Query 009105
Match_columns 543
No_of_seqs 121 out of 139
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 18:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009105.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009105hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 13.9 54 0.0039 25.4 3.0 23 345-367 10-32 (158)
2 d1v2xa_ c.116.1.1 (A:) tRNA (G 7.6 1.8E+02 0.013 24.4 4.4 42 469-510 139-183 (191)
3 d1v54m_ f.23.7.1 (M:) Mitochon 7.2 1.4E+02 0.01 20.6 2.7 32 5-36 8-43 (43)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 5.9 7.4E+02 0.054 22.9 8.5 11 345-355 239-249 (444)
5 d1jb0m_ f.23.19.1 (M:) Subunit 5.4 2.5E+02 0.018 17.8 2.9 25 7-31 3-29 (31)
6 d1kqfb2 f.23.22.1 (B:246-290) 4.7 1.2E+02 0.0088 21.0 1.1 18 177-194 6-33 (45)
7 d1c1ka_ a.120.1.1 (A:) gene 59 4.5 1E+02 0.0073 27.7 0.7 11 441-451 154-164 (217)
8 d2fqma1 d.378.1.1 (A:107-171) 4.1 1.2E+02 0.0089 22.4 0.8 19 169-187 22-40 (65)
9 d1v54d_ f.23.1.1 (D:) Mitochon 3.1 5.9E+02 0.043 21.0 4.5 29 504-532 68-96 (144)
10 d1q90r_ f.23.12.1 (R:) ISP sub 3.0 6.2E+02 0.045 16.7 3.6 25 506-531 4-28 (39)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=13.87 E-value=54 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhh
Q 009105 345 IWIIGMIYAYYHPTAEKWMEKLE 367 (543)
Q Consensus 345 iv~~GMl~A~~~~~~~~~~~~l~ 367 (543)
++++|+|.|++.|.+.++.++-+
T Consensus 10 iaIIgILaaia~P~~~~~~~~a~ 32 (158)
T d2pila_ 10 IAIVGILAAVALPAYQDYTARAQ 32 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988866443
No 2
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=7.59 E-value=1.8e+02 Score=24.43 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=31.2
Q ss_pred EEecC---CCCchHHHHHHHHHHHHHHHHHHHHhchhheeecccc
Q 009105 469 LSLIP---EYPMLNFMLTTAIYVLISHRLFELTSTLKSVFVPTKD 510 (543)
Q Consensus 469 L~liP---g~p~lN~~ltt~IFv~vS~rv~~~T~~L~~~~vP~~d 510 (543)
.+-|| +.+.||+.+++.|.++=.+|=...++.-...-+|+++
T Consensus 139 ~v~IPm~~~~~SLNvsvAa~I~lyE~~rq~~~~g~~~~~~~~~~~ 183 (191)
T d1v2xa_ 139 AIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYDRPRLDPEL 183 (191)
T ss_dssp EEECCCCSSCSCCCHHHHHHHHHHHHHHHHHHHTGGGSCCSCHHH
T ss_pred EEEeCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCCCCCHHH
Confidence 44566 5778999999999887676766777777776666443
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.16 E-value=1.4e+02 Score=20.56 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCCcchhhhhhhHHH----HHHHHHHHHHhhcccc
Q 009105 5 RPITPGQVSFLLGIIP----VFVAWIYSEFLEYKKV 36 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 36 (543)
.|+++++++.-++.+- +-.+|+.|..=+|||+
T Consensus 8 ~~ls~~E~aigLt~~f~~~L~PaGwVLshLe~YKk~ 43 (43)
T d1v54m_ 8 TPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS 43 (43)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHhccC
Confidence 5788888776554321 2368999998889985
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=5.89 E-value=7.4e+02 Score=22.91 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q 009105 345 IWIIGMIYAYY 355 (543)
Q Consensus 345 iv~~GMl~A~~ 355 (543)
....|++++..
T Consensus 239 ~~~lgi~~g~~ 249 (444)
T d1otsa_ 239 YLILGIIFGIF 249 (444)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45567777653
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=5.39 E-value=2.5e+02 Score=17.79 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=18.2
Q ss_pred CCcch--hhhhhhHHHHHHHHHHHHHh
Q 009105 7 ITPGQ--VSFLLGIIPVFVAWIYSEFL 31 (543)
Q Consensus 7 ~~~~~--~~~~~~~~~~~~~~~~~~~~ 31 (543)
++.-| ++..++++|-+.||-.+.=|
T Consensus 3 lsdtqv~valvial~pg~lafrlatel 29 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLSTEL 29 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445 46688899999999877543
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.69 E-value=1.2e+02 Score=21.04 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=11.9
Q ss_pred hHhHHHHH----------HHHHHHhhcc
Q 009105 177 EEWKGWMQ----------VLFLMYHYFA 194 (543)
Q Consensus 177 eEWKGWMQ----------~~iLiYHY~g 194 (543)
.=||||+- ++-.++||.+
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv~ 33 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYIG 33 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhe
Confidence 45999876 3345677754
No 7
>d1c1ka_ a.120.1.1 (A:) gene 59 helicase assembly protein {Bacteriophage T4 [TaxId: 10665]}
Probab=4.49 E-value=1e+02 Score=27.68 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=9.4
Q ss_pred hhhhHHHHHhh
Q 009105 441 GKITLETYISQ 451 (543)
Q Consensus 441 GkiSLEtyIlQ 451 (543)
|+|||||.|.-
T Consensus 154 ~~IslETlvIL 164 (217)
T d1c1ka_ 154 NIISFETFILL 164 (217)
T ss_dssp TSSCHHHHHHH
T ss_pred CCchHhHHHHH
Confidence 67999999874
No 8
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=4.15 E-value=1.2e+02 Score=22.38 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.9
Q ss_pred cccCchhhhHhHHHHHHHH
Q 009105 169 QYLNRHQTEEWKGWMQVLF 187 (543)
Q Consensus 169 ~~LnRdQTeEWKGWMQ~~i 187 (543)
.=|..+||+.|+-=.-.+.
T Consensus 22 ~gLt~~Q~~QW~~TIeav~ 40 (65)
T d2fqma1 22 EGLSGEQKSQWMLTIKAVV 40 (65)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 3489999999986555443
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.12 E-value=5.9e+02 Score=21.02 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=17.1
Q ss_pred eeecccccHHHHHHHHHHHHHHHHHHHHH
Q 009105 504 VFVPTKDNRRLLCNFLAAVAISLCLYCVS 532 (543)
Q Consensus 504 ~~vP~~d~~~~~~~~~~~~~~~~~~~~~~ 532 (543)
+--|..++|.++--+++++.+++.++.+.
T Consensus 68 ~~~p~gewK~v~g~~~~~i~~s~~i~~~~ 96 (144)
T d1v54d_ 68 MNRSTNEWKTVVGAAMFFIGFTALLLIWE 96 (144)
T ss_dssp HTCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34577888877765555555555554443
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.99 E-value=6.2e+02 Score=16.74 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=17.3
Q ss_pred ecccccHHHHHHHHHHHHHHHHHHHH
Q 009105 506 VPTKDNRRLLCNFLAAVAISLCLYCV 531 (543)
Q Consensus 506 vP~~d~~~~~~~~~~~~~~~~~~~~~ 531 (543)
|| +-+|+-+-|++..+.+++...+.
T Consensus 4 Vp-DMgrR~~MNLll~G~~~~~~~g~ 28 (39)
T d1q90r_ 4 VP-DMNKRNIMNLILAGGAGLPITTL 28 (39)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-chhHHHHHHHHHHhccchhhhhh
Confidence 67 56677777887777777666543
Done!