Query 009098
Match_columns 543
No_of_seqs 166 out of 538
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wrd_A TOM1, target of MYB pro 99.9 3.1E-25 1.1E-29 193.6 8.9 93 116-208 6-98 (103)
2 1oxz_A ADP-ribosylation factor 99.9 1.2E-24 4.2E-29 207.5 10.0 92 122-213 75-168 (186)
3 1o3x_A ADP-ribosylation factor 99.9 2.8E-23 9.7E-28 190.3 12.5 102 108-209 30-139 (140)
4 1naf_A ADP-ribosylation factor 99.9 2.1E-23 7.3E-28 194.5 11.4 105 108-212 39-151 (158)
5 1wr6_A ADP-ribosylation factor 99.9 3E-24 1E-28 190.0 5.3 91 122-212 7-98 (111)
6 1juq_A ADP-ribosylation factor 99.8 1.3E-19 4.3E-24 170.2 9.5 82 4-90 80-169 (171)
7 1x5b_A Signal transducing adap 99.8 1.9E-19 6.5E-24 167.7 10.2 75 4-79 82-157 (163)
8 1mhq_A ADP-ribosylation factor 99.8 4.8E-19 1.7E-23 162.8 9.3 71 4-78 68-144 (148)
9 3ldz_A STAM-1, signal transduc 99.8 5.8E-19 2E-23 160.5 7.6 69 4-73 72-140 (140)
10 1elk_A Target of MYB1; superhe 99.7 2.4E-18 8.3E-23 159.1 8.4 70 4-74 84-157 (157)
11 3zyq_A Hepatocyte growth facto 99.7 1.4E-17 4.7E-22 161.9 7.7 73 5-78 76-149 (226)
12 3g2s_A C-terminal fragment of 99.7 2.4E-17 8.1E-22 152.0 8.5 64 4-71 78-147 (149)
13 1dvp_A HRS, hepatocyte growth 99.6 1.2E-15 4.1E-20 147.0 9.3 79 4-84 72-151 (220)
14 3rru_A TOM1L1 protein; structu 99.6 3.2E-16 1.1E-20 145.0 4.8 65 4-69 84-152 (152)
15 2pjw_H Uncharacterized protein 97.4 0.00017 5.8E-09 61.6 5.0 77 128-206 8-86 (88)
16 2pjw_V Vacuolar protein sortin 96.5 0.0084 2.9E-07 51.5 8.3 74 130-205 9-83 (91)
17 3f1i_H Hepatocyte growth facto 86.7 1.7 6E-05 37.7 7.0 75 124-200 5-79 (98)
18 1sz9_A PCF11 protein; RNA poly 79.7 3.5 0.00012 37.3 6.5 43 27-69 95-139 (144)
19 3f1i_S STAM-1, signal transduc 75.5 13 0.00044 31.1 8.1 72 130-204 5-76 (77)
20 3iot_A Maltose-binding protein 75.5 0.61 2.1E-05 47.5 0.2 14 16-29 17-31 (449)
21 3iot_A Maltose-binding protein 56.6 2.3 7.9E-05 43.3 0.0 12 62-73 67-78 (449)
22 1i5n_A Chemotaxis protein CHEA 48.3 1.3E+02 0.0045 26.6 10.2 76 122-200 10-106 (146)
23 1hs7_A Syntaxin VAM3; UP-and-D 37.8 1.3E+02 0.0043 25.9 7.9 77 125-204 12-92 (97)
24 2lig_A Aspartate receptor; che 37.8 99 0.0034 25.4 7.3 55 149-203 90-148 (164)
25 1x4t_A Hypothetical protein LO 37.7 30 0.001 29.8 3.9 39 160-198 24-67 (92)
26 1o5h_A Formiminotetrahydrofola 34.5 71 0.0024 30.9 6.5 42 134-175 49-91 (214)
27 2dnx_A Syntaxin-12; snare, HAB 34.5 1.6E+02 0.0055 25.8 8.4 81 123-203 21-111 (130)
28 1xou_B Z5138 gene product; coi 34.2 38 0.0013 28.4 3.9 33 109-141 13-47 (95)
29 2asr_A Aspartate receptor; che 29.4 2.4E+02 0.0082 23.3 8.5 79 125-203 53-135 (142)
30 1s94_A S-syntaxin; three helix 27.9 1.4E+02 0.0047 27.2 7.0 89 116-205 44-148 (180)
31 2lp4_A Chemotaxis protein CHEA 27.9 2.9E+02 0.01 25.9 9.6 75 123-200 11-106 (225)
32 3kyj_A CHEA3, putative histidi 26.7 3.4E+02 0.012 24.1 9.2 77 122-201 14-111 (144)
33 1tqg_A Chemotaxis protein CHEA 26.3 2.6E+02 0.009 22.7 8.2 43 157-199 59-103 (105)
34 2d4u_A Methyl-accepting chemot 25.7 2.7E+02 0.0092 23.6 8.2 53 151-203 98-154 (176)
35 1vls_A TAR, aspartate receptor 25.4 2.3E+02 0.0077 23.6 7.5 78 126-203 57-138 (146)
36 2c0s_A Conserved domain protei 25.3 1.3E+02 0.0044 23.9 5.5 48 155-206 3-52 (64)
37 1ez3_A Syntaxin-1A; three heli 25.3 2.9E+02 0.01 23.1 8.3 80 122-201 18-113 (127)
38 3rkg_A Magnesium transporter M 24.5 83 0.0028 31.3 5.2 43 148-190 214-258 (261)
39 3d36_A Sporulation kinase B; G 23.3 1.1E+02 0.0036 27.3 5.3 83 123-207 23-105 (244)
40 2bzb_A Conserved domain protei 22.4 1.3E+02 0.0043 23.9 4.9 48 155-206 3-52 (62)
41 1fio_A SSO1 protein; four heli 21.7 4.4E+02 0.015 23.7 10.8 79 122-200 15-101 (196)
42 3d9j_A RNA-binding protein 16; 21.4 1E+02 0.0035 27.5 4.8 31 16-46 86-119 (145)
43 3f4m_A Tumor necrosis factor, 21.3 2.1E+02 0.0072 26.7 6.9 55 145-199 54-111 (161)
44 1h3o_B Transcription initiatio 21.3 1E+02 0.0034 25.4 4.2 37 12-48 4-43 (76)
45 1deq_A Fibrinogen (alpha chain 21.2 1.4E+02 0.0047 31.6 6.2 139 21-190 53-193 (390)
46 2spc_A Spectrin; cytoskeleton; 21.1 3.2E+02 0.011 21.9 7.7 47 157-203 47-95 (107)
47 2p22_C Protein SRN2; endosome, 20.9 1.2E+02 0.0042 28.8 5.4 60 117-176 35-95 (192)
48 2km4_A Regulator of TY1 transp 20.7 71 0.0024 28.3 3.5 27 21-47 89-116 (142)
49 3mud_A DNA repair protein XRCC 20.5 1E+02 0.0035 29.2 4.6 48 151-198 122-171 (175)
No 1
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.92 E-value=3.1e-25 Score=193.62 Aligned_cols=93 Identities=23% Similarity=0.349 Sum_probs=86.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHH
Q 009098 116 EVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNL 195 (543)
Q Consensus 116 D~ekLS~sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~V 195 (543)
++.++.++||++|++|++||+|||++++|++....++|+|+|||++||+||+||++||++++||++|+++|++||+||+|
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~v 85 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNV 85 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHH
Confidence 33334489999999999999999999999998889999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 009098 196 LAKHDAIASGLPI 208 (543)
Q Consensus 196 L~RYd~i~sG~~~ 208 (543)
|.||++|++|...
T Consensus 86 l~ry~~~~~~~~~ 98 (103)
T 1wrd_A 86 FLRHERFERFRTG 98 (103)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999988754
No 2
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.91 E-value=1.2e-24 Score=207.51 Aligned_cols=92 Identities=18% Similarity=0.381 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHhHHHHHHHhhhcC-CHHHHHHhhhcchHHHHHHHHH
Q 009098 122 FSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTG-DEELLGRGLELNDILQNLLAKH 199 (543)
Q Consensus 122 ~sELevVrnNvkLLsEML~~~~Pg~~~~~-ddELIqELyetCrsmQpRI~~LIeets-DEElL~eLL~lNDdLn~VL~RY 199 (543)
++||++|++|++||+|||++++|++.... ++|+|+|||++||+||+||++||++++ ||++|+++|++||+||+||.||
T Consensus 75 ~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY 154 (186)
T 1oxz_A 75 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLY 154 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHH
Confidence 78999999999999999999999998887 999999999999999999999999876 5899999999999999999999
Q ss_pred HHHhcCCCCCCccc
Q 009098 200 DAIASGLPIPTEVT 213 (543)
Q Consensus 200 d~i~sG~~~~~e~~ 213 (543)
+++++|+...++..
T Consensus 155 ~~~~~g~~~~~~~~ 168 (186)
T 1oxz_A 155 KQLVRGEEVNGDAT 168 (186)
T ss_dssp TTHHHHCC------
T ss_pred HHHhcCCCCCcccc
Confidence 99999998887663
No 3
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.89 E-value=2.8e-23 Score=190.28 Aligned_cols=102 Identities=20% Similarity=0.361 Sum_probs=89.3
Q ss_pred hhhhhhh-H-----HHhhhcHHHHHHHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHhHHHHHHHhhhcCC-H
Q 009098 108 RLDETMA-T-----EVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-E 179 (543)
Q Consensus 108 ~L~~sms-~-----D~ekLS~sELevVrnNvkLLsEML~~~~Pg~~~~~-ddELIqELyetCrsmQpRI~~LIeetsD-E 179 (543)
.|.+.|. . ++.+..++||++|++|++||+|||++++|++.... ++|+|+|||++||+||+||++||++++| |
T Consensus 30 ~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~dde 109 (140)
T 1o3x_A 30 KLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDND 109 (140)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 4677664 1 22333378999999999999999999999998887 8999999999999999999999998764 8
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhcCCCCC
Q 009098 180 ELLGRGLELNDILQNLLAKHDAIASGLPIP 209 (543)
Q Consensus 180 ElL~eLL~lNDdLn~VL~RYd~i~sG~~~~ 209 (543)
++|+++|++||+||+||.||+++++|....
T Consensus 110 e~l~elL~~ND~ln~vl~kY~~~~~g~~~~ 139 (140)
T 1o3x_A 110 EALAEILQANDNLTQVINLYKQLVRGEEVN 139 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999999998754
No 4
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.89 E-value=2.1e-23 Score=194.55 Aligned_cols=105 Identities=19% Similarity=0.356 Sum_probs=81.6
Q ss_pred hhhhhhh-H-----HHhhhcHHHHHHHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHhHHHHHHHhhhcCC-H
Q 009098 108 RLDETMA-T-----EVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-E 179 (543)
Q Consensus 108 ~L~~sms-~-----D~ekLS~sELevVrnNvkLLsEML~~~~Pg~~~~~-ddELIqELyetCrsmQpRI~~LIeetsD-E 179 (543)
.|.+.|. . ++.+..++||++|++|++||+|||++++|++.... ++|+|+|||++||+||+||++||++++| |
T Consensus 39 ~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~dde 118 (158)
T 1naf_A 39 KLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDND 118 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 3666663 2 22333378999999999999999999999988877 8999999999999999999999998764 8
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhcCCCCCCcc
Q 009098 180 ELLGRGLELNDILQNLLAKHDAIASGLPIPTEV 212 (543)
Q Consensus 180 ElL~eLL~lNDdLn~VL~RYd~i~sG~~~~~e~ 212 (543)
++|+++|++||+||+||.||+++++|+...++.
T Consensus 119 e~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~ 151 (158)
T 1naf_A 119 EALAEILQANDNLTQVINLYKQLVRGEEVNGDA 151 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999877654
No 5
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.89 E-value=3e-24 Score=189.98 Aligned_cols=91 Identities=24% Similarity=0.437 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhcC-CHHHHHHhhhcchHHHHHHHHHH
Q 009098 122 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTG-DEELLGRGLELNDILQNLLAKHD 200 (543)
Q Consensus 122 ~sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeets-DEElL~eLL~lNDdLn~VL~RYd 200 (543)
++||++|++|++||+|||++++|++....+.|+|+|||++||+|||||++||+++. ||++|+++|++||+||+||.||+
T Consensus 7 ~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~rY~ 86 (111)
T 1wr6_A 7 LHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYK 86 (111)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHHHHH
Confidence 68999999999999999999999998888999999999999999999999999886 58899999999999999999999
Q ss_pred HHhcCCCCCCcc
Q 009098 201 AIASGLPIPTEV 212 (543)
Q Consensus 201 ~i~sG~~~~~e~ 212 (543)
+|++|+...++.
T Consensus 87 ~~~~g~~~~~~~ 98 (111)
T 1wr6_A 87 TIIEGQVINGEV 98 (111)
T ss_dssp HTTTCC------
T ss_pred HHhcCCCCCCcc
Confidence 999999877655
No 6
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=99.79 E-value=1.3e-19 Score=170.24 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=67.5
Q ss_pred CCchhHHHhhhcHHHHHHHHHhh-cCC-----CHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCC--CCC
Q 009098 4 FVSYSVQRLFRPSASTKTFISLV-LQP-----DMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQF--PKR 75 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnELVKLI-pK~-----~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~F--P~~ 75 (543)
=||+.||.||++++||+||+|++ +|+ +..||+|||+||+.|+++|++ +++|+++|++||++||+| |..
T Consensus 80 NCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~~~i~~~y~~Lk~~G~~f~~P~~ 155 (171)
T 1juq_A 80 NCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE----EAKIKDAYHMLKRQGIVQSDPPI 155 (171)
T ss_dssp HSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSCSSCCCB
T ss_pred HcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHCCCCCCCCCC
Confidence 39999999999999999999999 764 579999999999999999997 689999999999999998 666
Q ss_pred CCCCCCCCCCCCCCC
Q 009098 76 SPDAAPIFTPPVSHP 90 (543)
Q Consensus 76 ~~daaPI~TPp~S~P 90 (543)
+.+ .++|+||.+.+
T Consensus 156 ~~~-~~~f~~p~~~~ 169 (171)
T 1juq_A 156 PVD-RTLIPSPPPRP 169 (171)
T ss_dssp CCC-TTCC-------
T ss_pred Ccc-ccCCCCCCCCC
Confidence 644 46899887654
No 7
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=99.79 E-value=1.9e-19 Score=167.75 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCchhHHHhhhcHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCCCCCCCC
Q 009098 4 FVSYSVQRLFRPSASTKTFISLV-LQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDA 79 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnELVKLI-pK~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP~~~~da 79 (543)
=||+.||.||++++||+||+||+ +++++.||+|||+||+.|+++|++.++ +..|+++|++||++||+||..+.++
T Consensus 82 NcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~-l~~i~~~Y~~Lk~~G~~FP~~~~~~ 157 (163)
T 1x5b_A 82 NCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQ-FSLISATIKSMKEEGITFPPAGSQT 157 (163)
T ss_dssp HTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCST-THHHHHHHHHHHTTTCCCCCCSSCC
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 39999999999999999999999 889999999999999999999998765 7889999999999999999998765
No 8
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=99.77 E-value=4.8e-19 Score=162.81 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=65.2
Q ss_pred CCchhHHHhhhcHHHHHHHHHhh-cC-----CCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCCCCCC
Q 009098 4 FVSYSVQRLFRPSASTKTFISLV-LQ-----PDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSP 77 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnELVKLI-pK-----~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP~~~~ 77 (543)
=||+.||.|||+++||+||+|++ +| .+..||+|||+||++|+++|++ .|+|+++|++||++||+||+.+.
T Consensus 68 NCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~y~~Lk~~G~~Fp~~~~ 143 (148)
T 1mhq_A 68 HCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE----DIKIRDAYQMLKKQGIIKQDPKL 143 (148)
T ss_dssp HSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSSCSCCCC
T ss_pred HcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHcCCCCCCCCC
Confidence 39999999999999999999999 65 3679999999999999999997 58899999999999999998875
Q ss_pred C
Q 009098 78 D 78 (543)
Q Consensus 78 d 78 (543)
.
T Consensus 144 ~ 144 (148)
T 1mhq_A 144 P 144 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 9
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=99.76 E-value=5.8e-19 Score=160.54 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCchhHHHhhhcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCC
Q 009098 4 FVSYSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFP 73 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnELVKLIpK~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP 73 (543)
=||+.||.||++++||+||+|+++++++.||+|||+||++|+++|++.+. +..|.++|++||++||+||
T Consensus 72 NcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~-l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 72 NCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQ-LSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGG-GTHHHHHHHHHHHTTCCCC
T ss_pred hcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHccCcCc
Confidence 39999999999999999999999778999999999999999999998765 7889999999999999998
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=99.74 E-value=2.4e-18 Score=159.14 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=65.3
Q ss_pred CCchhHHHhhhcHHHHHH-HHHhh-cCCC--HHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCCC
Q 009098 4 FVSYSVQRLFRPSASTKT-FISLV-LQPD--MQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPK 74 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnE-LVKLI-pK~~--~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP~ 74 (543)
=||+.||.||++++||+| |||++ +|++ ..||+|||+||+.|+++|++.++ +..|+++|++||++||+||.
T Consensus 84 NcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~-l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 84 NCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPD-LTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCCCCC
T ss_pred HhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHcCCCCCC
Confidence 399999999999999999 99999 8765 59999999999999999998776 88999999999999999994
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.70 E-value=1.4e-17 Score=161.92 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=68.7
Q ss_pred CchhHHHhhhcHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCCCCCCC
Q 009098 5 VSYSVQRLFRPSASTKTFISLV-LQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPD 78 (543)
Q Consensus 5 cgYpVH~eIAskeFLnELVKLI-pK~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP~~~~d 78 (543)
||+.||.||++++||++|++|+ ++.+..||+|||+||+.|+++|++.+. +..|.++|++||++||+||+.++.
T Consensus 76 cG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~-l~~i~~~Y~~Lk~~G~~FP~~~~~ 149 (226)
T 3zyq_A 76 CGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPK-YKVVQDTYQIMKVEGHVFPEFKES 149 (226)
T ss_dssp HCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGG-GHHHHHHHHHHHHHTCCCCCCCGG
T ss_pred cchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCCCcccchhH
Confidence 8999999999999999999999 889999999999999999999999765 788999999999999999987653
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=99.70 E-value=2.4e-17 Score=152.03 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=59.9
Q ss_pred CCchhHHHhhhcHHHHHHHHHhh-cC-----CCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 009098 4 FVSYSVQRLFRPSASTKTFISLV-LQ-----PDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQ 71 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnELVKLI-pK-----~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~ 71 (543)
=||+.||.||++|+||+||+|++ +| .+..||+|||+||++|+++|++ .|+|+++|++||++||+
T Consensus 78 NCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 78 SCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE----EVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTCC
T ss_pred hcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC----CchHHHHHHHHHHCcCc
Confidence 39999999999999999999999 76 4579999999999999999987 68999999999999986
No 13
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.60 E-value=1.2e-15 Score=147.01 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=70.1
Q ss_pred CCchhHHHhhhcHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCCCCCCCCCCC
Q 009098 4 FVSYSVQRLFRPSASTKTFISLV-LQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPI 82 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnELVKLI-pK~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP~~~~daaPI 82 (543)
-||++||.||++++||+||++++ .+.+..||+|||+||+.|+++|++.+. +..|.++|+.||.+|+.||...+. ..+
T Consensus 72 NcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~-~~~i~~~y~~Lk~~G~~FP~~~e~-~a~ 149 (220)
T 1dvp_A 72 NCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSDK-YQAIKDTMTILKAKGHTFPELREA-DAM 149 (220)
T ss_dssp HSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCSS-CCHHHHHHHHHHHTTCCCCCCCC----C
T ss_pred ccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHhhcCccccccccc-ccc
Confidence 59999999999999999999999 777899999999999999999998765 889999999999999999998543 345
Q ss_pred CC
Q 009098 83 FT 84 (543)
Q Consensus 83 ~T 84 (543)
++
T Consensus 150 f~ 151 (220)
T 1dvp_A 150 FT 151 (220)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 14
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=99.60 E-value=3.2e-16 Score=145.01 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=59.6
Q ss_pred CCchhHHHhhhcHHHHHH-HHHhh-cCC--CHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcC
Q 009098 4 FVSYSVQRLFRPSASTKT-FISLV-LQP--DMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYG 69 (543)
Q Consensus 4 ~cgYpVH~eIAskeFLnE-LVKLI-pK~--~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kG 69 (543)
=||+.||.||++|+||+| |+|++ +++ +..||+|||+||++|+++|++.++ ++.|.++|++||++|
T Consensus 84 NCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~-l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 84 NCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVD-VSEVKEVYLDLVKKG 152 (152)
T ss_dssp HSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCC-CHHHHHHHHHHHHC-
T ss_pred hcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHCc
Confidence 399999999999999998 99999 764 358999999999999999999876 899999999999998
No 15
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00017 Score=61.65 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcCCCC-C-ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHHHHhcC
Q 009098 128 MRDVMELLSDMLQAVNPSD-R-EAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG 205 (543)
Q Consensus 128 VrnNvkLLsEML~~~~Pg~-~-~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd~i~sG 205 (543)
-..||+.|-++|...+|.. - +..+++-|++||.+|-.+||+|.+||+...... ++++.+|+.|.++..-|+.+...
T Consensus 8 q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 8 QKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp THHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999987733 2 567788899999999999999999999988732 36789999999999999999854
Q ss_pred C
Q 009098 206 L 206 (543)
Q Consensus 206 ~ 206 (543)
+
T Consensus 86 s 86 (88)
T 2pjw_H 86 A 86 (88)
T ss_dssp T
T ss_pred h
Confidence 3
No 16
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0084 Score=51.50 Aligned_cols=74 Identities=14% Similarity=0.284 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHHHHhcC
Q 009098 130 DVMELLSDMLQAVNP-SDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG 205 (543)
Q Consensus 130 nNvkLLsEML~~~~P-g~~~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd~i~sG 205 (543)
+||-||...++.+.. +..+..+++-|++||.+|-.+||||.+.+++...- -+.++++||.|..+..-||+|...
T Consensus 9 d~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K--~~~L~~mn~Kls~a~rlYD~lLE~ 83 (91)
T 2pjw_V 9 DSIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQK--YNTLIEMNGKISEIMNIYDRLLEQ 83 (91)
T ss_dssp HHHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665432 23446688899999999999999999999987652 236789999999999999998743
No 17
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=86.74 E-value=1.7 Score=37.67 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHH
Q 009098 124 SLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 200 (543)
Q Consensus 124 ELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd 200 (543)
-|+..+..|++|-+=+....-.+.....|..++.|+.+.-.|+++|++.|.+.+|.-.-. =.|.|.|++|=+--.
T Consensus 5 f~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~y--E~LQDkL~qi~eAR~ 79 (98)
T 3f1i_H 5 FLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYY--EGLQDKLAQIRDARG 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 367788888888766555433456678899999999999999999999999876644333 344577776654433
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=79.71 E-value=3.5 Score=37.34 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHcC
Q 009098 27 LQPDMQLRDKILVLLDSWQEAFGGPGGKHP--QYYWAYEDLRRYG 69 (543)
Q Consensus 27 pK~~~~VreKILeLIQsWaeAF~~~~~klp--~i~eaY~~LK~kG 69 (543)
.+.+..+|.||..|++.|.+.|.+...-++ .+...-+.|++.|
T Consensus 95 ~~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a~ 139 (144)
T 1sz9_A 95 LLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKAS 139 (144)
T ss_dssp HTSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhhh
Confidence 456889999999999999999776423344 3555666666654
No 19
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=75.51 E-value=13 Score=31.07 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHHHHhc
Q 009098 130 DVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIAS 204 (543)
Q Consensus 130 nNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd~i~s 204 (543)
.+++.+-.||.+.+|.+...+- .-|.+|=..|.+|-+.|=.=++.+.- --.++=++|-.|-.+|.-|..+++
T Consensus 5 ~kmd~~L~~l~~aDP~~~~~D~-~el~~LE~~c~~MgplId~kLE~iDr--kh~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 5 DKMDQLLQMLQSTDPSDDQPDL-PELLHLEAMCHQMGPLIDEKLEDIDR--KHSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677788899999998775544 44778999999998888555555432 224567889999999999998764
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=75.49 E-value=0.61 Score=47.53 Aligned_cols=14 Identities=0% Similarity=-0.258 Sum_probs=9.5
Q ss_pred HHHHHHHHHhh-cCC
Q 009098 16 SASTKTFISLV-LQP 29 (543)
Q Consensus 16 keFLnELVKLI-pK~ 29 (543)
.++++++++.+ +++
T Consensus 17 ~~~~~~~~~~F~~~~ 31 (449)
T 3iot_A 17 YNGLAEVGKKFEKDT 31 (449)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcc
Confidence 46777777777 543
No 21
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=56.57 E-value=2.3 Score=43.28 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=6.3
Q ss_pred HHHHHHcCCCCC
Q 009098 62 YEDLRRYGVQFP 73 (543)
Q Consensus 62 Y~~LK~kGV~FP 73 (543)
+..+..+|+--|
T Consensus 67 ~~~~~~~G~l~~ 78 (449)
T 3iot_A 67 FGGYAQSGLLAE 78 (449)
T ss_dssp HHHHHHTTCBCC
T ss_pred HHHHHhCCCccc
Confidence 345556665443
No 22
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=48.30 E-value=1.3e+02 Score=26.60 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHH-------------------HHHHHHhHHHHHHHhhh--cCCHH
Q 009098 122 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDL-------------------VSRCRSNQKKLMQMLTT--TGDEE 180 (543)
Q Consensus 122 ~sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqEL-------------------yetCrsmQpRI~~LIee--tsDEE 180 (543)
..-|+.++..++-|.+.|..+..+ ..+.+.+.+| .+-|..+...+-.+-.. ..+.+
T Consensus 10 ~~Fl~Ea~e~L~~le~~L~~le~~---~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~ 86 (146)
T 1i5n_A 10 QTFFDEADELLADMEQHLLDLVPE---SPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTD 86 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTT---SCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 345677888888888888777432 2344555554 44555554444443332 23477
Q ss_pred HHHHhhhcchHHHHHHHHHH
Q 009098 181 LLGRGLELNDILQNLLAKHD 200 (543)
Q Consensus 181 lL~eLL~lNDdLn~VL~RYd 200 (543)
++..+|..-|.|...+..++
T Consensus 87 l~~~l~~~~D~l~~~l~~~~ 106 (146)
T 1i5n_A 87 IINLFLETKDIMQEQLDAYK 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888886664
No 23
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=37.83 E-value=1.3e+02 Score=25.89 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchh---HHHH-HHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHH
Q 009098 125 LDSMRDVMELLSDMLQAVNPSDREAVKD---EVIV-DLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 200 (543)
Q Consensus 125 LevVrnNvkLLsEML~~~~Pg~~~~~dd---ELIq-ELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd 200 (543)
|+.+-.|+..|.-|+..+ |.. .+.. +=|. +|...|..|..++-.|+.-...|.++.++-.+=-+++.+-..|.
T Consensus 12 i~t~s~niq~l~k~~~ql--GTk-rD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 12 IETFAEQSRVLEKECTKI--GSK-RDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHT--TSS-SCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCC-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888999999988 322 2222 2355 88899999999998766633468888888888888888888887
Q ss_pred HHhc
Q 009098 201 AIAS 204 (543)
Q Consensus 201 ~i~s 204 (543)
.-.+
T Consensus 89 ek~~ 92 (97)
T 1hs7_A 89 QRKS 92 (97)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 24
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=37.81 E-value=99 Score=25.37 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=28.5
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhc--CC-HHHHH-HhhhcchHHHHHHHHHHHHh
Q 009098 149 AVKDEVIVDLVSRCRSNQKKLMQMLTTT--GD-EELLG-RGLELNDILQNLLAKHDAIA 203 (543)
Q Consensus 149 ~~ddELIqELyetCrsmQpRI~~LIeet--sD-EElL~-eLL~lNDdLn~VL~RYd~i~ 203 (543)
..+.+++.+|......+..-+.+++.-. +| ++... .+-.+.+.+...+.+|..+.
T Consensus 90 ~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 148 (164)
T 2lig_A 90 PAMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNALGEALGNYARVS 148 (164)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 3456677777666666655555555432 33 43332 22334455666666665443
No 25
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=37.74 E-value=30 Score=29.76 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHhhh----cCCHHHH-HHhhhcchHHHHHHHH
Q 009098 160 SRCRSNQKKLMQMLTT----TGDEELL-GRGLELNDILQNLLAK 198 (543)
Q Consensus 160 etCrsmQpRI~~LIee----tsDEElL-~eLL~lNDdLn~VL~R 198 (543)
..|+..+..|++=|.. +.|..+- .++=.|||+||++|..
T Consensus 24 ~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rE 67 (92)
T 1x4t_A 24 PKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLRE 67 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455555555554432 2221111 3677899999999964
No 26
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=34.55 E-value=71 Score=30.93 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCc-cchhHHHHHHHHHHHHhHHHHHHHhhh
Q 009098 134 LLSDMLQAVNPSDRE-AVKDEVIVDLVSRCRSNQKKLMQMLTT 175 (543)
Q Consensus 134 LLsEML~~~~Pg~~~-~~ddELIqELyetCrsmQpRI~~LIee 175 (543)
=|..|..++.-+.+. .+-++.++++.+.|++.+.++.+||.+
T Consensus 49 AL~~MVanLT~gKkky~~~e~~~~~i~~~~~~l~~~ll~l~d~ 91 (214)
T 1o5h_A 49 ALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKK 91 (214)
T ss_dssp HHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888766553 345677999999999999999999986
No 27
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.53 E-value=1.6e+02 Score=25.84 Aligned_cols=81 Identities=10% Similarity=0.157 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHh----hhc---C-CHH--HHHHhhhcchHH
Q 009098 123 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQML----TTT---G-DEE--LLGRGLELNDIL 192 (543)
Q Consensus 123 sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LI----eet---s-DEE--lL~eLL~lNDdL 192 (543)
..|..+.+||.=|.-||..+........-.+=|.++.+.|..+=+.+-+.| +.. . +++ ---..-.|-.++
T Consensus 21 ~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF 100 (130)
T 2dnx_A 21 GNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDF 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence 568899999999999999994311111112333444444433333333322 211 0 011 111344556777
Q ss_pred HHHHHHHHHHh
Q 009098 193 QNLLAKHDAIA 203 (543)
Q Consensus 193 n~VL~RYd~i~ 203 (543)
..+|.+|.++.
T Consensus 101 ~~~L~~FQ~~Q 111 (130)
T 2dnx_A 101 SAALNNFQAVQ 111 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 28
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=34.16 E-value=38 Score=28.45 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=22.8
Q ss_pred hhhhhhHHHhh--hcHHHHHHHHHHHHHHHHHHHh
Q 009098 109 LDETMATEVET--LSFSSLDSMRDVMELLSDMLQA 141 (543)
Q Consensus 109 L~~sms~D~ek--LS~sELevVrnNvkLLsEML~~ 141 (543)
|++.+..+.+. +...|+++|+.||+.|+|--..
T Consensus 13 ldkkirseie~ikkiiaefdvvke~v~~l~ekakt 47 (95)
T 1xou_B 13 LDKKIRSEIEAIKKIIAEFDVVKESVNELSEKAKT 47 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44445555443 3378999999999999986543
No 29
>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} SCOP: a.24.2.1
Probab=29.39 E-value=2.4e+02 Score=23.28 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhc--CC-HHHHH-HhhhcchHHHHHHHHHH
Q 009098 125 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT--GD-EELLG-RGLELNDILQNLLAKHD 200 (543)
Q Consensus 125 LevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeet--sD-EElL~-eLL~lNDdLn~VL~RYd 200 (543)
|+.++..++-..+.+..+........+.++..+|...-..+..-|..|+..+ +| ++... ..-.+.+.+...+.+|.
T Consensus 53 l~~a~~~l~~a~~~~~~y~~~~~~~~~~~l~~~l~~~y~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 132 (142)
T 2asr_A 53 LDSARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAMGERFAQYA 132 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5556666666666665553222234567788888777777766777777654 34 44332 12334567777777776
Q ss_pred HHh
Q 009098 201 AIA 203 (543)
Q Consensus 201 ~i~ 203 (543)
.+.
T Consensus 133 ~~~ 135 (142)
T 2asr_A 133 LSS 135 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 30
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.95 E-value=1.4e+02 Score=27.15 Aligned_cols=89 Identities=10% Similarity=0.180 Sum_probs=49.3
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHhcC--CCCCcc--ch-hHHHHHHHHHHHHhHHHHHHHhhhcC--------C-HHH
Q 009098 116 EVETLSFSSLDSMRDVMELLSDMLQAVN--PSDREA--VK-DEVIVDLVSRCRSNQKKLMQMLTTTG--------D-EEL 181 (543)
Q Consensus 116 D~ekLS~sELevVrnNvkLLsEML~~~~--Pg~~~~--~d-dELIqELyetCrsmQpRI~~LIeets--------D-EEl 181 (543)
+++.+ ..+|+.++.+++-|..+...+- +..... .+ +.++.+....++..+.+|..|-.... . +.-
T Consensus 44 ~v~~I-~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~R 122 (180)
T 1s94_A 44 QVEEI-RAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLR 122 (180)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHH
Confidence 34444 6788888888888777744421 111111 11 23555566666666666666543321 1 111
Q ss_pred --HHHhhhcchHHHHHHHHHHHHhcC
Q 009098 182 --LGRGLELNDILQNLLAKHDAIASG 205 (543)
Q Consensus 182 --L~eLL~lNDdLn~VL~RYd~i~sG 205 (543)
-.+.-.|-..|..++.+|..+..-
T Consensus 123 ir~~q~~~L~~kf~~~m~~yq~~q~~ 148 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDYNTTQID 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224556778889999999876543
No 31
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=27.94 E-value=2.9e+02 Score=25.94 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH-------------------HhHHHHHHHhhh--cCCHHH
Q 009098 123 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCR-------------------SNQKKLMQMLTT--TGDEEL 181 (543)
Q Consensus 123 sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCr-------------------smQpRI~~LIee--tsDEEl 181 (543)
-=|+.++..+.-|.+.|-.+.. ...+.+++.+|++..+ .+...+-++-.. .-+.++
T Consensus 11 ~F~~Ea~e~L~~l~~~Ll~le~---~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~ 87 (225)
T 2lp4_A 11 TFFDEADELLADMEQHLLDLVP---ESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDI 87 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCT---TSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 3467788888888888888743 2335666666655443 333333333322 225777
Q ss_pred HHHhhhcchHHHHHHHHHH
Q 009098 182 LGRGLELNDILQNLLAKHD 200 (543)
Q Consensus 182 L~eLL~lNDdLn~VL~RYd 200 (543)
+.-+|+.-|.|...+..+.
T Consensus 88 ~~ll~~~~D~l~~~l~~~~ 106 (225)
T 2lp4_A 88 INLFLETKDIMQEQLDAYK 106 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888888888876553
No 32
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=26.70 E-value=3.4e+02 Score=24.12 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHH-------------------HHHhHHHHHHHhhh--cCCHH
Q 009098 122 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSR-------------------CRSNQKKLMQMLTT--TGDEE 180 (543)
Q Consensus 122 ~sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyet-------------------CrsmQpRI~~LIee--tsDEE 180 (543)
..=|+.++..+.-|.+.|-.+..+ ..+.++|.+|++. |..+...+-.+-.. .-+.+
T Consensus 14 ~~FleEa~E~L~~le~~Ll~le~~---~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~ 90 (144)
T 3kyj_A 14 ALYADDGAQALDAMEASLLALQAG---EDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGE 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 345677777788888877776422 2355666655444 44444444333332 22477
Q ss_pred HHHHhhhcchHHHHHHHHHHH
Q 009098 181 LLGRGLELNDILQNLLAKHDA 201 (543)
Q Consensus 181 lL~eLL~lNDdLn~VL~RYd~ 201 (543)
++..+|+.-|.|...+..++.
T Consensus 91 l~dlll~~~D~l~~lv~~~~~ 111 (144)
T 3kyj_A 91 IVEILLFASDTLRAMLEETAA 111 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 888888888888888866554
No 33
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=26.31 E-value=2.6e+02 Score=22.70 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHHhHHHHHHHhhh--cCCHHHHHHhhhcchHHHHHHHHH
Q 009098 157 DLVSRCRSNQKKLMQMLTT--TGDEELLGRGLELNDILQNLLAKH 199 (543)
Q Consensus 157 ELyetCrsmQpRI~~LIee--tsDEElL~eLL~lNDdLn~VL~RY 199 (543)
.|.+.|+.+...+-.+-.. ..+.+++..++..-|.|...+..+
T Consensus 59 ~l~~la~~lE~~l~~~r~~~~~~~~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 59 SMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4556676666554444332 234788888888889888888654
No 34
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} PDB: 3atp_A
Probab=25.72 E-value=2.7e+02 Score=23.61 Aligned_cols=53 Identities=8% Similarity=0.120 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHhhhc--CC-HHHHHH-hhhcchHHHHHHHHHHHHh
Q 009098 151 KDEVIVDLVSRCRSNQKKLMQMLTTT--GD-EELLGR-GLELNDILQNLLAKHDAIA 203 (543)
Q Consensus 151 ddELIqELyetCrsmQpRI~~LIeet--sD-EElL~e-LL~lNDdLn~VL~RYd~i~ 203 (543)
+.+++.+|...-..+..-|..++.-+ +| ++.... +-.+.+.+...+..|..+.
T Consensus 98 e~~l~~~l~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (176)
T 2d4u_A 98 STAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQN 154 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 56677777666665555555555432 34 443321 1123456666666665443
No 35
>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1vlt_A 1was_A 1wat_A 1jmw_A
Probab=25.43 E-value=2.3e+02 Score=23.59 Aligned_cols=78 Identities=8% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhc--CC-HHHHHH-hhhcchHHHHHHHHHHH
Q 009098 126 DSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT--GD-EELLGR-GLELNDILQNLLAKHDA 201 (543)
Q Consensus 126 evVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeet--sD-EElL~e-LL~lNDdLn~VL~RYd~ 201 (543)
..++..++-..+.+..+........+.++..+|...-..+..-|..|+.-+ +| ++.... .-.+.+.+...+.+|..
T Consensus 57 ~~a~~~l~~a~~~~~~y~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (146)
T 1vls_A 57 QNAKTTLAQAAAHYANFKNMTPLPAMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNALGEALGNYAR 136 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 333344444444444432211233456677777666666555566666543 33 333211 11234666666666665
Q ss_pred Hh
Q 009098 202 IA 203 (543)
Q Consensus 202 i~ 203 (543)
+.
T Consensus 137 ~~ 138 (146)
T 1vls_A 137 VS 138 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 36
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=25.32 E-value=1.3e+02 Score=23.94 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhc--CCHHHHHHhhhcchHHHHHHHHHHHHhcCC
Q 009098 155 IVDLVSRCRSNQKKLMQMLTTT--GDEELLGRGLELNDILQNLLAKHDAIASGL 206 (543)
Q Consensus 155 IqELyetCrsmQpRI~~LIeet--sDEElL~eLL~lNDdLn~VL~RYd~i~sG~ 206 (543)
+.+|...-+..|..+.+|+... .+++ .|.+.-+|..++..|.++...+
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~----vI~~SQeLD~LIn~Y~k~~~~~ 52 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKYGFTHHK----VISFSQELDRLLNLLIELKTKK 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSHH----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777788889999999764 4544 5678899999999999887544
No 37
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.26 E-value=2.9e+02 Score=23.15 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHH----HHhcCCCCCccch-hHHHHHHHHHHHHhHHHHHHHhhhcC--------C-HHH--HHHh
Q 009098 122 FSSLDSMRDVMELLSDM----LQAVNPSDREAVK-DEVIVDLVSRCRSNQKKLMQMLTTTG--------D-EEL--LGRG 185 (543)
Q Consensus 122 ~sELevVrnNvkLLsEM----L~~~~Pg~~~~~d-dELIqELyetCrsmQpRI~~LIeets--------D-EEl--L~eL 185 (543)
+.+|+.++.+++-|... |+..+.....-.+ +.++.+.-..++..+.+|..|=.... . +.- ....
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~ 97 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH 97 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Confidence 56667777766666544 4433321110011 23555555566666666665543221 1 111 2233
Q ss_pred hhcchHHHHHHHHHHH
Q 009098 186 LELNDILQNLLAKHDA 201 (543)
Q Consensus 186 L~lNDdLn~VL~RYd~ 201 (543)
-.|--.|..++.+|..
T Consensus 98 ~~L~~kf~e~m~~y~~ 113 (127)
T 1ez3_A 98 STLSRKFVEVMSEYNA 113 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566667777764
No 38
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=24.49 E-value=83 Score=31.25 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=32.8
Q ss_pred ccchhHHH-HHHHHHHHHhHHHHHHHhhhcCC-HHHHHHhhhcch
Q 009098 148 EAVKDEVI-VDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELND 190 (543)
Q Consensus 148 ~~~ddELI-qELyetCrsmQpRI~~LIeetsD-EElL~eLL~lND 190 (543)
+.++.|.+ .--+.+|..+..++..|.+.+.| |+++.-.|..|-
T Consensus 214 d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~R 258 (261)
T 3rkg_A 214 NFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANR 258 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34455554 45578899999999999999988 888887776553
No 39
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=23.31 E-value=1.1e+02 Score=27.31 Aligned_cols=83 Identities=5% Similarity=-0.024 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHHHH
Q 009098 123 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAI 202 (543)
Q Consensus 123 sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd~i 202 (543)
+||..--..+..+.++|..... ......+.+..+.+.++.+...|.+|..-...+..-.+.+.+++.|..++..+...
T Consensus 23 Helr~pL~~i~~~~~~l~~~~~--~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 100 (244)
T 3d36_A 23 HEIRNPLTAARGFIQLIEEQPL--AADKRRQYARIAIEELDRAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPL 100 (244)
T ss_dssp HHHHHHHHHHHHHHHHGGGCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCEEEEHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHH
Confidence 4555555555555555544321 11122345555556666555555555543221111123456667777777777766
Q ss_pred hcCCC
Q 009098 203 ASGLP 207 (543)
Q Consensus 203 ~sG~~ 207 (543)
.....
T Consensus 101 ~~~~~ 105 (244)
T 3d36_A 101 ANMSC 105 (244)
T ss_dssp HTTTT
T ss_pred HHhcC
Confidence 65443
No 40
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=22.41 E-value=1.3e+02 Score=23.87 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhc--CCHHHHHHhhhcchHHHHHHHHHHHHhcCC
Q 009098 155 IVDLVSRCRSNQKKLMQMLTTT--GDEELLGRGLELNDILQNLLAKHDAIASGL 206 (543)
Q Consensus 155 IqELyetCrsmQpRI~~LIeet--sDEElL~eLL~lNDdLn~VL~RYd~i~sG~ 206 (543)
+.+|...-+..|..+.+++... .++ +.|.+.-+|..++..|.++....
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~----~vI~~SQeLD~LIn~Y~k~~~~~ 52 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHGLDHD----KVLLFSRDLDKLINKFMNVKDKV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHHHHHhccc
Confidence 3567777788888999999864 444 45788999999999999887544
No 41
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.73 E-value=4.4e+02 Score=23.67 Aligned_cols=79 Identities=6% Similarity=0.058 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCCcc---c---hhHHHHHHHHHHHHhHHHHHHHhhhcCCHH-HHHHhhhcchHHH
Q 009098 122 FSSLDSMRDVMELLSDMLQAVN-PSDREA---V---KDEVIVDLVSRCRSNQKKLMQMLTTTGDEE-LLGRGLELNDILQ 193 (543)
Q Consensus 122 ~sELevVrnNvkLLsEML~~~~-Pg~~~~---~---ddELIqELyetCrsmQpRI~~LIeetsDEE-lL~eLL~lNDdLn 193 (543)
..+|..++.++.-|..+....- ...... . =++++.+....|+..+.+|..|-....++. .-...-.|-.+|.
T Consensus 15 ~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~~L~~~f~ 94 (196)
T 1fio_A 15 NRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFL 94 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 6789999999999998877732 111110 0 112444555555555556666554332211 1112223444555
Q ss_pred HHHHHHH
Q 009098 194 NLLAKHD 200 (543)
Q Consensus 194 ~VL~RYd 200 (543)
.++..|.
T Consensus 95 ~~~~~fq 101 (196)
T 1fio_A 95 KLIQDYR 101 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 42
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.44 E-value=1e+02 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHHHHHHHhh-c--CCCHHHHHHHHHHHHHHHH
Q 009098 16 SASTKTFISLV-L--QPDMQLRDKILVLLDSWQE 46 (543)
Q Consensus 16 keFLnELVKLI-p--K~~~~VreKILeLIQsWae 46 (543)
.+|...|++++ . +.++.+|.||..|+..|.+
T Consensus 86 ~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 86 PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp HHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Confidence 35777777776 2 4558999999999999985
No 43
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=21.30 E-value=2.1e+02 Score=26.71 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=35.9
Q ss_pred CCCccchhHHHHHHHHHHHHhHHHHHHHhhh--cCCHHHHHHh-hhcchHHHHHHHHH
Q 009098 145 SDREAVKDEVIVDLVSRCRSNQKKLMQMLTT--TGDEELLGRG-LELNDILQNLLAKH 199 (543)
Q Consensus 145 g~~~~~ddELIqELyetCrsmQpRI~~LIee--tsDEElL~eL-L~lNDdLn~VL~RY 199 (543)
++-+.++..++.++.+.|+...-+++.+-+- +-|-..|.++ .+..|.|.+++.+|
T Consensus 54 ~qf~~eEl~~~~~fr~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~lv~~H 111 (161)
T 3f4m_A 54 GSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHH 111 (161)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667778888888888776666666543 3464444444 44777777777666
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=21.26 E-value=1e+02 Score=25.43 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=30.6
Q ss_pred hhhcHHHHHHHHHhh-cCC--CHHHHHHHHHHHHHHHHHh
Q 009098 12 LFRPSASTKTFISLV-LQP--DMQLRDKILVLLDSWQEAF 48 (543)
Q Consensus 12 eIAskeFLnELVKLI-pK~--~~~VreKILeLIQsWaeAF 48 (543)
.|.+|+=|++||+-| |.. ++.|.+-+|+|-..|-+..
T Consensus 4 ~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V 43 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESV 43 (76)
T ss_dssp CSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999 754 5799999999988886543
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.15 E-value=1.4e+02 Score=31.58 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCccchhhcccC
Q 009098 21 TFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYG 100 (543)
Q Consensus 21 ELVKLIpK~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP~~~~daaPI~TPp~S~Pe~~~a~~~~g 100 (543)
+|-++|-|.+-.|+.||=+|=+.-.+--+....-+..++.+|++||.. ++...
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~---------------------------~~q~~ 105 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD---------------------------FAKAN 105 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---------------------------HHhhc
Q ss_pred CCCCCcchhhhhhhHHHhhhcHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHH-HHHHHHhHHHHHHHhhhcCC-
Q 009098 101 MPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDL-VSRCRSNQKKLMQMLTTTGD- 178 (543)
Q Consensus 101 SP~~~d~~L~~sms~D~ekLS~sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqEL-yetCrsmQpRI~~LIeetsD- 178 (543)
-...--..+...+...++-|.+.-.+.|. ||++|.-.|.++ -.+..+.|+-.|+ ...|+..=.|-+++.-+..+
T Consensus 106 dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q---~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~y 181 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQ---LVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDY 181 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHH---HHHHHHHHHHHHHHhcccccccchhhhhhccHHHH
Q ss_pred HHHHHHhhhcch
Q 009098 179 EELLGRGLELND 190 (543)
Q Consensus 179 EElL~eLL~lND 190 (543)
|+.+.+|+++.+
T Consensus 182 e~qqKQL~qv~a 193 (390)
T 1deq_A 182 KNQQKQLEQVIA 193 (390)
T ss_pred HHHHHHHHhhhh
No 46
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=21.11 E-value=3.2e+02 Score=21.90 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=27.0
Q ss_pred HHHHHHHHhHHHHHHHhhhcCC--HHHHHHhhhcchHHHHHHHHHHHHh
Q 009098 157 DLVSRCRSNQKKLMQMLTTTGD--EELLGRGLELNDILQNLLAKHDAIA 203 (543)
Q Consensus 157 ELyetCrsmQpRI~~LIeetsD--EElL~eLL~lNDdLn~VL~RYd~i~ 203 (543)
++-..+.....||..|+..... +.--...=.|+..++.+..+|+.++
T Consensus 47 ~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~ 95 (107)
T 2spc_A 47 DFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLK 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777766654221 1111233346677777777887765
No 47
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.94 E-value=1.2e+02 Score=28.76 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=35.6
Q ss_pred HhhhcHHHHHHHHHHH-HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhc
Q 009098 117 VETLSFSSLDSMRDVM-ELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT 176 (543)
Q Consensus 117 ~ekLS~sELevVrnNv-kLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeet 176 (543)
...++..||..+-++= ++|++++..++.-.....+.+-+..+.+....++++|-.+...+
T Consensus 35 L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l 95 (192)
T 2p22_C 35 INLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKV 95 (192)
T ss_dssp GGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4566677888888887 88888888775422222233334555555555555555544443
No 48
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=20.72 E-value=71 Score=28.35 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=20.2
Q ss_pred HHHHhh-cCCCHHHHHHHHHHHHHHHHH
Q 009098 21 TFISLV-LQPDMQLRDKILVLLDSWQEA 47 (543)
Q Consensus 21 ELVKLI-pK~~~~VreKILeLIQsWaeA 47 (543)
++++.+ ...++.+|.||..+|..|.+-
T Consensus 89 ~~~~~~~~~~~~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 89 EVLGRINQEFPRDLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcc
Confidence 333333 445789999999999999864
No 49
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.50 E-value=1e+02 Score=29.22 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHhhhcCC--HHHHHHhhhcchHHHHHHHH
Q 009098 151 KDEVIVDLVSRCRSNQKKLMQMLTTTGD--EELLGRGLELNDILQNLLAK 198 (543)
Q Consensus 151 ddELIqELyetCrsmQpRI~~LIeetsD--EElL~eLL~lNDdLn~VL~R 198 (543)
--|+|.||..-|.+.-.++++-|..+.| ...-.+-+.+.++|.+.|..
T Consensus 122 paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 122 PAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888877777777777665 44445666777777666643
Done!