BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009098
(543 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1
Length = 507
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 43/226 (19%)
Query: 13 FRPSASTKTFISLVL--------QPDMQLRDKILVLLDSWQEAFGG----PGGKHPQYYW 60
F + + FI +L P ++DK+L L+ +W +AF G H
Sbjct: 85 FHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH----- 139
Query: 61 AYEDLRRYGVQFPKRSPDA-APIFTPPVS----------HPTLGQAQASYGMPSNSS--- 106
YE+L+R G++FP DA +PI TP S H + Q + S+ SNS
Sbjct: 140 IYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTS 199
Query: 107 ----------RRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDREAVKDEV 154
+ ++ E + S LD +R ++++S+ML + P A E+
Sbjct: 200 TPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLEL 259
Query: 155 IVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 200
+ DL CR+ Q++++++++ +EE+ L +ND L N+ +++
Sbjct: 260 LQDLNRTCRTMQERIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 305
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1
Length = 507
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 41/224 (18%)
Query: 13 FRPSASTKTFISLVL--------QPDMQLRDKILVLLDSWQEAFGG----PGGKHPQYYW 60
F + + FI VL P ++DK+L L+ +W +AF G H
Sbjct: 85 FHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH----- 139
Query: 61 AYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTL--------GQAQ-------------AS 98
YE+L+R G++FP DA +PI TP S P + Q Q AS
Sbjct: 140 IYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPAS 199
Query: 99 YGMPSNSSRRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIV 156
Y + + + E ++ S LD +R +++S+ML + P ++ E++
Sbjct: 200 YSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQ 259
Query: 157 DLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 200
+L CR+ Q +++++++ +EE+ L +ND L N+ +++
Sbjct: 260 ELNRTCRAMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 303
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1
Length = 507
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 41/224 (18%)
Query: 13 FRPSASTKTFISLVL--------QPDMQLRDKILVLLDSWQEAFGG----PGGKHPQYYW 60
F + + FI VL P ++DK+L L+ +W +AF G H
Sbjct: 85 FHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH----- 139
Query: 61 AYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTL--------GQAQASYGMPSNSSRRLDE 111
YE+L+R GV+FP DA +PI TP S P + Q+Q S SS
Sbjct: 140 IYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSYSSPPPAP 199
Query: 112 TMATEVETLSF---------------SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIV 156
A + LS S LD +R +++S+ML + P ++ E++
Sbjct: 200 YSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELLQ 259
Query: 157 DLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 200
+L CR+ Q++++++++ +EE+ L +ND L N+ +++
Sbjct: 260 ELNRTCRAMQQRIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 303
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1
Length = 492
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 35/233 (15%)
Query: 33 LRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPT 91
+ DK+L L+ SW +AF YEDLRR G++FP D +PI TP +
Sbjct: 113 VHDKVLNLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFN 171
Query: 92 LGQAQASYGMPSNSSRRLDETM-ATEVETLSF------------------SSLDSMRDVM 132
+ SN+S+R D + AT + T + S L+ + +
Sbjct: 172 SETPSRQNSVSSNTSQRGDLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNV 231
Query: 133 ELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDIL 192
++S+ML + P+ E E++ +L CR+ Q+++++++ +E+L L +ND L
Sbjct: 232 RVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQRILELIPRISNEQLTEELLMINDNL 291
Query: 193 QNLLAKHDAI-----------ASGLPIPTEVTNLSPKPNEACAASSLKSTDAG 234
N+ +H+ +S + T++ ++ P P A ++L S AG
Sbjct: 292 NNVFLRHERFERFRTGQTAKASSEAELATDLIDMGPDP---AATNNLSSQLAG 341
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2
Length = 492
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 33 LRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTP--PVSH 89
+ DK+L L+ SW +AF YEDLRR G++FP D +PI TP V +
Sbjct: 113 VHDKVLNLIQSWADAFRS-SPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFN 171
Query: 90 PTLGQAQASYGMPSNSSRRLDETMA------------------TEVETLSFSSLDSMRDV 131
Q S G S+ + A ++ L S L+ +
Sbjct: 172 SETQSGQDSVGTDSSQQEDSGQHAAPLPAPPILSGDTPIAPTPEQIGKLR-SELEMVSGN 230
Query: 132 MELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDI 191
+ ++S+ML + P+ E E++ +L CR+ Q+++++++ +E+L L +ND
Sbjct: 231 VRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDN 290
Query: 192 LQNLLAKHD 200
L N+ +H+
Sbjct: 291 LNNVFLRHE 299
>sp|O75674|TM1L1_HUMAN TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1 SV=2
Length = 476
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 18/245 (7%)
Query: 8 SVQRLFRPSASTKTFISLVLQPD----MQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYE 63
S Q L K + +L P + ++++IL + +W + F G G + Y
Sbjct: 86 SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG-GVDVSEVKEVYL 144
Query: 64 DLRRYGVQFP--------KRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMAT 115
DL + GVQFP R A PP S PT A +S P NS+ T+
Sbjct: 145 DLVKKGVQFPPSEAEAETARQETAQISSNPPTSVPT-APALSSVIAPKNSTV----TLVP 199
Query: 116 EVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTT 175
E S LD ++ + ++S +L P E++ L R Q+++M +L
Sbjct: 200 EQIGKLHSELDMVKMNVRVMSAILMENTPGSENHEDIELLQKLYKTGREMQERIMDLLVV 259
Query: 176 TGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGD 235
+E++ +++N+ L N + ++ E + + S S D D
Sbjct: 260 VENEDVTVELIQVNEDLNNAILGYERFTRNQQRILEQNKNQKEATNTTSEPSAPSQDLLD 319
Query: 236 SSPTP 240
SP+P
Sbjct: 320 LSPSP 324
>sp|O12940|TOM1_CHICK Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2
Length = 515
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 28/208 (13%)
Query: 33 LRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPT 91
+ DK+L L+ SW +AF YEDLRR G++FP D +PI TP S +
Sbjct: 113 VHDKVLTLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSVYS 171
Query: 92 LGQAQASYGMPSNSSRRLDETM--------------------ATEVETLSFSSLDSMRDV 131
NS ++++ + +++ L S L+ +
Sbjct: 172 SNSQSGQNSPAVNSPQQMESILHPVTLPSGRDTSSNVPITPTQEQIKKLR-SELEVVNGN 230
Query: 132 MELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDI 191
++++S+ML + PS E E++ +L CR+ Q+++++++ E+L L +ND
Sbjct: 231 VKVMSEMLTELVPSQAETSDLELLQELNRTCRAMQQRVLELIPRVQHEQLTEELLLINDN 290
Query: 192 LQNLLAKH---DAIASGLPI--PTEVTN 214
L N+ +H + + +G P+ P+E N
Sbjct: 291 LNNVFLRHERFERVRTGQPVKAPSEAEN 318
>sp|Q9NZ52|GGA3_HUMAN ADP-ribosylation factor-binding protein GGA3 OS=Homo sapiens
GN=GGA3 PE=1 SV=1
Length = 723
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 106 SRRLDETMATEVE------TLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLV 159
+ +L ++M E E T +L+ + + + LLS+ML + D E++ +L
Sbjct: 193 ANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELF 252
Query: 160 SRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLS 216
+C + ++ L ++ + T D + LG L+ +D L ++ + I G I EV L+
Sbjct: 253 DQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLT 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,797,098
Number of Sequences: 539616
Number of extensions: 10637497
Number of successful extensions: 47251
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 1849
Number of HSP's that attempted gapping in prelim test: 38472
Number of HSP's gapped (non-prelim): 7254
length of query: 543
length of database: 191,569,459
effective HSP length: 122
effective length of query: 421
effective length of database: 125,736,307
effective search space: 52934985247
effective search space used: 52934985247
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)