Query 009103
Match_columns 543
No_of_seqs 195 out of 1693
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 18:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009103.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009103hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 21.0 1.4E+02 0.01 26.8 8.8 36 66-103 46-81 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 10.3 1.5E+02 0.011 25.6 5.6 42 69-110 31-76 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 4.0 1E+03 0.073 20.2 14.8 37 68-104 272-308 (447)
4 d2fug71 d.82.2.2 (7:3-129) NAD 3.1 56 0.0041 25.7 -2.2 33 503-535 21-53 (127)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 2.5 5.7E+02 0.042 14.5 2.5 14 234-247 12-25 (32)
6 d1yu8x1 a.14.1.1 (X:42-76) Vil 2.5 96 0.007 19.1 -1.2 10 524-533 14-23 (35)
7 d1v8ca2 d.129.5.1 (A:88-165) M 2.5 98 0.0072 21.7 -1.3 18 517-534 20-37 (78)
8 d2axti1 f.23.37.1 (I:1-35) Pho 2.4 2.3E+02 0.017 17.1 0.6 11 22-32 24-34 (35)
9 d2axtz1 f.17.5.1 (Z:1-62) Phot 2.3 7.8E+02 0.057 16.6 3.5 23 426-448 29-51 (62)
10 d1sxea_ a.60.1.1 (A:) Transcri 2.1 4.4E+02 0.032 19.4 2.2 20 7-26 8-27 (97)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.97 E-value=1.4e+02 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009103 66 VLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (543)
Q Consensus 66 i~vPiila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~ 103 (543)
++.|.+ .+ .|++..|...+.+...+..++++++-+.
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~ 81 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGS 81 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444654 33 6999999998888888888888888775
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.31 E-value=1.5e+02 Score=25.56 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH----hcCCcce
Q 009103 69 SSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPT 110 (543)
Q Consensus 69 Piila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~----~G~rlPi 110 (543)
|..+.+..|+++.|...+.+...+...++..+.+. +|.|..+
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l 76 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 55566668999998888888888888888887765 5666443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=1e+03 Score=20.17 Aligned_cols=37 Identities=11% Similarity=-0.086 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 009103 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (543)
Q Consensus 68 vPiila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~~ 104 (543)
.|..+.+..+.+..+.........+...+++++..++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4666666678888777777766667777777776653
No 4
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=3.10 E-value=56 Score=25.66 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=20.4
Q ss_pred CccccCCCcccccCCCCCCCCCCcccCCCcccc
Q 009103 503 TVADRGLPWWKPFQHRKGDSRNDEFYSFPLRIN 535 (543)
Q Consensus 503 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (543)
...+||++-=++.+--+.--|+++.|.+|+-++
T Consensus 21 ~A~~rGv~feKeaDFPDyIYRMERpYdLPTTvM 53 (127)
T d2fug71 21 YAQAKGVRFEKEADFPDFIYRMERPYDLPTTIM 53 (127)
T ss_dssp HHHHHTCEEEEEEECHHHHTCCSSCCCCSCSEE
T ss_pred HHHhcCCcceecccccHHHHhccccccCChhhe
Confidence 346778755344222223346888999999775
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.53 E-value=5.7e+02 Score=14.47 Aligned_cols=14 Identities=50% Similarity=0.615 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHH
Q 009103 234 FALLFCIGVVWAFA 247 (543)
Q Consensus 234 ~aiLigivvG~i~a 247 (543)
.+...|+.+|.+++
T Consensus 12 ialffgiavgiifa 25 (32)
T d2e74e1 12 IALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheee
Confidence 35566677776654
No 6
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.46 E-value=96 Score=19.11 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=7.1
Q ss_pred CCcccCCCcc
Q 009103 524 NDEFYSFPLR 533 (543)
Q Consensus 524 ~~~~~~~~~~ 533 (543)
.++||.+|.|
T Consensus 14 r~eF~~LP~W 23 (35)
T d1yu8x1 14 RSAFANLPLW 23 (35)
T ss_dssp HHHHHTSCHH
T ss_pred HHHHHHCcHh
Confidence 4577777766
No 7
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.45 E-value=98 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=13.4
Q ss_pred CCCCCCCCCcccCCCccc
Q 009103 517 HRKGDSRNDEFYSFPLRI 534 (543)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~ 534 (543)
+|+.+++.+.+|++|--.
T Consensus 20 ~wgg~~e~egv~rlpga~ 37 (78)
T d1v8ca2 20 EWGGTREGEGVYRLPGAV 37 (78)
T ss_dssp HTTCEEEETTEEEETTEE
T ss_pred HhCCccccceEEecCCeE
Confidence 567777888889988543
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.43 E-value=2.3e+02 Score=17.09 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=6.9
Q ss_pred CCCCCCCCccc
Q 009103 22 LSRGPIWTPAE 32 (543)
Q Consensus 22 ~~~~~~~~~~~ 32 (543)
||.||.+.|.+
T Consensus 24 LSnDP~RnP~r 34 (35)
T d2axti1 24 LSGDPARNPKR 34 (35)
T ss_dssp HTTCTTCSSCC
T ss_pred ccCCCCCCCCC
Confidence 46677766653
No 9
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.28 E-value=7.8e+02 Score=16.60 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=17.7
Q ss_pred hhccCCCcccchhhhhHHHhhhh
Q 009103 426 QFANNNSMRNIYILGLSLFLGIS 448 (543)
Q Consensus 426 ~~~~~~~~rn~~Ivg~sl~~Gl~ 448 (543)
+-.+|++++|..-.|.++.+|+-
T Consensus 29 SP~gW~~sK~lvfsG~~~W~~LV 51 (62)
T d2axtz1 29 SPQDWDRSKQLIFLGSGLWIALV 51 (62)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCceEEEchhHHHHHH
Confidence 45688877888888888888774
No 10
>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.14 E-value=4.4e+02 Score=19.38 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 009103 7 HHPPPPPQAAPPSLGLSRGP 26 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (543)
|+|||......-.+.+..||
T Consensus 8 ~~p~p~~~~~~~~l~iP~DP 27 (97)
T d1sxea_ 8 HMPPPNMTTNERRVIVPADP 27 (97)
T ss_dssp GSCCCCCSTTTTSSSSCSST
T ss_pred cCccCCCcccchhcCCCCCh
Confidence 44444444444444444444
Done!