BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009103
         (543 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)

Query: 277 SAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSR 336
           +A W  +P  +   TP F    +  ++ AALV  AE  G  +  +            L R
Sbjct: 209 NAHWFALPTLY---TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHR 265

Query: 337 SIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXX 396
           S+   G+  ++ G FGS   TT   EN+G++ +T + S  V+  +  F            
Sbjct: 266 SMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAA 324

Query: 397 XXXXIPLPIFAAIYCVLLGIVAAVGI 422
               IPLP+   +  +L G++ A GI
Sbjct: 325 AIQMIPLPVMGGVSLLLYGVIGASGI 350



 Score = 32.3 bits (72), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 41  IHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLL 100
           +   PP  Q + L+ QH   M G TV     LVP++   H +   V    L  +G+ TLL
Sbjct: 8   VSERPPLLQTIPLSLQHLFAMFGATV-----LVPVL--FHINPATV----LLFNGIGTLL 56

Query: 101 QTLFGT-RLPTVMGPSAAFTLPVL 123
                  ++P  +G S AF  PVL
Sbjct: 57  YLFICKGKIPAYLGSSFAFISPVL 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,561,991
Number of Sequences: 62578
Number of extensions: 555664
Number of successful extensions: 1258
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 10
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)