Query 009107
Match_columns 543
No_of_seqs 34 out of 36
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 18:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ys4_A Hydrocephalus-inducing 88.8 4.1 0.00014 33.7 10.3 87 327-413 17-107 (122)
2 3lge_E Sorting nexin-9; comple 86.0 0.26 9E-06 35.2 1.3 13 494-506 7-19 (31)
3 2qsv_A Uncharacterized protein 75.8 13 0.00044 33.7 9.0 51 350-400 18-69 (220)
4 2e6j_A Hydin protein; PAPD, st 58.7 38 0.0013 26.7 7.5 51 350-400 25-80 (112)
5 2klu_A T-cell surface glycopro 47.9 3.2 0.00011 34.2 -0.4 11 461-471 31-41 (70)
6 2qsv_A Uncharacterized protein 28.9 81 0.0028 28.5 5.5 49 351-399 134-184 (220)
7 2r39_A FIXG-related protein; s 27.6 2.4E+02 0.0083 23.1 7.8 47 353-399 33-82 (118)
8 2l8s_A Integrin alpha-1; trans 25.3 8.5 0.00029 30.3 -1.4 22 449-470 21-42 (54)
9 2jwa_A Receptor tyrosine-prote 25.2 8.2 0.00028 29.2 -1.4 27 442-469 14-40 (44)
10 2knc_A Integrin alpha-IIB; tra 23.9 13 0.00043 29.1 -0.6 21 450-470 25-45 (54)
11 3qbt_B Inositol polyphosphate 23.6 2.9E+02 0.0099 23.7 7.8 48 352-399 44-99 (140)
12 2ks1_B Epidermal growth factor 22.8 12 0.00041 28.1 -0.9 19 444-462 16-34 (44)
13 3rgh_A Filamin-A; cell adhesio 22.8 2E+02 0.0067 23.1 6.2 44 354-400 28-71 (100)
14 3t5v_C 26S proteasome complex 21.3 35 0.0012 29.2 1.5 11 494-504 57-67 (89)
15 3j0c_A E1 envelope glycoprotei 21.0 2.3E+02 0.0078 29.9 7.6 124 341-469 303-441 (442)
16 2l2t_A Receptor tyrosine-prote 20.3 14 0.00049 27.8 -1.0 14 449-462 20-33 (44)
No 1
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.83 E-value=4.1 Score=33.67 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=62.0
Q ss_pred cccCCCcccccccceeeeeeccCCCCcceEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCC----
Q 009107 327 ETCNGLHKCEDLKALIACIQNFDTGSGELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARK---- 402 (543)
Q Consensus 327 eeCDpshkC~d~kkmiACLqVpgn~S~~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis~~n---- 402 (543)
-.|.+..-+.+.-.-+-|-.++-.......|+|+|.|.-+...++..+..+.+.+..-.|.-+++.+|+|++.-..
T Consensus 17 l~a~~~~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g~~ 96 (122)
T 2ys4_A 17 IKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGESMQLEVEFEPQSVGDH 96 (122)
T ss_dssp SCCCSCCCCCCCCSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCTTEEEESSEEEECTTCEEEEEEEECCSSSBCC
T ss_pred EEEEcCCcEECCCCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCCCeEEECCcCEECCCCEEEEEEEEEcCCCccE
Confidence 4554443333422344444555567788999999999999999998887788999999999999999999998322
Q ss_pred CceEEEEeccC
Q 009107 403 NSKLVLNAGNG 413 (543)
Q Consensus 403 s~~IVLkAGkG 413 (543)
...|++...++
T Consensus 97 ~~~l~v~~~~g 107 (122)
T 2ys4_A 97 SGRLIVCYDTG 107 (122)
T ss_dssp CCBCEEEESSS
T ss_pred EEEEEEEECCC
Confidence 24455554433
No 2
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=85.95 E-value=0.26 Score=35.16 Aligned_cols=13 Identities=62% Similarity=1.444 Sum_probs=10.5
Q ss_pred CCCcCCCCCCCCC
Q 009107 494 AEGWDEGWDDDWD 506 (543)
Q Consensus 494 aDGWDdgWDDDWD 506 (543)
+-|=|+.||||||
T Consensus 7 ~~G~DDDWDdeWD 19 (31)
T 3lge_E 7 ATGDDDDWDEDWD 19 (31)
T ss_pred CCCCccccccccc
Confidence 3466889999999
No 3
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=75.83 E-value=13 Score=33.69 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=43.0
Q ss_pred CCCcceEEEEEeCCCceEEEEE-EcCccccCCCceeeecccceeEEEEEEec
Q 009107 350 TGSGELTILVQNEGEKTLIVTI-TIPTAVENPLKQLKISKHQTQKINISLSA 400 (543)
Q Consensus 350 n~S~~LsLLVQNkGe~~LkVtI-tAPd~V~~~l~eL~L~KhqskKVnISis~ 400 (543)
.+...+.+.+.|.|+.+|.++. .+|.++.....+-.|.-++...|+|+|..
T Consensus 18 g~~~~~~~~i~N~g~~pl~i~~~~~p~~~~~~~~~~~I~PG~~g~I~vt~~~ 69 (220)
T 2qsv_A 18 EDEGVVRLVVNNTDESDLQVAVVSLPSFVSLDDRAFRLQAREPRELNLSLAV 69 (220)
T ss_dssp TCCCEEEEEEEECSSSCEEEEEEECCTTEECSCCEEEECSSSCEEEEEEECC
T ss_pred CCcceEEEEEEeCCCCceEEEeccCCCceEeeeCcceeCCCCceEEEEEEcc
Confidence 4556778999999999999997 47888887777788888999999999874
No 4
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.69 E-value=38 Score=26.72 Aligned_cols=51 Identities=24% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCcceEEEEEeCCCceEEEEEEcCc-----cccCCCceeeecccceeEEEEEEec
Q 009107 350 TGSGELTILVQNEGEKTLIVTITIPT-----AVENPLKQLKISKHQTQKINISLSA 400 (543)
Q Consensus 350 n~S~~LsLLVQNkGe~~LkVtItAPd-----~V~~~l~eL~L~KhqskKVnISis~ 400 (543)
.......+.++|.|.-++...+..+. .+...+.+=.|.-+++..|+|++..
T Consensus 25 g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 25 GSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSS 80 (112)
T ss_dssp SCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECC
T ss_pred CCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEEC
Confidence 44577899999999999999985321 2455666667778889999999884
No 5
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=47.90 E-value=3.2 Score=34.21 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=6.9
Q ss_pred EEeecccccCC
Q 009107 461 CCKCRKRRWND 471 (543)
Q Consensus 461 CCkfRKrR~qd 471 (543)
|+++|+||+++
T Consensus 31 cvkcrhRrrqA 41 (70)
T 2klu_A 31 SVRSRHRRRQA 41 (70)
T ss_dssp HHHSSCCSSSC
T ss_pred hhHHHHHHHHH
Confidence 33477777774
No 6
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=28.89 E-value=81 Score=28.47 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=35.4
Q ss_pred CCcceEEEEEeCCCceEEE-EEEcC-ccccCCCceeeecccceeEEEEEEe
Q 009107 351 GSGELTILVQNEGEKTLIV-TITIP-TAVENPLKQLKISKHQTQKINISLS 399 (543)
Q Consensus 351 ~S~~LsLLVQNkGe~~LkV-tItAP-d~V~~~l~eL~L~KhqskKVnISis 399 (543)
......+.+.|.|..+|.+ +|.++ .-......+-.|.-+++.+|+|+|.
T Consensus 134 ~~~~~~f~i~N~G~~pL~I~~v~~scgct~~~~~~~~i~PGe~~~i~v~~~ 184 (220)
T 2qsv_A 134 ETTKAAIEIRNVGAGPLRLHSVTTRNPALTAVPDRTEIKPGGSTLLRIAVD 184 (220)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEECSTTEEEEESCSEECTTCEEEEEEEEC
T ss_pred CeEEEEEEEEECCCCCEEEEEEEeCCCCEeeecCCccCCCCCEEEEEEEEe
Confidence 5567799999999999999 66665 2333333344566788888888887
No 7
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=27.57 E-value=2.4e+02 Score=23.14 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=34.2
Q ss_pred cceEEEEEeCCCceEEEEEEcC--ccccCC-CceeeecccceeEEEEEEe
Q 009107 353 GELTILVQNEGEKTLIVTITIP--TAVENP-LKQLKISKHQTQKINISLS 399 (543)
Q Consensus 353 ~~LsLLVQNkGe~~LkVtItAP--d~V~~~-l~eL~L~KhqskKVnISis 399 (543)
-.|.|-+.|+.+.+-.+.|++. ..+... ...++|..++...+.|.+.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEE
Confidence 3689999999999888888663 223321 2358888888888888776
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.27 E-value=8.5 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=16.2
Q ss_pred HHHHHhhhceeEEEeecccccC
Q 009107 449 ILSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 449 v~TvVLiGgvWaCCkfRKrR~q 470 (543)
++.+||+.+.|-|-.|+|+|..
T Consensus 21 LLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHcCcccCCCcc
Confidence 3444567788999999888754
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.18 E-value=8.2 Score=29.19 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHhhhceeEEEeeccccc
Q 009107 442 INGAYFLILSVLIFGVTWACCKCRKRRW 469 (543)
Q Consensus 442 I~GAYfLv~TvVLiGgvWaCCkfRKrR~ 469 (543)
|.++...++.+|+++.+|+++ +||||.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~-~RRR~~ 40 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGIL-IKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHhh-eehhhh
Confidence 444445566777777777655 344443
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.88 E-value=13 Score=29.15 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=15.7
Q ss_pred HHHHhhhceeEEEeecccccC
Q 009107 450 LSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 450 ~TvVLiGgvWaCCkfRKrR~q 470 (543)
+.+||+.+.|-|-.|+|+|..
T Consensus 25 lL~li~~~LwK~GFFkR~~~~ 45 (54)
T 2knc_A 25 LLTILVLAMWKVGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHcCcccCCCCC
Confidence 444567788999989888864
No 11
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=23.65 E-value=2.9e+02 Score=23.66 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=36.3
Q ss_pred CcceEEEEEeCCCceEEEEEEcC--------ccccCCCceeeecccceeEEEEEEe
Q 009107 352 SGELTILVQNEGEKTLIVTITIP--------TAVENPLKQLKISKHQTQKINISLS 399 (543)
Q Consensus 352 S~~LsLLVQNkGe~~LkVtItAP--------d~V~~~l~eL~L~KhqskKVnISis 399 (543)
..--+|.|+|.|+-+....+..+ ..+.+.+..-.|.-+++..|.|++.
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 34569999999999999998754 2344555666777888888888877
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.82 E-value=12 Score=28.08 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=8.9
Q ss_pred hhHHHHHHHHhhhceeEEE
Q 009107 444 GAYFLILSVLIFGVTWACC 462 (543)
Q Consensus 444 GAYfLv~TvVLiGgvWaCC 462 (543)
|+..-++.+++++++|.++
T Consensus 16 gVVgGv~~~~ii~~~~~~~ 34 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLF 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 3444344444555555444
No 13
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=22.80 E-value=2e+02 Score=23.11 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=31.2
Q ss_pred ceEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEec
Q 009107 354 ELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSA 400 (543)
Q Consensus 354 ~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis~ 400 (543)
.++|-..+.|...|.|.|+.|+.. ..++++..+..-.-.|+|+-
T Consensus 28 ~F~V~~~~aG~~~l~v~i~~~~g~---~~~~~v~d~~dGty~V~Y~p 71 (100)
T 3rgh_A 28 QFQVDCSSAGSAELTIEICSEAGL---PAEVYIQDHGDGTHTITYIP 71 (100)
T ss_dssp EEEEECTTSCSCCEEEEEECTTSC---BCEEEEEECSSSEEEEEEEC
T ss_pred EEEEEECCCCCceEEEEEECCCCC---EeEEEEEeCCCCEEEEEEEe
Confidence 355555677889999999988652 23567767777777788774
No 14
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.34 E-value=35 Score=29.19 Aligned_cols=11 Identities=45% Similarity=1.169 Sum_probs=6.0
Q ss_pred CCCcCCCCCCC
Q 009107 494 AEGWDEGWDDD 504 (543)
Q Consensus 494 aDGWDdgWDDD 504 (543)
..-|.++||||
T Consensus 57 ~~lWEddWDDD 67 (89)
T 3t5v_C 57 TNIWEENWDDV 67 (89)
T ss_dssp CCCBCTTTTTC
T ss_pred ccccccccccc
Confidence 44566666443
No 15
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=20.96 E-value=2.3e+02 Score=29.89 Aligned_cols=124 Identities=12% Similarity=0.190 Sum_probs=68.4
Q ss_pred eeeeeeccCCCCcceEEEEEeCCCceEEEEEEcCc-cccCCCceeeecccceeEEEEEEecCC-CceEEEE--eccCceE
Q 009107 341 LIACIQNFDTGSGELTILVQNEGEKTLIVTITIPT-AVENPLKQLKISKHQTQKINISLSARK-NSKLVLN--AGNGECV 416 (543)
Q Consensus 341 miACLqVpgn~S~~LsLLVQNkGe~~LkVtItAPd-~V~~~l~eL~L~KhqskKVnISis~~n-s~~IVLk--AGkGdCv 416 (543)
+..|.-.++= |=...++=+..+.=+.-|..++ .+.+.+..++|. +.-++++.++... ....+|. ...-.|.
T Consensus 303 v~~CtySsDf---GGvatl~Y~~~k~GkCaVHs~S~~atl~e~~v~v~--~~g~~t~hFSTas~~~~F~v~iC~~~~tC~ 377 (442)
T 3j0c_A 303 LNECVYSSDF---GGIATVKYSASKSGKCAVHVPSGTATLKEAAVELT--EQGSATIHFSTANIHPEFRLQICTSYVTCK 377 (442)
T ss_dssp EEEEBCSSSC---CEEEEEEEEESSCEEEEEECSSTTEEESCSEEEEC--SSCEEEEEEEESCSSCEEEEEETTEEEEEE
T ss_pred EEEeEeccCc---CceEEEEEecCCCcccceeccCCceEeeeeeeeee--ccceEEEEEecCCCCCCEEEEeccCcceec
Confidence 3567777653 3356666666666677776663 334444455555 5556666666433 3444444 4444454
Q ss_pred EecCCCC--------cc-ccccccccc--cceecccchhhHHHHHHHHhhhceeEEEeeccccc
Q 009107 417 LHMGRPA--------SE-EKIFIYLPS--YDKILTPINGAYFLILSVLIFGVTWACCKCRKRRW 469 (543)
Q Consensus 417 Lhi~~~v--------sd-~n~f~~~pS--Y~~ilTPI~GAYfLv~TvVLiGgvWaCCkfRKrR~ 469 (543)
-.-++|- .+ +.|+..+.. ..=+..-+.|+.+|+++.||+.++-+|+.|+|+|+
T Consensus 378 a~C~PPkDHIV~~p~~h~~~~~~~vS~Taw~W~~~l~GG~~~~~~i~~~~~~~v~~~~~~r~~~ 441 (442)
T 3j0c_A 378 GDCHPPKDHIVTHPQYHAQTFTAAVSKTAWTWLTSLLGGSAVIIIIGLVLATIVAMYVLTNQKH 441 (442)
T ss_dssp CCCBCCSCCEESSCCCCCCCCSCCCCHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCcccccCCcccccccccccchhhHHHHHHHHhcccHHHHHHHHHHHHHHhhhhhhhccc
Confidence 4433321 22 222221110 00012235578888888888888889999988876
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.30 E-value=14 Score=27.80 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=6.6
Q ss_pred HHHHHhhhceeEEE
Q 009107 449 ILSVLIFGVTWACC 462 (543)
Q Consensus 449 v~TvVLiGgvWaCC 462 (543)
++.+++++++|.++
T Consensus 20 v~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 20 LFILVIVGLTFAVY 33 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444554444
Done!