BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009105
         (543 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GVJ|A Chain A, Crystal Structure Of An Endo-Neuraminidasenf Mutant
          Length = 670

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)

Query: 449 ISQFHI-WLRSNTSNGQ----PKWLLSLIPEYPMLNFMLTTAIYVLISHRLFELTST 500
           +S+ H+ W++S   +GQ    P+WL  L P+YP +N+   +    +  +RLF +  T
Sbjct: 112 VSRLHVSWVKSG-DDGQTWSTPEWLTDLHPDYPTVNYHCMS--MGVCRNRLFAMIET 165


>pdb|3GVK|A Chain A, Crystal Structure Of Endo-Neuraminidase Nf Mutant
 pdb|3GVK|B Chain B, Crystal Structure Of Endo-Neuraminidase Nf Mutant
 pdb|3GVK|C Chain C, Crystal Structure Of Endo-Neuraminidase Nf Mutant
          Length = 670

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)

Query: 449 ISQFHI-WLRSNTSNGQ----PKWLLSLIPEYPMLNFMLTTAIYVLISHRLFELTST 500
           +S+ H+ W++S   +GQ    P+WL  L P+YP +N+   +    +  +RLF +  T
Sbjct: 112 VSRLHVSWVKSG-DDGQTWSTPEWLTDLHPDYPTVNYHCMS--MGVCRNRLFAMIET 165


>pdb|3JU4|A Chain A, Crystal Structure Analysis Of Endosialidasenf At 0.98 A
           Resolution
 pdb|3GVL|A Chain A, Crystal Structure Of Endo-Neuraminidasenf
          Length = 670

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)

Query: 449 ISQFHI-WLRSNTSNGQ----PKWLLSLIPEYPMLNFMLTTAIYVLISHRLFELTST 500
           +S+ H+ W++S   +GQ    P+WL  L P+YP +N+   +    +  +RLF +  T
Sbjct: 112 VSRLHVSWVKSG-DDGQTWSTPEWLTDLHPDYPTVNYHCMS--MGVCRNRLFAMIET 165


>pdb|1V0E|A Chain A, Endosialidase Of Bacteriophage K1f
 pdb|1V0E|B Chain B, Endosialidase Of Bacteriophage K1f
 pdb|1V0E|C Chain C, Endosialidase Of Bacteriophage K1f
 pdb|1V0E|D Chain D, Endosialidase Of Bacteriophage K1f
 pdb|1V0E|E Chain E, Endosialidase Of Bacteriophage K1f
 pdb|1V0E|F Chain F, Endosialidase Of Bacteriophage K1f
 pdb|1V0F|A Chain A, Endosialidase Of Bacteriophage K1f In Complex With
           Oligomeric Alpha-2,8-Sialic Acid
 pdb|1V0F|B Chain B, Endosialidase Of Bacteriophage K1f In Complex With
           Oligomeric Alpha-2,8-Sialic Acid
 pdb|1V0F|C Chain C, Endosialidase Of Bacteriophage K1f In Complex With
           Oligomeric Alpha-2,8-Sialic Acid
 pdb|1V0F|D Chain D, Endosialidase Of Bacteriophage K1f In Complex With
           Oligomeric Alpha-2,8-Sialic Acid
 pdb|1V0F|E Chain E, Endosialidase Of Bacteriophage K1f In Complex With
           Oligomeric Alpha-2,8-Sialic Acid
 pdb|1V0F|F Chain F, Endosialidase Of Bacteriophage K1f In Complex With
           Oligomeric Alpha-2,8-Sialic Acid
          Length = 666

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)

Query: 449 ISQFHI-WLRSNTSNGQ----PKWLLSLIPEYPMLNFMLTTAIYVLISHRLFELTST 500
           +S+ H+ W++S   +GQ    P+WL  L P+YP +N+   +    +  +RLF +  T
Sbjct: 108 VSRLHVSWVKSG-DDGQTWSTPEWLTDLHPDYPTVNYHCMS--MGVCRNRLFAMIET 161


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.142    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,678,849
Number of Sequences: 62578
Number of extensions: 615658
Number of successful extensions: 1354
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 5
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)