BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009107
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), VP2, PH7.5, T4
Degrees C
pdb|1Z1C|A Chain A, Structural Determinants Of Tissue Tropism And In Vivo
Pathogenicity For The Parvovirus Minute Virus Of Mice
Length = 587
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 167 ENVSGTDFLSPSPVKTHVNGTDNRKNGGVKEKAIDDKSNENGKSGGAKGKTNDDKRSETD 226
E +GT + +PVK NR+ G + +++ + + A+G + + E +
Sbjct: 264 EFATGTYYFDTNPVKLTHTWQTNRQLGQPPLLSTFPEADTDAGTLTAQGSRHGATQMEVN 323
Query: 227 --NGKIGVGKEKTG--DKSDETENGKNG-RAKEKPIADKTNVTDNEKNGGVKEKSDKSNE 281
+ I + G ++ E + G A K AD T D E NG V+ K +
Sbjct: 324 WVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKVPADVTQGMDREANGSVRYSYGKQHG 383
Query: 282 TDNGKNGGAKEKNTDDKSN 300
+ +G A E+ T D++N
Sbjct: 384 ENWAAHGPAPERYTWDETN 402
>pdb|2XGK|A Chain A, Virus Like Particle Of L172w Mutant Of Minute Virus Of
Mice - The Immunosuppressive Strain
Length = 587
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 167 ENVSGTDFLSPSPVKTHVNGTDNRKNGGVKEKAIDDKSNENGKSGGAKGKTNDDKRSETD 226
E +GT + +PVK NR+ G + +++ + + A+G + + E +
Sbjct: 264 EFATGTYYFDTNPVKLTHTWQTNRQLGQPPLLSTFPEADTDAGTLTAQGSRHGATQMEVN 323
Query: 227 --NGKIGVGKEKTG--DKSDETENGKNG-RAKEKPIADKTNVTDNEKNGGVKEKSDKSNE 281
+ I + G ++ E + G A K AD T D E NG V+ K +
Sbjct: 324 WVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKVPADVTQGMDREANGSVRYSYGKQHG 383
Query: 282 TDNGKNGGAKEKNTDDKSN 300
+ +G A E+ T D++N
Sbjct: 384 ENWAAHGPAPERYTWDETN 402
>pdb|1KGE|A Chain A, Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 55 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 114
Query: 197 E 197
+
Sbjct: 115 K 115
>pdb|1ALQ|A Chain A, Circularly Permuted Beta-Lactamase From Staphylococcus
Aureus Pc1
Length = 266
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 100 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 159
Query: 197 E 197
+
Sbjct: 160 K 160
>pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
Length = 258
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 55 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 114
Query: 197 E 197
+
Sbjct: 115 K 115
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 55 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 114
Query: 197 E 197
+
Sbjct: 115 K 115
>pdb|1DJB|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
298k
pdb|1DJC|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
120k
Length = 257
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 54 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 113
Query: 197 E 197
+
Sbjct: 114 K 114
>pdb|1KGF|A Chain A, Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 55 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 114
Query: 197 E 197
+
Sbjct: 115 K 115
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 258
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 55 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 114
Query: 197 E 197
+
Sbjct: 115 K 115
>pdb|1BLC|A Chain A, Inhibition Of Beta-Lactamase By Clavulanate: Trapped
Intermediates In Cryocrystallographic Studies
pdb|1BLH|A Chain A, Structure Of A Phosphonate-Inhibited Beta-Lactamase. An
Analog Of The Tetrahedral Transition State(Slash)
Intermediate Of Beta-Lactam Hydrolysis
pdb|3BLM|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Staphylococcus Aureus Pc1 At 2.0
Length = 257
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 54 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 113
Query: 197 E 197
+
Sbjct: 114 K 114
>pdb|1BLP|A Chain A, Structural Basis For The Inactivation Of The P54 Mutant Of
Beta- Lactamase From Staphylococcus Aureus Pc1
Length = 257
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 54 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 113
Query: 197 E 197
+
Sbjct: 114 K 114
>pdb|1PIO|A Chain A, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
pdb|1PIO|B Chain B, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
Length = 257
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 55 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 114
Query: 197 E 197
+
Sbjct: 115 K 115
>pdb|1DJA|A Chain A, Structure Of Beta-Lactamase Precursor, K73h Mutant, At
298k
Length = 258
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 144 PPNKGKSPEHVNGMDLLSPSPVKENVSGTDFLSPSPVKTHVNGTDNRKN-------GGVK 196
P NK H+N D+++ SP+ E G D + ++ + +DN N GG+K
Sbjct: 55 PYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIK 114
Query: 197 E 197
+
Sbjct: 115 K 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,160,538
Number of Sequences: 62578
Number of extensions: 883821
Number of successful extensions: 845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 56
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 54 (25.4 bits)