333332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP-NYTKALLRRAVSNEKL 359 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 359 (543)
..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..+++++...| ++..++..++.++...
T Consensus 117 -~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 117 -LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 23577777888888888888888888888888888888888888888888888888888888 8888888888888888
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 360 GRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 360 g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
|++++|..+++.+++.+|+++.+...+
T Consensus 196 ~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 888888888888888888888776544
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=1.4e-23 Score=190.83 Aligned_cols=215 Identities=10% Similarity=0.056 Sum_probs=181.9
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
...++.+|..+...|++++|+..++++++.+|.. ..++..+|.++...|++++|+..++++++..|.+.. .+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~ 95 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFYDKALELDSSAAT------AYY 95 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH------HHH
Confidence 4457788999999999999999999999999887 788999999999999999999999999999998754 344
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHh
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYC 316 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 316 (543)
.+|.++...|++++|+..++++++..|++..++ ..+|.++...|++++|+..++++++..|+++.++.
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 163 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF------------YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF 163 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH
Confidence 559999999999999999999999999998765 34799999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 317 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+..+.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987766543
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=3.9e-23 Score=206.73 Aligned_cols=223 Identities=19% Similarity=0.168 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCC
Q 009096 64 FVEALKLYDKAISMSPENAAYRSNRAATLTALGRL-TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (543)
+++|+..+.++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.+|..+|.+|..+|++++|+.+|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~--- 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF--- 160 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH---
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---
Confidence 55566666666666677777777777777777777 77777777777777777777777777776666666665554
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC
Q 009096 143 GHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE 222 (543)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 222 (543)
+++++.+|+ ..++..+|.++...+.
T Consensus 161 --------------------------------------~~al~~~p~--~~~~~~lg~~~~~~~~--------------- 185 (474)
T 4abn_A 161 --------------------------------------SGALTHCKN--KVSLQNLSMVLRQLQT--------------- 185 (474)
T ss_dssp --------------------------------------HHHHTTCCC--HHHHHHHHHHHTTCCC---------------
T ss_pred --------------------------------------HHHHhhCCC--HHHHHHHHHHHHHhcc---------------
Confidence 333444443 2344444444433211
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc--------CCH
Q 009096 223 HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS--------RRY 294 (543)
Q Consensus 223 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~--------~~~ 294 (543)
+......|++++|+..|+++++++|++..++. .+|.++... |++
T Consensus 186 ----------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 186 ----------------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY------------ILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHTTCCHHHH
T ss_pred ----------------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHHHHhhccccchH
Confidence 00112238999999999999999999988763 478888888 999
Q ss_pred HHHHHHHHHHhccCC---CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDS---YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 295 ~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
++|+..|+++++++| +++.+|+++|.+|..+|++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999987765
Q ss_pred H
Q 009096 372 L 372 (543)
Q Consensus 372 a 372 (543)
.
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.9e-22 Score=190.37 Aligned_cols=270 Identities=10% Similarity=-0.067 Sum_probs=182.0
Q ss_pred cCHHHHHHHhhHHHhc----CCH----HHHHHHHHHHHhcCCcchhhHHhHHHHHHH-------cCCH-------HHHHH
Q 009096 46 VDAEEVKRAGNEMYRK----GNF----VEALKLYDKAISMSPENAAYRSNRAATLTA-------LGRL-------TEAVS 103 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~ 103 (543)
.....|......-... ++. ++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+.
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3445555555544332 233 789999999999999999999999998874 5886 89999
Q ss_pred HHHHHHh-cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 104 DCEEAVR-LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 104 ~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
.|+++++ ++|++..+|..+|.++...|++++|...| ++
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~-----------------------------------------~~ 124 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY-----------------------------------------NR 124 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHH-----------------------------------------HH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH-----------------------------------------HH
Confidence 9999999 69999999999998888877777776665 45
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH-hhcChHHHHHHHHHHhhc
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI-SELRFENAVSSAEKAGLL 261 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~ 261 (543)
+++..|.+...+|..++.++...|++++|+..|+++++..|.....+. ..+.+.. ..|++++|...|+++++.
T Consensus 125 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 125 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV------TAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH------HHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555556553336777777777777777777777777777776533222 2233322 257777777777777777
Q ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-ChhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 262 DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY---DSY-NSILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+|+++.++. .+|..+...|++++|+..|++++.. .|+ ...+|..++..+...|++++|...+++
T Consensus 199 ~p~~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 199 YGDIPEYVL------------AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HTTCHHHHH------------HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCcHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766642 2466667777777777777777764 342 456677777777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+++..|++..... .+.+ ..-.+.+.++|+++.....|
T Consensus 267 a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 267 RFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp HHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred HHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhc
Confidence 7777776443221 1111 11115566677777665544
No 46
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.91 E-value=8.4e-24 Score=162.73 Aligned_cols=101 Identities=25% Similarity=0.390 Sum_probs=93.1
Q ss_pred EEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 411 EEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 411 ~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.+.|.+.+. .+++++++||++||++|+.+.|.++++++.++++.|++||++++++++++|+|.++||+++|+|
T Consensus 3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~ 82 (105)
T 3zzx_A 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEEC
Confidence 45667778888774 3679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHhcC
Q 009096 489 GEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 489 g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+++.++.|.++++|.++|++++
T Consensus 83 G~~v~~~~G~~~~~l~~~i~k~K 105 (105)
T 3zzx_A 83 GQKLDSLSGANYDKLLELVEKNK 105 (105)
T ss_dssp TEEEEEEESCCHHHHHHHHHHHC
T ss_pred CEEEEEEeCcCHHHHHHHHHhcC
Confidence 99999999999999999999763
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=1e-24 Score=214.55 Aligned_cols=294 Identities=15% Similarity=0.067 Sum_probs=230.2
Q ss_pred cCCCCCCCCccccccccC----HHHHHHHhhHHHhcCCHHHHHHHHHHHHhc------CCcchhhHHhHHHHHHHcCCHH
Q 009096 30 SNINNNNNNVKTSNVAVD----AEEVKRAGNEMYRKGNFVEALKLYDKAISM------SPENAAYRSNRAATLTALGRLT 99 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 99 (543)
...|...+++++...|.+ +..+..+|.+++..|++++|+.+|++++.. .|....++..+|.++...|+++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 345677777777778877 468899999999999999999999999887 3455789999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCC--------------------HHHHHHHhcCCCCCCChHHHhH
Q 009096 100 EAVSDCEEAVRLDPGY------NRAHQRLASLYFRLGQ--------------------VENARHHLCFPGHHPDPNELLK 153 (543)
Q Consensus 100 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a~~~~~~~~~~~ 153 (543)
+|+..+++++++.|.. ..++..+|.++...|+ +++|+..+.+++.
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~--------- 175 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS--------- 175 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH---------
Confidence 9999999999987654 4589999999999999 6666665544321
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH
Q 009096 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL 233 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 233 (543)
.+.+. .++.....++..+|.++...|++++|+..++++++..+..........
T Consensus 176 -------------------------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 176 -------------------------LVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp -------------------------HHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------HHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 00000 001111345677888888888888888888888877776655555566
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-- 311 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-- 311 (543)
.+..+|.++...|++++|+..+++++.+.|...... .....+..+|.++...|++++|+.+|+++++..+..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 778889999999999999999999997765432111 012224568999999999999999999999875443
Q ss_pred ----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHccCHHHH
Q 009096 312 ----SILYCNRAICWSKMGLWENSIEDCNVALRIQP------NYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 312 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A 365 (543)
..++..+|.++..+|++++|+.+|++++++.+ ....++..+|.++...|+...+
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 67899999999999999999999999998843 3367899999999999987543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=3.6e-22 Score=182.73 Aligned_cols=211 Identities=14% Similarity=0.013 Sum_probs=194.7
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
...++.+|..+...|++++|+..++++++.+|.. ..++..+|.++...|++++|+..++++++..|.+.. .+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR------VLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH------HHH
Confidence 5668889999999999999999999999999887 788999999999999999999999999999998744 344
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 237 LKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
.+|.++...|++++|+..+++++. ..|.+..++ ..+|.++...|++++|+..|+++++..|.+..+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF------------ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHH
Confidence 559999999999999999999999 777766654 347999999999999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+..+|.++...|++++|+..++++++..|++..++..++.++...|++++|..++++++++.|+++.+...+
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887544
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=7.1e-22 Score=180.76 Aligned_cols=219 Identities=14% Similarity=0.036 Sum_probs=181.7
Q ss_pred cccccC-HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNVAVD-AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
..+|.+ +..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 455665 8889999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.+|.++...|++++|+..|+++ +. .+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~-----------------------------------------~~-~~------------ 135 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEA-----------------------------------------SQ-DT------------ 135 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------------------------------------TT-CT------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHH-----------------------------------------Hh-Cc------------
Confidence 8888887777777776665332 22 01
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
..|.+ ...+..+|.++...|++++|+..+++++...|.+..++
T Consensus 136 --------------------~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------- 178 (252)
T 2ho1_A 136 --------------------LYPER------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA----------- 178 (252)
T ss_dssp --------------------TCTTH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH-----------
T ss_pred --------------------cCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHH-----------
Confidence 12222 12344458888889999999999999999999887765
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
..+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|...++++++..|+++.+...+
T Consensus 179 -~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 179 -LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999998776543
No 50
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=1.3e-22 Score=198.03 Aligned_cols=315 Identities=10% Similarity=-0.073 Sum_probs=244.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC---cchhhH--HhH--HHHHHHcCCHHHHH-----------HHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP---ENAAYR--SNR--AATLTALGRLTEAV-----------SDC 105 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~ 105 (543)
.+......++....++..+++++|...++++.+.-+ .+.... +.+ .......++++.+. +.+
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 445667777888888999999999999999866422 233332 222 22333344555554 555
Q ss_pred HHHHhcCCCChh------HHHHHHHHHHHhCCHHHHHHHhcCCCCC----CChHHHhHHHHHHHHHHHHHhhhhcCCHHH
Q 009096 106 EEAVRLDPGYNR------AHQRLASLYFRLGQVENARHHLCFPGHH----PDPNELLKLQSFEKHLNRCAESRKIGDWKT 175 (543)
Q Consensus 106 ~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (543)
++.- ..|.... .++.+|.++...|++++|+..|++++.. +++. .....+..+|.++...|++++
T Consensus 88 ~~i~-~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~a~~~~~lg~~~~~~~~~~~ 161 (383)
T 3ulq_A 88 LEID-KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI-----EKAEFFFKMSESYYYMKQTYF 161 (383)
T ss_dssp HHHH-HHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHH-hcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-----HHHHHHHHHHHHHHHcCCHHH
Confidence 5532 2333333 3445999999999999999999999872 2222 345678999999999999999
Q ss_pred HHHHHHHHHHcCCCCC------HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 176 VLRETDAAIAIGVDSS------PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
|+..+.++++..+... ..++..+|.++..+|++++|+..++++++..+..........++.++|.++...|+++
T Consensus 162 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999999855442 3578889999999999999999999999988777666666677888899999999999
Q ss_pred HHHHHHHHHhhc-----C-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----CCChhHHhHH
Q 009096 250 NAVSSAEKAGLL-----D-YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD-----SYNSILYCNR 318 (543)
Q Consensus 250 ~A~~~~~~al~~-----~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l 318 (543)
+|+.+|++++.+ + |....+ +..+|.++...|++++|+.++++++++. |.....+..+
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQA------------YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999984 4 444333 2458999999999999999999999874 3334446779
Q ss_pred HHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 319 AICWSKMGL---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 319 a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|..+|++++++..
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999 88888888876 33445567899999999999999999999999998754
No 51
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.1e-21 Score=197.96 Aligned_cols=303 Identities=11% Similarity=-0.035 Sum_probs=232.5
Q ss_pred HHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 71 YDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|++++. .|+..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 678999999999999999984 7899999999999999999999999999999999999999999999999998 55544
Q ss_pred HHhHHHH---------------HHHHH------------------HHHHhhh---------hcCCHHHHHHHHHHHHHcC
Q 009096 150 ELLKLQS---------------FEKHL------------------NRCAESR---------KIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 150 ~~~~~~~---------------~~~~~------------------~~~~~~~---------~~~~~~~A~~~~~~~l~~~ 187 (543)
.+..... +...+ ..+.... ..|+++.|...|+++++ .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 3322211 00111 1111111 26789999999999998 4
Q ss_pred CCCCH-HHHHHHHHHH-------------HHccChhHHH-----------------------------------------
Q 009096 188 VDSSP-QLVACKAEAH-------------LKLHQNEDAD----------------------------------------- 212 (543)
Q Consensus 188 p~~~~-~~~~~~a~~~-------------~~~~~~~~A~----------------------------------------- 212 (543)
|.... ..+....... ...+++.+|.
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 65432 2222111110 0122333343
Q ss_pred -------------------HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh-------hcChH-------HHHHHHHHHh
Q 009096 213 -------------------SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS-------ELRFE-------NAVSSAEKAG 259 (543)
Q Consensus 213 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~g~~~-------~A~~~~~~al 259 (543)
..|++++...|.++. .|+..|..+.. .|+++ +|+..|++++
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~------~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPD------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 344444444444433 34444777765 68887 8999999999
Q ss_pred h-cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh-hHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 260 L-LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS-ILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 260 ~-~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+ ..|++..++. .+|..+...|++++|...|+++++..|.++ .+|..+|.++.+.|++++|+..|++
T Consensus 314 ~~~~p~~~~l~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 314 STLLKKNMLLYF------------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp TTTCSSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7 7999888764 368889999999999999999999999985 6999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVS-NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
+++..|.....+...+.+ +...|++++|...|+++++.+|+++.++..+......+
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 999999888888877766 34689999999999999999999999998777665443
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.7e-22 Score=183.09 Aligned_cols=221 Identities=13% Similarity=0.034 Sum_probs=199.3
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCC-hhHHHHHH
Q 009096 156 SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP-PSQVKFLV 234 (543)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~ 234 (543)
....+..+|..+...|++++|+..++++++.+ ..+.++..+|.++...|++++|+..++++++..|.+. ........
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999998 4478899999999999999999999999999888763 22222456
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
+..+|.++...|++++|+..|++++.+.|. +.++...|++++|+..+++++..+|.++.+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence 777799999999999999999999999887 234667788999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.+...++
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888887776
Q ss_pred hhhh
Q 009096 395 KSRG 398 (543)
Q Consensus 395 ~~~~ 398 (543)
+...
T Consensus 222 ~~~~ 225 (258)
T 3uq3_A 222 EYAS 225 (258)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 5443
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=2.1e-22 Score=174.75 Aligned_cols=174 Identities=17% Similarity=0.096 Sum_probs=150.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
+++..|+.+|.++...|+|++|+..|+++++++|+++.++..+|.+|...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009096 126 YFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL 205 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~ 205 (543)
+...++++.|...+ .+++...|.+ ..++..+|.++..+
T Consensus 83 ~~~~~~~~~a~~~~-----------------------------------------~~a~~~~~~~-~~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 83 NFMIDEKQAAIDAL-----------------------------------------QRAIALNTVY-ADAYYKLGLVYDSM 120 (184)
T ss_dssp HHHTTCHHHHHHHH-----------------------------------------HHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHH-----------------------------------------HHHHHhCccc-hHHHHHHHHHHHHh
Confidence 98888887777665 4555666665 67777888888888
Q ss_pred cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 206 HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 206 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|++++|+..|+++++.+|.++. ++..+|.++..+|++++|+..|+++++++|+++.
T Consensus 121 g~~~~A~~~~~~~l~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIKPGFIR------AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCchhHHHHHHHHHHhcchhhh------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 8888888888888888888754 3444488888889999999999999888887654
No 54
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=99.90 E-value=7.8e-24 Score=167.35 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=90.7
Q ss_pred hhhhhhhccCCCCceeeeeeCCC--CccccchhHhHHHHHhhCC-C-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEAS--SEKCEEISPFVNLLCVRYP-Y-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~-~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|++.+..+++++|+||++| |++|+++.|.|++++++|+ . ++|++||+|++++++.+|||+++||+++|+||+
T Consensus 23 t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~ 102 (140)
T 2qgv_A 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGN 102 (140)
T ss_dssp CHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTE
T ss_pred CHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 34667776667889999999999 9999999999999999996 4 899999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
++.+++|+ +++++.++|++++..+..
T Consensus 103 ~v~~~~G~~~k~~l~~~i~~~l~~~~~ 129 (140)
T 2qgv_A 103 YRGVLNGIHPWAELINLMRGLVEPQQE 129 (140)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHC----
T ss_pred EEEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 99999999 999999999988754433
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=8.8e-23 Score=189.36 Aligned_cols=235 Identities=10% Similarity=-0.083 Sum_probs=191.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHH
Q 009096 87 NRAATLTALGRLTEAVSDCEEAVRLD----PGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLN 162 (543)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 162 (543)
.++..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~------------------------ 65 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND------------------------ 65 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH------------------------
T ss_pred ceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHH------------------------
Confidence 33444455677888888888888763 34456666666666666666655554
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHH
Q 009096 163 RCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFN 242 (543)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (543)
++++++.+|.. ..++..+|.++...|++++|+..|+++++.+|.+...+ ..+|.++
T Consensus 66 -----------------~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~la~~~ 121 (275)
T 1xnf_A 66 -----------------FSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH------LNRGIAL 121 (275)
T ss_dssp -----------------HHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH------HHHHHHH
T ss_pred -----------------HHHHHHcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH------HHHHHHH
Confidence 46677777776 78899999999999999999999999999999986644 4449999
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW 322 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 322 (543)
...|++++|+..|+++++.+|++...... .......|++++|+..+++++...|.+...+. ++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLW-------------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFY 187 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------------HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHH-------------HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHH
Confidence 99999999999999999999999865422 22346679999999999999999998876654 78888
Q ss_pred HHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 323 SKMGLWENSIEDCNVALRIQPN----YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
...++.++|+..+++++...|. ++.+++.+|.++...|++++|+.+|+++++++|++....
T Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 8899999999999999988774 378999999999999999999999999999999886644
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=1.5e-21 Score=175.78 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=91.2
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+.+++.++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45779999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCC
Q 009096 124 SLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a 142 (543)
.++..+|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHH
Confidence 9999998888888776443
No 57
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=99.89 E-value=2.2e-23 Score=164.13 Aligned_cols=99 Identities=10% Similarity=0.146 Sum_probs=89.8
Q ss_pred EeehhhhhhhccCCC-CceeeeeeCCCC--ccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 412 EISSLEKFKAAISSP-GVSLVHFKEASS--EKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 412 ~~~~~~~~~~~i~~~-~~~lv~f~~~~c--~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
.+++ +.|++.+... ++++|+||++|| ++|+++.|.+++++++|++ ++|++||+|++++++.+|||+++||+++|+
T Consensus 19 ~vt~-~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFk 97 (137)
T 2qsi_A 19 LVDE-ATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQ 97 (137)
T ss_dssp EECT-TTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEE
T ss_pred ccCH-hHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 3444 6666666454 499999999999 9999999999999999975 999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
||+++.+++|+ +++++.++|++++
T Consensus 98 dG~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 98 PERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999 9999999999876
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=2.6e-22 Score=199.44 Aligned_cols=304 Identities=13% Similarity=-0.010 Sum_probs=179.5
Q ss_pred HHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 53 RAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRL---TEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.+|..+++.|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 4566667777777777777776554 3566667777777766666 6777777777654 556667777755555
Q ss_pred C-----CHHHHHHHhcCCCCCCChHHHhHHH--------------------------HHHHHHHHHHhhhhcCCHHHHHH
Q 009096 130 G-----QVENARHHLCFPGHHPDPNELLKLQ--------------------------SFEKHLNRCAESRKIGDWKTVLR 178 (543)
Q Consensus 130 g-----~~~~A~~~~~~a~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~A~~ 178 (543)
+ ++++|+.+|++++...++.....+. .....+.++..+...+.+++++.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 4 6667777776665522222111110 11234555666666665544444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcc---ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh----cChHHH
Q 009096 179 ETDAAIAIGVDSSPQLVACKAEAHLKLH---QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE----LRFENA 251 (543)
Q Consensus 179 ~~~~~l~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----g~~~~A 251 (543)
......+......+.+++.+|.+|...| ++++|+..|+++.+..+...... +.+|.+|... +++++|
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~------~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV------DSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH------HHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCCCCCCCCHHHH
Confidence 4333332222222347777888888888 78888888888887777763322 3336666555 678888
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHcc--
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN-L--FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG-- 326 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 326 (543)
+.+|+++. |+++.++ +++|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .|
T Consensus 237 ~~~~~~aa---~g~~~a~------------~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 237 QALLEKIA---PGYPASW------------VSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HHHHHHHG---GGSTHHH------------HHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred HHHHHHHc---CCCHHHH------------HHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 88888876 6666664 335766 3 4577888888888887754 46778888888887 45
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 327 ---LWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 327 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
++++|+.+|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+. .++.+...|+.+.
T Consensus 299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF 364 (452)
T ss_dssp SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 8888888888887 7788888888877776 34788888888888764 4556655565543
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=2.6e-21 Score=182.56 Aligned_cols=239 Identities=12% Similarity=-0.004 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHH
Q 009096 99 TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLR 178 (543)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (543)
++|+..|++++..+|+++.+|+.+|..+...++. + ...+......+.+++|+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~------l---------------------~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL------L---------------------AEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------H---------------------HHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh------h---------------------hhccchhhcccchHHHHH
Confidence 7899999999999999999999999998765321 0 000000011233478899
Q ss_pred HHHHHHH-cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 179 ETDAAIA-IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 179 ~~~~~l~-~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
.|+++++ +.|++ ..+|..+|.++...|++++|...|+++++..|.+... .|...|.++...|++++|...|++
T Consensus 86 ~~~rAl~~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 86 IYERAISTLLKKN-MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-----VYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHTTTTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH-----HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhCccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccH-----HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999 67776 7889999999999999999999999999999988641 445558999999999999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLF-SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCN 336 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 336 (543)
+++..|.+..++. ..+.... ..|++++|+..|+++++.+|+++.+|..+|..+...|++++|+..|+
T Consensus 160 a~~~~p~~~~~~~------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 160 AREDARTRHHVYV------------TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHTSTTCCTHHHH------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhcCCCCHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998876652 1233322 37999999999999999999999999999999999999999999999
Q ss_pred HHHhh---CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 337 VALRI---QPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 337 ~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+++.. .|+ ...+|..++..+...|++++|...++++++..|++...
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 99995 553 78899999999999999999999999999999986644
No 60
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=99.89 E-value=1.2e-23 Score=167.71 Aligned_cols=105 Identities=10% Similarity=0.130 Sum_probs=95.5
Q ss_pred eEEeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+.+...|++.+ ..+++++|+||++||+||+++.|.|+++++++++ +.|++||+|++++++.+|+|+++||+++|
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 56678888888776 4688999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ECCeEE--E-------EEcCC-C-HHHHHHHHHhcCCCC
Q 009096 487 KNGEKL--K-------EMINP-S-HQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~--~-------~~~g~-~-~~~~~~~~~~~~~~~ 514 (543)
++|+.+ + +++|+ + +++|.++|+.+....
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 999998 5 89998 5 999999999876444
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=2.8e-22 Score=180.47 Aligned_cols=216 Identities=7% Similarity=0.028 Sum_probs=179.0
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..++..|..+...|++++|+..|+++++.+|......++.+|.++...|++++|+..++++++.+|.+.. .+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~ 81 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------AYIG 81 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH------HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH------HHHH
Confidence 5678889999999999999999999999988344677777999999999999999999999999888644 4455
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--ChhHH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY--NSILY 315 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~ 315 (543)
+|.++...|++++|+..|+++++.+|+++.....+ +..+..+|.++...|++++|+..|+++++.+|+ ++.++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY-----AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH-----HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 59999999999999999999999999988765433 335778899999999999999999999999999 88999
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.++|.+|...| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++|+++.+...+..+..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999997655 445677777777765444 4555667788999999999999999999999888876643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=6.2e-22 Score=198.01 Aligned_cols=207 Identities=12% Similarity=0.036 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCh-hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHH
Q 009096 172 DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQN-EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFEN 250 (543)
Q Consensus 172 ~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 250 (543)
.+++++..+++.....|.. ..+++.+|.++...|++ ++|+..|+++++.+|++.. ++..+|.++...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~~-a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVE-AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE------AWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCchh-HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHH
Confidence 4567777888877777655 88999999999999999 9999999999999999855 45555999999999999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhccCCCChhHHhHHHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS---------RRYSEACSAYGEGLKYDSYNSILYCNRAIC 321 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 321 (543)
|+..|+++++++|+ ..++ ..+|.++... |++++|+..|+++++++|+++.+|+++|.+
T Consensus 156 A~~~~~~al~~~p~-~~~~------------~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSL------------QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHH------------HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-HHHH------------HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999 4443 3479999999 999999999999999999999999999999
Q ss_pred HHHc--------cCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 322 WSKM--------GLWENSIEDCNVALRIQP---NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 322 ~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
|..+ |++++|+..|+++++++| +++.+|+++|.++..+|++++|+..|+++++++|+++.++..+..+.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999 999999999999999999 99999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhh
Q 009096 391 VALKKSRG 398 (543)
Q Consensus 391 ~~l~~~~~ 398 (543)
..+++...
T Consensus 303 ~~lg~~~e 310 (474)
T 4abn_A 303 EFLSRLTS 310 (474)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=2e-22 Score=198.75 Aligned_cols=272 Identities=12% Similarity=0.005 Sum_probs=208.3
Q ss_pred CcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHH
Q 009096 79 PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN----RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL 154 (543)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 154 (543)
+.....++.+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------- 114 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT---------- 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------
Confidence 44567788999999999999999999999999999986 5889999999999999999999876643
Q ss_pred HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 155 QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
...+. . ++.....++..+|.++...|++++|+..+++++...+...........
T Consensus 115 ------------------------~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 115 ------------------------LAKSM-N-DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp ------------------------HHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ------------------------HHHHc-c-CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 00000 0 000113455666777777777777777777766654333333344556
Q ss_pred HHHHHHHHHhhcC-----------------hHHHHHHHHHHhhcCCC---cHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 235 WLLKLMFNISELR-----------------FENAVSSAEKAGLLDYS---NVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 235 ~~~~a~~~~~~g~-----------------~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
+..+|.++...|+ +++|+..+++++.+.+. .... ...+..+|.++...|++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ---------GRACGNLGNTYYLLGDF 239 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH---------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH---------HHHHHHHHHHHHHcCCh
Confidence 7777999999999 99999999998865432 2222 12245689999999999
Q ss_pred HHHHHHHHHHhccCCCChh------HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCH
Q 009096 295 SEACSAYGEGLKYDSYNSI------LYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRW 362 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 362 (543)
++|+.+|++++++.+.... ++.++|.++...|++++|+..|++++.+.|.. ..++..+|.++...|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999998775544 89999999999999999999999999987754 67899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHh
Q 009096 363 SEAVRDYEALRRELPGDN------EVAESLHNAQVALKK 395 (543)
Q Consensus 363 ~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~l~~ 395 (543)
++|+.+|++++++.+... .+...++.+...+++
T Consensus 320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 999999999999866432 245555555554443
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=7.2e-21 Score=189.08 Aligned_cols=327 Identities=12% Similarity=0.031 Sum_probs=237.4
Q ss_pred ccccccccccccccc----CCCCCCCCccccccccCHHHHHHHhhHHHhcC-----CHHHHHHHHHHHHhcCCcchhhHH
Q 009096 16 TGNYGHGSIVRSCSS----NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKG-----NFVEALKLYDKAISMSPENAAYRS 86 (543)
Q Consensus 16 ~~~~g~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~ 86 (543)
...+..|.+....+. ..|...++++... ++++++.+|..+...| ++++|+.+|+++++. .++.+++
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~ 110 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLI 110 (452)
T ss_dssp TGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence 344444444443333 4688888888855 7889999999777766 889999999999985 4566999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhCCHHHHHH----HhcCCCCCCChHHHhHHHHHHHHH
Q 009096 87 NRAATLTALGRLTEAVSDCEEAVRLD-PGYNRAHQRLASLYFRLGQVENARH----HLCFPGHHPDPNELLKLQSFEKHL 161 (543)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~----~~~~a~~~~~~~~~~~~~~~~~~~ 161 (543)
.+|.+|...+...++.+.++...... +.++.+++.+|.+|...+.++++.. +++.+.. .++. .++
T Consensus 111 ~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~---------a~~ 180 (452)
T 3e4b_A 111 PLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDI---------CYV 180 (452)
T ss_dssp HHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTT---------HHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHH---------HHH
Confidence 99999999877655544444433322 4568899999999999996555444 4444433 2222 367
Q ss_pred HHHHhhhhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----cChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 162 NRCAESRKIG---DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL----HQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 162 ~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
.++.++...| ++++|+..|+++.+.+|.. ...++.+|.+|... +++++|+.+|+++. |.++.....+
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L-- 254 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL-- 254 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH--
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH--
Confidence 7888888899 9999999999999998876 56668889999766 79999999999998 7777765555
Q ss_pred HHHHHHH-H--HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhc
Q 009096 235 WLLKLMF-N--ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR-----RYSEACSAYGEGLK 306 (543)
Q Consensus 235 ~~~~a~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~ 306 (543)
|.+ + ...+++++|+.+|+++.+.. ++.+. ..+|.+|. .| ++++|+.+|+++.
T Consensus 255 ----g~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~------------~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 255 ----AQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAE------------LLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp ----HHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHH------------HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHH------------HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 777 4 56899999999999998654 55553 34788888 55 9999999999999
Q ss_pred cCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCC
Q 009096 307 YDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 307 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 378 (543)
+.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++++|..+|+++.+..+
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~- 389 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT- 389 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-
Confidence 8999999999999987 4599999999999987 4678999999999985 4699999999999998764
Q ss_pred ChHHHHHHHHH
Q 009096 379 DNEVAESLHNA 389 (543)
Q Consensus 379 ~~~~~~~l~~~ 389 (543)
+.+...+..+
T Consensus 390 -~~a~~~l~~l 399 (452)
T 3e4b_A 390 -PEANDLATQL 399 (452)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 4444444443
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=9.3e-22 Score=187.83 Aligned_cols=270 Identities=14% Similarity=0.015 Sum_probs=209.2
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSF 157 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 157 (543)
...++..|.++...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------- 71 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT------------- 71 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 4567889999999999999999999999999998 46788999999999999999998866542
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..... . ++.....++..+|.++...|++++|+..++++++..+...........+..
T Consensus 72 ---------------------~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 128 (338)
T 3ro2_A 72 ---------------------LARTI-G-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128 (338)
T ss_dssp ---------------------HHHHH-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------Hhhcc-c-ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 00000 0 001114456667778888888888888888777766655554455567777
Q ss_pred HHHHHHhhcC--------------------hHHHHHHHHHHhhcCCC---cHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 238 KLMFNISELR--------------------FENAVSSAEKAGLLDYS---NVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 238 ~a~~~~~~g~--------------------~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
+|.++...|+ +++|+..+++++...+. .... ...+..+|.++...|++
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ---------GRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH---------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHH---------HHHHHHHHHHHHHhCCH
Confidence 8999999999 99999999998865322 2221 12245689999999999
Q ss_pred HHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCH
Q 009096 295 SEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRW 362 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 362 (543)
++|+..++++++..+.. ..++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 99999999999876543 3489999999999999999999999999887655 67899999999999999
Q ss_pred HHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHhh
Q 009096 363 SEAVRDYEALRRELPGD------NEVAESLHNAQVALKKS 396 (543)
Q Consensus 363 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~ 396 (543)
++|+.++++++++.|.. ..+...++.+...+++.
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 99999999999987653 22444555555555433
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=189.78 Aligned_cols=265 Identities=11% Similarity=0.026 Sum_probs=169.2
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM--------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
.....+|..+..+..+|..+...|++++|+.+|++++++ .|....++..+|.++...|++++|+..+++++.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999999995 677789999999999999999999999999998
Q ss_pred c--------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 111 L--------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 111 ~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
. .|....++..+|.++...|++++|+.+|++++. .+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------------------------------~~~~ 143 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE----------------------------------IREK 143 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------------------------------HHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----------------------------------HHHH
Confidence 7 355678899999999999999999998866543 1111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCC--ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYS--PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
....++.....++..+|.++...|++++|+..+++++...... .........+..+|.++...|++++|+..+++++.
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111123445566667777777777777766665541100 00112234556668888889999999999988886
Q ss_pred cCCCc---------HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHH
Q 009096 261 LDYSN---------VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 261 ~~p~~---------~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 331 (543)
..|.. ...+.. ...+...+..+...+.+.+|+..+.+++...|..+.++..+|.+|...|++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMH------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp HHHHHHHC------CCHHHH------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCCCCcchHHHHHH------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHH
Confidence 54321 111110 111222344444455555555566666555555566666666666666666666
Q ss_pred HHHHHHHHhhCC
Q 009096 332 IEDCNVALRIQP 343 (543)
Q Consensus 332 ~~~~~~al~~~p 343 (543)
+.+|++++++.|
T Consensus 298 ~~~~~~al~l~~ 309 (311)
T 3nf1_A 298 ETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 666666665544
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=3.7e-22 Score=207.05 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+.++.++|.++..+|++++|+..|+++++++|++.. ++.++|.++..+|++++|+..|+++++++|++..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~-- 80 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY-- 80 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--
Confidence 678888999999999999999999999999999855 445559999999999999999999999999999885
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 351 (543)
.++|.++..+|++++|++.|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++.+
T Consensus 81 ----------~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 81 ----------SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp ----------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 352 RAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+|.++..+|++++|.+.+++++++.|+
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999987654
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=1.1e-21 Score=203.46 Aligned_cols=175 Identities=22% Similarity=0.219 Sum_probs=142.1
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
...|.++++++++|.++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA 201 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~ 201 (543)
+|.++..+|++++|+..|+ ++++++|++ ..++.++|.+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~-----------------------------------------kAl~l~P~~-~~a~~~Lg~~ 120 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYT-----------------------------------------RAIQINPAF-ADAHSNLASI 120 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----------------------------------------HHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH-----------------------------------------HHHHhCCCC-HHHHHHHHHH
Confidence 9999999998888887764 455556655 5666667777
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
+..+|++++|+..|+++++++|++... +.++|.++..+|++++|++.+++++++.|+
T Consensus 121 ~~~~g~~~eAi~~~~~Al~l~P~~~~a------~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALKLKPDFPDA------YCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHH------HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHH------HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 777777777777777777777766443 333367777777777777777777665443
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.3e-20 Score=173.40 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY--- 115 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 115 (543)
...|.+++.++.+|..++..|+|++|+..|+++++.+|++ +.+++.+|.+|+.+|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567788999999999999999999999999999998888 8889999999999999999999999999988754
Q ss_pred hhHHHHHHHHHHHh
Q 009096 116 NRAHQRLASLYFRL 129 (543)
Q Consensus 116 ~~~~~~la~~~~~~ 129 (543)
+.+++.+|.++...
T Consensus 89 ~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 89 PQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666666654
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=1.2e-19 Score=167.66 Aligned_cols=252 Identities=13% Similarity=0.016 Sum_probs=202.1
Q ss_pred HHHHHhhHHHhcCCH-HHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNF-VEALKLYDKAISMSPENAAYRSNRAATLTALG--RLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
..+......++.|.+ ++|+.++.++|.++|++..+|+.++.++..+| ++++++..+.+++..+|++..+|..++.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 344444555566666 69999999999999999999999999999999 999999999999999999999999999887
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
...... . ...+++++++..++++++.+|.+ ..
T Consensus 114 ~~~~~~------l----------------------------~~~~~~~~EL~~~~~~l~~~pkn-y~------------- 145 (306)
T 3dra_A 114 GQIMEL------N----------------------------NNDFDPYREFDILEAMLSSDPKN-HH------------- 145 (306)
T ss_dssp HHHHHH------T----------------------------TTCCCTHHHHHHHHHHHHHCTTC-HH-------------
T ss_pred HHHHHh------c----------------------------cccCCHHHHHHHHHHHHHhCCCC-HH-------------
Confidence 331000 0 00134455556666666666655 33
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH--HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE--NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 284 (543)
+|..++.+....|.++ ++++.++++++.+|.+..+|.. +
T Consensus 146 ---------------------------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~------------R 186 (306)
T 3dra_A 146 ---------------------------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH------------R 186 (306)
T ss_dssp ---------------------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH------------H
T ss_pred ---------------------------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH------------H
Confidence 4444455555566665 7888888888888888888643 5
Q ss_pred HHHHHhcCC------HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH-HHHHHHHHHhhC---CCCHHHHHHHHH
Q 009096 285 GNNLFSSRR------YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN-SIEDCNVALRIQ---PNYTKALLRRAV 354 (543)
Q Consensus 285 g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~ 354 (543)
+.++...++ ++++++++.+++..+|++..+|+.++.++...|+... ...++.+++.++ |.++.++..++.
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 777777776 9999999999999999999999999999999998555 556888888776 889999999999
Q ss_pred HHHHccCHHHHHHHHHHHHh-cCCCChHHHHHHHH
Q 009096 355 SNEKLGRWSEAVRDYEALRR-ELPGDNEVAESLHN 388 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~ 388 (543)
++.+.|+.++|+++|+++.+ .+|-....|.....
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 99999999999999999997 89999999876543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.9e-22 Score=188.45 Aligned_cols=255 Identities=13% Similarity=0.033 Sum_probs=181.2
Q ss_pred CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChH
Q 009096 78 SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPN 149 (543)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 149 (543)
+|....++..+|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+..|++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 97 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA----- 97 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 5677899999999999999999999999999995 566788899999999999999999998866542
Q ss_pred HHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC-----CC
Q 009096 150 ELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE-----HY 224 (543)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~ 224 (543)
.+.+....++.....++..+|.++...|++++|+..++++++.. ++
T Consensus 98 -----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 98 -----------------------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp -----------------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -----------------------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111111111224556667777777777777777777776653 22
Q ss_pred CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC-----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 009096 225 SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD-----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS 299 (543)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~ 299 (543)
. ......+..+|.++...|++++|+..+++++... ++++..... +..+|.++...|++++|+.
T Consensus 149 ~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 149 H---PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT---------KNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp C---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH---------HHHHHHHHHHHTCHHHHHH
T ss_pred C---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHHHHcCCHHHHHH
Confidence 2 2223456677999999999999999999999871 223332222 2458999999999999999
Q ss_pred HHHHHhccC---------CCChhHHhH------HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 009096 300 AYGEGLKYD---------SYNSILYCN------RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSE 364 (543)
Q Consensus 300 ~~~~al~~~---------p~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 364 (543)
.|+++++.. +.....+.. .+..+...+.+.+|+..+++++...|....++..+|.++...|++++
T Consensus 217 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 296 (311)
T 3nf1_A 217 LYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296 (311)
T ss_dssp HHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHH
Confidence 999999753 333333333 44445566677788889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 009096 365 AVRDYEALRRELPG 378 (543)
Q Consensus 365 A~~~~~~al~~~p~ 378 (543)
|+.+|++++++.|+
T Consensus 297 A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 297 AETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999875
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=1.4e-19 Score=175.80 Aligned_cols=287 Identities=15% Similarity=0.008 Sum_probs=215.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN----- 116 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 116 (543)
..+.+..+|..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++.+.|...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 456778889999999999999999999999877543 3678899999999999999999999998765432
Q ss_pred -hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--CCCHH
Q 009096 117 -RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV--DSSPQ 193 (543)
Q Consensus 117 -~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~ 193 (543)
.++..+|.++...|++++|+..+++++. ...+. ..+ .....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~~ 136 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------------------LINEQ--HLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHT--TCTTSTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------HHHHh--ccccCcHHHH
Confidence 2356777777777777777777655432 00000 001 11134
Q ss_pred HHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHH
Q 009096 194 LVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASV 271 (543)
Q Consensus 194 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 271 (543)
.+..+|.++...|++++|...+++++...+...... ....+..+|.++...|++++|...+++++.+.+. ....+..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 566678888888888888888888887776654333 2346667799999999999999999999876332 2211111
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC---
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPN--- 344 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 344 (543)
.. ....+.++...|++++|...+++++...|.. ...+..+|.++...|++++|+..+++++...+.
T Consensus 216 ~~-------~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 288 (373)
T 1hz4_A 216 NA-------NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 288 (373)
T ss_dssp HH-------HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HH-------HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 10 1124566889999999999999999887653 235678999999999999999999999887543
Q ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 345 ---YTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 345 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
...++..+|.++...|++++|...+++++.+.+
T Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 289 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 225788999999999999999999999998765
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=2.8e-20 Score=171.09 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+..++.+|..+...|++++|+..|+++++..|.++.. ..+++.+|.++...|++++|+..|++++...|+++....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA---ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 37888999999999999999999999999999988432 234566699999999999999999999999997755433
Q ss_pred HHHhHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhccCCCChhHH-----------------hHHHHHHHHc
Q 009096 271 VLTNVKMVVRARTRGNNLFS--------SRRYSEACSAYGEGLKYDSYNSILY-----------------CNRAICWSKM 325 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~ 325 (543)
. ++.+|.++.. .|++++|+..|+++++.+|++..+. +.+|.+|...
T Consensus 91 a---------~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 91 A---------EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR 161 (261)
T ss_dssp H---------HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H---------HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 2458999999 9999999999999999999987766 8899999999
Q ss_pred cCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 326 GLWENSIEDCNVALRIQPN---YTKALLRRAVSNEKL----------GRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+..|+++++.+|+++.+......+...
T Consensus 162 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRA 241 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999998 467999999999987 999999999999999999998766555444433
Q ss_pred H
Q 009096 393 L 393 (543)
Q Consensus 393 l 393 (543)
.
T Consensus 242 ~ 242 (261)
T 3qky_A 242 R 242 (261)
T ss_dssp H
T ss_pred H
Confidence 3
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=4.5e-21 Score=200.22 Aligned_cols=76 Identities=13% Similarity=-0.066 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+|.++...|++++ +..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.++...+
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 4555555555555 555555555555555555555555555555555555555555555555555555555554433
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=6e-21 Score=186.20 Aligned_cols=247 Identities=12% Similarity=-0.013 Sum_probs=182.3
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhc---CC---cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hh
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISM---SP---ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-------NR 117 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 117 (543)
++.+|..++..|++++|+..|++++++ .+ ..+.+++.+|.+|...|++++|+.++++++++.+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 334999999999999999999999987 22 346889999999999999999999999999885443 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
++..+|.++..+|++++|+.+|++++. ...+. .++.....++..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~~~~ 229 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYS----------------------------------MAEAE--KQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------------------HHHHc--CChHHHHHHHHH
Confidence 778888888888888888887766543 00000 000011245666
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNV 275 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~ 275 (543)
+|.+|..+|++++|+..++++++..+..........++..+|.++...|++++|+.++++++.+.+. ++.....
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---- 305 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE---- 305 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH----
Confidence 7777777777777777777777643222211112445666799999999999999999999877543 2222111
Q ss_pred HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 276 KMVVRARTRGNNLFSSRR---YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
+..+|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|+.+|++++++..
T Consensus 306 -----~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 306 -----FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -----HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2347999999999 88999999887 44455677899999999999999999999999998754
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=4.4e-21 Score=179.37 Aligned_cols=191 Identities=11% Similarity=0.016 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
..++..+|.+|..+|++++|+.+|++++.+.+...........+..+|.++... |++++|+.+|++++.+.|.......
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 345666777777777777777777777777665544444455677779999996 9999999999999998775421100
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh-------HHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI-------LYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
....+.++|.++...|++++|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|+++++++|
T Consensus 157 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 157 ------SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred ------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0112356899999999999999999999999987654 578999999999999999999999999999
Q ss_pred CCHHH-----HHHHHHHHH--HccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 344 NYTKA-----LLRRAVSNE--KLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 344 ~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
++... +..++..+. ..+++++|+..|++++.++|.+..++..+.+
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 87653 445666664 4678999999999999998877655544433
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=5.4e-20 Score=179.03 Aligned_cols=310 Identities=11% Similarity=-0.054 Sum_probs=230.9
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC---cchhhHHhHHHHHH----HcCCHHHHH---------HHHHHHHhc
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSP---ENAAYRSNRAATLT----ALGRLTEAV---------SDCEEAVRL 111 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~ 111 (543)
....++-=..++..+++++|...++++.+.-+ .+.......+...+ ..+.+..+. ..+++.-..
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 34444444455789999999999998765321 23333322222221 123332222 444443221
Q ss_pred C-CC----ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCC----CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 112 D-PG----YNRAHQRLASLYFRLGQVENARHHLCFPGHH----PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 112 ~-p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
. |. ....++.+|..+...|++++|+..|++++.. +++ ......+..+|.++...|+++.|+..+.+
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-----IEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 11 1235778899999999999999999998871 222 34466788999999999999999999999
Q ss_pred HHHcCCCC------CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 009096 183 AIAIGVDS------SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAE 256 (543)
Q Consensus 183 ~l~~~p~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 256 (543)
+++..+.. ...++..+|.++...|++++|+..++++++..+..........++.++|.++...|++++|+.+|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99875432 245677899999999999999999999998766555555556678888999999999999999999
Q ss_pred HHhh-----cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHcc
Q 009096 257 KAGL-----LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMG 326 (543)
Q Consensus 257 ~al~-----~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g 326 (543)
+++. .+|....+ +..+|.++...|++++|+.++++++++.+ .....+..++.++...+
T Consensus 247 ~al~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKV------------LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp HHHHHHHHHCGGGHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHhhCChhHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9998 55555333 34589999999999999999999998743 33455677888888888
Q ss_pred C---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 327 L---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 327 ~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+ +.+|+..+++. ...|....++..+|.+|...|++++|..+|++++++
T Consensus 315 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 315 DERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8 88888888872 233445678889999999999999999999999875
No 78
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=99.85 E-value=3.5e-21 Score=149.65 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=81.5
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
..+.+.+.+.+.+..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 3 ~~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 82 (105)
T 4euy_A 3 NTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK 82 (105)
T ss_dssp -------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEETTE
T ss_pred cccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcC
Q 009096 491 KLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++.++.|. +.+++.++|++++
T Consensus 83 ~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 83 EILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEEEESSCCHHHHHHHHHTTC
T ss_pred EEEEEeCCcCHHHHHHHHHHhh
Confidence 99999999 9999999999875
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=5.2e-21 Score=159.37 Aligned_cols=141 Identities=10% Similarity=-0.006 Sum_probs=127.2
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
+|.++...|++++|+..+++++..+|+++..+ +.+|.+|...|+|++|++.|+++++++|+++.+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~------------~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKG------------FYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 38889999999999999999999988877664 347999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhcCCCChHHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD-YEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~ 390 (543)
+|.+|..+|++++|+..|+++++++|+++.+++++|.++...|++++|... ++++++++|+++.++.....+.
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887765 5999999999999987665543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=2e-19 Score=155.66 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
....+..+|.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++...|++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~- 79 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD------VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA- 79 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-
Confidence 3566788999999999999999999999999998744 445559999999999999999999999999988775
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|+++.++.
T Consensus 80 -----------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (186)
T 3as5_A 80 -----------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR 148 (186)
T ss_dssp -----------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHH
Confidence 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.+|.++...|++++|..+++++++++|+++..
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 99999999999999999999999999887643
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=2.4e-19 Score=160.59 Aligned_cols=186 Identities=16% Similarity=0.128 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+.++..+|.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++..+|++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-- 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN-- 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH--
Confidence 667788899999999999999999999888888744 344459999999999999999999999999988765
Q ss_pred HHhHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhc--cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 009096 272 LTNVKMVVRARTRGNNLFSS-RRYSEACSAYGEGLK--YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 348 (543)
..+|.++... |++++|+..|+++++ ..|.+..++..+|.++...|++++|+..|+++++..|+++.+
T Consensus 80 ----------~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 149 (225)
T 2vq2_A 80 ----------NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149 (225)
T ss_dssp ----------HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred ----------HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH
Confidence 3479999999 999999999999999 667778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHh
Q 009096 349 LLRRAVSNEKLGRWSEAVRDYEALRRELP-GDNEVAESLHNAQVALKK 395 (543)
Q Consensus 349 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~l~~ 395 (543)
+..+|.++...|++++|+..++++++..| +++.++..+..+....+.
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 999887666655544433
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=5.9e-20 Score=171.71 Aligned_cols=239 Identities=12% Similarity=-0.019 Sum_probs=169.1
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHhCCHHHHH
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG------YNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 136 (543)
++++|+..|+++ |.+|...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 478888888777 56777888888888888888877432 2456777777777777777777
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-cChhHHHHHh
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL-HQNEDADSCL 215 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~-~~~~~A~~~~ 215 (543)
.+|++++. .+...|++..+ ..++..+|.+|... |++++|+.+|
T Consensus 98 ~~~~~Al~---------------------l~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 98 DSLENAIQ---------------------IFTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHH---------------------HHHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHH---------------------HHHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 77765542 00111222111 34566778888885 8888888888
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHH
Q 009096 216 SNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYS 295 (543)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 295 (543)
++++++.|...........+..+|.++..+|++++|+..|++++.+.|++..... .....+..+|.++...|+++
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW-----SLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG-----GHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH-----HHHHHHHHHHHHHHHcCCHH
Confidence 8888877765443333445677799999999999999999999999988754210 00111345899999999999
Q ss_pred HHHHHHHHHhccCCCChh-----HHhHHHHHHH--HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 296 EACSAYGEGLKYDSYNSI-----LYCNRAICWS--KMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 296 ~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+|+..|+++++++|+... .+..++..+. ..+++++|+..|++++.++|.+...+..+-..+
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999998654 3455666664 467899999999999999998777766655544
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=3.6e-19 Score=157.35 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=146.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHh----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSN----------------RAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (543)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
++|+++.++..+|.++..+|++++|+..| +++++++|++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-----------------------------------------~~al~~~P~~ 121 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMY-----------------------------------------EKILQLEADN 121 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHCTTC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------------HHHHHcCCCC
Confidence 99999999999999999988888777765 6677788877
Q ss_pred CHHHHHHHHHHHHHccC--hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH
Q 009096 191 SPQLVACKAEAHLKLHQ--NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (543)
+.++..+|.+|...|+ ...+...+.+++...|. ..+++.+|.++...|++++|+..|+++++++|+..
T Consensus 122 -~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 122 -LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-------QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-------hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 7888999999987765 45677788887643322 12455668899999999999999999999999854
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=6.2e-19 Score=158.01 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=75.5
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch---hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---HHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA---AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR---AHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (543)
+++.++.+|..++..|+|++|+..|+++++..|+++ .+++.+|.+++..|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 578899999999999999999999999999988764 78999999999999999999999999999998865 788
Q ss_pred HHHHHHHHhC
Q 009096 121 RLASLYFRLG 130 (543)
Q Consensus 121 ~la~~~~~~g 130 (543)
.+|.++..++
T Consensus 83 ~~g~~~~~~~ 92 (225)
T 2yhc_A 83 MRGLTNMALD 92 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888887655
No 85
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=9.2e-20 Score=146.58 Aligned_cols=120 Identities=28% Similarity=0.563 Sum_probs=110.8
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+..++|+.... +.++|..+++.|+|++|++.|+++++++|+++.+|.++|.++..+|++++|+..|++
T Consensus 5 ~a~inP~~a~~------------~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 5 LAYINPELAQE------------EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp --CCCHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 33466665554 356899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+++++|+++.+|+++|.++..+|++++|+..|+++++++|++++++..+..+
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888765
No 86
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.83 E-value=4.7e-20 Score=144.08 Aligned_cols=100 Identities=22% Similarity=0.497 Sum_probs=94.1
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
....+.+.|++++..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 9 ~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 88 (109)
T 3f3q_A 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGK 88 (109)
T ss_dssp EECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred cCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEEEEECCE
Confidence 34567788889998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhc
Q 009096 491 KLKEMINPSHQFLEDSANLA 510 (543)
Q Consensus 491 ~~~~~~g~~~~~~~~~~~~~ 510 (543)
++.++.|.++++|+++|+++
T Consensus 89 ~~~~~~G~~~~~l~~~i~~~ 108 (109)
T 3f3q_A 89 EVAKVVGANPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHhh
Confidence 99999999889999999875
No 87
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=6.6e-18 Score=178.34 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=183.8
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc----chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE----NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
..+|+..-.....++..|.+.+|++.|++++ +.|. +...-..++.+..+. +..+..++..+.-..+ .-
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 3466777788889999999999999999999 4454 222222233333222 2222222222211111 12
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.+|.++..+|.+++|...|+++.. .. ......+...+++++|++.++++ +.+.+|..+|.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~---~~-----------~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV---NT-----------SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAK 1113 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC---HH-----------HHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHH
Confidence 256666666666666666666531 00 00011112445555555555433 12455555555
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH------HHHHHHHh
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV------EIASVLTN 274 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~ 274 (543)
++...|++++|+..|.++ +++.. +...|.++.+.|++++|+++|..+.+..++.. .++.-+..
T Consensus 1114 Aql~~G~~kEAIdsYiKA-----dD~sa------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA-----DDPSS------YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc-----CChHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 555555555555555554 22222 22225555555555555555555554443310 00000000
Q ss_pred HH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC--
Q 009096 275 VK---------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP-- 343 (543)
Q Consensus 275 ~~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 343 (543)
+. ....+...|..+...|+|++|+.+|.++ ..|..+|.++.++|++++|++.++++....+
T Consensus 1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWk 1254 (1630)
T 1xi4_A 1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 1254 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH
Confidence 00 0112456899999999999999999986 4789999999999999999999998855433
Q ss_pred -----------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 344 -----------------------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 344 -----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
.+++-+..++..|...|.+++|+.++++++.++|.+...+..++.+....+.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 2455566788889999999999999999999999999999888877665543
No 88
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=145.33 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=84.6
Q ss_pred CCeEEeehhhhhhh-ccCCCC--ceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKA-AISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~-~i~~~~--~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+.+++. +.|.+ +...++ +++++||++||++|+.+.|.|++++++|++++|++||+++. +.+|+|.++||++
T Consensus 3 G~v~~it~-~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~~ 78 (118)
T 3evi_A 3 GELREISG-NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIF 78 (118)
T ss_dssp CSCEECCG-GGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred cceEEeCH-HHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEEE
Confidence 34556654 44544 444444 89999999999999999999999999999999999999986 5899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhc
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 510 (543)
+|+||+++.+++|. +.++|+.+|.+.
T Consensus 79 ~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 79 VYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp EEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred EEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 99999999999985 589999999864
No 89
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=5.1e-18 Score=157.06 Aligned_cols=209 Identities=12% Similarity=0.038 Sum_probs=168.2
Q ss_pred CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhH
Q 009096 78 SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR----LGQVENARHHLCFPGHHPDPNELLK 153 (543)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~ 153 (543)
+|.++.+++.+|.++...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+.+|++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~------------ 67 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK------------ 67 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH------------
Confidence 578899999999999999999999999999998 7788899999999888 7777777766633
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH
Q 009096 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL 233 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 233 (543)
+++.+ .+.++..+
T Consensus 68 -----------------------------a~~~~---~~~a~~~l----------------------------------- 80 (273)
T 1ouv_A 68 -----------------------------ACDLN---YSNGCHLL----------------------------------- 80 (273)
T ss_dssp -----------------------------HHHTT---CHHHHHHH-----------------------------------
T ss_pred -----------------------------HHHCC---CHHHHHHH-----------------------------------
Confidence 33321 13333333
Q ss_pred HHHHHHHHHHh----hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 009096 234 VWLLKLMFNIS----ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGL 305 (543)
Q Consensus 234 ~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al 305 (543)
|.++.. .+++++|+..|+++++.+ ++.++ ..+|.++.. .+++++|+.+|++++
T Consensus 81 -----g~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~------------~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 81 -----GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGC------------ASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp -----HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH------------HHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred -----HHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHH------------HHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 555555 777778888888887763 44443 447999999 999999999999999
Q ss_pred ccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC
Q 009096 306 KYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 306 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 377 (543)
+.. ++.++.++|.+|.. .+++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++++..|
T Consensus 142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 976 68899999999999 99999999999999987 468999999999999 9999999999999999976
Q ss_pred CChHHHHHHHHHHHH
Q 009096 378 GDNEVAESLHNAQVA 392 (543)
Q Consensus 378 ~~~~~~~~l~~~~~~ 392 (543)
+.+...++.+...
T Consensus 218 --~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 218 --GGGCFNLGAMQYN 230 (273)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHc
Confidence 6666666665443
No 90
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=99.82 E-value=7.7e-20 Score=142.65 Aligned_cols=102 Identities=21% Similarity=0.419 Sum_probs=93.7
Q ss_pred eEEeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.|.+.+ ..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|+
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence 45677778888888 5789999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+++.++.|.+.++|.++|++++
T Consensus 83 ~G~~~~~~~G~~~~~l~~~l~~~l 106 (107)
T 1gh2_A 83 NKVRIDQYQGADAVGLEEKIKQHL 106 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhc
Confidence 999999999996677999998754
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.82 E-value=9.7e-20 Score=161.00 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=149.2
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
+..++..|..+...|++++|+..|+++++.+|++ +.+++..+ ... ... .......
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~-----~~~-----------------~~~--~~~~~~~ 58 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-TEMYYWTN-----VDK-----------------NSE--ISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HHHHHHHH-----SCT-----------------TSH--HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHhh-----hcc-----------------hhh--hhHHHHH
Confidence 4556778888888888888888888888888765 33333221 100 001 1112233
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHh
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYC 316 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 316 (543)
.+|.++...|++++|+..|+++++++|++..++ ..+|.++...|++++|+..|+++++++|+++.+++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCL------------EACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 469999999999999999999999999999885 34799999999999999999999999999999999
Q ss_pred HHHHHHHHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 317 NRAICWSKMGL--WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 317 ~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
++|.+|...|+ ...+...+++++...|. ..+++.+|.++..+|++++|+.+|+++++++|++ .+...+.++
T Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 99999987764 55677888887654332 3578899999999999999999999999999974 344444443
No 92
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1e-17 Score=176.86 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=163.2
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
++..|+.+|..+...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++ +.+...+|.+|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHH
Confidence 4445555555555555555555555443 44445555555555555555555555555544422 11122355555
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
.+++++++ ++.|.+ .++ ...+...|..+...|+|++|+..|.++ ..|..++.++.++|
T Consensus 1178 AKl~rlee-le~fI~---~~n---------~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEFIN---GPN---------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 1235 (1630)
T ss_pred HhhcCHHH-HHHHHh---CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhC
Confidence 55555443 222211 111 112344555556666666666666553 23445566666666
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
++++|++.++++.. . .+|...+.++...|+|..|..+... +..+|+.. ..++.
T Consensus 1236 e~q~AIEaarKA~n-----~------~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deL---------------eeli~ 1288 (1630)
T 1xi4_A 1236 EYQAAVDGARKANS-----T------RTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL---------------EELIN 1288 (1630)
T ss_pred CHHHHHHHHHHhCC-----H------HHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHH---------------HHHHH
Confidence 66666666665521 1 2233335555556666666555542 33343332 34678
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH--ccCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHc
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK--MGLWENSIEDCNVALRIQP-----NYTKALLRRAVSNEKL 359 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 359 (543)
.|...|.|++|+.+++.++.+++.+...+..+|.+|.+ -++..++++.|...+.+.| ++...|..+..+|.+-
T Consensus 1289 yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999888888765 5678889999998888877 7788899999999999
Q ss_pred cCHHHHHHHHHHH
Q 009096 360 GRWSEAVRDYEAL 372 (543)
Q Consensus 360 g~~~~A~~~~~~a 372 (543)
|+++.|+...-..
T Consensus 1369 ~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1369 EEYDNAIITMMNH 1381 (1630)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999544443
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=2.3e-19 Score=174.56 Aligned_cols=246 Identities=12% Similarity=-0.008 Sum_probs=179.3
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCC------cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC-------Ch
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSP------ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG-------YN 116 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 116 (543)
.++.+|..++..|++++|+..|++++++.+ ..+.+++.+|.+|...|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999987632 34678999999999999999999999999987543 24
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
.++..+|.++..+|++++|+.+|++++. ...+. .++.....++.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~~~ 226 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALE----------------------------------LAMDI--QNDRFIAISLL 226 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH----------------------------------HHHHc--CCHHHHHHHHH
Confidence 4677888888888888888887766543 00000 00001134566
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHh
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTN 274 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 274 (543)
.+|.+|...|++++|+..+++++........+.. ..++..+|.++...|++++|+.++++++.+.+. ++.....
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--- 302 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--- 302 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH---
Confidence 6777777777777777777777763221111122 345666799999999999999999999987554 2211111
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 275 VKMVVRARTRGNNLFSSRR---YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+..++.++...++ +.+|+..+++ ....|....++..+|.+|...|++++|+.+|+++++..
T Consensus 303 ------~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 303 ------FLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ------HHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1236788888888 8899998887 33345556788899999999999999999999998764
No 94
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.81 E-value=5.2e-20 Score=145.56 Aligned_cols=101 Identities=28% Similarity=0.484 Sum_probs=93.5
Q ss_pred EEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 411 EEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 411 ~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
....+.+.|.+.+. .+++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++
T Consensus 14 ~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 93 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 93 (116)
T ss_dssp BCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEESS
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEEeC
Confidence 34456788888887 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHhcC
Q 009096 489 GEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 489 g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+++.++.|.+.++|+++|++++
T Consensus 94 G~~~~~~~G~~~~~l~~~l~~~l 116 (116)
T 3qfa_C 94 GQKVGEFSGANKEKLEATINELV 116 (116)
T ss_dssp SSEEEEEESCCHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCHHHHHHHHHHhC
Confidence 99999999999999999998753
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.2e-20 Score=177.60 Aligned_cols=285 Identities=11% Similarity=0.037 Sum_probs=149.3
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
.++|...+++. ++++.|..+|..+...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+.
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34455555544 34579999999999999999999999774 466799999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
+..++ +.+...++.+|.++|++.++.++++. |+. ..+...|..+...|.|++|..+|.++
T Consensus 89 k~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~---------~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 89 KKARE-SYVETELIFALAKTNRLAELEEFING----PNN---------AHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------CHHHHTTTTTC----C-------------------------CTTTHHHHHHHT------
T ss_pred HhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC----CcH---------HHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 86444 77788999999999999998887753 221 26888999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
..+..+|.++.++|++++|++.++++ .++. .|.....++...|+++.|..+... +..+|++..
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~------~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~-- 211 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR------TWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE-- 211 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHH------HHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH--
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc-----CCch------hHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH--
Confidence 24778999999999999999999999 2333 344447899999999999887775 345665532
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH--ccCHHHHHHHHHHHHhhCC----
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK--MGLWENSIEDCNVALRIQP---- 343 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p---- 343 (543)
.+...|.+.|++++|+.++++++.+++.+...+..+|.+|.+ .++..++++.|...+.+.|
T Consensus 212 -------------~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 212 -------------ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp -------------HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred -------------HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH
Confidence 257789999999999999999999999999999999999875 5778889999988888888
Q ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 344 -NYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 344 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
.++..|..+..+|...++++.|+...-....
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~ 310 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 310 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence 7889999999999999999999986655433
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=4.3e-20 Score=153.81 Aligned_cols=146 Identities=8% Similarity=-0.069 Sum_probs=129.3
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
+|.++...|++++|+..+++++...|+++..... +|.+|...|++++|+..|+++++++|+++.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~------la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~------- 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFY------FAKLYYEAKEYDLAKKYICTYINVQERDPKAHR------- 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHH------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------
Confidence 5778888899999999999999888877554444 499999999999999999999999999998863
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIED-CNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~ 356 (543)
.+|.++...|++++|+..|+++++++|+++.+++++|.+|...|++++|... ++++++++|+++.++..++.++
T Consensus 70 -----~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 70 -----FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999887765 5999999999999999999999
Q ss_pred HHccC
Q 009096 357 EKLGR 361 (543)
Q Consensus 357 ~~~g~ 361 (543)
...|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 88875
No 97
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=99.80 E-value=2.5e-19 Score=149.33 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=99.1
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+.+..+.+.+.+...+.. ++++++.||++||++|+.+.|.+++++++++++.|+.||+++++.++++|+|.++||+++
T Consensus 12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 91 (153)
T 2wz9_A 12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLF 91 (153)
T ss_dssp CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCCEEEE
Confidence 345667777888888766 889999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcCCCCCC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 516 (543)
|++|+++.++.|.+.+++.++|++++.....
T Consensus 92 ~~~G~~~~~~~G~~~~~l~~~i~~~l~~~~~ 122 (153)
T 2wz9_A 92 FKNSQKIDRLDGAHAPELTKKVQRHASSGSF 122 (153)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHSCTTSS
T ss_pred EECCEEEEEEeCCCHHHHHHHHHHHhccccC
Confidence 9999999999999888999999998866544
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=6.6e-17 Score=149.92 Aligned_cols=240 Identities=13% Similarity=0.119 Sum_probs=182.7
Q ss_pred HHhcCCHH-HHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 58 MYRKGNFV-EALKLYDKAISMSPENAAYRSNRAATLTALGR----------LTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 58 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
..+.|+++ +|+.++.+++..+|++..+|+.++.++..++. +++++..+..++..+|.+..+|...+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34667776 79999999999999999999999999988876 68999999999999999999999999988
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
..+++ .++++++..++++++.+|.+ ..+|..+
T Consensus 119 ~~l~~---------------------------------------~~~~~EL~~~~k~l~~dprN-y~AW~~R-------- 150 (331)
T 3dss_A 119 SRLPE---------------------------------------PNWARELELCARFLEADERN-FHCWDYR-------- 150 (331)
T ss_dssp HHCSS---------------------------------------CCHHHHHHHHHHHHHHCTTC-HHHHHHH--------
T ss_pred hccCc---------------------------------------ccHHHHHHHHHHHHHhCCCC-HHHHHHH--------
Confidence 87653 02344455556677777666 3444444
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR-FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
+.+....|. ++++++++.+++..+|.+..+|.. ++
T Consensus 151 --------------------------------~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~------------R~ 186 (331)
T 3dss_A 151 --------------------------------RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY------------RS 186 (331)
T ss_dssp --------------------------------HHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH------------HH
T ss_pred --------------------------------HHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH------------HH
Confidence 444444454 366777777777777777776643 34
Q ss_pred HHHHhc--------------CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-----------cCHHHHHHHHHHHHh
Q 009096 286 NNLFSS--------------RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-----------GLWENSIEDCNVALR 340 (543)
Q Consensus 286 ~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~ 340 (543)
.++... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 444433 5689999999999999999999998776666665 568999999999999
Q ss_pred hCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 341 IQPNYTKALLRRAVSNE---KLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+.|++.-.+..++.+.. ..|..++...++.+.+++||-...-+..+...
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 99999655544444332 35788999999999999999988877666543
No 99
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=99.80 E-value=3.2e-19 Score=142.62 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=95.5
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
.+..+++.+.|.+.+..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++
T Consensus 20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~~ 99 (125)
T 1r26_A 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARS 99 (125)
T ss_dssp CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEEEeC
Confidence 35667776888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHhcC
Q 009096 489 GEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 489 g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+++.++.|.+.++|.++|++++
T Consensus 100 G~~~~~~~G~~~~~l~~~l~~~l 122 (125)
T 1r26_A 100 GKMLGHVIGANPGMLRQKLRDII 122 (125)
T ss_dssp TEEEEEEESSCHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCHHHHHHHHHHHh
Confidence 99999999998899999998764
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=2.1e-18 Score=159.36 Aligned_cols=241 Identities=8% Similarity=-0.088 Sum_probs=197.6
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcC--CHHHHHHHHHHHHhcCCcchhhHHhHHHHH----HHc---CCHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKG--NFVEALKLYDKAISMSPENAAYRSNRAATL----TAL---GRLT 99 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~ 99 (543)
...+|+.....++..+|.+..+|+.++.++...| ++++++.++.+++..+|++..+|+.++.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3345777888999999999999999999999999 999999999999999999999999999999 777 8999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHH
Q 009096 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRE 179 (543)
Q Consensus 100 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (543)
+++..+.++++.+|.+..+|...+.++..+|.++ ..+++..
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~---------------------------------------~~~EL~~ 168 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN---------------------------------------DAKELSF 168 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT---------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC---------------------------------------hHHHHHH
Confidence 9999999999999999999999999998887654 0134555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009096 180 TDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAG 259 (543)
Q Consensus 180 ~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 259 (543)
++++++.+|.+ ..+|..++.++...+... . ...++++++++++++
T Consensus 169 ~~~~i~~d~~N-~sAW~~R~~ll~~l~~~~---------------~-------------------~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 169 VDKVIDTDLKN-NSAWSHRFFLLFSKKHLA---------------T-------------------DNTIDEELNYVKDKI 213 (306)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHSSGGGC---------------C-------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHhccccc---------------h-------------------hhhHHHHHHHHHHHH
Confidence 67777777776 455555555555443210 0 012678999999999
Q ss_pred hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHhccC---CCChhHHhHHHHHHHHccCHHHHHHHH
Q 009096 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSE-ACSAYGEGLKYD---SYNSILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
..+|++..+|.. ++.++...|+..+ ...++.+++.++ |.++.++..++.++.+.|+.++|+++|
T Consensus 214 ~~~p~n~SaW~y------------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 214 VKCPQNPSTWNY------------LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHCSSCHHHHHH------------HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCccHHHH------------HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998754 5667777777444 556777788776 888999999999999999999999999
Q ss_pred HHHHh-hCCCCHHHHHHHHHH
Q 009096 336 NVALR-IQPNYTKALLRRAVS 355 (543)
Q Consensus 336 ~~al~-~~p~~~~~~~~la~~ 355 (543)
+.+.+ .+|-....|..++..
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHhccChHHHHHHHHHHhh
Confidence 99996 799999988877754
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=2.4e-19 Score=148.26 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=116.0
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAIC 321 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 321 (543)
+...+++-.+-..+++++.++|++..++ +.+|.++...|++++|+..|++++.++|+++.+|+++|.+
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~------------~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~ 79 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDI------------YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAI 79 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3344444555566788899999998875 4579999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 322 WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 322 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
+..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|++++++.|+.+
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999876
No 102
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=99.80 E-value=1.6e-19 Score=142.02 Aligned_cols=103 Identities=27% Similarity=0.450 Sum_probs=95.2
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+.+..+.+.+.+.+++..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 91 (114)
T 2oe3_A 12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGK 91 (114)
T ss_dssp GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEEEe
Confidence 34566778888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhc
Q 009096 488 NGEKLKEMINPSHQFLEDSANLA 510 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~ 510 (543)
+|+++.++.|..+++|+++|+++
T Consensus 92 ~G~~~~~~~G~~~~~l~~~l~~~ 114 (114)
T 2oe3_A 92 DGQLIGKIIGANPTALEKGIKDL 114 (114)
T ss_dssp TTEEEEEEESSCHHHHHHHHHTC
T ss_pred CCeEEEEEeCCCHHHHHHHHHhC
Confidence 99999999998889999998763
No 103
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=99.80 E-value=3.4e-19 Score=138.57 Aligned_cols=102 Identities=29% Similarity=0.538 Sum_probs=94.4
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence 345677788888886 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+.+.++.|.+.+++.++|++++
T Consensus 82 ~g~~~~~~~g~~~~~l~~~l~~~l 105 (105)
T 3m9j_A 82 KGQKVGEFSGANKEKLEATINELV 105 (105)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHC
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhC
Confidence 999999999999999999998753
No 104
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=99.80 E-value=2.6e-19 Score=140.12 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=89.8
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
..+.+.| +.+..++++++.||++||++|+.+.|.+++++.+++++.|+.+|++++++++++|+|.++||+++|++|+++
T Consensus 7 ~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 7 ITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp CGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred cCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 3455666 566677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.++.|. ++++|.++|+++.++.
T Consensus 86 ~~~~G~~~~~~l~~~~~~~~~~~ 108 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASIHHHH 108 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC----
T ss_pred EEEcCCCCHHHHHHHHHHHhhhc
Confidence 999998 9999999999886553
No 105
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.80 E-value=3.6e-19 Score=142.39 Aligned_cols=104 Identities=25% Similarity=0.445 Sum_probs=95.3
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+
T Consensus 16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 95 (124)
T 1xfl_A 16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTF 95 (124)
T ss_dssp SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCccCEE
Confidence 44667777788887775 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++++|+++.++.|.+++++.++|++++
T Consensus 96 ~~~~~G~~~~~~~G~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 96 MFLKEGKILDKVVGAKKDELQSTIAKHL 123 (124)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred EEEECCEEEEEEeCCCHHHHHHHHHHhc
Confidence 9999999999999999999999998765
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=3.5e-19 Score=185.98 Aligned_cols=184 Identities=10% Similarity=-0.079 Sum_probs=165.0
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCC--------CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP--------KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
.+|++ +..++..+ ...|++++|+..+++++ +.+|++...+.. +|.++...|++++|+..|++
T Consensus 389 ~~p~~-~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~------~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTD-VAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLM------EVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp CCTTS-TTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHH------HHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCC-cchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHH------HHHHHHhcCCHHHHHHHHHH
Confidence 34555 44444444 78899999999999999 888998765444 49999999999999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+++.+|++..++ ..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|++
T Consensus 459 al~~~p~~~~a~------------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 459 LAERVGWRWRLV------------WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp HHHHHCCCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred HhccCcchHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 999999999886 3479999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
+++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+...
T Consensus 526 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 526 VWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999888877543
No 107
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.79 E-value=2.8e-19 Score=147.61 Aligned_cols=105 Identities=13% Similarity=0.260 Sum_probs=95.1
Q ss_pred eEEeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+.+.+.+.+.+ ..+++++|+||++||++|+.+.|.++++++++++ +.|++||++++++++++|+|.++||++++
T Consensus 5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 84 (149)
T 3gix_A 5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84 (149)
T ss_dssp CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEE
Confidence 44566777788877 5689999999999999999999999999999988 99999999999999999999999999999
Q ss_pred ECCeEE---------EEEcC-C-CHHHHHHHHHhcCCCC
Q 009096 487 KNGEKL---------KEMIN-P-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~---------~~~~g-~-~~~~~~~~~~~~~~~~ 514 (543)
++|+++ .++.| . +++++.++|++.....
T Consensus 85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~ 123 (149)
T 3gix_A 85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA 123 (149)
T ss_dssp ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence 999999 99999 7 9999999999876443
No 108
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.6e-19 Score=138.25 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=89.5
Q ss_pred eEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhh--CCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVR--YPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~--~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+..+++.+.|.+.+.. ++++++.||++||++|+.+.|.+++++++ ++++.|+.+|++++++++++|+|.++||++
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 81 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI 81 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence 3455666777777765 88999999999999999999999999998 578999999999999999999999999999
Q ss_pred EEECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 485 IYKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|++|+++.++.|...+++.++|++++
T Consensus 82 ~~~~G~~~~~~~G~~~~~l~~~l~~~~ 108 (112)
T 3d6i_A 82 IIHKGTILKELSGADPKEYVSLLEDCK 108 (112)
T ss_dssp EEETTEEEEEECSCCHHHHHHHHHHHH
T ss_pred EEECCEEEEEecCCCHHHHHHHHHHHH
Confidence 999999999999997778999998764
No 109
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.79 E-value=6e-19 Score=138.92 Aligned_cols=104 Identities=28% Similarity=0.478 Sum_probs=95.1
Q ss_pred CeEEeehhhhhhhccCC----CCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 409 EVEEISSLEKFKAAISS----PGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~----~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+..+.+.+.+.+.+.. ++++++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+
T Consensus 3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 82 (112)
T 1ep7_A 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF 82 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence 46667777888888765 7899999999999999999999999999998 699999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
+++++|+++.++.|.+.+++.++|++++.
T Consensus 83 ~~~~~G~~~~~~~G~~~~~l~~~l~~~l~ 111 (112)
T 1ep7_A 83 HVYKDGVKADDLVGASQDKLKALVAKHAA 111 (112)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred EEEECCeEEEEEcCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999998653
No 110
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=99.78 E-value=1.1e-18 Score=137.45 Aligned_cols=106 Identities=20% Similarity=0.368 Sum_probs=93.0
Q ss_pred CCCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 406 MSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 406 ~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
|.+.+..+++.+....+...++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||++
T Consensus 3 m~~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 82 (112)
T 1t00_A 3 MAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN 82 (112)
T ss_dssp SSCCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ccceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence 334455666655555566678899999999999999999999999999996 4999999999999999999999999999
Q ss_pred EEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 485 IYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++++|+++.++.|. +.+++.++|++++
T Consensus 83 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 83 VYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999 8999999998764
No 111
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.78 E-value=9.1e-19 Score=137.60 Aligned_cols=99 Identities=24% Similarity=0.305 Sum_probs=90.8
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.|.+.+ .++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|++|+++.+
T Consensus 8 ~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 86 (112)
T 2voc_A 8 DQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86 (112)
T ss_dssp TTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEEE
T ss_pred HHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEEE
Confidence 35666666 78899999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhcCCCCC
Q 009096 495 MINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
+.|. +.+++.++|++.+.++.
T Consensus 87 ~~G~~~~~~l~~~l~~~~~~~~ 108 (112)
T 2voc_A 87 SVGFKPKEALQELVNKHLLEHH 108 (112)
T ss_dssp EESCCCHHHHHHHHHTTSCSCC
T ss_pred EeCCCCHHHHHHHHHHHHHhhc
Confidence 9999 99999999999876654
No 112
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=99.78 E-value=2.7e-19 Score=134.51 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=90.8
Q ss_pred CCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCc-cc
Q 009096 407 SGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRT-VP 481 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~-~P 481 (543)
.+.+..+.+.++|++++..+++++++|+++|||+|+++.|.|+++..+ +++.|+++|+++.++ ++.++||++ .|
T Consensus 5 ~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sP 83 (112)
T 3iv4_A 5 QGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHESP 83 (112)
T ss_dssp GGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSS
T ss_pred hcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccCCC
Confidence 456888999999999998899999999999999999999999999986 789999999999976 899999994 99
Q ss_pred EEEEEECCeEEEE-EcCC-CHHHHHHHHH
Q 009096 482 TFKIYKNGEKLKE-MINP-SHQFLEDSAN 508 (543)
Q Consensus 482 t~~~~~~g~~~~~-~~g~-~~~~~~~~~~ 508 (543)
|+++|+||+.+.+ ..+. +++.|.+.++
T Consensus 84 q~il~k~G~~v~~~SH~~I~~~~l~~~~e 112 (112)
T 3iv4_A 84 QAFYFVNGEMVWNRDHGDINVSSLAQAEE 112 (112)
T ss_dssp EEEEEETTEEEEEEEGGGCSHHHHHHHTC
T ss_pred eEEEEECCEEEEEeeccccCHHHHHHhhC
Confidence 9999999999998 5566 9998887653
No 113
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=99.78 E-value=1.1e-18 Score=135.45 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=91.6
Q ss_pred EeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 412 EISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 412 ~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
.+.+.+.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||++++++|
T Consensus 3 ~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp ECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 4556677777776 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHHhcC
Q 009096 490 EKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 490 ~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++.+..|.+.+++.++|++++
T Consensus 83 ~~~~~~~G~~~~~l~~~l~~~l 104 (104)
T 2vim_A 83 KEVDRFSGANETKLRETITRHK 104 (104)
T ss_dssp EEEEEEESSCHHHHHHHHHHHC
T ss_pred cEEEEEeCCCHHHHHHHHHhhC
Confidence 9999999999999999998753
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.78 E-value=1.8e-18 Score=143.46 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=122.9
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHH
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 331 (543)
-..|++++.++|++...+ +.+|.++...|++++|+..|++++..+|+++.+|+++|.++..+|++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 74 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQL------------YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74 (148)
T ss_dssp CCSHHHHTTCCHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHcCCHhhHHHH------------HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHH
Confidence 346888999999887774 45799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
+..|++++.++|+++.+++++|.++..+|++++|+.+|+++++++|+++........+...++..+.
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888777777777765543
No 115
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.78 E-value=1.3e-18 Score=136.72 Aligned_cols=101 Identities=27% Similarity=0.495 Sum_probs=94.0
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
....+.+.|.+.+..++++++.||++||++|+.+.|.++++.++++++.|+.+|+++++.++++|+|.++||++++++|+
T Consensus 11 ~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 90 (112)
T 1syr_A 11 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 90 (112)
T ss_dssp EEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred EEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEEEEEECCc
Confidence 34566788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhcC
Q 009096 491 KLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 491 ~~~~~~g~~~~~~~~~~~~~~ 511 (543)
++.++.|.+.++|.++|++++
T Consensus 91 ~~~~~~G~~~~~l~~~l~~~l 111 (112)
T 1syr_A 91 SVDTLLGANDSALKQLIEKYA 111 (112)
T ss_dssp EEEEEESCCHHHHHHHHHTTC
T ss_pred EEEEEeCCCHHHHHHHHHHhh
Confidence 999999999999999999865
No 116
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=99.77 E-value=2.9e-19 Score=146.54 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=96.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..++..+....++..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++
T Consensus 8 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 87 (140)
T 3hz4_A 8 IIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCH 87 (140)
T ss_dssp EEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEET
T ss_pred eEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeC
Confidence 455555444446777899999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCCCCCCCccccCCCCCCccccccccCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSPVYKLPLVTLACSPFGWFSTAVVTGES 539 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (543)
|+++.++.|. +.++|.++|++++........ .+.|.+|-++--|+|--
T Consensus 88 G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 136 (140)
T 3hz4_A 88 GRPVWEQVGQIYPSILKNAVRDMLQHGEECIR---KSTPVGQDITGYVEGHH 136 (140)
T ss_dssp TEEEEEEESSCCHHHHHHHHHHHHHHHHHHHH---TSBC-------------
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhcccccCcc---cccccCccceeeecccc
Confidence 9999999999 999999999988754322211 12444566666666643
No 117
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.77 E-value=1.8e-18 Score=135.14 Aligned_cols=101 Identities=21% Similarity=0.418 Sum_probs=89.3
Q ss_pred eEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..++. +.|. .....++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 4 v~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (108)
T 2trx_A 4 IIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82 (108)
T ss_dssp EEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEE
T ss_pred ceecch-hhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEe
Confidence 344444 4454 455678899999999999999999999999999997 4999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+|+++.++.|. +.+++.++|++.+
T Consensus 83 ~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 83 NGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCHHHHHHHHHHhh
Confidence 99999999999 9999999998754
No 118
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=4.8e-18 Score=146.90 Aligned_cols=173 Identities=13% Similarity=0.036 Sum_probs=138.5
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
.....++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009096 126 YFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL 205 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~ 205 (543)
+...|++++|+..++++ +...|.. ..++..+|.++...
T Consensus 86 ~~~~~~~~~A~~~~~~~-----------------------------------------~~~~~~~-~~~~~~~a~~~~~~ 123 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKV-----------------------------------------AEANPIN-FNVRFRLGVALDNL 123 (186)
T ss_dssp HHHHTCHHHHHHHHHHH-----------------------------------------HHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHH-----------------------------------------HhcCcHh-HHHHHHHHHHHHHc
Confidence 99988888888777544 3444443 45566667777777
Q ss_pred cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH
Q 009096 206 HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 206 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (543)
|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++..+|++.
T Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 124 GRFDEAIDSFKIALGLRPNEGK------VHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHHHhcCccchH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 7777777777777666666533 333347777777777777777777777666654
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=6.6e-18 Score=135.65 Aligned_cols=102 Identities=31% Similarity=0.453 Sum_probs=95.9
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+|..++.+..+|..+++.|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCC
Q 009096 121 RLASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a 142 (543)
.+|.++..+|++++|+..|+++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999988888777443
No 120
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.77 E-value=1.7e-18 Score=136.13 Aligned_cols=97 Identities=23% Similarity=0.376 Sum_probs=90.1
Q ss_pred hhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 415 SLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 415 ~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.+.|.+.+ ..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++|+++
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 456666766 7789999999999999999999999999999986 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcC
Q 009096 493 KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~ 511 (543)
.++.|. +.+++.++|++++
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHh
Confidence 999999 9999999998764
No 121
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=99.77 E-value=1.8e-18 Score=137.16 Aligned_cols=101 Identities=25% Similarity=0.378 Sum_probs=92.6
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||+++++
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 93 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEEEEe
Confidence 556677677887776 6889999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+++.++.|.+++++.++|++++
T Consensus 94 ~G~~~~~~~G~~~~~l~~~l~~~l 117 (117)
T 2xc2_A 94 NGEKVGDVVGASIAKVEDMIKKFI 117 (117)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHC
T ss_pred CCcEEEEEeCCCHHHHHHHHHHhC
Confidence 999999999999999999998753
No 122
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=99.77 E-value=3e-18 Score=133.49 Aligned_cols=96 Identities=23% Similarity=0.442 Sum_probs=89.5
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+.+.+.+.+ .++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||++++++|+.+.
T Consensus 9 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 9 TDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp CTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred CHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 456677777 889999999999999999999999999999987 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcC
Q 009096 494 EMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~ 511 (543)
++.|. +.+++.++|++++
T Consensus 88 ~~~g~~~~~~l~~~l~~~l 106 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKHL 106 (106)
T ss_dssp EEESCCCHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHhC
Confidence 99999 9999999998763
No 123
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=5e-19 Score=164.41 Aligned_cols=234 Identities=13% Similarity=-0.013 Sum_probs=148.1
Q ss_pred HhcCCHHHHHHHHHHHHhc--------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHH
Q 009096 59 YRKGNFVEALKLYDKAISM--------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--------DPGYNRAHQRL 122 (543)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 122 (543)
...|++++|+..|+++++. +|....++..+|.++...|++++|+..|+++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888888888773 3667889999999999999999999999999987 35667889999
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.++...|++++|+..|++++. .+.+....+......++..+|.++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~~~~~~~~~~~~~~~la~~~ 137 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE----------------------------------IREKVLGKFHPDVAKQLNNLALLC 137 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH----------------------------------HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH----------------------------------HHHHHcCCCChHHHHHHHHHHHHH
Confidence 9999999999999998866643 111111111111234455566666
Q ss_pred HHccChhHHHHHhhcCCCC-----CCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC---------CCcHHH
Q 009096 203 LKLHQNEDADSCLSNMPKF-----EHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD---------YSNVEI 268 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~ 268 (543)
...|++++|+..++++++. .+++ ......+..+|.++...|++++|+..+++++... +.....
T Consensus 138 ~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 138 QNQGKAEEVEYYYRRALEIYATRLGPDD---PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 6666666666666666554 1111 1123345566888888888888888888888652 222222
Q ss_pred HHHHHhHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 269 ASVLTNVKMVVRARTRGNNLFS------SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+.. .+..... ...+.++...++......|....++..+|.+|..+|++++|+.+|+++++.
T Consensus 215 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 215 WMH------------AEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHH------------HHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH------------HHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 211 2333322 223445555555554455556667777777777777777777777777654
No 124
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=99.77 E-value=1.9e-18 Score=137.72 Aligned_cols=104 Identities=30% Similarity=0.507 Sum_probs=96.9
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
..+..+.+.+.|.+.+..++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++
T Consensus 15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 94 (121)
T 2j23_A 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94 (121)
T ss_dssp CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence 34677888899999998889999999999999999999999999999976 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|++|+++.++.|.+++++.++|++++
T Consensus 95 ~~~G~~~~~~~G~~~~~l~~~l~~~l 120 (121)
T 2j23_A 95 FKNGQKIDTVVGADPSKLQAAITQHS 120 (121)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred EECCeEEeeEcCCCHHHHHHHHHHhh
Confidence 99999999999999999999998764
No 125
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=99.77 E-value=8.3e-19 Score=142.72 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=91.5
Q ss_pred CCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------cCcHHHHHHcCC
Q 009096 407 SGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV---------EESLAIAKSEGV 477 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~---------~~~~~~~~~~~v 477 (543)
.+.+..+ +.+.|.+.+.. +++|+||++||++|+.+.|.+++++++++ +.|+.+|+ +++++++++|+|
T Consensus 15 ~~~v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v 90 (135)
T 3emx_A 15 DGRLIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV 90 (135)
T ss_dssp TTEEEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred cCceeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence 3445555 45677777765 99999999999999999999999999998 99999999 889999999999
Q ss_pred CcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 478 RTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 478 ~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
.++||+++|++|+++.++.|. +.+.++++++++...+....
T Consensus 91 ~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~~~~ 132 (135)
T 3emx_A 91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEGHHH 132 (135)
T ss_dssp CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-------
T ss_pred ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999 99999999999987765443
No 126
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.77 E-value=1.3e-18 Score=139.92 Aligned_cols=102 Identities=20% Similarity=0.375 Sum_probs=90.4
Q ss_pred CeEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 409 EVEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 409 ~~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+..++. +.|. .++..++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++|
T Consensus 23 ~v~~l~~-~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 101 (128)
T 2o8v_B 23 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 101 (128)
T ss_dssp CSEEECT-TTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE
T ss_pred ccEecCh-hhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence 3455544 5555 4557789999999999999999999999999999974 99999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+++.++.|. +.++|.++|++.+
T Consensus 102 ~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 102 KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 999999999999 9999999998754
No 127
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=99.77 E-value=2.2e-18 Score=135.33 Aligned_cols=102 Identities=25% Similarity=0.356 Sum_probs=90.5
Q ss_pred CeEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEE
Q 009096 409 EVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+..++. +.|.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++ .+..++++|+|.++||+++
T Consensus 6 ~v~~l~~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 84 (111)
T 2pu9_C 6 KVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 84 (111)
T ss_dssp SEEEECT-TTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSEEEE
T ss_pred ccEEech-HHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeEEEE
Confidence 3555554 55666665 478999999999999999999999999999999999999998 7899999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++|+++.++.|.+.+++.++|++++
T Consensus 85 ~~~G~~~~~~~G~~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 85 LKENSVVGEVTGAKYDKLLEAIQAAR 110 (111)
T ss_dssp ESSSSEEEEEESSCHHHHHHHHHHHH
T ss_pred EeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence 99999999999998999999998754
No 128
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=99.77 E-value=1.9e-18 Score=136.90 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=91.4
Q ss_pred eEEee-hhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEIS-SLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~-~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+. +...+.+ +...++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|+
T Consensus 5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 84 (118)
T 2f51_A 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84 (118)
T ss_dssp SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence 44454 5566664 445688999999999999999999999999999988999999999999999999999999999999
Q ss_pred C----CeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 488 N----GEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 488 ~----g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+ |+++.++.|...++|++.|+++..+
T Consensus 85 ~~~~~G~~~~~~~G~~~~~l~~~~~~~~~~ 114 (118)
T 2f51_A 85 KEGNEIKTLDQFVGADVSRIKADIEKFKHH 114 (118)
T ss_dssp EETTEEEEEEEEESCCHHHHHHHHHHHC--
T ss_pred CCCCcceEEEeecCCCHHHHHHHHHHhhhc
Confidence 8 9999999999888899999987654
No 129
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=99.77 E-value=3.2e-19 Score=144.98 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=75.1
Q ss_pred hhhhhccCCCCceeeeeeCCC--CccccchhHhHHHHHhhCCCeE--EEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEAS--SEKCEEISPFVNLLCVRYPYVH--FFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~~~~--~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.|++.+...+.++++|+++| |++|+.+.|.|++++++++++. |++||+|++++++.+|+|.++||+++|++|+++
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v 104 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE
Confidence 677777877778899999877 9999999999999999996688 999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
.++.|. +.++|.++|++++..+..-.
T Consensus 105 ~~~~G~~~~~~l~~~i~~~l~~~~~~~ 131 (142)
T 2es7_A 105 GALSGIHPWAELLTLMRSIVDTPAAQE 131 (142)
T ss_dssp -CEESCCCHHHHHHHHHHHHC------
T ss_pred EEEeCCCCHHHHHHHHHHHhcccccCC
Confidence 999998 99999999999876554433
No 130
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.77 E-value=2.4e-18 Score=133.68 Aligned_cols=95 Identities=24% Similarity=0.383 Sum_probs=88.3
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEM 495 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 495 (543)
+.|...+..++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|||.++||++++++|+++.++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQL 87 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEEE
Confidence 45667777889999999999999999999999999999976 99999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhcC
Q 009096 496 INP-SHQFLEDSANLAP 511 (543)
Q Consensus 496 ~g~-~~~~~~~~~~~~~ 511 (543)
.|. +.+++.++|++++
T Consensus 88 ~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 88 IGYQPKEQLEAQLADVL 104 (105)
T ss_dssp ESCCCHHHHHHHTTTTT
T ss_pred ecCCCHHHHHHHHHHHh
Confidence 998 9999999998765
No 131
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=141.77 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=94.0
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+ +.+.|.+.+..+++++|+||++||++|+.+.|.+.++++++++ +.|+.+|++++..++++|+|.++||+++
T Consensus 19 v~~l-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 97 (140)
T 2dj1_A 19 VWVL-NDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97 (140)
T ss_dssp EEEC-CTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEE
T ss_pred CEEc-ChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEE
Confidence 4444 5567777888889999999999999999999999999988743 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
|++|+ +.++.|. +.++|.++|++++.++...+
T Consensus 98 ~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 130 (140)
T 2dj1_A 98 LKKGQ-AVDYDGSRTQEEIVAKVREVSQPDWTPP 130 (140)
T ss_dssp EETTE-EEECCSCCCHHHHHHHHHHHHSSSCCCC
T ss_pred EECCc-EEEcCCCCCHHHHHHHHHHhcCCCCCCC
Confidence 99999 7788898 99999999999887655444
No 132
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.6e-18 Score=164.84 Aligned_cols=288 Identities=12% Similarity=0.039 Sum_probs=174.3
Q ss_pred CCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 31 NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 31 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
..|+..+.++ .++..+...+..+...|+|++|+.+++.+.+..+ ++.+...++.+|.++|++.++.+.++.
T Consensus 49 ~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~--- 119 (449)
T 1b89_A 49 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING--- 119 (449)
T ss_dssp ------------------------------------------------------------------CHHHHTTTTTC---
T ss_pred HHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC---
Confidence 4577667543 4777999999999999999999999999988644 477888999999999999999988852
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
|+ ..+|..+|..+...|+|++|..+|.++- .+..++.++.++|+|++|++.+.++ .
T Consensus 120 --pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---------------n~~~LA~~L~~Lg~yq~AVea~~KA------~ 175 (449)
T 1b89_A 120 --PN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKA------N 175 (449)
T ss_dssp --C-----------------CTTTHHHHHHHTT---------------CHHHHHHHHHTTTCHHHHHHHHHHH------T
T ss_pred --Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh---------------hHHHHHHHHHHhccHHHHHHHHHHc------C
Confidence 53 4599999999999999999999998773 3788999999999999999999999 2
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+..|.....++...|+++.|..+...+. ..|+.. . .....|.+.|++++|+.++++++.+++.+...+.
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l---~------~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft 245 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL---E------ELINYYQDRGYFEELITMLEAALGLERAHMGMFT 245 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHH---H------HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhH---H------HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 37888889999999999999988877643 555541 1 2367899999999999999999999999988875
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHccCHHHHHHHHHHHHhh----
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMGLWENSIEDCNVALRI---- 341 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 341 (543)
.+. ...+-++-++..+.++.|...+.+.| .++..|..+..+|.+-++|+.|+...-+....
T Consensus 246 el~----------il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~ 315 (449)
T 1b89_A 246 ELA----------ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 315 (449)
T ss_dssp HHH----------HHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCH
T ss_pred HHH----------HHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhh
Confidence 431 23444667889999999999998888 88999999999999999999999876655433
Q ss_pred --------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 342 --------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 342 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
.+.+.+.++.....|. +....++..+..++
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 5678888888888877 56666777777777
No 133
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.76 E-value=2.1e-18 Score=135.17 Aligned_cols=98 Identities=22% Similarity=0.329 Sum_probs=91.4
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.+++.+..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++|+++
T Consensus 9 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (109)
T 3tco_A 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLV 88 (109)
T ss_dssp CCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred ecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEE
Confidence 45577778887799999999999999999999999999999985 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcC
Q 009096 493 KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~ 511 (543)
.++.|. +.+++.++|++++
T Consensus 89 ~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 89 DSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EeeeccCCHHHHHHHHHHHh
Confidence 999999 9999999999865
No 134
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=99.76 E-value=2.5e-18 Score=143.08 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=94.2
Q ss_pred CCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 407 SGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+....++ ...|.+.+..+++++|+||++||++|+.+.|.|++++++++ ++.|+++|++++++++++|+|.++||+++
T Consensus 46 ~~~~~~l~-~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 124 (155)
T 2ppt_A 46 TGKVAGID-PAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFIL 124 (155)
T ss_dssp CSSEEECC-HHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred CCCCccCC-HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence 44455554 46676776778899999999999999999999999999997 59999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|++|+++.++.|. +.++|.++|++++..
T Consensus 125 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 153 (155)
T 2ppt_A 125 FHKGRELARAAGARPASELVGFVRGKLGA 153 (155)
T ss_dssp EETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence 9999999999998 999999999987653
No 135
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=99.76 E-value=4.1e-18 Score=132.66 Aligned_cols=101 Identities=26% Similarity=0.378 Sum_probs=91.8
Q ss_pred EEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhC-CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 411 EEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 411 ~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
..+++.+.+.+.+. .++++++.||++||++|+.+.|.++++++++ +++.|+.+|+++++.++++|+|.++||+++++
T Consensus 3 ~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (106)
T 1xwb_A 3 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82 (106)
T ss_dssp EECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEc
Confidence 45566677777776 6889999999999999999999999999999 67999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+.+.++.|.+++++.++|++++
T Consensus 83 ~G~~~~~~~g~~~~~l~~~i~~~l 106 (106)
T 1xwb_A 83 NGVKVEEFAGANAKRLEDVIKANI 106 (106)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHTC
T ss_pred CCcEEEEEcCCCHHHHHHHHHHhC
Confidence 999999999998899999998753
No 136
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.76 E-value=2.3e-18 Score=137.01 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=96.2
Q ss_pred CCeEEeehhhhhhhccCC----CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAISS----PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~----~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+.. ++++++.||++||++|+.+.|.++++.++++++.|+.+|++.++.++++|+|.++||+
T Consensus 6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 85 (118)
T 2vm1_A 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTF 85 (118)
T ss_dssp CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBSEE
T ss_pred CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCcEE
Confidence 346677777888887754 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+++++|+++.++.|.+.+++.++|++++..
T Consensus 86 ~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 86 LFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115 (118)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHHC-
T ss_pred EEEeCCeEEEEecCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999987654
No 137
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=2e-16 Score=147.18 Aligned_cols=262 Identities=12% Similarity=-0.057 Sum_probs=197.0
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
+...|.-.+++-.........+..++|+.++.++|.++|++..+|+.++.++..+| .+++++..+.+++..+|++..+|
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 34555556666666666666777789999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHh-C-CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 120 QRLASLYFRL-G-QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 120 ~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
..++.++..+ + ++ ++++..++++++.+|.+ ..+|..
T Consensus 127 ~hR~wlL~~l~~~~~-----------------------------------------~~EL~~~~k~L~~dpkN-y~AW~~ 164 (349)
T 3q7a_A 127 HHRLLLLDRISPQDP-----------------------------------------VSEIEYIHGSLLPDPKN-YHTWAY 164 (349)
T ss_dssp HHHHHHHHHHCCSCC-----------------------------------------HHHHHHHHHHTSSCTTC-HHHHHH
T ss_pred HHHHHHHHHhcCCCh-----------------------------------------HHHHHHHHHHHHhCCCC-HHHHHH
Confidence 9999887765 3 22 23344445566666555 444444
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
++.++...+.++. .+ ...+.+++++++++++.+|.+..+|..
T Consensus 165 R~wvl~~l~~~~~-------------~~-------------------~~~~~eELe~~~k~I~~dp~N~SAW~~------ 206 (349)
T 3q7a_A 165 LHWLYSHFSTLGR-------------IS-------------------EAQWGSELDWCNEMLRVDGRNNSAWGW------ 206 (349)
T ss_dssp HHHHHHHHHHTTC-------------CC-------------------HHHHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHhccccc-------------cc-------------------hhhHHHHHHHHHHHHHhCCCCHHHHHH------
Confidence 4544444443321 00 011238999999999999999999743
Q ss_pred HHHHHHHHHHHHhcCC-------HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH--------------------HH
Q 009096 278 VVRARTRGNNLFSSRR-------YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW--------------------EN 330 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~ 330 (543)
++.++...++ ++++++++.+++..+|++..+|+++..++...|+. ..
T Consensus 207 ------R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3q7a_A 207 ------RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIET 280 (349)
T ss_dssp ------HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---------
T ss_pred ------HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchh
Confidence 6888888886 79999999999999999999999999999887764 33
Q ss_pred HHHHHHHHHhhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCChHHHHHHHH
Q 009096 331 SIEDCNVALRIQ------PNYTKALLRRAVSNEKLGRWSEAVRDYEALR-RELPGDNEVAESLHN 388 (543)
Q Consensus 331 A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~ 388 (543)
-...+...+... +.++.++..++.+|...|+.++|.+.++... +.+|-....|.....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 333333333322 5678999999999999999999999999987 778988887765543
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=7.2e-18 Score=139.40 Aligned_cols=116 Identities=14% Similarity=0.044 Sum_probs=110.6
Q ss_pred CCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009096 34 NNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113 (543)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (543)
...+++++..+|.++++++.+|..++..|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++++++|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
+++.+|+++|.+|..+|++++|+..|+++++ .+++.
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999988 55554
No 139
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=99.76 E-value=1.5e-18 Score=138.46 Aligned_cols=102 Identities=21% Similarity=0.411 Sum_probs=85.6
Q ss_pred CeEEeehhhhhh-hccCCCCceeeeeeCCCCc--------------cccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHH
Q 009096 409 EVEEISSLEKFK-AAISSPGVSLVHFKEASSE--------------KCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIA 472 (543)
Q Consensus 409 ~~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~--------------~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~ 472 (543)
.+..++. +.|. .++..+++++++||++||+ +|+.+.|.++++++++++ +.|+++|+++++.++
T Consensus 4 ~v~~l~~-~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~ 82 (123)
T 1oaz_A 4 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 82 (123)
T ss_dssp SCEECCS-TTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred ccEecCh-hhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence 3444544 4454 5567789999999999999 999999999999999974 999999999999999
Q ss_pred HHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 473 KSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|||.++||+++|++|+++.++.|. +.+++.++|++++
T Consensus 83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp GGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred HHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999999999865
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=3.2e-17 Score=147.56 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=181.6
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHccChhHHHHHhhcCCCCCCCCChhH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK-------AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ 229 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 229 (543)
+...+..+.-+ ..+++..|...|.+++..+|+. ..+|..+ +.++...++..+++..+.+.+.+.|..-...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 44456666665 5899999999999999999998 7888888 8999999999999999999999888764333
Q ss_pred HH---------------HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 230 VK---------------FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 230 ~~---------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
.. -...+..+.++...|++++|.+.|..++...|++. .. +.+|.++++.++|
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~------------~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VA------------WMKAVVYGAAERW 151 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HH------------HHHHHHHHHTTCH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HH------------HHHHHHHHHcCCH
Confidence 33 12334458899999999999999999999888777 43 3479999999999
Q ss_pred HHHHHHHHHHhccCCCC--hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDSYN--SILYCNRAICWSKMGLWENSIEDCNVALRIQ--PN-YTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
++|+..|+++....+.. ..+++++|.++..+|++++|+..|++++.-. |. .+++++++|.++.++|+.++|...|
T Consensus 152 ~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999887753221 4589999999999999999999999998654 55 6689999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHH
Q 009096 370 EALRRELPGDNEVAESLH 387 (543)
Q Consensus 370 ~~al~~~p~~~~~~~~l~ 387 (543)
++++..+|+ +.+...|.
T Consensus 232 ~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 232 EWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHSCC-HHHHHHHH
T ss_pred HHHHhcCCc-HHHHHHHh
Confidence 999999999 88776653
No 141
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.76 E-value=4.7e-18 Score=135.06 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=90.5
Q ss_pred eEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
.....+.+.|.+ +...++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 14 ~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 93 (119)
T 1w4v_A 14 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93 (119)
T ss_dssp EEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred EEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEe
Confidence 344455566665 44668899999999999999999999999999985 5999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+|+++.++.|. +.+++.++|++++
T Consensus 94 ~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 94 NGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 99999999999 9999999998764
No 142
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=2.4e-18 Score=162.05 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-- 311 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-- 311 (543)
.+..+|.++...|++++|+.+|++++.+.+...... ..+..+.++|.++.. |++++|+.+|++++++.|..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~------~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD------TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH------HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC
Confidence 344447778888888888888888876643321110 011224568999988 99999999999999887643
Q ss_pred ----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 312 ----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 312 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..++.++|.+|..+|++++|+.+|++++.+.|++ ..++..+|.++..+|++++|+.+|++++ ++|....
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 5788899999999999999999999999886543 3478889999999999999999999999 9997654
Q ss_pred H
Q 009096 382 V 382 (543)
Q Consensus 382 ~ 382 (543)
.
T Consensus 230 ~ 230 (307)
T 2ifu_A 230 S 230 (307)
T ss_dssp S
T ss_pred C
Confidence 4
No 143
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.76 E-value=5.1e-18 Score=132.31 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=87.2
Q ss_pred hhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 416 LEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 416 ~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
.+.|.+ ....++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|||.++||++++++|+++.
T Consensus 8 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (107)
T 1dby_A 8 DDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCE 87 (107)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEEE
Confidence 345555 446688999999999999999999999999999975 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcC
Q 009096 494 EMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~ 511 (543)
++.|. +.+++.++|++++
T Consensus 88 ~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 88 TIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEESCCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 99998 9999999999865
No 144
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.76 E-value=2.5e-18 Score=135.66 Aligned_cols=104 Identities=26% Similarity=0.447 Sum_probs=94.8
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.++++.++++++.|+.+|+++++.++++|+|.++||+
T Consensus 4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 83 (113)
T 1ti3_A 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccEE
Confidence 44667777788877775 37899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++++|+++.++.|.+++++.++|++++
T Consensus 84 ~~~~~G~~~~~~~g~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 84 IFLKDGKLVDKTVGADKDGLPTLVAKHA 111 (113)
T ss_dssp EEEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred EEEeCCEEEEEEecCCHHHHHHHHHHhh
Confidence 9999999999999998899999998764
No 145
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=99.76 E-value=8.3e-18 Score=133.09 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=91.7
Q ss_pred CCeEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+.+..++. +.|.. ....++++++.||++||++|+.+.|.++++++++++ +.|+.+|++.++.++++|+|.++||+++
T Consensus 7 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 85 (115)
T 1thx_A 7 KGVITITD-AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL 85 (115)
T ss_dssp CSEEECCG-GGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred CceEEeec-cchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEE
Confidence 34555544 55554 456788999999999999999999999999999975 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|++|+++.++.|. +.+++.++|++++.
T Consensus 86 ~~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 86 VKGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp EETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred EcCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 9999999999998 99999999998654
No 146
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=99.76 E-value=6.9e-18 Score=131.62 Aligned_cols=100 Identities=19% Similarity=0.371 Sum_probs=88.5
Q ss_pred eEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..++. +.|. .....++++++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|+
T Consensus 4 v~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 2i4a_A 4 TLAVSD-SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVR 82 (107)
T ss_dssp EEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEE
T ss_pred eeecch-hhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEe
Confidence 334444 4444 444678899999999999999999999999999997 5999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+|+++.++.|. +.+++.++|+++
T Consensus 83 ~G~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 83 DGKVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHT
T ss_pred CCEEEEEecCCCCHHHHHHHHHhc
Confidence 99999999998 999999999875
No 147
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=2.6e-18 Score=159.55 Aligned_cols=237 Identities=13% Similarity=0.046 Sum_probs=166.6
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHH
Q 009096 94 ALGRLTEAVSDCEEAVRL--------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCA 165 (543)
Q Consensus 94 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (543)
..|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------- 71 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA--------------------- 71 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------------------
Confidence 467788888888888774 256678899999999999999999998866542
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC-----CCCChhHHHHHHHHHHHH
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE-----HYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~ 240 (543)
...+....++.....++..+|.++...|++++|+..+++++... ++++ .....+..+|.
T Consensus 72 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~ 135 (283)
T 3edt_B 72 -------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP---DVAKQLNNLAL 135 (283)
T ss_dssp -------------HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred -------------HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHH
Confidence 11111111111124456667777777777777777777776652 2221 22345667799
Q ss_pred HHHhhcChHHHHHHHHHHhhc-----CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------
Q 009096 241 FNISELRFENAVSSAEKAGLL-----DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-------- 307 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------- 307 (543)
++...|++++|+..+++++.. .++++..... +..+|.++...|++++|+.+|+++++.
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 206 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT---------KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGS 206 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH---------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987 2333332222 245899999999999999999999986
Q ss_pred -CCCChhHHhHHHHHHHHccC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 308 -DSYNSILYCNRAICWSKMGL------WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 308 -~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
.+.....+..++..+...+. +..+...++......|....++..+|.++...|++++|+.+|++++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 207 VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55566778888877776554 4455555555444556677899999999999999999999999999764
No 148
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.76 E-value=4.2e-18 Score=137.07 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=91.7
Q ss_pred hccCCCCceeeeeeCCCCccccchhHhHHHHHhhC-CCeEEEEEe--CcCcHHHHHHcCCCcccEEEEEE-CCeEEEEEc
Q 009096 421 AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVD--VEESLAIAKSEGVRTVPTFKIYK-NGEKLKEMI 496 (543)
Q Consensus 421 ~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~~~~~~~d--~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~ 496 (543)
.....++++++.||++||++|+.+.|.++++.+++ +++.|+.+| ++++.+++++|+|.++||+++|+ +|+++.++.
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~ 100 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQ 100 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEec
Confidence 44556789999999999999999999999999999 569999999 99999999999999999999999 999999999
Q ss_pred CC-CHHHHHHHHHhcCCCCCCCCcc
Q 009096 497 NP-SHQFLEDSANLAPSPVYKLPLV 520 (543)
Q Consensus 497 g~-~~~~~~~~~~~~~~~~~~~~~~ 520 (543)
|. +.+++.++|+++..++...+++
T Consensus 101 G~~~~~~l~~~l~~~~~~~~~~~~~ 125 (126)
T 2l57_A 101 GLMRKNNIETILNSLGVKEGHHHHH 125 (126)
T ss_dssp SCCCHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCHHHHHHHHHHHhccccccccC
Confidence 98 9999999999998887766654
No 149
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.75 E-value=2.8e-18 Score=138.38 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=86.9
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.+......+++++|.||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||++++++|+++.+
T Consensus 32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 111 (128)
T 3ul3_B 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLAR 111 (128)
T ss_dssp CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEE
Confidence 34455556678999999999999999999999999999997 49999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhc
Q 009096 495 MINP-SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~ 510 (543)
+.|. +.+++.++|+++
T Consensus 112 ~~G~~~~~~l~~~l~~~ 128 (128)
T 3ul3_B 112 KDHFVSSNDLIALIKKH 128 (128)
T ss_dssp ESSCCCHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHhC
Confidence 9998 999999999864
No 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=1.6e-17 Score=156.37 Aligned_cols=239 Identities=10% Similarity=-0.006 Sum_probs=168.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHH
Q 009096 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA-LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHH 138 (543)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (543)
..|++++|..+++++.+..+.. + +. .+++++|+..|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---~-------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---F-------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---S-------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc---c-------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4677888888888887765532 1 11 47788888877765 4567777777777777
Q ss_pred hcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 139 LCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
|.+++. ++...++...+ ...+..+|.+|..+|++++|+.+|+++
T Consensus 59 ~~~al~---------------------~~~~~~~~~~~---------------a~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 59 YLQEAE---------------------AHANNRSLFHA---------------AKAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHH---------------------HHHHTTCHHHH---------------HHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHHHH---------------------HHHHcCCHHHH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 755432 01111221111 345566778888888888888888888
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHH
Q 009096 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEAC 298 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~ 298 (543)
+.+.+...........+..+|.++.. |++++|+.+|++++.+.|...... .....+.++|.++...|+|++|+
T Consensus 103 l~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 103 SVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHcCCHHHHH
Confidence 77765554444445567777999999 999999999999998876432111 01222456899999999999999
Q ss_pred HHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHccCHHHHHH
Q 009096 299 SAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTK-----ALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 299 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 367 (543)
.+|++++++.|.+ ..++..+|.++..+|++++|+..|++++ ++|+... .+..++..+ ..|+.+.+..
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999986644 3478889999999999999999999999 9997642 344555544 4566554443
No 151
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.75 E-value=5.4e-18 Score=137.87 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-------Chh-----HHhHHHHHHHHccCHHHHHHHHHHHHhh--
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-------NSI-----LYCNRAICWSKMGLWENSIEDCNVALRI-- 341 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~-- 341 (543)
..+..+++.|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34555678999999999999999999999999999 433 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 342 -----QPNYTKAL----LRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 342 -----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+...++..+.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~ 154 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA 154 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999988888887777765443
No 152
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.75 E-value=4.3e-18 Score=136.22 Aligned_cols=103 Identities=25% Similarity=0.441 Sum_probs=92.4
Q ss_pred eEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
...+.+.+.|...+. .++++++.||++||++|+.+.|.++++.++++++.|+.+|++++++++++|+|.++||+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (122)
T 2vlu_A 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLF 93 (122)
T ss_dssp CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence 444556677777664 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
+++|+++.++.|...+++.++|++++.
T Consensus 94 ~~~G~~~~~~~G~~~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 94 MKEGDVKDRVVGAIKEELTAKVGLHAA 120 (122)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHHS
T ss_pred EeCCEEEEEEeCcCHHHHHHHHHHHhc
Confidence 999999999999878999999988653
No 153
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.75 E-value=3.9e-18 Score=139.92 Aligned_cols=106 Identities=21% Similarity=0.406 Sum_probs=96.0
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.|.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|||.++||+
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 103 (139)
T 3d22_A 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTF 103 (139)
T ss_dssp TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESEE
T ss_pred CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccEE
Confidence 44667777788887763 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+++++|+++.++.|.+.+++.++|++++..
T Consensus 104 ~~~~~G~~~~~~~G~~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 104 FFLRDGQQVDKLVGANKPELHKKITAILDS 133 (139)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred EEEcCCeEEEEEeCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999987643
No 154
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.75 E-value=1.4e-16 Score=154.72 Aligned_cols=278 Identities=13% Similarity=-0.009 Sum_probs=190.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc------hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--------CC
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN------AAYRSNRAATLTALGRLTEAVSDCEEAVRLD--------PG 114 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~ 114 (543)
..+..+|..+...|++++|+..+++++...|.. ..++..+|.++...|++++|+..+++++... |.
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 367889999999999999999999999876543 2447889999999999999999999999875 33
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC----C
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD----S 190 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~ 190 (543)
...++..+|.++...|++++|...+++++. ..+. .
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------------------------------~~~~~~~~~ 172 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIE-----------------------------------------VLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------HTTTSCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------------------------------HhhccCcHH
Confidence 445677788888888888888888766543 1111 0
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCCh-hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP-SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
....+..+|.++...|++++|...+++++...+.... ..........++.++...|++++|...+++++...|......
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 1234445566666666666666666665543222111 111111112234556778888888888888877665431110
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY------NSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
. ..+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...+++++.+.+
T Consensus 253 ~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 253 Q--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp H--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 0 00134688899999999999999998876432 235788899999999999999999999998754
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 344 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.. .....+...| +.....+++++...|-+.-.
T Consensus 325 ~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 325 RT-----GFISHFVIEG--EAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HH-----CCCHHHHTTH--HHHHHHHHHHHHTTCSCHHH
T ss_pred cc-----cHHHHHHHcc--HHHHHHHHHHHhCCCCchHH
Confidence 21 1122333444 67778888888888875433
No 155
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=99.75 E-value=9.4e-18 Score=134.64 Aligned_cols=102 Identities=25% Similarity=0.393 Sum_probs=90.2
Q ss_pred CeEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEE
Q 009096 409 EVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+..+++ +.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++ ++++++++|+|.++||+++
T Consensus 19 ~v~~l~~-~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 97 (124)
T 1faa_A 19 KVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 97 (124)
T ss_dssp SEEEECT-TTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEE
T ss_pred ceEEecc-hhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeeeEEEE
Confidence 3455544 45555554 578999999999999999999999999999999999999998 6899999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++|+++.++.|...+++.++|+++.
T Consensus 98 ~~~G~~~~~~~G~~~~~l~~~i~~~~ 123 (124)
T 1faa_A 98 LKENSVVGEVTGAKYDKLLEAIQAAR 123 (124)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred EeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence 99999999999998999999998764
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.75 E-value=1.2e-17 Score=137.77 Aligned_cols=134 Identities=14% Similarity=0.189 Sum_probs=120.0
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHH
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSI 332 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 332 (543)
..|++++..+|++...+ +.+|..+...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQL------------YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHH------------HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH
Confidence 46777888888877764 457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 333 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
..|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.......++...++..+.
T Consensus 73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888877777777765543
No 157
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=99.75 E-value=1e-17 Score=133.82 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=91.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..+++.+....++..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++
T Consensus 14 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 93 (121)
T 2i1u_A 14 TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKD 93 (121)
T ss_dssp SEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEEC
Confidence 445555444445667788999999999999999999999999999964 9999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|+++.++.|. +.+++.++|++++.
T Consensus 94 g~~~~~~~G~~~~~~l~~~l~~~l~ 118 (121)
T 2i1u_A 94 GQPVKRIVGAKGKAALLRELSDVVP 118 (121)
T ss_dssp TEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHh
Confidence 9999999999 89999999998764
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.75 E-value=8.8e-18 Score=144.18 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
..+..+|..+...|++++|+..|+++++.+|++... ++.+|.++...|++++|+..+++++..+| ++......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a------~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDV------KLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHH------HHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH------HHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 345667888999999999999999999999888554 44448899999999999999999999888 66543221
Q ss_pred HhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHH
Q 009096 273 TNVKMVVRARTRGNN-LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY--TKAL 349 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~ 349 (543)
+.+ +...+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++
T Consensus 80 ------------~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 80 ------------AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp ------------HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred ------------HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 222 1222334468999999999999999999999999999999999999999999999876 5699
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 350 LRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 350 ~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
..+|.++..+|+.++|+..|++++.
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999998875
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.75 E-value=4.5e-16 Score=144.88 Aligned_cols=248 Identities=9% Similarity=-0.059 Sum_probs=189.5
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcC-CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHc-C-CHHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKG-NFVEALKLYDKAISMSPENAAYRSNRAATLTAL-G-RLTEAVSDC 105 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~ 105 (543)
....++....+++..+|.+..+|+.++.++...| .+++++.++.+++..+|++..+|+.++.++... + ++++++..+
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3345777888999999999999999999999999 599999999999999999999999999999998 8 999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 106 EEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
.++++.+|.+..+|...+.++...|.++.+ + ...+.++++.++++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~-----------~----------------------~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRI-----------S----------------------EAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCC-----------C----------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcccccc-----------c----------------------hhhHHHHHHHHHHHHH
Confidence 999999999999999999998887654310 0 0123567788888888
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
.+|.+ ..+|..++.++..++... .. ...++++++++.+++..+|++
T Consensus 196 ~dp~N-~SAW~~R~~lL~~l~~~~--------------~~-------------------~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 196 VDGRN-NSAWGWRWYLRVSRPGAE--------------TS-------------------SRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HCTTC-HHHHHHHHHHHTTSTTCC--------------CC-------------------HHHHHHHHHHHHHHHHHCTTC
T ss_pred hCCCC-HHHHHHHHHHHHhccccc--------------cc-------------------hHHHHHHHHHHHHHHHhCCCC
Confidence 87776 777776666666555420 00 012578999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhccC------CCChhHHhHHH
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRR--------------------YSEACSAYGEGLKYD------SYNSILYCNRA 319 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~--------------------~~~A~~~~~~al~~~------p~~~~~~~~la 319 (543)
..+|..+ ..++...|+ ..+-.+.....+... +.++.++..++
T Consensus 242 ~SaW~Yl------------r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 242 VSAWNYL------------RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHHH------------HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHHH------------HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 9998654 333444433 233333333333322 46678999999
Q ss_pred HHHHHccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 009096 320 ICWSKMGLWENSIEDCNVAL-RIQPNYTKALLRRAVS 355 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 355 (543)
.+|...|+.++|.++|+... +.+|-....|..++..
T Consensus 310 d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 99999999999999999987 6788877777766554
No 160
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=99.74 E-value=6e-18 Score=140.32 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=93.1
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..+ +.+.+...+..+++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|++
T Consensus 40 v~~l-~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 118 (148)
T 3p2a_A 40 VINA-TAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRN 118 (148)
T ss_dssp CEEC-CTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceec-CHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEEC
Confidence 3443 446777777888999999999999999999999999999995 59999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|+++.++.|. +.++|.++|++++..
T Consensus 119 G~~~~~~~G~~~~~~l~~~l~~~l~~ 144 (148)
T 3p2a_A 119 GKMIDMLNGAVPKAPFDNWLDEQLSR 144 (148)
T ss_dssp TEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999 999999999987643
No 161
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=99.74 E-value=1.2e-17 Score=129.68 Aligned_cols=94 Identities=26% Similarity=0.453 Sum_probs=85.9
Q ss_pred hhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 417 EKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 417 ~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
+.|.. ....++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||++++++|+++.+
T Consensus 8 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (105)
T 1fb6_A 8 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKES 87 (105)
T ss_dssp TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEEE
Confidence 44555 445678999999999999999999999999999976 9999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhc
Q 009096 495 MINP-SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~ 510 (543)
+.|. +.+++.++|+++
T Consensus 88 ~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 88 IIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEECCCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHhh
Confidence 9998 999999999875
No 162
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=99.74 E-value=5.9e-18 Score=131.29 Aligned_cols=97 Identities=26% Similarity=0.421 Sum_probs=89.6
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEM 495 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 495 (543)
.+.+.+.+..++++++.||++||++|+.+.|.++++.++++++.|+.+|++.+++++++|+|.++||+++|++|+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 85 (104)
T 2e0q_A 6 SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEI 85 (104)
T ss_dssp TTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhhhc
Confidence 45666767778899999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhcCC
Q 009096 496 INP-SHQFLEDSANLAPS 512 (543)
Q Consensus 496 ~g~-~~~~~~~~~~~~~~ 512 (543)
.|. +.+++.++|++++.
T Consensus 86 ~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 86 IGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp ESCCCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 998 99999999987653
No 163
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=99.74 E-value=5.2e-18 Score=137.42 Aligned_cols=104 Identities=17% Similarity=0.304 Sum_probs=92.9
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+.+..+.+.+.+...+.. +++++|.||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||+++
T Consensus 20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 98 (133)
T 3cxg_A 20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEF 98 (133)
T ss_dssp EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEEEE
Confidence 345667777888887765 469999999999999999999999998887 79999999999999999999999999999
Q ss_pred EE--CCe--EEEEEcCCCHHHHHHHHHhcCC
Q 009096 486 YK--NGE--KLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~--~g~--~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
|+ ||+ ++.++.|.+.++|.++|++++.
T Consensus 99 ~~~~~g~g~~~~~~~G~~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 99 YFNLNNEWVLVHTVEGANQNDIEKAFQKYCL 129 (133)
T ss_dssp EEEETTEEEEEEEEESCCHHHHHHHHHHHSE
T ss_pred EEecCCCeEEEEEEcCCCHHHHHHHHHHHHH
Confidence 97 998 8899999999999999998764
No 164
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=99.74 E-value=1.2e-18 Score=142.51 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=89.4
Q ss_pred eEEeehhhhhhhcc-C-CCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAI-S-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+.+.+.|...+ . .+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||+++|
T Consensus 5 l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 84 (142)
T 1qgv_A 5 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF 84 (142)
T ss_dssp SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred HhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEE
Confidence 34455667777655 3 57899999999999999999999999999995 599999999999999999999999999999
Q ss_pred ECCeEEE---------EEcCC--CHHHHHHHHHhcCCCC
Q 009096 487 KNGEKLK---------EMINP--SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~~---------~~~g~--~~~~~~~~~~~~~~~~ 514 (543)
++|+++. ++.|. +.+++.++|++.+...
T Consensus 85 ~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 85 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 9999987 45565 4899999999876543
No 165
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=137.47 Aligned_cols=102 Identities=23% Similarity=0.293 Sum_probs=89.8
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-----CeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-----YVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-----~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+..++. +.|.+. ...++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++.++.++++|+|.++||+
T Consensus 9 v~~l~~-~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~ 87 (133)
T 1x5d_A 9 VIELTD-DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87 (133)
T ss_dssp CEECCT-THHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEE
T ss_pred CEEcCH-hhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeE
Confidence 444444 555554 4668899999999999999999999999998884 599999999999999999999999999
Q ss_pred EEEECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++|++|+.+.++.|. +.+++.++|++++.
T Consensus 88 ~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 88 KIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred EEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 999999999999998 99999999998754
No 166
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=99.73 E-value=1.5e-17 Score=130.29 Aligned_cols=98 Identities=18% Similarity=0.334 Sum_probs=89.1
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.+.+.+..++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++.++.++++|+|.++||+++|++|+++.+
T Consensus 8 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (109)
T 2yzu_A 8 DQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEV 87 (109)
T ss_dssp TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeee
Confidence 35555777778899999999999999999999999999998 49999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhcCCC
Q 009096 495 MINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~~~ 513 (543)
+.|. +.+++.++|++++..
T Consensus 88 ~~g~~~~~~l~~~l~~~l~~ 107 (109)
T 2yzu_A 88 LVGAQPKRNYQAKIEKHLPA 107 (109)
T ss_dssp EESCCCHHHHHHHHHTTC--
T ss_pred EeCCCCHHHHHHHHHHHhhh
Confidence 9999 999999999988753
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=7.7e-16 Score=142.79 Aligned_cols=202 Identities=13% Similarity=0.069 Sum_probs=176.0
Q ss_pred HHHhhhhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC----------hhHHHHHhhcCCCCCCCCChhHHH
Q 009096 163 RCAESRKIGDWK-TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ----------NEDADSCLSNMPKFEHYSPPSQVK 231 (543)
Q Consensus 163 ~~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~ 231 (543)
........|.+. +|+..+.+++..+|++ ..+|+.++.++..++. +++++.++..++..+|.+
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~-ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------ 107 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------ 107 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------
Confidence 333344566665 7999999999999998 7888889999988876 689999999999999999
Q ss_pred HHHHHHHHHHHHhhcC--hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccC
Q 009096 232 FLVWLLKLMFNISELR--FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR-YSEACSAYGEGLKYD 308 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~ 308 (543)
..+|..++.++...++ +++++.++.++++.+|.+..+|.. ++.+....|. ++++++++.++++.+
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~------------R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDY------------RRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 4567777889999884 899999999999999999999753 6888888888 699999999999999
Q ss_pred CCChhHHhHHHHHHHHc--------------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------cCHH
Q 009096 309 SYNSILYCNRAICWSKM--------------GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL-----------GRWS 363 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~ 363 (543)
|.+..+|.+++.++..+ +.++++++++.+++..+|++..+|+.+..++... +.++
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 99999999999999988 5699999999999999999999998666666555 5689
Q ss_pred HHHHHHHHHHhcCCCChHHH
Q 009096 364 EAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 364 ~A~~~~~~al~~~p~~~~~~ 383 (543)
++++++++++++.|++.-..
T Consensus 256 ~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 256 SELESCKELQELEPENKWCL 275 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhhCcccchHH
Confidence 99999999999999995443
No 168
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.73 E-value=2.3e-17 Score=134.47 Aligned_cols=93 Identities=16% Similarity=0.258 Sum_probs=83.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQ 501 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~ 501 (543)
.++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++| ++|+++ ++.|. +.+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~ 115 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPE-MAQGAMPKA 115 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCCE-EEESCCCHH
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcEE-EEeCCCCHH
Confidence 467999999999999999999999999999975 99999999999999999999999999999 799988 67787 999
Q ss_pred HHHHHHHhcCCCCCCCC
Q 009096 502 FLEDSANLAPSPVYKLP 518 (543)
Q Consensus 502 ~~~~~~~~~~~~~~~~~ 518 (543)
+|.++|++.......-+
T Consensus 116 ~l~~~l~~~~~~~~~~~ 132 (136)
T 2l5l_A 116 SFKKAIDEFLLKKEGHH 132 (136)
T ss_dssp HHHHHHHHHHTSCTTSS
T ss_pred HHHHHHHHHhhccCCCC
Confidence 99999999875544433
No 169
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=99.73 E-value=1.4e-17 Score=130.83 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=86.9
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|.+.+. ++++++.||++||++|+.+.|.++++++++ +++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 11 TENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp CTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred ChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 4466666666 789999999999999999999999999987 36999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhc
Q 009096 491 KLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~ 510 (543)
.+.++.|. +.++|.++|++.
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~ 110 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQ 110 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred EEEeccCCcCHHHHHHHHHhc
Confidence 99999998 999999999864
No 170
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=7.1e-17 Score=165.83 Aligned_cols=162 Identities=10% Similarity=-0.017 Sum_probs=122.1
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 284 (543)
.|++++|+..++++++.+|++.. .+..+|.++...|++++|+..|+++++.+|++..++ ..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------~~l 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV------AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV------------ARL 63 (568)
T ss_dssp -------------------CCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHH------------HHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------HHH
Confidence 36778888888888888888754 344448888888999999999999999999887765 347
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cC
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL---GR 361 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~ 361 (543)
|.++...|++++|++.|+++++.+|+++.++.++|.++..+|++++|++.|+++++++|++..++..+|.++..+ |+
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhcCCCChHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
+++|.+.|+++++.+|++.....
T Consensus 144 ~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HHHHHHHHHHHHHHTCCCSCHHH
T ss_pred HHHHHHHHHHHHhcCCcccChHH
Confidence 99999999999999888655443
No 171
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=99.73 E-value=1.3e-17 Score=134.27 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=85.1
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhC------CCeEEEEEeCcCcHHHHHHcCCCcccE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRY------PYVHFFKVDVEESLAIAKSEGVRTVPT 482 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~------~~~~~~~~d~~~~~~~~~~~~v~~~Pt 482 (543)
+..++ .+.|++.+ ..+++++|.||++||++|+.+.|.++++++.+ +++.|+.||++++++++++|+|.++||
T Consensus 17 v~~l~-~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 95 (127)
T 3h79_A 17 VVELT-DETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPT 95 (127)
T ss_dssp CEECC-TTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred eEECC-hhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCE
Confidence 44444 45566655 46899999999999999999999999998653 359999999999999999999999999
Q ss_pred EEEEECCeEE--EEEcCC-CHHHHHHHHHhc
Q 009096 483 FKIYKNGEKL--KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 483 ~~~~~~g~~~--~~~~g~-~~~~~~~~~~~~ 510 (543)
+++|++|+.. .++.|. +.++|.++|++.
T Consensus 96 ~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 96 MRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126 (127)
T ss_dssp EEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence 9999988664 467787 999999999864
No 172
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=132.79 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=88.2
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+..+ +.+.|.+.+.. .+++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|
T Consensus 8 ~v~~l-~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 84 (126)
T 1x5e_A 8 NVRVI-TDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHC 84 (126)
T ss_dssp SEEEC-CTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred ccEEe-cHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEE
Confidence 34445 44667776653 49999999999999999999999999886 599999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
++|+ +.++.|. +.++|.++|++.+...
T Consensus 85 ~~G~-~~~~~G~~~~~~l~~~l~~~~~~~ 112 (126)
T 1x5e_A 85 KDGE-FRRYQGPRTKKDFINFISDKEWKS 112 (126)
T ss_dssp ETTE-EEECCSCCCHHHHHHHHHTCGGGG
T ss_pred eCCe-EEEeecCCCHHHHHHHHHHHhhcc
Confidence 9999 5788898 9999999999886543
No 173
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.72 E-value=5.4e-17 Score=150.97 Aligned_cols=168 Identities=15% Similarity=0.025 Sum_probs=148.8
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|+. ...+..+|..+...|++++|+..|+++++.+|++...+ +.+|.++...|++++|+..+++++..+|+...
T Consensus 114 p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 114 PRE-EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIG------LLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp CCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHH------HHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred CCc-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHH------HHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 544 67788899999999999999999999999999996544 44499999999999999999999999996543
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC--
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-- 345 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 345 (543)
.. ...+..+...++.++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++
T Consensus 187 ~~------------~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 187 QG------------LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp HH------------HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred HH------------HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 32 2256678888899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 346 TKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 346 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
..++..++.++..+|+.++|...|++++.
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 88999999999999999999999999875
No 174
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.72 E-value=2.9e-17 Score=140.92 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=119.2
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
..+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3445666666666666666666666666666666666666666666666666666666666666666 554433333221
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
.. ..+....|+..++++++.+|++ +.+++.+|.++...|
T Consensus 84 ~~----------------------------------------~~~~~~~a~~~~~~al~~~P~~-~~~~~~la~~~~~~g 122 (176)
T 2r5s_A 84 LH----------------------------------------QQAAESPELKRLEQELAANPDN-FELACELAVQYNQVG 122 (176)
T ss_dssp HH----------------------------------------HHHTSCHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTT
T ss_pred HH----------------------------------------hhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc
Confidence 10 1112234678889999999987 788999999999999
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
++++|+..|+++++.+|+.... .++..+|.++...|+.++|+..|++++.
T Consensus 123 ~~~~A~~~~~~~l~~~p~~~~~----~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 123 RDEEALELLWNILKVNLGAQDG----EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHHHTTCTTTTTT----HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccChH----HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999976331 1233449999999999999999998864
No 175
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.9e-17 Score=134.04 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=89.1
Q ss_pred CeEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 409 EVEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 409 ~~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+..++. +.|.. +...++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++..++++|+|.++||+++|
T Consensus 18 ~v~~l~~-~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 96 (130)
T 2dml_A 18 DVIELTP-SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIF 96 (130)
T ss_dssp SSEECCT-TTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEE
T ss_pred CcEECCH-HHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEE
Confidence 3455554 55555 556788999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ECCeE-EEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEK-LKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~-~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|.. +.++.|. +.+++.++|.+.+
T Consensus 97 ~~~~~~~~~~~G~~~~~~l~~~l~~~l 123 (130)
T 2dml_A 97 GANKNKPEDYQGGRTGEAIVDAALSAL 123 (130)
T ss_dssp SSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred eCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence 87765 7888898 9999999998765
No 176
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.71 E-value=4.4e-17 Score=133.99 Aligned_cols=87 Identities=20% Similarity=0.348 Sum_probs=80.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQ 501 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~ 501 (543)
.+++++|.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++| ++|+++ ++.|. +.+
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~ 128 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQ-VNMGALSKE 128 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEECSSSCCE-EEESCCCHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCCCCEE-EEeCCCCHH
Confidence 478999999999999999999999999999985 99999999999999999999999999999 577776 78888 999
Q ss_pred HHHHHHHhcCC
Q 009096 502 FLEDSANLAPS 512 (543)
Q Consensus 502 ~~~~~~~~~~~ 512 (543)
+|.++|++++.
T Consensus 129 ~l~~~l~~~l~ 139 (141)
T 3hxs_A 129 QLKGYIDKVLL 139 (141)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHc
Confidence 99999998865
No 177
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.71 E-value=3.4e-17 Score=145.48 Aligned_cols=101 Identities=21% Similarity=0.376 Sum_probs=92.2
Q ss_pred hhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 415 SLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 415 ~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.+.|.+ ++..+++++|.||++||++|+.+.|.++++++++++ +.|+.||++.++.++++|+|.++||+++|++|+++
T Consensus 18 t~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 97 (222)
T 3dxb_A 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 97 (222)
T ss_dssp CTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeEE
Confidence 4455555 577889999999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
.++.|. +.+++.++|++.+....
T Consensus 98 ~~~~G~~~~~~l~~~l~~~l~~~~ 121 (222)
T 3dxb_A 98 ATKVGALSKGQLKEFLDANLAGSA 121 (222)
T ss_dssp EEEESCCCHHHHHHHHHHHSCCSC
T ss_pred EEeccccChHHHHHHHHhhccccc
Confidence 999999 99999999999886543
No 178
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-16 Score=127.66 Aligned_cols=114 Identities=25% Similarity=0.420 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRREL------PGDNEVAESLHNAQVA 392 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 392 (543)
+|++++|+..|+++++++ |+++.++..+..+...
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999888877654
No 179
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3.4e-17 Score=132.85 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=87.4
Q ss_pred CCeEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+..+ +.+.|.+.+.. +++++|+||++||++|+.+.|.+++++.+++++.|+.||+++.. ++|+|.++||++
T Consensus 10 g~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~Pt~~ 85 (135)
T 2dbc_A 10 GELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCLPTIF 85 (135)
T ss_dssp CSCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCCSEEE
T ss_pred CceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCCCEEE
Confidence 446667 56677766643 35899999999999999999999999999999999999999875 799999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhcC
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~~ 511 (543)
+|++|+++.++.|. +.++|+.+|+++-
T Consensus 86 ~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 86 VYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp EESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred EEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 99999999999997 5899999999863
No 180
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=99.71 E-value=1.1e-17 Score=133.87 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=89.0
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..++..+....++..++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|++
T Consensus 5 v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 84 (122)
T 3aps_A 5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQY 84 (122)
T ss_dssp SEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEE
T ss_pred hhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeC
Confidence 44555444435667778899999999999999999999999999997 59999999999999999999999999999987
Q ss_pred CeEEEEEcCC-----CHHHHHHHHHhcCCC
Q 009096 489 GEKLKEMINP-----SHQFLEDSANLAPSP 513 (543)
Q Consensus 489 g~~~~~~~g~-----~~~~~~~~~~~~~~~ 513 (543)
|..+.++.|. +.+++.++|++.+..
T Consensus 85 ~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 114 (122)
T 3aps_A 85 ERAKKSIWEEQINSRDAKTIAALIYGKLET 114 (122)
T ss_dssp EGGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred CCccceeeccccCcCCHHHHHHHHHHHHHh
Confidence 7667777763 999999999987644
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=9e-17 Score=144.63 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=171.3
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhH-------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNR-------AATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
....++..|..+ ..++++.|...|.+++..+|+.+++|..+ +.++...++..+++..+++++.+.|....++
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 345667777775 57888888888888888888888888888 7888888888888888888888888776665
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
+.+.-+| |+ +. .--.....+...++
T Consensus 85 ~~~~g~y---~~-----------~~-----------------------------------------~~v~~r~dl~LayA 109 (282)
T 4f3v_A 85 IAIGGLY---GD-----------IT-----------------------------------------YPVTSPLAITMGFA 109 (282)
T ss_dssp EECCTTT---CC-----------CE-----------------------------------------EECSSHHHHHHHHH
T ss_pred hccCCcc---cc-----------cc-----------------------------------------cccCCHhHHHHHHH
Confidence 5411111 00 00 00011134555667
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 279 (543)
.++...|++++|.+.|..++...|.+. ..+.+|.++...+++++|+..|+++....+..... .
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~----------~ 172 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSEHL-------VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG----------A 172 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCHHH-------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH----------H
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCchH-------HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH----------H
Confidence 888888888888888888887776542 34455888899999999999998776653221100 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYD--SY-NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
..+.+|.++..+|++++|+.+|++++.-. |. .+.+++++|.++.++|+.++|...|++++..+|+ ..++..|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 12448999999999999999999998654 55 5679999999999999999999999999999999 77665553
No 182
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=99.70 E-value=5.3e-17 Score=133.19 Aligned_cols=97 Identities=23% Similarity=0.400 Sum_probs=82.1
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.|...+..++.+++.||++||++|+.+.|.+++++.+++ ++.|+.+|++.++.++++|+|.++||+++|++|+++.+
T Consensus 40 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 119 (140)
T 1v98_A 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVAT 119 (140)
T ss_dssp ---------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEEE
Confidence 35555555444449999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhcCC
Q 009096 495 MINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~~ 512 (543)
+.|. +.+++.++|++++.
T Consensus 120 ~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 120 WVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp EESCCCHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHc
Confidence 9999 99999999998764
No 183
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=2.4e-18 Score=163.79 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=153.6
Q ss_pred hcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHH------------HccChhHHHHHhhcCCCCCCCCChhHHHH
Q 009096 169 KIGDWKTVLRETDA----AIAIGVDSSPQLVACKAEAHL------------KLHQNEDADSCLSNMPKFEHYSPPSQVKF 232 (543)
Q Consensus 169 ~~~~~~~A~~~~~~----~l~~~p~~~~~~~~~~a~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 232 (543)
..+.+++|+..+.. ++.+.|.. .+..+|.... .++++++|+..+++++...|.. .
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~------a 147 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ------S 147 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH------H
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH------H
Confidence 34577788888877 77777764 2333343322 4566677777777766555544 3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH----HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE----IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
..+..+|.++...|++++|+..|++++.+.|++.. ... .........+.++|.++...|++++|+..|+++++++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~-~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ-KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666699999999999999999999999999830 000 0000112234678999999999999999999999999
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHh
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA-VRDYEALRR 374 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 374 (543)
|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 456666654
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.70 E-value=2.1e-16 Score=133.56 Aligned_cols=124 Identities=28% Similarity=0.385 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------------CCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKY------------------DSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
.+..+..+|..++..|+|++|+..|.+++.. +|.+..++.++|.||..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445677999999999999999999999998 6777799999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhhhhhh
Q 009096 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN-EVAESLHNAQVALKKSRGEF 400 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~l~~~~~~~ 400 (543)
+.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++ .+...+..+...++......
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 77888888888776655443
No 185
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=99.70 E-value=2.1e-17 Score=131.93 Aligned_cols=100 Identities=23% Similarity=0.341 Sum_probs=90.2
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|.+.+..++++++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|++|+
T Consensus 13 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 92 (120)
T 1mek_A 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred chhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCC
Confidence 446667777778899999999999999999999999999884 4899999999999999999999999999999999
Q ss_pred EE--EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KL--KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~--~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+ .++.|. +.+++.++|+++++++
T Consensus 93 ~~~~~~~~g~~~~~~l~~~l~~~~~~~ 119 (120)
T 1mek_A 93 TASPKEYTAGREADDIVNWLKKRTGPA 119 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred cCCcccccCccCHHHHHHHHHhccCCC
Confidence 87 888898 9999999999987654
No 186
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=1.2e-17 Score=159.02 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=152.4
Q ss_pred HHccChhHHHHHhhc----CCCCCCCCChhHHHHHHHHHHHHHHH------------hhcChHHHHHHHHHHhhcCCCcH
Q 009096 203 LKLHQNEDADSCLSN----MPKFEHYSPPSQVKFLVWLLKLMFNI------------SELRFENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~al~~~p~~~ 266 (543)
...+.+++|+..+.. ++.+.|.... ...|.... .++++++|+..+++++..+|+..
T Consensus 76 ~~~~~~e~al~~~~~Ge~~~l~i~p~~ay--------g~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a 147 (336)
T 1p5q_A 76 DLPYGLERAIQRMEKGEHSIVYLKPSYAF--------GSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS 147 (336)
T ss_dssp TCCHHHHHHHTTCCTTCEEEEEECTTTTT--------TTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCeEEEEECCcccc--------CcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHH
Confidence 345678899999998 8888887521 11132222 56788889888888888777766
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------------hhHHhHHHHHHHHccCHHHH
Q 009096 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------------SILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A 331 (543)
..+ ..+|.+++..|+|++|+..|++++++.|++ ..++.++|.++..+|++++|
T Consensus 148 ~~~------------~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 148 TIV------------KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp HHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHH------------HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 654 458999999999999999999999999998 59999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhh
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~ 399 (543)
+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+..+...+++....
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888766543
No 187
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=99.70 E-value=1.7e-17 Score=131.70 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=79.4
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEe----CcCcHHHHHHcCCCcccEEEEEECC
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVD----VEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d----~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+.+.+...+..++++++.||++||++|+.+.|.+++++++++. +.++.++ ++..+.++++|||.++||+++|++|
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G 97 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG 97 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETT
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECC
Confidence 4566777777788999999999999999999999999988753 5444222 2234579999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHHh
Q 009096 490 EKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 490 ~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+++.++.|. +.++|.++|++
T Consensus 98 ~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 98 QINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp EEEEECCTTCCHHHHHHHHTC
T ss_pred EEEEEecCCCCHHHHHHHhhC
Confidence 999999998 99999999864
No 188
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=3.5e-16 Score=125.82 Aligned_cols=109 Identities=18% Similarity=0.313 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT-------KALL 350 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 350 (543)
+..+.++|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344577999999999999999999999999999999999999999999999999999999999988763 5889
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
++|.++..+|++++|+++|+++++..|+ +++...+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 9999999999999999999999999885 55554443
No 189
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=99.69 E-value=3.2e-18 Score=138.74 Aligned_cols=108 Identities=22% Similarity=0.387 Sum_probs=96.3
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.++++..+++++.|+.+|+++++.++++|+|.++||+
T Consensus 14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 93 (130)
T 1wmj_A 14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTF 93 (130)
T ss_dssp SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSCCC
T ss_pred cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccceE
Confidence 34556666677777664 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCCCCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPSPVY 515 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 515 (543)
+++++|+++.++.|.+.+++.++|++++....
T Consensus 94 ~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~~~ 125 (130)
T 1wmj_A 94 LFIKDGAEADKVVGARKDDLQNTIVKHVGATA 125 (130)
T ss_dssp CBCTTTTCCBCCCTTCTTTHHHHHHHHTSSSC
T ss_pred EEEeCCeEEEEEeCCCHHHHHHHHHHHHhccC
Confidence 99999999999999988999999999886543
No 190
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=99.69 E-value=7e-17 Score=141.44 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=91.7
Q ss_pred CCCeEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 407 SGEVEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+.+..+.+...|.+.+.. +++++|.||++||++|+.+.|.+.+++.+|+++.|++||++ ++.++.+|+|.++||+
T Consensus 98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~PTl 176 (217)
T 2trc_P 98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVLPTL 176 (217)
T ss_dssp CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGCSEE
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCCCEE
Confidence 3557777677777777643 37999999999999999999999999999999999999999 8889999999999999
Q ss_pred EEEECCeEEEEEcCC-CH-------HHHHHHHHhc
Q 009096 484 KIYKNGEKLKEMINP-SH-------QFLEDSANLA 510 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~-~~-------~~~~~~~~~~ 510 (543)
++|++|+++.+++|. +. ++|+.+|.++
T Consensus 177 ~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred EEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 999999999999998 54 8999999875
No 191
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.69 E-value=1.8e-17 Score=126.96 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=71.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC---CCeEEEEEeCcCc--HHHHHHcCCCcccEEEEEECCeEEEEEcCC-
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY---PYVHFFKVDVEES--LAIAKSEGVRTVPTFKIYKNGEKLKEMINP- 498 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~~~--~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 498 (543)
+.+.++|+||++||++|+.+.|.+....... ..+.+.++|++++ +.++.+++|.++||+++|+||+++.|++|+
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~ 96 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP 96 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence 3478999999999999999987543322111 1267889999876 579999999999999999999999999999
Q ss_pred CHHHHHHHHHhcC
Q 009096 499 SHQFLEDSANLAP 511 (543)
Q Consensus 499 ~~~~~~~~~~~~~ 511 (543)
++++|..+|++.+
T Consensus 97 ~~~~f~~~L~~~l 109 (116)
T 3dml_A 97 GEDFFWPMLARLI 109 (116)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998764
No 192
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.68 E-value=9.7e-17 Score=141.39 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=90.9
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+...+...+..+++++|.||++||++|+.+.|.++++++++++ +.|+.||+++++.++++|+|.++||+++|++|+++.
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 182 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV 182 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCCE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCcee
Confidence 4466667677789999999999999999999999999999976 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcCCC
Q 009096 494 EMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~~~ 513 (543)
++.|. +.++|.++|++.+.+
T Consensus 183 ~~~G~~~~~~l~~~i~~~l~~ 203 (210)
T 3apq_A 183 KYNGDRSKESLVAFAMQHVRS 203 (210)
T ss_dssp ECCSCCCHHHHHHHHHHHHHC
T ss_pred EecCCCCHHHHHHHHHHhCcc
Confidence 99998 999999999987644
No 193
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=5.3e-16 Score=159.31 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=135.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 170 IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
.|++++|+..++++++.+|++ ..++..+|.++...|++++|+..|+++++.+|++... +..+|.++...|+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA------VARLGRVRWTQQRHA 74 (568)
T ss_dssp -------------------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH------HHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHCCCHH
Confidence 478999999999999999987 7889999999999999999999999999999998554 455599999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc---c
Q 009096 250 NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM---G 326 (543)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g 326 (543)
+|+..|+++++.+|++..++ ..+|.++...|++++|++.|+++++.+|++..++.++|.++..+ |
T Consensus 75 ~A~~~~~~al~~~p~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIA------------LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHhcCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999999998775 34799999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 327 LWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 327 ~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
++++|+..|+++++.+|++...+..++
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999999999999999988887766
No 194
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.68 E-value=8.7e-16 Score=129.98 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|.++...|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|.++..+|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhh
Q 009096 361 RWSEAVRDYEALRRELPGDNE--VAESLHNAQVALKKSR 397 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~l~~~~ 397 (543)
++++|+.+|+++++++|+++. +...+..+...+++..
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 4555555555555443
No 195
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=99.68 E-value=1.1e-16 Score=141.61 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=90.9
Q ss_pred CCCeEEeehhhhhhhccC---CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 407 SGEVEEISSLEKFKAAIS---SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~---~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+.+..+.+...|...+. .+++++|.||++||++|+.+.|.|.+++.+|+++.|++||++. ..++.+|+|.++||+
T Consensus 111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~PTl 189 (245)
T 1a0r_P 111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVLPTL 189 (245)
T ss_dssp CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTCSEE
T ss_pred CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCCCEE
Confidence 356777767777877773 3779999999999999999999999999999999999999987 678999999999999
Q ss_pred EEEECCeEEEEEcCC--------CHHHHHHHHHhcC
Q 009096 484 KIYKNGEKLKEMINP--------SHQFLEDSANLAP 511 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~--------~~~~~~~~~~~~~ 511 (543)
++|++|+++.+++|+ +.+.|+.+|.++-
T Consensus 190 l~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 190 LVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp EEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred EEEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 999999999999986 2467999998863
No 196
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=3.2e-15 Score=121.50 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
+++.+|.++...|++++|+..+++++...|++...+ ..+|.++...|++++|+..+++++...|.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW------------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHH------------HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 355669999999999999999999999999987764 34799999999999999999999999999999
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|...++++++.+|++
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 197
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=99.68 E-value=1.1e-16 Score=133.13 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=85.7
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeC-------CCCccccchhHhHHHHHhhCC------CeEEEEEeCcCcHHHH
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKE-------ASSEKCEEISPFVNLLCVRYP------YVHFFKVDVEESLAIA 472 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~-------~~c~~c~~~~p~l~~l~~~~~------~~~~~~~d~~~~~~~~ 472 (543)
..+..++ ...|++.+.. +.+++|+||+ .||++|+++.|.++++++++. .+.|++||+|++++++
T Consensus 18 ~~vi~lt-~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la 96 (178)
T 3ga4_A 18 TGVITVT-ADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV 96 (178)
T ss_dssp TSEEECC-TTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred CCCEECC-HHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence 3455554 4566676643 5579999999 499999999999999999874 4999999999999999
Q ss_pred HHcCCCcccEEEEEECCeEE------------EEE----c-CCCHHHHHHHHHhcCCCC
Q 009096 473 KSEGVRTVPTFKIYKNGEKL------------KEM----I-NPSHQFLEDSANLAPSPV 514 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~~~g~~~------------~~~----~-g~~~~~~~~~~~~~~~~~ 514 (543)
++|||+++||+++|++|... .++ . |.+.+.|.+||.+.+...
T Consensus 97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~ 155 (178)
T 3ga4_A 97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNIS 155 (178)
T ss_dssp HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCC
T ss_pred HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCC
Confidence 99999999999999988532 233 2 459999999999876643
No 198
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.67 E-value=1.6e-15 Score=140.97 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=148.5
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..++.+|..+...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..+++++..+|+... ....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~------~~~~ 190 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY------QGLV 190 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH------HHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH------HHHH
Confidence 457788999999999999999999999999988 788999999999999999999999999999995422 2333
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--hhHH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN--SILY 315 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~ 315 (543)
.+..+...++.++|+..|++++..+|++..++ +.+|.++...|++++|+..|+++++.+|++ ..++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~------------~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALA------------TQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHH------------HHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 36678888999999999999999999999986 347999999999999999999999999998 8899
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+++.++..+|+.++|...|++++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999875
No 199
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.67 E-value=6.6e-16 Score=132.59 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=121.5
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAIC 321 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 321 (543)
+...|++++|+..+++++..+|++..++ ..+|.++...|++++|+.+|+++++.+|+++.++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQW------------ALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567899999999999999999998875 3479999999999999999999999999999999999999
Q ss_pred -HHHccCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 322 -WSKMGLW--ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 322 -~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.....+..+
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 8899999 9999999999999999999999999999999999999999999999999998766554433
No 200
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.67 E-value=2.2e-15 Score=134.80 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+..++.+|..+...|++++|+..|+++++..|.++.. ..+++.+|.++...|++++|+..|+++++.+|++..+..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS---QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 47889999999999999999999999999999988653 346777899999999999999999999999999986533
Q ss_pred HHHhHHHHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHhccCCCChhHH-----------------
Q 009096 271 VLTNVKMVVRARTRGNNLFS------------------SRRYSEACSAYGEGLKYDSYNSILY----------------- 315 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~----------------- 315 (543)
.+ +.+|.++.. .|++++|+..|+++++.+|++..++
T Consensus 80 a~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 80 VM---------YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp HH---------HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HH---------HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 32 347888875 5799999999999999999987655
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..+|.+|...|++++|+..|+++++..|+++ ++++.+|.++.++|++++|++.++++....|++.+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 5789999999999999999999999999986 78999999999999999999999999999998753
No 201
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.67 E-value=5.3e-17 Score=131.87 Aligned_cols=102 Identities=11% Similarity=0.204 Sum_probs=87.4
Q ss_pred EeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhH---HHHHhhCCCeEEEEEeC----cCcHHHHHHcCCCcccE
Q 009096 412 EISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPYVHFFKVDV----EESLAIAKSEGVRTVPT 482 (543)
Q Consensus 412 ~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~~~~~~~d~----~~~~~~~~~~~v~~~Pt 482 (543)
.+.+.+.+...+.. ++++++.||++||++|+.+.|.+ .++.+.++++.|+.+|+ +....++++|+|.++||
T Consensus 15 ~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt 94 (134)
T 2fwh_A 15 QIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 94 (134)
T ss_dssp ECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred EecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCE
Confidence 35555666665543 78999999999999999999998 99999999999999999 56788999999999999
Q ss_pred EEEE-ECCeEE--EEEcCC-CHHHHHHHHHhcCCC
Q 009096 483 FKIY-KNGEKL--KEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 483 ~~~~-~~g~~~--~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
+++| ++|+++ .++.|. +.++|.++|++....
T Consensus 95 ~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~~ 129 (134)
T 2fwh_A 95 ILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129 (134)
T ss_dssp EEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC---
T ss_pred EEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCcc
Confidence 9999 799998 789998 999999999987543
No 202
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.67 E-value=5.3e-16 Score=128.47 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=106.3
Q ss_pred CCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009096 35 NNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114 (543)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (543)
..+++++..+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++.+++.+|.++..+|++++|+..|+++++
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999987
No 203
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=8.6e-16 Score=142.25 Aligned_cols=194 Identities=16% Similarity=0.172 Sum_probs=142.5
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
|.++..++.+|..++..|++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS----SPQLVACKAE 200 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~a~ 200 (543)
++..+|++++|+..|+++++ .+|++ ...++. ..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~-----------------------------------------l~p~~~~~~~~~~~~--~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS-----------------------------------------LAKEQRLNFGDDIPS--AL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----------------------------------------HHHHTTCCCCSHHHH--HH
T ss_pred HHHHcCCHHHHHHHHHHHHH-----------------------------------------hCccchhhHHHHHHH--HH
Confidence 99999999999988866543 22211 011111 11
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
.......+... .....+.+......+ +.+ ..|++++|++.++++++.+|++......
T Consensus 118 ~~~~~~~~~~~------~~~~~~~~~~i~~~l------~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~--------- 174 (281)
T 2c2l_A 118 RIAKKKRWNSI------EERRIHQESELHSYL------TRL--IAAERERELEECQRNHEGHEDDGHIRAQ--------- 174 (281)
T ss_dssp HHHHHHHHHHH------HHTCCCCCCHHHHHH------HHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHH---------
T ss_pred HHHHHHHHHHH------HHHHHhhhHHHHHHH------HHH--HHHHHHHHHHHHHhhhccccchhhhhhH---------
Confidence 11111111111 112344444433333 332 3688899999999999999987755432
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHhcc
Q 009096 281 ARTRGNNLFSS-RRYSEACSAYGEGLKY 307 (543)
Q Consensus 281 ~~~~g~~~~~~-~~~~~A~~~~~~al~~ 307 (543)
++..+... +.+++|.+.|.++.+.
T Consensus 175 ---l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 175 ---QACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23334443 6788888888888764
No 204
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=1.1e-14 Score=149.45 Aligned_cols=341 Identities=8% Similarity=-0.042 Sum_probs=230.9
Q ss_pred CCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC---HHHHHHHHHHHHh
Q 009096 34 NNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR---LTEAVSDCEEAVR 110 (543)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~ 110 (543)
+..++..+..+|.+...|..++......+.++.|...|++++...|.....|...+..-...++ ++.+...|++++.
T Consensus 52 i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 3345677889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCC--CChhHHHHHHHHHHHhCCH----HH----HHHHhcCCCC--CC----ChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 111 LDP--GYNRAHQRLASLYFRLGQV----EN----ARHHLCFPGH--HP----DPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 111 ~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~a~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
..| .++..|..........++. ++ ....|++++. .. ....|...................++.+
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 984 5777888877766665543 23 3366776654 11 1222221111100000000001123345
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHH-------------HHHccChhH------------------------------
Q 009096 175 TVLRETDAAIAIGVDSS-PQLVACKAEA-------------HLKLHQNED------------------------------ 210 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~-~~~~~~~a~~-------------~~~~~~~~~------------------------------ 210 (543)
.+...|.+++.. |... ..+|...... -....+|+.
T Consensus 212 ~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 212 YIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 555666666643 3211 1111100000 000011222
Q ss_pred -------------------------------------HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHH-
Q 009096 211 -------------------------------------ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAV- 252 (543)
Q Consensus 211 -------------------------------------A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~- 252 (543)
....|++++...|..+.. |+..+..+...|+.++|.
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~l------W~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEI------WFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHH------HHHHHHHHHHHSCCTTHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHhcCcHHHHHH
Confidence 223344444444444333 333377777778888886
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----------CCC-----------
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-----------DSY----------- 310 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------~p~----------- 310 (543)
..|++++...|.+...+. ..+......|++++|.+.|++++.. .|.
T Consensus 365 ~il~rAi~~~P~s~~Lwl------------~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAF------------SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 888888888888776653 3577788889999999999999975 243
Q ss_pred ChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 311 NSILYCNRAICWSKMGLWENSIEDCNVALRI-QPNYTKALLRRAVSNEKLGR-WSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
...+|...+.+..+.|+.+.|...|.+|++. .+.....|...|.+....++ ++.|...|+++++..|+++.++..+..
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3457888999999999999999999999988 44557888888888877754 899999999999999999999866665
Q ss_pred HHHHH
Q 009096 389 AQVAL 393 (543)
Q Consensus 389 ~~~~l 393 (543)
.....
T Consensus 513 fe~~~ 517 (679)
T 4e6h_A 513 FLIYV 517 (679)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 44443
No 205
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=1e-15 Score=126.00 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=104.0
Q ss_pred CCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009096 35 NNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114 (543)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (543)
..+.+++..+|.+++.++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++.+++.+|.++..+|++++|+..|++++.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999886
No 206
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-17 Score=133.44 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=83.7
Q ss_pred eEEeehhhhhhhccCCC--CceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCC------c
Q 009096 410 VEEISSLEKFKAAISSP--GVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVR------T 479 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~--~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~------~ 479 (543)
+..++ .+.|.+.+... .++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|. +
T Consensus 9 v~~l~-~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~ 87 (137)
T 2dj0_A 9 IKYFN-DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQ 87 (137)
T ss_dssp CEECC-TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSC
T ss_pred EEEcc-HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCC
Confidence 33443 45666666443 389999999999999999999999999995 5999999999999999999999 9
Q ss_pred ccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 480 VPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 480 ~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+||+++|++|+++.++.|. +.+++.++|++
T Consensus 88 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 118 (137)
T 2dj0_A 88 LPTLILFQGGKEAMRRPQIDKKGRAVSWTFS 118 (137)
T ss_dssp SSEEEEESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred CCEEEEEECCEEEEEecCcCchHHHHHHHhc
Confidence 9999999999999999997 77766666543
No 207
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.2e-16 Score=129.86 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=87.1
Q ss_pred eEEeehhhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..++ .+.|...+. .+++++|.||++||++|+.+.|.|++++++++ ++.|+.+|++++..++++|+|.++||+++
T Consensus 9 v~~l~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 87 (133)
T 2dj3_A 9 VKVVV-GKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYF 87 (133)
T ss_dssp SEECC-TTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEE
T ss_pred eEEEc-CCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEE
Confidence 44444 355666654 47899999999999999999999999999885 59999999999999999999999999999
Q ss_pred EECCeEEE--EEc-CC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLK--EMI-NP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~--~~~-g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|..+. ++. |. +.++|.++|++++...
T Consensus 88 ~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 88 APSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp ECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred EeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence 99886543 455 65 9999999999987554
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=3.2e-16 Score=158.68 Aligned_cols=134 Identities=8% Similarity=-0.105 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR--RYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
++++++.++++++.+|++..+|. .++.++...+ ++++|++++.++++.+|.+..+|.+++.+...+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~------------hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l 156 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWH------------HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 56666666666666666666653 2566666666 556666666666666666666666666666666
Q ss_pred c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 326 G-LWENSIEDCNVALRIQPNYTKALLRRAVSNEKL--------------GRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 326 g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
| .++++++++.++++.+|.+..+|..++.++..+ +.+++|++++.+|+.++|++..+|..+..+.
T Consensus 157 ~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 6 666666666666666666666666666666653 4556666666666666666666666655554
Q ss_pred HHH
Q 009096 391 VAL 393 (543)
Q Consensus 391 ~~l 393 (543)
...
T Consensus 237 ~~~ 239 (567)
T 1dce_A 237 GRA 239 (567)
T ss_dssp SCC
T ss_pred hcC
Confidence 443
No 209
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.65 E-value=7.5e-15 Score=129.81 Aligned_cols=185 Identities=9% Similarity=-0.080 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc----ChHH
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL----RFEN 250 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g----~~~~ 250 (543)
+|+..|+++.+.+ .+.+++.+|.+|...+++++|+.+|+++.+. .++. +++.+|.++.. + ++++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~------a~~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGD------ALALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHH------HHHHHHHHTTS-STTSCCHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHH------HHHHHHHHHHc-CCCCCCHHH
Confidence 4677888888762 3788999999999999999999999999765 3433 45555989888 7 8999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCC--CChhHHhHHHHHHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGLKYDS--YNSILYCNRAICWSK 324 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 324 (543)
|+.+|+++.+ +.++.+. .++|.++.. .+++++|+.+|+++++..| .++.++++||.+|..
T Consensus 72 A~~~~~~A~~--~g~~~a~------------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 72 ARQLAEKAVE--AGSKSGE------------IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHHHH--TTCHHHH------------HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHH------------HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 9999999965 4566554 457999988 8999999999999999988 459999999999999
Q ss_pred ----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-c-----CHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 325 ----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL-G-----RWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 325 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
.+++++|+.+|+++++. |.++.+++++|.+|..- | ++++|+.+|+++.+.. ++.+...+..
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 89999999999999998 77888999999999864 3 8999999999999985 4555544543
No 210
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.65 E-value=1.4e-15 Score=121.14 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChH
Q 009096 362 WSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~ 381 (543)
+++|+..|+++++++|++..
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999998764
No 211
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.64 E-value=1.1e-15 Score=133.94 Aligned_cols=150 Identities=20% Similarity=0.185 Sum_probs=118.1
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh------
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS------ 312 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------ 312 (543)
+......|++++|.+.+.......+.. +..+..+|..++..|+|++|+..|+++++..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQS------------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 78 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence 334555666666666555433322222 22345689999999999999999999999988887
Q ss_pred ----------hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 313 ----------ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 313 ----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.++.++|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 009096 383 AESLHNAQVALKKSRGEF 400 (543)
Q Consensus 383 ~~~l~~~~~~l~~~~~~~ 400 (543)
+..+..+...+++..+..
T Consensus 159 ~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988887665544
No 212
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.64 E-value=7.8e-16 Score=123.78 Aligned_cols=107 Identities=26% Similarity=0.362 Sum_probs=98.2
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------h
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN-------R 117 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~ 117 (543)
++.+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999988763 5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL 151 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~ 151 (543)
++.++|.++..+|++++|+..|++++. .+++...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 788999999999999999999999987 6666543
No 213
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=99.64 E-value=4.3e-16 Score=115.55 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=74.4
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLE 504 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 504 (543)
.+.++.||++||++|+.+.|.+++++++++ ++.|..+|++++++++++|||.++||+++ ||++ ++.|. +.+++.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~ 78 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV 78 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence 467899999999999999999999999998 59999999999999999999999999998 9987 78898 999999
Q ss_pred HHHHhc
Q 009096 505 DSANLA 510 (543)
Q Consensus 505 ~~~~~~ 510 (543)
++|++.
T Consensus 79 ~~l~~~ 84 (85)
T 1fo5_A 79 EAIKKR 84 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 214
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=99.63 E-value=4.2e-16 Score=115.63 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=74.2
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
..++.||++||++|+.+.|.+++++++++ ++.|..+|++++++++++|||.++||+++ ||++ ++.|. +.+++.+
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 78 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE 78 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence 46889999999999999999999999998 59999999999999999999999999998 9987 78898 9999999
Q ss_pred HHHhcC
Q 009096 506 SANLAP 511 (543)
Q Consensus 506 ~~~~~~ 511 (543)
+|++.+
T Consensus 79 ~l~~~l 84 (85)
T 1nho_A 79 AINDEM 84 (85)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998764
No 215
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.63 E-value=7.9e-15 Score=133.73 Aligned_cols=190 Identities=11% Similarity=-0.063 Sum_probs=149.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
|+..+++.+...+.. ...+..+|.++...|++++|++.+.+.+..+|... .+......+.++..+|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~----~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG----TTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT----HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC----cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455556555554333 45567889999999999999999999988877211 1344455599999999999999999
Q ss_pred HHHhhcCCC-----cHHHHHHHHhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHcc
Q 009096 256 EKAGLLDYS-----NVEIASVLTNVKMVVRARTRGNNLFSSR--RYSEACSAYGEGLKYDSY--NSILYCNRAICWSKMG 326 (543)
Q Consensus 256 ~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 326 (543)
+++.+.+|+ +..... + ..|++....| ++.+|...|+++.+..|+ ....+++ ++.++|
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~-L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g 225 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILN-L----------AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR 225 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHH-H----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT
T ss_pred HHHHhcCccccccchHHHHH-H----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC
Confidence 999999983 332221 1 1354455555 999999999999988887 3444444 899999
Q ss_pred CHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 327 LWENSIEDCNVALRI----------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 327 ~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
++++|...++.+++. +|++++++.+++.+...+|+ +|.++++++.+.+|+++-+....
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999988876 58899999999999999998 99999999999999999887544
No 216
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=1.4e-14 Score=128.36 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
.++.+|..+...|++++|+..|++++ +| ++.++ ..+|.++...|++++|+..|+++++.+|+++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRIC------------FNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 45566999999999999999999986 33 33332 45899999999999999999999999999999
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYT----------------KALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
+++++|.++..+|++++|+..|+++++..|++. .+++++|.++..+|++++|+.+|+++++++|
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999888876 9999999999999999999999999999999
Q ss_pred CChH
Q 009096 378 GDNE 381 (543)
Q Consensus 378 ~~~~ 381 (543)
++..
T Consensus 153 ~~~~ 156 (213)
T 1hh8_A 153 EPRH 156 (213)
T ss_dssp SGGG
T ss_pred cccc
Confidence 8754
No 217
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.63 E-value=2.7e-16 Score=127.77 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=80.7
Q ss_pred CCCCceeeeeeCCCCccccchhHhHH--HHHhhC-CCeEEEEEeC---cCcHHHHHHcCC---CcccEEEEE-ECCeEEE
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVN--LLCVRY-PYVHFFKVDV---EESLAIAKSEGV---RTVPTFKIY-KNGEKLK 493 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~--~l~~~~-~~~~~~~~d~---~~~~~~~~~~~v---~~~Pt~~~~-~~g~~~~ 493 (543)
..+++++|+||++||++|+.+.|.|+ ++...+ +++.|+.||+ +.+.+++++|+| .++||+++| ++|+++.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~ 106 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY 106 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEE
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEE
Confidence 45889999999999999999999999 999888 4599999999 999999999999 999999999 7999999
Q ss_pred EEcC-------C-CHHHHHHHHHhc
Q 009096 494 EMIN-------P-SHQFLEDSANLA 510 (543)
Q Consensus 494 ~~~g-------~-~~~~~~~~~~~~ 510 (543)
+..| . +.+++.++|+++
T Consensus 107 ~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 107 TTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp ECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EecCCcccccccCCHHHHHHHHHHh
Confidence 9999 5 899999999875
No 218
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=99.43 E-value=2.6e-17 Score=133.28 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=90.0
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCCcccEEEEE--EC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVRTVPTFKIY--KN 488 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~--~~ 488 (543)
+.+......+++++|.||++||++|+.+.|.+ +++.+.+++ +.|+.+|++ +...++++|+|.++||+++| ++
T Consensus 10 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~ 89 (130)
T 2lst_A 10 EALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKA 89 (130)
Confidence 33444555678999999999999999999999 899888876 999999994 66889999999999999999 68
Q ss_pred CeE--EEEEcCC-CHHHHHHHHHhcCCCCCCCCcccc
Q 009096 489 GEK--LKEMINP-SHQFLEDSANLAPSPVYKLPLVTL 522 (543)
Q Consensus 489 g~~--~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 522 (543)
|++ +.++.|. +.+++.++|++++......+.+++
T Consensus 90 G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~ 126 (130)
T 2lst_A 90 GAWEEVGRLFGSRPRAEFLKELRQVCVKGGACGEGHH 126 (130)
Confidence 999 8999998 999999999998876655554433
No 219
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=99.62 E-value=5.5e-16 Score=123.63 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=86.9
Q ss_pred eEEeehhhhhhhccCC--CCceeeeeeCC-------CCccccchhHhHHHHHhhCC-CeEEEEEeC-------cCcHHHH
Q 009096 410 VEEISSLEKFKAAISS--PGVSLVHFKEA-------SSEKCEEISPFVNLLCVRYP-YVHFFKVDV-------EESLAIA 472 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~--~~~~lv~f~~~-------~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~-------~~~~~~~ 472 (543)
...+.+.+.+...+.. ++++++.||++ ||++|+.+.|.+++++++++ ++.|+.+|+ +.+..++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~ 85 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence 3455677788777754 78999999999 99999999999999999996 599999999 7888999
Q ss_pred HHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHHHHh
Q 009096 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
++|+|.++||+++|++|..+....|.++++|+++|++
T Consensus 86 ~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~ 122 (123)
T 1wou_A 86 KNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 122 (123)
T ss_dssp HHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred HHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence 9999999999999998776665666688999999875
No 220
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.62 E-value=8.9e-15 Score=119.51 Aligned_cols=115 Identities=25% Similarity=0.446 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
..+|..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 92 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHhh
Q 009096 362 WSEAVRDYEALRRELPG-----DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~l~~~ 396 (543)
+++|+..|+++++++|+ +..+...+..+.......
T Consensus 93 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 93 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 888888888776665443
No 221
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=2.3e-14 Score=121.27 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009096 230 VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309 (543)
Q Consensus 230 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 309 (543)
.....+..+|.++...|++++|+..|++++..+|++..++ ..+|.++...|++++|+..|+++++.+|
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY------------GNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3445677779999999999999999999999999987765 3479999999999999999999999999
Q ss_pred CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHhc
Q 009096 310 YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV--SNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 310 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 375 (543)
.++.+++.+|.++..+|++++|+..|++++.++|++..++..++. .+...|++++|+..+.++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999999988855444 488889999999998876554
No 222
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=99.62 E-value=5.7e-16 Score=123.59 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=83.9
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCC------CeEEEEEeCcCcHHHHHHcCCCcccE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP------YVHFFKVDVEESLAIAKSEGVRTVPT 482 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~------~~~~~~~d~~~~~~~~~~~~v~~~Pt 482 (543)
+..++ .+.|...+ ..+++++|.||++||++|+.+.|.+++++++++ ++.|+.+|+++++ +++ +|.++||
T Consensus 9 v~~l~-~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt 84 (121)
T 2djj_A 9 VTVVV-AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPT 84 (121)
T ss_dssp SEECC-TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSE
T ss_pred eEEec-ccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCe
Confidence 44444 45666664 678899999999999999999999999999886 4999999999876 555 9999999
Q ss_pred EEEEECCeE--EEEEcCC-CHHHHHHHHHhcCC
Q 009096 483 FKIYKNGEK--LKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 483 ~~~~~~g~~--~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+++|++|.. +.++.|. +.++|.++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (121)
T 2djj_A 85 IKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117 (121)
T ss_dssp EEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred EEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence 999998754 7788898 99999999998865
No 223
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=7.6e-15 Score=137.10 Aligned_cols=172 Identities=14% Similarity=0.091 Sum_probs=137.6
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
.+..+...|++++|+..+++++...+..+........+..+|.++...+++++|+..|++++...+....... .
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~------~ 154 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ------N 154 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH------H
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH------H
Confidence 4677888899999999999988877766554333333444688999999999999999999986554333211 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKY-------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY----- 345 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 345 (543)
+..+..+|.++...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.++++++++.+..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 122456899999999999999999999953 22335689999999999999999999999999886443
Q ss_pred -HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc
Q 009096 346 -TKALLRRAVSNEKLG-RWSEAVRDYEALRRE 375 (543)
Q Consensus 346 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 375 (543)
..+++++|.++..+| ++++|+.+|++|+.+
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 789999999999999 579999999999876
No 224
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=2.8e-14 Score=126.07 Aligned_cols=186 Identities=15% Similarity=0.031 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC----CHHHHHHHhc
Q 009096 65 VEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG----QVENARHHLC 140 (543)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 140 (543)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+..|+++++. .++.+++.+|.+|.. + ++++|+.+|
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~- 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLA- 76 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHH-
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH-
Confidence 3577888888876 67889999999999999999999999998874 578888888888776 4 555555544
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 141 FPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
+++.+. .+ +.+++.+
T Consensus 77 ----------------------------------------~~A~~~--g~-~~a~~~L---------------------- 91 (212)
T 3rjv_A 77 ----------------------------------------EKAVEA--GS-KSGEIVL---------------------- 91 (212)
T ss_dssp ----------------------------------------HHHHHT--TC-HHHHHHH----------------------
T ss_pred ----------------------------------------HHHHHC--CC-HHHHHHH----------------------
Confidence 444332 11 3333443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHHHHHHHHHHh----
Q 009096 221 FEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRARTRGNNLFS---- 290 (543)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~g~~~~~---- 290 (543)
|.++.. .+++++|+.+|+++.+..|. ++.++ ..+|.+|..
T Consensus 92 ------------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~------------~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 92 ------------------ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ------------MLLGLIYASGVHG 141 (212)
T ss_dssp ------------------HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH------------HHHHHHHHHTSSS
T ss_pred ------------------HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH------------HHHHHHHHcCCCC
Confidence 444444 56777777778887777763 24442 457889988
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-c-----CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-G-----LWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
.+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++++.. +..+...++.
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 88999999999999988 67788999999999864 3 8999999999999874 4555555554
No 225
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=8.7e-15 Score=136.71 Aligned_cols=176 Identities=13% Similarity=0.048 Sum_probs=138.1
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
+...+..+...|++++|+..+.++++..+............+..|.++...|++++|+..+++++...+.....+.
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---- 153 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ---- 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH----
Confidence 3445677777888888888887777766665444344444556688999999999999999999977654422110
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh---ccCCCCh----hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC---
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGL---KYDSYNS----ILYCNRAICWSKMGLWENSIEDCNVALRIQPN--- 344 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 344 (543)
.+..+..+|.++...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+.++++++.+.++
T Consensus 154 --~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 --NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 11224568999999999999999999999 4455532 68999999999999999999999999987543
Q ss_pred ---CHHHHHHHHHHHHHccCHHHH-HHHHHHHHhcC
Q 009096 345 ---YTKALLRRAVSNEKLGRWSEA-VRDYEALRREL 376 (543)
Q Consensus 345 ---~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 376 (543)
...+++++|.++..+|++++| ..+|++|+.+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 268899999999999999999 88899998764
No 226
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=2.3e-13 Score=139.57 Aligned_cols=348 Identities=7% Similarity=-0.073 Sum_probs=244.7
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCC---HHHHHHHHHHHHhcCC--cchhhHHhHHHHHHHcCCH----HH---
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGN---FVEALKLYDKAISMSP--ENAAYRSNRAATLTALGRL----TE--- 100 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~----~~--- 100 (543)
+...++.++...|.....|...+......|+ ++.+..+|++++...| .++..|..........++. ++
T Consensus 85 aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~ 164 (679)
T 4e6h_A 85 VYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHH
Confidence 4455677888999999999999999999999 9999999999999883 5777887776665555543 33
Q ss_pred -HHHHHHHHHhc----CCCChhHHHHHHHHHH---------HhCCHHHHHHHhcCCCCCCCh---HHHhHHHHHH-----
Q 009096 101 -AVSDCEEAVRL----DPGYNRAHQRLASLYF---------RLGQVENARHHLCFPGHHPDP---NELLKLQSFE----- 158 (543)
Q Consensus 101 -A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~----- 158 (543)
....|++|+.. +|.....|........ ..++.+.+...|.+++..|.. ..+......+
T Consensus 165 ~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~ 244 (679)
T 4e6h_A 165 IVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ 244 (679)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc
Confidence 44778887763 6666777776665543 344577888889888873321 1111000000
Q ss_pred -----------HHHHHHHh-h---------------------------------------------hhcC---------C
Q 009096 159 -----------KHLNRCAE-S---------------------------------------------RKIG---------D 172 (543)
Q Consensus 159 -----------~~~~~~~~-~---------------------------------------------~~~~---------~ 172 (543)
..+..+.. + .... .
T Consensus 245 ~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~ 324 (679)
T 4e6h_A 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH 324 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 00000000 0 0000 1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH-HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHH
Q 009096 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD-SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENA 251 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 251 (543)
.+.....|++++...|.. +.+|...+..+...|+.++|. ..|++++...|.+.. .|+..+......|++++|
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~-~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~------Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFA-PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV------LAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCCHHHH
Confidence 223456799999998876 899999999999999999997 999999999998743 344448889999999999
Q ss_pred HHHHHHHhhcC-----------CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCChhHHhHHH
Q 009096 252 VSSAEKAGLLD-----------YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-DSYNSILYCNRA 319 (543)
Q Consensus 252 ~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la 319 (543)
...|++++... |.+......+. ......+...+....+.|..+.|...|.+|++. .+....+|...|
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~-~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLK-SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 99999999752 43210000000 000011233456667788999999999999987 444567787778
Q ss_pred HHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---ChHHHHHHHH
Q 009096 320 ICWSKMGL-WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG---DNEVAESLHN 388 (543)
Q Consensus 320 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~ 388 (543)
.+..+.++ ++.|...|+++++..|+++..|...+......|+.+.|...|++++...|+ ...++..+..
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777654 899999999999999999999999999999999999999999999999884 3344444433
No 227
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.3e-14 Score=116.66 Aligned_cols=100 Identities=33% Similarity=0.476 Sum_probs=94.9
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
|.+++.++.+|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCC
Q 009096 125 LYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~ 144 (543)
++..+|++++|+..|+++++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999998866654
No 228
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=99.61 E-value=1.4e-15 Score=135.96 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=85.3
Q ss_pred hhhhhccCCCCce-eeeeeCCCCccccchhHhHHHHHhhCC-----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 417 EKFKAAISSPGVS-LVHFKEASSEKCEEISPFVNLLCVRYP-----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 417 ~~~~~~i~~~~~~-lv~f~~~~c~~c~~~~p~l~~l~~~~~-----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+......++++ ++.||++||++|+.+.|.+++++.+++ ++.|+.+|+++++.++++|+|.++||+++|++|+
T Consensus 124 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 203 (226)
T 1a8l_A 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGE 203 (226)
T ss_dssp HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTE
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCc
Confidence 4455555556677 999999999999999999999999986 6999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcC
Q 009096 491 KLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
.+.++.|. +.++|.++|++.+
T Consensus 204 ~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 204 DRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp EEEEEESCCCHHHHHHHHHHHH
T ss_pred eeEEEcCCCCHHHHHHHHHHhh
Confidence 99999998 9999999998753
No 229
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=99.40 E-value=4.6e-17 Score=126.71 Aligned_cols=90 Identities=26% Similarity=0.472 Sum_probs=83.0
Q ss_pred hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-
Q 009096 421 AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP- 498 (543)
Q Consensus 421 ~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 498 (543)
.....++++++.||++||++|+.+.|.++++.++++ ++.|+.+|+++++.++++|+|.++||++++++|+.+.++.|.
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 93 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQ 93 (106)
Confidence 444668899999999999999999999999999997 599999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHhc
Q 009096 499 SHQFLEDSANLA 510 (543)
Q Consensus 499 ~~~~~~~~~~~~ 510 (543)
+.+++.++|++.
T Consensus 94 ~~~~l~~~l~~~ 105 (106)
T 2yj7_A 94 PKEALKERIDKH 105 (106)
Confidence 899999998865
No 230
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.5e-15 Score=137.35 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=89.9
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+ +.+.|++.+ ..+++++|.||++||++|+.+.|.++++++++++ +.|+.+|++ ++..++++|+|.++||+++
T Consensus 19 vv~l-t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~ 97 (298)
T 3ed3_A 19 ISEL-TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97 (298)
T ss_dssp CEEC-CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEE
T ss_pred eEEe-CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEE
Confidence 4444 446677766 5578999999999999999999999999999987 899999988 7899999999999999999
Q ss_pred EECCe-----------------EEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGE-----------------KLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~-----------------~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+ ...++.|. +.+.|.++|.+.+.++
T Consensus 98 ~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~ 144 (298)
T 3ed3_A 98 FRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSY 144 (298)
T ss_dssp EECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCC
T ss_pred EECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccc
Confidence 99997 36678888 9999999999887554
No 231
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=99.60 E-value=1.9e-15 Score=136.77 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=90.8
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+ +.+.|+..+..+++++|+||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++
T Consensus 17 v~~l-~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 95 (241)
T 3idv_A 17 VLVL-NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKI 95 (241)
T ss_dssp EEEE-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cEEe-cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEE
Confidence 4444 4567778888889999999999999999999999999987743 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+.+ ++.|. +.+++.++|++...+.
T Consensus 96 ~~~g~~~-~~~g~~~~~~l~~~i~~~~~~~ 124 (241)
T 3idv_A 96 LKKGQAV-DYEGSRTQEEIVAKVREVSQPD 124 (241)
T ss_dssp EETTEEE-ECCSCSCHHHHHHHHHHHHSTT
T ss_pred EcCCCcc-cccCcccHHHHHHHHhhccCcc
Confidence 9999988 57777 9999999999876654
No 232
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.60 E-value=1.1e-15 Score=151.68 Aligned_cols=144 Identities=21% Similarity=0.326 Sum_probs=126.8
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------------
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------------ 311 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------ 311 (543)
.++++++|+..|++++...|+....+ ..+|..++..|+|++|+..|+++++++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~------------~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~ 313 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIV------------KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE 313 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHH------------HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHH
Confidence 56778888888887777766665553 558999999999999999999999999998
Q ss_pred ---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 312 ---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 312 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
..+|+++|.||.++|++++|+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+..
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 009096 389 AQVALKKSRGE 399 (543)
Q Consensus 389 ~~~~l~~~~~~ 399 (543)
+...+++....
T Consensus 394 ~~~~~~~~~~a 404 (457)
T 1kt0_A 394 CQKKAKEHNER 404 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888766543
No 233
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.60 E-value=4.1e-14 Score=111.88 Aligned_cols=111 Identities=29% Similarity=0.496 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
.+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 360 GRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 360 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
|++++|...|+++++++|+++.++..+..+.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988777654
No 234
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=2.6e-14 Score=144.75 Aligned_cols=163 Identities=14% Similarity=0.057 Sum_probs=100.3
Q ss_pred hhhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC----------hhHHHHHhhcCCCCCCCCChhHHHHHHH
Q 009096 167 SRKIGDW-KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ----------NEDADSCLSNMPKFEHYSPPSQVKFLVW 235 (543)
Q Consensus 167 ~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
....|.+ ++|+..+++++..+|++ ..+|+.++.++..+++ +++++..++++++.+|.+.
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~-~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--------- 107 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--------- 107 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---------
Confidence 3334433 45567777777777666 6667777776666666 6666666666666666662
Q ss_pred HHHHHHHHhhcC---------hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 009096 236 LLKLMFNISELR---------FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR-RYSEACSAYGEGL 305 (543)
Q Consensus 236 ~~~a~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al 305 (543)
.++...+- ++++++.++++++.+|.+..+|.. ++.++...| .++++++++.+++
T Consensus 108 ----~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~------------R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 108 ----GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDY------------RRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp ----HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHTCCCHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHH------------HHHHHHHcCCChHHHHHHHHHHH
Confidence 12222222 155666666666666666666532 466666666 6666666666666
Q ss_pred ccCCCChhHHhHHHHHHHHc--------------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 306 KYDSYNSILYCNRAICWSKM--------------GLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 306 ~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
+.+|.+..+|++++.++..+ +.+++|++++.+++.++|++..+|+.++.+
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 66666666666666666654 445666666666666666666666655544
No 235
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=2e-15 Score=139.78 Aligned_cols=194 Identities=10% Similarity=-0.028 Sum_probs=133.5
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..+..+|..+...|++++|+..|++++..+|.+ ..++..+|.++..+|++++|+..++++++.+|++.. +++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~ 77 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------AHFF 77 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------HHHH
Confidence 346677888888888888888888888888876 677788888888888888888888888888887744 3444
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
+|.++...|++++|+..|+++++++|++...... ...... +..++...........|.+..+...
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD------------DIPSAL---RIAKKKRWNSIEERRIHQESELHSY 142 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS------------HHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH------------HHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4888888888888888888888877765321100 000000 1112222222333456666777666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhc
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL-GRWSEAVRDYEALRRE 375 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 375 (543)
++.++ .|++++|++.++++++.+|++......++.++... +.+++|.+.|.++.+.
T Consensus 143 l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 143 LTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 76654 57888888888888888888777777777666665 6677777777776553
No 236
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-14 Score=116.43 Aligned_cols=113 Identities=24% Similarity=0.484 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
++++|+.+|+++++++|++..++..+..+....
T Consensus 99 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 99 DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999999999999999999998888776654
No 237
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.59 E-value=5.4e-15 Score=119.87 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=94.1
Q ss_pred HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW----------ENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 289 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
.+.+.|++|++.++++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++.++|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3556799999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cc-----------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 359 LG-----------RWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 359 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+| ++++|+++|++|++++|++...+..+..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 85 8999999999999999999988777665433
No 238
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=7.8e-14 Score=112.51 Aligned_cols=115 Identities=28% Similarity=0.531 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
++++|+.+|+++++++|+++.++..++.+...+++
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888776643
No 239
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=146.02 Aligned_cols=100 Identities=22% Similarity=0.288 Sum_probs=89.1
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC------CC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY------PY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~------~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+.+.|..++..+++++|.||++||++|+.+.|.+++++..+ .+ +.|++||++.+..++++|+|.++||+++|+
T Consensus 11 ~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~ 90 (382)
T 2r2j_A 11 DTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFR 90 (382)
T ss_dssp CTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEE
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEe
Confidence 34667777777899999999999999999999999999876 22 999999999999999999999999999999
Q ss_pred CCeEEEE-EcCC-CHHHHHHHHHhcCCCC
Q 009096 488 NGEKLKE-MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 488 ~g~~~~~-~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+|+.+.+ +.|. +.+.|.++|++.+.++
T Consensus 91 ~G~~~~~~~~G~~~~~~l~~~i~~~~~~~ 119 (382)
T 2r2j_A 91 NGMMMKREYRGQRSVKALADYIRQQKSDP 119 (382)
T ss_dssp TTEEEEEECCSCCSHHHHHHHHHHHHSCC
T ss_pred CCcEeeeeecCcchHHHHHHHHHHhccCC
Confidence 9999885 8898 9999999999887654
No 240
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=4.8e-14 Score=113.76 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh---hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS---ILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 354 (543)
++.+|..+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 35589999999999999999999999999988 799999999999999999999999999999999 899999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
++..+|++++|+..|+++++..|+++.+......+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999988766655443
No 241
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.3e-15 Score=123.20 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=80.2
Q ss_pred CCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCc--CcHHHHHHcCCCcccEEEEE-ECCeEEEEEcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVE--ESLAIAKSEGVRTVPTFKIY-KNGEKLKEMIN 497 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g 497 (543)
.+++++|.||++||++|+.+.|.+ +.+.+.+. ++.++.+|++ ....++++|+|.++||++++ ++|+++.++.|
T Consensus 26 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G 105 (130)
T 2kuc_A 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVG 105 (130)
T ss_dssp HSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEES
T ss_pred cCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecC
Confidence 578999999999999999999998 66666553 4889999998 57899999999999999999 69999999999
Q ss_pred C-CHHHHHHHHHhcCCCC
Q 009096 498 P-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 498 ~-~~~~~~~~~~~~~~~~ 514 (543)
. +.++|.++|++.+.+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 106 AEDAPELLKKVKLGVESE 123 (130)
T ss_dssp CCCHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 8 9999999999987664
No 242
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=4.5e-14 Score=114.57 Aligned_cols=95 Identities=26% Similarity=0.408 Sum_probs=85.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
++++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hCCHHHHHHHhcCCC
Q 009096 129 LGQVENARHHLCFPG 143 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~ 143 (543)
.|++++|+..+++++
T Consensus 82 ~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 82 QGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 888888887775544
No 243
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=99.58 E-value=4.5e-15 Score=134.30 Aligned_cols=101 Identities=21% Similarity=0.328 Sum_probs=90.0
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.+...+..++++++.||++||++|+.+.|.+.+++.++ +++.|+.+|++++++++++|+|.++||+++|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 213 (241)
T 3idv_A 134 VLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK 213 (241)
T ss_dssp ECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred eccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEEC
Confidence 3455677777777889999999999999999999999998876 349999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|+++. +.|. +.++|.++|++...++
T Consensus 214 g~~~~-~~g~~~~~~l~~~l~~~~~~~ 239 (241)
T 3idv_A 214 GRPYD-YNGPREKYGIVDYMIEQSGAA 239 (241)
T ss_dssp TEEEE-CCSCCSHHHHHHHHHHHTTCT
T ss_pred CeEEE-ecCCCCHHHHHHHHHhhhCCC
Confidence 99887 6787 9999999999987654
No 244
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=99.58 E-value=1.3e-15 Score=127.09 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcC---CCcccEEEEEEC-CeEEEEEcCCCH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEG---VRTVPTFKIYKN-GEKLKEMINPSH 500 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~---v~~~Pt~~~~~~-g~~~~~~~g~~~ 500 (543)
.++++++.||++|||+|+.+.|.|++++++++++.|..+|+|++++++.+|+ |.++||++++++ |+++.++. ..+
T Consensus 53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g-~~p 131 (167)
T 1z6n_A 53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFV-ERP 131 (167)
T ss_dssp CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEE-SSC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEEc-CCC
Confidence 3578999999999999999999999999999999999999999999999997 999999999986 58888774 444
Q ss_pred HHHHHHHHhc
Q 009096 501 QFLEDSANLA 510 (543)
Q Consensus 501 ~~~~~~~~~~ 510 (543)
..+.+.++++
T Consensus 132 ~~~~~~i~~~ 141 (167)
T 1z6n_A 132 QAVLDGGPQA 141 (167)
T ss_dssp HHHHHHCHHH
T ss_pred HHHHHhHHHH
Confidence 5555666553
No 245
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.58 E-value=7.1e-14 Score=123.72 Aligned_cols=148 Identities=12% Similarity=0.022 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 009096 194 LVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLT 273 (543)
Q Consensus 194 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 273 (543)
.++.+|..+...|++++|+..|++++ .| + ...+..+|.++...|++++|+..|++++..+|++..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 74 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-H------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY---- 74 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH----
Confidence 45678999999999999999999996 22 2 23566679999999999999999999999999998775
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh----------------hHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS----------------ILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
..+|.++...|++++|+..|+++++..|.+. .+++++|.++..+|++++|+..|++
T Consensus 75 --------~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 75 --------FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp --------HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3479999999999999999999999888776 9999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
+++++|++. .+..++|+..+++...
T Consensus 147 al~~~p~~~------------~~~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 147 ATSMKSEPR------------HSKIDKAMECVWKQKL 171 (213)
T ss_dssp HHTTCCSGG------------GGHHHHHHHHHHTTCC
T ss_pred HHHcCcccc------------cchHHHHHHHHHhccc
Confidence 999999863 3455666666554433
No 246
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=99.57 E-value=2.5e-15 Score=121.45 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=84.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCc--ccEEEEEEC--C
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRT--VPTFKIYKN--G 489 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~--~Pt~~~~~~--g 489 (543)
+...|.+.+..+.+++++||++ |++|+++.|.|++++++|.+ +.|+++|+++++.+++.|||++ +||+++|++ |
T Consensus 12 t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~g 90 (133)
T 2djk_A 12 GPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKN 90 (133)
T ss_dssp CHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTC
T ss_pred ChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCcC
Confidence 3455666677788999999999 89999999999999999976 9999999999999999999999 999999997 7
Q ss_pred eEEEEEc--CC-CHHHHHHHHHhcC
Q 009096 490 EKLKEMI--NP-SHQFLEDSANLAP 511 (543)
Q Consensus 490 ~~~~~~~--g~-~~~~~~~~~~~~~ 511 (543)
+. .+.. |. +++.|+++|++++
T Consensus 91 ~~-~~~~~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 91 QK-FPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp CB-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred cc-cCCCCccccCHHHHHHHHHHHH
Confidence 77 4665 87 9999999999764
No 247
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=8.9e-14 Score=129.81 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP-----QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVK 231 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 231 (543)
...+...+..+...|++++|+..+.++++..+.... .++..+|.++...|++++|+..+++++...+........
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 445667788889999999999999999998765421 335568889999999999999999999877766555555
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHh---hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAG---LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
..++..+|.++...|++++|+.+|++++ +..|++.... ...+.++|.++...|+|++|+.+|++++++.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch--------HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6678888999999999999999999999 5566654432 0123568999999999999999999999875
Q ss_pred CC------ChhHHhHHHHHHHHccCHHHH-HHHHHHHHhh
Q 009096 309 SY------NSILYCNRAICWSKMGLWENS-IEDCNVALRI 341 (543)
Q Consensus 309 p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 341 (543)
++ .+.+++++|.+|..+|++++| ..+|++++.+
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 32 267899999999999999999 8889999875
No 248
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=4.2e-15 Score=130.05 Aligned_cols=171 Identities=11% Similarity=-0.020 Sum_probs=120.9
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH----HHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS----VLT 273 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~l~ 273 (543)
.+......|++++|.+.+...... .......+..+|..+...|++++|+..|++++.+.|.++.... ...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp ------------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 455566667777776666544322 2223445667799999999999999999999999888761000 000
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
.......+.++|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 00012234568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHH-HHHHHHHh
Q 009096 354 VSNEKLGRWSEAV-RDYEALRR 374 (543)
Q Consensus 354 ~~~~~~g~~~~A~-~~~~~al~ 374 (543)
.++..+++..++. ..|.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988887 44444443
No 249
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.57 E-value=4e-14 Score=119.66 Aligned_cols=115 Identities=11% Similarity=0.029 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
...++.+|.++...|++++|+..|++++.++|++..++ ..+|.++...|++++|+..|+++++++|++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYL------------SNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHH------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 44667779999999999999999999999999998875 447999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
+.+|+++|.++..+|++++|+.+|+++++++|++..+++.++.....
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777765443
No 250
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=99.57 E-value=4.5e-15 Score=108.45 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=66.4
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
++.||++||++|+.+.|.|+++..++ +.++|++++++++.+||++ +||+++ +||+++. |. ++++|+++|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l~ 73 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWLD 73 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHHH
Confidence 78899999999999999999987665 6899999999999999998 999999 9999885 66 9999999999
Q ss_pred hcCC
Q 009096 509 LAPS 512 (543)
Q Consensus 509 ~~~~ 512 (543)
+.+.
T Consensus 74 ~~~~ 77 (87)
T 1ttz_A 74 AAPH 77 (87)
T ss_dssp TCC-
T ss_pred HHHH
Confidence 8654
No 251
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=99.57 E-value=1.1e-14 Score=139.13 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=90.0
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHh-------HHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcc
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPF-------VNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTV 480 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~-------l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~ 480 (543)
+..+ +.+.|++.+..+++++|.||++||+ |+.+.|. ++++++.+. ++.|++||+++++.++++|||.++
T Consensus 13 v~~l-~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~ 90 (350)
T 1sji_A 13 VVSL-TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEE 90 (350)
T ss_dssp CEEE-CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCST
T ss_pred cEEC-CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCcc
Confidence 3444 4567788888889999999999999 9999888 899998875 599999999999999999999999
Q ss_pred cEEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 481 PTFKIYKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 481 Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
||+++|++|+ +.++.|. +.+.|.++|++.+.++
T Consensus 91 Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~~~~ 124 (350)
T 1sji_A 91 GSLYVLKGDR-TIEFDGEFAADVLVEFLLDLIEDP 124 (350)
T ss_dssp TEEEEEETTE-EEEECSCCCHHHHHHHHHTTSSCS
T ss_pred ceEEEEECCc-EEEecCCCCHHHHHHHHHHhcCCc
Confidence 9999999999 5578898 9999999999988654
No 252
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=99.56 E-value=7.5e-15 Score=132.65 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=85.9
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeC--cCcHHHHHHcCCCcccE
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDV--EESLAIAKSEGVRTVPT 482 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~--~~~~~~~~~~~v~~~Pt 482 (543)
.+..++..+....+...+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|+ ++++.++++|+|.++||
T Consensus 13 ~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt 92 (244)
T 3q6o_A 13 PLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92 (244)
T ss_dssp SSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSE
T ss_pred CceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCE
Confidence 345555544444445667999999999999999999999999999996 499999999 67899999999999999
Q ss_pred EEEEECCeEEE-----EEcCCCHHHHHHHHHhcCCC
Q 009096 483 FKIYKNGEKLK-----EMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 483 ~~~~~~g~~~~-----~~~g~~~~~~~~~~~~~~~~ 513 (543)
+++|++|+... ++.|.+.+.|.++|.+++..
T Consensus 93 ~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~l~~ 128 (244)
T 3q6o_A 93 VRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128 (244)
T ss_dssp EEEECTTCCSSSCEECCCTTCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHHHHh
Confidence 99999743321 66677999999999987643
No 253
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=99.56 E-value=7.3e-15 Score=147.13 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=92.6
Q ss_pred hhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|.+.+... ++++|.||++||++|+.+.|.+++++..+++ +.|+.||+++++.++++|||.++||+++|++|+
T Consensus 7 ~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~ 86 (481)
T 3f8u_A 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE 86 (481)
T ss_dssp CTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTE
T ss_pred cHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCc
Confidence 456677777666 8999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+.++.|. +.+.|.++|.+.+.++
T Consensus 87 ~~~~~~G~~~~~~l~~~~~~~~~~~ 111 (481)
T 3f8u_A 87 EAGAYDGPRTADGIVSHLKKQAGPA 111 (481)
T ss_dssp EEEECCSCSSHHHHHHHHHHHTSCS
T ss_pred eeeeecCccCHHHHHHHHHhhcccC
Confidence 99999998 9999999999988664
No 254
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.56 E-value=4.4e-15 Score=112.13 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=70.2
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
...++.|+++||++|+.+.|.|++++++++ +.|..+|++++++++.+||++ +||+++|+||+++. .|. ++++|++
T Consensus 29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~--~g~~~~~~L~~ 104 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC--HYFLDSDVIGA 104 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE--CSSCCCHHHHH
T ss_pred ccEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE--ecCCCHHHHHH
Confidence 367999999999999999999999998875 999999999999999999997 99999999999873 465 9999998
Q ss_pred HH
Q 009096 506 SA 507 (543)
Q Consensus 506 ~~ 507 (543)
+|
T Consensus 105 ~L 106 (107)
T 2fgx_A 105 YL 106 (107)
T ss_dssp HH
T ss_pred Hh
Confidence 87
No 255
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.56 E-value=1.4e-13 Score=111.05 Aligned_cols=126 Identities=33% Similarity=0.495 Sum_probs=110.2
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+|.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.+|.++...|++++|+..| +++++..|.. ..++..++.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~-----------------------------------------~~~~~~~p~~-~~~~~~l~~ 122 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYY-----------------------------------------KKALELDPDN-ETYKSNLKI 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHSTTC-HHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH-----------------------------------------HHHHhcCccc-hHHHHHHHH
Confidence 9999999888888877766 4555566655 667777788
Q ss_pred HHHHccCh
Q 009096 201 AHLKLHQN 208 (543)
Q Consensus 201 ~~~~~~~~ 208 (543)
++...|++
T Consensus 123 ~~~~~~~~ 130 (131)
T 2vyi_A 123 AELKLREA 130 (131)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 88877765
No 256
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=2.1e-13 Score=115.18 Aligned_cols=117 Identities=25% Similarity=0.491 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
....+..+|..+...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..+++++..+|+++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34446778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 357 EKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
..+|++++|+.+|+++++++|++..++..+..+...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 128 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766664444
No 257
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-13 Score=113.93 Aligned_cols=108 Identities=32% Similarity=0.450 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+|..+...|++++|+..|+++++.+|++ ..++.++|.++...|++++|+..|++++..+|+++.+++.+|.++..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence 457999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+|++++|+.+|+++++++|+++.++..+..+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999999999999998776654
No 258
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=1.8e-14 Score=117.15 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=93.2
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc-------chh-----hHHhHHHHHHHcCCHHHHHHHHHHHHhc---
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE-------NAA-----YRSNRAATLTALGRLTEAVSDCEEAVRL--- 111 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (543)
.+..++.+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5678899999999999999999999999999998 433 9999999999999999999999999999
Q ss_pred ----CCCChhHH----HHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 112 ----DPGYNRAH----QRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+|++..+| +++|.++..+|++++|+..|+++++
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999999876
No 259
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=99.55 E-value=9.5e-15 Score=147.04 Aligned_cols=104 Identities=16% Similarity=0.285 Sum_probs=94.2
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+ +.+.|.+.+..+++++|.||++||++|+.+.|.+++++..+++ +.|++||++.++.++++|||.++||+++|+
T Consensus 16 v~~l-~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 94 (504)
T 2b5e_A 16 VVKL-ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFK 94 (504)
T ss_dssp CEEC-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cEEC-CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEe
Confidence 4444 4567778888889999999999999999999999999999974 999999999999999999999999999999
Q ss_pred CCeE--EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 488 NGEK--LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 488 ~g~~--~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+|+. +.++.|. +.+.|.++|.+.+.++
T Consensus 95 ~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~ 124 (504)
T 2b5e_A 95 NSDVNNSIDYEGPRTAEAIVQFMIKQSQPA 124 (504)
T ss_dssp TTCTTCEEECCSCCSHHHHHHHHHHHTSCS
T ss_pred CCccccceeecCCCCHHHHHHHHHHhcCCc
Confidence 9997 8889998 9999999999988654
No 260
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.55 E-value=1.2e-13 Score=111.44 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHH
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-------TKALLRR 352 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 352 (543)
.+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++...|++ +.+++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 356689999999999999999999999999999999999999999999999999999999998877 8999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 353 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
|.++...|++++|+.+|++++++.| ++.+...+..+...+++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999 6888888888877776543
No 261
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=1e-13 Score=112.28 Aligned_cols=118 Identities=11% Similarity=-0.009 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
...+..+|.++...|++++|+..|++++..+|++..++ ..+|.++...|++++|+.+|+++++.+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY------------SNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHH------------HHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 44667779999999999999999999999999987765 347999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+.+++.+|.++...|++++|+..|++++..+|++..++..++.++..+|+
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988774
No 262
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=99.54 E-value=8.2e-15 Score=140.43 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=86.4
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchh------HhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEIS------PFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~------p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+...|.+.+..+++++|.||++||++|.... |.+++++..+. ++.|++||+++++.+|++|||+++||+++
T Consensus 18 lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~ 97 (367)
T 3us3_A 18 VNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYV 97 (367)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEE
Confidence 34567778887889999999999999974443 68889888774 49999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+++ ++.|. +.+.|.++|++.+.++
T Consensus 98 f~~G~~~-~y~G~~~~~~i~~~i~~~~~~~ 126 (367)
T 3us3_A 98 FKEDEVI-EYDGEFSADTLVEFLLDVLEDP 126 (367)
T ss_dssp EETTEEE-ECCSCCSHHHHHHHHHHHHSCS
T ss_pred EECCcEE-EeCCCCCHHHHHHHHHHhcCCC
Confidence 9999886 67787 9999999999886543
No 263
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=3.5e-13 Score=107.59 Aligned_cols=111 Identities=26% Similarity=0.370 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
..+|.++...|++++|++.|+++++..|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
+++|+..|+++++.+|+++.+...++.+...
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 93 YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999888776544
No 264
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=6.7e-15 Score=146.11 Aligned_cols=159 Identities=17% Similarity=0.066 Sum_probs=123.9
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH---HHHHHHhHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE---IASVLTNVKMVVR 280 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~ 280 (543)
.++++++|+..++.++...|.. ...+..+|..++..|++++|+..|++++.++|.+.. .............
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 3455666666666555544433 345666699999999999999999999999888731 0000000112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+.++|.++..+|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHH
Q 009096 361 RWSEAVRD 368 (543)
Q Consensus 361 ~~~~A~~~ 368 (543)
++++|...
T Consensus 400 ~~~~a~~~ 407 (457)
T 1kt0_A 400 EHNERDRR 407 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 265
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.54 E-value=1e-13 Score=133.16 Aligned_cols=123 Identities=25% Similarity=0.397 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhc----------------cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLK----------------YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+..+..+|..++..|+|++|+..|+++++ .+|.+..++.++|.+|.++|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34456789999999999999999999998 77888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhh
Q 009096 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEF 400 (543)
Q Consensus 342 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~ 400 (543)
+|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..+..+...+++.+...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887665544
No 266
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=3.8e-13 Score=125.48 Aligned_cols=173 Identities=11% Similarity=-0.027 Sum_probs=139.5
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP-----QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
+...+..+...|++++|+..+++++...+.... .++..+|.++...+++++|+..+++++...+..........+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 445567788899999999999999997665422 133458888888999999999999999876665555455556
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcC----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLD----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY 310 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 310 (543)
+..+|.+|...|++++|+.+|+++++.. .+..... ..+.++|.++...|+|++|+.++++++++.+.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---------~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV---------KVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH---------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999532 2222222 22456899999999999999999999987543
Q ss_pred C------hhHHhHHHHHHHHcc-CHHHHHHHHHHHHhh
Q 009096 311 N------SILYCNRAICWSKMG-LWENSIEDCNVALRI 341 (543)
Q Consensus 311 ~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 341 (543)
. +.+++++|.+|..+| ++++|+.+|++++.+
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3 789999999999999 579999999999976
No 267
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=3.9e-14 Score=112.61 Aligned_cols=96 Identities=20% Similarity=0.078 Sum_probs=93.1
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
..++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHhcCCCC
Q 009096 129 LGQVENARHHLCFPGH 144 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~ 144 (543)
.|++++|+..|+++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998876
No 268
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=9.9e-14 Score=116.93 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=91.5
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc------------------CCcchhhHHhHHHHHHHcCCHHHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISM------------------SPENAAYRSNRAATLTALGRLTEAVSDCEE 107 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (543)
..+..+..+|..++..|+|++|+..|++++.. +|.+..+++++|.||..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35788999999999999999999999999998 777789999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+++++|+++.+|+.+|.++..+|++++|+..|++++.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 9999999999999999999999999988888755543
No 269
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=99.52 E-value=3.5e-14 Score=125.69 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=84.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeee--CCCCccccchhHhHHHHHhhC----CCeEEEEEeCcC-----cHHHHHHcCCC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFK--EASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEE-----SLAIAKSEGVR 478 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~--~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~-----~~~~~~~~~v~ 478 (543)
+..+ +...|.+++..+++++|+|| +|||+ +.|.|++++.++ +++.|++||+++ ++++|.+|+|.
T Consensus 18 v~~L-t~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~ 92 (248)
T 2c0g_A 18 CVDL-DELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD 92 (248)
T ss_dssp CEEC-CTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC
T ss_pred cEEC-CHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCC
Confidence 3444 44667778888889999999 99999 999999999987 459999999998 89999999999
Q ss_pred --cccEEEEEECCeE--EEEE--cCC-CHHHHHHHHHhcCCC
Q 009096 479 --TVPTFKIYKNGEK--LKEM--INP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 479 --~~Pt~~~~~~g~~--~~~~--~g~-~~~~~~~~~~~~~~~ 513 (543)
++||+++|+ |+. ..++ .|. +.+.|.++|++..+.
T Consensus 93 ~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~ 133 (248)
T 2c0g_A 93 DKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPL 133 (248)
T ss_dssp TTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred cCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhcc
Confidence 999999999 983 5566 787 999999999998763
No 270
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=99.52 E-value=1.2e-14 Score=111.50 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=63.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc------CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE------ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP- 498 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 498 (543)
+++++|.||++||++|+.+.|.|++++++++ .+|++ ++++++++|||.++||+++ ||+. +.|.
T Consensus 12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~~ 81 (106)
T 3kp8_A 12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVR 81 (106)
T ss_dssp HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-----EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCCC
Confidence 3567899999999999999999999998876 44554 6789999999999999777 9974 6788
Q ss_pred CHHHHHHHHHhc
Q 009096 499 SHQFLEDSANLA 510 (543)
Q Consensus 499 ~~~~~~~~~~~~ 510 (543)
+.++|.+++.-.
T Consensus 82 ~~~~l~~~~~~~ 93 (106)
T 3kp8_A 82 SLEALAVASGYP 93 (106)
T ss_dssp CHHHHHHHHTCC
T ss_pred CHHHHHHHhCCc
Confidence 999999998643
No 271
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.51 E-value=2.5e-14 Score=113.17 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=88.2
Q ss_pred hcCCHHHHHHHHHHHhcc---CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 290 SSRRYSEACSAYGEGLKY---DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
..|++++|+..|+++++. +|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHH
Q 009096 367 RDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 367 ~~~~~al~~~p~~~~~~~~l 386 (543)
..|+++++..|+++.+....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999876543
No 272
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=99.51 E-value=5.1e-14 Score=126.30 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=79.0
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC-----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-C
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY-----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-S 499 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~ 499 (543)
++.+++.||++||++|+.+.|.+++++..+ +++.+..+|++.+++++++|+|.++||+++ ||+++ +.|. +
T Consensus 138 ~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~~ 213 (243)
T 2hls_A 138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVPY 213 (243)
T ss_dssp SCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCC
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCCC
Confidence 456788999999999999999999999988 679999999999999999999999999988 99865 7788 9
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 009096 500 HQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~ 518 (543)
.++|.++|++.+......+
T Consensus 214 ~~~l~~~l~~~~~~~~~~~ 232 (243)
T 2hls_A 214 EEDFLDYVKSAAEGRLTVK 232 (243)
T ss_dssp HHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHhhcccccC
Confidence 9999999999876654443
No 273
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=99.50 E-value=7.4e-14 Score=123.31 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=82.4
Q ss_pred hhhhhhhccCCCCceeeeeeC--CCCccccchhHhHHHHHhhC---CCeEEEEEeCc-----CcHHHHHHcCCC--cccE
Q 009096 415 SLEKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVNLLCVRY---PYVHFFKVDVE-----ESLAIAKSEGVR--TVPT 482 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~-----~~~~~~~~~~v~--~~Pt 482 (543)
+...|...+..+++++|+||+ |||+ +.|.|++++..+ +++.|++||++ .+++++++|+|. ++||
T Consensus 11 t~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PT 86 (240)
T 2qc7_A 11 DTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPV 86 (240)
T ss_dssp CTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSE
T ss_pred CHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCE
Confidence 346677778778899999999 9999 999999999987 45999999955 489999999999 9999
Q ss_pred EEEEECCe--EEEEEcCC-CHHHHHHHHHhcC
Q 009096 483 FKIYKNGE--KLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 483 ~~~~~~g~--~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++|++|+ .+.++.|. +.+.|.++|++..
T Consensus 87 l~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 87 FYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp EEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred EEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 99999998 46788898 9999999999886
No 274
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.50 E-value=1.1e-12 Score=119.66 Aligned_cols=265 Identities=13% Similarity=0.063 Sum_probs=190.2
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
.+++.++.+ ...|-.|+|..++.... +..|.+ ....+.+.++|+.+|++.... . .+....+...++.
T Consensus 12 ~~~~~lf~i-kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~ 79 (310)
T 3mv2_B 12 QDPMDYFNI-KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQ 79 (310)
T ss_dssp ---CCTHHH-HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHH
Confidence 456666654 44567899999998443 444443 356677889999999988521 1 1222234444444
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-DSSPQLVACKAEAHL 203 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~a~~~~ 203 (543)
.+. ++ |+..|++.+....+.. ..++..|.++...|++++|+..+.+.+..+| .....++...+.++.
T Consensus 80 ~~~--~~---a~~~l~~l~~~~~~~~-------~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLKDKQNSP-------YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHT--TT---CCHHHHHTTTTSCCCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred Hhc--cc---HHHHHHHHHhcCCCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 442 22 7888888876321111 1245678888899999999999999999887 345788889999999
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL--RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 281 (543)
.+|+.+.|.+.++++.+.+|+..+........+..+.+....| ++.+|...|+++....|+......+
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lL---------- 217 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGL---------- 217 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHH----------
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHH----------
Confidence 9999999999999998888731011111222223344455555 9999999999999888872222111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcc----------CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKY----------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
++ ++..+|++++|.+.++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 218 --ln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 218 --LN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp --HH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred --HH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 23 799999999999999988876 48899999999999999998 99999999999999998654
No 275
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=1.6e-13 Score=111.90 Aligned_cols=103 Identities=26% Similarity=0.352 Sum_probs=97.3
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
..+|.++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCC
Q 009096 122 LASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+|.++..+|++++|+..|++++.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 276
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=99.49 E-value=5.3e-14 Score=125.92 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=82.1
Q ss_pred hhhhhhccCCCCce-eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVS-LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~-lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.+...+..++++ ++.||++||++|+.+.|.+++++.+++++.|+.+|++++++++++|+|.++||+++ ||+ +.+
T Consensus 125 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~~ 201 (229)
T 2ywm_A 125 EKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VAE 201 (229)
T ss_dssp HHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TEE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EEE
Confidence 34555555555666 78999999999999999999999999889999999999999999999999999998 898 677
Q ss_pred EcCC-CHHHHHHHHHhcC
Q 009096 495 MINP-SHQFLEDSANLAP 511 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~ 511 (543)
+.|. +.++|.++|++.+
T Consensus 202 ~~G~~~~~~l~~~l~~~~ 219 (229)
T 2ywm_A 202 FVGAQPENAFLGYIMAVY 219 (229)
T ss_dssp EESCCCHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHh
Confidence 8898 9999999998765
No 277
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=6e-14 Score=120.21 Aligned_cols=128 Identities=12% Similarity=0.069 Sum_probs=99.0
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|++++|+..+++++..+|.+.. .+..+|.++...|++++|+..|++++..+|++..++ ..
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------~~ 83 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSE------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY------------AA 83 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHH------------HH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH------------HH
Confidence 445566666666666666665533 334448888888888888888888888888887764 34
Q ss_pred HHHH-HHhcCCH--HHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 284 RGNN-LFSSRRY--SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 284 ~g~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
+|.+ +...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 6888 7788998 9999999999999999999999999999999999999999999999999876544
No 278
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.49 E-value=1.4e-13 Score=107.69 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN--YTKALLRRAVSNEKL 359 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 359 (543)
..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..|+++++.+|+ +..+++.+|.++...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred -cCHHHHHHHHHHHHhcCCCCh
Q 009096 360 -GRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 360 -g~~~~A~~~~~~al~~~p~~~ 380 (543)
|++++|+++++++++..|.++
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCCCC
T ss_pred hCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999864
No 279
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=99.49 E-value=7.7e-14 Score=100.95 Aligned_cols=71 Identities=11% Similarity=0.187 Sum_probs=63.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~ 506 (543)
.+.||++||++|+.+.|.++++.++++ ++.++.+| +.+++++|||.++||+++ ||+.+.+ |. +.+++.++
T Consensus 3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~~ 75 (77)
T 1ilo_A 3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKKI 75 (77)
T ss_dssp EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHHH
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHHH
Confidence 588999999999999999999999997 58899998 788999999999999998 9998887 65 78888877
Q ss_pred H
Q 009096 507 A 507 (543)
Q Consensus 507 ~ 507 (543)
|
T Consensus 76 l 76 (77)
T 1ilo_A 76 L 76 (77)
T ss_dssp C
T ss_pred h
Confidence 5
No 280
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.49 E-value=9.8e-14 Score=113.12 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=79.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC----------------------cHHHHHHcCCCcccE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE----------------------SLAIAKSEGVRTVPT 482 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~----------------------~~~~~~~~~v~~~Pt 482 (543)
.++++++.||++||++|+.+.|.+.++.++++++.|+.|+++. ...+++.|+|.++||
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 102 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA 102 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCE
Confidence 4679999999999999999999999999999999999999977 678999999999999
Q ss_pred EEEE-ECCeEEEEEc---CC-CHHHHHHHHHhcC
Q 009096 483 FKIY-KNGEKLKEMI---NP-SHQFLEDSANLAP 511 (543)
Q Consensus 483 ~~~~-~~g~~~~~~~---g~-~~~~~~~~~~~~~ 511 (543)
++++ ++|+++ ++. |. +.+++.++|++++
T Consensus 103 ~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 103 FVFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 9999 599999 999 98 9999999999865
No 281
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.49 E-value=1.8e-14 Score=122.65 Aligned_cols=88 Identities=9% Similarity=0.098 Sum_probs=73.8
Q ss_pred CCCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCcCcHHH--------------------------HH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVEESLAI--------------------------AK 473 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~~~~~~--------------------------~~ 473 (543)
..+++++|+||++||++|+.+.+.+ .++.+.+. ++.|+.||+++...+ +.
T Consensus 45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (172)
T 3f9u_A 45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRV 124 (172)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHH
Confidence 5688999999999999999984433 45554444 599999999877655 78
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEcCC-C-HHHHHHHHHhcC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKEMINP-S-HQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~-~~~~~~~~~~~~ 511 (543)
+|+|.++||++++ ++|+++.+..|. + .+++.++|++.+
T Consensus 125 ~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l 165 (172)
T 3f9u_A 125 KFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL 165 (172)
T ss_dssp HHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred HcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence 9999999999999 699999999998 6 999999998754
No 282
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.48 E-value=5.9e-14 Score=139.82 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=118.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
+..++.++.+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..|+++++++|+++.+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA--H 202 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~--~ 202 (543)
+|..+|++++|+..| +++++.+|+. ..++..++.+ +
T Consensus 83 ~~~~~g~~~eA~~~~-----------------------------------------~~al~~~p~~-~~~~~~l~~~~~~ 120 (477)
T 1wao_1 83 SNMALGKFRAALRDY-----------------------------------------ETVVKVKPHD-KDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHTCHHHHHHHH-----------------------------------------HHHHHHSTTC-TTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHH
Confidence 999998888887766 4556666766 4566667777 8
Q ss_pred HHccChhHHHHHhh-----------cCCCCCCCCCh
Q 009096 203 LKLHQNEDADSCLS-----------NMPKFEHYSPP 227 (543)
Q Consensus 203 ~~~~~~~~A~~~~~-----------~~~~~~~~~~~ 227 (543)
...|++++|++.++ +++...|+...
T Consensus 121 ~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 121 VKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 88999999999999 88888877633
No 283
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=1.5e-12 Score=102.64 Aligned_cols=113 Identities=13% Similarity=0.017 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
..+..+|..+...|++++|+..|++++..+|++..++ ..+|.++...|++++|+..++++++.+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY------------SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH------------HHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 3556669999999999999999999999999998765 3479999999999999999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
.++..+|.++...|++++|+..|+++++.+|+++.++..++.+..
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999888753
No 284
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.48 E-value=1.7e-12 Score=103.56 Aligned_cols=116 Identities=25% Similarity=0.302 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
..+..+|.++...|++++|+..+++++...|++...+ ..+|.++...|++++|+..|+++++..|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW------------YNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH------------HHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 3456669999999999999999999999999987764 3479999999999999999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987765
No 285
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.47 E-value=3.3e-15 Score=121.90 Aligned_cols=93 Identities=11% Similarity=-0.015 Sum_probs=69.1
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHH--hhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEEEE-CCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLC--VRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKIYK-NGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~--~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~~~-~g~~~ 492 (543)
+.+..+...+++++|+||++||++|+.+.|.+.+.. .++.+..|+.||+| +..+++..++|.++||+++|+ +|+++
T Consensus 35 ~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v 114 (151)
T 3ph9_A 35 EGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVR 114 (151)
T ss_dssp HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBC
T ss_pred HHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEE
Confidence 334445566899999999999999999999987642 22323346666664 345678899999999999998 99999
Q ss_pred EEEcCC--------CHHHHHHHHHh
Q 009096 493 KEMINP--------SHQFLEDSANL 509 (543)
Q Consensus 493 ~~~~g~--------~~~~~~~~~~~ 509 (543)
.+++|+ +++++.++|+.
T Consensus 115 ~~~~G~~~~~~~~~~~~~~~~ll~~ 139 (151)
T 3ph9_A 115 ADIAGRYSNRLYTYEPRDLPLLIEN 139 (151)
T ss_dssp TTCCCSCTTSTTCCCGGGHHHHHHH
T ss_pred EEEeCCcCCcccccchhhHHHHHHH
Confidence 999995 34555555543
No 286
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.47 E-value=4.5e-14 Score=117.37 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=76.4
Q ss_pred CCCCceeeeee-CCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcCc-----------HHHHHHcCCCcccEEEEE-
Q 009096 424 SSPGVSLVHFK-EASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEES-----------LAIAKSEGVRTVPTFKIY- 486 (543)
Q Consensus 424 ~~~~~~lv~f~-~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~~-----------~~~~~~~~v~~~Pt~~~~- 486 (543)
..+++++|+|| ++||++|+.+.|.+ .++.+.+ .++.++.+|+++. ..++++|+|.++||++++
T Consensus 45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d 124 (154)
T 2ju5_A 45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID 124 (154)
T ss_dssp HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence 34789999999 99999999999999 7776665 4599999999765 489999999999999999
Q ss_pred ECCeEEEEEcCC---CHHHHHHHHHhcCC
Q 009096 487 KNGEKLKEMINP---SHQFLEDSANLAPS 512 (543)
Q Consensus 487 ~~g~~~~~~~g~---~~~~~~~~~~~~~~ 512 (543)
++|+++.+. |. +.+++.++|++.+.
T Consensus 125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 125 AEGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp TTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 799999999 86 58899999987653
No 287
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.5e-12 Score=106.17 Aligned_cols=107 Identities=24% Similarity=0.329 Sum_probs=98.2
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (543)
.......|.++..++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|+
T Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCCCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred CcCCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 34556678899999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++.+++.+|.++..+|++++|+.+|++++.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999888888755543
No 288
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.9e-13 Score=135.27 Aligned_cols=217 Identities=9% Similarity=-0.007 Sum_probs=148.3
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchh-----------------hHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAA-----------------YRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
|...+..|..+...|+|++|++.|.++++..|.... ++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456777888889999999999999999998876543 345555555555555555555555554
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-- 188 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-- 188 (543)
..+....+.. ........+..+...|++++|+..+.+++...+
T Consensus 84 ~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 84 YMMQFAKSKT-----------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHTSCHHHH-----------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHccchHH-----------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 4333221110 011123344555566777777777777765432
Q ss_pred ---CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCC--
Q 009096 189 ---DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDY-- 263 (543)
Q Consensus 189 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-- 263 (543)
.....++..+|.++...|++++|+..+++++.......+.......+...+.++...|++++|...+++++...+
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 122557788999999999999999999988765443333334456677889999999999999999999986543
Q ss_pred -CcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009096 264 -SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307 (543)
Q Consensus 264 -~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 307 (543)
+...... ..+...|..+...++|.+|..+|.++++.
T Consensus 209 ~~~~~~~~--------~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 209 YCPTQTVA--------ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CCCHHHHH--------HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCchHHHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222211 11345789999999999999999999865
No 289
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=7.5e-14 Score=132.74 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH-----HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV-----LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
.+..+|..++..|++++|+..|++++...|++...... .........+.++|.++...|+|++|+..|+++++++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555777777777777777777777777765420000 0000001124567888888888888888888888888
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCChH
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN-EKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++...|.+++...|+++.
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 888888888888888888888888888888888888888888888774 4556777788888888888887654
No 290
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=5.6e-14 Score=139.98 Aligned_cols=130 Identities=16% Similarity=0.121 Sum_probs=117.2
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
+|..+...|++++|+..|+++++.+|++..++ ..+|.++...|++++|++.|+++++++|+++.++++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 79 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYY------------GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 37788899999999999999999999998775 447999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHccCHHHHHHHHH-----------HHHhcCCCC
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS--NEKLGRWSEAVRDYE-----------ALRRELPGD 379 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 379 (543)
+|.+|..+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ ++++++|+.
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999999999999 889999999999999 888888764
No 291
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.46 E-value=1.3e-13 Score=136.74 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=86.3
Q ss_pred CeEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCc--CcHHHHHHcCCCccc
Q 009096 409 EVEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVE--ESLAIAKSEGVRTVP 481 (543)
Q Consensus 409 ~~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~--~~~~~~~~~~v~~~P 481 (543)
.+..++. +.|.. +...+++++|+||++||++|+.+.|.++++++++++ +.|+.||++ ++.+++++|+|.++|
T Consensus 13 ~V~~Lt~-~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~P 91 (519)
T 3t58_A 13 PLTLLDA-DSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFP 91 (519)
T ss_dssp SSEEECT-TTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBS
T ss_pred CcEECCh-HHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccC
Confidence 3445544 45555 446678999999999999999999999999998864 999999995 589999999999999
Q ss_pred EEEEEE----CCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 482 TFKIYK----NGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 482 t~~~~~----~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|+++|+ +|+.+....|. +.++++++|++.+..
T Consensus 92 Tl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~ 128 (519)
T 3t58_A 92 TVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128 (519)
T ss_dssp EEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTT
T ss_pred EEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhh
Confidence 999998 45556666666 999999999987654
No 292
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.46 E-value=2e-13 Score=110.66 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=82.8
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCh
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR----------YSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~ 312 (543)
.+.+.+++|+..++++++++|++.+++. ++|.++...++ +++|+..|+++++++|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~------------n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLT------------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 4567899999999999999999999864 35777777766 4699999999999999999
Q ss_pred hHHhHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCH
Q 009096 313 ILYCNRAICWSKMG-----------LWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 313 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 346 (543)
.+|+++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999885 89999999999999999974
No 293
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.45 E-value=1e-13 Score=131.73 Aligned_cols=112 Identities=22% Similarity=0.316 Sum_probs=100.6
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-----------------hhHHhHHHHHHHc
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-----------------AYRSNRAATLTAL 95 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~ 95 (543)
+...+...+...+..+..++.+|..++..|+|++|+..|++++...|++. .+++++|.+|..+
T Consensus 164 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 164 GKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243 (338)
T ss_dssp CBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555666788899999999999999999999999999999999876 4899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 96 GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
|++++|+.+|+++++++|++..+|+++|.+|..+|++++|+..|+++++
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888876
No 294
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=99.45 E-value=2.8e-13 Score=110.35 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=78.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+.+.|.+.++.++++++.|+.|+++. ...+++.|||.++|
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 103 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP 103 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCc
Confidence 4678999999999999999999999999999999999999854 56789999999999
Q ss_pred EEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 482 TFKIYK-NGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 482 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|++++. +|+++ ++.|. +.+++.++|++++.
T Consensus 104 ~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 104 AYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp EEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred eEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 999994 99999 99998 99999999998764
No 295
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=99.45 E-value=2.2e-13 Score=112.35 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=77.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.|+.|+++. ...+++.|+|
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 57899999999999999999999999999997 59999999864 5689999999
Q ss_pred CcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 478 RTVPTFKIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 478 ~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
.++||++++ ++|+++.+..|. +.+++.++|+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 999999999 699999999998 9999998874
No 296
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=99.44 E-value=1.9e-13 Score=113.18 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=80.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC---------------------------cCcHHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV---------------------------EESLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~---------------------------~~~~~~~~~~~ 476 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.+++ +....+++.||
T Consensus 28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 107 (148)
T 2b5x_A 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (148)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence 568999999999999999999999999999977 99999985 44568999999
Q ss_pred CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|.++||++++ ++|+++.+..|. +.+++.+.|++.+..
T Consensus 108 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 9999999999 699999999998 999999999987653
No 297
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=2e-13 Score=106.72 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=97.6
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG--YNRAHQR 121 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 121 (543)
+|.++..++.+|.+++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHh-CCHHHHHHHhcCCCC
Q 009096 122 LASLYFRL-GQVENARHHLCFPGH 144 (543)
Q Consensus 122 la~~~~~~-g~~~~A~~~~~~a~~ 144 (543)
+|.++..+ |++++|+.++++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999 999999999988876
No 298
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=4.9e-13 Score=117.17 Aligned_cols=167 Identities=10% Similarity=-0.022 Sum_probs=118.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHhCC
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL------DPGYNRAHQRLASLYFRLGQ 131 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 131 (543)
++..|++++|...++......+....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999999666555433366889999999999999999999999999983 44456778888888888888
Q ss_pred HHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHccCh
Q 009096 132 VENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD---SSPQLVACKAEAHLKLHQN 208 (543)
Q Consensus 132 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~a~~~~~~~~~ 208 (543)
+++|+..+++++. .++ ..++ ....++..+|.++...|++
T Consensus 82 ~~~A~~~~~~al~----------------------------------~~~----~~~~~~~~~~~~~~~lg~~~~~~g~~ 123 (203)
T 3gw4_A 82 WDAARRCFLEERE----------------------------------LLA----SLPEDPLAASANAYEVATVALHFGDL 123 (203)
T ss_dssp HHHHHHHHHHHHH----------------------------------HHH----HSCCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHH----------------------------------HHH----HcCccHHHHHHHHHHHHHHHHHhCCH
Confidence 8888888765543 000 0111 1134566677777777888
Q ss_pred hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 209 EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
++|+..+++++...+...........+..+|.++...|++++|+..+++++.+.
T Consensus 124 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888777777776554444444444556777999999999999999999988654
No 299
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=99.44 E-value=2.7e-13 Score=112.68 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=80.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------cHHHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------SLAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------~~~~~~~~~v~~~ 480 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.|+.|+++. ...+++.|+|.++
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 104 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 104 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence 46799999999999999999999999999886 49999999876 3478999999999
Q ss_pred cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCC
Q 009096 481 PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYKL 517 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 517 (543)
||++++ ++|+++.++.|. +.+++.++|++++......
T Consensus 105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~~~ 143 (151)
T 2f9s_A 105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGETSG 143 (151)
T ss_dssp CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC----
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhhcc
Confidence 999888 699999999998 9999999999987655443
No 300
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=99.44 E-value=3.7e-13 Score=120.23 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=81.8
Q ss_pred hhhhhhcc---CCCCceeeeeeCC-CCccccchhHhHHHHHhhCCCeEEEEEeCcC--cHHHHHHcCCCcccEEEEEECC
Q 009096 416 LEKFKAAI---SSPGVSLVHFKEA-SSEKCEEISPFVNLLCVRYPYVHFFKVDVEE--SLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 416 ~~~~~~~i---~~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
.+.+.+.+ ...+.+++.||++ ||++|+.+.|.++++++..+++.|+.+|+++ +++++++|||.++||+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g 88 (226)
T 1a8l_A 9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG 88 (226)
T ss_dssp HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence 34444444 2345667999999 9999999999999999877779999999999 9999999999999999999999
Q ss_pred eEE-EEEcCC-CHHHHHHHHHhcC
Q 009096 490 EKL-KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 490 ~~~-~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.. .++.|. +.+++..++....
T Consensus 89 ~~~~~~~~G~~~~~~l~~~l~~~l 112 (226)
T 1a8l_A 89 KDFGVRYFGLPAGHEFAAFLEDIV 112 (226)
T ss_dssp BCCSEEEESCCCTTHHHHHHHHHH
T ss_pred ceeeEEEeccCcHHHHHHHHHHHH
Confidence 875 788898 8888999988754
No 301
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.44 E-value=9.7e-14 Score=147.43 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=85.5
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.|.+.+..+++++|.||++||++|+.+.|.++++++++++ +.|++||+++++.++++|||.++||+++|++|+.+
T Consensus 121 l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 200 (780)
T 3apo_A 121 LERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAA 200 (780)
T ss_dssp CCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSCC
T ss_pred echHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcEe
Confidence 45567888888899999999999999999999999999999976 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.++.|. +.+.|.++|.+.+.+.
T Consensus 201 ~~~~G~~~~~~l~~~l~~~~~~~ 223 (780)
T 3apo_A 201 VKYNGDRSKESLVAFAMQHVRST 223 (780)
T ss_dssp EECCSCSCHHHHHHHHHTTSCCC
T ss_pred eEecCCCCHHHHHHHHHHhchhh
Confidence 999998 9999999999987654
No 302
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=99.43 E-value=5.3e-14 Score=117.09 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=74.5
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhH-hH--HHHHhhCC-CeEEEEEeCcCcHHHHHHc--------CCCcccEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISP-FV--NLLCVRYP-YVHFFKVDVEESLAIAKSE--------GVRTVPTF 483 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p-~l--~~l~~~~~-~~~~~~~d~~~~~~~~~~~--------~v~~~Pt~ 483 (543)
.+.+..+...+++++|+||++||++|+.|.| .+ .++++.+. ++.+++||.++.++++..| ||.++||+
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~ 108 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN 108 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce
Confidence 4566677777999999999999999999999 33 45655553 5999999999999999998 99999999
Q ss_pred EEEE-CCeEEEEEcCC------CHHHHHHHHHh
Q 009096 484 KIYK-NGEKLKEMINP------SHQFLEDSANL 509 (543)
Q Consensus 484 ~~~~-~g~~~~~~~g~------~~~~~~~~~~~ 509 (543)
++++ +|+++...... +.+.+.++|++
T Consensus 109 v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~ 141 (173)
T 3ira_A 109 IIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPR 141 (173)
T ss_dssp EEECTTSCEEEEESSCCSSCBTTBCCHHHHHHH
T ss_pred eeECCCCCceeeeeeCCCCcCCCCCCHHHHHHH
Confidence 9997 99998864322 23456666654
No 303
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=99.43 E-value=3.3e-14 Score=136.61 Aligned_cols=88 Identities=11% Similarity=0.169 Sum_probs=72.8
Q ss_pred CeEEeehhhhhhhccCCC--CceeeeeeCCCCccccchhHhHHHHHhhCC---------CeEEEEEeCcCcHHHHHHcCC
Q 009096 409 EVEEISSLEKFKAAISSP--GVSLVHFKEASSEKCEEISPFVNLLCVRYP---------YVHFFKVDVEESLAIAKSEGV 477 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~--~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---------~~~~~~~d~~~~~~~~~~~~v 477 (543)
.+..+ +.+.|++.+... ++++|+||++||++|+.+.|.+++++++++ .+.|++||++++++++++|+|
T Consensus 24 ~V~~L-t~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V 102 (470)
T 3qcp_A 24 SVVDL-SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDI 102 (470)
T ss_dssp TEEEC-SCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTC
T ss_pred CcEEC-CHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCC
Confidence 34444 446677777543 689999999999999999999999999996 399999999999999999999
Q ss_pred CcccEEEEEECCe--EEEEEcC
Q 009096 478 RTVPTFKIYKNGE--KLKEMIN 497 (543)
Q Consensus 478 ~~~Pt~~~~~~g~--~~~~~~g 497 (543)
.++||+++|++|. .+.++.|
T Consensus 103 ~~~PTlilf~~gg~~~~~~y~G 124 (470)
T 3qcp_A 103 NFVPRLFFFYPRDSCRSNEECG 124 (470)
T ss_dssp CSSCEEEEEEESSCCCTTSCCC
T ss_pred CccCeEEEEECCCceEEEEeeC
Confidence 9999999997543 3444555
No 304
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.43 E-value=8.6e-15 Score=122.91 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=80.1
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHH-HHHHcCC--CcccEEEEE-ECCeE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLA-IAKSEGV--RTVPTFKIY-KNGEK 491 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~-~~~~~~v--~~~Pt~~~~-~~g~~ 491 (543)
+.+......+++++|+||++||++|+.+.|.|.++.+.++ ++.|+.||++..+. ++..|++ .++||+++| ++|++
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~ 116 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV 116 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCE
Confidence 4555556678999999999999999999999998766554 48888899988776 8889998 669999999 79999
Q ss_pred EEEEcC----------C-CHHHHHHHHHhcC
Q 009096 492 LKEMIN----------P-SHQFLEDSANLAP 511 (543)
Q Consensus 492 ~~~~~g----------~-~~~~~~~~~~~~~ 511 (543)
+.++.| . +.++|.+.|++.+
T Consensus 117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l 147 (164)
T 1sen_A 117 HPEIINENGNPSYKYFYVSAEQVVQGMKEAQ 147 (164)
T ss_dssp CTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred EEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence 999888 3 7899999998764
No 305
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=99.42 E-value=1.8e-13 Score=115.54 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=77.9
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEe----------------------------CcCcHHHHH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVD----------------------------VEESLAIAK 473 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d----------------------------~~~~~~~~~ 473 (543)
..++++++.||++||++|+.+.|.+.++.+++ +++.|+.|+ .+....+++
T Consensus 36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 115 (164)
T 2h30_A 36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ 115 (164)
T ss_dssp CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence 35689999999999999999999999999886 346665554 344568999
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.|+|.++||++++ ++|+++.++.|. +.+++.++|++.+...
T Consensus 116 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~ 158 (164)
T 2h30_A 116 NLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNADL 158 (164)
T ss_dssp HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred HcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999 699999999998 9999999999987653
No 306
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.42 E-value=4.6e-12 Score=101.95 Aligned_cols=118 Identities=8% Similarity=-0.065 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN--- 311 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--- 311 (543)
++.+|..+...|++++|+..|++++..+|+++..... ++.+|.++...|++++|+..|+++++.+|++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~---------~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNA---------LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 3455899999999999999999999999998732211 2347999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+.+++.+|.++..+|++++|+..|++++...|+++.+...+..+....++
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999887766665544443
No 307
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=99.42 E-value=6.3e-13 Score=110.59 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=81.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcH-----------------------HHHHHcCCCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESL-----------------------AIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~-----------------------~~~~~~~v~~ 479 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++... .+++.|+|.+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 108 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING 108 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence 467999999999999999999999999999964 999999988764 7899999999
Q ss_pred ccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 480 VPTFKIYK-NGEKLKEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 480 ~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
+||++++. +|+++.+..|. +.++++++|++..+...
T Consensus 109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~ 146 (152)
T 2lja_A 109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEG 146 (152)
T ss_dssp SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence 99999997 99999999998 99999999998765543
No 308
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=99.42 E-value=4e-13 Score=111.57 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=78.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC------------------------cHHHHHHcC--
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE------------------------SLAIAKSEG-- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~------------------------~~~~~~~~~-- 476 (543)
.++++++.||++||++|+.+.|.+.++.+++. ++.|+.|++|. ...+++.||
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 46899999999999999999999999999984 49999999873 355788999
Q ss_pred CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|.++||++++ ++|+++.++.|. +.+++.++|++....
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~ 141 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK 141 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999998888 599999999998 999999999987654
No 309
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=7.8e-13 Score=130.91 Aligned_cols=230 Identities=9% Similarity=-0.015 Sum_probs=151.9
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHL 161 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 161 (543)
|.+....|..+...|+|++|++.|.++++..|.........+......+..+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 55 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE---------------------------- 55 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH----------------------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH----------------------------
Confidence 4556777888888999999999999999888876543222221111111111
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
.++..+|.+|...|++++|++.+.+++...+..............++.+
T Consensus 56 -------------------------------~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (434)
T 4b4t_Q 56 -------------------------------TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKF 104 (434)
T ss_dssp -------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 1122334444444444444444444444333333322222233444777
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCChhHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------DSYNSILY 315 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~ 315 (543)
+...|++++|+..+++++...+...... ..+..+..+|.++...|+|++|+..+++++.. .+....++
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVF------LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCS------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 7778888888888888875432211000 00111345899999999999999999998765 23346789
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQP---NY----TKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+|.+|...|++++|...+++++...+ +. ...+..+|.++...|++++|..+|.++++..
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987642 22 2567788999999999999999999998753
No 310
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=99.42 E-value=4e-13 Score=112.09 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=80.8
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------cCcHHHHHHcCCCc
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV---------------------------EESLAIAKSEGVRT 479 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~---------------------------~~~~~~~~~~~v~~ 479 (543)
+++++.||++||++|+.+.|.+.++.+++ ++.|+.|++ +....+++.|||.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 89999999999999999999999999999 999999999 46778999999999
Q ss_pred ccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 480 VPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 480 ~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
+|+++++ ++|+++.+..|. +.+++++.|+++...+..
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence 9998888 699999999998 999999999999876544
No 311
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=2.6e-12 Score=123.40 Aligned_cols=137 Identities=13% Similarity=0.042 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH----HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA----SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 307 (543)
...+..+|..+...|++++|+..|+++++..+..+... ..-........+.++|.++..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34567779999999999999999999998433211000 00000011223466899999999999999999999999
Q ss_pred CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888653
No 312
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.42 E-value=2.2e-10 Score=114.19 Aligned_cols=334 Identities=9% Similarity=-0.012 Sum_probs=195.3
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC-HHHHHHHHHHHHhc---CCCChhHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR-LTEAVSDCEEAVRL---DPGYNRAHQ 120 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~ 120 (543)
-..+...+..+...+-.|+++.+..+|++++...| +...|..........++ .+.....|+.++.. +|.+...|.
T Consensus 11 i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34677788888888888999999999999999888 77788887777777663 45567788888874 778888998
Q ss_pred HHHHHHH----HhCCHHHHHHHhcCCCCCCChHH---HhHHHHHHHHHH----HHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 121 RLASLYF----RLGQVENARHHLCFPGHHPDPNE---LLKLQSFEKHLN----RCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 121 ~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
.....+. ..++.+.+...|++++..|.... +..........+ ........+.+..|...+..+....+.
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 8887754 35678889999999988332211 111111100000 000001112222333333333322221
Q ss_pred CCHHHHHHHHHHHHHccC---------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 190 SSPQLVACKAEAHLKLHQ---------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
.....|...... ..++ .+.....|++++...|..+..+..+ +..+...|+.++|...|++++.
T Consensus 170 ~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~y------a~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 170 WSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFY------SEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp CSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHh
Confidence 112222221111 1111 1223344555544444443222222 4444445555555555555555
Q ss_pred cCCCcHHHHHHHHhHH----------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 261 LDYSNVEIASVLTNVK----------------------------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 261 ~~p~~~~~~~~l~~~~----------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
. |.+...+..+.... ....+...+....+.+..+.|...|.++ ...+...
T Consensus 242 ~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~ 319 (493)
T 2uy1_A 242 M-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGP 319 (493)
T ss_dssp H-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCH
T ss_pred C-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCCh
Confidence 5 55443332221110 0011233444555677899999999999 4333345
Q ss_pred hHHhHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMG-LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 313 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.+|...|.+....+ +.+.|...|+.+++..|+.++.|...+......|+.+.|...|+++ +....++........
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 67776677766666 5999999999999999998888888888888899999999999987 345566655554444
Q ss_pred HH
Q 009096 392 AL 393 (543)
Q Consensus 392 ~l 393 (543)
..
T Consensus 396 ~~ 397 (493)
T 2uy1_A 396 MV 397 (493)
T ss_dssp HH
T ss_pred HC
Confidence 43
No 313
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=3.9e-12 Score=111.36 Aligned_cols=164 Identities=10% Similarity=-0.024 Sum_probs=117.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 009096 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR 247 (543)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 247 (543)
...|++++|...++.... +|.....++..+|.++...|++++|+..+++++...............+..+|.++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999985554433 5656688899999999999999999999999988666555555556678888999999999
Q ss_pred hHHHHHHHHHHhhc---CCCcH-HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--C----hhHHhH
Q 009096 248 FENAVSSAEKAGLL---DYSNV-EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY--N----SILYCN 317 (543)
Q Consensus 248 ~~~A~~~~~~al~~---~p~~~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~ 317 (543)
+++|+..+++++.+ .++++ ..... +..+|.++...|++++|+..+++++...+. + ..++.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASAN---------AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHH---------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999877 44333 22111 244788888888888888888887765321 1 233456
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhh
Q 009096 318 RAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+|.++...|++++|+..+++++++
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH
Confidence 666666666666666666666655
No 314
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=99.40 E-value=6.3e-13 Score=112.32 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHc---------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSE--------------------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~--------------------------- 475 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++...+...+|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 468999999999999999999999999999965 999999999877766666
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
+|.++||++++ ++|+++.++.|. +.+++.++|++++.....
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 155 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA 155 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence 99999998888 699999999998 999999999998765433
No 315
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=1.4e-12 Score=102.95 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=82.9
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
..|++++|+..|+++++..++++.....+ ..+|.++...|++++|+..|+++++.+|+++.+++++|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~---------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECY---------LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 46899999999999999953333322222 458999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
.+|++++|+..|++++...|+++.+....
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999998765433
No 316
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=99.40 E-value=8.4e-13 Score=110.62 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=78.5
Q ss_pred CCCceeeeeeCCCCccccch-hHhHHHHHhhCC--CeEEEEEeCc----------------------------CcH----
Q 009096 425 SPGVSLVHFKEASSEKCEEI-SPFVNLLCVRYP--YVHFFKVDVE----------------------------ESL---- 469 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~~--~~~~~~~d~~----------------------------~~~---- 469 (543)
.++++++.||++||++|+.. .|.+.++.++++ ++.|+.|+++ ...
T Consensus 27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM 106 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence 46899999999999999996 999999999997 4999998863 122
Q ss_pred -HHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 470 -AIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 470 -~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+++.|||.++||++++ ++|+++.++.|. +.+++.+.|++++...
T Consensus 107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence 58999999999998888 599999999998 9999999999987543
No 317
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=99.40 E-value=4.2e-13 Score=134.32 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=87.6
Q ss_pred ehhhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 414 SSLEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 414 ~~~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
.+...+.+.+. .+++++|.||++||++|+.+.|.++++++.++ ++.|+++|++.+ +++.+|+|.++||+++|++|
T Consensus 357 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~ 435 (481)
T 3f8u_A 357 VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPAN 435 (481)
T ss_dssp ECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTT
T ss_pred ecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCC
Confidence 34455666554 48899999999999999999999999999885 499999999998 78999999999999999988
Q ss_pred eE--EEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 490 EK--LKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 490 ~~--~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
.. +.++.|. +.+++.++|++.......
T Consensus 436 ~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~ 465 (481)
T 3f8u_A 436 KKLNPKKYEGGRELSDFISYLQREATNPPV 465 (481)
T ss_dssp CTTSCEECCSCCSHHHHHHHHHHHCSSCCC
T ss_pred CeEeeeEeCCCCCHHHHHHHHHHhcCCccc
Confidence 76 6788898 999999999998765433
No 318
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=99.39 E-value=5.2e-13 Score=128.34 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=84.3
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC---eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~---~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..++. +.+...+ ..+++++|.||++||++|+.+.|.+++++..+++ +.++.+|++.+. +.+|+|.++||+++
T Consensus 251 v~~l~~-~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~ 327 (361)
T 3uem_A 251 VKVLVG-KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKF 327 (361)
T ss_dssp SEEECT-TTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEE
T ss_pred cEEeec-CchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEE
Confidence 444444 4555544 6788999999999999999999999999999864 899999999886 68999999999999
Q ss_pred EECC--eEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 486 YKNG--EKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g--~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|.+| +.+.++.|. +.+.|.++|++..+
T Consensus 328 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 357 (361)
T 3uem_A 328 FPASADRTVIDYNGERTLDGFKKFLESGGQ 357 (361)
T ss_dssp ECSSSSCCCEECCSCSSHHHHHHHHTTTSC
T ss_pred EECCCCcceeEecCCCCHHHHHHHHHhcCC
Confidence 9654 677888898 99999999998654
No 319
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.39 E-value=2e-12 Score=104.15 Aligned_cols=106 Identities=30% Similarity=0.450 Sum_probs=97.9
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hh
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-------NR 117 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 117 (543)
|..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH-HPDPNE 150 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~ 150 (543)
+++.+|.++...|++++|+..|++++. .+++..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 114 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999887 444443
No 320
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=99.38 E-value=1e-12 Score=110.40 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=78.1
Q ss_pred CCCceeeeeeCCCCccccc-hhHhHHHHHhhCCC--eEEEEEeCc----------------------------CcHH---
Q 009096 425 SPGVSLVHFKEASSEKCEE-ISPFVNLLCVRYPY--VHFFKVDVE----------------------------ESLA--- 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~-~~p~l~~l~~~~~~--~~~~~~d~~----------------------------~~~~--- 470 (543)
.++++++.||++||++|+. +.|.+.++.+++++ +.|+.|+++ ....
T Consensus 29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (160)
T 3lor_A 29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR 108 (160)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence 4689999999999999999 69999999999974 999999862 2333
Q ss_pred ---HHHHcCCCcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 471 ---IAKSEGVRTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 471 ---~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
+++.|||.++||++++. +|+++.++.|. +.+++.+.|++++..
T Consensus 109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 89999999999999995 99999999998 999999999988754
No 321
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=99.38 E-value=1.3e-12 Score=108.60 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=79.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcH----------------------HHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESL----------------------AIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~----------------------~~~~~~~v~~~ 480 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++... .+++.|+|.++
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 106 (152)
T 3gl3_A 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM 106 (152)
T ss_dssp TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence 467999999999999999999999999999965 899999998655 68899999999
Q ss_pred cEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcCCCCCCCC
Q 009096 481 PTFKIY-KNGEKLKEMINP---SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~ 518 (543)
||++++ ++|+++.+..|. +.+++.++|++.........
T Consensus 107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~~~ 148 (152)
T 3gl3_A 107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEGHH 148 (152)
T ss_dssp SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC------
T ss_pred CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccccc
Confidence 998888 699999999996 55899999999877655443
No 322
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=8.9e-13 Score=102.99 Aligned_cols=97 Identities=27% Similarity=0.400 Sum_probs=91.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY------NRAHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (543)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
.+|.++..+|++++|+..++++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHhHhhhHhHHHHhH
Confidence 99999999999988888877654
No 323
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=99.38 E-value=1.1e-12 Score=99.48 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc--CcHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE--ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
..+.++.|+++||++|+.+.|.|+++.. ++.|..+|++ ++++++.+|| .++|++ +.||+.+ .+.|+++++|
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~~l 87 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTSKL 87 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHHHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCCHHHH
Confidence 4578899999999999999999987653 3899999999 8899999999 999986 5689876 5667799999
Q ss_pred HHHHHhcCC
Q 009096 504 EDSANLAPS 512 (543)
Q Consensus 504 ~~~~~~~~~ 512 (543)
+++|+++..
T Consensus 88 ~~~l~~~~~ 96 (100)
T 1wjk_A 88 EKQLRKLSG 96 (100)
T ss_dssp HHHHHSSSC
T ss_pred HHHHHHHHh
Confidence 999998764
No 324
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.38 E-value=3.8e-12 Score=106.77 Aligned_cols=141 Identities=14% Similarity=0.003 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
...+..+|.++...|++++|+..+++++...+....... ....+..+|.++...|++++|+.+++++++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 345677799999999999999999999977654322110 11224568999999999999999999999875442
Q ss_pred ------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 312 ------SILYCNRAICWSKMGLWENSIEDCNVALRIQPN------YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 312 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
..++.++|.++...|++++|+..+++++.+.+. ...++..+|.++...|++++|+.++++++++...
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999987432 2467899999999999999999999999987654
No 325
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=99.37 E-value=1.4e-12 Score=108.39 Aligned_cols=89 Identities=12% Similarity=0.148 Sum_probs=76.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
.++++++.||++||++|+...|.+.++.+++++ +.|+.|+++. ...+++.|||
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence 467999999999999999999999999998865 9999999987 5789999999
Q ss_pred CcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcCCCCC
Q 009096 478 RTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAPSPVY 515 (543)
Q Consensus 478 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 515 (543)
.++||++++ ++|+++.+.. +.+++++.|++++....
T Consensus 108 ~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l~~~~~ 144 (152)
T 2lrn_A 108 VGFPHIILVDPEGKIVAKEL--RGDDLYNTVEKFVNGAK 144 (152)
T ss_dssp CSSCEEEEECTTSEEEEECC--CTTHHHHHHHHHHTSSS
T ss_pred CcCCeEEEECCCCeEEEeeC--CHHHHHHHHHHHHhhcc
Confidence 999999998 6999998863 45678888887655443
No 326
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.37 E-value=8.1e-12 Score=98.24 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 295 SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--ChHHHHHHHHHHHHHHhh
Q 009096 375 ELPG--DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 375 ~~p~--~~~~~~~l~~~~~~l~~~ 396 (543)
+.|+ +......+......+++.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhccc
Confidence 9885 445555555555555443
No 327
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=99.36 E-value=3.3e-13 Score=135.83 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=85.6
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+..++. +.|... ...+++++|+||++||++|+.+.|.+++++++++ ++.++++|++.+... . |+|.++||++
T Consensus 360 v~~l~~-~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~ 436 (504)
T 2b5e_A 360 VFQLVG-KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIV 436 (504)
T ss_dssp EEEECT-TTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEE
T ss_pred ceeccc-ccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEE
Confidence 444444 455554 4568899999999999999999999999999876 699999999987654 4 9999999999
Q ss_pred EEECCeE--EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 485 IYKNGEK--LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 485 ~~~~g~~--~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+|++|+. +.++.|. +.+++.++|++.....
T Consensus 437 ~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~~ 469 (504)
T 2b5e_A 437 LYPGGKKSESVVYQGSRSLDSLFDFIKENGHFD 469 (504)
T ss_dssp EECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTC
T ss_pred EEeCCceecceEecCCCCHHHHHHHHHhcCCCC
Confidence 9999977 7788898 9999999999986554
No 328
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=99.36 E-value=2.3e-12 Score=105.09 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=76.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC----------------------------cCcHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV----------------------------EESLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~----------------------------~~~~~~~~~~ 475 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.++.++. +....+++.|
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY 100 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence 468899999999999999999999999999874 88888842 3456799999
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
||.++||++++ ++|+++.+..|. +.+++.+.|+++
T Consensus 101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 99999999999 699999999998 999999999875
No 329
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=99.34 E-value=3.1e-12 Score=105.80 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC-CC--eEEEEEeCcCc-------------------------HHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PY--VHFFKVDVEES-------------------------LAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~--~~~~~~d~~~~-------------------------~~~~~~~~ 476 (543)
.++++++.||++||++|+.+.|.+.++.+++ ++ +.|+.|+++.. ..++..||
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 4689999999999999999999999999999 54 89999998863 48999999
Q ss_pred CCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
|.++||++++ ++|+++.+.. +.+++.+.|++++.
T Consensus 112 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKILARDI--QGEALTGKLKELLK 146 (148)
T ss_dssp CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHC-
T ss_pred CCCcCEEEEECCCCeEEEecC--CHHHHHHHHHHHHc
Confidence 9999999999 6999988765 88899999988753
No 330
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=99.33 E-value=2.1e-12 Score=106.88 Aligned_cols=85 Identities=9% Similarity=0.169 Sum_probs=74.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHH-------------------------HHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLA-------------------------IAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~-------------------------~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++...+ +++.|+|
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 467999999999999999999999999999865 9999999997766 9999999
Q ss_pred CcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 478 RTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 478 ~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
.++||++++ ++|+++.+..|. +.+++.+.+.+
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 999999999 699999998888 66666665554
No 331
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=99.33 E-value=5.5e-12 Score=105.52 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=76.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------cHHHHHHcCCCcccEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------SLAIAKSEGVRTVPTF 483 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------~~~~~~~~~v~~~Pt~ 483 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.|+.|+++. ...+++.|+|.++|++
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 119 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT 119 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence 46799999999999999999999999999997 59999999987 6789999999999997
Q ss_pred EEE-ECCeEEEEEcCC---CHHHHHHHHHhcCC
Q 009096 484 KIY-KNGEKLKEMINP---SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~ 512 (543)
+++ ++|+++.++.|. +.+++.+.+++...
T Consensus 120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~ 152 (158)
T 3hdc_A 120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEG 152 (158)
T ss_dssp EEECTTSBEEEEEESCCCTTSHHHHHHHHTTC-
T ss_pred EEEcCCCCEEEEEeCCCccchHHHHHHHHhhcc
Confidence 777 699999999997 56667766665443
No 332
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.32 E-value=2.6e-12 Score=106.92 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=80.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeC-----------------------cCcHHHHHHcCCCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDV-----------------------EESLAIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~-----------------------~~~~~~~~~~~v~~ 479 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+. +....+++.|||.+
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 467999999999999999999999999999864 88876653 45668999999999
Q ss_pred ccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 480 VPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 480 ~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
+||++++ ++|+++.++.|. +.+++.+.|++++....+..
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~~~ 147 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAEG 147 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSSCC
T ss_pred cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhhcc
Confidence 9999998 699999999998 99999999998876554443
No 333
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=99.32 E-value=2e-12 Score=109.57 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=73.6
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-----------------------cCcHHHHHHcCCCcc
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-----------------------EESLAIAKSEGVRTV 480 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-----------------------~~~~~~~~~~~v~~~ 480 (543)
..++++++.||++||++|+.+.|.+.++.++ ++.|+.|++ +....++..|||.++
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 126 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 126 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSS
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcccc
Confidence 4678999999999999999999999999887 788888873 456679999999999
Q ss_pred cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 481 PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|+++++ ++|+++.+..|. +.+++.+.|++.+
T Consensus 127 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 159 (168)
T 2b1k_A 127 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW 159 (168)
T ss_dssp SEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred CEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence 965555 699999999998 9999988888654
No 334
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.32 E-value=2e-12 Score=105.38 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=78.3
Q ss_pred CCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcC--cHHHHHHcCCCcccEEEEEE-C-CeEEEEE
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEE--SLAIAKSEGVRTVPTFKIYK-N-GEKLKEM 495 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~-~-g~~~~~~ 495 (543)
..+++++|+|+++||..|+.|...+ .++.+.+ .++.++++|++. ...+.+.|+|.++||++++. + |+++.++
T Consensus 40 ~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~ 119 (153)
T 2dlx_A 40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 119 (153)
T ss_dssp HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEE
T ss_pred HcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeec
Confidence 4588999999999999999997543 3343333 368999999975 45689999999999999996 5 8888887
Q ss_pred cCCCHHHHHHHHHhcCCCCCCCCccccCCCC
Q 009096 496 INPSHQFLEDSANLAPSPVYKLPLVTLACSP 526 (543)
Q Consensus 496 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
.|.+++++.+.|++.+.......+-++++.|
T Consensus 120 ~g~~~~~fl~~L~~~l~~~~~~~~~~~~~~~ 150 (153)
T 2dlx_A 120 HQLDVSSFLDQVTGFLGEHGQLDGLSSSSGP 150 (153)
T ss_dssp SSCCHHHHHHHHHHHHHHTCSCSSCCCCCSC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 7779999999998877555444443333333
No 335
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.31 E-value=2.4e-12 Score=136.71 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=88.9
Q ss_pred eEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..++. +.+. .+...+++++|.||++||++|+.+.|.++++++++. ++.|+.+|+++++.++++|||.++||+++|+
T Consensus 659 v~~l~~-~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 737 (780)
T 3apo_A 659 SIDLTP-QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQ 737 (780)
T ss_dssp SEEECH-HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cccCCH-HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEc
Confidence 334443 4454 455678899999999999999999999999999985 5999999999999999999999999999999
Q ss_pred CCeEEEEEcC----C-CHHHHHHHHHhcCCC
Q 009096 488 NGEKLKEMIN----P-SHQFLEDSANLAPSP 513 (543)
Q Consensus 488 ~g~~~~~~~g----~-~~~~~~~~~~~~~~~ 513 (543)
+|+++.++.| . +.++|.++|++.+..
T Consensus 738 ~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~ 768 (780)
T 3apo_A 738 YERAKKSIWEEQINSRDAKTIAALIYGKLET 768 (780)
T ss_dssp EETTTTEEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred CCCccccccCcccCCcCHHHHHHHHHHHHHH
Confidence 9998887777 4 999999999998753
No 336
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.3e-12 Score=101.97 Aligned_cols=92 Identities=24% Similarity=0.428 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRA 353 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la 353 (543)
.+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++.+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 345678888888888888888888888888888888888888888888888888888888888888 78888888
Q ss_pred HHHHHccCHHHHHHHHHH
Q 009096 354 VSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~ 371 (543)
.++..+|++++|+..+++
T Consensus 86 ~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 86 LAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHhHhhhHhHHHH
Confidence 888888877777665543
No 337
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=99.31 E-value=8.5e-12 Score=105.26 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc------------------Cc------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE------------------ES------------------ 468 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~------------------~~------------------ 468 (543)
.++++++.||++||++|+.+.|.+.++.++++++.|+.|+++ ..
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM 115 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence 468999999999999999999999999999999999999988 44
Q ss_pred ----HHHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 469 ----LAIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 469 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
..+++.|+|.++||++++ ++|+++. .... +.+++++.|++++.
T Consensus 116 ~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~~ 164 (165)
T 3ha9_A 116 VMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQG 164 (165)
T ss_dssp EECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC--
T ss_pred EeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHhc
Confidence 278999999999999999 5999988 3334 79999999998764
No 338
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=99.30 E-value=3.1e-12 Score=114.37 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=78.6
Q ss_pred hhhhhcc--CCCCceeeeee-----CCCCccccchhHhHHHHHhhC---CCeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 417 EKFKAAI--SSPGVSLVHFK-----EASSEKCEEISPFVNLLCVRY---PYVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 417 ~~~~~~i--~~~~~~lv~f~-----~~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+.+.+.+ ...+++++.|| ++||++|+.+.|.++++++++ +.+.|+++|++++++++++|||+++||+++|
T Consensus 9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~ 88 (229)
T 2ywm_A 9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE 88 (229)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence 3444444 33455655555 889999999999999997766 3499999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+...++.|. +.+++..++....
T Consensus 89 ~~~~~~~~~~G~~~~~~l~~~~~~~~ 114 (229)
T 2ywm_A 89 GDKDYGIRYIGLPAGLEFTTLINGIF 114 (229)
T ss_dssp SSSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred CCCcccceecCCccHHHHHHHHHHHH
Confidence 988888899998 8899999988754
No 339
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.30 E-value=3.7e-12 Score=106.43 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=74.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-----------------------CcHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-----------------------ESLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-----------------------~~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+.+.|.+.++.++ +++.|+.|+++ ....+++.|+|.++|
T Consensus 41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 119 (156)
T 1kng_A 41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP 119 (156)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccC
Confidence 468999999999999999999999999888 66888888864 345789999999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|++++ ++|+++.++.|. +.+++.++|++++
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l 151 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQM 151 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 76666 699999999998 9999999888754
No 340
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.29 E-value=2.7e-11 Score=90.49 Aligned_cols=86 Identities=30% Similarity=0.462 Sum_probs=82.1
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
|.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 009096 125 LYFRLG 130 (543)
Q Consensus 125 ~~~~~g 130 (543)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998765
No 341
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=99.29 E-value=1.1e-11 Score=103.26 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=76.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCc-----------------------HHHHHHcCCCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEES-----------------------LAIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~-----------------------~~~~~~~~v~~ 479 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++.. ..+++.|+|.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 468999999999999999999999999999965 89999998875 34889999999
Q ss_pred ccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcCCCCCCC
Q 009096 480 VPTFKIY-KNGEKLKEMINP---SHQFLEDSANLAPSPVYKL 517 (543)
Q Consensus 480 ~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~~~~~~ 517 (543)
+|+++++ ++|+++.++.|. +.+++.++|+++.......
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~~~ 148 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAREG 148 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-------
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhhhc
Confidence 9976666 699999999986 6779999999987654433
No 342
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=99.28 E-value=9.1e-12 Score=102.10 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHH---HHhhC--CCeEEEEEeCcCcHH------------------------HHHHcC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNL---LCVRY--PYVHFFKVDVEESLA------------------------IAKSEG 476 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~---l~~~~--~~~~~~~~d~~~~~~------------------------~~~~~~ 476 (543)
++++++.||++||++|+...|.+.+ +.+++ .++.++.|+.+...+ +++.|+
T Consensus 31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (142)
T 3eur_A 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD 110 (142)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence 5899999999999999999999999 88888 459999999987643 478899
Q ss_pred CCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHh
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
|.++||++++ ++|+++.+..| .++++++|++
T Consensus 111 v~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~e 142 (142)
T 3eur_A 111 LRAIPTLYLLDKNKTVLLKDAT--LQKVEQYLAE 142 (142)
T ss_dssp CTTCSEEEEECTTCBEEEEEEC--HHHHHHHHHC
T ss_pred CCcCCeEEEECCCCcEEecCCC--HHHHHHHHhC
Confidence 9999998888 59999988654 7888888864
No 343
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.27 E-value=9.5e-12 Score=104.28 Aligned_cols=146 Identities=14% Similarity=0.007 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
.++..+|.++...|++++|+..+++++...+...........+..+|.++...|++++|+..+++++...+......
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 34555666666666666666666666665554444444445667779999999999999999999987654321111
Q ss_pred HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS------YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
.....+..+|.++...|++++|+..++++++..+ ....++..+|.++...|++++|+..+++++++...
T Consensus 87 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 ---VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 0112245689999999999999999999997632 22568899999999999999999999999987544
No 344
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=99.27 E-value=1.1e-11 Score=102.69 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=71.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHH-----------------------HHHHcCCCcc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLA-----------------------IAKSEGVRTV 480 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~-----------------------~~~~~~v~~~ 480 (543)
++++++.||++||++|+...|.+.++.+++++ +.|+.|+++...+ +++.|||.++
T Consensus 35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~ 114 (152)
T 2lrt_A 35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL 114 (152)
T ss_dssp GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence 57999999999999999999999999998864 9999999987654 8899999999
Q ss_pred cEEEEEE-CCeEEEEEcCC-CHHHHHHHH
Q 009096 481 PTFKIYK-NGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 481 Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~ 507 (543)
||++++. +|+++.+..|. +.++....+
T Consensus 115 P~~~lid~~G~i~~~~~g~~~~e~~~~~~ 143 (152)
T 2lrt_A 115 PSVFLVNRNNELSARGENIKDLDEAIKKL 143 (152)
T ss_dssp SEEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred ceEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence 9999995 99999999998 655554443
No 345
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=99.26 E-value=1.2e-11 Score=106.88 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=76.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC-----------------------------cCcHHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV-----------------------------EESLAIAKS 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~-----------------------------~~~~~~~~~ 474 (543)
.++++++.||++||++|+...|.+.++.+++++ +.|+.|++ |....+++.
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 111 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 111 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 358999999999999999999999999999977 99999988 345679999
Q ss_pred cCCCcccEEEEE-ECCeEEEE--------EcCC-CHHHHHHHHHhcCCCC
Q 009096 475 EGVRTVPTFKIY-KNGEKLKE--------MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 475 ~~v~~~Pt~~~~-~~g~~~~~--------~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|+|.++||++++ ++|+++.+ ..|. +.+++++.|++++...
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 112 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred cCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence 999999999888 69999887 2233 6789999999876543
No 346
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=99.26 E-value=6.2e-12 Score=109.50 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=76.6
Q ss_pred CC-ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc-----------------------------CcHHHHH
Q 009096 426 PG-VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE-----------------------------ESLAIAK 473 (543)
Q Consensus 426 ~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~-----------------------------~~~~~~~ 473 (543)
++ ++++.||++||++|+...|.+.++.++++ ++.|+.|+++ ....+++
T Consensus 45 gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 124 (196)
T 2ywi_A 45 SDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAK 124 (196)
T ss_dssp CSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence 44 59999999999999999999999999886 4999999983 4567999
Q ss_pred HcCCCcccEEEEE-ECCeEEEE---------EcCC-CHHHHHHHHHhcCCCC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKE---------MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~---------~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.|+|.++||++++ ++|+++.+ +.|. +.+++++.|++++...
T Consensus 125 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 125 AYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp HHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred HhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 9999999999888 49999988 4577 8999999999886543
No 347
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1.6e-11 Score=101.71 Aligned_cols=85 Identities=12% Similarity=0.230 Sum_probs=74.1
Q ss_pred CCCceeeeeeCCCCcc--ccchhHhHHHHHhhC---CCeEEEEEeCcCcH-------------------------HHHHH
Q 009096 425 SPGVSLVHFKEASSEK--CEEISPFVNLLCVRY---PYVHFFKVDVEESL-------------------------AIAKS 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~--c~~~~p~l~~l~~~~---~~~~~~~~d~~~~~-------------------------~~~~~ 474 (543)
.++++++.||++||++ |+...|.+.++.+++ +++.|+.|++|..+ .+++.
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 111 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ 111 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence 4679999999999999 999999999999998 45999999988654 79999
Q ss_pred cCCCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 475 EGVRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 475 ~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|||.++|+++++ ++|+++.+.. +.+++++.|++++
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll 147 (150)
T 3fw2_A 112 YSIYKIPANILLSSDGKILAKNL--RGEELKKKIENIV 147 (150)
T ss_dssp TTCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHH
T ss_pred cCCCccCeEEEECCCCEEEEccC--CHHHHHHHHHHHH
Confidence 999999999999 6999998864 7788888887653
No 348
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=99.25 E-value=1.2e-11 Score=101.35 Aligned_cols=85 Identities=11% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHH---HHhhCC--CeEEEEEeCcCcHHH------------------------HHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNL---LCVRYP--YVHFFKVDVEESLAI------------------------AKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~---l~~~~~--~~~~~~~d~~~~~~~------------------------~~~~ 475 (543)
.++++++.||++||++|+...|.+.+ +.++++ ++.|+.|+++...+. ++.|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 46899999999999999999999888 887773 599999999866543 3489
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|.++||++++ ++|+++.+ +.+.++++++|++..
T Consensus 106 ~v~~~P~~~lid~~G~i~~~--~~~~~~l~~~l~~~~ 140 (142)
T 3ewl_A 106 DIRATPTIYLLDGRKRVILK--DTSMEQLIDYLATQA 140 (142)
T ss_dssp CCCSSSEEEEECTTCBEEEC--SCCHHHHHHHHHC--
T ss_pred CCCCCCeEEEECCCCCEEec--CCCHHHHHHHHHHHc
Confidence 99999999999 59998772 448999999998764
No 349
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=99.25 E-value=1.2e-11 Score=105.31 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=73.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-----------------------cCcHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-----------------------EESLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-----------------------~~~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+...|.+.++.++ ++.|+.|++ |....+++.|+|.++|
T Consensus 57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 134 (176)
T 3kh7_A 57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAP 134 (176)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCC
Confidence 468999999999999999999999999887 788888885 3445789999999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++++ ++|+++.+..|. +.+++.+.|++.+
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 166 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY 166 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 77777 599999999998 9988888887654
No 350
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=99.24 E-value=1.1e-11 Score=106.46 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=75.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--e------EEEEEeCcC-cHHHHHHc--------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--V------HFFKVDVEE-SLAIAKSE-------------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~------~~~~~d~~~-~~~~~~~~-------------------- 475 (543)
.++++++.||++||++|+.+.|.|.++.+++++ + .|+.|+++. ..+..++|
T Consensus 58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 137 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137 (183)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence 468999999999999999999999999998854 7 999999998 66666666
Q ss_pred -----CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 476 -----GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 476 -----~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+|.++|+++++ ++|+++.++.|. +.+++.+.|++++.
T Consensus 138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 78999976666 699999999998 99999999988653
No 351
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=99.23 E-value=2.6e-11 Score=99.50 Aligned_cols=83 Identities=10% Similarity=0.061 Sum_probs=70.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCc--------------------------HHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEES--------------------------LAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~--------------------------~~~~~~~~ 476 (543)
.++++++.||++||++|+...|.+.++.++|+ ++.|+.|++|.. ..+++.|+
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD 110 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence 46799999999999999999999999999996 499999988743 25789999
Q ss_pred CCcccEEEEEE-CCeEEEEEcCCCHHHHHHHHHh
Q 009096 477 VRTVPTFKIYK-NGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 477 v~~~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
|.++||++++. +|+++.+. .+.+++++.|++
T Consensus 111 v~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~ 142 (143)
T 4fo5_A 111 LRKGFKNFLINDEGVIIAAN--VTPEKLTEILKA 142 (143)
T ss_dssp GGGCCCEEEECTTSBEEEES--CCHHHHHHHHTC
T ss_pred CCCCCcEEEECCCCEEEEcc--CCHHHHHHHHHh
Confidence 99999888886 99998874 467888888865
No 352
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=99.23 E-value=2.6e-12 Score=115.86 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=61.5
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
.+++||++|||+|++++|.+++++++++.+.+.++|. +++++++++++|+++||+++ ||+. +.|. +.++++++
T Consensus 200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L~~~ 274 (291)
T 3kp9_A 200 GGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEALAVA 274 (291)
T ss_dssp TCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHHHHH
Confidence 4689999999999999999999998875222222233 34789999999999999554 9974 7798 99999999
Q ss_pred HHhc
Q 009096 507 ANLA 510 (543)
Q Consensus 507 ~~~~ 510 (543)
++-.
T Consensus 275 l~~~ 278 (291)
T 3kp9_A 275 SGYP 278 (291)
T ss_dssp TCCC
T ss_pred HCCC
Confidence 8743
No 353
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=99.22 E-value=9.7e-12 Score=90.21 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=56.7
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCc-CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVE-ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLE 504 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~ 504 (543)
++.|+++||++|+.+.|.++++.+++. .+.++.+|.+ +..+++.++||+++||+++ ||+.+. .|. +.++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~l~ 78 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH--INFGAGIDDLK 78 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHHHC
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE--eccCcCHHHhh
Confidence 678999999999999999999988774 3666666665 5788999999999999877 998764 343 666653
No 354
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.22 E-value=2e-11 Score=93.07 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChh-HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSI-LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
.+|..+...|++++|+..|+++++.+|+++. +++++|.++..+|++++|+..|+++++++|++..++.+ +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4688888888888888888888888888888 88888888888888888888888888888888877754 66
Q ss_pred HHHHHHHHHHHHhcCCCCh
Q 009096 362 WSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~ 380 (543)
+.+|+..|+++...+|+++
T Consensus 77 ~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHhccCcccc
Confidence 7788888888887777654
No 355
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=99.21 E-value=5e-12 Score=99.52 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=66.4
Q ss_pred hhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----HHHHHHcCCCcccEEEEEECCeEE
Q 009096 418 KFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----LAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 418 ~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.+. .+++++ ||++||++|+.+.|.|+++..+ +.++.+|.+.. ..+++.|||.++||+ |.||+.+
T Consensus 12 ~~~~~~~-~~~vv~-f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v 84 (116)
T 2e7p_A 12 KAKELAS-SAPVVV-FSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQI 84 (116)
T ss_dssp HHHHHHT-SSSEEE-EECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEE
T ss_pred HHHHHHc-CCCEEE-EECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 3444444 345555 9999999999999999998655 35666666655 579999999999999 6699998
Q ss_pred EEEcCC----CHHHHHHHHHhc
Q 009096 493 KEMINP----SHQFLEDSANLA 510 (543)
Q Consensus 493 ~~~~g~----~~~~~~~~~~~~ 510 (543)
.++.|. +.++|.++|++.
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~ 106 (116)
T 2e7p_A 85 GGCDTVVEKHQRNELLPLLQDA 106 (116)
T ss_dssp ECHHHHHHHHHTTCHHHHHHHT
T ss_pred CChHHHHHHHhCChHHHHHHHc
Confidence 876654 677899999875
No 356
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=99.20 E-value=2.2e-11 Score=102.37 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=64.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.+++++++||++||++|+.+.|.+.++.++++ ++.|+.|++|.. ..+++.|+|
T Consensus 47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 126 (165)
T 3s9f_A 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV 126 (165)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence 46899999999999999999999999999886 488999988876 689999999
Q ss_pred CcccEEEEEE-C-CeEEEEEc
Q 009096 478 RTVPTFKIYK-N-GEKLKEMI 496 (543)
Q Consensus 478 ~~~Pt~~~~~-~-g~~~~~~~ 496 (543)
.++||+++++ + |+++.+..
T Consensus 127 ~~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 127 ESIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CCCCEEEEEeCCCCEEEeccc
Confidence 9999999997 4 99988754
No 357
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=99.20 E-value=2e-11 Score=100.55 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.++.|+++.. ..++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (146)
T 1o8x_A 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 106 (146)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence 46799999999999999999999999999886 589999988763 478999999
Q ss_pred CcccEEEEEE--CCeEEEEEc
Q 009096 478 RTVPTFKIYK--NGEKLKEMI 496 (543)
Q Consensus 478 ~~~Pt~~~~~--~g~~~~~~~ 496 (543)
.++||+++++ +|+++.+..
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~~ 127 (146)
T 1o8x_A 107 ESIPTLIGVDADSGDVVTTRA 127 (146)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CCCCEEEEEECCCCeEEEecc
Confidence 9999999997 999988653
No 358
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.20 E-value=1.2e-10 Score=88.77 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=69.2
Q ss_pred cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 307 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++++.|.+.+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 4799999999999999999999999999999999999999999999999999999999999999999998754443
No 359
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=99.20 E-value=2.3e-11 Score=108.93 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=83.4
Q ss_pred EeehhhhhhhccCC-CCceeeeeeCCC--CccccchhHhHHHHHhhCCC------eEEEEEeCcCcHHHHHHcCCCcccE
Q 009096 412 EISSLEKFKAAISS-PGVSLVHFKEAS--SEKCEEISPFVNLLCVRYPY------VHFFKVDVEESLAIAKSEGVRTVPT 482 (543)
Q Consensus 412 ~~~~~~~~~~~i~~-~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~~------~~~~~~d~~~~~~~~~~~~v~~~Pt 482 (543)
......++.+.+.. .+++++.||++| |++|+.+.|.++++++.++. +.|+++|++++++++++|||.++||
T Consensus 10 ~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt 89 (243)
T 2hls_A 10 SEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPT 89 (243)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCE
Confidence 34455666666644 679999999999 99999999999999998766 9999999999999999999999999
Q ss_pred EEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 483 FKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 483 ~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++| +| ..++.|. +.+++..++..++
T Consensus 90 ~~i~-~g--~~~~~G~~~~~~l~~fv~~~l 116 (243)
T 2hls_A 90 VAFL-GG--EVRWTGIPAGEEIRALVEVIM 116 (243)
T ss_dssp EEET-TT--TEEEESCCCTTHHHHHHHHHH
T ss_pred EEEE-CC--ceeEcCCCcHHHHHHHHHHHH
Confidence 9999 77 6778888 7788988888754
No 360
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=99.20 E-value=2.2e-11 Score=100.03 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.++.|+++.. ..+++.|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence 46799999999999999999999999999886 589999988863 579999999
Q ss_pred CcccEEEEEE--CCeEEEEEc
Q 009096 478 RTVPTFKIYK--NGEKLKEMI 496 (543)
Q Consensus 478 ~~~Pt~~~~~--~g~~~~~~~ 496 (543)
.++||++++. +|+++.+..
T Consensus 107 ~~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 107 KSIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CCCCEEEEEECCCCcEEeccc
Confidence 9999999996 999888653
No 361
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.20 E-value=2.3e-10 Score=85.35 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+|.++..+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 4555555555555555555555555555555555555555555555555555555555555555555555555443
No 362
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=99.20 E-value=4.5e-11 Score=120.17 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=75.4
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLE 504 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 504 (543)
.+..++.||++||++|+.+.|.+++++..++++.|.++|++++++++++|||+++||+++ ||+.+.+ |. +.++|.
T Consensus 117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l~ 192 (521)
T 1hyu_A 117 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLTEIV 192 (521)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHHH
T ss_pred CCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999977 9998866 88 999999
Q ss_pred HHHHhcC
Q 009096 505 DSANLAP 511 (543)
Q Consensus 505 ~~~~~~~ 511 (543)
++|++..
T Consensus 193 ~~l~~~~ 199 (521)
T 1hyu_A 193 AKVDTGA 199 (521)
T ss_dssp HHHCCSS
T ss_pred HHHhhcc
Confidence 9998753
No 363
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.19 E-value=1.5e-10 Score=90.93 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
++|+..|+++++.+|++..++ ..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLR------------FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHH------------HHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence 468899999999999998875 34799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcc
Q 009096 329 ENSIEDCNVALRIQPN--YTKALLRRAVSNEKLG 360 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 360 (543)
++|+..|++++++.|+ +..+...+...+..++
T Consensus 70 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999999999874 4455555555544443
No 364
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=99.19 E-value=2.3e-11 Score=114.09 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=77.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~ 475 (543)
.+++++|.||++||++|+.+.|.|.++.++++ ++.|+.|+++. ...+++.|
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y 160 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY 160 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence 36799999999999999999999999999986 49999998652 35789999
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+|.++||++++ ++|+++.++.|. +.++++++|++++
T Consensus 161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL 198 (352)
T 2hyx_A 161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198 (352)
T ss_dssp TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999998888 699999999998 9999999998764
No 365
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.19 E-value=3.8e-11 Score=105.95 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=75.3
Q ss_pred CC-ceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCc-----------------------------CcHHHHH
Q 009096 426 PG-VSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVE-----------------------------ESLAIAK 473 (543)
Q Consensus 426 ~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~-----------------------------~~~~~~~ 473 (543)
++ ++++.||++||++|+...|.|.++.+++++ +.|+.|+++ ....+++
T Consensus 58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 137 (218)
T 3u5r_E 58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK 137 (218)
T ss_dssp TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence 45 599999999999999999999999999964 999999983 4568999
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEc---------CC-CHHHHHHHHHhcCCCC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKEMI---------NP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~~~---------g~-~~~~~~~~~~~~~~~~ 514 (543)
.|+|.++|+++++ ++|+++.+.. +. +.+++++.|++++...
T Consensus 138 ~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~ 189 (218)
T 3u5r_E 138 AYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK 189 (218)
T ss_dssp HHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred HcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence 9999999999999 6999987632 23 6899999999987553
No 366
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=99.17 E-value=3.1e-11 Score=99.23 Aligned_cols=71 Identities=14% Similarity=0.271 Sum_probs=63.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.++.|+++.. ..+++.|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (144)
T 1o73_A 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence 46799999999999999999999999999886 588999988763 468999999
Q ss_pred CcccEEEEEE--CCeEEEEE
Q 009096 478 RTVPTFKIYK--NGEKLKEM 495 (543)
Q Consensus 478 ~~~Pt~~~~~--~g~~~~~~ 495 (543)
.++||+++++ +|+++.+.
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 107 ESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCeEEecc
Confidence 9999999998 89988765
No 367
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.16 E-value=1.4e-10 Score=88.42 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=73.7
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHH
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY--NRAHQ 120 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 120 (543)
.+|.++..++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999987653 34444
Q ss_pred HHHHHHHHhC
Q 009096 121 RLASLYFRLG 130 (543)
Q Consensus 121 ~la~~~~~~g 130 (543)
.+..++...+
T Consensus 82 ~l~~~l~~~~ 91 (100)
T 3ma5_A 82 ELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 5555544433
No 368
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=99.15 E-value=4.3e-11 Score=88.13 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=62.1
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcC--CCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEG--VRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
++.|+++||++|+.+.|.|+++..+++++.|..+|++.+ +++++.+| +.++|++ |.||+.+. |. +++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--~~l 75 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--TDF 75 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS--HHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH--HHH
Confidence 677999999999999999999999888999999999765 48999999 9999998 45898764 43 577
Q ss_pred HHHHHh
Q 009096 504 EDSANL 509 (543)
Q Consensus 504 ~~~~~~ 509 (543)
.+++++
T Consensus 76 ~~~~~~ 81 (85)
T 1ego_A 76 AAWVKE 81 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 369
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.15 E-value=1e-10 Score=100.70 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=75.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCc-----HHHHHHcCCC-------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEES-----LAIAKSEGVR------------------- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~-----~~~~~~~~v~------------------- 478 (543)
.++++++.||++||++|+...|.+.++.++++ ++.++.|+++.. ..+.+++++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 138 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 138 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence 46799999999999999999999999999986 599999988764 4566777774
Q ss_pred ----cccEEEEE-ECCeEEEEEcCC-C--HHHHHHHHHhcCCC
Q 009096 479 ----TVPTFKIY-KNGEKLKEMINP-S--HQFLEDSANLAPSP 513 (543)
Q Consensus 479 ----~~Pt~~~~-~~g~~~~~~~g~-~--~~~~~~~~~~~~~~ 513 (543)
++|+++++ ++|+++.++.|. + .+++.+.|++++..
T Consensus 139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK 181 (186)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence 89998888 699999999997 4 78999999987654
No 370
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=4.5e-12 Score=106.20 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=72.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHH-HHhhCC---CeEEEEEeCcCcHHHHHHc----------------------C--
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNL-LCVRYP---YVHFFKVDVEESLAIAKSE----------------------G-- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~-l~~~~~---~~~~~~~d~~~~~~~~~~~----------------------~-- 476 (543)
.++++++.||++||++|+.+.|.+.+ +..++. ++.++.|+++..++..++| +
T Consensus 32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 111 (159)
T 2ls5_A 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR 111 (159)
Confidence 46789999999999999999999998 887775 4889999888654434333 3
Q ss_pred CCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+.++||++++ ++|+++.+..|.+++++.++|+++...
T Consensus 112 ~~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l~~~ 149 (159)
T 2ls5_A 112 DAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQINEM 149 (159)
Confidence 6779998888 799999999898788888888876543
No 371
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=1.8e-08 Score=100.32 Aligned_cols=313 Identities=6% Similarity=-0.089 Sum_probs=203.8
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCC-HHHHHHHHHHHHhc---CCcchhhHHhHHHHHH----HcCCHHHHHHH
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGN-FVEALKLYDKAISM---SPENAAYRSNRAATLT----ALGRLTEAVSD 104 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~ 104 (543)
+...+++++...| +.+.|..........+. .+.....|+.++.. +|.+...|......+. ..++.+.+...
T Consensus 33 ~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~i 111 (493)
T 2uy1_A 33 LESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNG 111 (493)
T ss_dssp HHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHH
Confidence 3444566666666 88898888887777663 45677788998874 7778888887776654 35678899999
Q ss_pred HHHHHhcCCCChhH-HHHHHHHHH-------------HhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhh
Q 009096 105 CEEAVRLDPGYNRA-HQRLASLYF-------------RLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAES 167 (543)
Q Consensus 105 ~~~al~~~p~~~~~-~~~la~~~~-------------~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~ 167 (543)
|++++..-+....- |......-. ....+..|...|..+.. ... ...|......-
T Consensus 112 y~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s---------~~~W~~y~~~E 182 (493)
T 2uy1_A 112 YMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS---------VKNAARLIDLE 182 (493)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---------HHHHHHHHHHH
T ss_pred HHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHH
Confidence 99999953333222 221111111 11122223333222211 000 01121111111
Q ss_pred hhc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH--------
Q 009096 168 RKI--G-----DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF-------- 232 (543)
Q Consensus 168 ~~~--~-----~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------- 232 (543)
... + ..+.....|++++...|.. +.+|...+..+...|+.++|...|++++.. |.+...+..+
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~ 260 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA 260 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH
Confidence 110 0 1344567788888877765 777888888888888888888888888887 7765433222
Q ss_pred --------------------------HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 233 --------------------------LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 233 --------------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
..|...+......+..+.|...|+++ ...+.....+. ..|.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i------------~~A~ 327 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFI------------YCAF 327 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHH------------HHHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHH------------HHHH
Confidence 12333345555677889999999999 43222333331 1344
Q ss_pred HHHhcC-CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 287 NLFSSR-RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 287 ~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
.....+ +.+.|...|+.+++..|+++..|...+......|+.+.|...|+++ +.....|..........|+.+.+
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHH
Confidence 444444 6999999999999999999988888888889999999999999998 34678888888888888999999
Q ss_pred HHHHHHHHh
Q 009096 366 VRDYEALRR 374 (543)
Q Consensus 366 ~~~~~~al~ 374 (543)
.+.++++++
T Consensus 404 r~v~~~~~~ 412 (493)
T 2uy1_A 404 RELVDQKMD 412 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888775
No 372
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=99.12 E-value=1.8e-10 Score=97.82 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=74.4
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhCC-----CeEEEEEeCcCc----------------------------HH
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRYP-----YVHFFKVDVEES----------------------------LA 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~~-----~~~~~~~d~~~~----------------------------~~ 470 (543)
.++++++.||++||++ |+...|.+.++.++++ ++.|+.|++|.. ..
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE 113 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence 4679999999999998 9999999999999997 699999998742 35
Q ss_pred HHHHcCC---------------CcccEEEEEECCeEEEEEcCC---CHHHHHHHHHhcC
Q 009096 471 IAKSEGV---------------RTVPTFKIYKNGEKLKEMINP---SHQFLEDSANLAP 511 (543)
Q Consensus 471 ~~~~~~v---------------~~~Pt~~~~~~g~~~~~~~g~---~~~~~~~~~~~~~ 511 (543)
+++.||| .++||++++.+|+++.++.|. +.+++.+.|++++
T Consensus 114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~ll 172 (172)
T 2k6v_A 114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL 172 (172)
T ss_dssp HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHCC
T ss_pred HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHhC
Confidence 7777764 578998888899999998885 8899999998753
No 373
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.11 E-value=6.5e-10 Score=109.76 Aligned_cols=132 Identities=15% Similarity=0.052 Sum_probs=112.1
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhh-----cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---
Q 009096 236 LLKLMFNISELRFENAVSSAEKAGL-----LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY--- 307 (543)
Q Consensus 236 ~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 307 (543)
+..+..+..+|++++|+..++++++ +.|+++.....+++ +|.+|..+|+|++|+.++++++++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~n---------La~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSI---------ASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---------HHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3446667889999999999999985 46788887766654 899999999999999999999975
Q ss_pred -----CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 308 -----DSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYT---KALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 308 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
+|+-+..+++||.+|..+|++++|+..|++|+++ .|+++ +....++.++..++.+++|...|.++.+
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678999999999999999999999999975 57776 5567899999999999999999999865
Q ss_pred cC
Q 009096 375 EL 376 (543)
Q Consensus 375 ~~ 376 (543)
..
T Consensus 464 ~~ 465 (490)
T 3n71_A 464 AA 465 (490)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 374
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.10 E-value=4.6e-10 Score=85.31 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=78.9
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchh-hHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAA-YRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999999988754
Q ss_pred CCHHHHHHHhcCCCC
Q 009096 130 GQVENARHHLCFPGH 144 (543)
Q Consensus 130 g~~~~A~~~~~~a~~ 144 (543)
+.+.+++..|++++.
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 567788888888765
No 375
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=97.88 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=75.0
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhC------CCeEEEEEeCcCc----------------------------H
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRY------PYVHFFKVDVEES----------------------------L 469 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~------~~~~~~~~d~~~~----------------------------~ 469 (543)
.++++++.||++||++ |+...|.+.++.+++ +++.|+.|++|.. .
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA 104 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3679999999999998 999999999999887 4799999988731 2
Q ss_pred HHHHHcCCCccc---------------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 470 AIAKSEGVRTVP---------------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 470 ~~~~~~~v~~~P---------------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.+++.|||..+| +++++ ++|+++.++.|. +.+++.+.|++++.
T Consensus 105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA 164 (171)
T ss_dssp HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 588999999988 66666 699999999998 99999999987653
No 376
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=98.67 E-value=1.1e-11 Score=101.71 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=62.6
Q ss_pred CC-ceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCc-------------------------HHHHHHc
Q 009096 426 PG-VSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEES-------------------------LAIAKSE 475 (543)
Q Consensus 426 ~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~-------------------------~~~~~~~ 475 (543)
++ ++++.||++||++|+.+.|.+.++.+++ +++.++.|+++.. ..+++.|
T Consensus 25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (143)
T 2lus_A 25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY 104 (143)
Confidence 45 8999999999999999999999999988 4688888888754 3689999
Q ss_pred CCCcccEEEEEE-CCeEEEEEcC
Q 009096 476 GVRTVPTFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 476 ~v~~~Pt~~~~~-~g~~~~~~~g 497 (543)
+|.++||++++. +|+++.+..+
T Consensus 105 ~v~~~P~~~lid~~G~i~~~~~~ 127 (143)
T 2lus_A 105 GITGIPALVIVKKDGTLISMNGR 127 (143)
Confidence 999999999997 9999887543
No 377
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=4.2e-09 Score=85.38 Aligned_cols=119 Identities=10% Similarity=-0.081 Sum_probs=103.4
Q ss_pred hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
.+++++|+.+|+++.+....... +|.++...+.+++|+++|+++.+. .++.+++++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----------------lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----------------LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----------------HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----------------HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHc
Confidence 35789999999999987644332 488899999999999999999987 679999999999999
Q ss_pred ----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 325 ----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 325 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
.+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+...
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 89999999999999987 789999999999999 999999999999999984 4444433
No 378
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=2.1e-09 Score=85.96 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhccCCCChhHHhHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMG---LWENSIEDCNVALRIQ-P-NYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 294 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
...+.+.|.+.++.+|.+.++.+++|.++.+.+ +.++++..++.+++.+ | ++.+.+|++|..++++|+|++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888888999999999999999988 6779999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 369 YEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 369 ~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
++++++++|++.++......+...+.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887777666644
No 379
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=99.04 E-value=1.2e-09 Score=104.89 Aligned_cols=98 Identities=8% Similarity=0.105 Sum_probs=81.3
Q ss_pred hhhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCCc--ccEEEEEECC
Q 009096 416 LEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVRT--VPTFKIYKNG 489 (543)
Q Consensus 416 ~~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~~--~Pt~~~~~~g 489 (543)
.+.+...... .+++++.|+++||++|+.+.|.+.++++++.+ +.|+.+|++ +.+.+++.|||.+ +||++++.+|
T Consensus 124 ~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~ 203 (361)
T 3uem_A 124 EQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLE 203 (361)
T ss_dssp TTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC
T ss_pred cccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcC
Confidence 3444454444 45678999999999999999999999999976 999999999 7899999999998 9999999987
Q ss_pred eEEEEEc---CC-CHHHHHHHHHhcCCC
Q 009096 490 EKLKEMI---NP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 490 ~~~~~~~---g~-~~~~~~~~~~~~~~~ 513 (543)
....++. |. +.+.|++|++.++..
T Consensus 204 ~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 204 EEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp --CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred CcccccCCCccccCHHHHHHHHHHHhcC
Confidence 6655654 55 999999999987654
No 380
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=99.04 E-value=2.7e-10 Score=95.85 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=74.2
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhC------CCeEEEEEeCcCc----------------------------H
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRY------PYVHFFKVDVEES----------------------------L 469 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~------~~~~~~~~d~~~~----------------------------~ 469 (543)
.++++++.||++||++ |+...|.+.++.+++ +++.++.|++|.. .
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~ 101 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 101 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3679999999999998 999999999998877 3788888888752 2
Q ss_pred HHHHHcCCCccc---------------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 470 AIAKSEGVRTVP---------------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 470 ~~~~~~~v~~~P---------------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.+++.|||..+| +++++ ++|+++.++.|. +++++.+.|++++.
T Consensus 102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 161 (164)
T 2ggt_A 102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 161 (164)
T ss_dssp HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 488999999999 55555 699999999998 99999999987653
No 381
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=99.02 E-value=3.2e-10 Score=97.75 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=72.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC--------cH---HHH-H-----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE--------SL---AIA-K----------------- 473 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~--------~~---~~~-~----------------- 473 (543)
.++++++.||++||++|+...|.+.++.+++++ +.|+.|++|. .. ..+ +
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~ 126 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 126 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence 467999999999999999999999999998864 9999998862 11 122 2
Q ss_pred ------------HcCCCccc------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 474 ------------SEGVRTVP------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ------------~~~v~~~P------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.++|.++| +++++ ++|+++.++.|. +++++.+.|++++...
T Consensus 127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 187 (190)
T 2vup_A 127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLEST 187 (190)
T ss_dssp TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhhc
Confidence 24888899 65555 699999999998 9999999999876543
No 382
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.02 E-value=6e-10 Score=93.25 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=69.1
Q ss_pred CCc-eeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCc---------------------CcHHHHHHcCCCc-
Q 009096 426 PGV-SLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE---------------------ESLAIAKSEGVRT- 479 (543)
Q Consensus 426 ~~~-~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~---------------------~~~~~~~~~~v~~- 479 (543)
++. +++.|| ++||++|+...|.+.++.++++ ++.|+.|++| ....+++.|||.+
T Consensus 28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (161)
T 3drn_A 28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF 107 (161)
T ss_dssp TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence 455 999999 9999999999999999999984 4899999887 4568999999999
Q ss_pred ---ccEEEEE-ECCeEEEEEcC-C-CHHHHHHHHH
Q 009096 480 ---VPTFKIY-KNGEKLKEMIN-P-SHQFLEDSAN 508 (543)
Q Consensus 480 ---~Pt~~~~-~~g~~~~~~~g-~-~~~~~~~~~~ 508 (543)
+|+++++ ++|+++.+..| . ..+.+.++++
T Consensus 108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~ 142 (161)
T 3drn_A 108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALK 142 (161)
T ss_dssp SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHH
T ss_pred CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHH
Confidence 9988888 59999999999 3 4444444444
No 383
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.8e-10 Score=96.39 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=69.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCc-----------CcHHHH-------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVE-----------ESLAIA------------------- 472 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~-----------~~~~~~------------------- 472 (543)
.++++++.||++||++|+ ..|.|.++.+++++ +.++.|+++ .....+
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 109 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG 109 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence 468999999999999999 99999999998854 889888763 111122
Q ss_pred -----------HHcCCCccc------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 473 -----------KSEGVRTVP------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 473 -----------~~~~v~~~P------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..|+|.++| +++++ ++|+++.++.|. +++++++.|++++..
T Consensus 110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 169 (171)
T 3cmi_A 110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKE 169 (171)
T ss_dssp TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 247899999 66655 799999999997 999999999987643
No 384
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=98.98 E-value=5.5e-10 Score=81.18 Aligned_cols=72 Identities=10% Similarity=0.160 Sum_probs=57.5
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHH---HcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAK---SEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
++.|+++||++|+.+.+.|++. ++.|..+|+++++++.+ ++|+.++||+ +.+|+. +.|+++++|+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g~~~~~l~~~ 72 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSGFRPDMINRL 72 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EESCCHHHHGGG
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---EecCCHHHHHHH
Confidence 5679999999999999999874 57788899998766554 5899999998 458874 457888888888
Q ss_pred HHhcC
Q 009096 507 ANLAP 511 (543)
Q Consensus 507 ~~~~~ 511 (543)
|+++.
T Consensus 73 l~~~~ 77 (81)
T 1h75_A 73 HPAPH 77 (81)
T ss_dssp SCCC-
T ss_pred Hhccc
Confidence 77543
No 385
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=98.97 E-value=1.6e-09 Score=93.11 Aligned_cols=89 Identities=9% Similarity=0.012 Sum_probs=70.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC--------cHHHH----------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE--------SLAIA---------------------- 472 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~--------~~~~~---------------------- 472 (543)
.+++++|.||++||++|+...|.|.++.+++++ +.++.|++|. ...+.
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 124 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 124 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence 468999999999999999999999999999864 8888887651 11221
Q ss_pred --------------HHcCCCccc---EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 473 --------------KSEGVRTVP---TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 473 --------------~~~~v~~~P---t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..+++.++| |++++ ++|+++.++.|. +++++++.|++++..
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS 184 (187)
T ss_dssp -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 122455677 77777 699999999998 999999999998763
No 386
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=98.97 E-value=1.3e-09 Score=92.54 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=68.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV--------------------------------------- 465 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~--------------------------------------- 465 (543)
..+++++.|+..|||+|+.+.|.+.++.++++++.|...++
T Consensus 21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~ 100 (175)
T 3gyk_A 21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANE 100 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCH
Confidence 35688999999999999999999999999998877666552
Q ss_pred ------------------------------cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 466 ------------------------------EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 466 ------------------------------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.+..++.++||.++||+++ ||+ .+.|. +.+.+++.|++.+
T Consensus 101 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l 172 (175)
T 3gyk_A 101 TGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR 172 (175)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence 23456788999999999987 886 55698 9999999998753
No 387
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=98.97 E-value=7.8e-10 Score=95.15 Aligned_cols=88 Identities=19% Similarity=0.070 Sum_probs=76.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|+...|.|.++.++++ ++.++.|++|. ...+++.||
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD 109 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence 3579999999 9999999999999999999885 68999998874 356889999
Q ss_pred CC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcCC
Q 009096 477 VR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAPS 512 (543)
Q Consensus 477 v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~~ 512 (543)
|. ++|+++++ ++|+++.+..|. +.+++.+.|+++..
T Consensus 110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY 157 (187)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 99 99999999 699999998774 57889999987653
No 388
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=98.96 E-value=1.6e-09 Score=77.42 Aligned_cols=69 Identities=10% Similarity=0.198 Sum_probs=57.7
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHH---HcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAK---SEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
++.|+++||++|+.+.+.|+++ ++.|..+|++.++++.+ ++|+.++|++++ ||+. +.|+++++++++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~~~~l~~~ 72 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIKQL 72 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCCHHHHHHH
Confidence 5679999999999999999875 57788899998876665 899999999873 8874 568899999888
Q ss_pred HH
Q 009096 507 AN 508 (543)
Q Consensus 507 ~~ 508 (543)
|+
T Consensus 73 l~ 74 (75)
T 1r7h_A 73 QA 74 (75)
T ss_dssp HC
T ss_pred Hh
Confidence 74
No 389
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.96 E-value=2.8e-09 Score=105.27 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=75.6
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhc-----CCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISM-----SPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRL-----DPG--- 114 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~--- 114 (543)
....+..+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344556677899999999999999975 3343 578899999999999999999999999875 244
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
-...+.+||.+|..+|++++|+..|++++
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678899999999999999998886554
No 390
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.96 E-value=8.6e-09 Score=76.46 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=70.0
Q ss_pred CCCChhHHhHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 308 DSYNSILYCNRAICWSKMGL---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|.++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 68899999999999987766 7999999999999999999999999999999999999999999999999996543
No 391
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.94 E-value=1.2e-09 Score=94.57 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=76.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|+...|.+.++.++++ ++.|+.|++|. ...+++.|+
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 123 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 123 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence 3578999999 9999999999999999998885 59999998874 346889999
Q ss_pred CC-----cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcCC
Q 009096 477 VR-----TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAPS 512 (543)
Q Consensus 477 v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~~ 512 (543)
|. ++|+++++ ++|+++.+..|. +.+++.+.|+++..
T Consensus 124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS 170 (195)
T ss_dssp CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 99 99999888 499999998774 58999999998765
No 392
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=98.94 E-value=1.1e-09 Score=92.57 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=71.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC--------c---HHHHH-Hc---------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE--------S---LAIAK-SE--------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~--------~---~~~~~-~~--------------- 475 (543)
.++++++.||++||++|+...|.+.++.+++++ +.++.|++|. . ...++ ++
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE 110 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence 468999999999999999999999999998864 9999998752 1 22233 32
Q ss_pred --------------CC--Cccc---EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 476 --------------GV--RTVP---TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 476 --------------~v--~~~P---t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|| .++| |++++ ++|+++.++.|. +++++.+.|++++..
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 169 (170)
T 2p5q_A 111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEI 169 (170)
T ss_dssp TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTC
T ss_pred chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhc
Confidence 45 6789 66666 699999999998 899999999987653
No 393
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=98.94 E-value=1.8e-09 Score=93.74 Aligned_cols=87 Identities=9% Similarity=0.046 Sum_probs=74.5
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|+...|.+.++.++++ ++.++.|++|. ...+++
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR 111 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence 4579999999 9999999999999999998884 58899998874 457899
Q ss_pred HcCCC-----cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR-----TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~-----~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. ++|+++++. +|+++.+..|. +.+++.+.|+++.
T Consensus 112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 99999 999888885 99999998774 5788998888764
No 394
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=93.64 Aligned_cols=87 Identities=11% Similarity=-0.033 Sum_probs=69.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------c----HHHHHH-----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------S----LAIAKS----------------- 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------~----~~~~~~----------------- 474 (543)
.++++++.||++||++|+...|.|.++.+++++ +.++.|+++. . ...+++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~ 127 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT 127 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence 467999999999999999999999999999864 8999998763 1 122233
Q ss_pred -------cCCCccc-------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 475 -------EGVRTVP-------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 475 -------~~v~~~P-------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|++.++| +++++ ++|+++.++.|. +++++.+.|++++
T Consensus 128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 2355678 55444 799999999998 9999999999865
No 395
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.91 E-value=2.9e-08 Score=92.16 Aligned_cols=130 Identities=13% Similarity=-0.026 Sum_probs=100.7
Q ss_pred HHHHHHhh---cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh---cC-----C---HHHHHHHHHH
Q 009096 238 KLMFNISE---LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS---SR-----R---YSEACSAYGE 303 (543)
Q Consensus 238 ~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~---~~-----~---~~~A~~~~~~ 303 (543)
+|..+... ....+|+.+|+++++++|++..++..+ +.++.. .+ . ...|+.. ..
T Consensus 202 ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~l------------a~a~~~~~~~~~~~~~~~~~l~~a~~a-~~ 268 (372)
T 3ly7_A 202 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK------------ALVDIVRHSQHPLDEKQLAALNTEIDN-IV 268 (372)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHHHHSCCCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHhccCCCchhhHHHHHHHHHH-HH
Confidence 35555544 346899999999999999998887543 222211 11 1 1122221 12
Q ss_pred HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 304 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++...|.++.++..++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 34667999999999999999999999999999999999975 788899999999999999999999999999998764
No 396
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=98.90 E-value=4e-09 Score=88.17 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=68.6
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
+++++.|| ++||++|+...|.+.++.+++. ++.|+.|++|. ...+++.|||.
T Consensus 37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~ 116 (160)
T 1xvw_A 37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE 116 (160)
T ss_dssp CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccc
Confidence 38999998 9999999999999999999994 58999998864 56799999999
Q ss_pred --ccc--EEEEE-ECCeEEEEEcCC-C----HHHHHHHHHhc
Q 009096 479 --TVP--TFKIY-KNGEKLKEMINP-S----HQFLEDSANLA 510 (543)
Q Consensus 479 --~~P--t~~~~-~~g~~~~~~~g~-~----~~~~~~~~~~~ 510 (543)
++| +++++ ++|+++.+..|. + .+++.+.|+++
T Consensus 117 ~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 117 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred cCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 55555 699999998886 2 35555555543
No 397
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.89 E-value=1.3e-08 Score=75.48 Aligned_cols=74 Identities=20% Similarity=0.108 Sum_probs=67.7
Q ss_pred cccCHHHHHHHhhHHHhcCC---HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 009096 44 VAVDAEEVKRAGNEMYRKGN---FVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR 117 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (543)
+|.+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999986665 799999999999999999999999999999999999999999999999998443
No 398
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=98.89 E-value=2.7e-09 Score=90.17 Aligned_cols=87 Identities=8% Similarity=0.025 Sum_probs=68.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------c----HHH-HHHc---------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------S----LAI-AKSE--------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------~----~~~-~~~~--------------- 475 (543)
.++++++.||++||++|+...|.+.++.+++++ +.++.|+++. . ... .+++
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 109 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS 109 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence 468999999999999999999999999998864 9999998753 1 112 1222
Q ss_pred --------------C-----CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 476 --------------G-----VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 476 --------------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
| |..+|+++++ ++|+++.++.|. +++++.+.|++++
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 166 (169)
T 2v1m_A 110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166 (169)
T ss_dssp TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence 4 3345776666 699999999998 8899999888754
No 399
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=98.89 E-value=2.1e-09 Score=94.45 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=63.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEe----------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD---------------------------------------- 464 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d---------------------------------------- 464 (543)
..+++++.||.+|||+|+.+.|.++++.+. ++++..+.
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~ 162 (216)
T 1eej_A 85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS 162 (216)
T ss_dssp TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence 356889999999999999999999998764 45444332
Q ss_pred ----CcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 465 ----VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 465 ----~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
++++..+++++||.++||+ ++.||+ ++.|+ +.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 163 CDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp CSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 2345678999999999998 556885 45698 999999999864
No 400
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=98.88 E-value=2.9e-09 Score=92.78 Aligned_cols=87 Identities=13% Similarity=-0.047 Sum_probs=67.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC--------cHHH---HH------HcC---------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE--------SLAI---AK------SEG--------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~--------~~~~---~~------~~~--------- 476 (543)
.+++++|.||++||++|+...|.|.++.++|+ ++.++.|+++. ...+ ++ +++
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 125 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC 125 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence 46799999999999999999999999999885 38999998751 1222 22 333
Q ss_pred --------------------------------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 477 --------------------------------------------VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 477 --------------------------------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|...||++++ ++|+++.++.|. +++++++.|+++
T Consensus 126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l 205 (208)
T 2f8a_A 126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 205 (208)
T ss_dssp CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3334866665 699999999998 889999988875
Q ss_pred C
Q 009096 511 P 511 (543)
Q Consensus 511 ~ 511 (543)
+
T Consensus 206 l 206 (208)
T 2f8a_A 206 L 206 (208)
T ss_dssp H
T ss_pred h
Confidence 4
No 401
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.87 E-value=2e-07 Score=82.83 Aligned_cols=87 Identities=8% Similarity=-0.072 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-ccCHH
Q 009096 293 RYSEACSAYGEGLKYDSY--NSILYCNRAICWSKM-----GLWENSIEDCNVALRIQPNY-TKALLRRAVSNEK-LGRWS 363 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~ 363 (543)
...+|...++++++++|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 367899999999999999 677999999999995 99999999999999999975 9999999999988 49999
Q ss_pred HHHHHHHHHHhcCCCC
Q 009096 364 EAVRDYEALRRELPGD 379 (543)
Q Consensus 364 ~A~~~~~~al~~~p~~ 379 (543)
+|.+++++++..+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999998874
No 402
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=98.87 E-value=3.5e-09 Score=90.68 Aligned_cols=86 Identities=19% Similarity=0.065 Sum_probs=67.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------c----HHHHHH-----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------S----LAIAKS----------------- 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------~----~~~~~~----------------- 474 (543)
.++++++.||++||++|+...|.|.++.+++++ +.|+.|+++. . ...+++
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 125 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 125 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence 467999999999999999999999999998864 8999998752 1 111122
Q ss_pred ----c----------C-----CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 475 ----E----------G-----VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 475 ----~----------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
| | |..+|+++++ ++|+++.++.|. +++++++.|+++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 182 (183)
T 2obi_A 126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182 (183)
T ss_dssp SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence 1 4 3335987777 699999999998 889998888765
No 403
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=98.86 E-value=2.1e-09 Score=82.49 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=60.3
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-------HHHHHHcCCCcccEEEEEECCeE
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-------LAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-------~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
+.+.+... .++.|+++||++|+.+.|.|+++...+++ |..+|++.. ..+.+.+|+.++||+ |.+|+.
T Consensus 5 ~~~~i~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ 78 (105)
T 1kte_A 5 VNSKIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKEC 78 (105)
T ss_dssp HHHHCCTT--CEEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEE
T ss_pred HHhhcccC--CEEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEE
Confidence 44555433 36779999999999999999998777766 445566554 358889999999997 458987
Q ss_pred EEEEc---CC-CHHHHHHHHHh
Q 009096 492 LKEMI---NP-SHQFLEDSANL 509 (543)
Q Consensus 492 ~~~~~---g~-~~~~~~~~~~~ 509 (543)
+.... +. ...+|.++|+.
T Consensus 79 i~g~~~~~~~~~~g~L~~~l~~ 100 (105)
T 1kte_A 79 IGGCTDLESMHKRGELLTRLQQ 100 (105)
T ss_dssp EESHHHHHHHHHHTHHHHHHHH
T ss_pred EeccHHHHHHHHCCcHHHHHHH
Confidence 65321 12 35666666654
No 404
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=98.86 E-value=3.2e-09 Score=92.75 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=64.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV--------------------------------------- 465 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~--------------------------------------- 465 (543)
..+++++.|+.+|||+|+.+.|.++++.+. ++++..+..
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~ 162 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK 162 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence 356889999999999999999999998653 455443321
Q ss_pred -----cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 466 -----EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 466 -----~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+++..+++++||+++||+++ .||+ ++.|+ +.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~ 209 (211)
T 1t3b_A 163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET 209 (211)
T ss_dssp CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence 23467889999999999998 7897 56798 999999999875
No 405
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=98.82 E-value=7e-09 Score=89.53 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=74.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.+++ .++.|+.|++|. ...+++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 109 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR 109 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence 4578999999 999999999999999999888 568899888763 246899
Q ss_pred HcCCC-----cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR-----TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. .+|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 99999 89999999 599999998774 4788888888654
No 406
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=98.82 E-value=6.3e-09 Score=88.24 Aligned_cols=86 Identities=8% Similarity=0.016 Sum_probs=69.8
Q ss_pred CCCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC----------------------cHHHHHHcCCCcc-
Q 009096 425 SPGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE----------------------SLAIAKSEGVRTV- 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~----------------------~~~~~~~~~v~~~- 480 (543)
.++++++.||++| |++|+...|.|.++.++ +++.|+.|++|. ...+++.|||..+
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 121 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD 121 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence 3578999999998 99999999999999988 889999998872 2468899999887
Q ss_pred --------cEEEEE-ECCeEEEEEcC--C-CHHHHHHHHHhcC
Q 009096 481 --------PTFKIY-KNGEKLKEMIN--P-SHQFLEDSANLAP 511 (543)
Q Consensus 481 --------Pt~~~~-~~g~~~~~~~g--~-~~~~~~~~~~~~~ 511 (543)
|+++++ ++|+++.+..| . +.++++++|+.+.
T Consensus 122 ~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~ 164 (175)
T 1xvq_A 122 GPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG 164 (175)
T ss_dssp STTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred cccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHH
Confidence 876666 59999999874 3 4556777776654
No 407
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=98.81 E-value=8e-09 Score=90.96 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=74.1
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.|| ++||++|+...|.|.++.+++ .++.|+.|++|. ...+++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 589999999 999999999999999999988 569999888763 3468999
Q ss_pred cCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 475 EGVR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 475 ~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
|||. .+|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 184 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ 184 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 9999 99999999 599999987764 5688988888765
No 408
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=98.79 E-value=7.6e-09 Score=90.04 Aligned_cols=87 Identities=10% Similarity=-0.030 Sum_probs=74.1
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.++| .++.|+.|++|. ...+++
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 114 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK 114 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence 3579999999 999999999999999999988 469999998864 346899
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. ++|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 99999 99998888 599999987764 4588988888764
No 409
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=98.79 E-value=7.8e-09 Score=88.60 Aligned_cols=86 Identities=17% Similarity=0.042 Sum_probs=67.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------cHHHHHHc----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------SLAIAKSE---------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------~~~~~~~~---------------- 475 (543)
.++++++.||++||++|+...|.+.++.++++ ++.++.|++|. ....++++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 127 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 127 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence 46799999999999999999999999999885 48999998752 12233333
Q ss_pred ---------------CCCc-----ccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 476 ---------------GVRT-----VPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 476 ---------------~v~~-----~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|+.+ +|+++++ ++|+++.++.|. +++++.+.|+++
T Consensus 128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence 3222 4777777 699999999998 889998888764
No 410
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.78 E-value=5.8e-08 Score=74.12 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=72.0
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcC-------CcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMS-------PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRA 118 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (543)
.+++..+.+|..++..|+|..|+.+|++|++.. +..+.++..+|.+++++|++++|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 468889999999999999999999999999863 3457889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 009096 119 HQRLAS 124 (543)
Q Consensus 119 ~~~la~ 124 (543)
..+++.
T Consensus 83 ~~n~~~ 88 (104)
T 2v5f_A 83 NGNLKY 88 (104)
T ss_dssp HHHHHH
T ss_pred HhhHHH
Confidence 888873
No 411
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.3e-09 Score=83.87 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=62.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc---H----HHHHHcCCCcccEEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES---L----AIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~---~----~~~~~~~v~~~Pt~~~~~ 487 (543)
..+.+.+.+... . ++.|+++||++|+.+.+.|+++. +.|..+|++.. + ++.+.+|+.++|+++ .
T Consensus 16 ~~~~~~~~i~~~-~-vvvf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i 86 (130)
T 2cq9_A 16 PVNQIQETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--V 86 (130)
T ss_dssp HHHHHHHHHHHS-S-EEEEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--E
T ss_pred HHHHHHHHHcCC-c-EEEEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--E
Confidence 334555555443 3 34499999999999999999874 44556677654 3 378899999999984 5
Q ss_pred CCeEEEE---EcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKE---MINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~---~~g~-~~~~~~~~~~~~~ 511 (543)
||+.+.. +.+. ...+|.++|+..-
T Consensus 87 ~G~~igg~~~l~~~~~~~~L~~~L~~~g 114 (130)
T 2cq9_A 87 NGTFIGGATDTHRLHKEGKLLPLVHQCY 114 (130)
T ss_dssp TTEEEEEHHHHHHHHHHTSSHHHHHHHS
T ss_pred CCEEEcChHHHHHHHHcCcHHHHHHHcC
Confidence 9987764 2334 5667888888753
No 412
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=5.2e-08 Score=78.87 Aligned_cols=120 Identities=10% Similarity=-0.050 Sum_probs=90.1
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
++++|+.+|+++.+..... .. +|.+|...+..++|+.+|+++.+. .++.+. +++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--------lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~------------~~Lg~ 65 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--------LSLVSNSQINKQKLFQYLSKACEL--NSGNGC------------RFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--------HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHH------------HHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--------HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHH------------HHHHH
Confidence 4555555555555444222 11 277777778888899999998876 445443 45799
Q ss_pred HHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 287 NLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 287 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+..+++.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 9988 89999999999999886 678999999999999 89999999999999987 45666666553
No 413
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.76 E-value=4.9e-08 Score=94.79 Aligned_cols=105 Identities=9% Similarity=-0.068 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKY-----DSYN---SILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYT--- 346 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~--- 346 (543)
..+......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444455678999999999999975 4554 567899999999999999999999999975 46665
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCChHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRE-----LPGDNEVAESLH 387 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~ 387 (543)
..+.++|.+|..+|++++|...|++|+++ .|++|.+.....
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 56899999999999999999999999985 688888875443
No 414
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=98.76 E-value=4.9e-09 Score=89.42 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=66.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-----------cHHHHHH-cCCC------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-----------SLAIAKS-EGVR------------ 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-----------~~~~~~~-~~v~------------ 478 (543)
.+++++|.||++||++|+...|.+.++.++|++ +.++.|.++. ....+++ +++.
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 116 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS 116 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence 467999999999999999999999999999864 8999887653 1334555 5432
Q ss_pred --------------cccE-----EEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 479 --------------TVPT-----FKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 479 --------------~~Pt-----~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+ +++.++|+++.++.|. +++++++.|++++
T Consensus 117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL 169 (180)
T 3kij_A 117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 169 (180)
T ss_dssp TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 2564 5555799999999997 7777777666543
No 415
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.76 E-value=1e-07 Score=72.65 Aligned_cols=82 Identities=11% Similarity=-0.079 Sum_probs=57.4
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQ-------PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
+.-++.+|..++..|+|..|+.+|++|++.. +..+.++..+|.++.++|++++|+.+++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455667777777777777777777776642 234577778888888888888888888888888888877766
Q ss_pred HHHHHHHHH
Q 009096 385 SLHNAQVAL 393 (543)
Q Consensus 385 ~l~~~~~~l 393 (543)
++......+
T Consensus 85 n~~~~~~~~ 93 (104)
T 2v5f_A 85 NLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 665444433
No 416
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=98.76 E-value=1.4e-08 Score=88.77 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=73.2
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.++| .++.|+.|++|. ...+++
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 130 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK 130 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence 4578999999 999999999999999999988 568888887764 346899
Q ss_pred HcCCC-----cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR-----TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. .+|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 99999 89987777 599999987664 4889998888754
No 417
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=98.75 E-value=2.5e-09 Score=83.25 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=60.8
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-------HHHHHcCCCcccEEEEEECC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-------AIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-------~~~~~~~v~~~Pt~~~~~~g 489 (543)
....+.+. ...++.|+++||++|+.+.+.|+++...++. |..+|++..+ ++.+.+|+.++|+++ .||
T Consensus 10 ~~~~~~i~--~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g 83 (114)
T 2hze_A 10 EFVQQRLA--NNKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGK 83 (114)
T ss_dssp HHHHTTCC--TTCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETT
T ss_pred HHHHHHhc--cCCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECC
Confidence 33444443 3457779999999999999999876544333 7778887663 788999999999874 489
Q ss_pred eEEEEEc---CC-CHHHHHHHHHh
Q 009096 490 EKLKEMI---NP-SHQFLEDSANL 509 (543)
Q Consensus 490 ~~~~~~~---g~-~~~~~~~~~~~ 509 (543)
+.+.... +. +..+|+++|+.
T Consensus 84 ~~igg~~~~~~~~~~~~L~~~L~~ 107 (114)
T 2hze_A 84 TSIGGYSDLLEIDNMDALGDILSS 107 (114)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHH
T ss_pred EEEeCcHHHHHHHHCChHHHHHHH
Confidence 8765332 12 34567777764
No 418
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=98.74 E-value=1.8e-08 Score=87.24 Aligned_cols=87 Identities=10% Similarity=-0.036 Sum_probs=73.1
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.+++ .++.|+.|++|. ...+++
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 112 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE 112 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHHHHH
Confidence 3578999999 999999999999999999888 459999998873 246899
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. ++|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 113 ~~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~l~~l~~l~ 162 (197)
T 1qmv_A 113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ 162 (197)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HcCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHHHHHHHHhcc
Confidence 99999 89987777 599999988774 4688888888763
No 419
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=98.74 E-value=3.1e-08 Score=83.28 Aligned_cols=86 Identities=10% Similarity=0.156 Sum_probs=70.5
Q ss_pred CCCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCc-
Q 009096 425 SPGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~- 479 (543)
.++++++.||++| |++|+...|.+.++.++++++.|+.|++|. ...+++.|||..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~ 122 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK 122 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBT
T ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccc
Confidence 3578999999999 999999999999999988778888888763 346889999987
Q ss_pred -----ccEEEEE-ECCeEEEEEcCC------CHHHHHHHHHhc
Q 009096 480 -----VPTFKIY-KNGEKLKEMINP------SHQFLEDSANLA 510 (543)
Q Consensus 480 -----~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~~ 510 (543)
.|+++++ ++|+++.+..|. +.+++.+.|+++
T Consensus 123 ~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 123 ELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred cCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 4987777 599999998763 347787777764
No 420
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=98.73 E-value=1.4e-08 Score=88.12 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhC-----CCeEEEEEeCcC----------------------------cHH
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRY-----PYVHFFKVDVEE----------------------------SLA 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~-----~~~~~~~~d~~~----------------------------~~~ 470 (543)
.++++++.||++||++ |....|.|.++.+++ .++.++.|++|. ...
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~ 119 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN 119 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence 4679999999999998 999999999876655 268888888773 135
Q ss_pred HHHHcCCC-ccc---------------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 471 IAKSEGVR-TVP---------------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 471 ~~~~~~v~-~~P---------------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++.|||. +.| +++++ ++|+++.++.|. +.+++.+.|++.+
T Consensus 120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l 178 (200)
T 2b7k_A 120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV 178 (200)
T ss_dssp HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899997 454 44444 699999999886 7766666666554
No 421
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=98.71 E-value=3.7e-08 Score=87.86 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=66.5
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC----------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV---------------------------------------- 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~---------------------------------------- 465 (543)
.+.+++.|+.+|||+|+.+.|.+.++.++ .+++|..+++
T Consensus 97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~ 175 (241)
T 1v58_A 97 APVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA 175 (241)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccc
Confidence 45689999999999999999999988776 4576665443
Q ss_pred ----------cCcHHHHHHcCCCcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 466 ----------EESLAIAKSEGVRTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 466 ----------~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.+..+++++||.++||+++.. +|+. .++.|+ +.++|.++|++..
T Consensus 176 ~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~ 232 (241)
T 1v58_A 176 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL 232 (241)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence 1234578999999999999987 5864 678898 9999999998754
No 422
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=98.71 E-value=4.5e-08 Score=82.98 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCceeeeeeCCCCc-cccchhHhHHHHHhhCC----CeEEEEEeCcC---c-------------------------HHH
Q 009096 425 SPGVSLVHFKEASSE-KCEEISPFVNLLCVRYP----YVHFFKVDVEE---S-------------------------LAI 471 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~~----~~~~~~~d~~~---~-------------------------~~~ 471 (543)
.++++++.||++||+ +|....|.+.++.++++ ++.|+.|++|. . ..+
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~ 111 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE 111 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence 467899999999999 99999999999988773 38999998762 1 122
Q ss_pred HHH----------------cCCCcccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcCC
Q 009096 472 AKS----------------EGVRTVPTFKIY-KNGEKLKEMINP---SHQFLEDSANLAPS 512 (543)
Q Consensus 472 ~~~----------------~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~ 512 (543)
.+. +++..+|+++++ ++|+++.++.|. +.+++.+.|++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 222 246778986666 699999999997 37999999998764
No 423
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.70 E-value=1.6e-07 Score=91.41 Aligned_cols=106 Identities=7% Similarity=0.008 Sum_probs=89.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---H
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKY-----DSYN---SILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYT---K 347 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~ 347 (543)
....+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566889999999999999975 3444 578999999999999999999999999975 45665 5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCChHHHHHHHHH
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRE-----LPGDNEVAESLHNA 389 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~ 389 (543)
.++++|.+|..+|++++|...|++|+++ .|++|.+...+...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 6899999999999999999999999985 78898887665443
No 424
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=2e-07 Score=74.58 Aligned_cols=98 Identities=9% Similarity=-0.028 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CChhHHhHHHHH
Q 009096 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR---RYSEACSAYGEGLKYD-S-YNSILYCNRAIC 321 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~ 321 (543)
....+.+.|.+.+..++.+.++. ++.|.++.+.+ ++++++.+++.+++.+ | ++.+.++++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~------------F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQ------------FEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHH------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHH------------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 34566777888888788777764 45799999988 7789999999999998 7 568999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 322 WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 322 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
++++|+|++|+++++++++++|+|..+...+-.+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998876655443
No 425
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=98.65 E-value=3.9e-08 Score=84.78 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc-------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE------------------------------------- 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~------------------------------------- 466 (543)
..+++++.|+..|||+|+.+.|.+.++.+++++ +.|..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~ 103 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK 103 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 456889999999999999999999999999986 666655431
Q ss_pred ------------------------------------CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 467 ------------------------------------ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 467 ------------------------------------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
.+..++.++||.++||+++ ||+.+....|. +.+.+.+.|+.
T Consensus 104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~ 181 (192)
T 3h93_A 104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY 181 (192)
T ss_dssp CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence 0123567889999999987 99877666687 99999998887
Q ss_pred cC
Q 009096 510 AP 511 (543)
Q Consensus 510 ~~ 511 (543)
.+
T Consensus 182 l~ 183 (192)
T 3h93_A 182 LI 183 (192)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 426
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=98.62 E-value=8e-08 Score=84.70 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=69.8
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.+++++|.||+ +||++|....|.|.++.++|. ++.|+.|++|. ...+++
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 147 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK 147 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence 46799999996 999999999999999999984 58999898874 236889
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHh
Q 009096 474 SEGVR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANL 509 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~ 509 (543)
.|+|. .+|+++++ ++|+++.+..|. ..+++.+.|+.
T Consensus 148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 99999 89998888 599999988774 34566666664
No 427
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.62 E-value=5.6e-07 Score=79.91 Aligned_cols=87 Identities=20% Similarity=0.024 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHhhcCCCc--HHHHHHHHhHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhccCCCC-hhHHhHH
Q 009096 247 RFENAVSSAEKAGLLDYSN--VEIASVLTNVKMVVRARTRGNNLFSS-----RRYSEACSAYGEGLKYDSYN-SILYCNR 318 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~l 318 (543)
...+|...++++++++|+. ..++.. +|..|... |+.++|.++|+++++++|+. ..+++.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~------------LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y 245 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNV------------LTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHH------------HHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHH------------HHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 4578999999999999994 445533 68888885 99999999999999999975 9999999
Q ss_pred HHHHHH-ccCHHHHHHHHHHHHhhCCCC
Q 009096 319 AICWSK-MGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 319 a~~~~~-~g~~~~A~~~~~~al~~~p~~ 345 (543)
|..+.. .|++++|...+++++..+|..
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999988 599999999999999988763
No 428
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=98.62 E-value=7.2e-08 Score=71.71 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=55.3
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-----Cc----HHHHHHcCCCcccEEEEEECCeEEEEEcCCC
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-----ES----LAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-----~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 499 (543)
.++.|+++||++|+.+.+.|+++. +.+-.+|++ +. +++.+.+++.++|++++ ||+. +.|++
T Consensus 13 ~v~ly~~~~Cp~C~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~ 82 (92)
T 3ic4_A 13 EVLMYGLSTCPHCKRTLEFLKREG-----VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN 82 (92)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred eEEEEECCCChHHHHHHHHHHHcC-----CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence 366789999999999999999874 334455655 33 66778899999999887 8864 45889
Q ss_pred HHHHHHHHH
Q 009096 500 HQFLEDSAN 508 (543)
Q Consensus 500 ~~~~~~~~~ 508 (543)
+++|+++|+
T Consensus 83 ~~~l~~~l~ 91 (92)
T 3ic4_A 83 EEKLKELIR 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999986
No 429
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.61 E-value=4.1e-07 Score=88.25 Aligned_cols=102 Identities=8% Similarity=-0.072 Sum_probs=85.4
Q ss_pred HHHHHhhcChHHHHHHHHHHhh-----cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------
Q 009096 239 LMFNISELRFENAVSSAEKAGL-----LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------ 307 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------ 307 (543)
.......|++++|+..++++++ +.|+++.....+++ +|.+|..+|+|++|+.++++++++
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~n---------La~~y~~~g~~~eA~~~~~~aL~i~~~~lG 375 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQ---------AMGVCLYMQDWEGALKYGQKIIKPYSKHYP 375 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHH---------HHHHHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3344457899999999999985 57888888766654 899999999999999999999975
Q ss_pred --CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHH
Q 009096 308 --DSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYTKAL 349 (543)
Q Consensus 308 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 349 (543)
+|+-+..+++||.+|..+|++++|+..|++|+++ .|+++...
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444678999999999999999999999999975 57877543
No 430
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.61 E-value=6e-07 Score=87.34 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhc-----CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLL-----DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-- 307 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-- 307 (543)
......-+...|++++|+..+++++.+ .|+++.....+++ +|.+|..+|+|++|+.+++++++.
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~---------L~~~y~~~g~~~eA~~~~~~~L~i~~ 360 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDC---------AMDACINLGLLEEALFYGTRTMEPYR 360 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHH---------HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHH---------HHHHHHhhccHHHHHHHHHHHHHhHH
Confidence 333345567889999999999999854 5788877666554 899999999999999999999975
Q ss_pred ------CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHH
Q 009096 308 ------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYTK---ALLRRAVSNEK 358 (543)
Q Consensus 308 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~ 358 (543)
+|+-...++++|.+|..+|++++|+.+|++|+++ .|+++. ++.+++.+...
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3444578999999999999999999999999975 677764 34555555543
No 431
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.60 E-value=1.1e-07 Score=88.37 Aligned_cols=141 Identities=11% Similarity=-0.005 Sum_probs=78.3
Q ss_pred HHhcCCcchhhH--HhHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCH-----------HHHHH
Q 009096 74 AISMSPENAAYR--SNRAATLTALGR---LTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQV-----------ENARH 137 (543)
Q Consensus 74 al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------~~A~~ 137 (543)
+....|.+..+| +..|..++..++ ..+|+.+|+++++++|+++.++..++.+|.....+ ..+..
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334445554433 344555554433 35666666666666666666666666655422111 11222
Q ss_pred HhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhh
Q 009096 138 HLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216 (543)
Q Consensus 138 ~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 216 (543)
... ++. .+... ..+...+..+...|++++|+..+++++.++|. ...+..+|.++...|++++|++.|.
T Consensus 266 a~~-a~~~~~~~a--------~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 266 NIV-TLPELNNLS--------IIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHH-TCGGGTTCH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-hcccCCcCH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 111 111 11111 12333344444557777777777777777753 4566677888888888888888888
Q ss_pred cCCCCCCCC
Q 009096 217 NMPKFEHYS 225 (543)
Q Consensus 217 ~~~~~~~~~ 225 (543)
+++.++|..
T Consensus 335 ~AlrL~P~~ 343 (372)
T 3ly7_A 335 TAFNLRPGA 343 (372)
T ss_dssp HHHHHSCSH
T ss_pred HHHhcCCCc
Confidence 888887765
No 432
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=98.59 E-value=3.3e-08 Score=87.75 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=71.1
Q ss_pred CCC-ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHH
Q 009096 425 SPG-VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKS 474 (543)
Q Consensus 425 ~~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~ 474 (543)
.++ .+++.||++||+.|....|.|.++.++|. ++.++.|++|. ...+++.
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ 111 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR 111 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence 345 45668999999999999999999998885 68999998864 2468899
Q ss_pred cCCC-------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 475 EGVR-------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 475 ~~v~-------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
|||. ++|+++++. +|+++....|. +.+++.+.|+.+.
T Consensus 112 ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 112 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK 161 (249)
T ss_dssp HTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred hCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence 9998 899887774 99999887654 6899999998753
No 433
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=98.58 E-value=1.4e-07 Score=78.92 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=67.7
Q ss_pred CCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCc--
Q 009096 426 PGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRT-- 479 (543)
Q Consensus 426 ~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~-- 479 (543)
++++++.||+ +||++|....|.+.++.++++ ++.++.|.+|. ...+++.|||..
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 114 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK 114 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence 5689999998 999999999999999998884 48888888763 246888999987
Q ss_pred ----------ccEEEEEE-CCeEEEEEcCC-C---HHHHHHHHHhc
Q 009096 480 ----------VPTFKIYK-NGEKLKEMINP-S---HQFLEDSANLA 510 (543)
Q Consensus 480 ----------~Pt~~~~~-~g~~~~~~~g~-~---~~~~~~~~~~~ 510 (543)
+|+++++. +|+++..+.|. . .+++.+.|+++
T Consensus 115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 99988884 99999888665 3 35555555543
No 434
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=98.58 E-value=9.7e-08 Score=82.49 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=37.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~ 466 (543)
..+++++.|+.+|||+|+.+.|.+.++.+++++ +.|..++++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 356899999999999999999999999999985 888888774
No 435
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=98.57 E-value=1.7e-07 Score=78.00 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=57.6
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC---------------------cHHHHHHcCCCccc--
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE---------------------SLAIAKSEGVRTVP-- 481 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~---------------------~~~~~~~~~v~~~P-- 481 (543)
+++++.|| ++||++|....|.|.++.+++.+ -.++.|.+|. ...+++.|||...|
T Consensus 36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~ 115 (159)
T 2a4v_A 36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS 115 (159)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence 36888887 89999999999999999887742 1666666542 34688999999999
Q ss_pred -----EEEEEECCeEEEEEcCC
Q 009096 482 -----TFKIYKNGEKLKEMINP 498 (543)
Q Consensus 482 -----t~~~~~~g~~~~~~~g~ 498 (543)
|+++ ++|+++.+..|.
T Consensus 116 g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 116 GSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp CBCCEEEEE-ETTEEEEEEESC
T ss_pred CccceEEEE-cCCEEEEEEccC
Confidence 6777 999999999887
No 436
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=98.56 E-value=2.1e-08 Score=81.27 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=58.9
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc---H----HHHHHcCCCcccEEEEEECC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES---L----AIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~---~----~~~~~~~v~~~Pt~~~~~~g 489 (543)
..+.+.+... . ++.|+++||++|+.+.+.|+++. +.|..+|++.. + ++++.+|+.++|+++ .||
T Consensus 40 ~~~~~~i~~~-~-Vvvf~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~G 110 (146)
T 2ht9_A 40 NQIQETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNG 110 (146)
T ss_dssp HHHHHHHHHC-S-EEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ETT
T ss_pred HHHHHHhcCC-C-EEEEECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--ECC
Confidence 4455555433 3 34499999999999999999874 34556666644 3 378899999999984 599
Q ss_pred eEEEEE---cCC-CHHHHHHHHHhc
Q 009096 490 EKLKEM---INP-SHQFLEDSANLA 510 (543)
Q Consensus 490 ~~~~~~---~g~-~~~~~~~~~~~~ 510 (543)
+.+... .+. ...+|.++|+..
T Consensus 111 ~~igG~d~l~~l~~~g~L~~~L~~~ 135 (146)
T 2ht9_A 111 TFIGGATDTHRLHKEGKLLPLVHQC 135 (146)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred EEEeCchHHHHHHHcChHHHHHHHc
Confidence 876532 223 455677777764
No 437
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.54 E-value=9.3e-07 Score=67.93 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN---SIEDCNVALRIQ-P-NYTKALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 367 (543)
....+.+.|.+.+..++.+..+.+++|+++.+..+... ++..++..+..+ | ..-+.+|.+|..++++|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45566777787777788889999999999999888766 999999999877 5 456899999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 368 DYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 368 ~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+++.+++..|+|.++......+...+.
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999877766665554
No 438
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=98.52 E-value=3.5e-07 Score=79.58 Aligned_cols=87 Identities=8% Similarity=-0.115 Sum_probs=66.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC--------c---HHHHH------HcCCC-------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE--------S---LAIAK------SEGVR------- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~--------~---~~~~~------~~~v~------- 478 (543)
.++++++.||++||++|+ ..|.|.++.++|. ++.++.|.++. . ...++ ++++.
T Consensus 55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~ 133 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKG 133 (215)
T ss_dssp TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeee
Confidence 467999999999999999 7899999999885 48888887642 1 22344 55431
Q ss_pred -------------------------c--------------c---cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 479 -------------------------T--------------V---PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 479 -------------------------~--------------~---Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+ + ||.+++ ++|+++.++.|. +++++++.|++++.
T Consensus 134 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~ll~ 211 (215)
T 2i3y_A 134 DVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 211 (215)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred ccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1 1 565555 699999999987 89999999988764
No 439
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=98.50 E-value=3e-07 Score=67.38 Aligned_cols=75 Identities=25% Similarity=0.348 Sum_probs=58.4
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc-----CCCcccEEEEEECCeEEEEEcCCCHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE-----GVRTVPTFKIYKNGEKLKEMINPSHQF 502 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 502 (543)
..++.|+.+|||.|...+..|++ .++.|..+|++.+++..+.+ |.+++|++++ .||+.+ +|++.++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~-----~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l---~~~~~~e 74 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTA-----NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTL---TNPSADE 74 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHH-----TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEE---ESCCHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHh-----cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEE---eCCCHHH
Confidence 34677899999999999998877 36778889998876544332 7899998754 678653 4889999
Q ss_pred HHHHHHhcC
Q 009096 503 LEDSANLAP 511 (543)
Q Consensus 503 ~~~~~~~~~ 511 (543)
|++.|.+..
T Consensus 75 l~~~L~el~ 83 (92)
T 2lqo_A 75 VKAKLVKIA 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998754
No 440
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=98.48 E-value=3.8e-07 Score=76.69 Aligned_cols=91 Identities=4% Similarity=-0.063 Sum_probs=70.8
Q ss_pred CCceeeeeeCCCCc-cccchhHhHHHHHhhC----CCeEEEEEeCcC-------------------------------cH
Q 009096 426 PGVSLVHFKEASSE-KCEEISPFVNLLCVRY----PYVHFFKVDVEE-------------------------------SL 469 (543)
Q Consensus 426 ~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~----~~~~~~~~d~~~-------------------------------~~ 469 (543)
++++++.||++||+ .|....|.+.++.+++ .++.++.|.+|. ..
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 68999999999997 6999999999998887 347777776541 13
Q ss_pred HHHHHcCC---------CcccEEEEE-ECCeEEEEEcCC--CHHHHHHHHHhcCCCCCC
Q 009096 470 AIAKSEGV---------RTVPTFKIY-KNGEKLKEMINP--SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 470 ~~~~~~~v---------~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~~~~~~~~~~ 516 (543)
.+++.||+ ...|+++++ ++|+++.++.|. +++++.+.|++...++..
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~~ 166 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGEGHH 166 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTCSCT
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhccccc
Confidence 46666664 345777777 599999988886 899999999988766543
No 441
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=98.46 E-value=3.7e-07 Score=80.09 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.++| .++.++.|.+|. ...+++
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 134 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK 134 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence 4578999999 999999999999999998887 467777776653 125778
Q ss_pred HcCC-----CcccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGV-----RTVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v-----~~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.||| ..+|+++++. +|+++.+..|. +.+++.+.|+.+.
T Consensus 135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 8898 4789988885 99999987662 5788888888754
No 442
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=98.42 E-value=3.2e-07 Score=75.94 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=59.6
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCC--
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~-- 478 (543)
.++++++.|| ++||++|....|.+.++.+++. ++.++.|..|. ...++++|||.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~ 108 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE 108 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence 3678899998 8999999999999988888874 47787777664 23578888874
Q ss_pred ---------cccEEEEE-ECCeEEEEEcC-----C-CHHHHHHHHHhc
Q 009096 479 ---------TVPTFKIY-KNGEKLKEMIN-----P-SHQFLEDSANLA 510 (543)
Q Consensus 479 ---------~~Pt~~~~-~~g~~~~~~~g-----~-~~~~~~~~~~~~ 510 (543)
..|+++++ ++|+++.+..| . +.+++.+.|+.+
T Consensus 109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 45766666 59999887654 2 567888888754
No 443
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=98.42 E-value=7.8e-07 Score=67.48 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----HHHH----HHcCCCcccEEEEEECC-eEEEEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----LAIA----KSEGVRTVPTFKIYKNG-EKLKEM 495 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----~~~~----~~~~v~~~Pt~~~~~~g-~~~~~~ 495 (543)
....++.|+++|||+|+.+.+.|+++. +.+-.+|++.. .++. +..|+.++|++++ +| +. +
T Consensus 20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~-----i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~~---i 89 (103)
T 3nzn_A 20 DRGKVIMYGLSTCVWCKKTKKLLTDLG-----VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEKA---I 89 (103)
T ss_dssp CCSCEEEEECSSCHHHHHHHHHHHHHT-----BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTEE---E
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcC-----CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCEE---E
Confidence 345577799999999999999999874 34455565531 2232 3468999999876 44 43 4
Q ss_pred cCCCHHHHHHHHH
Q 009096 496 INPSHQFLEDSAN 508 (543)
Q Consensus 496 ~g~~~~~~~~~~~ 508 (543)
.|+++++|+++|+
T Consensus 90 gg~~~~~l~~~L~ 102 (103)
T 3nzn_A 90 VGFKEKEIRESLG 102 (103)
T ss_dssp ESCCHHHHHHHTT
T ss_pred EcCCHHHHHHHhC
Confidence 4789999998874
No 444
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=98.40 E-value=6.8e-07 Score=77.43 Aligned_cols=87 Identities=7% Similarity=-0.132 Sum_probs=65.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC--------c---HHHHH------HcCCC-------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE--------S---LAIAK------SEGVR------- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~--------~---~~~~~------~~~v~------- 478 (543)
.+++++|.||++||++| ...|.|.++.++|. ++.++.|.++. . ...++ ++++.
T Consensus 37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 115 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG 115 (207)
T ss_dssp TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence 46799999999999999 67899999999885 48888887541 1 22334 45431
Q ss_pred -------------------------c--------------c---cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 479 -------------------------T--------------V---PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 479 -------------------------~--------------~---Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+ + ||.+++ ++|+++.++.|. +++++++.|++++.
T Consensus 116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll~ 193 (207)
T 2r37_A 116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR 193 (207)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 1 565555 699999999987 89999999887653
No 445
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=98.37 E-value=3.6e-07 Score=73.99 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV--------------------------------------- 465 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~--------------------------------------- 465 (543)
..+.+++.|.-++||.|+.+.+.+++ ++++++...+.
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~----l~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~ 88 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEK----MTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG 88 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTT----CCSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhh----cCceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence 45788999999999999999998764 35555443321
Q ss_pred -------cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 466 -------EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 466 -------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
+++.++++++||+++||+++ .||+ ++.|+ +.++|.+.|++...+
T Consensus 89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~~~ 140 (147)
T 3gv1_A 89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQQE 140 (147)
T ss_dssp CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHHHh
Confidence 12356889999999999998 7887 46698 999999999987653
No 446
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=98.37 E-value=4.8e-07 Score=66.66 Aligned_cols=57 Identities=11% Similarity=0.255 Sum_probs=47.4
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc--CcHHHHHHc-CCCcccEEEEEECCeEE
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE--ESLAIAKSE-GVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~--~~~~~~~~~-~v~~~Pt~~~~~~g~~~ 492 (543)
.++.|+++||++|+.+.+.|++. ++.|..+|++ ..+++.+.+ |+.++|+++ .||+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i 66 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV 66 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred eEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence 46789999999999999999886 3667888888 567788889 999999984 488754
No 447
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=98.35 E-value=8.5e-07 Score=75.22 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=64.6
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCc--
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRT-- 479 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~-- 479 (543)
++++++.|| +.||++|....|.|.++.+++. ++.++.|.+|. ...+++.|||..
T Consensus 51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~ 130 (179)
T 3ixr_A 51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK 130 (179)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence 567888888 9999999999999999998884 48888887764 236888899864
Q ss_pred ----------ccEEEEE-ECCeEEEEEcCC-C---HHHHHHHHHh
Q 009096 480 ----------VPTFKIY-KNGEKLKEMINP-S---HQFLEDSANL 509 (543)
Q Consensus 480 ----------~Pt~~~~-~~g~~~~~~~g~-~---~~~~~~~~~~ 509 (543)
.|+++++ ++|+++..+.+. . .+++.+.|++
T Consensus 131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA 175 (179)
T ss_dssp CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 5877777 499999888665 3 4455555554
No 448
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=98.35 E-value=2.8e-06 Score=66.35 Aligned_cols=93 Identities=10% Similarity=0.138 Sum_probs=77.3
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
..+.+.+.+...+....+++|-|+.+||++| .+.|.++++.++++.|+.++ +.+++..+++. .|++++|+++.
T Consensus 24 ~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~---~~~v~~~~~v~-~~~vvlfkkfd 96 (124)
T 2l4c_A 24 TWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGIST---DSEVLTHYNIT-GNTICLFRLVD 96 (124)
T ss_dssp EECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEEC---CHHHHHHTTCC-SSCEEEEETTT
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEEC---hHHHHHHcCCC-CCeEEEEEcCC
Confidence 3466777888888888999999999999999 67899999999889998776 47799999998 89999999874
Q ss_pred -EEEEEcC----C-CHHHHHHHHHhc
Q 009096 491 -KLKEMIN----P-SHQFLEDSANLA 510 (543)
Q Consensus 491 -~~~~~~g----~-~~~~~~~~~~~~ 510 (543)
....+.| . +.+.|.+||+..
T Consensus 97 e~~~~~~g~~~~~~~~~~L~~FI~~n 122 (124)
T 2l4c_A 97 NEQLNLEDEDIESIDATKLSRFIEIN 122 (124)
T ss_dssp TEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred CCceeecCcccCCCCHHHHHHHHHHh
Confidence 3445565 4 999999999864
No 449
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=98.35 E-value=2.6e-07 Score=72.01 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=52.5
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccch-hHhHHHHHhhCCCeEEEEEeCcCcH-------HHHHHcCCCcccEEEEEEC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEI-SPFVNLLCVRYPYVHFFKVDVEESL-------AIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~~~~~~~~~d~~~~~-------~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.+... .++.|+++||++|+.+ .+.|+++.. +++.|..+|++..+ ++.+.+|+.++|++ |.|
T Consensus 16 ~~~~~~i~~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~ 89 (118)
T 3c1r_A 16 KHVKDLIAEN--EIFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YIN 89 (118)
T ss_dssp HHHHHHHHHS--SEEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHccC--cEEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 4444444333 3666999999999999 888876541 34778888887653 58889999999987 669
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 90 g~~ig 94 (118)
T 3c1r_A 90 GKHIG 94 (118)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 98764
No 450
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=98.34 E-value=1.6e-06 Score=72.51 Aligned_cols=84 Identities=8% Similarity=0.092 Sum_probs=64.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCc-
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~- 479 (543)
.++++++.|| +.||++|....|.|.++.+++.++.++.|.+|. ...+++.|||..
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 121 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQ 121 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEEC
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCceec
Confidence 3578999999 799999999999999999888667777776542 245788888864
Q ss_pred --------ccEEEEEE-CCeEEEEEcCC---CHHHHHHHHH
Q 009096 480 --------VPTFKIYK-NGEKLKEMINP---SHQFLEDSAN 508 (543)
Q Consensus 480 --------~Pt~~~~~-~g~~~~~~~g~---~~~~~~~~~~ 508 (543)
.|+++++. +|+++.+..|. ....+++.++
T Consensus 122 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~ 162 (165)
T 1q98_A 122 TGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALA 162 (165)
T ss_dssp SSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred ccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHH
Confidence 49888885 99999998752 3444555554
No 451
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=98.33 E-value=2.2e-06 Score=71.43 Aligned_cols=85 Identities=5% Similarity=-0.030 Sum_probs=66.0
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.++++++.||+ .||++|....|.+.++.+++.++.++.|..|. ...+++.|||.
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 120 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLIN 120 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCT
T ss_pred CCCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCccc
Confidence 35789999995 99999999999999999888668777776552 23577788887
Q ss_pred --c--ccEEEEEE-CCeEEEEEcCC------CHHHHHHHHHh
Q 009096 479 --T--VPTFKIYK-NGEKLKEMINP------SHQFLEDSANL 509 (543)
Q Consensus 479 --~--~Pt~~~~~-~g~~~~~~~g~------~~~~~~~~~~~ 509 (543)
+ .|+++++. +|+++.+..|. +.+++.+.|++
T Consensus 121 ~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 121 EWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred cCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 3 38888885 99999998763 33677777764
No 452
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=98.33 E-value=8.9e-07 Score=67.46 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=50.7
Q ss_pred hhhhhccCCCCceeeeeeC-----CCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEE
Q 009096 417 EKFKAAISSPGVSLVHFKE-----ASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~-----~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~ 487 (543)
+.+.+.+..+ ++++ |+. +||++|+.+.+.|+++ ++.|..+|++.++. +...+|+.++|++ |.
T Consensus 8 ~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i 78 (105)
T 2yan_A 8 ERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--YV 78 (105)
T ss_dssp HHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHHHHHHH-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EE
T ss_pred HHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EE
Confidence 3445555544 4444 666 9999999999999887 36788899987765 4556799999998 46
Q ss_pred CCeEEE
Q 009096 488 NGEKLK 493 (543)
Q Consensus 488 ~g~~~~ 493 (543)
||+.+.
T Consensus 79 ~g~~ig 84 (105)
T 2yan_A 79 KGELVG 84 (105)
T ss_dssp TTEEEE
T ss_pred CCEEEe
Confidence 898654
No 453
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=98.32 E-value=1.3e-06 Score=65.44 Aligned_cols=62 Identities=10% Similarity=0.213 Sum_probs=48.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc-----CCCcccEEEEEECCeEEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE-----GVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~ 493 (543)
.....++.|+.+||+.|+.+.++|+++ ++.|..+|++..++..+.+ |+.++|++ |.||+.+.
T Consensus 13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~-----~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 13 AVSAKIEIYTWSTCPFCMRALALLKRK-----GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCCCEEEEECTTCHHHHHHHHHHHHH-----TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred cCCCCEEEEEcCCChhHHHHHHHHHHC-----CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 345567779999999999999999986 4667778888876655444 99999987 56897654
No 454
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=98.32 E-value=1.2e-06 Score=76.41 Aligned_cols=87 Identities=14% Similarity=0.011 Sum_probs=69.4
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.+++ .++.++.|.+|. ...+++
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 126 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 126 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence 3578999999 999999999999999998887 458887776652 135778
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. .+|+++++. +|+++.+..|. +.+++.+.|+.+.
T Consensus 127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 88984 699888885 99999987653 5688888888754
No 455
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=98.29 E-value=1.9e-06 Score=73.59 Aligned_cols=87 Identities=10% Similarity=-0.075 Sum_probs=68.9
Q ss_pred CCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 426 PGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 426 ~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
++++++.||+ +||++|....|.|.++.+++. ++.++.|.+|. ...+++.|||
T Consensus 30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv 109 (186)
T 1n8j_A 30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 109 (186)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence 5789999995 999999999999999988774 57777776653 2346778888
Q ss_pred C------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcCC
Q 009096 478 R------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAPS 512 (543)
Q Consensus 478 ~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~~ 512 (543)
. .+|+++++. +|+++.+..|. +.+++.+.|+.+..
T Consensus 110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~ 156 (186)
T 1n8j_A 110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 156 (186)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 6 379888885 99999987763 47888888887653
No 456
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=98.28 E-value=2.8e-06 Score=71.48 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=65.6
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----------------------HHHHHHcCCCc--
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----------------------LAIAKSEGVRT-- 479 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----------------------~~~~~~~~v~~-- 479 (543)
++++++.|| ++||++|....|.+.++.+++.++.++.|.+|.. ..+ +.|||..
T Consensus 47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~ 125 (171)
T 2yzh_A 47 DVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGE 125 (171)
T ss_dssp SSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCS
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecc
Confidence 568999999 7999999999999999998886688877766531 235 6677652
Q ss_pred -------ccEEEEEE-CCeEEEEEcC-----C-CHHHHHHHHHhc
Q 009096 480 -------VPTFKIYK-NGEKLKEMIN-----P-SHQFLEDSANLA 510 (543)
Q Consensus 480 -------~Pt~~~~~-~g~~~~~~~g-----~-~~~~~~~~~~~~ 510 (543)
+|+++++. +|+++.+..| . +.+++.+.|+++
T Consensus 126 ~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 126 GALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred cccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 68888885 9999998864 2 567888888764
No 457
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=98.28 E-value=5.8e-07 Score=74.87 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=64.9
Q ss_pred CCCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCC-
Q 009096 424 SSPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVR- 478 (543)
Q Consensus 424 ~~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~- 478 (543)
..++++++.|| ++||++|....|.|.++.+++. ++.++.|..|. ...+++.|||.
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~ 110 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH 110 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcc
Confidence 35677888887 9999999999999988888874 47888787663 24688889984
Q ss_pred ---------cccEEEEE-ECCeEEEEEcCC------CHHHHHHHHHhc
Q 009096 479 ---------TVPTFKIY-KNGEKLKEMINP------SHQFLEDSANLA 510 (543)
Q Consensus 479 ---------~~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~~ 510 (543)
..|+++++ ++|+++....+. +.+++.+.|+++
T Consensus 111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 158 (164)
T ss_dssp EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36776666 599998876542 466777766654
No 458
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=98.27 E-value=1.9e-06 Score=74.32 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=62.5
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-------------------------------------- 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-------------------------------------- 466 (543)
.++.++.|+..|||+|..+.|.+.++.+++++ +.|..+.+.
T Consensus 22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~~~~ 101 (195)
T 2znm_A 22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIR 101 (195)
T ss_dssp SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999875 666554431
Q ss_pred ------------------C------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 467 ------------------E------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 467 ------------------~------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
. +..++.++||.++||+++ ||+.+ +.|. +.+++.+.|+.
T Consensus 102 ~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~~~~~~l~~~i~~ 177 (195)
T 2znm_A 102 LENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIV--GGKYR--VIFNNGFDGGVHTIKE 177 (195)
T ss_dssp TTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEE--ECCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE--CCEEE--EcCCCCHHHHHHHHHH
Confidence 0 123577889999999544 88753 4576 88888888876
Q ss_pred cC
Q 009096 510 AP 511 (543)
Q Consensus 510 ~~ 511 (543)
.+
T Consensus 178 ~l 179 (195)
T 2znm_A 178 LV 179 (195)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 459
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=98.27 E-value=2.7e-06 Score=73.43 Aligned_cols=84 Identities=7% Similarity=0.062 Sum_probs=63.9
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.++++++.|| +.||++|....|.|.++.+++.++.++.|..|. ...+++.|||.
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~ 156 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAIT 156 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEEC
T ss_pred CCCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCceee
Confidence 3578999999 689999999999999999999778888777653 24577888886
Q ss_pred -------cccEEEEE-ECCeEEEEEcCC---CHHHHHHHHH
Q 009096 479 -------TVPTFKIY-KNGEKLKEMINP---SHQFLEDSAN 508 (543)
Q Consensus 479 -------~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~ 508 (543)
.+|+++++ ++|+++.+..+. ...++++.|+
T Consensus 157 ~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~ 197 (200)
T 3zrd_A 157 EGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALA 197 (200)
T ss_dssp SSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred cccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHH
Confidence 36988888 599999887653 3334444444
No 460
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=98.27 E-value=2.8e-06 Score=72.84 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~ 465 (543)
.+++++.|+..|||+|+.+.|.+.++.+++++ +.|..+++
T Consensus 24 ~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~ 64 (193)
T 3hz8_A 24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV 64 (193)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 56789999999999999999999999999986 77766665
No 461
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=98.24 E-value=2.9e-06 Score=70.93 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCc-
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~- 479 (543)
.++++++.|| +.||++|....|.+.++.++ .++.++.|..|. ...+++.|||..
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 123 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVME 123 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEET
T ss_pred CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccc
Confidence 3578899999 78999999999999999887 777777776553 235778888875
Q ss_pred -----ccEEEEE-ECCeEEEEEcCC------CHHHHHHHHHh
Q 009096 480 -----VPTFKIY-KNGEKLKEMINP------SHQFLEDSANL 509 (543)
Q Consensus 480 -----~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~ 509 (543)
+|+++++ ++|+++.+..+. +.+++.+.|++
T Consensus 124 ~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 124 ELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp TTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred cCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 8988888 499999885432 45677777664
No 462
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=98.24 E-value=2.6e-06 Score=76.21 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCceeeeee-CCCCcccc-chhHhHHHHHhhC--CCe-EEEEEeCcC----------------------cHHHHHHcCC
Q 009096 425 SPGVSLVHFK-EASSEKCE-EISPFVNLLCVRY--PYV-HFFKVDVEE----------------------SLAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~-~~~p~l~~l~~~~--~~~-~~~~~d~~~----------------------~~~~~~~~~v 477 (543)
.++++++.|| ++||++|. ...|.|.++.+++ .++ .++.|..|. ...+++.|||
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 111 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM 111 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence 3568899998 99999999 8999999998887 358 888887763 1357888888
Q ss_pred C-----------cccEEEEEECCeEEEEEcCC
Q 009096 478 R-----------TVPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 478 ~-----------~~Pt~~~~~~g~~~~~~~g~ 498 (543)
. +.|+.+++++|+++....|.
T Consensus 112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~ 143 (241)
T 1nm3_A 112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEP 143 (241)
T ss_dssp EEECTTTTCCEEECCEEEEEETTEEEEEEECC
T ss_pred eeecccccCcccceeEEEEEECCEEEEEEEec
Confidence 6 35865555999999988875
No 463
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=98.23 E-value=2e-06 Score=72.86 Aligned_cols=82 Identities=17% Similarity=0.043 Sum_probs=62.0
Q ss_pred ceeeeeeCCCCccccc-hhHhHHHHHhhC--CCeE-EEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 428 VSLVHFKEASSEKCEE-ISPFVNLLCVRY--PYVH-FFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~-~~p~l~~l~~~~--~~~~-~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.+++.||++||++|.. -.|.|.++.+++ .++. ++.|..|. ...++++|||.
T Consensus 59 vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 138 (184)
T 3uma_A 59 VVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEID 138 (184)
T ss_dssp EEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEE
T ss_pred EEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCcee
Confidence 5566778999999999 699999998887 3577 88887764 13578888885
Q ss_pred ---------cccEEEEEECCeEEEEEcCC-----CHHHHHHHHHh
Q 009096 479 ---------TVPTFKIYKNGEKLKEMINP-----SHQFLEDSANL 509 (543)
Q Consensus 479 ---------~~Pt~~~~~~g~~~~~~~g~-----~~~~~~~~~~~ 509 (543)
+.|+.+++++|+++....|. +.+.++++|++
T Consensus 139 ~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 139 LSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL 183 (184)
T ss_dssp EGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred ccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence 34766666999999988764 35667777664
No 464
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=98.22 E-value=3.9e-06 Score=70.88 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=60.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC--CC-eEEEEEeCc------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY--PY-VHFFKVDVE------------------------------------ 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~-~~~~~~d~~------------------------------------ 466 (543)
.+..++.|+..+||+|..+.|.+.++.++| ++ ++|...++.
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~ 106 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 106 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcCh
Confidence 456788999999999999999999888887 54 666654431
Q ss_pred ------------------------------CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 467 ------------------------------ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 467 ------------------------------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+...+++++||.++||+++ ||+. +.|. +.+++++.|++
T Consensus 107 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~~---~~G~~~~~~l~~~i~~ 175 (175)
T 1z6m_A 107 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK 175 (175)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCEE---ccCCCCHHHHHHHhcC
Confidence 0123467789999999655 8974 4687 99999998863
No 465
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=98.18 E-value=6.2e-06 Score=70.33 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=65.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--C-----------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--E----------------------------------- 467 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~----------------------------------- 467 (543)
..++++.|+.-.||+|+.+.|.+.++.+++++ +.|..+.+. .
T Consensus 21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (184)
T 4dvc_A 21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR 100 (184)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999975 555544321 1
Q ss_pred --------------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHH
Q 009096 468 --------------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 468 --------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
...+++++||.|+||+++ ||+.+-...|. +.+++.+.|+
T Consensus 101 ~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i~ 178 (184)
T 4dvc_A 101 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLVN 178 (184)
T ss_dssp CCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHHH
T ss_pred hccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHHH
Confidence 024678889999999876 99865444556 8999999998
Q ss_pred hcCC
Q 009096 509 LAPS 512 (543)
Q Consensus 509 ~~~~ 512 (543)
.+++
T Consensus 179 ~Ll~ 182 (184)
T 4dvc_A 179 YLLT 182 (184)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7654
No 466
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=98.18 E-value=4e-06 Score=69.94 Aligned_cols=74 Identities=12% Similarity=-0.006 Sum_probs=56.6
Q ss_pred CCCceeeeee-CCCCccccc-hhHhHHHHHhhC--CCe-EEEEEeCcC-----------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEE-ISPFVNLLCVRY--PYV-HFFKVDVEE-----------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~-~~p~l~~l~~~~--~~~-~~~~~d~~~-----------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|.. -.|.|.++.+++ .++ .++.|..|. ...+++.||
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g 109 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD 109 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence 3456777775 999999999 899998888777 458 888887653 235788888
Q ss_pred CCcc-----------cEEEEEECCeEEEEEcCC
Q 009096 477 VRTV-----------PTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 477 v~~~-----------Pt~~~~~~g~~~~~~~g~ 498 (543)
|... |+++++++|+++...++.
T Consensus 110 v~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~ 142 (167)
T 2wfc_A 110 MELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP 142 (167)
T ss_dssp CEECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred CccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence 8754 875555999999987774
No 467
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.17 E-value=6.1e-05 Score=74.90 Aligned_cols=161 Identities=13% Similarity=0.031 Sum_probs=118.3
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhc--CCcchhhHHhHHHHHHHcC---------CHHHHHHHHHHHHhcC-CCChh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISM--SPENAAYRSNRAATLTALG---------RLTEAVSDCEEAVRLD-PGYNR 117 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~ 117 (543)
.+...-..+.+.|+.++|+.+|+++.+. .| +...|..+-.++...+ ..++|.+.|++..... +-+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3455567788999999999999999875 44 4556666655555443 3788999999887753 22567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
.|..+...|.+.|+.++|...|+++.+ .|+.. .+..+...+.+.|+.++|...+++..+.+-......
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR---------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 888899999999999999999987654 23322 244555666778888888888888877765555677
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
+..+...+.+.|+.++|.+++++..+
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 77778888888888888888777643
No 468
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=98.16 E-value=2.4e-06 Score=65.49 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=48.6
Q ss_pred hhhhccCCCCceeeeeeC-----CCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEEC
Q 009096 418 KFKAAISSPGVSLVHFKE-----ASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 418 ~~~~~i~~~~~~lv~f~~-----~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~ 488 (543)
.+.+.+...+ ++ .|+. +||++|+.+.+.|+++ ++.|..+|++.+++ +....|..++|++ |.|
T Consensus 7 ~~~~~i~~~~-vv-vy~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--fi~ 77 (109)
T 1wik_A 7 GLKVLTNKAS-VM-LFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--YVR 77 (109)
T ss_dssp CHHHHHTTSS-EE-EEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--ECS
T ss_pred HHHHHhccCC-EE-EEEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE--EEC
Confidence 3445554443 44 4666 9999999999999875 57788999987754 4556689999984 568
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 78 g~~ig 82 (109)
T 1wik_A 78 GDLVG 82 (109)
T ss_dssp SSEEE
T ss_pred CEEEc
Confidence 87654
No 469
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=98.15 E-value=4.1e-06 Score=74.39 Aligned_cols=86 Identities=14% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.||+ +||++|....|.|.++.++|. ++.++.|.+|. ...+++
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~ 155 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK 155 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence 46789999999 999999999999999999884 58888887663 135788
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhc
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLA 510 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~ 510 (543)
.|||. .+|+++++. +|+++.+..+. +.+++.+.|+.+
T Consensus 156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l 204 (240)
T 3qpm_A 156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF 204 (240)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 89998 689888884 99999886652 567888877764
No 470
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=98.15 E-value=4.1e-06 Score=60.48 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=50.4
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH----HHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL----AIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
++.|+++||++|+.+.+.+++. ++.|..+|++..+ ++.+.+|+.++|+++ .||+.+. |. ++|.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~---g~--~~i~~ 70 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG---GY--DDLYA 70 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE---SH--HHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe---CH--HHHHH
Confidence 5678999999999999999875 4566777877643 356788999999984 5887653 43 45666
Q ss_pred HHHh
Q 009096 506 SANL 509 (543)
Q Consensus 506 ~~~~ 509 (543)
+++.
T Consensus 71 ~~~~ 74 (82)
T 1fov_A 71 LDAR 74 (82)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 6553
No 471
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=98.14 E-value=1.6e-06 Score=67.07 Aligned_cols=68 Identities=18% Similarity=0.385 Sum_probs=48.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----H----HHHHHcCCCcccEEEEEEC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----L----AIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~----~~~~~~~v~~~Pt~~~~~~ 488 (543)
+.+.+.+...+ ++.|+++|||+|+.+.+.|+++ ++.|..+|++.. + .+....|+.++|++ |.|
T Consensus 10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~ 80 (113)
T 3rhb_A 10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRL-----GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVC 80 (113)
T ss_dssp HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHc-----CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 44445554443 6679999999999999999885 344455666542 2 25566799999998 569
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 81 g~~ig 85 (113)
T 3rhb_A 81 GKHIG 85 (113)
T ss_dssp TEEEE
T ss_pred CEEEc
Confidence 98765
No 472
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=98.14 E-value=3.1e-06 Score=71.97 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=63.5
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC--------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-------------------------------------- 467 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-------------------------------------- 467 (543)
+++++|.|+..|||+|+.+.|.+.++.+++ ++.|.++.+.-
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~ 100 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGE 100 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCT
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999998877 55544444310
Q ss_pred ----------------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 468 ----------------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 468 ----------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
....+.++||.++||+++ ||+.+-...|. +.+++.+.
T Consensus 101 ~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPtfvv--ng~~~v~~~Ga~~~e~~~~~ 178 (185)
T 3feu_A 101 GTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIADT 178 (185)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCEEEE--CCEEEEecCCCCCHHHHHHH
Confidence 012345668899999987 89865555788 99999999
Q ss_pred HHhcC
Q 009096 507 ANLAP 511 (543)
Q Consensus 507 ~~~~~ 511 (543)
|+..+
T Consensus 179 i~~ll 183 (185)
T 3feu_A 179 IRYLL 183 (185)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 473
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=98.13 E-value=5e-06 Score=69.58 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=60.3
Q ss_pred ceeeeeeCCCCcccc-chhHhHHHHHhhCC--CeEEEE-EeCcC-----------------------cHHHHHHcCCC--
Q 009096 428 VSLVHFKEASSEKCE-EISPFVNLLCVRYP--YVHFFK-VDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~-~~~p~l~~l~~~~~--~~~~~~-~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.+++.||++||++|. .-.|.|.++.+++. ++.++. +..|. ...+++.|||.
T Consensus 46 vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 125 (173)
T 3mng_A 46 GVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLD 125 (173)
T ss_dssp EEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCC
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcc
Confidence 445566799999999 58899998888773 466664 65543 23688889986
Q ss_pred -----------cccEEEEEECCeEEEEEcCC-----CHHHHHHHHHh
Q 009096 479 -----------TVPTFKIYKNGEKLKEMINP-----SHQFLEDSANL 509 (543)
Q Consensus 479 -----------~~Pt~~~~~~g~~~~~~~g~-----~~~~~~~~~~~ 509 (543)
..|+++++++|+++...++. +.++..+.|++
T Consensus 126 ~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~ 172 (173)
T 3mng_A 126 DSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 172 (173)
T ss_dssp STTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred cccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence 35887777799999887763 56777777764
No 474
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=98.13 E-value=3.6e-06 Score=62.33 Aligned_cols=58 Identities=10% Similarity=0.285 Sum_probs=45.6
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
.++.|+.+||++|+.+.+.|++. ++.|..+|++.++. +.+.+++.++|++ |.||+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~ 68 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG 68 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 46789999999999999999874 46778888887654 4557899999975 55887544
No 475
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=98.13 E-value=6.3e-06 Score=68.51 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=58.3
Q ss_pred CCCceeeeee-CCCCcccc-chhHhHHHHHhhC--CCeE-EEEEeCcC-----------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCE-EISPFVNLLCVRY--PYVH-FFKVDVEE-----------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~-~~~p~l~~l~~~~--~~~~-~~~~d~~~-----------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|. ...|.|.++.+++ .++. ++.|..|. ...+++.||
T Consensus 34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG 113 (162)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence 4578999999 89999999 8999999888777 3577 77766542 245788888
Q ss_pred CC-----------cccEEEEEECCeEEEEEcCC
Q 009096 477 VR-----------TVPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 477 v~-----------~~Pt~~~~~~g~~~~~~~g~ 498 (543)
|. .+|+++++.+|+++....|.
T Consensus 114 v~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 114 LELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146 (162)
T ss_dssp CEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred cccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence 86 27987777899999887775
No 476
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.12 E-value=0.00019 Score=71.40 Aligned_cols=170 Identities=10% Similarity=-0.037 Sum_probs=111.9
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
.....+.+.|+.++|+..|++..+.+-..+...|..+-.++...+...+
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------------------------------- 79 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------------------------------- 79 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------------------------------
Confidence 3345667788888888888887776544444555554444433322111
Q ss_pred HHhhcChHHHHHHHHHHhhc--CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCChhHHhHH
Q 009096 242 NISELRFENAVSSAEKAGLL--DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD-SYNSILYCNR 318 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 318 (543)
....+..++|.+.|++.... .|+.... ..+-..+.+.|++++|.++|++..+.. .-+...|..+
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty-------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATF-------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHH-------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 01223456677777776543 3443332 124566778888888888888876642 2246778888
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQ-PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
-..|.+.|+.++|.+.|++..+.. .-+...|..+-.++.+.|+.++|.+.+++..+.
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 888888888888888888887653 224677888888888888888888888887664
No 477
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=98.11 E-value=4.8e-06 Score=71.13 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeCc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDVE 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~~ 466 (543)
..++++.|+..|||+|+.+.|.+ .++.+++++ ++|..+++.
T Consensus 14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 36889999999999999999987 688888875 877777654
No 478
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=98.08 E-value=5e-06 Score=69.72 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=58.4
Q ss_pred CceeeeeeCCCCccccch-hHhHHHHHhhC--CCeE-EEEEeCcC-----------------------cHHHHHHcCCCc
Q 009096 427 GVSLVHFKEASSEKCEEI-SPFVNLLCVRY--PYVH-FFKVDVEE-----------------------SLAIAKSEGVRT 479 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~--~~~~-~~~~d~~~-----------------------~~~~~~~~~v~~ 479 (543)
..+++.||++||++|..- .|.|.++.+++ .++. ++.|+.+. ...+++.|||..
T Consensus 45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~ 124 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTT 124 (171)
T ss_dssp EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEE
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCcc
Confidence 467789999999999998 99999888877 3577 88887653 235677778752
Q ss_pred -----------cc-EEEEEECCeEEEEEcCC-C----HHHHHHHHH
Q 009096 480 -----------VP-TFKIYKNGEKLKEMINP-S----HQFLEDSAN 508 (543)
Q Consensus 480 -----------~P-t~~~~~~g~~~~~~~g~-~----~~~~~~~~~ 508 (543)
.| |+++. +|+++....|. . ..+..+.|+
T Consensus 125 ~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~~~~~~~~~il~ 169 (171)
T 2pwj_A 125 DLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSDVKVSGAETILG 169 (171)
T ss_dssp ECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTCCSSSSHHHHHH
T ss_pred ccccccCCcccceeEEEEE-CCEEEEEEeecCCCCCcccCHHHHHh
Confidence 34 45554 99999988875 2 345555554
No 479
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=98.05 E-value=1.9e-05 Score=67.87 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=62.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-------------------------------------- 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-------------------------------------- 466 (543)
.+..++.|+..+||+|..+.|.+.++.+++++ +.|..+.+.
T Consensus 25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~a~~a~~~a~~~~~~~~~~~~lf~~~~~~~~~ 104 (193)
T 2rem_A 25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFARAYLAADVLGVAKRSHTAMFEAIHEKGSV 104 (193)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECCCSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcccCCCcHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhccc
Confidence 34578999999999999999999999999975 666554431
Q ss_pred -----C---------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHHHH
Q 009096 467 -----E---------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508 (543)
Q Consensus 467 -----~---------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~ 508 (543)
. ...++.++||.++||+++ ||+.+ +.|.+.+++.+.|+
T Consensus 105 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~~~~~l~~~i~ 180 (193)
T 2rem_A 105 PIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGTPTIVV--NGRYM--VTGHDFEDTLRITD 180 (193)
T ss_dssp CSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHCCSSSSEEEE--TTTEE--ECCSSHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEE--ecCCCHHHHHHHHH
Confidence 0 023567889999999554 88754 34558899999988
Q ss_pred hcC
Q 009096 509 LAP 511 (543)
Q Consensus 509 ~~~ 511 (543)
..+
T Consensus 181 ~~~ 183 (193)
T 2rem_A 181 YLV 183 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 480
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.05 E-value=7.6e-05 Score=57.32 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=79.7
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHhccC-C-CChhHHhHHHH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSE---ACSAYGEGLKYD-S-YNSILYCNRAI 320 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~ 320 (543)
.....+...|.+.+..++....+. ++.|+++.+..+... ++.+++..+..+ | ..-+.++.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~------------F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQ------------FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHH------------HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHH------------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 344556667777777666666553 457999988887666 999999999887 5 46789999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
.++++|+|++|+.+++.+++..|+|..+......+-
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998876655543
No 481
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.05 E-value=0.0001 Score=57.73 Aligned_cols=121 Identities=11% Similarity=-0.057 Sum_probs=93.5
Q ss_pred hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHhccCCCC--------hhHHhHHHHHHHHc
Q 009096 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY------SEACSAYGEGLKYDSYN--------SILYCNRAICWSKM 325 (543)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~ 325 (543)
-+.|.+++.|..+ .......|+. ++-++.|++|+..-|.. ...|...|.. ...
T Consensus 7 ~~~p~~yd~W~~y------------l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei 73 (161)
T 4h7y_A 7 MMMANNPEDWLSL------------LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI 73 (161)
T ss_dssp ---CCSHHHHHHH------------HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred eeCCCCHHHHHHH------------HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence 3578888887543 3344445777 88889999999876653 3556666655 567
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
++.++|.+.|+.++.+....+.+|...|....+.|+...|.+.+.+|+.+.|...+. +..+...++..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~---le~a~~nl~~~ 141 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM---LEIALRNLNLQ 141 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH---HHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH---HHHHHHhhhcC
Confidence 999999999999999988899999999999999999999999999999999988766 34444455433
No 482
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.05 E-value=9.1e-05 Score=56.94 Aligned_cols=87 Identities=15% Similarity=0.022 Sum_probs=75.8
Q ss_pred CChhHHhHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 310 YNSILYCNRAICWSKMGLW---ENSIEDCNVALRIQPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 310 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
-++.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.+|..+.++|+|++|.++.+.++++.|+|.++...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578999999999988764 5799999999998885 46899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhh
Q 009096 386 LHNAQVALKKS 396 (543)
Q Consensus 386 l~~~~~~l~~~ 396 (543)
...+...+.+.
T Consensus 118 k~~Ie~ki~kd 128 (134)
T 3o48_A 118 KSMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77777666543
No 483
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=98.05 E-value=7.5e-06 Score=73.22 Aligned_cols=86 Identities=14% Similarity=0.018 Sum_probs=67.8
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| +.||++|....|.|.++.++|. ++.++.|.+|. ...+++
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~ 169 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 169 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence 3578999999 8999999999999999998884 58888777663 235788
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
.|||. .+|+++++. +|+++.+..+ .+.+++.+.|+.+
T Consensus 170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al 218 (254)
T 3tjj_A 170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 218 (254)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 88986 579877775 9999988665 2567887777754
No 484
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=98.01 E-value=1.1e-05 Score=59.32 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=50.5
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcCC-----CcccEEEEEECCeEEEEEcCCC
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEGV-----RTVPTFKIYKNGEKLKEMINPS 499 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~v-----~~~Pt~~~~~~g~~~~~~~g~~ 499 (543)
.++.|+.+||++|+.+.+.|+++.- .+.+..+|++.. .++.+.+|. .++|++++ ||+.+. |.
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~---g~- 75 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG---GF- 75 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE---SH-
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe---Ch-
Confidence 4677899999999999999887532 245555666544 457778888 99999854 887654 44
Q ss_pred HHHHHHHHHhc
Q 009096 500 HQFLEDSANLA 510 (543)
Q Consensus 500 ~~~~~~~~~~~ 510 (543)
+++.+++++.
T Consensus 76 -~~i~~~~~~~ 85 (89)
T 3msz_A 76 -TELKANADKI 85 (89)
T ss_dssp -HHHHHTHHHH
T ss_pred -HHHHHHHHHH
Confidence 3555555543
No 485
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.00 E-value=0.00022 Score=55.66 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=75.3
Q ss_pred CCChhHHhHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 309 SYNSILYCNRAICWSKMGLW---ENSIEDCNVALRIQPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
.-+..+.+++|+++.+..+. .+++..++..+...|. .-+.+|.+|..+.++|+|++|.++.+.+++..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45689999999999998764 5799999999998885 4588999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHh
Q 009096 385 SLHNAQVALKK 395 (543)
Q Consensus 385 ~l~~~~~~l~~ 395 (543)
....+...+.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666655543
No 486
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=97.97 E-value=4.6e-05 Score=67.25 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=76.6
Q ss_pred eEEeehhhhhhhccCCC-CceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCC--cccEE
Q 009096 410 VEEISSLEKFKAAISSP-GVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVR--TVPTF 483 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~-~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~--~~Pt~ 483 (543)
+.+++ .+.+......+ ...++.|..+||+.|..+.+.+.++++++.+ +.|+.+|.+ ....+++.||+. .+|++
T Consensus 115 v~e~t-~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~ 193 (227)
T 4f9z_D 115 VTEYN-PVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPAL 193 (227)
T ss_dssp EEECC-HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEE
T ss_pred eeecC-cccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEE
Confidence 34443 34455555444 3455667788999999999999999999976 999999996 467789999998 89999
Q ss_pred EEEECCe-EEEEE-cCC-CHHHHHHHHHhcCC
Q 009096 484 KIYKNGE-KLKEM-INP-SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~-~~~~~-~g~-~~~~~~~~~~~~~~ 512 (543)
+++..+. ..... .|. +++.|++|++.+++
T Consensus 194 ~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 194 AIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp EEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred EEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence 9997332 22333 355 99999999998754
No 487
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=97.96 E-value=4.2e-06 Score=64.69 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=48.7
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC--c-----HHHHHHcCCCcccEEEEEEC
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE--S-----LAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~--~-----~~~~~~~~v~~~Pt~~~~~~ 488 (543)
...+++.+..++ ++.|+.+|||.|+.+.+.|+++ ++.|..+|++. . ..+.+..|..++|++++ |
T Consensus 7 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~-----~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~ 77 (114)
T 3h8q_A 7 RRHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSL-----GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--N 77 (114)
T ss_dssp HHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--C
Confidence 344555554333 4449999999999999999885 34556667663 2 33667789999999855 8
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 78 g~~ig 82 (114)
T 3h8q_A 78 KVHVG 82 (114)
T ss_dssp TEEEE
T ss_pred CEEEe
Confidence 97665
No 488
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=97.96 E-value=3.9e-06 Score=66.26 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=50.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccch-hHhHHHHHhhCCCeEEEEEeCcCc-------HHHHHHcCCCcccEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEI-SPFVNLLCVRYPYVHFFKVDVEES-------LAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~~~~~~~~~d~~~~-------~~~~~~~~v~~~Pt~~~~ 486 (543)
..+.+.+.+...+ ++.|+.+|||+|+.+ .+.|+++... .+.+..+|++.. .++.+.+|+.++|++ |
T Consensus 26 ~~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--f 99 (129)
T 3ctg_A 26 TVAHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--Y 99 (129)
T ss_dssp HHHHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--E
T ss_pred HHHHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--E
Confidence 3345555554333 677999999999999 8888775422 244555555532 468888999999995 6
Q ss_pred ECCeEEE
Q 009096 487 KNGEKLK 493 (543)
Q Consensus 487 ~~g~~~~ 493 (543)
.||+.+.
T Consensus 100 i~g~~ig 106 (129)
T 3ctg_A 100 INGKHIG 106 (129)
T ss_dssp ETTEEEE
T ss_pred ECCEEEc
Confidence 6898654
No 489
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.96 E-value=4.8e-05 Score=61.16 Aligned_cols=94 Identities=20% Similarity=0.078 Sum_probs=78.6
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch---------hhHHhHHHHHHHcCCHHHHHHHHHHHHhcC------C-
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENA---------AYRSNRAATLTALGRLTEAVSDCEEAVRLD------P- 113 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p- 113 (543)
+++.....++..|.|+.|+.....++....+++ .++..+|.+++..++|..|...|+++++.. |
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 577888899999999999999999887643333 478999999999999999999999987642 1
Q ss_pred ------------------CChhHHHHHHHHHHHhCCHHHHHHHhcCCC
Q 009096 114 ------------------GYNRAHQRLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 114 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
...+..+.++.||..++++++|+..++..-
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 112678999999999999999999998764
No 490
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=97.91 E-value=4.2e-05 Score=63.94 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=58.9
Q ss_pred CCCceeeeeeCCCCc-cccchhHhHHHHHhhC----CCeEEEEEeCcCc---H----HHHHHcCC---------------
Q 009096 425 SPGVSLVHFKEASSE-KCEEISPFVNLLCVRY----PYVHFFKVDVEES---L----AIAKSEGV--------------- 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~---~----~~~~~~~v--------------- 477 (543)
.++++++.||.+||+ .|....+.+.++.+.+ .++.++.|.+|.. + ..+++|++
T Consensus 31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~ 110 (170)
T 4hde_A 31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLED 110 (170)
T ss_dssp TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHH
T ss_pred CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHH
Confidence 468999999999997 7998888887776655 3478887776521 1 12222221
Q ss_pred ---------------------CcccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhc
Q 009096 478 ---------------------RTVPTFKIY-KNGEKLKEMINP---SHQFLEDSANLA 510 (543)
Q Consensus 478 ---------------------~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~ 510 (543)
...|+++++ ++|+++.++.|. +.+++.+.|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~L 168 (170)
T 4hde_A 111 ITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 223566666 599999988885 567777777654
No 491
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=97.90 E-value=5.7e-05 Score=66.60 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=79.5
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
....+.+.+.+++.+..+..++|-|+++| |....|.+.+++..+.++.|+... +.+++.+++|.+ ||+++|++
T Consensus 10 ~~~~l~s~~~~~~~l~~~~v~vVgff~~~---~~~~~~~f~~~A~~l~~~~F~~t~---~~~v~~~~~v~~-p~i~lfk~ 82 (227)
T 4f9z_D 10 EPTWLTDVPAAMEFIAATEVAVIGFFQDL---EIPAVPILHSMVQKFPGVSFGIST---DSEVLTHYNITG-NTICLFRL 82 (227)
T ss_dssp CCEECCSHHHHHHHHHTSSEEEEEECSCS---CSTHHHHHHHHTTTCTTSEEEEEC---CHHHHHHTTCCS-SEEEEEET
T ss_pred CCeeeCCHHHHHHHHhcCCeEEEEEecCC---CchhHHHHHHHHHhCCCceEEEEC---CHHHHHHcCCCC-CeEEEEEe
Confidence 45677788888888888999999999998 578889999999999778888643 678999999998 99999997
Q ss_pred Ce-EEEEEc----C-CCHHHHHHHHHhcCCC
Q 009096 489 GE-KLKEMI----N-PSHQFLEDSANLAPSP 513 (543)
Q Consensus 489 g~-~~~~~~----g-~~~~~~~~~~~~~~~~ 513 (543)
+. ....+. | .+.+.|.+||+...-|
T Consensus 83 ~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p 113 (227)
T 4f9z_D 83 VDNEQLNLEDEDIESIDATKLSRFIEINSLH 113 (227)
T ss_dssp TTTEEEEECHHHHHTCCHHHHHHHHHHHCCC
T ss_pred cCcccccccccccCCCCHHHHHHHHHHhCCC
Confidence 53 233344 3 4999999999987543
No 492
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=97.86 E-value=6.6e-06 Score=70.45 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeCcCc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDVEES 468 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~~~~ 468 (543)
.++++|.||+.|||+|+.+.|.+ +++.+++++ ++|.+++++.+
T Consensus 113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~ 159 (197)
T 1un2_A 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159 (197)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence 56899999999999999999999 999999985 99999999864
No 493
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=97.85 E-value=4e-05 Score=67.23 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=64.7
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------------cHHHHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------------SLAIAKS 474 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------------~~~~~~~ 474 (543)
.+++.||++||+.|....|.|.++.+++. ++.++.|.+|. ...+++.
T Consensus 34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ 113 (224)
T 1prx_A 34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL 113 (224)
T ss_dssp EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence 56666799999999999999999988874 57887776653 1347778
Q ss_pred cCCC------------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 475 EGVR------------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
|||. .+|+++++. +|+++....| .+.+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l 167 (224)
T 1prx_A 114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 167 (224)
T ss_dssp TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8884 378888885 9999988764 3688898888865
No 494
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.83 E-value=0.00011 Score=59.06 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC------C---
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------SILYCNRAICWSKMGLWENSIEDCNVALRIQ------P--- 343 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p--- 343 (543)
++....+...+.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|+++++.. +
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 345777889999999999999877664333 3488999999999999999999999997642 1
Q ss_pred ----------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 344 ----------------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 344 ----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
.+.+..+.++.|+.+++++++|+..++.. -..-..+.+...|++
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLAN 163 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHH
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHH
Confidence 11268899999999999999999987642 111234455544444
No 495
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=97.80 E-value=4.3e-05 Score=66.80 Aligned_cols=83 Identities=6% Similarity=0.007 Sum_probs=64.5
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHHcCC
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKSEGV 477 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~~~v 477 (543)
.+++.||++||+.|....|.|.++.+++. ++.++.|.+|. ...+++.|||
T Consensus 34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv 113 (220)
T 1xcc_A 34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI 113 (220)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence 45556799999999999999999888773 58888777653 2357788888
Q ss_pred C------------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 478 R------------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 478 ~------------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
. .+|+++++. +|+++....| .+.+++.+.|+.+
T Consensus 114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4 478888885 9999988753 4788999988865
No 496
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=97.75 E-value=6.9e-05 Score=65.90 Aligned_cols=84 Identities=8% Similarity=-0.012 Sum_probs=65.0
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------------------------cHHHHHH
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------------------------SLAIAKS 474 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------------------------~~~~~~~ 474 (543)
+++++.|| ++||+.|....|.|.++.+++. ++.++.|.+|. ...+++.
T Consensus 30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ 109 (233)
T 2v2g_A 30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVK 109 (233)
T ss_dssp SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHH
T ss_pred CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHH
Confidence 47888888 8999999999999998887773 57777776552 2347778
Q ss_pred cCCC------------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 475 EGVR------------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
|||. .+|+++++. +|+++....| .+.+++.+.|+.+
T Consensus 110 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 110 LGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp TTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred hCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8885 578888885 9999988754 3678888888865
No 497
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=97.74 E-value=4.4e-05 Score=65.08 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDV 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~ 465 (543)
.++.++.|+..|||+|..+.|.+ .++.+++++ ++|..+++
T Consensus 21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~ 64 (191)
T 3l9s_A 21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHV 64 (191)
T ss_dssp SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEEC
T ss_pred CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEec
Confidence 37899999999999999999987 699999984 76666654
No 498
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.69 E-value=0.00028 Score=55.33 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=88.6
Q ss_pred ccccccCHHHHHHHhhHHHhcCCH------HHHHHHHHHHHhcCCcc--------hhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNF------VEALKLYDKAISMSPEN--------AAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
+.+.|.+++.|.......-..|+. ++-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 356799999999999999999999 99999999999876643 3445555544 56799999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
.++++....+..|...|..-.++|+...|...+.+++. .+.|.
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 99999888999999999999999999999999988876 44433
No 499
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=0.00033 Score=58.30 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=66.1
Q ss_pred cCCCCceeeeeeCCCCccccchhH------hHHHHHhhCCCeEEEEEeCcCcH---------------HHHHH---cCCC
Q 009096 423 ISSPGVSLVHFKEASSEKCEEISP------FVNLLCVRYPYVHFFKVDVEESL---------------AIAKS---EGVR 478 (543)
Q Consensus 423 i~~~~~~lv~f~~~~c~~c~~~~p------~l~~l~~~~~~~~~~~~d~~~~~---------------~~~~~---~~v~ 478 (543)
-...+.++|+++++||..|..+.. .+.++..+ ++.++..|++..+ .++.. +++.
T Consensus 52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~ 129 (178)
T 2ec4_A 52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTD 129 (178)
T ss_dssp TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCST
T ss_pred hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCC
Confidence 445789999999999999998764 23333332 6889999998654 45544 8999
Q ss_pred cccEEEEEE-C---CeEEEEEcCC-CHHHHHHHHHhc
Q 009096 479 TVPTFKIYK-N---GEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 479 ~~Pt~~~~~-~---g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
++|++.++. . ++++.++.|. +++++.+.|.+.
T Consensus 130 ~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~ 166 (178)
T 2ec4_A 130 QFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA 166 (178)
T ss_dssp TCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999984 2 3678999999 999998888754
No 500
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=97.61 E-value=0.00025 Score=61.30 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=61.2
Q ss_pred CCCceeeeeeCCC-Ccccc-----chhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHc
Q 009096 425 SPGVSLVHFKEAS-SEKCE-----EISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~-----~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~ 475 (543)
.++++++.||..| |+.|. ...|.|.++ +.++.++.|..|. ...+++.|
T Consensus 47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~y 123 (224)
T 3keb_A 47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRY 123 (224)
T ss_dssp TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHT
T ss_pred CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHh
Confidence 3578999999887 99999 666666665 5677777776552 24688999
Q ss_pred CCCc---------ccEEEEEE-CCeEEEEEcC-----C-CHHHHHHHHHhc
Q 009096 476 GVRT---------VPTFKIYK-NGEKLKEMIN-----P-SHQFLEDSANLA 510 (543)
Q Consensus 476 ~v~~---------~Pt~~~~~-~g~~~~~~~g-----~-~~~~~~~~~~~~ 510 (543)
||.. +|+++++. +|+++....+ . +.+++.+.|+..
T Consensus 124 Gv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 124 GVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp TCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHH
T ss_pred CCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHh
Confidence 9975 79888885 9999887543 2 577777777754
Done!