Query 009101
Match_columns 543
No_of_seqs 195 out of 1693
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 8.7E-69 3E-73 573.4 33.9 391 35-501 2-409 (429)
2 3qe7_A Uracil permease; uracil 74.0 26 0.00087 36.8 12.3 143 335-496 44-201 (429)
3 1pw4_A Glycerol-3-phosphate tr 36.7 2.9E+02 0.0099 27.2 12.2 39 65-103 272-310 (451)
4 3o7q_A L-fucose-proton symport 13.7 8.5E+02 0.029 23.5 13.4 100 68-181 49-152 (438)
5 1pd6_A Cardiac MYBP-C;, myosin 12.0 69 0.0024 25.6 1.0 14 7-20 5-18 (104)
6 1pw4_A Glycerol-3-phosphate tr 11.1 6.5E+02 0.022 24.5 8.4 55 47-103 27-84 (451)
7 4aps_A DI-OR tripeptide H+ sym 10.7 1.1E+03 0.038 23.1 12.2 37 67-103 35-76 (491)
8 3o7q_A L-fucose-proton symport 9.9 5.1E+02 0.018 25.2 7.0 61 43-103 256-317 (438)
9 2kxc_B ESPF-like protein; IRTK 8.9 1.4E+02 0.0047 21.3 1.5 17 3-19 23-39 (48)
10 1z06_A RAS-related protein RAB 8.6 75 0.0026 27.8 0.0 13 6-18 2-14 (189)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=8.7e-69 Score=573.37 Aligned_cols=391 Identities=25% Similarity=0.404 Sum_probs=349.0
Q ss_pred cccceecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh-cCCcceEec
Q 009101 35 QQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF-GTRLPTVMG 113 (543)
Q Consensus 35 ~~~~y~~~~~pp~~~~~~~GlQh~l~m~~~~i~vPiila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~~-G~rlPiv~G 113 (543)
.|+.|++|||+|+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|.++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 46789999999999999999999999999999999997 7886 48999999999999987 899999999
Q ss_pred cchhhHHHHHHHHhhcCCCCCCCccchhhccHHHHHHHHHHHHHHHHHHhhh--hhH-HHHhhhcCccchHHHHHHHHHH
Q 009101 114 PSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS--GAW-GNLARFFSPIVIVPFVCVVGLG 190 (543)
Q Consensus 114 psf~~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lv~Gli~illg~~--gl~-~~l~~~~Pp~V~G~~l~lIGl~ 190 (543)
++|+|++++..+.+ ++|++++|+++++|+++++++++ +++ +|++|+|||+|+|.++++||++
T Consensus 71 ~sfafi~~~~~i~~---------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~ 135 (429)
T 3qe7_A 71 SSFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 135 (429)
T ss_dssp ECGGGHHHHHHHGG---------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence 99999998877653 35999999999999999999987 554 7999999999999999999999
Q ss_pred HHHhhhcccc-----------chhhhHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009101 191 LFMRGFPLLG-----------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV 259 (543)
Q Consensus 191 l~~~~~~~~~-----------~~~~i~l~~l~l~i~l~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~lg~~~~~~~~ 259 (543)
+++.++++.+ .++.+++.+++++++++++.| +++|++++|+|+++||++++.+|..
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~~------ 202 (429)
T 3qe7_A 136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGIV------ 202 (429)
T ss_dssp HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcCC------
Confidence 9998876532 257788888888877766554 4578999999999999999999853
Q ss_pred CcccccccccCccccCCCCCccccCccccccccccchhHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCCCCCcchh
Q 009101 260 PEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIG 339 (543)
Q Consensus 260 ~~~~~~~~~vd~~~~v~~a~~~~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~eslg~~~av~~~~~~~~~~~~~~~r~l~ 339 (543)
|++. +.+++|+++|. |+.|+||++++..++++++++++|++|++.++++.++++.+++++.||++.
T Consensus 203 ----------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~ 268 (429)
T 3qe7_A 203 ----------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 268 (429)
T ss_dssp ----------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred ----------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence 4442 56688999995 567899999999999999999999999999999999866556789999999
Q ss_pred hhchHHHHhhhcCCCCccccccchhhHHhhhccCcchHHHHHHHHHHHHHHhhhHHHHHHhCCchhHHHHHHHHHHHHHH
Q 009101 340 LQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAA 419 (543)
Q Consensus 340 ~dGl~~ilsglfG~~~~tt~s~en~G~i~~Tgv~SR~~~~~ag~~li~l~~~pk~~~ll~~IP~~Vlgg~li~~fg~i~~ 419 (543)
+||++|+++|+||++|.|+|+ ||+|++..||++||++.+.+|+++++++++||++++++.||.||+||+++++||++..
T Consensus 269 adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~ 347 (429)
T 3qe7_A 269 ANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGA 347 (429)
T ss_dssp HHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhH--hhccCCCcccchhhhhHHHhhhhhhHhhhhccccCCCCCccccCccccchhhHhccchhHHHHHHHHHHhhh
Q 009101 420 VGITFI--QFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNT 497 (543)
Q Consensus 420 ~Gi~~l--~~~~~~~~rn~~Ivg~sl~~Gl~~P~~~~~~~~~~~~~~~~~~~~~lp~~l~~~l~~gi~~g~l~aiiLn~~ 497 (543)
+|+|++ +++|++++||.+|+|+++.+|++.-. +| ++.+..||+++|++++++||++
T Consensus 348 ~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~ 405 (429)
T 3qe7_A 348 SGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLI 405 (429)
T ss_dssp HHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHH
Confidence 999999 89999988999999999999997421 22 3456789999999999999999
Q ss_pred cCCC
Q 009101 498 LDAR 501 (543)
Q Consensus 498 ~~~~ 501 (543)
+|++
T Consensus 406 l~~~ 409 (429)
T 3qe7_A 406 FKLI 409 (429)
T ss_dssp HTCC
T ss_pred hcCc
Confidence 9964
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=73.97 E-value=26 Score=36.77 Aligned_cols=143 Identities=15% Similarity=0.057 Sum_probs=74.3
Q ss_pred CcchhhhchHHHHhhhcCCCCccccccchhhH----HhhhccCc----chHHHHHHHHHHHHHHh-hhH--HHHHHhCCc
Q 009101 335 SRSIGLQGIGMLVEGIFGSVVGTTASVENVGL----LGLTHIGS----RRVVQISTAFMIFFSIF-GKF--GAFFASIPL 403 (543)
Q Consensus 335 ~r~l~~dGl~~ilsglfG~~~~tt~s~en~G~----i~~Tgv~S----R~~~~~ag~~li~l~~~-pk~--~~ll~~IP~ 403 (543)
+.++.+.|++|++=++++..+.-.+.+.|-.. ....+ .+ --+.+.+|++.++++++ .|+ ..+...+|.
T Consensus 44 ~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Pp 122 (429)
T 3qe7_A 44 ATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPP 122 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCC
Confidence 36889999999998887544432222233322 11111 21 11346788888888876 233 368999998
Q ss_pred hhHHHHHHHHHHHHHHHHhHhHhhc----cCCCcccchhhhhHHHhhhhhhHhhhhccccCCCCCccccCccccchhhHh
Q 009101 404 PIFAAIYCVLLGIVAAVGITFIQFA----NNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTI 479 (543)
Q Consensus 404 ~Vlgg~li~~fg~i~~~Gi~~l~~~----~~~~~rn~~Ivg~sl~~Gl~~P~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 479 (543)
.|+|.+...+-=.+.-.+++..... ++.+..+..+..+++++-+..+.+...+ + .....+
T Consensus 123 vviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~---------------~-~~~aiL 186 (429)
T 3qe7_A 123 AAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGF---------------L-AIIPIL 186 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTT---------------T-TTHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhccc---------------c-hhhHHH
Confidence 8888876543222233333433211 1222244444444555444344432221 1 111222
Q ss_pred ccchhHHHHHHHHHHhh
Q 009101 480 FSSPPTVAMIVGTVLDN 496 (543)
Q Consensus 480 l~~gi~~g~l~aiiLn~ 496 (543)
-++++|.+++..+..
T Consensus 187 --igivvg~~~a~~~G~ 201 (429)
T 3qe7_A 187 --IGVLVGYALSFAMGI 201 (429)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcC
Confidence 257777777777764
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=36.72 E-value=2.9e+02 Score=27.17 Aligned_cols=39 Identities=10% Similarity=-0.137 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009101 65 TVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (543)
Q Consensus 65 ~i~vPiila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~ 103 (543)
....|..+.+..|.++.+...+.....+...++.++-..
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577766657888877666655555555666665554
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=13.67 E-value=8.5e+02 Score=23.47 Aligned_cols=100 Identities=7% Similarity=-0.158 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH----hcCCcceEeccchhhHHHHHHHHhhcCCCCCCCccchhhc
Q 009101 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRH 143 (543)
Q Consensus 68 vPiila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~----~G~rlPiv~Gpsf~~i~~~~~i~~~~g~~~~~~~~~~~~~ 143 (543)
.|.+ .+..|++..+...+.+...+...++.++.+. +|.|..++.+.....+........... .
T Consensus 49 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------------~ 115 (438)
T 3o7q_A 49 LPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------------M 115 (438)
T ss_dssp HHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT------------T
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc------------c
Confidence 3543 4457999998888888877777888887765 565544443333222221111000110 2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchH
Q 009101 144 TIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIV 181 (543)
Q Consensus 144 ~~~~~~ga~lv~Gli~illg~~gl~~~l~~~~Pp~V~G 181 (543)
++.....+.++.|+..-..-.. ....+.+.+|+.--+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~ 152 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGH 152 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHH
Confidence 3455555566666655443322 235667788875443
No 5
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=12.03 E-value=69 Score=25.55 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCCC
Q 009101 7 HHPPPPPQAAPPSL 20 (543)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (543)
||+||+|+..+|..
T Consensus 5 ~~~~~~~~~~~p~f 18 (104)
T 1pd6_A 5 HHHSSMDEKKSTAF 18 (104)
T ss_dssp ------CCSTTSSC
T ss_pred cccCCCCccCCCEE
Confidence 56666777777765
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=11.15 E-value=6.5e+02 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009101 47 WPQALLLAFQHYIVMLGT---TVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (543)
Q Consensus 47 ~~~~~~~GlQh~l~m~~~---~i~vPiila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~ 103 (543)
++......+.+++..+.. ....|.+..+ . .+..+...+.+...+...++.++-+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~ 84 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGS 84 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444555555444321 2334544433 5 78888888777777777777777765
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=10.70 E-value=1.1e+03 Score=23.14 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=28.3
Q ss_pred HHHHHHHHh-----cCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009101 67 LISSTLVPL-----MGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (543)
Q Consensus 67 ~vPiila~a-----~Gl~~~~~~~li~~tl~~sGI~Tllq~~ 103 (543)
..|..+.+. .|++..+...+.+...+...++.++.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 7999988888888888888888887764
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=9.88 E-value=5.1e+02 Score=25.17 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009101 43 SNPPWPQALLLAFQHYIVMLGTTVLISST-LVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (543)
Q Consensus 43 ~~pp~~~~~~~GlQh~l~m~~~~i~vPii-la~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~ 103 (543)
+++.....++..+-............|.. +.+..|.+..+...+.....++..++.++-..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333344666 66666888876666555555555555555443
No 9
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=8.90 E-value=1.4e+02 Score=21.32 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 009101 3 ETAGHHPPPPPQAAPPS 19 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (543)
|+++|.|+-|-..+|++
T Consensus 23 ~~s~~~p~rPa~P~Pt~ 39 (48)
T 2kxc_B 23 NMAEHIPPAPNWPAPTP 39 (48)
T ss_pred hhhccCCCCCCCCCCCC
Confidence 67888776655555544
No 10
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=8.58 E-value=75 Score=27.83 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q 009101 6 GHHPPPPPQAAPP 18 (543)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (543)
||||+.|+.+++.
T Consensus 2 ~~~~~~~~~~~~~ 14 (189)
T 1z06_A 2 GHHHHHHGSLVPR 14 (189)
T ss_dssp -------------
T ss_pred CccccccccccCC
Confidence 6777766655544
Done!