Query 009107
Match_columns 543
No_of_seqs 34 out of 36
Neff 2.2
Searched_HMMs 46136
Date Thu Mar 28 20:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12273 RCR: Chitin synthesis 88.8 0.067 1.5E-06 47.1 -1.7 23 447-469 5-27 (130)
2 PF05454 DAG1: Dystroglycan (D 88.7 0.13 2.8E-06 52.3 0.0 23 448-470 154-176 (290)
3 PHA03283 envelope glycoprotein 88.7 0.82 1.8E-05 50.3 5.9 72 442-516 403-482 (542)
4 PF07213 DAP10: DAP10 membrane 80.7 0.62 1.3E-05 40.2 0.5 28 448-475 44-72 (79)
5 PF12259 DUF3609: Protein of u 76.5 1.1 2.4E-05 46.6 1.0 27 444-470 303-329 (361)
6 PF13908 Shisa: Wnt and FGF in 71.9 2.2 4.7E-05 39.2 1.6 23 442-464 81-103 (179)
7 PF02480 Herpes_gE: Alphaherpe 69.4 1.5 3.3E-05 46.6 0.0 20 451-470 365-384 (439)
8 PF11359 gpUL132: Glycoprotein 66.9 2.4 5.1E-05 42.7 0.7 21 442-462 58-78 (235)
9 PF11614 FixG_C: IG-like fold 66.1 28 0.0006 29.7 6.9 47 353-399 33-83 (118)
10 TIGR00806 rfc RFC reduced fola 55.4 11 0.00024 41.5 3.3 38 442-479 425-464 (511)
11 PF00974 Rhabdo_glycop: Rhabdo 54.9 4 8.7E-05 44.1 0.0 39 442-480 456-496 (501)
12 PF14283 DUF4366: Domain of un 54.4 12 0.00027 36.8 3.3 26 445-470 163-188 (218)
13 PF05506 DUF756: Domain of unk 53.8 1.2E+02 0.0027 25.0 8.5 47 352-398 19-65 (89)
14 PF10633 NPCBM_assoc: NPCBM-as 53.5 56 0.0012 26.1 6.3 50 352-401 6-61 (78)
15 COG1470 Predicted membrane pro 50.9 35 0.00077 37.9 6.2 55 347-402 394-454 (513)
16 PF15102 TMEM154: TMEM154 prot 49.4 12 0.00025 35.6 2.1 9 473-481 98-106 (146)
17 PF14874 PapD-like: Flagellar- 49.1 1.3E+02 0.0028 24.6 7.9 48 352-399 21-72 (102)
18 TIGR02866 CoxB cytochrome c ox 46.2 12 0.00026 35.3 1.6 40 445-484 19-65 (201)
19 KOG4818 Lysosomal-associated m 45.6 13 0.00029 39.5 2.1 37 436-478 325-362 (362)
20 PF03896 TRAP_alpha: Transloco 44.8 1.9E+02 0.004 30.0 9.9 20 353-372 101-120 (285)
21 PF15102 TMEM154: TMEM154 prot 41.6 28 0.0006 33.2 3.3 28 458-486 76-103 (146)
22 PHA03282 envelope glycoprotein 41.4 36 0.00077 38.0 4.5 19 61-79 53-71 (540)
23 PF14610 DUF4448: Protein of u 41.4 15 0.00032 34.4 1.4 12 388-399 96-107 (189)
24 PF01299 Lamp: Lysosome-associ 40.3 17 0.00036 36.4 1.7 35 438-478 271-306 (306)
25 PF02480 Herpes_gE: Alphaherpe 39.9 9.6 0.00021 40.8 0.0 41 442-483 353-394 (439)
26 PF06365 CD34_antigen: CD34/Po 37.4 15 0.00032 36.3 0.8 23 435-457 99-121 (202)
27 PF06280 DUF1034: Fn3-like dom 37.3 1.7E+02 0.0038 24.8 7.2 68 353-420 10-110 (112)
28 PF11669 WBP-1: WW domain-bind 37.2 5.5 0.00012 34.9 -1.9 10 456-465 35-44 (102)
29 PF15099 PIRT: Phosphoinositid 36.8 15 0.00032 34.5 0.7 26 442-467 82-110 (129)
30 PHA03281 envelope glycoprotein 35.1 18 0.00038 40.9 1.0 45 444-488 562-609 (642)
31 TIGR01433 CyoA cytochrome o ub 31.5 53 0.0012 32.3 3.6 37 444-480 37-78 (226)
32 PF04478 Mid2: Mid2 like cell 31.2 36 0.00078 32.7 2.3 16 453-468 65-80 (154)
33 PF11770 GAPT: GRB2-binding ad 31.2 33 0.00071 33.2 2.0 19 442-460 13-32 (158)
34 PF09972 DUF2207: Predicted me 31.2 1.7E+02 0.0036 29.6 7.1 17 363-379 130-146 (511)
35 PF07010 Endomucin: Endomucin; 29.9 12 0.00026 38.3 -1.1 33 429-462 180-215 (259)
36 PF07610 DUF1573: Protein of u 29.6 1.3E+02 0.0028 22.5 4.6 42 357-398 2-45 (45)
37 PF05545 FixQ: Cbb3-type cytoc 29.2 9.6 0.00021 29.0 -1.5 28 435-462 3-30 (49)
38 PF07705 CARDB: CARDB; InterP 29.2 2.8E+02 0.0061 21.7 6.7 50 351-401 19-72 (101)
39 PF13908 Shisa: Wnt and FGF in 28.5 46 0.00099 30.7 2.4 41 437-478 80-120 (179)
40 PF12768 Rax2: Cortical protei 28.5 23 0.0005 35.9 0.6 40 444-483 236-280 (281)
41 PF05083 LST1: LST-1 protein; 28.0 14 0.00031 31.8 -0.8 30 459-488 15-53 (74)
42 PF12297 EVC2_like: Ellis van 27.5 13 0.00028 40.4 -1.4 26 442-467 65-90 (429)
43 PF07790 DUF1628: Protein of u 27.2 23 0.0005 28.8 0.2 43 439-481 3-45 (80)
44 KOG4764 Uncharacterized conser 26.7 25 0.00054 30.2 0.4 9 496-504 40-48 (70)
45 PF00635 Motile_Sperm: MSP (Ma 26.5 2.1E+02 0.0046 23.3 5.7 50 351-400 18-69 (109)
46 KOG4222 Axon guidance receptor 26.4 2.3E+02 0.005 34.9 8.0 112 425-541 855-980 (1281)
47 COG5268 TrbD Type IV secretory 26.1 31 0.00067 30.9 0.9 23 12-34 54-76 (93)
48 PF06030 DUF916: Bacterial pro 25.9 1.2E+02 0.0025 27.3 4.4 43 345-387 21-63 (121)
49 PHA03286 envelope glycoprotein 24.5 24 0.00053 38.9 -0.1 39 449-487 400-441 (492)
50 PF15065 NCU-G1: Lysosomal tra 23.3 57 0.0012 34.5 2.3 26 442-467 322-348 (350)
51 PF13980 UPF0370: Uncharacteri 21.5 19 0.00042 30.3 -1.2 54 445-507 6-59 (63)
52 PF10989 DUF2808: Protein of u 20.8 1.9E+02 0.0042 26.2 4.9 25 355-379 30-54 (146)
53 PF14316 DUF4381: Domain of un 20.5 13 0.00028 33.4 -2.6 31 444-476 21-51 (146)
No 1
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=88.78 E-value=0.067 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=9.0
Q ss_pred HHHHHHHhhhceeEEEeeccccc
Q 009107 447 FLILSVLIFGVTWACCKCRKRRW 469 (543)
Q Consensus 447 fLv~TvVLiGgvWaCCkfRKrR~ 469 (543)
|+||+++||..+.+||+++|||+
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333334444444443
No 2
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=88.70 E-value=0.13 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHhhhceeEEEeecccccC
Q 009107 448 LILSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 448 Lv~TvVLiGgvWaCCkfRKrR~q 470 (543)
+|+++|||+++.|||.+||||.-
T Consensus 154 VI~~iLLIA~iIa~icyrrkR~G 176 (290)
T PF05454_consen 154 VIAAILLIAGIIACICYRRKRKG 176 (290)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhcc
Confidence 44555666777788888877653
No 3
>PHA03283 envelope glycoprotein E; Provisional
Probab=88.68 E-value=0.82 Score=50.30 Aligned_cols=72 Identities=24% Similarity=0.393 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHhhhceeEEEeecccccCCCCCceeeec------CCCCccCCccc-c-cCCCcCCCCCCCCCcccCCCC
Q 009107 442 INGAYFLILSVLIFGVTWACCKCRKRRWNDGVPYQELEM------GLPESVSAMNV-E-TAEGWDEGWDDDWDENNAVKS 513 (543)
Q Consensus 442 I~GAYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQELEM------eLP~S~ga~ev-E-TaDGWDdgWDDDWDDEEApKS 513 (543)
+.|+--++.++|+..++|+|+.||++++. +|.=|-= .||.-..-..+ | -+.-=||..|+|=|||-++.+
T Consensus 403 ~~~~~~~~~~~~~~l~vw~c~~~r~~~~~---~y~ilnpf~~vytslptn~~~~~~f~~~~~~~ddsf~~~~de~~~~~~ 479 (542)
T PHA03283 403 LLAIICTCAALLVALVVWGCILYRRSNRK---PYEVLNPFETVYTSVPSNDPEVLVFERLASDSDDSFDSSSDEELEPPP 479 (542)
T ss_pred HHHHHHHHHHHHHHHhhhheeeehhhcCC---cccccCCCccceeccCCCCCcccceeecccCccccccccccccccCCC
Confidence 33444444566777789999998777665 4443332 24433332111 1 122235677777666666655
Q ss_pred CCC
Q 009107 514 PGA 516 (543)
Q Consensus 514 PS~ 516 (543)
|..
T Consensus 480 ~~~ 482 (542)
T PHA03283 480 PPG 482 (542)
T ss_pred CCC
Confidence 553
No 4
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=80.66 E-value=0.62 Score=40.23 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=23.2
Q ss_pred HHHHHHhhhceeEEEeecccccC-CCCCc
Q 009107 448 LILSVLIFGVTWACCKCRKRRWN-DGVPY 475 (543)
Q Consensus 448 Lv~TvVLiGgvWaCCkfRKrR~q-dGvpY 475 (543)
+++|+||+++++.|-++|||++| ++--|
T Consensus 44 ~vlTLLIv~~vy~car~r~r~~~~~~kvY 72 (79)
T PF07213_consen 44 AVLTLLIVLVVYYCARPRRRPTQEDDKVY 72 (79)
T ss_pred HHHHHHHHHHHHhhcccccCCcccCCEEE
Confidence 56999999999999999999888 54333
No 5
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=76.45 E-value=1.1 Score=46.63 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhhhceeEEEeecccccC
Q 009107 444 GAYFLILSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 444 GAYfLv~TvVLiGgvWaCCkfRKrR~q 470 (543)
-++.+++++|+++++|.|++||||+.+
T Consensus 303 v~~~~vli~vl~~~~~~~~~~~~~~~~ 329 (361)
T PF12259_consen 303 VCGAIVLIIVLISLAWLYRTFRRRQLR 329 (361)
T ss_pred hhHHHHHHHHHHHHHhheeehHHHHhh
Confidence 344456667788999999999998765
No 6
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=71.89 E-value=2.2 Score=39.25 Aligned_cols=23 Identities=26% Similarity=0.779 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHhhhceeEEEee
Q 009107 442 INGAYFLILSVLIFGVTWACCKC 464 (543)
Q Consensus 442 I~GAYfLv~TvVLiGgvWaCCkf 464 (543)
|.|+.++|++||++-+++.||++
T Consensus 81 ivgvi~~Vi~Iv~~Iv~~~Cc~c 103 (179)
T PF13908_consen 81 IVGVICGVIAIVVLIVCFCCCCC 103 (179)
T ss_pred eeehhhHHHHHHHhHhhheeccc
Confidence 33454444444444455555443
No 7
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=69.37 E-value=1.5 Score=46.62 Aligned_cols=20 Identities=35% Similarity=0.924 Sum_probs=0.0
Q ss_pred HHHhhhceeEEEeecccccC
Q 009107 451 SVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 451 TvVLiGgvWaCCkfRKrR~q 470 (543)
++||+.++|+|+++||||++
T Consensus 365 ivVv~viv~vc~~~rrrR~~ 384 (439)
T PF02480_consen 365 IVVVGVIVWVCLRCRRRRRQ 384 (439)
T ss_dssp --------------------
T ss_pred HHHHHHHhheeeeehhcccc
Confidence 34444555555555555554
No 8
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=66.86 E-value=2.4 Score=42.67 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=16.8
Q ss_pred chhhHHHHHHHHhhhceeEEE
Q 009107 442 INGAYFLILSVLIFGVTWACC 462 (543)
Q Consensus 442 I~GAYfLv~TvVLiGgvWaCC 462 (543)
+.|..+|-|.+|++++...-|
T Consensus 58 VTg~sllsli~VtvaalYsSC 78 (235)
T PF11359_consen 58 VTGFSLLSLIVVTVAALYSSC 78 (235)
T ss_pred ehhHHHHHHHHHHHHHHHHHH
Confidence 568888888888888887655
No 9
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=66.07 E-value=28 Score=29.75 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=31.9
Q ss_pred cceEEEEEeCCCceEEEEEEcC--ccccC--CCceeeecccceeEEEEEEe
Q 009107 353 GELTILVQNEGEKTLIVTITIP--TAVEN--PLKQLKISKHQTQKINISLS 399 (543)
Q Consensus 353 ~~LsLLVQNkGe~~LkVtItAP--d~V~~--~l~eL~L~KhqskKVnISis 399 (543)
-.|.|-+.|+.+.+..++|++. ..+.+ ....|+|..++..++.|.+.
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence 3688999999999888888655 44444 44788898899988888887
No 10
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=55.40 E-value=11 Score=41.55 Aligned_cols=38 Identities=34% Similarity=0.520 Sum_probs=24.8
Q ss_pred chhhHHHHHHHH-hhhceeEEEeecc-cccCCCCCceeee
Q 009107 442 INGAYFLILSVL-IFGVTWACCKCRK-RRWNDGVPYQELE 479 (543)
Q Consensus 442 I~GAYfLv~TvV-LiGgvWaCCkfRK-rR~qdGvpYQELE 479 (543)
+||.||++++++ ++++++.|+++-+ .|++.-.+=|++.
T Consensus 425 vY~~yf~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
T TIGR00806 425 IYSVYFLVLSIICFFGAGLDGLRYCKRGTHQPLAPAQELR 464 (511)
T ss_pred ehhhHHHHHHHHHHHHHHHHHhhhhcccccCCCCcccccc
Confidence 778999988766 4555777877543 3444445666665
No 11
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=54.92 E-value=4 Score=44.06 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHhhhceeEEEeeccccc-C-CCCCceeeec
Q 009107 442 INGAYFLILSVLIFGVTWACCKCRKRRW-N-DGVPYQELEM 480 (543)
Q Consensus 442 I~GAYfLv~TvVLiGgvWaCCkfRKrR~-q-dGvpYQELEM 480 (543)
..+++.+++.+||+.++..||+|||+++ + .-.-|...||
T Consensus 456 ~~~~~~vi~~illi~l~~cc~~~~r~~~~~~~~~i~~~~~~ 496 (501)
T PF00974_consen 456 SIIAIAVILLILLILLIRCCCRCRRRRRPKRKRGIYESKVS 496 (501)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccCCcccccccc
Confidence 3355555555666655545555664433 2 3355666666
No 12
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=54.43 E-value=12 Score=36.81 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhhceeEEEeecccccC
Q 009107 445 AYFLILSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 445 AYfLv~TvVLiGgvWaCCkfRKrR~q 470 (543)
+.+|++++|+.||++++.||+|.+.+
T Consensus 163 ll~lllv~l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 163 LLLLLLVALIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HHHHHHHHHhhcceEEEEEEeccccc
Confidence 33344455566667777778887766
No 13
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=53.84 E-value=1.2e+02 Score=24.99 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=33.4
Q ss_pred CcceEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEE
Q 009107 352 SGELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISL 398 (543)
Q Consensus 352 S~~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISi 398 (543)
...+.|.+.|.|...+.|+|..-.+-......+.|.-+++..+.+..
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEEECCCCEEEEEEee
Confidence 34899999999999999999875454344556666666665555544
No 14
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=53.49 E-value=56 Score=26.12 Aligned_cols=50 Identities=10% Similarity=0.298 Sum_probs=30.5
Q ss_pred CcceEEEEEeCCCc---eEEEEEEcCcccc--CCCcee-eecccceeEEEEEEecC
Q 009107 352 SGELTILVQNEGEK---TLIVTITIPTAVE--NPLKQL-KISKHQTQKINISLSAR 401 (543)
Q Consensus 352 S~~LsLLVQNkGe~---~LkVtItAPd~V~--~~l~eL-~L~KhqskKVnISis~~ 401 (543)
...+.|-|.|.|.. .+.|.+..|+.|. .....+ .|.-+++..+.+.++.+
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence 45688999999975 4788889998887 333333 46788888888888743
No 15
>COG1470 Predicted membrane protein [Function unknown]
Probab=50.94 E-value=35 Score=37.90 Aligned_cols=55 Identities=13% Similarity=0.296 Sum_probs=35.8
Q ss_pred ccCCCCcceEEEEEeCCCc---eEEEEEEcCccccCCCceeee---cccceeEEEEEEecCC
Q 009107 347 NFDTGSGELTILVQNEGEK---TLIVTITIPTAVENPLKQLKI---SKHQTQKINISLSARK 402 (543)
Q Consensus 347 Vpgn~S~~LsLLVQNkGe~---~LkVtItAPd~V~~~l~eL~L---~KhqskKVnISis~~n 402 (543)
.+|.+ ...-+-|-|.|.- .++++|..|..|+..-.+-++ .-+..+.|+++++.+.
T Consensus 394 taGee-~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~ 454 (513)
T COG1470 394 TAGEE-KTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPE 454 (513)
T ss_pred cCCcc-ceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCC
Confidence 44533 5677788889965 456888888666554444333 4566778888877544
No 16
>PF15102 TMEM154: TMEM154 protein family
Probab=49.43 E-value=12 Score=35.64 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=5.5
Q ss_pred CCceeeecC
Q 009107 473 VPYQELEMG 481 (543)
Q Consensus 473 vpYQELEMe 481 (543)
..||..|++
T Consensus 98 ~~~qt~e~~ 106 (146)
T PF15102_consen 98 SALQTYELG 106 (146)
T ss_pred ccccccccC
Confidence 366766763
No 17
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=49.14 E-value=1.3e+02 Score=24.62 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=36.3
Q ss_pred CcceEEEEEeCCCceEEEEEEcCc----cccCCCceeeecccceeEEEEEEe
Q 009107 352 SGELTILVQNEGEKTLIVTITIPT----AVENPLKQLKISKHQTQKINISLS 399 (543)
Q Consensus 352 S~~LsLLVQNkGe~~LkVtItAPd----~V~~~l~eL~L~KhqskKVnISis 399 (543)
.+...|.+.|.|..++.+.|..|. .+......=.|.-+.+..|+|.+.
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence 456889999999999999997774 334444444566788888888888
No 18
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=46.18 E-value=12 Score=35.35 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=23.7
Q ss_pred hHHHHHHHHhhhceeEEEeecccccCCCCCc----eeeec---CCCC
Q 009107 445 AYFLILSVLIFGVTWACCKCRKRRWNDGVPY----QELEM---GLPE 484 (543)
Q Consensus 445 AYfLv~TvVLiGgvWaCCkfRKrR~qdGvpY----QELEM---eLP~ 484 (543)
+-++|+++|....+|++++||+++++.-.+| +.||+ .+|.
T Consensus 19 i~~iI~v~V~~~l~~~~~k~r~~~~~~~~~~~~~~~~lEi~wtiiP~ 65 (201)
T TIGR02866 19 VATTISLLVAALLAYVVWKFRRKGDEEKPSKIHGNRALEYTWTVIPL 65 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccCCCccccCCceEEEEeehHhH
Confidence 4445566666677788888887533211233 46887 3663
No 19
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=45.64 E-value=13 Score=39.54 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=22.4
Q ss_pred ceeccc-chhhHHHHHHHHhhhceeEEEeecccccCCCCCceee
Q 009107 436 DKILTP-INGAYFLILSVLIFGVTWACCKCRKRRWNDGVPYQEL 478 (543)
Q Consensus 436 ~~ilTP-I~GAYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQEL 478 (543)
..++.| |.|+-+..+.++++.+ .||. ||||++ -||.|
T Consensus 325 ~siv~PivVg~~l~gl~~~vlia--ylIg-rr~~~~---gYq~i 362 (362)
T KOG4818|consen 325 LNIVLPIAVGAILAGLVLVVLIA--YLIG-RRRSHS---GYQTI 362 (362)
T ss_pred cceecchHHHHHHHHHHHHHHHH--hhee-heeccc---ccccC
Confidence 457788 6777766655555544 3555 555555 38764
No 20
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=44.83 E-value=1.9e+02 Score=29.97 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.0
Q ss_pred cceEEEEEeCCCceEEEEEE
Q 009107 353 GELTILVQNEGEKTLIVTIT 372 (543)
Q Consensus 353 ~~LsLLVQNkGe~~LkVtIt 372 (543)
....|=+.|+|..++.|...
T Consensus 101 ~~~LvgftN~g~~~~~V~~i 120 (285)
T PF03896_consen 101 VKFLVGFTNKGSEPFTVESI 120 (285)
T ss_pred EEEEEEEEeCCCCCEEEEEE
Confidence 46677789999999998763
No 21
>PF15102 TMEM154: TMEM154 protein family
Probab=41.62 E-value=28 Score=33.18 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=14.8
Q ss_pred eeEEEeecccccCCCCCceeeecCCCCcc
Q 009107 458 TWACCKCRKRRWNDGVPYQELEMGLPESV 486 (543)
Q Consensus 458 vWaCCkfRKrR~qdGvpYQELEMeLP~S~ 486 (543)
++.-+.+||||.. .-+||+..=+.+-+.
T Consensus 76 V~lv~~~kRkr~K-~~~ss~gsq~~~qt~ 103 (146)
T PF15102_consen 76 VCLVIYYKRKRTK-QEPSSQGSQSALQTY 103 (146)
T ss_pred HHheeEEeecccC-CCCcccccccccccc
Confidence 3444444555554 467777666544433
No 22
>PHA03282 envelope glycoprotein E; Provisional
Probab=41.39 E-value=36 Score=37.97 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=14.9
Q ss_pred CcCCCCCCCCCCCCCCCCc
Q 009107 61 NVQPSNNSAPLDPKPISKT 79 (543)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~ 79 (543)
.+.|-++-.||-|.++|..
T Consensus 53 ~~~p~~~C~p~~PswVsl~ 71 (540)
T PHA03282 53 AFEPMDACGPLRPSWVSLR 71 (540)
T ss_pred eeeecccCCCCCCcceeec
Confidence 4678888899999888753
No 23
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=41.37 E-value=15 Score=34.37 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=6.2
Q ss_pred ccceeEEEEEEe
Q 009107 388 KHQTQKINISLS 399 (543)
Q Consensus 388 KhqskKVnISis 399 (543)
.....+++|++.
T Consensus 96 ~~~~~~~~itl~ 107 (189)
T PF14610_consen 96 GEKYERNNITLQ 107 (189)
T ss_pred CCccceEEEEEE
Confidence 343434666665
No 24
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=40.27 E-value=17 Score=36.35 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=17.4
Q ss_pred ecccc-hhhHHHHHHHHhhhceeEEEeecccccCCCCCceee
Q 009107 438 ILTPI-NGAYFLILSVLIFGVTWACCKCRKRRWNDGVPYQEL 478 (543)
Q Consensus 438 ilTPI-~GAYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQEL 478 (543)
++-|| .|+-+.+++||+ .-|||..|||++. -||.+
T Consensus 271 ~~vPIaVG~~La~lvliv---LiaYli~Rrr~~~---gYq~~ 306 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIV---LIAYLIGRRRSRA---GYQSI 306 (306)
T ss_pred chHHHHHHHHHHHHHHHH---HHhheeEeccccc---ccccC
Confidence 46676 566543332222 2245555555444 58864
No 25
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=39.94 E-value=9.6 Score=40.81 Aligned_cols=41 Identities=22% Similarity=0.062 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHhhhceeEEEeecccccCCCCCce-eeecCCC
Q 009107 442 INGAYFLILSVLIFGVTWACCKCRKRRWNDGVPYQ-ELEMGLP 483 (543)
Q Consensus 442 I~GAYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQ-ELEMeLP 483 (543)
+.+++++.++++|+.++-+||.+.++|++ --.|+ .+++.-|
T Consensus 353 ~~l~vVlgvavlivVv~viv~vc~~~rrr-R~~~~~~~~~~~~ 394 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIVWVCLRCRRR-RRQRDKILNPFSP 394 (439)
T ss_dssp -------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHhheeeeehhc-ccccccccCcCCC
Confidence 33444444555555555556667777777 67777 6666433
No 26
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=37.41 E-value=15 Score=36.31 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=13.6
Q ss_pred cceecccchhhHHHHHHHHhhhc
Q 009107 435 YDKILTPINGAYFLILSVLIFGV 457 (543)
Q Consensus 435 Y~~ilTPI~GAYfLv~TvVLiGg 457 (543)
|..++.-+..+.||+++++++++
T Consensus 99 ~~~lI~lv~~g~~lLla~~~~~~ 121 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILLGAG 121 (202)
T ss_pred ceEEEehHHhhHHHHHHHHHHHH
Confidence 45666666666666655555543
No 27
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=37.25 E-value=1.7e+02 Score=24.77 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=39.1
Q ss_pred cceEEEEEeCCCceEEEEEEcC----c-------------------cccCCCceeeecccceeEEEEEEecCC-------
Q 009107 353 GELTILVQNEGEKTLIVTITIP----T-------------------AVENPLKQLKISKHQTQKINISLSARK------- 402 (543)
Q Consensus 353 ~~LsLLVQNkGe~~LkVtItAP----d-------------------~V~~~l~eL~L~KhqskKVnISis~~n------- 402 (543)
..+.|.++|.|...++.+|..- + .+......|.|.-++++.|+|++..+.
T Consensus 10 ~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~~ 89 (112)
T PF06280_consen 10 FSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLDASNG 89 (112)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT-
T ss_pred eEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCCcccC
Confidence 5566777777777666554221 0 234455677888888888888888522
Q ss_pred ---CceEEEEeccCceEEecC
Q 009107 403 ---NSKLVLNAGNGECVLHMG 420 (543)
Q Consensus 403 ---s~~IVLkAGkGdCvLhi~ 420 (543)
++-|.|+...+.+.|+|+
T Consensus 90 ~~~eG~I~~~~~~~~~~lsIP 110 (112)
T PF06280_consen 90 PFYEGFITFKSSDGEPDLSIP 110 (112)
T ss_dssp EEEEEEEEEESSTTSEEEEEE
T ss_pred CEEEEEEEEEcCCCCEEEEee
Confidence 244777777776677653
No 28
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=37.19 E-value=5.5 Score=34.94 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=3.9
Q ss_pred hceeEEEeec
Q 009107 456 GVTWACCKCR 465 (543)
Q Consensus 456 GgvWaCCkfR 465 (543)
+..++|..+|
T Consensus 35 ~c~c~~~~~r 44 (102)
T PF11669_consen 35 SCCCACRHRR 44 (102)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 29
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=36.83 E-value=15 Score=34.53 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHhhh---ceeEEEeeccc
Q 009107 442 INGAYFLILSVLIFG---VTWACCKCRKR 467 (543)
Q Consensus 442 I~GAYfLv~TvVLiG---gvWaCCkfRKr 467 (543)
+.|..||-+-|++++ .+|.++.-||+
T Consensus 82 ~~G~vlLs~GLmlL~~~alcW~~~~rkK~ 110 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLACSALCWKPIIRKKK 110 (129)
T ss_pred hehHHHHHHHHHHHHhhhheehhhhHhHH
Confidence 446666664444433 45555544444
No 30
>PHA03281 envelope glycoprotein E; Provisional
Probab=35.06 E-value=18 Score=40.88 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhhhceeEEEeecccccC-CCCCceeee--cCCCCccCC
Q 009107 444 GAYFLILSVLIFGVTWACCKCRKRRWN-DGVPYQELE--MGLPESVSA 488 (543)
Q Consensus 444 GAYfLv~TvVLiGgvWaCCkfRKrR~q-dGvpYQELE--MeLP~S~ga 488 (543)
|...+++++|+++++|.-.+||+|+++ +.-+||+-- |+||+-.-.
T Consensus 562 ~~a~~~ll~l~~~~~c~~~~~~~~~~~~~~~~~~~s~~Y~~lP~~d~e 609 (642)
T PHA03281 562 GFAALALLCLAIALICTAKKFGHKAYRSDKAAYGQSMYYAGLPVDDFE 609 (642)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeeccccccccccccccCCCcccc
Confidence 444556666677777766788888665 777888753 589986543
No 31
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=31.45 E-value=53 Score=32.27 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=22.1
Q ss_pred hhHHHHHHHHhhhceeEEEeecccccCCC--C---Cceeeec
Q 009107 444 GAYFLILSVLIFGVTWACCKCRKRRWNDG--V---PYQELEM 480 (543)
Q Consensus 444 GAYfLv~TvVLiGgvWaCCkfRKrR~qdG--v---pYQELEM 480 (543)
++.++|+++|.+..+|...+|||++.... . .-+.||+
T Consensus 37 ~~~~ii~v~v~~~~~~~~~r~r~~~~~~~~~p~~~~~~~lE~ 78 (226)
T TIGR01433 37 GLMLLVVIPVILMTLFFAWKYRATNKDADYSPNWHHSTKIEI 78 (226)
T ss_pred HHHHHHHHHHHHHHheeeEEEeccCCcCCCCCcccCCceeeh
Confidence 34444555555556888888988765421 1 2245885
No 32
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=31.23 E-value=36 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=9.0
Q ss_pred HhhhceeEEEeecccc
Q 009107 453 LIFGVTWACCKCRKRR 468 (543)
Q Consensus 453 VLiGgvWaCCkfRKrR 468 (543)
+|++.+|.||.-|||.
T Consensus 65 ~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 65 GILALVFIFCIRRKKT 80 (154)
T ss_pred HHHHhheeEEEecccC
Confidence 4455567676555543
No 33
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=31.20 E-value=33 Score=33.22 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=8.7
Q ss_pred chhhHHHHHHHH-hhhceeE
Q 009107 442 INGAYFLILSVL-IFGVTWA 460 (543)
Q Consensus 442 I~GAYfLv~TvV-LiGgvWa 460 (543)
..|++|||+.|| .||.+|.
T Consensus 13 ~igi~Ll~lLl~cgiGcvwh 32 (158)
T PF11770_consen 13 SIGISLLLLLLLCGIGCVWH 32 (158)
T ss_pred HHHHHHHHHHHHHhcceEEE
Confidence 346665553332 2344444
No 34
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=31.19 E-value=1.7e+02 Score=29.63 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=11.7
Q ss_pred CCceEEEEEEcCccccC
Q 009107 363 GEKTLIVTITIPTAVEN 379 (543)
Q Consensus 363 Ge~~LkVtItAPd~V~~ 379 (543)
.-+.++|+|..|..+..
T Consensus 130 ~i~~v~v~i~~P~~~~~ 146 (511)
T PF09972_consen 130 PIENVTVTITLPKPVDN 146 (511)
T ss_pred ccceEEEEEECCCCCcc
Confidence 44578899999955433
No 35
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=29.90 E-value=12 Score=38.27 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=20.9
Q ss_pred cccccccceecccchhhHHHHHHHH---hhhceeEEE
Q 009107 429 FIYLPSYDKILTPINGAYFLILSVL---IFGVTWACC 462 (543)
Q Consensus 429 f~~~pSY~~ilTPI~GAYfLv~TvV---LiGgvWaCC 462 (543)
+.-.|+|+.++-|+..|. +|++++ |+|..-+|.
T Consensus 180 ~stspS~S~vilpvvIal-iVitl~vf~LvgLyr~C~ 215 (259)
T PF07010_consen 180 SSTSPSYSSVILPVVIAL-IVITLSVFTLVGLYRMCW 215 (259)
T ss_pred ccCCccccchhHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 344689999999987655 444444 445544554
No 36
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=29.57 E-value=1.3e+02 Score=22.50 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=28.8
Q ss_pred EEEEeCCCceEEEE-EEcC-ccccCCCceeeecccceeEEEEEE
Q 009107 357 ILVQNEGEKTLIVT-ITIP-TAVENPLKQLKISKHQTQKINISL 398 (543)
Q Consensus 357 LLVQNkGe~~LkVt-ItAP-d~V~~~l~eL~L~KhqskKVnISi 398 (543)
+-+.|.|+.+|.+. |.++ .-+......-.|.-+++.+|+|+|
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCcceECCCCEEEEEEEC
Confidence 56899999999885 4444 334444455556688888888764
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=29.23 E-value=9.6 Score=28.98 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=15.1
Q ss_pred cceecccchhhHHHHHHHHhhhceeEEE
Q 009107 435 YDKILTPINGAYFLILSVLIFGVTWACC 462 (543)
Q Consensus 435 Y~~ilTPI~GAYfLv~TvVLiGgvWaCC 462 (543)
|..+..=+.+..++++.++.+|.+|-.+
T Consensus 3 ~~~~~~~~~~~~~v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 3 YETLQGFARSIGTVLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456666666666666544433
No 38
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=29.21 E-value=2.8e+02 Score=21.70 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=31.7
Q ss_pred CCcceEEEEEeCCCc---eEEEEEEcCccccCCCcee-eecccceeEEEEEEecC
Q 009107 351 GSGELTILVQNEGEK---TLIVTITIPTAVENPLKQL-KISKHQTQKINISLSAR 401 (543)
Q Consensus 351 ~S~~LsLLVQNkGe~---~LkVtItAPd~V~~~l~eL-~L~KhqskKVnISis~~ 401 (543)
....+.+.|+|.|.. .+.|.+...... .....| .|..+++..|.+.+...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~-~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLDGNS-VSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEETTEE-EEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEECCce-eccEEECCcCCCcEEEEEEEEEeC
Confidence 456788999999986 466666555332 233344 66788888888888753
No 39
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=28.53 E-value=46 Score=30.74 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=24.5
Q ss_pred eecccchhhHHHHHHHHhhhceeEEEeecccccCCCCCceee
Q 009107 437 KILTPINGAYFLILSVLIFGVTWACCKCRKRRWNDGVPYQEL 478 (543)
Q Consensus 437 ~ilTPI~GAYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQEL 478 (543)
.++.-|.|+.|+ +++|++..-+-||+-++.|++.....+.+
T Consensus 80 iivgvi~~Vi~I-v~~Iv~~~Cc~c~~~K~~~~~~~~~~~~~ 120 (179)
T PF13908_consen 80 IIVGVICGVIAI-VVLIVCFCCCCCCLYKKCRSQRPNRSRAL 120 (179)
T ss_pred eeeehhhHHHHH-HHhHhhheeccccccccccCccccccccc
Confidence 344566666655 55555567677898886555433444443
No 40
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.46 E-value=23 Score=35.88 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhhhceeEEEeecccccC---CCCCceeeec--CCC
Q 009107 444 GAYFLILSVLIFGVTWACCKCRKRRWN---DGVPYQELEM--GLP 483 (543)
Q Consensus 444 GAYfLv~TvVLiGgvWaCCkfRKrR~q---dGvpYQELEM--eLP 483 (543)
-|-=++|.++|+|++++++++||.... -..+|.|-|| .+|
T Consensus 236 iALG~v~ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~~~~~~vp 280 (281)
T PF12768_consen 236 IALGTVFLLVLIGIILAYIRRRRQGYVPAPTSPRIDEDEMMQRVP 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccccCcccccccCC
Confidence 344456777888888877644433222 1247999999 466
No 41
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=28.03 E-value=14 Score=31.83 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=18.2
Q ss_pred eEEEeecccccC-----CCCCceeeecC----CCCccCC
Q 009107 459 WACCKCRKRRWN-----DGVPYQELEMG----LPESVSA 488 (543)
Q Consensus 459 WaCCkfRKrR~q-----dGvpYQELEMe----LP~S~ga 488 (543)
|.|..-||.++- -+.--|||-|+ ||++...
T Consensus 15 clC~lsrRvkrLErs~~~~~~eQE~hyasLqrLPv~~se 53 (74)
T PF05083_consen 15 CLCRLSRRVKRLERSWEQLSSEQELHYASLQRLPVPSSE 53 (74)
T ss_pred HHHHHHhhhhhcccchhccccccchHHHHHHhCCCCCCC
Confidence 666665655421 22234888884 8888763
No 42
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=27.48 E-value=13 Score=40.36 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHhhhceeEEEeeccc
Q 009107 442 INGAYFLILSVLIFGVTWACCKCRKR 467 (543)
Q Consensus 442 I~GAYfLv~TvVLiGgvWaCCkfRKr 467 (543)
+++|-|+|+.+|-+..+|+||.|-.|
T Consensus 65 lhaagFfvaflvslVL~~l~~f~l~r 90 (429)
T PF12297_consen 65 LHAAGFFVAFLVSLVLTWLCFFLLAR 90 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999986554
No 43
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=27.17 E-value=23 Score=28.78 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=30.5
Q ss_pred cccchhhHHHHHHHHhhhceeEEEeecccccCCCCCceeeecC
Q 009107 439 LTPINGAYFLILSVLIFGVTWACCKCRKRRWNDGVPYQELEMG 481 (543)
Q Consensus 439 lTPI~GAYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQELEMe 481 (543)
++|+.|+-+|++..|+++++-++..|---......|+-.+++.
T Consensus 3 vS~viGviLliaitVilaavv~~~~~~~~~~~~~~P~~~~~~~ 45 (80)
T PF07790_consen 3 VSPVIGVILLIAITVILAAVVGAFVFGLDSSPESPPQASISVD 45 (80)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEEEEEEE
Confidence 5799999999988888888877776665222245666666554
No 44
>KOG4764 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.68 E-value=25 Score=30.20 Aligned_cols=9 Identities=56% Similarity=1.664 Sum_probs=4.9
Q ss_pred CcCCCCCCC
Q 009107 496 GWDEGWDDD 504 (543)
Q Consensus 496 GWDdgWDDD 504 (543)
-|.++||||
T Consensus 40 vWEdnWDDd 48 (70)
T KOG4764|consen 40 VWEDNWDDD 48 (70)
T ss_pred hhhhcCCcc
Confidence 566666443
No 45
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=26.54 E-value=2.1e+02 Score=23.32 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=35.5
Q ss_pred CCcceEEEEEeCCCceEEEEEEcC--ccccCCCceeeecccceeEEEEEEec
Q 009107 351 GSGELTILVQNEGEKTLIVTITIP--TAVENPLKQLKISKHQTQKINISLSA 400 (543)
Q Consensus 351 ~S~~LsLLVQNkGe~~LkVtItAP--d~V~~~l~eL~L~KhqskKVnISis~ 400 (543)
......|.+.|.+...+-.+|++. +...+.+..=.|.-+++..|.|++..
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~ 69 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQP 69 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-S
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEe
Confidence 345678899999999998888554 44556666667788899999998774
No 46
>KOG4222 consensus Axon guidance receptor Dscam [Signal transduction mechanisms]
Probab=26.38 E-value=2.3e+02 Score=34.91 Aligned_cols=112 Identities=16% Similarity=0.069 Sum_probs=52.4
Q ss_pred cccccccccccceecccchhhHHHHHHHHhhhcee-EEEeecccccC-------CCCCceeeecCCCCccCCc-ccccCC
Q 009107 425 EEKIFIYLPSYDKILTPINGAYFLILSVLIFGVTW-ACCKCRKRRWN-------DGVPYQELEMGLPESVSAM-NVETAE 495 (543)
Q Consensus 425 d~n~f~~~pSY~~ilTPI~GAYfLv~TvVLiGgvW-aCCkfRKrR~q-------dGvpYQELEMeLP~S~ga~-evETaD 495 (543)
+.+.-...++|+.+--|-..|-.-+..+||+++.- +||.|||+++. ..++-|.|=|.++++.+.. --+
T Consensus 855 ~~ns~~~~~s~~v~~qp~f~a~v~~a~~ii~~v~s~~~~y~~rk~~~~~~~~t~~~s~~d~~f~s~n~~~~~~~~~~--- 931 (1281)
T KOG4222|consen 855 DRNSETEQISVDVVNQPAFIAGVHRACLIIVMVFSIIWLYWRRKEPLSGKDLTAGLSRLDNLFTSLNVNQGKGYLPC--- 931 (1281)
T ss_pred ccchhhhhheeeeecCcchheeeeeeeeeeeeeeeeeeeeecccccccccccccccccCCcceeccccccccccccc---
Confidence 33333444466666555332222233334444433 78888888665 3455667777777433321 111
Q ss_pred CcCCCC---CCCCCcccCC-C-CCCCCCccccCcCcccCCCCCCCCCccCC
Q 009107 496 GWDEGW---DDDWDENNAV-K-SPGASRIGSISANGLTSRSPNRDGWEHDW 541 (543)
Q Consensus 496 GWDdgW---DDDWDDEEAp-K-SPS~~~T~SlSSNGLASRRSsKDGWk~DW 541 (543)
|-.+| +-|=+++.|- + -|--+.+..+++ =..-|=..-+||.-+|
T Consensus 932 -~~~~W~~~~~~~~~~~ag~~l~~~vP~s~~~~n-~~~~~~~~s~~~n~~s 980 (1281)
T KOG4222|consen 932 -YSPGWRTARLDHQNERAGQGLLPPVPNSQDNHN-DISERGLGSIGWNTDS 980 (1281)
T ss_pred -ccccccccccccccccccCcccCCCCCcccccc-cccccccccccccccc
Confidence 22333 1222233331 1 122234445555 2222336668888877
No 47
>COG5268 TrbD Type IV secretory pathway, TrbD component [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.14 E-value=31 Score=30.92 Aligned_cols=23 Identities=48% Similarity=0.511 Sum_probs=19.2
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCC
Q 009107 12 LFSISIADVAHATFRYLAAAPPQ 34 (543)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~ 34 (543)
+|.+.|==|||++||++|.+-|+
T Consensus 54 ~fGl~iW~va~a~~r~~Ak~DP~ 76 (93)
T COG5268 54 GFGLGIWFVAHALARWLAKADPL 76 (93)
T ss_pred hcchHHHHHHHHHHHHHhhcChH
Confidence 35666778999999999999886
No 48
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=25.91 E-value=1.2e+02 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=33.0
Q ss_pred eeccCCCCcceEEEEEeCCCceEEEEEEcCccccCCCceeeec
Q 009107 345 IQNFDTGSGELTILVQNEGEKTLIVTITIPTAVENPLKQLKIS 387 (543)
Q Consensus 345 LqVpgn~S~~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~ 387 (543)
|++.-.....+.|.|+|....+++|.|.+-+.....-..|...
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~ 63 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYS 63 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEEC
Confidence 5555556778999999999999999997776666666666554
No 49
>PHA03286 envelope glycoprotein E; Provisional
Probab=24.49 E-value=24 Score=38.90 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=22.9
Q ss_pred HHHHHhhhceeEEEeecccccC-CCCCceee--ecCCCCccC
Q 009107 449 ILSVLIFGVTWACCKCRKRRWN-DGVPYQEL--EMGLPESVS 487 (543)
Q Consensus 449 v~TvVLiGgvWaCCkfRKrR~q-dGvpYQEL--EMeLP~S~g 487 (543)
++++|++++.|+-|.|||||++ -.-.+|+- -|.||--.-
T Consensus 400 ~~~~~~~~~~~~~~~~~r~~~~r~~~~~~~~~ky~~lp~n~~ 441 (492)
T PHA03286 400 AILVVLLFALCIAGLYRRRRRHRTNGYFQAYPKYMSLPSNDE 441 (492)
T ss_pred HHHHHHHHHHHhHhHhhhhhhhhcccccccCcccccCCCccc
Confidence 3566777777888888877665 11122221 277885443
No 50
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=23.29 E-value=57 Score=34.51 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=14.1
Q ss_pred chhhHHHHHHH-HhhhceeEEEeeccc
Q 009107 442 INGAYFLILSV-LIFGVTWACCKCRKR 467 (543)
Q Consensus 442 I~GAYfLv~Tv-VLiGgvWaCCkfRKr 467 (543)
|..+-|.++.+ ||+|++..||+-+|+
T Consensus 322 i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 322 IMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred HHHHHhhHHHHHHHHhhheEEEecccc
Confidence 34455566655 556666666643333
No 51
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=21.54 E-value=19 Score=30.30 Aligned_cols=54 Identities=24% Similarity=0.554 Sum_probs=32.6
Q ss_pred hHHHHHHHHhhhceeEEEeecccccCCCCCceeeecCCCCccCCcccccCCCcCCCCCCCCCc
Q 009107 445 AYFLILSVLIFGVTWACCKCRKRRWNDGVPYQELEMGLPESVSAMNVETAEGWDEGWDDDWDE 507 (543)
Q Consensus 445 AYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQELEMeLP~S~ga~evETaDGWDdgWDDDWDD 507 (543)
-|.-|+.++|+|.+|--++=-+|- +--+|-.=-=+||.- -+-++.||+ +|||-.
T Consensus 6 dYWWiiLl~lvG~i~n~iK~L~Rv--D~K~fL~nKP~lPPH-----RDnN~~WDd--eDDwPk 59 (63)
T PF13980_consen 6 DYWWIILLILVGMIINGIKELRRV--DHKKFLDNKPELPPH-----RDNNAKWDD--EDDWPK 59 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CHHHHhcCCCCCCCC-----Ccccccccc--cccccc
Confidence 477788888999998888633331 112332222245542 345677888 788854
No 52
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.79 E-value=1.9e+02 Score=26.23 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=19.5
Q ss_pred eEEEEEeCCCceEEEEEEcCccccC
Q 009107 355 LTILVQNEGEKTLIVTITIPTAVEN 379 (543)
Q Consensus 355 LsLLVQNkGe~~LkVtItAPd~V~~ 379 (543)
+.++-++.|+.-.+|+|+.|++++.
T Consensus 30 ~~~~p~~~~~~L~~l~I~~p~~~~~ 54 (146)
T PF10989_consen 30 TIIVPQDAGEALQKLTISQPDGFDG 54 (146)
T ss_pred EEEccccCCCcceeEEEEccccccc
Confidence 3444568899999999999988755
No 53
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.50 E-value=13 Score=33.43 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhhhceeEEEeecccccCCCCCce
Q 009107 444 GAYFLILSVLIFGVTWACCKCRKRRWNDGVPYQ 476 (543)
Q Consensus 444 GAYfLv~TvVLiGgvWaCCkfRKrR~qdGvpYQ 476 (543)
-.+-+++++||++.++..+.++|++++ .+|.
T Consensus 21 ~GWwll~~lll~~~~~~~~~~~r~~~~--~~yr 51 (146)
T PF14316_consen 21 PGWWLLLALLLLLLILLLWRLWRRWRR--NRYR 51 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHH
Confidence 344455555555556666665555554 3554
Done!