Query 009105
Match_columns 543
No_of_seqs 121 out of 139
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h88_D Succinate dehydrogenase 17.3 32 0.0011 29.6 0.4 27 211-239 77-103 (103)
2 2krx_A ASL3597 protein; struct 9.0 1.4E+02 0.0047 25.7 1.8 21 165-185 18-39 (94)
3 1rkl_A Dolichyl-diphosphooligo 7.4 1.8E+02 0.006 21.0 1.5 14 183-196 18-31 (36)
4 3zwl_E Eukaryotic translation 6.8 1.5E+02 0.005 22.7 0.9 17 169-185 14-30 (50)
5 2lat_A Dolichyl-diphosphooligo 6.8 1.7E+02 0.0057 21.2 1.1 14 183-196 18-31 (37)
6 3h87_C Putative uncharacterize 5.8 1.9E+02 0.0064 23.7 1.1 32 420-452 4-35 (73)
7 3vr8_D Succinate dehydrogenase 5.3 1.9E+02 0.0065 26.9 0.9 38 200-239 119-156 (156)
8 1pi7_A VPU protein, U ORF prot 5.0 5.1E+02 0.018 18.5 2.8 25 10-35 7-31 (36)
9 1c1k_A BPT4 gene 59 helicase a 4.9 1.9E+02 0.0065 28.3 0.7 12 440-451 153-164 (217)
10 3sok_A Fimbrial protein; pilus 4.9 4.3E+02 0.015 23.2 3.0 23 345-367 10-32 (151)
No 1
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=17.27 E-value=32 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.6
Q ss_pred hhcccCceEEEEecCCCchhHHHHHHHHH
Q 009105 211 WMTGFGNFSYYYIRKDFSLPRFAQMMWRL 239 (543)
Q Consensus 211 fmTGYGhfsYf~~k~DFsl~R~~qvl~RL 239 (543)
..|++| .|++.++|=|+.+..+.+|+|
T Consensus 77 ~~t~~G--l~~~~~~d~Gi~~~ik~lW~l 103 (103)
T 2h88_D 77 AITFTG--LCYFNYYDVGICKAVAMLWSI 103 (103)
T ss_dssp HHHHHH--HHHHHHHSSCHHHHHHHHHTC
T ss_pred HHHHHH--HheeeecCCcHHHHHHHHhcC
Confidence 467776 677889999999999999985
No 2
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=9.01 E-value=1.4e+02 Score=25.73 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.1
Q ss_pred CCcccccCchhhhHh-HHHHHH
Q 009105 165 GKTIQYLNRHQTEEW-KGWMQV 185 (543)
Q Consensus 165 gk~~~~LnRdQTeEW-KGWMQ~ 185 (543)
|++-.||+.+++.|| |+|.|-
T Consensus 18 ~~~EqfLT~~Ell~~Lk~~L~~ 39 (94)
T 2krx_A 18 NQPEQFLTTIELLEKLKGELEK 39 (94)
T ss_dssp SSCSEEECHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHh
Confidence 466779999999998 888764
No 3
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=7.43 E-value=1.8e+02 Score=20.98 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.1
Q ss_pred HHHHHHHHhhccch
Q 009105 183 MQVLFLMYHYFAAT 196 (543)
Q Consensus 183 MQ~~iLiYHY~gAS 196 (543)
|=+++.+|||.++.
T Consensus 18 ~~~LIvlYH~v~~n 31 (36)
T 1rkl_A 18 MMTLIVIYHAVDST 31 (36)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 34678899997763
No 4
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=6.82 E-value=1.5e+02 Score=22.71 Aligned_cols=17 Identities=12% Similarity=0.352 Sum_probs=12.9
Q ss_pred cccCchhhhHhHHHHHH
Q 009105 169 QYLNRHQTEEWKGWMQV 185 (543)
Q Consensus 169 ~~LnRdQTeEWKGWMQ~ 185 (543)
...=|.+.+||+-|-+-
T Consensus 14 Ie~RRrlLeEW~awRa~ 30 (50)
T 3zwl_E 14 ILHQRELLKQWTEYREK 30 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33447899999999763
No 5
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=6.81 E-value=1.7e+02 Score=21.21 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=10.1
Q ss_pred HHHHHHHHhhccch
Q 009105 183 MQVLFLMYHYFAAT 196 (543)
Q Consensus 183 MQ~~iLiYHY~gAS 196 (543)
|=+++.+|||.++.
T Consensus 18 ~~~LIVlYH~v~~n 31 (37)
T 2lat_A 18 LFLLVVLYHYVAVN 31 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 34678899997653
No 6
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=5.79 E-value=1.9e+02 Score=23.70 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHhccchhhhhhhHHHHHHHhhhhHHHHHhhh
Q 009105 420 ICLRNFTQQLRSVSLTLFAWLGKITLETYISQF 452 (543)
Q Consensus 420 I~LRN~t~~LRs~~S~~fAwlGkiSLEtyIlQf 452 (543)
|.+||++.-....--...+--| .|+|.|+.+.
T Consensus 4 i~IRnvpdev~~~L~~rAa~~G-~S~~~ylr~~ 35 (73)
T 3h87_C 4 VLIRDIPDDVLASLDAIAARLG-LSRTEYIRRR 35 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 3579999999999888888888 7999999864
No 7
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=5.30 E-value=1.9e+02 Score=26.88 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcccCceEEEEecCCCchhHHHHHHHHH
Q 009105 200 NAIRIFIAAYVWMTGFGNFSYYYIRKDFSLPRFAQMMWRL 239 (543)
Q Consensus 200 n~IRvlVAAYlfmTGYGhfsYf~~k~DFsl~R~~qvl~RL 239 (543)
+..+...-+....|++| .|+++++|-|+.+..+.+|+|
T Consensus 119 K~A~~lL~~~s~~tl~G--Ly~f~t~dvGit~~Ik~lW~l 156 (156)
T 3vr8_D 119 AAVRVGAYIFTACLLAG--LLYFNEHDVGLTRAFEMVWEL 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH--heEeeecCccHHHHHHHHhcC
Confidence 33344444445667776 577789999999999999975
No 8
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=5.01 E-value=5.1e+02 Score=18.46 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=17.0
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhccc
Q 009105 10 GQVSFLLGIIPVFVAWIYSEFLEYKK 35 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (543)
+-+++..+++-.++.|... +.||||
T Consensus 7 ~ivalivalIiaIVVWtiv-~ieYrk 31 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIV-IIEGRG 31 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5566777788888889843 445554
No 9
>1c1k_A BPT4 gene 59 helicase assembly protein; DNA replication, DNA recombination, forked DNA, DNA binding protein; 1.45A {Enterobacteria phage T4} SCOP: a.120.1.1
Probab=4.94 E-value=1.9e+02 Score=28.26 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=10.3
Q ss_pred HhhhhHHHHHhh
Q 009105 440 LGKITLETYISQ 451 (543)
Q Consensus 440 lGkiSLEtyIlQ 451 (543)
=|.||+||++.-
T Consensus 153 sg~IS~ET~vil 164 (217)
T 1c1k_A 153 SNIISFETFILL 164 (217)
T ss_dssp TTSSCHHHHHHH
T ss_pred cCeeehhHHHHH
Confidence 499999999973
No 10
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=4.92 E-value=4.3e+02 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhh
Q 009105 345 IWIIGMIYAYYHPTAEKWMEKLE 367 (543)
Q Consensus 345 iv~~GMl~A~~~~~~~~~~~~l~ 367 (543)
++++|++.|++.|.++++.++.+
T Consensus 10 iaIigiLaaia~p~~~~~~~~~~ 32 (151)
T 3sok_A 10 VAIIGILAAFAIPAYNDYIARSQ 32 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988766443
Done!