Query 009102
Match_columns 543
No_of_seqs 191 out of 503
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 20:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 3.5E-83 7.7E-88 645.0 -0.1 318 25-343 2-319 (319)
2 COG3534 AbfA Alpha-L-arabinofu 100.0 1.2E-37 2.6E-42 317.5 28.5 428 25-534 3-499 (501)
3 PF01229 Glyco_hydro_39: Glyco 99.2 1E-09 2.3E-14 119.9 21.2 313 75-423 42-391 (486)
4 PF11790 Glyco_hydro_cc: Glyco 98.7 1.3E-07 2.8E-12 94.0 11.4 129 186-343 63-202 (239)
5 PF02055 Glyco_hydro_30: O-Gly 98.4 2.7E-05 5.9E-10 85.0 21.9 237 174-436 206-473 (496)
6 smart00813 Alpha-L-AF_C Alpha- 98.4 7.9E-06 1.7E-10 78.2 14.2 111 325-437 17-139 (189)
7 PF00150 Cellulase: Cellulase 98.3 2.8E-05 6.1E-10 78.2 16.6 218 74-324 22-251 (281)
8 PF06964 Alpha-L-AF_C: Alpha-L 98.2 2.4E-05 5.3E-10 74.0 12.1 103 325-437 17-127 (177)
9 PF12891 Glyco_hydro_44: Glyco 98.1 8.3E-06 1.8E-10 79.6 8.4 95 173-271 104-237 (239)
10 PF07745 Glyco_hydro_53: Glyco 97.8 0.00024 5.3E-09 73.5 13.7 199 71-322 22-242 (332)
11 COG5520 O-Glycosyl hydrolase [ 97.8 0.0016 3.6E-08 66.3 17.9 213 176-426 156-375 (433)
12 PF12876 Cellulase-like: Sugar 97.6 0.00012 2.6E-09 61.1 5.8 75 187-269 9-88 (88)
13 PF14587 Glyco_hydr_30_2: O-Gl 97.3 0.013 2.9E-07 61.3 17.5 166 137-320 109-311 (384)
14 smart00633 Glyco_10 Glycosyl h 96.7 0.35 7.5E-06 48.4 21.3 66 128-201 12-86 (254)
15 COG3867 Arabinogalactan endo-1 96.5 0.39 8.5E-06 48.4 19.2 212 73-321 63-287 (403)
16 COG3664 XynB Beta-xylosidase [ 95.8 0.08 1.7E-06 55.5 11.0 180 189-393 105-300 (428)
17 PRK10150 beta-D-glucuronidase; 94.3 0.65 1.4E-05 52.5 14.0 66 189-271 409-474 (604)
18 PF00332 Glyco_hydro_17: Glyco 91.2 1 2.3E-05 46.5 9.1 196 74-324 14-242 (310)
19 PF02836 Glyco_hydro_2_C: Glyc 86.6 6.8 0.00015 40.0 11.2 81 135-230 62-151 (298)
20 COG5309 Exo-beta-1,3-glucanase 80.1 31 0.00066 34.7 12.0 77 136-227 91-168 (305)
21 PF14488 DUF4434: Domain of un 69.7 16 0.00034 34.2 6.9 91 132-240 65-161 (166)
22 TIGR03356 BGL beta-galactosida 67.9 13 0.00028 40.2 6.7 102 78-201 59-165 (427)
23 KOG2566 Beta-glucocerebrosidas 62.5 2.2E+02 0.0047 30.4 15.7 55 371-426 432-488 (518)
24 PF03198 Glyco_hydro_72: Gluca 58.5 2.3E+02 0.005 29.3 14.0 128 135-272 82-217 (314)
25 PF02057 Glyco_hydro_59: Glyco 54.5 1.1E+02 0.0025 34.8 11.1 182 183-419 168-368 (669)
26 PF02449 Glyco_hydro_42: Beta- 50.7 64 0.0014 34.0 8.3 55 79-155 16-70 (374)
27 PF02449 Glyco_hydro_42: Beta- 50.2 93 0.002 32.8 9.5 109 260-381 251-365 (374)
28 PRK15014 6-phospho-beta-glucos 46.2 47 0.001 36.5 6.6 102 79-200 75-181 (477)
29 PRK09852 cryptic 6-phospho-bet 38.9 63 0.0014 35.5 6.1 106 75-201 74-184 (474)
30 KOG4701 Chitinase [Cell wall/m 36.6 5.5E+02 0.012 27.3 14.2 32 131-162 89-120 (568)
31 PF00331 Glyco_hydro_10: Glyco 36.6 5E+02 0.011 26.8 18.5 222 128-381 55-317 (320)
32 PF02806 Alpha-amylase_C: Alph 36.5 61 0.0013 26.6 4.4 15 519-533 79-93 (95)
33 PLN02849 beta-glucosidase 36.3 67 0.0015 35.6 5.9 68 132-201 119-191 (503)
34 PRK13511 6-phospho-beta-galact 36.2 73 0.0016 35.0 6.1 100 79-201 60-164 (469)
35 PRK09589 celA 6-phospho-beta-g 35.2 74 0.0016 35.0 6.0 103 79-201 73-180 (476)
36 PRK09525 lacZ beta-D-galactosi 33.6 2.1E+02 0.0046 34.7 9.9 82 135-230 397-482 (1027)
37 PLN02814 beta-glucosidase 33.3 79 0.0017 35.1 5.8 102 79-201 83-189 (504)
38 PRK09593 arb 6-phospho-beta-gl 31.3 1.1E+02 0.0023 33.8 6.4 68 132-201 114-186 (478)
39 TIGR01233 lacG 6-phospho-beta- 30.3 1E+02 0.0023 33.7 6.1 100 79-201 59-163 (467)
40 PLN02998 beta-glucosidase 29.5 91 0.002 34.5 5.5 68 132-201 122-194 (497)
41 PRK10340 ebgA cryptic beta-D-g 29.2 2.2E+02 0.0047 34.6 9.0 81 135-230 381-469 (1021)
42 smart00632 Aamy_C Aamy_C domai 27.8 3.2E+02 0.0069 21.9 7.3 20 404-426 10-29 (81)
43 PF10566 Glyco_hydro_97: Glyco 27.7 1.1E+02 0.0024 31.0 5.3 129 128-268 28-157 (273)
44 PF00232 Glyco_hydro_1: Glycos 26.9 71 0.0015 34.8 4.1 67 132-201 99-170 (455)
45 COG4130 Predicted sugar epimer 26.4 6.3E+02 0.014 24.9 11.4 106 135-258 52-165 (272)
46 KOG0564 5,10-methylenetetrahyd 25.0 2E+02 0.0042 31.7 6.7 158 39-225 12-179 (590)
47 cd06543 GH18_PF-ChiA-like PF-C 24.7 62 0.0013 33.2 2.9 46 142-197 219-265 (294)
48 PF01522 Polysacc_deac_1: Poly 24.0 3.5E+02 0.0076 22.7 7.3 78 131-229 17-94 (123)
49 PF03556 Cullin_binding: Culli 22.4 1E+02 0.0022 27.1 3.4 43 127-183 75-117 (117)
50 TIGR03006 pepcterm_polyde poly 21.7 8.2E+02 0.018 24.5 12.0 101 134-258 30-133 (265)
51 COG4124 ManB Beta-mannanase [C 20.5 5.9E+02 0.013 26.8 8.9 114 188-321 181-299 (355)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=3.5e-83 Score=645.01 Aligned_cols=318 Identities=55% Similarity=1.066 Sum_probs=156.1
Q ss_pred eEEEEecCCCcccccCCCeeEEEeeccCCCCCCCCCCCCCCCcccCCCCCcHHHHHHHHHcCCceEecCCcccceeeEec
Q 009102 25 RVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDV 104 (543)
Q Consensus 25 ~~~v~i~~~~~~~~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~l~~l~k~L~p~~lRiGG~~~D~~~~~~ 104 (543)
.++|.|+...+++++|++|+|+|+||||++||+|++|+||++|++|+||+|++|++++|+|+|.+||+||+.||+++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~ 81 (319)
T PF03662_consen 2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT 81 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHHHh
Q 009102 105 GDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTIS 184 (543)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~ 184 (543)
+....||.|+.++++.+|||+++||++++||++++|++++|+++|||||++.|++...++.+.|+||++||+++++|+.+
T Consensus 82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~s 161 (319)
T PF03662_consen 82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTAS 161 (319)
T ss_dssp ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEES
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 98888999998888999999999999999999999999999999999999998754444456789999999999999999
Q ss_pred CCcccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCCCHHHHHHHHhhhCCCcccEE
Q 009102 185 MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGV 264 (543)
Q Consensus 185 ~g~~i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~~~~w~~~fl~~~~~~~id~v 264 (543)
+||+|++|||||||+++ +++++++++||++|+.+||++|+++|++..++|+++||+++++.+|+++||+++++..||+|
T Consensus 162 kgy~I~~WELGNEl~g~-g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~v 240 (319)
T PF03662_consen 162 KGYNIDSWELGNELNGS-GVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAV 240 (319)
T ss_dssp S-GGG--------HHHH-SSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEE
T ss_pred cCCCccccccccccCCC-CCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEE
Confidence 99999999999999997 88899999999999999999999999887789999999998899999999999887569999
Q ss_pred EEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHHHHHHhh
Q 009102 265 THHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLG 343 (543)
Q Consensus 265 s~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~G~~~vsdtf~~alw~lD~Lg 343 (543)
|||+|++++|+|++++++|++|++||++..+++.+++++++++|++++|||||+++|++|+++|||||+++|||||+||
T Consensus 241 T~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG 319 (319)
T PF03662_consen 241 TWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG 319 (319)
T ss_dssp EEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred EEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence 9999999888888889999999999999999999999999999999999999999999999999999999999999997
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=317.51 Aligned_cols=428 Identities=17% Similarity=0.167 Sum_probs=299.0
Q ss_pred eEEEEecCCCcccccCCCeeEEEeeccCCCCCCCCCCCCCCCcccCCCCCcHHHHHHHHHcCCceEec-CCcccceeeEe
Q 009102 25 RVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIRI-GGSLQDQVLYD 103 (543)
Q Consensus 25 ~~~v~i~~~~~~~~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~l~~l~k~L~p~~lRi-GG~~~D~~~~~ 103 (543)
..+++|+++..++.||.+++|.++| +.++|+|++++.+.+++++.+..+++++.++|.|.+|+||+ |||+.|.|+|.
T Consensus 3 ~a~~~v~~d~~ig~I~k~iYG~F~E--HlGr~vY~Giyepd~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~We 80 (501)
T COG3534 3 KARAVVDTDYTIGKIDKRIYGHFIE--HLGRAVYEGIYEPDSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWE 80 (501)
T ss_pred ccceeechhhccCcchhhhhhHHHH--hhccceeeeeecCCCCCcchhhhHHHHHHHHHhcCCceeecCCcccccccccc
Confidence 4567899999999999999999999 68999999999998888888866999999999999999997 99999999999
Q ss_pred cCCCCCCCCCccc------CCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHH
Q 009102 104 VGDLKAPCHPFRK------MKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARD 177 (543)
Q Consensus 104 ~~~~~~~~~p~~~------~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~ 177 (543)
++.++...||.+. .|++.||+ ++|++||+.+|+++++.+|++.+ ...+|++
T Consensus 81 DGIGP~e~Rp~rldlaW~t~EtN~~Gt----------~EF~~~~e~iGaep~~avN~Gsr-------------gvd~ar~ 137 (501)
T COG3534 81 DGIGPREERPRRLDLAWGTTETNEFGT----------HEFMDWCELIGAEPYIAVNLGSR-------------GVDEARN 137 (501)
T ss_pred cCcCchhhCchhhcccccccccccccH----------HHHHHHHHHhCCceEEEEecCCc-------------cHHHHHH
Confidence 9988666677643 37888887 99999999999999999999886 3789999
Q ss_pred HHHHHH----------------hCCcccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccC
Q 009102 178 FLKYTI----------------SMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPG 241 (543)
Q Consensus 178 ~l~y~~----------------~~g~~i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~ 241 (543)
||+||. +++++|++|+||||.|+.|++|+ .++.+|++-..+++++++-+.|.+ +..+.|.+
T Consensus 138 ~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~-~~a~EY~~~A~e~~k~~k~~d~t~--e~~v~g~a 214 (501)
T COG3534 138 WVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGH-KTAPEYGRLANEYRKYMKYFDPTI--ENVVCGSA 214 (501)
T ss_pred HHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCccccc-ccCHHHHHHHHHHHHHHhhcCccc--cceEEeec
Confidence 999984 23578999999999999999987 577888888888888888777664 23344433
Q ss_pred C---CCCHHHHHHHHhhhCCCcccEEEEEeecCCCCCCchhhhcccChhH-hhHHHHHHHHHHHHHH-HhCCC--CcEEE
Q 009102 242 G---FFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQR-LSRVSETFGNLKQTIE-KHGPW--ASAWV 314 (543)
Q Consensus 242 ~---~~~~~w~~~fl~~~~~~~id~vs~H~Y~~~~g~d~~~~~~~l~~~~-l~~~~~~~~~~~~~~~-~~~~~--~~~wl 314 (543)
+ ..++.|.+.+|+++.+. +|++|.|+|..+...+ +.+. +..+. ++..+..+...-..++ +..++ ..+-+
T Consensus 215 ~~~n~~~~~W~~~vl~~~~e~-vD~ISlH~Y~Gn~~~~--t~ny-~~~~~~~~~~i~~l~~~~d~Vk~k~r~kk~v~l~f 290 (501)
T COG3534 215 NGANPTDPNWEAVVLEEAYER-VDYISLHYYKGNATDD--TPNY-WAKSLKLDRYIDDLIKKIDYVKAKKRSKKRVGLSF 290 (501)
T ss_pred CCCCCCchHHHHHHHHHHhhh-cCeEEEEEecCccccC--cHHH-HHHHhhhhHHHHHHHHHHHHHHhccccccceeEEE
Confidence 2 25779999999988885 9999999996442211 1111 11110 1222222222222222 34443 34567
Q ss_pred cccccccCCC------------------CCCcchHHHHHHHHHHHhhhhhccCCeE--EEe-eeccCccccc-ccC-CCC
Q 009102 315 GESGGAYNSG------------------GRHVSNTFVNSFWYLDQLGMSSKYNTKV--YCR-QTLVGGNYGL-LNA-TTF 371 (543)
Q Consensus 315 ~Et~sa~~~G------------------~~~vsdtf~~alw~lD~Lg~aA~~g~~v--v~~-qtl~Gg~Y~l-~~~-~~~ 371 (543)
.|+|..|..- ..++.|+..+|. .|....+..-.| .|. |. +.---.+ ... +..
T Consensus 291 DEWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~----~l~~f~k~sdrV~iAniAQl-VNvi~ai~~ekgg~~ 365 (501)
T COG3534 291 DEWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGS----LLNIFHKHSDRVRIANIAQL-VNVLAAIMTEKGGPA 365 (501)
T ss_pred ecccceeecchhhhccccCCCCCccccccchHHHHHHHHH----HHHHHHhhcceeehhHHHHH-HHHhhheeecCCCcc
Confidence 8999877541 013344444443 233333332222 221 21 0000001 111 124
Q ss_pred CcCcchhHHHHHHHhcCCceeEeecCCC----------CeeEEEEEEecCCCCEEEEEEeCCCCCceEEEEEecccccee
Q 009102 372 IPNPDYYSALLWHRLMGKGVLSVATDGS----------SSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMNMKLT 441 (543)
Q Consensus 372 ~p~P~Yy~~lL~~~l~G~~vl~~~~~~~----------~~l~~YA~c~~~~g~vtv~lIN~~~~~~~~v~v~~~~~~~~~ 441 (543)
...|.||+..+++.+.....|.+.++++ +.+.+-|.+....|.++++++|.+.+++..++|++.|+
T Consensus 366 ~~~~~y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~l~i~vvN~~~~d~~~~~i~l~G~---- 441 (501)
T COG3534 366 WLTPIYYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGELTIFVVNRALEDALKLNISLNGL---- 441 (501)
T ss_pred eeeehhhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCeEEEEEEeccccccccceEEeccc----
Confidence 5679999999999998888888776432 46777777777668999999999999999999999885
Q ss_pred ccccccCCCCcccccccccccccCCccCCCCceeEEEEeecCCCCcccceEEECCcccccCCCCCCCCCCceec-----C
Q 009102 442 VKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRV-----D 516 (543)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~Lt~~~~~l~s~~v~LNG~~l~~~~~g~~p~l~p~~~-----~ 516 (543)
...+.++-++||+.+ +... |. + ...+...|++- +
T Consensus 442 ----------------------------~~a~~~~~~~lt~~~--~~a~----Nt----~---d~p~~V~p~~~~~~~vs 480 (501)
T COG3534 442 ----------------------------KKAKSAEHQVLTGDD--LNAT----NT----F---DAPENVVPVPGKGATVS 480 (501)
T ss_pred ----------------------------cccceeeEEEEecCc--cccc----cC----C---CCCCceecccCCCcccc
Confidence 012467778888763 2221 11 0 11344444433 2
Q ss_pred C-CCceEEccceEEEEEec
Q 009102 517 V-NSPIYITHLSIAFIVFP 534 (543)
Q Consensus 517 ~-~~~i~lpp~S~~F~vi~ 534 (543)
. .....+||+|+.++.|.
T Consensus 481 ~~~l~~~~~~~S~~virl~ 499 (501)
T COG3534 481 KNELTLDLPPLSVSVIRLK 499 (501)
T ss_pred CCceeEecCCceEEEEEEe
Confidence 2 45688999999999874
No 3
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.21 E-value=1e-09 Score=119.87 Aligned_cols=313 Identities=16% Similarity=0.214 Sum_probs=156.9
Q ss_pred cHHHHHHHHHcCCceEecCCcccceee-EecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee
Q 009102 75 HPLLANAIQAFQSLRIRIGGSLQDQVL-YDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (543)
Q Consensus 75 ~~~l~~l~k~L~p~~lRiGG~~~D~~~-~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN 153 (543)
+..|+.+.+.+|--|||+=|-+.|.+. +.... ++.. ..+.-+..|++++|..+.|.++++-|-
T Consensus 42 q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~-----------~~~~-----~~Ynf~~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 42 QEQLRELQEELGFRYVRFHGLFSDDMMVYSESD-----------EDGI-----PPYNFTYLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp HHHHHHHHCCS--SEEEES-TTSTTTT-EEEEE-----------TTEE-----EEE--HHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHhccCceEEEEEeeccCchhhccccc-----------cCCC-----CcCChHHHHHHHHHHHHcCCEEEEEEE
Confidence 444555666677899999887766444 32210 0100 013346779999999999999999886
Q ss_pred cCCCCccccCCCC-CCCCC-----hHH-------HHHHHHHHH-hCCc-cc--ceeeeeccCCCCCCCCCCCCHHHHHHH
Q 009102 154 ALHGRHNIRHNAW-GGAWD-----SNN-------ARDFLKYTI-SMGY-QI--DSWEYGNELSGRTSIGASVDAELYGKD 216 (543)
Q Consensus 154 ~~~~~~~~~~~~~-~~~W~-----~~~-------A~~~l~y~~-~~g~-~i--~~wElGNEpd~~~~~g~~~t~~~Ya~d 216 (543)
+.... .+.+.. .-.|. +.. ..++++... ..|. .| -+||+.||||+. .....-+.++|.+-
T Consensus 106 f~p~~--~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~-~f~~~~~~~ey~~l 182 (486)
T PF01229_consen 106 FMPMA--LASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK-DFWWDGTPEEYFEL 182 (486)
T ss_dssp SB-GG--GBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST-TTSGGG-HHHHHHH
T ss_pred echhh--hcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc-cccCCCCHHHHHHH
Confidence 53321 111100 01111 122 233333322 2221 13 367999999986 22222367889999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEccCCC-CCHHHHHHHHhhh--CCCcccEEEEEeecCCCCCCc-hhhhcccChhHhhHH
Q 009102 217 LINLKNIINELYKNSSSKPTILAPGGF-FDQEWYAKFLQVS--GSNVVNGVTHHIYNLGPGVDP-NLVSKILNPQRLSRV 292 (543)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~lvgP~~~-~~~~w~~~fl~~~--~~~~id~vs~H~Y~~~~g~d~-~~~~~~l~~~~l~~~ 292 (543)
|+..+++||++.|+ .++.||+.. ....|..+|++-. ..-.+|++|+|.|+.+.+.+. ......+. ..++.
T Consensus 183 y~~~~~~iK~~~p~----~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~--~~~~~ 256 (486)
T PF01229_consen 183 YDATARAIKAVDPE----LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIE--DSRRL 256 (486)
T ss_dssp HHHHHHHHHHH-TT----SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB----HHHH
T ss_pred HHHHHHHHHHhCCC----CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhh--hHHHH
Confidence 99999999999875 589999532 2347888876532 112489999999975422110 01111111 12333
Q ss_pred HHHHHHHHHHHH-HhCCCCcEEEcccccccCCCCCCcchH-HHHHHHHHHHhhhhhccCCeEE--------E-----eee
Q 009102 293 SETFGNLKQTIE-KHGPWASAWVGESGGAYNSGGRHVSNT-FVNSFWYLDQLGMSSKYNTKVY--------C-----RQT 357 (543)
Q Consensus 293 ~~~~~~~~~~~~-~~~~~~~~wl~Et~sa~~~G~~~vsdt-f~~alw~lD~Lg~aA~~g~~vv--------~-----~qt 357 (543)
..+++.++++++ +..|..|+.++|+|+... ....+-|+ |.+|+ .+..+.-.....++.+ | ...
T Consensus 257 ~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~-~~~~~~dt~~~aA~-i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~ 334 (486)
T PF01229_consen 257 FPELKETRPIINDEADPNLPLYITEWNASIS-PRNPQHDTCFKAAY-IAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRK 334 (486)
T ss_dssp HHHHHHHHHHHHTSSSTT--EEEEEEES-SS-TT-GGGGSHHHHHH-HHH-HHHHGGGT-SEEEES-SBS---TTSS-SS
T ss_pred HHHHHHHHHHHhhccCCCCceeecccccccC-CCcchhccccchhh-HHHHHHHhhhhhhhhhhccchhhhhhccCCCCC
Confidence 445556655555 456789999999987663 23344555 44443 2332111110011111 1 111
Q ss_pred ccCcccccccCCCCCcCcchhHHHHHHHhcCCceeEeecCCCCeeEEEEEEecCCCCEEEEEEeCC
Q 009102 358 LVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGITLLLINLS 423 (543)
Q Consensus 358 l~Gg~Y~l~~~~~~~p~P~Yy~~lL~~~l~G~~vl~~~~~~~~~l~~YA~c~~~~g~vtv~lIN~~ 423 (543)
.+-|.+||+... -.+.|.||+..|.+++ |..++... ...+. ..++++.++|++-|..
T Consensus 335 pf~ggfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~~~~---~~~~v----t~~~~~~~~il~~n~~ 391 (486)
T PF01229_consen 335 PFHGGFGLLTKL-GIPKPAYYAFQLLNKL-GDRLVAKG---DHYIV----TSKDDGSVQILVWNHN 391 (486)
T ss_dssp SSSS-S-SEECC-CEE-HHHHHHHHHTT---SEEEEEE---TTEEE----EE-TTS-EEEEEEE--
T ss_pred ceecchhhhhcc-CCCchHHHHHHHHHhh-CceeEecC---CCcee----EEcCCCeEEEEEecCc
Confidence 223556888776 4689999999999988 66554322 22221 3344678999998953
No 4
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.68 E-value=1.3e-07 Score=93.96 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=85.8
Q ss_pred CcccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCC-------CHHHHHHHHhhhC-
Q 009102 186 GYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFF-------DQEWYAKFLQVSG- 257 (543)
Q Consensus 186 g~~i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~-------~~~w~~~fl~~~~- 257 (543)
....+++..-||||... +..++++++++.++++.+.++. .+.+|++|.... ...|+++|++...
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~------~~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~ 134 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRS------PGVKLGSPAVAFTNGGTPGGLDWLSQFLSACAR 134 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhc------CCcEEECCeecccCCCCCCccHHHHHHHHhccc
Confidence 55678999999999863 5679999999999998887773 257999998732 2479999998875
Q ss_pred CCcccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccccCCCCC---CcchHHHH
Q 009102 258 SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGR---HVSNTFVN 334 (543)
Q Consensus 258 ~~~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~G~~---~vsdtf~~ 334 (543)
.-.+|++++|.|. + +. +.+... +.++.++++ +||||+|.+-....+.. .+.+-+..
T Consensus 135 ~~~~D~iavH~Y~---~-~~------------~~~~~~---i~~~~~~~~--kPIWITEf~~~~~~~~~~~~~~~~fl~~ 193 (239)
T PF11790_consen 135 GCRVDFIAVHWYG---G-DA------------DDFKDY---IDDLHNRYG--KPIWITEFGCWNGGSQGSDEQQASFLRQ 193 (239)
T ss_pred CCCccEEEEecCC---c-CH------------HHHHHH---HHHHHHHhC--CCEEEEeecccCCCCCCCHHHHHHHHHH
Confidence 3469999999992 1 11 112222 333333443 99999999753311111 22222345
Q ss_pred HHHHHHHhh
Q 009102 335 SFWYLDQLG 343 (543)
Q Consensus 335 alw~lD~Lg 343 (543)
++-+||...
T Consensus 194 ~~~~ld~~~ 202 (239)
T PF11790_consen 194 ALPWLDSQP 202 (239)
T ss_pred HHHHHhcCC
Confidence 666676653
No 5
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=98.43 E-value=2.7e-05 Score=84.96 Aligned_cols=237 Identities=19% Similarity=0.191 Sum_probs=128.4
Q ss_pred HHHHHHHHH---HhCCcccceeeeeccCCCC----CC-CCCCCCHHHHHHHHHH-HHHHHHHhhcCCCCCCeEEccCCC-
Q 009102 174 NARDFLKYT---ISMGYQIDSWEYGNELSGR----TS-IGASVDAELYGKDLIN-LKNIINELYKNSSSKPTILAPGGF- 243 (543)
Q Consensus 174 ~A~~~l~y~---~~~g~~i~~wElGNEpd~~----~~-~g~~~t~~~Ya~d~~~-~~~~~~~~~~~~~~~~~lvgP~~~- 243 (543)
=|.-+++|. +++|.+|.+.-+.|||+.. .. -...|++++-++=.+. |.-.|++.-.. .+.+|++-+-.
T Consensus 206 yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~ 283 (496)
T PF02055_consen 206 YADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNR 283 (496)
T ss_dssp HHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEG
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCC
Confidence 366677775 4679999999999999952 11 2457898876433332 67777764221 24677765432
Q ss_pred -CCHHHHHHHHhhh-CCCcccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEccccccc
Q 009102 244 -FDQEWYAKFLQVS-GSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAY 321 (543)
Q Consensus 244 -~~~~w~~~fl~~~-~~~~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~ 321 (543)
..+.|...+|+.. ..+.||.+.+|.|-. ++. +..| .+ +.+.-|++.+|.+|.....
T Consensus 284 ~~~~~~~~~il~d~~A~~yv~GiA~HwY~g----~~~-------~~~l----------~~-~h~~~P~k~l~~TE~~~g~ 341 (496)
T PF02055_consen 284 DNLPDYADTILNDPEAAKYVDGIAFHWYGG----DPS-------PQAL----------DQ-VHNKFPDKFLLFTEACCGS 341 (496)
T ss_dssp GGTTHHHHHHHTSHHHHTTEEEEEEEETTC----S-H-------CHHH----------HH-HHHHSTTSEEEEEEEESS-
T ss_pred cccchhhhhhhcChhhHhheeEEEEECCCC----Cch-------hhHH----------HH-HHHHCCCcEEEeeccccCC
Confidence 2357888888632 223699999999952 110 1111 11 1234589999999974322
Q ss_pred CCCCCCc-chHHHHHHHHHHHhhhhhccCCeEEEeeec----cCc-cc--------ccccC--CCCCcCcchhHHHHHHH
Q 009102 322 NSGGRHV-SNTFVNSFWYLDQLGMSSKYNTKVYCRQTL----VGG-NY--------GLLNA--TTFIPNPDYYSALLWHR 385 (543)
Q Consensus 322 ~~G~~~v-sdtf~~alw~lD~Lg~aA~~g~~vv~~qtl----~Gg-~Y--------~l~~~--~~~~p~P~Yy~~lL~~~ 385 (543)
......+ ...+..+..+..-+-..-.++...++.-.+ .|| ++ ..++. +.+..+|.||.+-=|+|
T Consensus 342 ~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 342 WNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHT
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhc
Confidence 1111111 112334444433322222334443322221 122 11 11222 34667999999999999
Q ss_pred hc--CCceeEeecCCC-CeeEEEEEEecCCCCEEEEEEeCCCCCceEEEEEecc
Q 009102 386 LM--GKGVLSVATDGS-SSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSM 436 (543)
Q Consensus 386 l~--G~~vl~~~~~~~-~~l~~YA~c~~~~g~vtv~lIN~~~~~~~~v~v~~~~ 436 (543)
++ |...+.++.+.. ..|.+-|.-.. +|.++|+++|....+ ..++|++++
T Consensus 422 FV~PGa~RI~st~~~~~~~l~~vAF~nP-DGs~vvVv~N~~~~~-~~~~v~v~~ 473 (496)
T PF02055_consen 422 FVRPGAVRIGSTSSSSDSGLEAVAFLNP-DGSIVVVVLNRGDSD-QNFSVTVKD 473 (496)
T ss_dssp TS-TT-EEEEEEESSSTTTEEEEEEEET-TSEEEEEEEE-SSS--EEEEEEEEC
T ss_pred ccCCCCEEEEeeccCCCCceeEEEEECC-CCCEEEEEEcCCCCc-cceEEEEec
Confidence 99 666666665432 36887776555 689999999988766 555666654
No 6
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=98.37 E-value=7.9e-06 Score=78.22 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=72.8
Q ss_pred CCCcchHHHHHHHHHHHhhhhhccCCeEEEe-eeccCcccccccC--CCCCcCcchhHHHHHHHhcCCceeEeecCCC--
Q 009102 325 GRHVSNTFVNSFWYLDQLGMSSKYNTKVYCR-QTLVGGNYGLLNA--TTFIPNPDYYSALLWHRLMGKGVLSVATDGS-- 399 (543)
Q Consensus 325 ~~~vsdtf~~alw~lD~Lg~aA~~g~~vv~~-qtl~Gg~Y~l~~~--~~~~p~P~Yy~~lL~~~l~G~~vl~~~~~~~-- 399 (543)
...+.|+.+.|.++.-++..+-+. ++.+. |.+-.-+-.++.. +....+|.||++.||++++|..++++.+..+
T Consensus 17 ~~tl~dAL~~A~~l~~~~Rn~D~V--~ma~~A~lvn~~~p~~i~~~~~~~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~ 94 (189)
T smart00813 17 QYTLRDALAEAAFLNGLERNSDRV--KMASYAQLVNVINPDMLTFNGGQAWRTTTYYVFQLFSKHQGGTVLPVTISSPTY 94 (189)
T ss_pred cCcHHHHHHHHHHHHHHHhccCcE--EeehhhhhhccccceEEEeCCCCEEECCcCHHHHHhhhhCCceEEEEEeeCCcc
Confidence 456778877776655444443332 22211 2110001112222 2255789999999999999999999887532
Q ss_pred -------CeeEEEEEEecCCCCEEEEEEeCCCCCceEEEEEeccc
Q 009102 400 -------SSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMN 437 (543)
Q Consensus 400 -------~~l~~YA~c~~~~g~vtv~lIN~~~~~~~~v~v~~~~~ 437 (543)
+.|.+.|.+..+.+.++|.+||.+.++++.++|+++|.
T Consensus 95 ~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~~~~~~~~l~l~g~ 139 (189)
T smart00813 95 DGEDSDVPALDASASKDEDGGSLTVKVVNRSPEEAVTVTISLRGL 139 (189)
T ss_pred ccCcccCCcEEEEEEEeCCCCEEEEEEEeCCCCcCEEEEEEecCC
Confidence 56777787765445799999999988778899888774
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.28 E-value=2.8e-05 Score=78.19 Aligned_cols=218 Identities=16% Similarity=0.102 Sum_probs=110.5
Q ss_pred CcHHHHHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee
Q 009102 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (543)
Q Consensus 74 ~~~~l~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN 153 (543)
........++++|--.||+-=. |..-.. +. | +... ..=...+++++++.|++.|..+|+.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~--~~-~-----~~~~----~~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQE--PN-P-----GYNY----DETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTST--TS-T-----TTSB----THHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcC--CC-C-----Cccc----cHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4666778889999999997322 211100 10 0 1100 011235679999999999999999987
Q ss_pred cCCCCccccCCCCCCCCChHHHHHH----HHH-HHh--CCcccceeeeeccCCCCCCCCC---CCCHHHHHHHHHHHHHH
Q 009102 154 ALHGRHNIRHNAWGGAWDSNNARDF----LKY-TIS--MGYQIDSWEYGNELSGRTSIGA---SVDAELYGKDLINLKNI 223 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~W~~~~A~~~----l~y-~~~--~g~~i~~wElGNEpd~~~~~g~---~~t~~~Ya~d~~~~~~~ 223 (543)
...+= ...+ ..........++ ++. +.. ....+.+|||.|||+.. ..+. ..++.+|.+-+.+..++
T Consensus 84 ~~~~w-~~~~---~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-~~~~~w~~~~~~~~~~~~~~~~~~ 158 (281)
T PF00150_consen 84 NAPGW-ANGG---DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG-NDDANWNAQNPADWQDWYQRAIDA 158 (281)
T ss_dssp ESTTC-SSST---STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST-TSTTTTSHHHTHHHHHHHHHHHHH
T ss_pred cCccc-cccc---cccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc-CCccccccccchhhhhHHHHHHHH
Confidence 64110 0000 011122222222 222 222 23347799999999986 2221 22557788878888899
Q ss_pred HHHhhcCCCCCCeEEccCCCCCHHHHHHHHhh--hCCCcccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHH
Q 009102 224 INELYKNSSSKPTILAPGGFFDQEWYAKFLQV--SGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQ 301 (543)
Q Consensus 224 ~~~~~~~~~~~~~lvgP~~~~~~~w~~~fl~~--~~~~~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~ 301 (543)
|+++.|+ .+.+++.... .......+.+. ... ..+++++|.|.... .......-.....+.....++.+..
T Consensus 159 Ir~~~~~---~~i~~~~~~~-~~~~~~~~~~~P~~~~-~~~~~~~H~Y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
T PF00150_consen 159 IRAADPN---HLIIVGGGGW-GADPDGAAADNPNDAD-NNDVYSFHFYDPYD---FSDQWNPGNWGDASALESSFRAALN 230 (281)
T ss_dssp HHHTTSS---SEEEEEEHHH-HTBHHHHHHHSTTTTT-TSEEEEEEEETTTC---HHTTTSTCSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCc---ceeecCCCcc-ccccchhhhcCccccc-CceeEEeeEeCCCC---cCCccccccchhhhHHHHHHHHHHH
Confidence 9988765 2344443211 00111111111 112 36899999998321 1000000011111122233333333
Q ss_pred HHHHhCCCCcEEEcccccccCCC
Q 009102 302 TIEKHGPWASAWVGESGGAYNSG 324 (543)
Q Consensus 302 ~~~~~~~~~~~wl~Et~sa~~~G 324 (543)
.+.+ .++|+|+||+|.....+
T Consensus 231 ~~~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 231 WAKK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHHH--TTSEEEEEEEESSTTTS
T ss_pred HHHH--cCCeEEEeCcCCcCCCC
Confidence 3333 36899999999865333
No 8
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=98.15 E-value=2.4e-05 Score=73.98 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=65.9
Q ss_pred CCCcchHHHHHHHHHHHhhhhhccCCeEEEeeeccC--cc----cccc--cCCCCCcCcchhHHHHHHHhcCCceeEeec
Q 009102 325 GRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVG--GN----YGLL--NATTFIPNPDYYSALLWHRLMGKGVLSVAT 396 (543)
Q Consensus 325 ~~~vsdtf~~alw~lD~Lg~aA~~g~~vv~~qtl~G--g~----Y~l~--~~~~~~p~P~Yy~~lL~~~l~G~~vl~~~~ 396 (543)
...+.++.+.|-+..-.+..+-.. ++.+.-.++. +. ..|+ +.+....+|.||+..||+++.|..+|
T Consensus 17 ~~~l~~AL~~A~~l~~~eRnsD~V--~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~lf~~~~g~~~l---- 90 (177)
T PF06964_consen 17 RYTLRDALAEAAFLNGFERNSDVV--KMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKLFSNHRGDTVL---- 90 (177)
T ss_dssp --BHHHHHHHHHHHHHHHHTTTTE--EEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHHHHHCTTSEEE----
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEE--eEEccchhhccccccccccceEEcCCCCEEECchHHHHHHHHhcCCCeEe----
Confidence 345666666665554444443322 2333322222 10 0232 33345689999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCCEEEEEEeCCCCCceEEEEEeccc
Q 009102 397 DGSSSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMN 437 (543)
Q Consensus 397 ~~~~~l~~YA~c~~~~g~vtv~lIN~~~~~~~~v~v~~~~~ 437 (543)
+.+.+.|.++.+.+.+.|.+||.+.+ ++.++|+++|.
T Consensus 91 ---~~l~~~As~d~~~~~l~v~vVN~~~~-~~~v~l~l~g~ 127 (177)
T PF06964_consen 91 ---PPLDVSASRDEDGGELYVKVVNRSSE-PQTVTLNLQGF 127 (177)
T ss_dssp ---ESEEEEEEEETTTTEEEEEEEE-SSS-BEEEEEEETTS
T ss_pred ---ccEEEEEEEECCCCEEEEEEEECCCC-CEEEEEEEcCC
Confidence 56778888776555799999999888 58899988874
No 9
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.13 E-value=8.3e-06 Score=79.59 Aligned_cols=95 Identities=13% Similarity=0.214 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHh------CCcccceeeeeccCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccC
Q 009102 173 NNARDFLKYTIS------MGYQIDSWEYGNELSGRT-----SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPG 241 (543)
Q Consensus 173 ~~A~~~l~y~~~------~g~~i~~wElGNEpd~~~-----~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~ 241 (543)
.=..+||+|.+. .+..|++|.|.|||+++. -.|...+.+++.+...+++++||+++|+ .+++||.
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~----a~v~GP~ 179 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPD----AKVFGPV 179 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TT----SEEEEEE
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCC----CeEeech
Confidence 346778888643 256799999999999872 2377899999999999999999999986 5999986
Q ss_pred CC---------CC------------HHHHHHHHh-------hhCCCcccEEEEEeecC
Q 009102 242 GF---------FD------------QEWYAKFLQ-------VSGSNVVNGVTHHIYNL 271 (543)
Q Consensus 242 ~~---------~~------------~~w~~~fl~-------~~~~~~id~vs~H~Y~~ 271 (543)
.. .+ ..|+.-||+ +.|...+|++.+|+|+.
T Consensus 180 ~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 180 EWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp E-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 32 11 125555655 23656899999999985
No 10
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.85 E-value=0.00024 Score=73.47 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=109.3
Q ss_pred CCCCcHHHHHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEE
Q 009102 71 LDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSF 150 (543)
Q Consensus 71 ~~l~~~~l~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~ 150 (543)
.+.....+..++|.-|--.||+ + +|.+.. + .+..+.++-.++.+=+++.|.++++
T Consensus 22 ~~G~~~d~~~ilk~~G~N~vRl------R-vwv~P~------------~------~g~~~~~~~~~~akrak~~Gm~vll 76 (332)
T PF07745_consen 22 ENGQEKDLFQILKDHGVNAVRL------R-VWVNPY------------D------GGYNDLEDVIALAKRAKAAGMKVLL 76 (332)
T ss_dssp TTSSB--HHHHHHHTT--EEEE------E-E-SS-T------------T------TTTTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCCCCHHHHHHhcCCCeEEE------E-eccCCc------------c------cccCCHHHHHHHHHHHHHCCCeEEE
Confidence 3445677889999999877775 2 243211 0 1233445556777778889999998
Q ss_pred EeecCC-----CCccccCCCCCCCCCh----HHHHHHHHHH-------HhCCcccceeeeeccCCCC--CCCCCCCCHHH
Q 009102 151 GLNALH-----GRHNIRHNAWGGAWDS----NNARDFLKYT-------ISMGYQIDSWEYGNELSGR--TSIGASVDAEL 212 (543)
Q Consensus 151 glN~~~-----~~~~~~~~~~~~~W~~----~~A~~~l~y~-------~~~g~~i~~wElGNEpd~~--~~~g~~~t~~~ 212 (543)
.+-+.. +.+.++ .+|.. +.+.++-+|+ ++.|.....+|||||.+.. +..|..-+.++
T Consensus 77 dfHYSD~WaDPg~Q~~P-----~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~ 151 (332)
T PF07745_consen 77 DFHYSDFWADPGKQNKP-----AAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDN 151 (332)
T ss_dssp EE-SSSS--BTTB-B-------TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHH
T ss_pred eecccCCCCCCCCCCCC-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHH
Confidence 887532 221222 35543 2344444554 4578889999999998753 34455566777
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEE----ccCCCCCHHHHHHHHhhhCCCcccEEEEEeecCCCCCCchhhhcccChhH
Q 009102 213 YGKDLINLKNIINELYKNSSSKPTIL----APGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQR 288 (543)
Q Consensus 213 Ya~d~~~~~~~~~~~~~~~~~~~~lv----gP~~~~~~~w~~~fl~~~~~~~id~vs~H~Y~~~~g~d~~~~~~~l~~~~ 288 (543)
+++-+..=.+++|++.|+ ++++ .|+......|+-+.|.+.+.+ .|++..++|+.-.+ .
T Consensus 152 ~a~ll~ag~~AVr~~~p~----~kV~lH~~~~~~~~~~~~~f~~l~~~g~d-~DviGlSyYP~w~~-------------~ 213 (332)
T PF07745_consen 152 LAKLLNAGIKAVREVDPN----IKVMLHLANGGDNDLYRWFFDNLKAAGVD-FDVIGLSYYPFWHG-------------T 213 (332)
T ss_dssp HHHHHHHHHHHHHTHSST----SEEEEEES-TTSHHHHHHHHHHHHHTTGG--SEEEEEE-STTST--------------
T ss_pred HHHHHHHHHHHHHhcCCC----CcEEEEECCCCchHHHHHHHHHHHhcCCC-cceEEEecCCCCcc-------------h
Confidence 887777777888887665 3443 232211124444445455654 89999999986422 1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCcEEEcccccccC
Q 009102 289 LSRVSETFGNLKQTIEKHGPWASAWVGESGGAYN 322 (543)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~ 322 (543)
++.+. ..++.+.+++ +||++|.||+-.+.
T Consensus 214 l~~l~---~~l~~l~~ry--~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 214 LEDLK---NNLNDLASRY--GKPVMVVETGYPWT 242 (332)
T ss_dssp HHHHH---HHHHHHHHHH--T-EEEEEEE---SB
T ss_pred HHHHH---HHHHHHHHHh--CCeeEEEecccccc
Confidence 22222 3445555677 59999999986554
No 11
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.0016 Score=66.34 Aligned_cols=213 Identities=13% Similarity=0.105 Sum_probs=117.5
Q ss_pred HHHHHHHHhCCcccceeeeeccCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCCC-HHHHHHHH
Q 009102 176 RDFLKYTISMGYQIDSWEYGNELSGRT-SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFD-QEWYAKFL 253 (543)
Q Consensus 176 ~~~l~y~~~~g~~i~~wElGNEpd~~~-~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~~-~~w~~~fl 253 (543)
.+++.|.+..|.++++.-+=||||.-+ .-++.|+++|-.+=++++..-+.+ +.+++-|+.+.+ +.|-+..|
T Consensus 156 ~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~-------~~rV~~pes~~~~~~~~dp~l 228 (433)
T COG5520 156 NDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINA-------EMRVIIPESFKDLPNMSDPIL 228 (433)
T ss_pred HHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhcc-------ccEEecchhcccccccccccc
Confidence 345556678999999999999999753 235679998876555554443322 468899987643 34555445
Q ss_pred hh--hCCCcccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchH
Q 009102 254 QV--SGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNT 331 (543)
Q Consensus 254 ~~--~~~~~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~G~~~vsdt 331 (543)
+. +.. .||.+.+|.|-.. ++ ++ |.+ + .+....+|.+|++|.-.-. ..++-.|.
T Consensus 229 nDp~a~a-~~~ilg~H~Ygg~--v~-----~~--p~~----------l---ak~~~~gKdlwmte~y~~e--sd~~s~dr 283 (433)
T COG5520 229 NDPKALA-NMDILGTHLYGGQ--VS-----DQ--PYP----------L---AKQKPAGKDLWMTECYPPE--SDPNSADR 283 (433)
T ss_pred cCHhHhc-ccceeEeeecccc--cc-----cc--hhh----------H---hhCCCcCCceEEeecccCC--CCCCcchH
Confidence 31 222 4999999999421 11 00 111 1 1222348999999973211 11122233
Q ss_pred HHHHHHHHHHhhhhhccC-CeEEEeeeccCcccccccCCCCCcCcchhHHHHHHHhcCCc--eeEeecCCCCeeEEEEEE
Q 009102 332 FVNSFWYLDQLGMSSKYN-TKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKG--VLSVATDGSSSLRSYAHC 408 (543)
Q Consensus 332 f~~alw~lD~Lg~aA~~g-~~vv~~qtl~Gg~Y~l~~~~~~~p~P~Yy~~lL~~~l~G~~--vl~~~~~~~~~l~~YA~c 408 (543)
.++|...++..+...| .+.+.--.+ -.+|+......- -.-+=|-+--++.++++. +++.+. +++--+|+..
T Consensus 284 --~~~~~~~hi~~gm~~gg~~ayv~W~i-~~~~~~~~~~gg-~~k~~y~ma~fskf~q~gy~rldat~--sp~~nvyvsa 357 (433)
T COG5520 284 --EALHVALHIHIGMTEGGFQAYVWWNI-RLDYGGGPNHGG-NSKRGYCMAHFSKFVQNGYVRLDATK--SPYGNVYVSA 357 (433)
T ss_pred --HHHHHHHHHHhhccccCccEEEEEEE-eeccCCCcCCCc-ccccceeEeeeeeeccCCceEEeccc--CccceEEEEE
Confidence 5667777766655554 333322111 133433322100 011224444556667766 444443 4433344322
Q ss_pred ecCCCCEEEEEEeCCCCC
Q 009102 409 SKEREGITLLLINLSNQT 426 (543)
Q Consensus 409 ~~~~g~vtv~lIN~~~~~ 426 (543)
-.+++.|.++.||.....
T Consensus 358 yvg~nkvvivaink~~~~ 375 (433)
T COG5520 358 YVGPNKVVIVAINKGTYP 375 (433)
T ss_pred EecCCcEEEEeecccccc
Confidence 224678999999997665
No 12
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.60 E-value=0.00012 Score=61.05 Aligned_cols=75 Identities=21% Similarity=0.160 Sum_probs=41.3
Q ss_pred cccceeeeeccCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCCCHHHHHHHHhhhCCCcc
Q 009102 187 YQIDSWEYGNELSGRTS-----IGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVV 261 (543)
Q Consensus 187 ~~i~~wElGNEpd~~~~-----~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~~~~w~~~fl~~~~~~~i 261 (543)
.+|.+|||+||+++... .......+.|.+-+++..++||+++|+. |..+|-... +... ++......+
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~---pvt~g~~~~-~~~~----~~~~~~~~~ 80 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQ---PVTSGFWGG-DWED----LEQLQAENL 80 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS----EE--B--S--TTH----HHHS--TT-
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCC---cEEeecccC-CHHH----HHHhchhcC
Confidence 35889999999444312 1123456788888899999999998863 444443222 1112 333331249
Q ss_pred cEEEEEee
Q 009102 262 NGVTHHIY 269 (543)
Q Consensus 262 d~vs~H~Y 269 (543)
|++|+|.|
T Consensus 81 DvisfH~Y 88 (88)
T PF12876_consen 81 DVISFHPY 88 (88)
T ss_dssp SSEEB-EE
T ss_pred CEEeeecC
Confidence 99999998
No 13
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.30 E-value=0.013 Score=61.26 Aligned_cols=166 Identities=14% Similarity=0.042 Sum_probs=79.6
Q ss_pred HHHHHhhcCCEEEEEeecCCCCccccCCCC----------CCCCChHHHHHHHHHH---HhCCcccceeeeeccCCCCC-
Q 009102 137 LNQLFNRTRAIVSFGLNALHGRHNIRHNAW----------GGAWDSNNARDFLKYT---ISMGYQIDSWEYGNELSGRT- 202 (543)
Q Consensus 137 ~~~f~~~~G~~~i~glN~~~~~~~~~~~~~----------~~~W~~~~A~~~l~y~---~~~g~~i~~wElGNEpd~~~- 202 (543)
|++-+++-|++.+..+.-...-.-+.+|.. ...|--.-|.-|++++ ++.|.++.+.+.=|||+..|
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~ 188 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWA 188 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCC
Confidence 778899999988776632110000011111 0111112244444443 56799999999999999764
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCC-----CC--------HHHHHHHHhhhCC-------C
Q 009102 203 ---SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGF-----FD--------QEWYAKFLQVSGS-------N 259 (543)
Q Consensus 203 ---~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~-----~~--------~~w~~~fl~~~~~-------~ 259 (543)
+-|+.++.++-++=.+.|++.|++.-. ..+|+.++.. +. ..-+..|++.... .
T Consensus 189 ~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL----~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~ 264 (384)
T PF14587_consen 189 GGSQEGCHFTNEEQADVIRALDKALKKRGL----STKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPN 264 (384)
T ss_dssp --SS-B----HHHHHHHHHHHHHHHHHHT-----S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TT
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHhcCC----CceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhcccc
Confidence 347788998888878888888887522 2356655432 01 1335677764422 2
Q ss_pred cccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccc
Q 009102 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGA 320 (543)
Q Consensus 260 ~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa 320 (543)
+-..++-|.|.... + .+.+...-+.+.+.++++.|+.++|.+|+..-
T Consensus 265 v~~~i~~HsYwt~~---~-----------~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il 311 (384)
T PF14587_consen 265 VPNIISGHSYWTDS---P-----------WDDLRDIRKQLADKLDKYSPGLKYWQTEYCIL 311 (384)
T ss_dssp EEEEEEE--TT-SS---S-----------HHHHHHHHHHHHHHHHTTSS--EEEE----S-
T ss_pred chhheeecccccCC---C-----------HHHHHHHHHHHHHHHHhhCcCCceeeeeeeec
Confidence 45679999997641 1 12334444567777788889999999998543
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=96.72 E-value=0.35 Score=48.41 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=41.3
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCCh-----HHHHHHHHHHH----hCCcccceeeeeccC
Q 009102 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS-----NNARDFLKYTI----SMGYQIDSWEYGNEL 198 (543)
Q Consensus 128 ~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~-----~~A~~~l~y~~----~~g~~i~~wElGNEp 198 (543)
.+..+..|.+.+||++.|.++-... +.-.. +. ..|.. +....+.+|.. ..+..|..|++.|||
T Consensus 12 ~~n~~~~D~~~~~a~~~gi~v~gH~-l~W~~-~~------P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~ 83 (254)
T smart00633 12 QFNFSGADAIVNFAKENGIKVRGHT-LVWHS-QT------PDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEA 83 (254)
T ss_pred ccChHHHHHHHHHHHHCCCEEEEEE-Eeecc-cC------CHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeec
Confidence 4455677999999999999985432 21111 11 23432 22444555642 345669999999999
Q ss_pred CCC
Q 009102 199 SGR 201 (543)
Q Consensus 199 d~~ 201 (543)
...
T Consensus 84 ~~~ 86 (254)
T smart00633 84 LHD 86 (254)
T ss_pred ccC
Confidence 864
No 15
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.39 Score=48.39 Aligned_cols=212 Identities=14% Similarity=0.092 Sum_probs=112.5
Q ss_pred CCcHHHHHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEe
Q 009102 73 LSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGL 152 (543)
Q Consensus 73 l~~~~l~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~gl 152 (543)
-.+++..+.+|+-|.-+||+ -+|.+... ..++-+|- |.-.-..--++..=++..|.+++..+
T Consensus 63 g~~qD~~~iLK~~GvNyvRl-------RvwndP~d---------sngn~ygg--GnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRL-------RVWNDPYD---------SNGNGYGG--GNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEE-------EEecCCcc---------CCCCccCC--CcchHHHHHHHHHHHHhcCcEEEeec
Confidence 45778888899999988886 24544211 01111111 11111122456666777899999877
Q ss_pred ecCCCCccccCCCCCCCCChHH----HHHHHHHH-------HhCCcccceeeeeccCCCC--CCCCCCCCHHHHHHHHHH
Q 009102 153 NALHGRHNIRHNAWGGAWDSNN----ARDFLKYT-------ISMGYQIDSWEYGNELSGR--TSIGASVDAELYGKDLIN 219 (543)
Q Consensus 153 N~~~~~~~~~~~~~~~~W~~~~----A~~~l~y~-------~~~g~~i~~wElGNEpd~~--~~~g~~~t~~~Ya~d~~~ 219 (543)
-+..-=........-.+|..-+ -+++-+|+ ++.|..+.-.|+|||-++- |..|..-+-+..++-+.+
T Consensus 125 HYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~ 204 (403)
T COG3867 125 HYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNA 204 (403)
T ss_pred cchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHH
Confidence 6531100000000113343211 12233343 4568889899999998864 333443344555555555
Q ss_pred HHHHHHHhhcCCCCCCeEEccCCCCCHHHHHHHHhhhCCCcccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHH
Q 009102 220 LKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNL 299 (543)
Q Consensus 220 ~~~~~~~~~~~~~~~~~lvgP~~~~~~~w~~~fl~~~~~~~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~ 299 (543)
-.+++|++.|++....-+.-|.......|+-+=|.+..-+ .|.+...+|+.-.|. |..+. ..+
T Consensus 205 g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvd-fDVig~SyYpyWhgt-------------l~nL~---~nl 267 (403)
T COG3867 205 GIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVD-FDVIGSSYYPYWHGT-------------LNNLT---TNL 267 (403)
T ss_pred HhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCC-ceEEeeeccccccCc-------------HHHHH---hHH
Confidence 5566666555421111112233333335554444455554 788998899875331 11111 235
Q ss_pred HHHHHHhCCCCcEEEccccccc
Q 009102 300 KQTIEKHGPWASAWVGESGGAY 321 (543)
Q Consensus 300 ~~~~~~~~~~~~~wl~Et~sa~ 321 (543)
..+.++| +|.+.+.|++..|
T Consensus 268 ~dia~rY--~K~VmV~Etay~y 287 (403)
T COG3867 268 NDIASRY--HKDVMVVETAYTY 287 (403)
T ss_pred HHHHHHh--cCeEEEEEeccee
Confidence 5566677 5889999998765
No 16
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.08 Score=55.50 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=101.6
Q ss_pred cceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCCCHHHHHHHHhhhCCCcccEEEEEe
Q 009102 189 IDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHI 268 (543)
Q Consensus 189 i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~~~~w~~~fl~~~~~~~id~vs~H~ 268 (543)
.--+++-|||+.. ..-.+|-+-+...+ ++.+|. ..+-| ++..+....|++ .++ .||+|+.|.
T Consensus 105 kw~f~~~~~pn~~------ad~~eyfk~y~~~a---~~~~p~----i~vg~---~w~~e~l~~~~k-~~d-~idfvt~~a 166 (428)
T COG3664 105 KWPFYSPNEPNLL------ADKQEYFKLYDATA---RQRAPS----IQVGG---SWNTERLHEFLK-KAD-EIDFVTELA 166 (428)
T ss_pred ecceeecCCCCcc------cchHHHHHHHHhhh---hccCcc----eeecc---ccCcHHHhhhhh-ccC-cccceeecc
Confidence 3467888999976 23334433222221 133332 23322 233344555665 344 499999999
Q ss_pred ecCCCCCC---chhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHHHHHHhhhh
Q 009102 269 YNLGPGVD---PNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMS 345 (543)
Q Consensus 269 Y~~~~g~d---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~G~~~vsdtf~~alw~lD~Lg~a 345 (543)
|... +.+ +...+..+.+. .......+.+++.++++.-++|+.+.|+|..+ ++..-+-++|+.|--.+..|.-+
T Consensus 167 ~~~~-av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt-~~~~~~n~sy~raa~i~~~Lr~~ 242 (428)
T COG3664 167 NSVD-AVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLT-GPREPTNGSYVRAAYIMRLLREA 242 (428)
T ss_pred cccc-cccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccC-CCccccCceeehHHHHHHHHHhc
Confidence 9643 221 11112222322 34556678889999988889999999999877 45555667787765555555443
Q ss_pred hcc----------CCe-EEEeeec--cCcccccccCCCCCcCcchhHHHHHHHhcCCceeE
Q 009102 346 SKY----------NTK-VYCRQTL--VGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLS 393 (543)
Q Consensus 346 A~~----------g~~-vv~~qtl--~Gg~Y~l~~~~~~~p~P~Yy~~lL~~~l~G~~vl~ 393 (543)
... ... -.+.++. + +..++++.. ..-+|.|+.++++.++ |..+|.
T Consensus 243 g~~v~a~~yW~~sdl~e~~g~~~~~~~-~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~l~ 300 (428)
T COG3664 243 GSPVDAFGYWTNSDLHEEHGPPEAPFV-GGFELFAPY-GGRRPAWMAALFFNRL-GRTLLS 300 (428)
T ss_pred CChhhhhhhhhcccccccCCCcccccc-cceeeeccc-ccchhHHHHHHHHHHH-HHHhhh
Confidence 322 111 0122211 1 122344433 2458999999999999 877654
No 17
>PRK10150 beta-D-glucuronidase; Provisional
Probab=94.34 E-value=0.65 Score=52.52 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=36.5
Q ss_pred cceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCCCHHHHHHHHhhhCCCcccEEEEEe
Q 009102 189 IDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHI 268 (543)
Q Consensus 189 i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~~~~w~~~fl~~~~~~~id~vs~H~ 268 (543)
|..|.+|||+... .+....-++.+.+++|+.+|+ +|.-.+-...... .. ..... .+|++++|.
T Consensus 409 Ii~Ws~gNE~~~~--------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~~--~~---~~~~~-~~Dv~~~N~ 471 (604)
T PRK10150 409 VVMWSIANEPASR--------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFATP--DT---DTVSD-LVDVLCLNR 471 (604)
T ss_pred EEEEeeccCCCcc--------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCCc--cc---ccccC-cccEEEEcc
Confidence 7799999998642 112223346777888888775 3322221100000 00 11122 589999998
Q ss_pred ecC
Q 009102 269 YNL 271 (543)
Q Consensus 269 Y~~ 271 (543)
|+.
T Consensus 472 Y~~ 474 (604)
T PRK10150 472 YYG 474 (604)
T ss_pred cce
Confidence 874
No 18
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=91.22 E-value=1 Score=46.47 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=90.3
Q ss_pred CcHHHHHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee
Q 009102 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (543)
Q Consensus 74 ~~~~l~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN 153 (543)
+-.++++++|..+-..+|+ |++. ..+++-...+|+++++++.
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~-----------------------------~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDAD-----------------------------PSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS-------------------------------HHHHHHHTTS--EEEEEE-
T ss_pred CHHHHHHHHHhcccccEEe---------ecCc-----------------------------HHHHHHHhcCCceeeeccC
Confidence 5677888999888777775 3321 2333344458999999986
Q ss_pred cCCCCccccCCCCCCCCChHHHHHHHHHHHh---CCcccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 009102 154 ALHGRHNIRHNAWGGAWDSNNARDFLKYTIS---MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKN 230 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~---~g~~i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~~~~ 230 (543)
-..-. .... +...|..|++--.. ..-+|.+..+|||.-.. ........-.+.+++++++.-
T Consensus 56 N~~l~-~la~-------~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~------~~~~~lvpAm~ni~~aL~~~~-- 119 (310)
T PF00332_consen 56 NEDLA-SLAS-------SQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG------TDNAYLVPAMQNIHNALTAAG-- 119 (310)
T ss_dssp GGGHH-HHHH-------HHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC------SGGGGHHHHHHHHHHHHHHTT--
T ss_pred hHHHH-Hhcc-------CHHHHhhhhhhcccccCcccceeeeecccccccC------ccceeeccHHHHHHHHHHhcC--
Confidence 21100 0000 23567777774222 12459999999997754 111145566677788887641
Q ss_pred CCCCCeEEcc------------C-CCCCHHH------HHHHHhhhCCCc-ccEEEEEeecCCCCCCchhhhccc------
Q 009102 231 SSSKPTILAP------------G-GFFDQEW------YAKFLQVSGSNV-VNGVTHHIYNLGPGVDPNLVSKIL------ 284 (543)
Q Consensus 231 ~~~~~~lvgP------------~-~~~~~~w------~~~fl~~~~~~~-id~vs~H~Y~~~~g~d~~~~~~~l------ 284 (543)
...++++.-| + +.+...+ +.+||+..+... ++.+.++.|..++..-+ +-..+.
T Consensus 120 L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~-l~yAlf~~~~~~ 198 (310)
T PF00332_consen 120 LSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNIS-LDYALFQPNSGV 198 (310)
T ss_dssp -TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS--HHHHTT-SSS-S
T ss_pred cCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCCceeccchhhhccCCcccCC-cccccccccccc
Confidence 1124555532 2 1223333 457787776431 12222222222211100 000010
Q ss_pred -Ch--hHhhHHHHHHHHHHHHHHHhC-CCCcEEEcccccccCCC
Q 009102 285 -NP--QRLSRVSETFGNLKQTIEKHG-PWASAWVGESGGAYNSG 324 (543)
Q Consensus 285 -~~--~~l~~~~~~~~~~~~~~~~~~-~~~~~wl~Et~sa~~~G 324 (543)
|+ .|-.-+..+++.+..++.+.+ +++++|+||||-...|+
T Consensus 199 ~D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~ 242 (310)
T PF00332_consen 199 VDGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD 242 (310)
T ss_dssp EETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC
Confidence 11 111122345566666666543 57899999999766444
No 19
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=86.59 E-value=6.8 Score=39.96 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCccccC----CCCCCCCC---hHHHHHHHHHHHhCCc-ccceeeeeccCCCCCCCC
Q 009102 135 DELNQLFNRTRAIVSFGLNAL-HGRHNIRH----NAWGGAWD---SNNARDFLKYTISMGY-QIDSWEYGNELSGRTSIG 205 (543)
Q Consensus 135 d~~~~f~~~~G~~~i~glN~~-~~~~~~~~----~~~~~~W~---~~~A~~~l~y~~~~g~-~i~~wElGNEpd~~~~~g 205 (543)
+.|+++|.+.|.-++--+... .+.....+ ......|. ..+.+++|+.- +++ .|..|.+|||+
T Consensus 62 ~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~NHPSIi~W~~gNE~------- 132 (298)
T PF02836_consen 62 PRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRD--RNHPSIIMWSLGNES------- 132 (298)
T ss_dssp HHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHH--TT-TTEEEEEEEESS-------
T ss_pred HHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcC--cCcCchheeecCccC-------
Confidence 688999999999888777551 11100000 00001111 12233333322 333 36699999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcC
Q 009102 206 ASVDAELYGKDLINLKNIINELYKN 230 (543)
Q Consensus 206 ~~~t~~~Ya~d~~~~~~~~~~~~~~ 230 (543)
.+...+..+.+++++.+|+
T Consensus 133 ------~~~~~~~~l~~~~k~~Dpt 151 (298)
T PF02836_consen 133 ------DYREFLKELYDLVKKLDPT 151 (298)
T ss_dssp ------HHHHHHHHHHHHHHHH-TT
T ss_pred ------ccccchhHHHHHHHhcCCC
Confidence 4455567788888888876
No 20
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=80.14 E-value=31 Score=34.75 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=47.4
Q ss_pred HHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHHHhCCc-ccceeeeeccCCCCCCCCCCCCHHHHH
Q 009102 136 ELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGY-QIDSWEYGNELSGRTSIGASVDAELYG 214 (543)
Q Consensus 136 ~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~-~i~~wElGNEpd~~~~~g~~~t~~~Ya 214 (543)
.+..-+.+.|.+++.|+=... | ...+.. -..+..|-...+. .+...-+|||.=.. ...+++|.+
T Consensus 91 ~v~pAa~~~g~kv~lGiw~td------d----~~~~~~-~til~ay~~~~~~d~v~~v~VGnEal~r----~~~tasql~ 155 (305)
T COG5309 91 NVLPAAEASGFKVFLGIWPTD------D----IHDAVE-KTILSAYLPYNGWDDVTTVTVGNEALNR----NDLTASQLI 155 (305)
T ss_pred hhHHHHHhcCceEEEEEeecc------c----hhhhHH-HHHHHHHhccCCCCceEEEEechhhhhc----CCCCHHHHH
Confidence 344456677899999985421 1 111111 0222333322333 48899999995432 358999999
Q ss_pred HHHHHHHHHHHHh
Q 009102 215 KDLINLKNIINEL 227 (543)
Q Consensus 215 ~d~~~~~~~~~~~ 227 (543)
+.....|.++++.
T Consensus 156 ~~I~~vrsav~~a 168 (305)
T COG5309 156 EYIDDVRSAVKEA 168 (305)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 21
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=69.67 E-value=16 Score=34.19 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCC---CCCChHHHHHHHHHH-Hh--CCcccceeeeeccCCCCCCCC
Q 009102 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWG---GAWDSNNARDFLKYT-IS--MGYQIDSWEYGNELSGRTSIG 205 (543)
Q Consensus 132 ~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~---~~W~~~~A~~~l~y~-~~--~g~~i~~wElGNEpd~~~~~g 205 (543)
+-.+.+++.|++.|.++++||++... .+. .+|.....+.+++.- .. +.-.+++|=|=+|++..
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~~~~~-------~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~---- 133 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLYFDPD-------YWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY---- 133 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCCCCch-------hhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc----
Confidence 34589999999999999999986421 111 122111112222211 11 11258999999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEcc
Q 009102 206 ASVDAELYGKDLINLKNIINELYKNSSSKPTILAP 240 (543)
Q Consensus 206 ~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP 240 (543)
.+.. .+.++.+.+.++++.+ .+|..+.|
T Consensus 134 -~~~~---~~~~~~l~~~lk~~s~---~~Pv~ISp 161 (166)
T PF14488_consen 134 -NWNA---PERFALLGKYLKQISP---GKPVMISP 161 (166)
T ss_pred -ccch---HHHHHHHHHHHHHhCC---CCCeEEec
Confidence 2333 4456677788888755 35777776
No 22
>TIGR03356 BGL beta-galactosidase.
Probab=67.87 E-value=13 Score=40.25 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCC
Q 009102 78 LANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHG 157 (543)
Q Consensus 78 l~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~ 157 (543)
=+.+++.+|-..+|++=.++-.. +.. .. .+ ++ =.-+..+++.+-+++.|.++|++|.=-.-
T Consensus 59 Di~l~~~~G~~~~R~si~Wsri~---p~g-~~--~~---n~----------~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 59 DVALMKELGVDAYRFSIAWPRIF---PEG-TG--PV---NP----------KGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHcCCCeEEcccchhhcc---cCC-CC--Cc---CH----------HHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 35788999999999876544221 110 00 00 00 01245689999999999999999952111
Q ss_pred CccccCCCCCCCCC-hHHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 158 RHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 158 ~~~~~~~~~~~~W~-~~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
..... . .|.|. +.....+++||+ ..+..+++|+.=|||+..
T Consensus 120 P~~l~--~-~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 165 (427)
T TIGR03356 120 PQALE--D-RGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCS 165 (427)
T ss_pred cHHHH--h-cCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCccee
Confidence 00000 0 25564 456788888874 467789999999999964
No 23
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=62.51 E-value=2.2e+02 Score=30.38 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=37.2
Q ss_pred CCcCcchhHHHHHHHhcCCceeEe--ecCCCCeeEEEEEEecCCCCEEEEEEeCCCCC
Q 009102 371 FIPNPDYYSALLWHRLMGKGVLSV--ATDGSSSLRSYAHCSKEREGITLLLINLSNQT 426 (543)
Q Consensus 371 ~~p~P~Yy~~lL~~~l~G~~vl~~--~~~~~~~l~~YA~c~~~~g~vtv~lIN~~~~~ 426 (543)
|.-.|-||+.--|++++-+....| ..+.+..|.+-|.-.. +|.-+|++.|++...
T Consensus 432 fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~aflnp-dGskvvVllnk~s~~ 488 (518)
T KOG2566|consen 432 FYKQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFLNP-DGSKVVVLLNKNSLD 488 (518)
T ss_pred HhhccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEEcC-CCcEEEEEeccCCCC
Confidence 445788999999999985543333 3333445555554443 688899999998866
No 24
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=58.45 E-value=2.3e+02 Score=29.34 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=56.4
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHHH--hCCcccceeeeeccCCCCCCCCCCCCHHH
Q 009102 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI--SMGYQIDSWEYGNELSGRTSIGASVDAEL 212 (543)
Q Consensus 135 d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~--~~g~~i~~wElGNEpd~~~~~g~~~t~~~ 212 (543)
|+.|+.++.+|.=+|+.||.-... +...+....|+...-....+-.. ++-.|+.++=+|||.-.. . .+..+..
T Consensus 82 d~CM~~~~~aGIYvi~Dl~~p~~s--I~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~-~--~~t~aap 156 (314)
T PF03198_consen 82 DECMSAFADAGIYVILDLNTPNGS--INRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVIND-A--SNTNAAP 156 (314)
T ss_dssp HHHHHHHHHTT-EEEEES-BTTBS----TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-S-T--T-GGGHH
T ss_pred HHHHHHHHhCCCEEEEecCCCCcc--ccCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecC-C--CCcccHH
Confidence 899999999999999999976332 32223334676543322222111 223357799999997653 1 1233555
Q ss_pred HHHH-HHHHHHHHHHhhcCCCCCCeEEccCCC---CCHHHHHHHHhhhCC--CcccEEEEEeecCC
Q 009102 213 YGKD-LINLKNIINELYKNSSSKPTILAPGGF---FDQEWYAKFLQVSGS--NVVNGVTHHIYNLG 272 (543)
Q Consensus 213 Ya~d-~~~~~~~~~~~~~~~~~~~~lvgP~~~---~~~~w~~~fl~~~~~--~~id~vs~H~Y~~~ 272 (543)
|.+- .|..++.|++. ..+..-||-+.. ....-+.++|. .+. ..+|.+.+-.|.+-
T Consensus 157 ~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~-Cg~~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 157 YVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLN-CGDDDERIDFFGLNSYEWC 217 (314)
T ss_dssp HHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTT-BTT-----S-EEEEE----
T ss_pred HHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhc-CCCcccccceeeeccceec
Confidence 5443 22233344432 122344554332 12234555663 322 25899999999763
No 25
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=54.53 E-value=1.1e+02 Score=34.79 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=75.4
Q ss_pred HhCCcccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCCeEEccCCCCCHHHHHHHHhh-hCCCc
Q 009102 183 ISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINEL-YKNSSSKPTILAPGGFFDQEWYAKFLQV-SGSNV 260 (543)
Q Consensus 183 ~~~g~~i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~-~~~~~~~~~lvgP~~~~~~~w~~~fl~~-~~~~~ 260 (543)
+.+|..|.|..+-||=. ++ .+|. +.||+.+++. | .+.+||+.+.... .+-..++.. .-.+.
T Consensus 168 ~~~gl~idYvg~~NEr~--------~~-~~~i---k~lr~~l~~~gy----~~vkiva~D~~~~-~~~~~m~~D~~l~~a 230 (669)
T PF02057_consen 168 KTHGLDIDYVGIWNERG--------FD-VNYI---KWLRKALNSNGY----NKVKIVAADNNWE-SISDDMLSDPELRNA 230 (669)
T ss_dssp HHH-----EE-S-TTS------------HHHH---HHHHHHHHHTT-----TT-EEEEEEE-ST-THHHHHHH-HHHHHH
T ss_pred HHhCCCceEechhhccC--------CC-hhHH---HHHHHHHhhccc----cceEEEEeCCCcc-chhhhhhcCHHHHhc
Confidence 45789999998888833 23 3554 4677777764 3 3579999886532 233333221 11114
Q ss_pred ccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHH--H
Q 009102 261 VNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFW--Y 338 (543)
Q Consensus 261 id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~G~~~vsdtf~~alw--~ 338 (543)
||++..| |+. .+.. .. .+.. +||+|-+|-.+.++ +-..++-| .
T Consensus 231 vdvig~H-Y~~---~~~~---------------~~-------a~~~--~K~lW~SE~~s~~~-------~~~g~g~~ar~ 275 (669)
T PF02057_consen 231 VDVIGYH-YPG---TYSS---------------KN-------AKLT--GKPLWSSEDYSTFN-------YNVGAGCWARI 275 (669)
T ss_dssp --EEEEE-S-T---T------------------HH-------HHHH--T-EEEEEEEE-S-T-------THHHHHHHHHH
T ss_pred ccEeccc-cCC---CCcH---------------HH-------HHHh--CCCeEEcCCccccc-------CcCchHHHHHH
Confidence 8999999 442 1110 00 0111 69999999765442 22233333 2
Q ss_pred HHHhhhhhccCCeEEEeeeccCcccc--------cccC-C----CCCcCcchhHHHHHHHhcCC--ceeEeecCCCCeeE
Q 009102 339 LDQLGMSSKYNTKVYCRQTLVGGNYG--------LLNA-T----TFIPNPDYYSALLWHRLMGK--GVLSVATDGSSSLR 403 (543)
Q Consensus 339 lD~Lg~aA~~g~~vv~~qtl~Gg~Y~--------l~~~-~----~~~p~P~Yy~~lL~~~l~G~--~vl~~~~~~~~~l~ 403 (543)
|++--. .-....++-|.++++-|. |+.- + .+...+..|+..=+.+|.-. +-|+..- .-..--
T Consensus 276 ln~~yv--~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v~~~iWv~AHtTQFt~pGW~YL~~~G-~l~~gG 352 (669)
T PF02057_consen 276 LNRNYV--NGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEVDSPIWVTAHTTQFTQPGWRYLDSVG-HLRGGG 352 (669)
T ss_dssp HHHHHH--HH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B--HHHHHHHHHHTT--TT-EEES--E-E-TTS-
T ss_pred HHhhhh--ccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceEecceeeeeeehhccCCCCeEEccCcc-ccCCCc
Confidence 332211 122345677888987773 3211 1 24567788988888888744 3443210 011122
Q ss_pred EEEEEecCCCCEEEEE
Q 009102 404 SYAHCSKEREGITLLL 419 (543)
Q Consensus 404 ~YA~c~~~~g~vtv~l 419 (543)
.|...+.+.|.+++++
T Consensus 353 SYVtLtd~~gn~tiii 368 (669)
T PF02057_consen 353 SYVTLTDGTGNYTIII 368 (669)
T ss_dssp EEEEEE-SSS-EEEEE
T ss_pred ceEEeecCCCCceEEE
Confidence 4444444456666655
No 26
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=50.69 E-value=64 Score=34.04 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecC
Q 009102 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNAL 155 (543)
Q Consensus 79 ~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~ 155 (543)
+.++|++|--.+|+|=- .|..= .| +.+.|.| +..|.+++.+++.|.++|+++...
T Consensus 16 ~~~m~~~G~n~vri~~~-----~W~~l------EP----~eG~ydF-------~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 16 LRLMKEAGFNTVRIGEF-----SWSWL------EP----EEGQYDF-------SWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp HHHHHHHT-SEEEE-CC-----EHHHH-------S----BTTB----------HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred HHHHHHcCCCEEEEEEe-----chhhc------cC----CCCeeec-------HHHHHHHHHHHhccCeEEEEeccc
Confidence 46678889999998642 23210 11 1223333 557999999999999999998643
No 27
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=50.21 E-value=93 Score=32.81 Aligned_cols=109 Identities=15% Similarity=0.066 Sum_probs=41.3
Q ss_pred cccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccccCC-CCC--CcchHHHHHH
Q 009102 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNS-GGR--HVSNTFVNSF 336 (543)
Q Consensus 260 ~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~-G~~--~vsdtf~~al 336 (543)
.+|+++++.|+.+...... . ++..+ .-..++++....++|+|+.|+.+...+ +.. ...+-. -.+
T Consensus 251 ~~D~~~~d~Y~~~~~~~~~--~---~~~~~-------a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~-~~~ 317 (374)
T PF02449_consen 251 YLDVVSWDSYPDGSFDFYD--D---DPYSL-------AFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGE-LRL 317 (374)
T ss_dssp GSSSEEEEE-HHHHHTTTT-------TTHH-------HHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTH-HHH
T ss_pred hCCcceeccccCcccCCCC--C---CHHHH-------HHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCH-HHH
Confidence 4899999999861000000 0 11111 111222333357899999998653211 111 111112 234
Q ss_pred HHHHHhhhhhccCCeEEEeeeccC---cccccccCCCCCcCcchhHHH
Q 009102 337 WYLDQLGMSSKYNTKVYCRQTLVG---GNYGLLNATTFIPNPDYYSAL 381 (543)
Q Consensus 337 w~lD~Lg~aA~~g~~vv~~qtl~G---g~Y~l~~~~~~~p~P~Yy~~l 381 (543)
|..-.+...|+.-.---.||...| ..+|+++.+.-.|++.|.-..
T Consensus 318 ~~~~~~A~Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~ 365 (374)
T PF02449_consen 318 WSWQAIAHGADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVA 365 (374)
T ss_dssp HHHHHHHTT-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHH
T ss_pred HHHHHHHHhCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHH
Confidence 555555443322100013455555 356899888546777776543
No 28
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=46.21 E-value=47 Score=36.52 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 009102 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (543)
Q Consensus 79 ~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~ 158 (543)
+.|++.||--..|++=.++=- -|..... .+ +. =.-+..+.+.+-+.+.|.+++++|.=-.-.
T Consensus 75 I~Lm~elG~~~yRfSIsWsRI---~P~G~~~--~~------N~-------~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 75 IKLFAEMGFKCFRTSIAWTRI---FPKGDEA--QP------NE-------EGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHcCCCEEEecccceee---ccCCCCC--CC------CH-------HHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 578899998888887654311 1110000 00 00 012345888889999999999999521111
Q ss_pred ccccCCCCCCCC-ChHHHHHHHHHH----HhCCcccceeeeeccCCC
Q 009102 159 HNIRHNAWGGAW-DSNNARDFLKYT----ISMGYQIDSWEYGNELSG 200 (543)
Q Consensus 159 ~~~~~~~~~~~W-~~~~A~~~l~y~----~~~g~~i~~wElGNEpd~ 200 (543)
....+ .-|.| ++..+..+++|| +..|..|++|--=|||+.
T Consensus 137 ~~L~~--~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 137 LHLVQ--QYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred HHHHH--hcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 00000 01678 566788899997 467889999999999984
No 29
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=38.91 E-value=63 Score=35.54 Aligned_cols=106 Identities=9% Similarity=0.006 Sum_probs=67.4
Q ss_pred cHHHHHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeec
Q 009102 75 HPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNA 154 (543)
Q Consensus 75 ~~~l~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~ 154 (543)
.++ +.+++.||-...|++=+++ ...|..... .+ + .=.-+..+.+.+-+++.|.++|++|+-
T Consensus 74 ~eD-i~l~~~lG~~~yR~si~Ws---Ri~P~g~~~--~~---n----------~~~~~~Y~~~i~~l~~~gi~p~VtL~H 134 (474)
T PRK09852 74 KED-IALMAEMGFKVFRTSIAWS---RLFPQGDEL--TP---N----------QQGIAFYRSVFEECKKYGIEPLVTLCH 134 (474)
T ss_pred HHH-HHHHHHcCCCeEEeeceee---eeeeCCCCC--CC---C----------HHHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 344 4688999999999876644 122211000 00 0 012245689999999999999999984
Q ss_pred CCCCccccCCCCCCCCCh-HHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 155 LHGRHNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 155 ~~~~~~~~~~~~~~~W~~-~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
-.-..... ..-|.|.. ..+..+++||. ..|..|++|--=|||+..
T Consensus 135 ~~~P~~l~--~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~ 184 (474)
T PRK09852 135 FDVPMHLV--TEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184 (474)
T ss_pred CCCCHHHH--HhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhh
Confidence 32211110 01267865 45677888864 578899999999999954
No 30
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=36.58 E-value=5.5e+02 Score=27.34 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecCCCCcccc
Q 009102 131 MQRWDELNQLFNRTRAIVSFGLNALHGRHNIR 162 (543)
Q Consensus 131 ~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~ 162 (543)
..++.+=.+-|+..|.++++.|--+.|.+...
T Consensus 89 CTqi~~di~~CQS~GiKVlLSLGG~~GnYs~~ 120 (568)
T KOG4701|consen 89 CTQIETDIQVCQSNGIKVLLSLGGYNGNYSLN 120 (568)
T ss_pred cchhhhHHHHHHhcCeEEEEeccCcccceeec
Confidence 34556667889999999999986666654443
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=36.57 E-value=5e+02 Score=26.79 Aligned_cols=222 Identities=12% Similarity=0.050 Sum_probs=99.1
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCC--CCChHH---HHHH-HHHH----HhCC--cccceeeee
Q 009102 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGG--AWDSNN---ARDF-LKYT----ISMG--YQIDSWEYG 195 (543)
Q Consensus 128 ~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~--~W~~~~---A~~~-l~y~----~~~g--~~i~~wElG 195 (543)
.+.-+.-|.+++||++.|.++---. +.-.. ++++ +... .+++.+ .++. -+|. ...+ .+|++|.+=
T Consensus 55 ~~~~~~~D~~~~~a~~~g~~vrGH~-LvW~~-~~P~-w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVv 131 (320)
T PF00331_consen 55 RFNFESADAILDWARENGIKVRGHT-LVWHS-QTPD-WVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVV 131 (320)
T ss_dssp BEE-HHHHHHHHHHHHTT-EEEEEE-EEESS-SS-H-HHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEE
T ss_pred ccCccchhHHHHHHHhcCcceeeee-EEEcc-cccc-eeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEe
Confidence 3444566999999999999765432 21110 1221 1111 234332 2222 2332 2344 579999999
Q ss_pred ccCCCCCC--CCCCCCH------HHHHHHHHHHHHHHHHhhcCCCCCCeEEccC--CCCC------HHHHHHHHhhhCCC
Q 009102 196 NELSGRTS--IGASVDA------ELYGKDLINLKNIINELYKNSSSKPTILAPG--GFFD------QEWYAKFLQVSGSN 259 (543)
Q Consensus 196 NEpd~~~~--~g~~~t~------~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~--~~~~------~~w~~~fl~~~~~~ 259 (543)
|||=...+ .+-.-+. .+|.+++-++ .++++|+ .+++==+ .-.. ..+.+.+. +.|..
T Consensus 132 NE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~---A~~~~P~----a~L~~NDy~~~~~~k~~~~~~lv~~l~-~~gvp 203 (320)
T PF00331_consen 132 NEAIDDDGNPGGLRDSPWYDALGPDYIADAFRA---AREADPN----AKLFYNDYNIESPAKRDAYLNLVKDLK-ARGVP 203 (320)
T ss_dssp ES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHH---HHHHHTT----SEEEEEESSTTSTHHHHHHHHHHHHHH-HTTHC
T ss_pred eecccCCCccccccCChhhhcccHhHHHHHHHH---HHHhCCC----cEEEeccccccchHHHHHHHHHHHHHH-hCCCc
Confidence 99865422 1111111 2344433333 3445554 3444211 0001 12334433 44543
Q ss_pred cccEEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHHHH
Q 009102 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYL 339 (543)
Q Consensus 260 ~id~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~G~~~vsdtf~~alw~l 339 (543)
||++-+...... +. + + +.+... ++++ ..-++|++|+|..-............-..|-++-
T Consensus 204 -IdgIG~Q~H~~~-~~-~--------~---~~i~~~---l~~~---~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~ 263 (320)
T PF00331_consen 204 -IDGIGLQSHFDA-GY-P--------P---EQIWNA---LDRF---ASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYR 263 (320)
T ss_dssp -S-EEEEEEEEET-TS-S--------H---HHHHHH---HHHH---HTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHH
T ss_pred -cceechhhccCC-CC-C--------H---HHHHHH---HHHH---HHcCCceEEEeeeecCCCCCcchHHHHHHHHHHH
Confidence 999888433211 11 1 1 111111 2221 1347999999986543222211112234556777
Q ss_pred HHhhhhhccC---CeEEEeeecc------Cc---cc-ccccCCCCCcCcchhHHH
Q 009102 340 DQLGMSSKYN---TKVYCRQTLV------GG---NY-GLLNATTFIPNPDYYSAL 381 (543)
Q Consensus 340 D~Lg~aA~~g---~~vv~~qtl~------Gg---~Y-~l~~~~~~~p~P~Yy~~l 381 (543)
+.+-++-++. +..+.--.+. +. ++ .|+|.+ +.|.|.||+.+
T Consensus 264 ~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-~~~Kpa~~~~~ 317 (320)
T PF00331_consen 264 DFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDED-YQPKPAYDAIV 317 (320)
T ss_dssp HHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TT-SBB-HHHHHHH
T ss_pred HHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCC-cCCCHHHHHHH
Confidence 7777766665 3333211111 11 12 355555 78999998753
No 32
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=36.51 E-value=61 Score=26.64 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=12.6
Q ss_pred CceEEccceEEEEEe
Q 009102 519 SPIYITHLSIAFIVF 533 (543)
Q Consensus 519 ~~i~lpp~S~~F~vi 533 (543)
..|+|||+|...+.+
T Consensus 79 ~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 79 ITVTLPPYSALVLKL 93 (95)
T ss_dssp EEEEESTTEEEEEEE
T ss_pred EEEEECCCEEEEEEE
Confidence 479999999988775
No 33
>PLN02849 beta-glucosidase
Probab=36.30 E-value=67 Score=35.60 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=47.7
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCC-hHHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 132 ~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~-~~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
+..+++.+-+.+.|.+++++|.=-.-.....+ .-|.|. ...+..+++||+ ..|..|++|--=|||+..
T Consensus 119 ~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~--~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~ 191 (503)
T PLN02849 119 QFYKNFIQELVKHGIEPHVTLFHYDHPQYLED--DYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIF 191 (503)
T ss_pred HHHHHHHHHHHHcCCeEEEeecCCCCcHHHHH--hcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhh
Confidence 34588888899999999999862111000000 016774 456888899974 578999999999999954
No 34
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=36.17 E-value=73 Score=34.96 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=63.4
Q ss_pred HHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 009102 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (543)
Q Consensus 79 ~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~ 158 (543)
+.|++.||-..-|++=+++=- .|.. .. .+ ++ =.-+..+++.+-+.+.|.+++++|.=-.-.
T Consensus 60 i~L~~~lG~~~yRfSIsWsRI---~P~G-~g--~v---N~----------~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 60 LKLAEEFGVNGIRISIAWSRI---FPDG-YG--EV---NP----------KGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHhCCCEEEeeccHhhc---CcCC-CC--Cc---CH----------HHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 478899998888876553311 0100 00 00 00 012456888999999999999999621111
Q ss_pred ccccCCCCCCCCC-hHHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 159 HNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 159 ~~~~~~~~~~~W~-~~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
....+ .|.|. ++.+..+++||+ ..|. |++|--=|||+.+
T Consensus 121 ~~L~~---~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 121 EALHS---NGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred HHHHH---cCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 11111 36775 456788899974 5788 9999999999865
No 35
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=35.18 E-value=74 Score=34.98 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=63.2
Q ss_pred HHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 009102 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (543)
Q Consensus 79 ~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~ 158 (543)
+.|+|.||-...|++=+|+=- .|..... .+ ++ =.-+.-+.+.+-+.+.|.+++++|.=-.-.
T Consensus 73 i~Lm~~lG~~~yRfSIsWsRI---~P~G~~~--~~---N~----------~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 73 IALFAEMGFKCFRTSIAWTRI---FPQGDEL--EP---NE----------EGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHcCCCEEEeccchhhc---CcCCCCC--CC---CH----------HHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 578899998888876553311 0110000 00 00 012345888888999999999999621111
Q ss_pred ccccCCCCCCCCCh-HHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 159 HNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 159 ~~~~~~~~~~~W~~-~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
....+ .-|.|.. +.+..+++||+ ..|..|++|--=|||+..
T Consensus 135 ~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~ 180 (476)
T PRK09589 135 YHLVT--EYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQ 180 (476)
T ss_pred HHHHH--hcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhh
Confidence 00000 0167854 55788899974 578999999999999853
No 36
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=33.58 E-value=2.1e+02 Score=34.71 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCccccCCCCCCCCChHHHHHHHHHHH--hCCcc-cceeeeeccCCCCCCCCCCCCH
Q 009102 135 DELNQLFNRTRAIVSFGLNAL-HGRHNIRHNAWGGAWDSNNARDFLKYTI--SMGYQ-IDSWEYGNELSGRTSIGASVDA 210 (543)
Q Consensus 135 d~~~~f~~~~G~~~i~glN~~-~~~~~~~~~~~~~~W~~~~A~~~l~y~~--~~g~~-i~~wElGNEpd~~~~~g~~~t~ 210 (543)
+.|+++|.+.|.-++=-+|+. .+-.....-.....|.. ...+-++... .+++. |..|.+|||+.. +
T Consensus 397 p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~~~~-~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~----g----- 466 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPRWLP-AMSERVTRMVQRDRNHPSIIIWSLGNESGH----G----- 466 (1027)
T ss_pred HHHHHHHHHcCCEEEEecCccccCCccccCCCCCHHHHH-HHHHHHHHHHHhCCCCCEEEEEeCccCCCc----C-----
Confidence 678999999999888776652 11000000000112321 1222222222 23443 779999999742 1
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 009102 211 ELYGKDLINLKNIINELYKN 230 (543)
Q Consensus 211 ~~Ya~d~~~~~~~~~~~~~~ 230 (543)
..+..+.+++|+.+|+
T Consensus 467 ----~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 467 ----ANHDALYRWIKSNDPS 482 (1027)
T ss_pred ----hhHHHHHHHHHhhCCC
Confidence 1245677888888775
No 37
>PLN02814 beta-glucosidase
Probab=33.34 E-value=79 Score=35.06 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=62.8
Q ss_pred HHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 009102 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (543)
Q Consensus 79 ~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~ 158 (543)
+.|+|.||-..-|++=.++=- -|.. .. .+ ++ =.-+..+++.+-+.+.|.+++++|.=-.-.
T Consensus 83 I~L~k~lG~~ayRfSIsWsRI---~P~G-~g--~~---N~----------~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 83 VKLMAEMGLESFRFSISWSRL---IPNG-RG--LI---NP----------KGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred HHHHHHcCCCEEEEeccHhhc---CcCC-CC--CC---CH----------HHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 578888998888876553311 0110 00 00 00 112455888888999999999998621110
Q ss_pred ccccCCCCCCCCCh-HHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 159 HNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 159 ~~~~~~~~~~~W~~-~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
....+ .-|.|.. +.+..+++||+ ..|..|++|--=|||+..
T Consensus 144 ~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~ 189 (504)
T PLN02814 144 QSLED--EYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIF 189 (504)
T ss_pred HHHHH--hcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchh
Confidence 00000 0166754 56778899974 578999999999999954
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=31.28 E-value=1.1e+02 Score=33.78 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=47.7
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCCh-HHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 132 ~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~-~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
..-+++.+-+.+.|.+++++|.=-.-..... ..-|.|.. +.+..+++||+ ..|..|++|--=|||+..
T Consensus 114 ~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~--~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 114 QFYEDIFKECHKYGIEPLVTITHFDCPMHLI--EEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCCHHHH--hhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 4458888899999999999995211100000 01267754 45778889974 579999999999999964
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.27 E-value=1e+02 Score=33.75 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=62.6
Q ss_pred HHHHHHcCCceEecCCcccceeeEecCCCCCCCCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 009102 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (543)
Q Consensus 79 ~~l~k~L~p~~lRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~ 158 (543)
+.|++.||-...|++=+++=- .|.. ... . ++ =.-...+++.+-+.+.|.++|++|.=-.-.
T Consensus 59 i~L~~~lG~~~yRfSIsWsRI---~P~g-~~~--~---N~----------~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 59 LELAEEYGVNGIRISIAWSRI---FPTG-YGE--V---NE----------KGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHcCCCEEEEecchhhc---cCCC-CCC--c---CH----------HHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 478899998888886554311 1110 000 0 00 012456888888899999999998621111
Q ss_pred ccccCCCCCCCCCh-HHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 159 HNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 159 ~~~~~~~~~~~W~~-~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
....+ .|.|.. +.+..+++||+ ..|. |++|--=|||+..
T Consensus 120 ~~L~~---~GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~ 163 (467)
T TIGR01233 120 EALHS---NGDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPI 163 (467)
T ss_pred HHHHH---cCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhh
Confidence 11111 367754 56778888974 4675 9999999999965
No 40
>PLN02998 beta-glucosidase
Probab=29.51 E-value=91 Score=34.52 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=47.4
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCC-hHHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 132 ~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~-~~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
+..+.+.+-+.+.|.+++++|.=-.-.....+ .-|.|. .+.+..+++||+ ..|..|++|--=|||+.+
T Consensus 122 ~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~--~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 194 (497)
T PLN02998 122 QYYNNLIDELITHGIQPHVTLHHFDLPQALED--EYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVF 194 (497)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--hhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchh
Confidence 34588888889999999999862111100000 016674 456788899974 578999999999999965
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=29.22 E-value=2.2e+02 Score=34.60 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCEEEEEeecCC-CCccccC-CC--CCCCCCh---HHHHHHHHHHHhCCcc-cceeeeeccCCCCCCCCC
Q 009102 135 DELNQLFNRTRAIVSFGLNALH-GRHNIRH-NA--WGGAWDS---NNARDFLKYTISMGYQ-IDSWEYGNELSGRTSIGA 206 (543)
Q Consensus 135 d~~~~f~~~~G~~~i~glN~~~-~~~~~~~-~~--~~~~W~~---~~A~~~l~y~~~~g~~-i~~wElGNEpd~~~~~g~ 206 (543)
..|++.|.+.|.-++=-.|+.. +-....+ .. ....|.. .+++++++- .+++. |..|.+|||...
T Consensus 381 ~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~R--drNHPSIi~WslGNE~~~------ 452 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHA--QKNHPSIIIWSLGNESGY------ 452 (1021)
T ss_pred HHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccc------
Confidence 6789999999997776655421 1000000 00 0011211 223333332 23333 779999999632
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcC
Q 009102 207 SVDAELYGKDLINLKNIINELYKN 230 (543)
Q Consensus 207 ~~t~~~Ya~d~~~~~~~~~~~~~~ 230 (543)
+..+.++.+++|+.+|+
T Consensus 453 -------g~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 453 -------GCNIRAMYHAAKALDDT 469 (1021)
T ss_pred -------cHHHHHHHHHHHHhCCC
Confidence 22456788888888775
No 42
>smart00632 Aamy_C Aamy_C domain.
Probab=27.85 E-value=3.2e+02 Score=21.87 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=13.5
Q ss_pred EEEEEecCCCCEEEEEEeCCCCC
Q 009102 404 SYAHCSKEREGITLLLINLSNQT 426 (543)
Q Consensus 404 ~YA~c~~~~g~vtv~lIN~~~~~ 426 (543)
+||.+. |...+++||+...+
T Consensus 10 ~laF~R---g~~g~VaiN~~~~~ 29 (81)
T smart00632 10 QIAFER---GSKGFVAINRSDSD 29 (81)
T ss_pred EEEEEC---CCeEEEEEECCCCc
Confidence 455442 56788889998753
No 43
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=27.71 E-value=1.1e+02 Score=31.01 Aligned_cols=129 Identities=10% Similarity=0.029 Sum_probs=62.2
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCc-cccCCCCCCCCChHHHHHHHHHHHhCCcccceeeeeccCCCCCCCCC
Q 009102 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRH-NIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGA 206 (543)
Q Consensus 128 ~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~-~~~~~~~~~~W~~~~A~~~l~y~~~~g~~i~~wElGNEpd~~~~~g~ 206 (543)
.++.+....+.+||.+-|++-++- |.+=..- ...+.+....+......++++|++++|..|..|---+.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv-D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~--------- 97 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV-DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET--------- 97 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE-BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH---------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe-ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc---------
Confidence 456777899999999999998874 4432100 00000111223346788999999999988877743222
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCCCHHHHHHHHhhhCCCcccEEEEEe
Q 009102 207 SVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHI 268 (543)
Q Consensus 207 ~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~~~~w~~~fl~~~~~~~id~vs~H~ 268 (543)
.++...|-++.+++-+.+++. .-.+.|..+++-++-.-..|.+++++.+....+ .|.+|-
T Consensus 98 ~~~~~~~~~~~~~~f~~~~~~-Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~L-mvnfHg 157 (273)
T PF10566_consen 98 GGNVANLEKQLDEAFKLYAKW-GVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKL-MVNFHG 157 (273)
T ss_dssp TTBHHHHHCCHHHHHHHHHHC-TEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT--EEEETT
T ss_pred chhhHhHHHHHHHHHHHHHHc-CCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCc-EEEecC
Confidence 233344444433333333331 100012223332221123567777776544322 456665
No 44
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=26.91 E-value=71 Score=34.80 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCC-hHHHHHHHHHHH----hCCcccceeeeeccCCCC
Q 009102 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (543)
Q Consensus 132 ~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~-~~~A~~~l~y~~----~~g~~i~~wElGNEpd~~ 201 (543)
+.-+++.+-+++.|.++|++|.=-.-.....+ .|.|. ...+..+++||+ ..|..|++|--=|||+..
T Consensus 99 ~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~---~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~ 170 (455)
T PF00232_consen 99 DFYRDLIDELLENGIEPIVTLYHFDLPLWLED---YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVF 170 (455)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS--BHHHHH---HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHH
T ss_pred hhhHHHHHHHHhhccceeeeeeecccccceee---cccccCHHHHHHHHHHHHHHHHHhCCCcceEEecccccee
Confidence 34578888889999999999972211100000 25664 567888899974 568889999999999854
No 45
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=26.36 E-value=6.3e+02 Score=24.86 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCCh---HHHHHHHHHHHhCCcccceeeeeccCCCCCCCCCCCCHH
Q 009102 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS---NNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAE 211 (543)
Q Consensus 135 d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~---~~A~~~l~y~~~~g~~i~~wElGNEpd~~~~~g~~~t~~ 211 (543)
.++-..++++|.. |+.+|+++.- ..|+. .+|..+++|+..-|-+-.--+-=|. +. +.+.....+
T Consensus 52 a~vka~Aek~Gl~-IvSINAlypF---------n~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd--~s-~~~~~vr~~ 118 (272)
T COG4130 52 AEVKALAEKAGLT-IVSINALYPF---------NEWTEERVAEARGLADYAAACGAKALVLCPLND--GS-WPGTAVRRE 118 (272)
T ss_pred HHHHHHHHHcCcE-EEEeeccccc---------cccChHHHHHHHHHHHHHHhcCCceEEEEeccC--CC-CCCcccchH
Confidence 5677788999985 6789998863 46764 5788999999877765323344444 22 334456667
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCC-----CHHHHHHHHhhhCC
Q 009102 212 LYGKDLINLKNIINELYKNSSSKPTILAPGGFF-----DQEWYAKFLQVSGS 258 (543)
Q Consensus 212 ~Ya~d~~~~~~~~~~~~~~~~~~~~lvgP~~~~-----~~~w~~~fl~~~~~ 258 (543)
+...-.+.++-++++. .- .-+|-|=++. ...|..+.+.+.++
T Consensus 119 ~lv~AlkaLkpil~~~-gi----~GLVEPLGF~~csLRsk~eA~~aI~aa~g 165 (272)
T COG4130 119 DLVEALKALKPILDEY-GI----TGLVEPLGFRVCSLRSKAEAAEAIRAAGG 165 (272)
T ss_pred HHHHHHHHhhHHHHHh-Cc----cccccccCchhhhhhhHHHHHHHHHHhCC
Confidence 7777777777777664 11 1355565542 23566666665544
No 46
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=25.03 E-value=2e+02 Score=31.66 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=77.8
Q ss_pred cCCCeeEEEeeccCCCCCCCCCCCCCCCcccCCCCCcHHHHHHHHHcCCceEec----CCcccceeeEecCCCCCCCCCc
Q 009102 39 NDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIRI----GGSLQDQVLYDVGDLKAPCHPF 114 (543)
Q Consensus 39 i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~l~~l~k~L~p~~lRi----GG~~~D~~~~~~~~~~~~~~p~ 114 (543)
+...=.-+++||+|+--- .++ .|| .+++..|...+-|.++-+ ||++++....-.+..+..|.
T Consensus 12 ~~~g~~~~S~EfFpPkT~---------~Gv--~NL-~~R~dRm~~~g~P~FvdvTWgagG~ta~~s~~ias~~q~~~~-- 77 (590)
T KOG0564|consen 12 LVSGKTAFSFEFFPPKTE---------AGV--PNL-YERMDRMSEGGPPTFVDVTWGAGGSTAELSLGIASSAQNVCG-- 77 (590)
T ss_pred ccccCceeEEEecCcccc---------ccc--ccH-HHHHHHHHhcCCCeEEEEEecCCCCcccccHHHHHHHHHhcC--
Confidence 333445678999887311 111 234 445566666555878764 56555332222111110110
Q ss_pred ccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHH-----HHHHHHHHHhC-Ccc
Q 009102 115 RKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNN-----ARDFLKYTISM-GYQ 188 (543)
Q Consensus 115 ~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~-----A~~~l~y~~~~-g~~ 188 (543)
.+.-+- .+-.....+.-|.-.+-|+..|.+=|+.| .|+ .+- ....|...+ |.++++|.+++ |..
T Consensus 78 --v~t~mH-lTCtn~~~~~Id~aLe~a~~~GirNILAL---RGD--pP~--g~d~~~~~e~gF~yA~DLVr~Irs~YGDy 147 (590)
T KOG0564|consen 78 --LETCMH-LTCTNMPKEMIDKALEQAKALGIRNILAL---RGD--PPI--GQDKWVEEEGGFRYAVDLVRYIRSKYGDY 147 (590)
T ss_pred --ccceee-eeccCccHHHHHHHHHHHHHhCchhhhhh---cCC--CCC--CccccccccCCchhHHHHHHHHHHHhCCe
Confidence 000000 00001223455777888999999988865 232 111 123355544 99999998754 332
Q ss_pred cceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 009102 189 IDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIIN 225 (543)
Q Consensus 189 i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~ 225 (543)
. ...+.=-|.++ +. .-..+|-.|...+.+-++
T Consensus 148 F-~IgVAgYPEgh---pe-~~~~~~~~Dl~yLk~Kvd 179 (590)
T KOG0564|consen 148 F-CIGVAGYPEGH---PE-APSHDYLADLPYLKEKVD 179 (590)
T ss_pred E-EEEeccCCCCC---cC-CcccchhhhhHHHHHhhc
Confidence 2 33333334443 21 222347777777766554
No 47
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=24.74 E-value=62 Score=33.19 Aligned_cols=46 Identities=11% Similarity=0.328 Sum_probs=35.3
Q ss_pred hhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHHHhCCcc-cceeeeecc
Q 009102 142 NRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQ-IDSWEYGNE 197 (543)
Q Consensus 142 ~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~~-i~~wElGNE 197 (543)
+..|+.+|+|+|=-.+ .-...+.|+.++.|++++|.. +..|.+.=.
T Consensus 219 ~~ig~TpMiG~nD~~~----------e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 219 AMIGVTPMIGVNDVGS----------EVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHccccccccccCCCC----------ceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 4589999999984211 235789999999999998875 889988533
No 48
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=23.95 E-value=3.5e+02 Score=22.70 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHHHhCCcccceeeeeccCCCCCCCCCCCCH
Q 009102 131 MQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDA 210 (543)
Q Consensus 131 ~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~~i~~wElGNEpd~~~~~g~~~t~ 210 (543)
.+.++.+++++++.|++..|.+.-. | ..+-.+.++...+. .|||||--... ..-...+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~--------------~-~~~~~~~l~~l~~~-----G~ei~~H~~~H-~~~~~~~~ 75 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGS--------------W-VERYPDQLRELAAA-----GHEIGNHGWSH-PNLSTLSP 75 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HH--------------H-HHHHHHHHHHHHHT-----T-EEEEE-SSS-SCGGGS-H
T ss_pred hhhHHHHHHHHHhcccceeeeeccc--------------c-cccccccchhHHHH-----HHHHHhcCCcc-cccccCCH
Confidence 4567899999999999999987532 1 22223445544433 57888886544 22235688
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 009102 211 ELYGKDLINLKNIINELYK 229 (543)
Q Consensus 211 ~~Ya~d~~~~~~~~~~~~~ 229 (543)
++..+++.+-++.|++...
T Consensus 76 ~~~~~ei~~~~~~l~~~~g 94 (123)
T PF01522_consen 76 EELRREIERSREILEEITG 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 8889999999999988754
No 49
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=22.42 E-value=1e+02 Score=27.05 Aligned_cols=43 Identities=14% Similarity=0.412 Sum_probs=29.4
Q ss_pred cccchhhHHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHHH
Q 009102 127 GCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI 183 (543)
Q Consensus 127 ~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~ 183 (543)
..|+++.|.++.+|++.+ +-++. +.+..++| |.---++++|++
T Consensus 75 k~IskD~W~~~l~F~~~~------~~dls-------~Yde~~AW-P~liDeFVe~~r 117 (117)
T PF03556_consen 75 KAISKDTWNQFLDFFKTV------DEDLS-------NYDEEGAW-PSLIDEFVEWLR 117 (117)
T ss_dssp SEEEHHHHHHHHHHHHH-------HCCHC-------C--TTSSS--HHHHHHHHHHH
T ss_pred cCcChhHHHHHHHHHHhc------Ccccc-------CCCCCCCC-cHHHHHHHHHhC
Confidence 369999999999999987 22222 22346889 888888888863
No 50
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=21.73 E-value=8.2e+02 Score=24.53 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHHHHhhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHHHhCCcccceeeeeccCCCCCCCCCCCCHHHH
Q 009102 134 WDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELY 213 (543)
Q Consensus 134 wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~~i~~wElGNEpd~~~~~g~~~t~~~Y 213 (543)
.+.+++..++.|++..|=++... ..+-.++++...+. .|||||=-... ..-...+.++.
T Consensus 30 t~riL~lL~~~gikATFFv~g~~---------------~e~~p~lir~i~~~-----GhEIgsHg~sH-~~l~~ls~ee~ 88 (265)
T TIGR03006 30 TDRILDLLDRHGVKATFFTLGWV---------------AERYPELVRRIVAA-----GHELASHGYGH-ERVTTQTPEAF 88 (265)
T ss_pred HHHHHHHHHHcCCcEEEEEeccc---------------hhhCHHHHHHHHHc-----CCEeeeccccC-cCchhCCHHHH
Confidence 47889999999999999886321 11112344444333 46888875443 12235789999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCe-EEccCCCC--CHHHHHHHHhhhCC
Q 009102 214 GKDLINLKNIINELYKNSSSKPT-ILAPGGFF--DQEWYAKFLQVSGS 258 (543)
Q Consensus 214 a~d~~~~~~~~~~~~~~~~~~~~-lvgP~~~~--~~~w~~~fl~~~~~ 258 (543)
.+|..+-.++|+++... .+. +-+|+... ...|..+.|.+.|=
T Consensus 89 ~~eI~~s~~~Le~itG~---~~~gfRaP~~s~~~~t~~a~~iL~e~Gy 133 (265)
T TIGR03006 89 RADIRRSKALLEDLSGQ---PVRGYRAPSFSIGKKNLWALDVLAEAGY 133 (265)
T ss_pred HHHHHHHHHHHHHHhCC---CceEEECCCCCCCCCcHHHHHHHHHCCC
Confidence 99999999999987432 232 44565432 33677788877663
No 51
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=20.48 E-value=5.9e+02 Score=26.82 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=62.6
Q ss_pred ccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh--hcCCCCCCeEE-ccCCCCCHHHHHHHHhhh--CCCccc
Q 009102 188 QIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINEL--YKNSSSKPTIL-APGGFFDQEWYAKFLQVS--GSNVVN 262 (543)
Q Consensus 188 ~i~~wElGNEpd~~~~~g~~~t~~~Ya~d~~~~~~~~~~~--~~~~~~~~~lv-gP~~~~~~~w~~~fl~~~--~~~~id 262 (543)
.| +|--==|++..+-....++++||-+-|+++...+++. .+ ..++. .|.+. .+++... |.+.+|
T Consensus 181 ti-y~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~----~lk~~yspn~~------~~~~~~yYPGd~YVD 249 (355)
T COG4124 181 TI-YWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLP----WLKFMYSPNGG------FKGLEAYYPGDNYVD 249 (355)
T ss_pred EE-EechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCC----eeEEEEcCCCC------cccchhcCCCCceee
Confidence 45 8887778887644445689999999999999998875 22 12332 44432 2233332 334677
Q ss_pred EEEEEeecCCCCCCchhhhcccChhHhhHHHHHHHHHHHHHHHhCCCCcEEEccccccc
Q 009102 263 GVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAY 321 (543)
Q Consensus 263 ~vs~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~ 321 (543)
.|-.--|...+.. . .+.....++.+.+...+..+ .+-+||+|+.|+|...
T Consensus 250 iVGL~~ysd~~~n-~--~~~~~~~tyaelt~~gy~~~------~~~nKPf~faElGp~~ 299 (355)
T COG4124 250 IVGLDVYSDDPYN-Q--GDTGRDKTYAELTGPGYNRV------AGFNKPFGFAELGPEG 299 (355)
T ss_pred eeeeeccccCccc-c--ccccccccHHHHhcCcchhh------hhcCCceeeecccccC
Confidence 7777777543211 0 01111112222111111111 1347999999998654
Done!