Query 009107
Match_columns 543
No_of_seqs 34 out of 36
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 18:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009107.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009107hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w8oa1 b.1.18.2 (A:403-505) S 61.4 8.1 0.00059 30.2 6.1 52 351-402 17-71 (103)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 39.5 1.9 0.00014 33.6 -1.1 28 443-470 33-60 (100)
3 d2dica1 b.1.18.10 (A:8-105) Fi 38.5 22 0.0016 26.5 5.1 63 329-400 2-65 (98)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 37.5 1.9 0.00014 34.2 -1.4 27 444-470 40-66 (107)
5 d2w0pa1 b.1.18.10 (A:2237-2328 31.9 32 0.0024 25.7 5.0 54 353-411 21-76 (92)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 25.0 1.6 0.00011 33.9 -3.9 22 449-470 28-49 (91)
7 d2dmba1 b.1.18.10 (A:8-118) Fi 23.6 1.2E+02 0.0085 22.9 7.1 37 360-399 31-67 (111)
8 d2d7ma1 b.1.18.10 (A:8-109) Fi 21.5 88 0.0064 23.3 5.8 56 353-411 25-82 (102)
9 d2dj4a1 b.1.18.10 (A:8-108) Fi 16.8 85 0.0062 23.2 4.7 43 355-400 26-68 (101)
10 d2di8a1 b.1.18.10 (A:8-105) Fi 14.8 1.4E+02 0.01 21.9 5.6 43 353-400 23-65 (98)
No 1
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=61.43 E-value=8.1 Score=30.21 Aligned_cols=52 Identities=6% Similarity=0.040 Sum_probs=44.9
Q ss_pred CCcceEEEEEeCCCceE---EEEEEcCccccCCCceeeecccceeEEEEEEecCC
Q 009107 351 GSGELTILVQNEGEKTL---IVTITIPTAVENPLKQLKISKHQTQKINISLSARK 402 (543)
Q Consensus 351 ~S~~LsLLVQNkGe~~L---kVtItAPd~V~~~l~eL~L~KhqskKVnISis~~n 402 (543)
++..+.+.|.|.|...+ .+.+.+|..|......+.|..+++..|.+.++.+.
T Consensus 17 ~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt~p~ 71 (103)
T d1w8oa1 17 QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTITVPA 71 (103)
T ss_dssp CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEECCT
T ss_pred CeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEECCC
Confidence 56789999999998764 68889999999998899999999999999998543
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=39.54 E-value=1.9 Score=33.61 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHhhhceeEEEeecccccC
Q 009107 443 NGAYFLILSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 443 ~GAYfLv~TvVLiGgvWaCCkfRKrR~q 470 (543)
...-++|+++|....+|+|++||+|+..
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r~~~~~ 60 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFHEKRNK 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 3444555666666777788888877654
No 3
>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.52 E-value=22 Score=26.54 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=36.8
Q ss_pred cCCCccccccc-ceeeeeeccCCCCcceEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEec
Q 009107 329 CNGLHKCEDLK-ALIACIQNFDTGSGELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSA 400 (543)
Q Consensus 329 CDpshkC~d~k-kmiACLqVpgn~S~~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis~ 400 (543)
||++ +|+..+ -|..|. + .....+.|...+.|...|.|.|..|..+ ++.+.....-...|+|+-
T Consensus 2 ~Dps-kv~v~G~Gl~~~~-v--g~~~~F~V~~~~ag~g~l~v~v~~p~~~-----~~~v~~~~dg~y~v~y~P 65 (98)
T d2dica1 2 CQPS-RVQAQGPGLKEAF-T--NKPNVFTVVTRGAGIGGLGITVEGPSES-----KINCRDNKDGSCSAEYIP 65 (98)
T ss_dssp CCTT-SCEEESHHHHCEE-T--TCCEEEEEECTTTCSSCEEEEEESSSCC-----CCEEEECSSSCEEEEECC
T ss_pred CCCC-eeEEECCCcCceE-C--CCeEEEEEEcCCCCCCCcEEEEEeCCCc-----EEEEEECCCCEEEEEEEE
Confidence 6666 466622 243332 2 1233445555577888999999999553 334444455556777763
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=37.50 E-value=1.9 Score=34.24 Aligned_cols=27 Identities=4% Similarity=-0.095 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhhceeEEEeecccccC
Q 009107 444 GAYFLILSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 444 GAYfLv~TvVLiGgvWaCCkfRKrR~q 470 (543)
.+-++|+++|....+|+|++||+++..
T Consensus 40 ~i~~~I~~~V~~~~~~~~~~~r~~~~~ 66 (107)
T d3ehbb2 40 YIITAVTIFVCLLLLICIVRFNRRANP 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSBTTTSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCc
Confidence 334444555566777888888877653
No 5
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.88 E-value=32 Score=25.66 Aligned_cols=54 Identities=9% Similarity=0.277 Sum_probs=35.3
Q ss_pred cceEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCCC--ceEEEEec
Q 009107 353 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARKN--SKLVLNAG 411 (543)
Q Consensus 353 ~~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis~~ns--~~IVLkAG 411 (543)
..+.|-..+.|...|.|.|..|+.+ ++.+.........|+|+-... =.|.|+.+
T Consensus 21 ~~F~V~~~~ag~g~l~v~v~gp~~~-----~v~v~d~~dg~y~v~ytP~~~G~y~i~V~~~ 76 (92)
T d2w0pa1 21 AEFSIWTREAGAGGLAIAVEGPSKA-----EISFEDRKDGSCGVAYVVQEPGDYEVSVKFN 76 (92)
T ss_dssp EEEEEECGGGCSCCEEEEEEESSCC-----EEEEEECTTSCEEEEEECSSCEEEEEEEEET
T ss_pred EEEEEEeCCCCCCceEEEEEeCCce-----EEEEEECCCCEEEEEEEECCCceEEEEEEEC
Confidence 3455555677999999999988542 456666666777888874333 34444443
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=25.05 E-value=1.6 Score=33.90 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=13.6
Q ss_pred HHHHHhhhceeEEEeecccccC
Q 009107 449 ILSVLIFGVTWACCKCRKRRWN 470 (543)
Q Consensus 449 v~TvVLiGgvWaCCkfRKrR~q 470 (543)
++.+|.....|.+.+||+|+..
T Consensus 28 v~v~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHHHHhhheeeeccCCc
Confidence 3444555556677778877655
No 7
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.56 E-value=1.2e+02 Score=22.90 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=24.5
Q ss_pred EeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEe
Q 009107 360 QNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLS 399 (543)
Q Consensus 360 QNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis 399 (543)
.+.|...|.|.|+.|..-.+ ++.|.+...-...|+|+
T Consensus 31 ~~ag~g~l~v~v~~p~g~~~---~~~v~d~~~G~y~v~f~ 67 (111)
T d2dmba1 31 KTAGKGKVTCTVLTPDGTEA---EADVIENEDGTYDIFYT 67 (111)
T ss_dssp SSSCSCCEEEEEECTTSCBC---CCEEEECTTSCEEEEEE
T ss_pred CCCCCCcEEEEEEECCCCEE---EeEEEECCCCEEEEEEE
Confidence 48899999999998854322 44444444445666666
No 8
>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.49 E-value=88 Score=23.30 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=34.9
Q ss_pred cceEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCC--CceEEEEec
Q 009107 353 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARK--NSKLVLNAG 411 (543)
Q Consensus 353 ~~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis~~n--s~~IVLkAG 411 (543)
..+.+-..+.|...|+|.|..|+.-. .++.|.......-.|+|+-.. .-.|.|..+
T Consensus 25 ~~F~Vd~~~aG~g~l~v~i~~p~g~~---~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~ 82 (102)
T d2d7ma1 25 VEFTIDARDAGEGLLTVQILDPEGKP---KKANIRDNGDGTYTVSYLPDMSGRYTITIKYG 82 (102)
T ss_dssp EEEEEEESSSCSSCEEEEEECTTSCB---CCEEEEECSSSCEEEEECCCSCEEEEEEEEES
T ss_pred EEEEEEeCCCCCCcEEEEEEeCCCCE---eeeEEEeCCCcEEEEEEEECCCEeEEEEEEEC
Confidence 34555567889999999999995422 245555555556677777322 234555444
No 9
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.84 E-value=85 Score=23.23 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=28.3
Q ss_pred eEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEec
Q 009107 355 LTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSA 400 (543)
Q Consensus 355 LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis~ 400 (543)
+.+-....|...|+|.|..|+.-. .++++.....-.-.|+|+-
T Consensus 26 F~Vd~~~aG~g~l~v~i~~p~g~~---~~~~v~~~~dG~y~v~y~P 68 (101)
T d2dj4a1 26 FTVDSSKAGLAPLEVRVLGPRGLV---EPVNVVDNGDGTHTVTYTP 68 (101)
T ss_dssp EEEECTTTCSCCEEEEEECSSSCE---ECCCCEECSSSEEEEEECC
T ss_pred EEEEeCCCCCCCEEEEEEECCCCE---eEEEEEeCCCCEEEEEEEe
Confidence 444445678899999999995422 2445555555667777773
No 10
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.78 E-value=1.4e+02 Score=21.94 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=30.7
Q ss_pred cceEEEEEeCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEec
Q 009107 353 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSA 400 (543)
Q Consensus 353 ~~LsLLVQNkGe~~LkVtItAPd~V~~~l~eL~L~KhqskKVnISis~ 400 (543)
..+.+-..+.|...|+|.|..|+.+ ++++.......-.|+|+-
T Consensus 23 ~~F~V~~~~aG~g~l~v~i~gp~~~-----~v~v~~~~dg~y~v~y~P 65 (98)
T d2di8a1 23 SDFIVDTRDAGYGGISLAVEGPSKV-----DIQTEDLEDGTCKVSYFP 65 (98)
T ss_dssp EEEEEECTTTCBCCEEEEEESSSCC-----CEECCBCTTSCEEEEECC
T ss_pred EEEEEEeCCCCCCceEEEEEeCCCc-----eEEEEECCCCEEEEEEEE
Confidence 3455555677899999999988542 466666666777788873
Done!