Citrus Sinensis ID: 009108
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | 2.2.26 [Sep-21-2011] | |||||||
| Q56ZZ7 | 546 | Plastidic glucose transpo | yes | no | 0.987 | 0.981 | 0.793 | 0.0 | |
| Q0WVE9 | 524 | Probable plastidic glucos | no | no | 0.839 | 0.870 | 0.430 | 1e-109 | |
| Q9FYG3 | 493 | Probable plastidic glucos | no | no | 0.850 | 0.937 | 0.446 | 1e-102 | |
| Q2V4B9 | 495 | Probable plastidic glucos | no | no | 0.812 | 0.890 | 0.444 | 1e-100 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.804 | 0.956 | 0.360 | 9e-72 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.793 | 0.934 | 0.342 | 3e-65 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.808 | 0.960 | 0.319 | 9e-65 | |
| P47842 | 495 | Solute carrier family 2, | yes | no | 0.793 | 0.870 | 0.335 | 2e-61 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | no | 0.854 | 0.918 | 0.349 | 4e-60 | |
| Q5R608 | 496 | Solute carrier family 2, | yes | no | 0.795 | 0.870 | 0.335 | 7e-60 |
| >sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/547 (79%), Positives = 473/547 (86%), Gaps = 11/547 (2%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFT 413
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFGTAVASSLMD+ GRK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 414 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 473
GMA SMLLLSLSFTWK LA YSGTLAV+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 474 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 533
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 534 EIERALN 540
EIE AL
Sbjct: 537 EIELALT 543
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/462 (43%), Positives = 302/462 (65%), Gaps = 6/462 (1%)
Query: 84 DIEEATPFKPQAKKSSGV----VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAEN 139
D E +P P+ K S+ + P V VA + LFGYH+GV+NG + +A++LG N
Sbjct: 58 DDHEISPVPPE-KFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGN 116
Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
++L+G +VS +AGA +GS G L DKFG RTFQ+ +PL GA + A A S+ ++
Sbjct: 117 SILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILC 176
Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259
GR L G+GIG+++ +VP+YISE++PT+ RG+LG++ Q+ C+GI+ +L+ G+P +P W
Sbjct: 177 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHW 236
Query: 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319
WRTM +A++P LLALGM + ESPRWL + G+ +A+ I+ ++G V + + D +
Sbjct: 237 WRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQS 296
Query: 320 AGQGS-AEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV 378
+ S + + W +L + +V +G +LF+ QQ AGIN V+Y+S+ F++VGI S
Sbjct: 297 VMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGA 356
Query: 379 AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTL 438
AS VG N G AS L+D+QGRK LL S+ GMA SM L+ + + + S +L
Sbjct: 357 QASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSL 416
Query: 439 AVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498
++LGT++Y+ SF++GAGPV L++PE+ ++R R K + S +HW+SNF++GL+FL +V
Sbjct: 417 SILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVE 476
Query: 499 KFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 540
K+G+ TVY F +V LLA + + VETKGRSLEEIE +LN
Sbjct: 477 KYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLN 518
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/468 (44%), Positives = 302/468 (64%), Gaps = 6/468 (1%)
Query: 76 VKAQASAGDIEEATPFKPQAKKSS-GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL 134
+ + S+G +E + + S LP V VA + + LFGYHLGVVN LE ++ DL
Sbjct: 24 IDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFLFGYHLGVVNEPLESISSDL 83
Query: 135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV 194
G + +T+ +G +VS L GA +GS G +AD FGR R FQ+ A+P+ GAF+ + S+
Sbjct: 84 GFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQICALPMILGAFVSGVSNSL 143
Query: 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254
M++GR L G G+G+ + LY++E+SP +RG GS Q+ C+G++AAL G+P+
Sbjct: 144 AVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFIQIATCLGLMAALFIGIPVH 203
Query: 255 GNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVM 314
WWR F L+ IP+ LLALGM L ESP+WLF+QGK +EAE + L G V M
Sbjct: 204 NITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIAEAEAEFERLLGGSHVKTAM 263
Query: 315 LDLTNAG-QGSAEPE-AGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV 372
+L + EP+ +L R+ +VV +G+ LF QQL+GINAV Y+S++VF+S
Sbjct: 264 AELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTLFALQQLSGINAVFYFSSTVFKSA 323
Query: 373 GIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLA 432
G+ SD+ + VG +N+ G+ +A LMD+ GRK LL +SF GMAA+M L + T L
Sbjct: 324 GVPSDL-GNIFVGVSNLLGSVIAMVLMDKVGRKLLLLWSFIGMAAAM-ALQVGATSSYLP 381
Query: 433 PYSG-TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGL 491
+S L+V GT+++VL+F+LGAGPVP LLLPEIF SRIRAKA+A + +HW+ NF +GL
Sbjct: 382 HFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRIRAKAMAFCMSVHWVINFFVGL 441
Query: 492 YFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERAL 539
FL ++ K G +Y F+T CL+AV+++ NV+ETKG++L+EIE +L
Sbjct: 442 LFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGKTLQEIEISL 489
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/450 (44%), Positives = 294/450 (65%), Gaps = 9/450 (2%)
Query: 92 KPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLL 151
P K+S LP V VA L ++LFGYHLGVVN LE ++ DLG + NT+ +G +VS+ L
Sbjct: 48 NPSWKRS----LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCL 103
Query: 152 AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS 211
GA +GS G +AD GR R FQL A+P+ GA + A+ +S+ M++GR L GIG+GI
Sbjct: 104 GGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIG 163
Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271
++ LY++E+SP +RG GS Q+ C+G+L +L AG+P N WWR F ++ +P+
Sbjct: 164 PSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPA 223
Query: 272 ILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331
+LA+ M L ESP+WLF++G+ +EAE + L G V M +L + +G A
Sbjct: 224 AMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKL 283
Query: 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG 391
+L R ++VV +G+ LF QQL+GINAV Y+S++VF+ G+ S +A+ VG N+ G
Sbjct: 284 SELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPS-ASANICVGVCNLLG 342
Query: 392 TAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT--LAVLGTVLYVLS 449
+ VA LMD+ GRK LL SF GMA S+ L ++++T + +P+ GT L+V G +L+VLS
Sbjct: 343 STVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYT-SLPSPF-GTLFLSVGGMLLFVLS 400
Query: 450 FSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGF 509
F+ GAGPVP+LLL EI R+RA A+A+ L +HW+ NF +GL FL ++ + G + F
Sbjct: 401 FATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIF 460
Query: 510 ATVCLLAVLYIAVNVVETKGRSLEEIERAL 539
C++AV+++ NVVETKG+SL+EIE +L
Sbjct: 461 GFFCVVAVIFVQKNVVETKGKSLQEIEISL 490
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 161/447 (36%), Positives = 253/447 (56%), Gaps = 10/447 (2%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
KK S + L F G LG L+GY GV++GA+ ++ K+LG+ N +G +VSSLL GA
Sbjct: 2 KKQSNIWLYFFG--ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAI 57
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
+GS G L D+FGR + A+ G A A + M++ R++ G+ +G S+ IV
Sbjct: 58 LGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIV 117
Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
PLY+SE++P RGAL S+NQL I VGIL + + A + WR M GLAA+PS+LL
Sbjct: 118 PLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFA-DAEAWRWMLGLAAVPSLLLL 176
Query: 276 LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335
+G+ PESPRWLF G++S+A+K ++ L G + + + + D+ A + E G +LF
Sbjct: 177 IGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEA---EKQDEGGLKELF 233
Query: 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGI--ESDVAASALVGAANVFGTA 393
+ G L QQ G N ++YY+ F +VG + + + +G NV T
Sbjct: 234 DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTL 293
Query: 394 VASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLG 453
VA ++D+ GRK LL F GM S+++L+L + P + V+ ++++ F++
Sbjct: 294 VAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVS 353
Query: 454 AGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 513
GPV ++LPE+F +R +S M + ++ L + ++ GIS ++L +A +
Sbjct: 354 WGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIG 413
Query: 514 LLAVLYIAVNVVETKGRSLEEIERALN 540
++A L++ V ETKGRSLEEIE+ L
Sbjct: 414 IMAFLFVRFKVTETKGRSLEEIEQDLR 440
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 259/452 (57%), Gaps = 21/452 (4%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
K + ++ F G LG +L+GY GV++GAL ++ D I T+ +G +VS LL GA
Sbjct: 3 KDTRKYMIYFFG--ALGGLLYGYDTGVISGALLFINND--IPLTTLTEGLVVSMLLLGAI 58
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
GS G+ +D++GR + + ++ GA CA +Q++ +I RV+ G+ +G S+A+V
Sbjct: 59 FGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALV 118
Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGL---PLAGNPLWWRTMFGLAAIPSI 272
P+Y+SE++PT+IRG LG++N L I GIL A + P WR M GLAA+P++
Sbjct: 119 PVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAV 174
Query: 273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWF 332
LL +G+ PESPRWL ++G + EA + + + + ++ ++L QG AE +
Sbjct: 175 LLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPK---DIEMELAEMKQGEAEKKETTL 231
Query: 333 DLFSSRYWK-VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASAL----VGAA 387
+ +++ + ++ +G L +FQQ GIN V+YY+ ++F G+ + +ASAL +G
Sbjct: 232 GVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGT--SASALGTMGIGIL 289
Query: 388 NVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 447
NV A L+DR GRK LL + G+ S+ LS L+ + + V+ +Y+
Sbjct: 290 NVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTVVFLGVYI 349
Query: 448 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYL 507
+ + GPV +L+PE+F S+ R A + + +N ++ L F +++ GI+ V++
Sbjct: 350 VFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFM 409
Query: 508 GFATVCLLAVLYIAVNVVETKGRSLEEIERAL 539
F+ +CLL+ + V ETKG+SLEEIE +L
Sbjct: 410 VFSVICLLSFFFAFYMVPETKGKSLEEIEASL 441
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 252/447 (56%), Gaps = 8/447 (1%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
K S+G V F LG +LFGY GV++GA+ ++ K + + QGW+VS++L GA
Sbjct: 3 KVSTGFVYFF---GALGGLLFGYDTGVISGAILFIQKQMNLGSWQ--QGWVVSAVLLGAI 57
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
+G+ G +D+FGR + L A+ GA A + T+II R++ G+ +G +SA++
Sbjct: 58 LGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALI 117
Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
P Y++E++P++ RG + S+ QL + GIL A + +G WR M G AAIP+ LL
Sbjct: 118 PTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLF 177
Query: 276 LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335
LG + PESPR+L + G EA + T+ ++V+ V ++ + + + GW +LF
Sbjct: 178 LGGLILPESPRFLVKSGHLDEARHVLDTMNKHDQVA-VNKEINDIQESAKIVSGGWSELF 236
Query: 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--GIESDVAASALVGAANVFGTA 393
+ +G L +FQQ+ G N V+YY+ ++F V G+ + + A +G NV TA
Sbjct: 237 GKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSAALLAHIGIGIFNVIVTA 296
Query: 394 VASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLG 453
+A ++MD+ RK ++ GM S+ ++S+ + + + ++V+ +Y+ FS
Sbjct: 297 IAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVIALTVYIAFFSAT 356
Query: 454 AGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 513
GPV +++ E+F IR + + ++W +N ++ L F S+++ FG ++++G+ +C
Sbjct: 357 WGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFGTGSLFIGYGILC 416
Query: 514 LLAVLYIAVNVVETKGRSLEEIERALN 540
++ ++ V ET+ RSLE+IE L
Sbjct: 417 FASIWFVQKKVFETRNRSLEDIEATLR 443
|
Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|P47842|GTR3_CANFA Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/453 (33%), Positives = 249/453 (54%), Gaps = 22/453 (4%)
Query: 108 VACLGAILFGYHLGVVNGALEYLAKDL------GIAEN-------TVLQGWIVSSLLAGA 154
+A +G+ FGY+ GV+N A E + KD +EN T L V+ G
Sbjct: 16 IATIGSFQFGYNTGVIN-APETIIKDFLNYTLEEKSENLPTEVLLTSLWSLSVAIFSVGG 74
Query: 155 TVGSFTGGSLADKFGRTRT-FQLDAVPLAAGAFL--CATAQSVQTMIIGRVLAGIGIGIS 211
+GSF+ G ++FGR + ++ + +A G + C AQSV+ +I+GR++ G+ G+
Sbjct: 75 MIGSFSVGLFVNRFGRRNSMLMVNLLAVAGGCLMGFCKIAQSVEMLILGRLIIGLFCGLC 134
Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP-LAGNPLWWRTMFGLAAIP 270
+ VP+YI EISPT +RGA G++NQL I +GIL A + GL + G W + G IP
Sbjct: 135 TGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLKVIMGTEELWPLLLGFTIIP 194
Query: 271 SILLALGMGLSPESPRWLFQQGKKSEAEKSI-QTLYGKERVSEVMLDLTN-AGQGSAEPE 328
++L + + PESPR+L K+ E K I Q L+G + VS+ + ++ + + + + E +
Sbjct: 195 AVLQSAALPFCPESPRFLLINRKEEENAKEILQRLWGTQDVSQDIQEMKDESARMAQEKQ 254
Query: 329 AGWFDLFSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA 387
+LF SR Y + + + L L QQL+GINAV YYST +F+ G+E + A+ G
Sbjct: 255 VTVLELFRSRSYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVEEPIYATIGAGVV 314
Query: 388 NVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 447
N T V+ L++R GR+ L GMA +L+++S K + + + +++V
Sbjct: 315 NTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKDNYNWMSFVCIGAILVFV 374
Query: 448 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYL 507
F +G GP+P ++ E+F+ R A+A++ +W SNF++GL F S G + V++
Sbjct: 375 AFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAFYLG-AYVFI 433
Query: 508 GFATVCLLAVLYIAVNVVETKGRSLEEIERALN 540
F ++ +++ V ET+GR+ EEI RA
Sbjct: 434 IFTGFLIVFLVFTFFKVPETRGRTFEEITRAFE 466
|
Facilitative glucose transporter. Probably a neuronal glucose transporter. Canis familiaris (taxid: 9615) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 169/483 (34%), Positives = 244/483 (50%), Gaps = 19/483 (3%)
Query: 67 FRSTVKPRSVKAQASAGDIEEATPFKPQAKK---SSGVVLPFVGVACLGAILFGYHLGVV 123
F + SVK + D E+ TP+K +K + ++ F +G++ G+ G
Sbjct: 16 FVRQLSTDSVKTKTEY-DNEDGTPYKSTTQKLFLWTQLLAAFA--VSVGSMNVGFSSGYT 72
Query: 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183
+ A+ + L I + + W+ + A VG GG L + GR +T AVP
Sbjct: 73 SPAVLTMNITLDITKEEIT--WVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTI 130
Query: 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI 243
G L A A +V + GRV+ G+ +GI S P+YI E E+RGALG + F GI
Sbjct: 131 GWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGI 190
Query: 244 LAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQT 303
L A + G L W F AAIP L M L+PE+PRW + + EA KS++
Sbjct: 191 LLAFLVGSYLD----WSNLAFFGAAIPVPFFLL-MILTPETPRWYVSKARVQEARKSLRW 245
Query: 304 LYGKE-RVSEVMLDLTNAGQGSAEPEAGWF-DLFSSRYWKVVSVGAALFLFQQLAGINAV 361
L GK + + M DLT + S F LFS RY V + L LFQQL GINAV
Sbjct: 246 LRGKNVNIEKEMRDLTISQTESDRTGGNAFKQLFSKRYLPAVMISLGLMLFQQLTGINAV 305
Query: 362 VYYSTSVFRSVGIESDVA-ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASML 420
++Y+ S+F+ G D AS ++G N T +A+ L+DR GRK LL S M ++L
Sbjct: 306 IFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLL 365
Query: 421 LLSLSFTWK---VLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL 477
L F K + G L + V+YVL FS+G GP+P L+L EI S+IR A +L
Sbjct: 366 ALGAYFYLKQNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASL 425
Query: 478 SLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIER 537
+ G +W F++ F ++++ + FA +C+ +L++ V ETKG+SLEEIE
Sbjct: 426 ATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEM 485
Query: 538 ALN 540
L
Sbjct: 486 KLT 488
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|Q5R608|GTR3_PONAB Solute carrier family 2, facilitated glucose transporter member 3 OS=Pongo abelii GN=SLC2A3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 251/456 (55%), Gaps = 24/456 (5%)
Query: 106 VGVACLGAILFGYHLGVVNGA----LEYLAKDLGIAENTVLQGWIVSSLLA--------G 153
+ VA +G+ FGY+ GV+N E++ K L N +++SL + G
Sbjct: 14 ITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSLWSLSVAIFSVG 73
Query: 154 ATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGAF--LCATAQSVQTMIIGRVLAGIGIGI 210
+GSF+ G ++FGR + + + + + G F LC A+SV+ +I+GR++ G+ G+
Sbjct: 74 GMIGSFSVGLFVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEMLILGRLIIGLFCGL 133
Query: 211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP-LAGNPLWWRTMFGLAAI 269
+ VP+YI EISPT +RGA G++NQL I VGIL A + GL + G+ W + G +
Sbjct: 134 CTGFVPMYIGEISPTALRGAFGTLNQLGIVVGILVAQIFGLEFILGSEELWPLLLGFTIL 193
Query: 270 PSILLALGMGLSPESPRWLFQQGKKSEAEKSI-QTLYGKERVSEVMLDLTN-AGQGSAEP 327
P+IL + + PESPR+L K+ E K I Q L+G + VS+ + ++ + + + S E
Sbjct: 194 PTILQSAALPFCPESPRFLLINRKEEENAKQILQRLWGTQDVSQDIQEMKDESARMSQEK 253
Query: 328 EAGWFDLFS-SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGA 386
+ +LF S Y + + + L L QQL+GINAV YYST +F+ G++ + A+ G
Sbjct: 254 QVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVQEPIYATIGAGV 313
Query: 387 ANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSG-TLAVLGTVL 445
N T V+ L++R GR+ L GMA L+++S K Y+G + +G +L
Sbjct: 314 VNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLK--DNYNGMSFVCIGAIL 371
Query: 446 -YVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIST 504
+V F +G GP+P ++ E+F+ R A+A++ +W SNF++GL F S + G +
Sbjct: 372 VFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLG-AY 430
Query: 505 VYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 540
V++ F + + + V ET+GR+ E+I RA
Sbjct: 431 VFIIFTGFLITFLAFTFFKVPETRGRTFEDITRAFE 466
|
Facilitative glucose transporter. Probably a neuronal glucose transporter. Pongo abelii (taxid: 9601) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| 225452080 | 542 | PREDICTED: plastidic glucose transporter | 0.985 | 0.987 | 0.800 | 0.0 | |
| 9858106 | 555 | putative glucose translocator [Mesembrya | 0.988 | 0.967 | 0.775 | 0.0 | |
| 297807643 | 545 | GLT1 [Arabidopsis lyrata subsp. lyrata] | 0.987 | 0.983 | 0.791 | 0.0 | |
| 8347250 | 515 | hexose transporter [Arabidopsis thaliana | 0.933 | 0.984 | 0.824 | 0.0 | |
| 398806194 | 547 | hexose transporter [Camellia sinensis] | 0.990 | 0.983 | 0.791 | 0.0 | |
| 18417892 | 546 | Plastidic glucose transporter 4 [Arabido | 0.987 | 0.981 | 0.793 | 0.0 | |
| 15625046 | 544 | hexose transporter pGlT [Olea europaea] | 0.987 | 0.985 | 0.779 | 0.0 | |
| 222423889 | 546 | AT5G16150 [Arabidopsis thaliana] | 0.987 | 0.981 | 0.791 | 0.0 | |
| 356545878 | 547 | PREDICTED: plastidic glucose transporter | 0.983 | 0.976 | 0.769 | 0.0 | |
| 8347244 | 534 | hexose transporter [Nicotiana tabacum] | 0.906 | 0.921 | 0.823 | 0.0 |
| >gi|225452080|ref|XP_002284052.1| PREDICTED: plastidic glucose transporter 4 [Vitis vinifera] gi|51574116|gb|AAU07980.1| plastid hexose transporter [Vitis vinifera] gi|296087262|emb|CBI33636.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/546 (80%), Positives = 466/546 (85%), Gaps = 11/546 (2%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNS-----ICMRDMGMK 55
MQ STYA K S+ + +NRR F S N T+N + I MG +
Sbjct: 1 MQTSTYAAKGSIGLELQNRRVFPRFGE-FRKQSSCVKNLRVTNNTTSSGLRIGSVVMGAE 59
Query: 56 LTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
R +E +FR PRSVKA+AS GDIE+ PQ K SSG VLPFVGVACLGAIL
Sbjct: 60 FGRPRTRIEAVFR----PRSVKARASGGDIEDVDVTAPQGK-SSGTVLPFVGVACLGAIL 114
Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
FGYHLGVVNGALEYL+KDLGIAEN VLQGW+VS+LLAGAT+GSFTGG+LADKFGRTRTFQ
Sbjct: 115 FGYHLGVVNGALEYLSKDLGIAENAVLQGWVVSTLLAGATLGSFTGGALADKFGRTRTFQ 174
Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
LDA+PLA GAFLCATAQSVQTMIIGR+LAGIGIGISSA+VPLYISEISPTEIRGALGSVN
Sbjct: 175 LDAIPLAVGAFLCATAQSVQTMIIGRLLAGIGIGISSALVPLYISEISPTEIRGALGSVN 234
Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS 295
QLFIC+GILAALVAGLPLA NPLWWRTMFG+A +PSILLALGM SPESPRWLFQQGK S
Sbjct: 235 QLFICIGILAALVAGLPLARNPLWWRTMFGVAVVPSILLALGMAFSPESPRWLFQQGKIS 294
Query: 296 EAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355
EAEKSI+TL GKERV+EVM DL QGS+E EAGWFDLFS RYWKVVSVGAALFLFQQL
Sbjct: 295 EAEKSIKTLNGKERVAEVMNDLREGLQGSSEQEAGWFDLFSGRYWKVVSVGAALFLFQQL 354
Query: 356 AGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGM 415
AGINAVVYYSTSVFRS GI SDVAASALVGA+NVFGTA+ASSLMDRQGRK+LL SF GM
Sbjct: 355 AGINAVVYYSTSVFRSAGIASDVAASALVGASNVFGTAIASSLMDRQGRKSLLITSFAGM 414
Query: 416 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 475
AASM+LLS SFTW LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV
Sbjct: 415 AASMMLLSFSFTWSALAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 474
Query: 476 ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEI 535
ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGF+ VCLLAVLYIA NVVETKGRSLEEI
Sbjct: 475 ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFSAVCLLAVLYIAGNVVETKGRSLEEI 534
Query: 536 ERALNP 541
ERALNP
Sbjct: 535 ERALNP 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9858106|gb|AAG00995.1|AF286906_1 putative glucose translocator [Mesembryanthemum crystallinum] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/561 (77%), Positives = 479/561 (85%), Gaps = 24/561 (4%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAG---FANTRSV---------------ALNCNFT 42
MQAS+ +K ++ F+ +NRRR + AG F N+ + + +C T
Sbjct: 1 MQASSCLVKGNLGFEVQNRRRGVLAVAGLGGFKNSSPILSSNLRFVNGVINKKSSSCKLT 60
Query: 43 SNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVV 102
++ S+ M G L R G++ +F+ST K RSVKAQA++GD E+ P K Q K SS V
Sbjct: 61 TSGSVLM---GAGLAR--MGLDHVFQSTAKYRSVKAQAASGDYEDPAPVKFQGK-SSASV 114
Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
LP+VGVACLGAILFGYHLGVVNGALEYL+ DLGIA NTVLQGW+VS LLAGATVGSFTGG
Sbjct: 115 LPYVGVACLGAILFGYHLGVVNGALEYLSPDLGIAGNTVLQGWVVSILLAGATVGSFTGG 174
Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
SLADKFGRTRTFQLDA+PLA GA+LCATAQSVQTM+IGR+L GIGIGISSA+VPLYISEI
Sbjct: 175 SLADKFGRTRTFQLDAIPLAIGAYLCATAQSVQTMMIGRLLCGIGIGISSALVPLYISEI 234
Query: 223 SPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282
SPTEIRGALGSVNQLFIC+GILAALVAGLPLAGNPLWWRTMFG+AAIPS+LLALGM + P
Sbjct: 235 SPTEIRGALGSVNQLFICIGILAALVAGLPLAGNPLWWRTMFGIAAIPSVLLALGMAMCP 294
Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342
ESPRWLFQQGK +EAEK+ LYGKERV EVM DL + QGS+EPEAGWFDLFSSRY KV
Sbjct: 295 ESPRWLFQQGKVAEAEKASAALYGKERVPEVMNDLKASVQGSSEPEAGWFDLFSSRYRKV 354
Query: 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQ 402
VSVGAALFLFQQ+AGINAVVYYSTSVFRS GIESDVAASALVGAANVFGTA+ASSLMDRQ
Sbjct: 355 VSVGAALFLFQQMAGINAVVYYSTSVFRSAGIESDVAASALVGAANVFGTAIASSLMDRQ 414
Query: 403 GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLL 462
GRK+LL SF+GMAASMLLLSLSFTW VLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLL
Sbjct: 415 GRKSLLITSFSGMAASMLLLSLSFTWPVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLL 474
Query: 463 PEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 522
PEIFASRIRAKAVALSLGMHW SNFVIGLYFLSVV KFGIS VYLGFA+VC+LAVLYIA
Sbjct: 475 PEIFASRIRAKAVALSLGMHWASNFVIGLYFLSVVTKFGISRVYLGFASVCMLAVLYIAG 534
Query: 523 NVVETKGRSLEEIERALNPVV 543
NVVETKGRSLEEIERAL+P V
Sbjct: 535 NVVETKGRSLEEIERALSPAV 555
|
Source: Mesembryanthemum crystallinum Species: Mesembryanthemum crystallinum Genus: Mesembryanthemum Family: Aizoaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807643|ref|XP_002871705.1| GLT1 [Arabidopsis lyrata subsp. lyrata] gi|297317542|gb|EFH47964.1| GLT1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/546 (79%), Positives = 476/546 (87%), Gaps = 10/546 (1%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F R R A FA+ +S+A + S + MG K
Sbjct: 1 MQSSTYAVKGNAAFAFHRRTLSSNRSATSTGIRFADKKSIATTGPLYCSGS---KAMGAK 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAI 114
L RA G++++ S+VK RSV+AQAS+GD EEA P + + K+S G VLPFVGVACLGAI
Sbjct: 58 LARAENGIQSVMSFSSVKARSVRAQASSGDAEEAIPLRSEGKRS-GTVLPFVGVACLGAI 116
Query: 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174
LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVS+LLAGATVGSFTGG+LADKFGRTRTF
Sbjct: 117 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSALLAGATVGSFTGGALADKFGRTRTF 176
Query: 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV 234
QLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGSV
Sbjct: 177 QLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSV 236
Query: 235 NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKK 294
NQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 NQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKV 296
Query: 295 SEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 354
S+AEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQQ
Sbjct: 297 SQAEKAIKTLYGKERVVELVRDLSTSGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 356
Query: 355 LAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414
LAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFGTAVASSLMD+ GRK+LL SF G
Sbjct: 357 LAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGG 416
Query: 415 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 474
MA SMLLLSLSFTWK LA YSGTLAV+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA
Sbjct: 417 MALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 476
Query: 475 VALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 534
VALSLGMHWISNFVIGLYFLSVV +FGIS+VYLGFA VC+LAVLYIA NVVETKGRSLEE
Sbjct: 477 VALSLGMHWISNFVIGLYFLSVVTRFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEE 536
Query: 535 IERALN 540
IE AL
Sbjct: 537 IELALT 542
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8347250|gb|AAF74569.1|AF215855_1 hexose transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/512 (82%), Positives = 457/512 (89%), Gaps = 5/512 (0%)
Query: 29 FANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFR-STVKPRSVKAQASAGDIEE 87
FA +S+A + S MG L RA G++++ S+VK RSV+AQAS+GD EE
Sbjct: 1 FAGYKSLATTGPLYCSGS---EAMGATLARADNGIQSVMSFSSVKARSVRAQASSGDEEE 57
Query: 88 ATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 147
A P + + K SSG VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV
Sbjct: 58 AIPLRSEGK-SSGTVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 116
Query: 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207
SSLLAGATVGSFTGG+LADKFGRTRTFQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIG
Sbjct: 117 SSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIG 176
Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267
IGISSAIVPLYISEISPTEIRGALGSVNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A
Sbjct: 177 IGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVA 236
Query: 268 AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP 327
IPS+LLA+GM SPESPRWL QQGK SEAEK+I+TLYGKERV E++ DL+ +GQGS+EP
Sbjct: 237 VIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEP 296
Query: 328 EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA 387
EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS GI+SDVAASALVGA+
Sbjct: 297 EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGAS 356
Query: 388 NVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 447
NV GTAVASSLMD+ GRK+LL SF GM SMLLLSLSFTWK LA YSGTLAV+GTVLYV
Sbjct: 357 NVAGTAVASSLMDKMGRKSLLLTSFGGMVHSMLLLSLSFTWKALAAYSGTLAVVGTVLYV 416
Query: 448 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYL 507
LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV KFGIS+VYL
Sbjct: 417 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYL 476
Query: 508 GFATVCLLAVLYIAVNVVETKGRSLEEIERAL 539
GFA VC+LAVLYIA NVVETKGRSLEEIE AL
Sbjct: 477 GFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|398806194|gb|AFP19448.1| hexose transporter [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/552 (79%), Positives = 477/552 (86%), Gaps = 14/552 (2%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAL---NCNFTSNNSICMRDMG---- 53
MQA+TYA K S FD + RR GF+ R L N T +S +G
Sbjct: 1 MQAATYASKGSXRFDNQKRR----FLPGFSELRKRGLGFNNLRMTERSSCFGLRLGSVAM 56
Query: 54 -MKLTRATQGVETLFRSTVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACL 111
+L R GV+ +FRS+ K RSV+AQASA GD+E+ P K QAK SSG VLP VGVACL
Sbjct: 57 EAELGRVRTGVDRVFRSSAKARSVRAQASADGDMEDLVPAKIQAK-SSGNVLPXVGVACL 115
Query: 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171
GAILFGYHLGVVNGALEYL+KDLGIAENTV+QGWIVS+LLAGATVGSFTGG+LADKFGRT
Sbjct: 116 GAILFGYHLGVVNGALEYLSKDLGIAENTVIQGWIVSTLLAGATVGSFTGGALADKFGRT 175
Query: 172 RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL 231
+TFQLDA+PLA GAFLC TAQSVQTMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG L
Sbjct: 176 KTFQLDAIPLAVGAFLCTTAQSVQTMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTL 235
Query: 232 GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQ 291
GSVNQLFIC+GILAALVAGLPLAGNPLWWR+MFG+A IPS+LLALGM SPESPRWL+QQ
Sbjct: 236 GSVNQLFICIGILAALVAGLPLAGNPLWWRSMFGIAMIPSVLLALGMAFSPESPRWLYQQ 295
Query: 292 GKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFL 351
GK S+AE SI+TL+GKE+V+EVM DL+ A QGS+EPEAGWFDLFSSRYWKV SVGAALFL
Sbjct: 296 GKISQAEMSIKTLFGKEKVAEVMNDLSAASQGSSEPEAGWFDLFSSRYWKVDSVGAALFL 355
Query: 352 FQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFS 411
FQQLAGINAVVYYSTSVFRSVGI SDVAASALVGA+NVFGT +ASSLMD+QGRK+LL S
Sbjct: 356 FQQLAGINAVVYYSTSVFRSVGIASDVAASALVGASNVFGTTIASSLMDKQGRKSLLMTS 415
Query: 412 FTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 471
F GMAASMLLLSLS TW VLAPY+G LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR
Sbjct: 416 FAGMAASMLLLSLSLTWTVLAPYAGILAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 475
Query: 472 AKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRS 531
AKAVALSLGMHWISNFVIGLYFLSVVNKFGIS+VYLGF+ VCLLAV+YIA NVVETKGRS
Sbjct: 476 AKAVALSLGMHWISNFVIGLYFLSVVNKFGISSVYLGFSMVCLLAVIYIASNVVETKGRS 535
Query: 532 LEEIERALNPVV 543
LEEIERALNP +
Sbjct: 536 LEEIERALNPAI 547
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417892|ref|NP_568328.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|30685706|ref|NP_850828.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|42573381|ref|NP_974787.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|117940139|sp|Q56ZZ7.2|PLST4_ARATH RecName: Full=Plastidic glucose transporter 4; Short=AtpGlcT gi|16648753|gb|AAL25568.1| AT5g16150/T21H19_70 [Arabidopsis thaliana] gi|20259506|gb|AAM13873.1| putative sugar transporter [Arabidopsis thaliana] gi|21436467|gb|AAM51434.1| putative sugar transporter [Arabidopsis thaliana] gi|332004870|gb|AED92253.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004871|gb|AED92254.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004872|gb|AED92255.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/547 (79%), Positives = 473/547 (86%), Gaps = 11/547 (2%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFT 413
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFGTAVASSLMD+ GRK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 414 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 473
GMA SMLLLSLSFTWK LA YSGTLAV+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 474 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 533
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 534 EIERALN 540
EIE AL
Sbjct: 537 EIELALT 543
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15625046|gb|AAK62031.1| hexose transporter pGlT [Olea europaea] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/545 (77%), Positives = 463/545 (84%), Gaps = 9/545 (1%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
MQ ST+A+K ++C +N R N A++ + S C G+ L
Sbjct: 1 MQVSTHAVKGNLCLGLQNLRPLPSSRELRENNLGFAVSELRMTKRSSCF---GIGLDSIA 57
Query: 61 QGV-----ETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
G ++++ S K RSV+AQA GD+E+ P K Q K SSG VLP+VGVACLGAIL
Sbjct: 58 MGARGNWPKSVYGSLAKARSVRAQAYEGDVEDVAPAKIQVK-SSGTVLPYVGVACLGAIL 116
Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
FGYHLGVVNGALEYLAKDLGIAEN VLQGW+VS+LLAGATVGSFTGGSLADKFGRT+TF
Sbjct: 117 FGYHLGVVNGALEYLAKDLGIAENAVLQGWVVSTLLAGATVGSFTGGSLADKFGRTKTFL 176
Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
LDA+PLA GAFLCATAQ+++TMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG LGSVN
Sbjct: 177 LDAIPLAVGAFLCATAQNIETMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTLGSVN 236
Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS 295
QLFIC+GILAALVAGLPLAGNPLWWRTMFG+A IPSILLALGM SPESPRWL+QQGK S
Sbjct: 237 QLFICIGILAALVAGLPLAGNPLWWRTMFGVAIIPSILLALGMAFSPESPRWLYQQGKIS 296
Query: 296 EAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355
EAE SI+ L GKERV+EVM DL A QGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQQL
Sbjct: 297 EAEVSIRKLNGKERVAEVMSDLDAAAQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 356
Query: 356 AGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGM 415
AGINAVVYYSTSVFRS GI SDVAASALVGAANVFGT +ASSLMD+QGRK+LL SF GM
Sbjct: 357 AGINAVVYYSTSVFRSAGITSDVAASALVGAANVFGTTIASSLMDKQGRKSLLLTSFAGM 416
Query: 416 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 475
A SMLLLSL+FTWK LAPY+GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV
Sbjct: 417 AVSMLLLSLTFTWKTLAPYAGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 476
Query: 476 ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEI 535
ALSLGMHWISNFVIGLYFLSVV KFGISTVYLGFA+VCLLAV+YIA NVVETKGRSLEEI
Sbjct: 477 ALSLGMHWISNFVIGLYFLSVVTKFGISTVYLGFASVCLLAVMYIAGNVVETKGRSLEEI 536
Query: 536 ERALN 540
ERAL
Sbjct: 537 ERALT 541
|
Source: Olea europaea Species: Olea europaea Genus: Olea Family: Oleaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222423889|dbj|BAH19908.1| AT5G16150 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/547 (79%), Positives = 472/547 (86%), Gaps = 11/547 (2%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFT 413
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFGTAVASSLMD+ GRK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 414 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 473
GMA SMLLLSLSFTWK LA YSGTL V+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLVVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 474 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 533
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 534 EIERALN 540
EIE AL
Sbjct: 537 EIELALT 543
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545878|ref|XP_003541360.1| PREDICTED: plastidic glucose transporter 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/550 (76%), Positives = 471/550 (85%), Gaps = 16/550 (2%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAL-----NCNFTSNNSICMRDMG-- 53
MQAST+ ++ + F + RR GF R+ ++ C +N +C +G
Sbjct: 1 MQASTFGVEGA-TFGVQERRGLV----GFGEFRNGSVLRPRRVCMTKNNTDLCGLRLGSV 55
Query: 54 ---MKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVAC 110
+LT A G +F +VKPRSV+ AS G+IE+ P PQ K SSG VLP+VGVAC
Sbjct: 56 TMETELTSARIGFGGIFGPSVKPRSVRVMASDGNIEDVVPATPQGK-SSGNVLPYVGVAC 114
Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
LGAILFGYHLGVVNGALEYLAKDLGI ENTV+QGWIVS+LLAGATVGSFTGGSLAD+FGR
Sbjct: 115 LGAILFGYHLGVVNGALEYLAKDLGITENTVIQGWIVSTLLAGATVGSFTGGSLADQFGR 174
Query: 171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA 230
TRTFQL ++PLA GAFL ATAQSVQ MIIGR+LAGIGIG++SAIVPLYISEISPTEIRGA
Sbjct: 175 TRTFQLASIPLAIGAFLGATAQSVQPMIIGRLLAGIGIGVTSAIVPLYISEISPTEIRGA 234
Query: 231 LGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
LGSVNQLFIC+GIL ALVAGLPLAGNP+WWR+MFG+A +PS+LLALGM +SPESPRWL Q
Sbjct: 235 LGSVNQLFICIGILLALVAGLPLAGNPIWWRSMFGIAIVPSVLLALGMAISPESPRWLVQ 294
Query: 291 QGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALF 350
QGK SEAEK+I+TLYG+ERV+ VM DLT A QGS+EPEAGW DLFSSRYWKVVSVGAALF
Sbjct: 295 QGKISEAEKAIKTLYGQERVAAVMNDLTTASQGSSEPEAGWLDLFSSRYWKVVSVGAALF 354
Query: 351 LFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTF 410
LFQQLAGINAVVYYSTSVFRS GI SDVAASALVGA+NVFGT +ASSLMD+QGRK+LL
Sbjct: 355 LFQQLAGINAVVYYSTSVFRSAGIASDVAASALVGASNVFGTCIASSLMDKQGRKSLLIT 414
Query: 411 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 470
SF+GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI
Sbjct: 415 SFSGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 474
Query: 471 RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 530
RAKAV+LSLG HWISNFVIGLYFLSVVNKFGIS+VYLGF+ VC+LAVLYIA NVVETKGR
Sbjct: 475 RAKAVSLSLGTHWISNFVIGLYFLSVVNKFGISSVYLGFSAVCVLAVLYIAGNVVETKGR 534
Query: 531 SLEEIERALN 540
SLEEIERAL+
Sbjct: 535 SLEEIERALS 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8347244|gb|AAF74566.1|AF215852_1 hexose transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/493 (82%), Positives = 446/493 (90%), Gaps = 1/493 (0%)
Query: 51 DMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVAC 110
MG++L RA + V+++F S+ K RS + +AS GDIE+ATP K Q + SSG VLP+VGVAC
Sbjct: 43 SMGIELGRARKTVQSVFGSSAKARSHRVRASGGDIEDATPLKVQGQ-SSGSVLPYVGVAC 101
Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
LGAILFGYHLGVVNGALEYLAKDLGI ENTV+QGWIVSS+LAGATVGSFTGG+LADKFGR
Sbjct: 102 LGAILFGYHLGVVNGALEYLAKDLGIVENTVIQGWIVSSVLAGATVGSFTGGALADKFGR 161
Query: 171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA 230
T+TF LDA+PLA GAFLC TAQSVQ MIIGR+L GIGIGISSAIVPLYISEISPTEIRG
Sbjct: 162 TKTFVLDAIPLAVGAFLCTTAQSVQAMIIGRLLTGIGIGISSAIVPLYISEISPTEIRGT 221
Query: 231 LGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
LG+VNQLFIC+GIL ALVAGLPL+GNPLWWRTMFG+A IPS+LLALGM SPESPRWLFQ
Sbjct: 222 LGTVNQLFICIGILVALVAGLPLSGNPLWWRTMFGIALIPSVLLALGMAFSPESPRWLFQ 281
Query: 291 QGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALF 350
QG+ SEAE SI+ LYGKERV+EVM DL + QGS+EP+AGW DLFSSRYWKVVS+GAALF
Sbjct: 282 QGRISEAETSIKRLYGKERVAEVMGDLEASAQGSSEPDAGWLDLFSSRYWKVVSIGAALF 341
Query: 351 LFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTF 410
LFQQ AGINAVVYYST+VFRS GI SDVAASALVGAANVFGT VASSLMD+QGRK+LL
Sbjct: 342 LFQQFAGINAVVYYSTAVFRSAGISSDVAASALVGAANVFGTMVASSLMDKQGRKSLLLV 401
Query: 411 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 470
SFTGMAASM+LLSLSFTWKVL PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI
Sbjct: 402 SFTGMAASMMLLSLSFTWKVLTPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 461
Query: 471 RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 530
RAKAVALSLGMHWISNF IGLYFLS+V KFGISTVYLGFA+VCLLAV+YI NVVETKGR
Sbjct: 462 RAKAVALSLGMHWISNFFIGLYFLSIVTKFGISTVYLGFASVCLLAVMYIVGNVVETKGR 521
Query: 531 SLEEIERALNPVV 543
SLE+IER L+P +
Sbjct: 522 SLEDIERELSPAI 534
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| TAIR|locus:2181422 | 546 | PGLCT "plastidic GLC transloca | 0.985 | 0.979 | 0.710 | 3.2e-191 | |
| TAIR|locus:2205548 | 524 | AT1G05030 [Arabidopsis thalian | 0.889 | 0.921 | 0.374 | 3.7e-87 | |
| TAIR|locus:2019554 | 494 | AT1G67300 [Arabidopsis thalian | 0.802 | 0.882 | 0.411 | 1e-84 | |
| TAIR|locus:2017899 | 495 | SGB1 "SUPPRESSOR OF G PROTEIN | 0.799 | 0.876 | 0.394 | 1.4e-80 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.574 | 0.537 | 0.345 | 8.8e-57 | |
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 0.843 | 0.899 | 0.313 | 6.8e-56 | |
| UNIPROTKB|P0AEP1 | 464 | galP "galactose:H+ symporter" | 0.812 | 0.950 | 0.307 | 4.3e-54 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.804 | 0.943 | 0.302 | 1e-52 | |
| UNIPROTKB|E1BML6 | 648 | SLC2A13 "Uncharacterized prote | 0.650 | 0.544 | 0.3 | 9e-52 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.605 | 0.507 | 0.309 | 2.1e-51 |
| TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1853 (657.3 bits), Expect = 3.2e-191, P = 3.2e-191
Identities = 388/546 (71%), Positives = 426/546 (78%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+L VPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GI WWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFT 413
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFGTAVASSLMD+ GRK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 414 GXXXXXXXXXXXFTWKVLAPYSGTLAVLGTVLYVLSFSXXXXXXXXXXXXEIFASRIRAK 473
G FTWK LA YSGTLAV+GTVLYVLSFS EIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 474 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 533
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 534 EIERAL 539
EIE AL
Sbjct: 537 EIELAL 542
|
|
| TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 184/491 (37%), Positives = 277/491 (56%)
Query: 57 TRATQGVETLFRSTVKPRSVKAQASA--GDIEEATPFKPQAKKSSGV----VLPFVGVAC 110
+R FRS+ + + V ++ D E +P P+ K S+ + P V VA
Sbjct: 29 SRKASSFSRFFRSSKRKKRVTTLSTKKPDDDHEISPVPPE-KFSADLGWLSAFPHVSVAS 87
Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
+ LFGYH+GV+NG + +A++LG N++L+G +VS +AGA +GS G L DKFG
Sbjct: 88 MANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGY 147
Query: 171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGA 230
RTFQ+ +PL GA + A A S+ ++ GR L VP+YISE++PT+ RG+
Sbjct: 148 RRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 207
Query: 231 LGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
LG++ Q+ C+GI WWRTM +A++P LLALGM + ESPRWL +
Sbjct: 208 LGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGMQFAVESPRWLCK 267
Query: 291 QGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP-EAGWFDLFSSRYWKVVSVGAAL 349
G+ +A+ I+ ++G V + + D + + S + W +L + +V +G +L
Sbjct: 268 VGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSL 327
Query: 350 FLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLT 409
F+ QQ AGIN V+Y+S+ F++VGI S AS VG N G AS L+D+QGRK LL
Sbjct: 328 FVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASYLIDKQGRKKLLI 387
Query: 410 FSFTGXXXXXXXXXXXFTWKVLAPYSGTLAVLGTVLYVLSFSXXXXXXXXXXXXEIFASR 469
S+ G + + S +L++LGT++Y+ SF+ E+ ++R
Sbjct: 388 GSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNR 447
Query: 470 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKG 529
R K + S +HW+SNF++GL+FL +V K+G+ TVY F +V LLA + + VETKG
Sbjct: 448 TRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKG 507
Query: 530 RSLEEIERALN 540
RSLEEIE +LN
Sbjct: 508 RSLEEIELSLN 518
|
|
| TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 181/440 (41%), Positives = 259/440 (58%)
Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
LP V VA + + LFGYHLGVVN LE ++ DLG + +T+ +G +VS L GA +GS G
Sbjct: 52 LPHVLVATISSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSG 111
Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
+AD FGR R FQ+ A+P+ GAF+ + S+ M++GR L LY++E+
Sbjct: 112 GVADGFGRRRAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEV 171
Query: 223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
SP +RG GS Q+ C+G+ WWR F L+ IP+ LLALGM L
Sbjct: 172 SPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCA 231
Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSA-EPEA-GWFDLFSSRYW 340
ESP+WLF+QGK +EAE + L G V M +L EP+ +L R+
Sbjct: 232 ESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHS 291
Query: 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMD 400
+VV +G+ LF QQL+GINAV Y+S++VF+S G+ SD+ + VG +N+ G+ +A LMD
Sbjct: 292 RVVFIGSTLFALQQLSGINAVFYFSSTVFKSAGVPSDLG-NIFVGVSNLLGSVIAMVLMD 350
Query: 401 RQGRKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGT-LAVLGTVLYVLSFSXXXXXXXX 459
+ GRK LL +SF G T L +S L+V GT+++VL+F+
Sbjct: 351 KVGRKLLLLWSFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPG 410
Query: 460 XXXXEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLY 519
EIF SRIRAKA+A + +HW+ NF +GL FL ++ K G +Y F+T CL+AV++
Sbjct: 411 LLLPEIFPSRIRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMF 470
Query: 520 IAVNVVETKGRSLEEIERAL 539
+ NV+ETKG++L+EIE +L
Sbjct: 471 VKRNVIETKGKTLQEIEISL 490
|
|
| TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 173/439 (39%), Positives = 256/439 (58%)
Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
LP V VA L ++LFGYHLGVVN LE ++ DLG + NT+ +G +VS+ L GA +GS G
Sbjct: 55 LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSG 114
Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
+AD GR R FQL A+P+ GA + A+ +S+ M++GR L LY++E+
Sbjct: 115 LVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEV 174
Query: 223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
SP +RG GS Q+ C+G+ WWR F ++ +P+ +LA+ M L
Sbjct: 175 SPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCV 234
Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342
ESP+WLF++G+ +EAE + L G V M +L + +G A +L R ++V
Sbjct: 235 ESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRV 294
Query: 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQ 402
V +G+ LF QQL+GINAV Y+S++VF+ G+ S +A+ VG N+ G+ VA LMD+
Sbjct: 295 VFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPS-ASANICVGVCNLLGSTVAVVLMDKL 353
Query: 403 GRKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGTL--AVLGTVLYVLSFSXXXXXXXXX 460
GRK LL SF G +T + +P+ GTL +V G +L+VLSF+
Sbjct: 354 GRKVLLIGSFAGMAVSLGLQAIAYT-SLPSPF-GTLFLSVGGMLLFVLSFATGAGPVPSL 411
Query: 461 XXXEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYI 520
EI R+RA A+A+ L +HW+ NF +GL FL ++ + G + F C++AV+++
Sbjct: 412 LLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFV 471
Query: 521 AVNVVETKGRSLEEIERAL 539
NVVETKG+SL+EIE +L
Sbjct: 472 QKNVVETKGKSLQEIEISL 490
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 112/324 (34%), Positives = 162/324 (50%)
Query: 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFT 160
VL A +G +LFGY GV++GAL Y+ D + NT LQ IVS +AGA VG+
Sbjct: 28 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAI 87
Query: 161 GGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYIS 220
GG DK GR + GA + A A + +++GRV PLYIS
Sbjct: 88 GGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYIS 147
Query: 221 EISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGL 280
E SP +IRGAL S N I G WR M G+A IP++L + M
Sbjct: 148 EASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQFVLMFT 207
Query: 281 SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA------GQGSAEPEAGWFDL 334
PESPRWL+++G++ EA+ ++ +Y E V + + L ++ +GS+E + L
Sbjct: 208 LPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSE-KINMIKL 266
Query: 335 FSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA---SALVGAANVF 390
++ + + G L +FQQ GIN V+YYS ++ + G S+ A S + N F
Sbjct: 267 CKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAF 326
Query: 391 GTAVASSLMDRQGRKNLLTFSFTG 414
G+ ++ +DR GRK LL S G
Sbjct: 327 GSIISIYFIDRIGRKKLLIISLFG 350
|
|
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 148/472 (31%), Positives = 231/472 (48%)
Query: 78 AQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA 137
A S+G ++ P + + + +L A +G +LFGY GV++GAL Y+ D +
Sbjct: 8 APGSSGYLD-MFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVV 66
Query: 138 -ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT 196
+++ LQ IVS L GA +G+ GG + D +GR + V AAGA + A A
Sbjct: 67 KQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYV 126
Query: 197 MIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXX 256
+I GR+L P+YI+E SP+E+RG L S N L I G
Sbjct: 127 LISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQV 186
Query: 257 XXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLD 316
WR M G++ +P+++ + M PESPRWLF + +K+EA + + Y R+ + +
Sbjct: 187 PGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDH 246
Query: 317 LTNAGQGSAEPE--AGWFDLFSSRYWKVVSV-GAALFLFQQLAGINAVVYYSTSVFRSVG 373
L+ A + + + G+ D+F S+ ++ + GA L FQQ GIN V+YYS ++ + G
Sbjct: 247 LSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 306
Query: 374 IESDVAA---SALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGXXXXXXXXXXXFTWKV 430
S+ A S +V A N GT V +D GRK L S G F +K
Sbjct: 307 FHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSF-FKQ 365
Query: 431 LAPYS-----GTLAVLGTVLYVLSFSXXXXXXXXXXXXEIFASRIRAKAVALSLGMHWIS 485
S G LAVLG LY++ F+ EI+ + R +S ++WIS
Sbjct: 366 SETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWIS 425
Query: 486 NFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIER 537
N ++ FL++ G +L A + +LAV+++ V V ET+G + E+E+
Sbjct: 426 NLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQ 477
|
|
| UNIPROTKB|P0AEP1 galP "galactose:H+ symporter" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 140/456 (30%), Positives = 228/456 (50%)
Query: 93 PQAKK---SSGVVLPFVG-VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVS 148
P AKK S+ + FV +A L +LFG +GV+ GAL ++A + I +T Q W+VS
Sbjct: 2 PDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT--QEWVVS 59
Query: 149 SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXX 208
S++ GA VG+ G L+ K GR ++ + A+ AG+ A A +V+ +I+ RVL
Sbjct: 60 SMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAV 119
Query: 209 XXXXXXVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAA 268
PLY+SEI+P +IRG++ S+ QL I +GI W R M G+
Sbjct: 120 GVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAW-RWMLGVII 178
Query: 269 IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPE 328
IP+ILL +G+ P+SPRW + + +AE+ + L ++ +E +L + +
Sbjct: 179 IPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRL--RDTSAEAKRELDEIRESLQVKQ 236
Query: 329 AGWFDLF--SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA---ASAL 383
+GW LF +S + + V +G L + QQ G+N ++YY+ +F G + + +
Sbjct: 237 SGWA-LFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVI 295
Query: 384 VGAANVFGTAVASSLMDRQGRKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGTLAVLGT 443
VG NV T +A L+DR GRK LT F + +P + A+
Sbjct: 296 VGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAML 355
Query: 444 VLYVLSFSXXXXXXXXXXXXEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIS 503
+++++ F+ EI + R + S +WI+N ++G FL+++N G +
Sbjct: 356 LMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNA 415
Query: 504 TVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERAL 539
+ +A + +L +L V ETK SLE IER L
Sbjct: 416 NTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNL 451
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 136/450 (30%), Positives = 225/450 (50%)
Query: 95 AKKSSGV-VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAG 153
AKKS V+ F+ A ILFGY GV++GA+ +++++ ++ + G++VS++L G
Sbjct: 11 AKKSHFYWVIAFI--AAFAGILFGYDTGVISGAILFISQEFHLSPQ--MNGFVVSAVLIG 66
Query: 154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXX 213
A +G+ G LAD GR R +DA+ G + + S+ ++IGR++
Sbjct: 67 AFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVGIAIGIASY 126
Query: 214 XVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSIL 273
PLYISEISP RGAL S+NQL + +GI W R+MF IP+ L
Sbjct: 127 SAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFAAGVIPAAL 185
Query: 274 LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG-WF 332
L LGM + P SPRW+F +G + +A ++ L G +E L+ A S + + G W
Sbjct: 186 LLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRA---SLQQQKGDWR 242
Query: 333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD---VAASALVGAANV 389
LFS + + L +FQQ+ GIN V+YY+ ++ + G ++ + A+ +GA V
Sbjct: 243 TLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILATMGIGAVLV 302
Query: 390 FGTAVASSLMDRQGRKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGTLAVLGTVLYVLS 449
T ++ L+D GR+ LL F Y +A ++++
Sbjct: 303 IITIISLPLIDSLGRRPLLFIGVGAMTVSLLVLSWSFKVHGHMDYMRWIAFGSLLVFISG 362
Query: 450 FSXXXXXXXXXXXXEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGF 509
FS EIF R+R ++ +W SN+++ + FL+++ G S + +
Sbjct: 363 FSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWASNWLVTITFLTLIEYLGPSGTFFIY 422
Query: 510 ATVCLLAVLYIAVNVVETKGRSLEEIERAL 539
+ ++ +++I +V ETKG +LE+IE L
Sbjct: 423 FIISVITLIFIYTSVPETKGVTLEQIEENL 452
|
|
| UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 9.0e-52, Sum P(2) = 9.0e-52
Identities = 111/370 (30%), Positives = 177/370 (47%)
Query: 59 ATQGVETLFRSTVKPRSVKAQASAG----DIEEATPFKPQAKKSSGVVLPFVGVACLGAI 114
+T G +L + S++ + G D+E A + Q ++ V + LG
Sbjct: 34 STAGERSLLAAAESSASLQGAGAGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGF 93
Query: 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174
LFGY GVV+GA+ L + L + + + Q +VSS + A V + GG+L FGR
Sbjct: 94 LFGYDTGVVSGAMLLLKRQLSL--DAMWQELLVSSTVGAAAVSALAGGALNGVFGRRAAI 151
Query: 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSV 234
L + AG+ + A A + +T++ GR++ VP+YI+E+SP +RG L ++
Sbjct: 152 LLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTI 211
Query: 235 NQLFICVG-IXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
N LFI G WR M GLAAIP+++ G PESPRWL Q+G+
Sbjct: 212 NTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQ 271
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW------KVVSVGA 347
+A + + + G + + E + N + E E G R + + VG
Sbjct: 272 TQKARRILSQMRGNQTIDEEYDSIKNNIE-EEEKEVGSAGPVICRMLSYPPTRRALIVGC 330
Query: 348 ALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA---SALVGAANVFGTAVASSLMDRQGR 404
L +FQQL+GIN ++YYS ++ + G+E D A +++ N T V L+++ GR
Sbjct: 331 GLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGR 390
Query: 405 KNLLTFSFTG 414
+ L S G
Sbjct: 391 RKLTFGSLAG 400
|
|
| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 106/342 (30%), Positives = 167/342 (48%)
Query: 83 GDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVL 142
GD+E A + Q ++ V + LG LFGY GVV+GA+ L + L + + +
Sbjct: 62 GDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALW 119
Query: 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202
Q +VSS + A V + GG+L FGR L + AG+ + A A + +T++ GR+
Sbjct: 120 QELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRL 179
Query: 203 LXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG-IXXXXXXXXXXXXXXXWWR 261
+ VP+YI+E+SP +RG L ++N LFI G WR
Sbjct: 180 VVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWR 239
Query: 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321
M GLAA+P+++ G PESPRWL Q+G+ +A + + + G + + E + N
Sbjct: 240 YMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNI 299
Query: 322 QGSAEPEAGWFDLFSSRYW------KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIE 375
+ E E G R + + VG L +FQQL+GIN ++YYS ++ + G+E
Sbjct: 300 E-EEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVE 358
Query: 376 SDVAA---SALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414
D A +++ N T V L+++ GR+ L S G
Sbjct: 359 DDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAG 400
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P28568 | GTR3_CHICK | No assigned EC number | 0.3168 | 0.8139 | 0.8911 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3601 | 0.8047 | 0.9562 | yes | no |
| Q56ZZ7 | PLST4_ARATH | No assigned EC number | 0.7934 | 0.9871 | 0.9816 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3199 | 0.8084 | 0.9606 | yes | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3289 | 0.8139 | 0.9525 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | scaffold_601651.1 | annotation not avaliable (545 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Al_scaffold_0003_483 | annotation not avaliable (221 aa) | • | 0.429 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 543 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 9e-98 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-90 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-73 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-22 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-19 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 6e-19 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-15 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-14 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-13 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 8e-13 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-10 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-09 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 2e-07 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-07 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 3e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 7e-06 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-05 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 9e-04 | |
| PRK10504 | 471 | PRK10504, PRK10504, putative transporter; Provisio | 0.002 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.004 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 9e-98
Identities = 162/448 (36%), Positives = 241/448 (53%), Gaps = 18/448 (4%)
Query: 108 VACLGAILFGYHLGVVNGALEYLAKDL---------GIAENTVLQGWIVSSLLAGATVGS 158
VA LG LFGY GV+ L + A +TVL G IVS G +GS
Sbjct: 4 VAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGS 63
Query: 159 FTGGSLADKFGRTRTFQLDAVPLAAGAFL--CATAQSVQTMIIGRVLAGIGIGISSAIVP 216
G L D+FGR ++ + V GA L A +S +I+GRV+ G+G+G S +VP
Sbjct: 64 LFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVP 123
Query: 217 LYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA--GNPLWWRTMFGLAAIPSILL 274
+YISEI+P ++RGALGS+ QL I GIL A + GL L N WR GL +P+ILL
Sbjct: 124 MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILL 183
Query: 275 ALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEV---MLDLTNAGQGSAEPEAGW 331
+G+ PESPRWL +GK EA + L G V + D + +
Sbjct: 184 LIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLE 243
Query: 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG 391
+ + +G L +FQQL GINA+ YYS ++F ++G+ + + +VG N
Sbjct: 244 L-FRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFVF 302
Query: 392 TAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFS 451
T +A L+DR GR+ LL GMA L+L ++ + +G +A++ +L++ F+
Sbjct: 303 TFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFA 362
Query: 452 LGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFAT 511
LG GPVP +++ E+F +R KA+A++ +W++NF+IG F + G V+L FA
Sbjct: 363 LGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY-VFLVFAG 421
Query: 512 VCLLAVLYIAVNVVETKGRSLEEIERAL 539
+ +L +L++ V ETKGR+LEEI+
Sbjct: 422 LLVLFILFVFFFVPETKGRTLEEIDELF 449
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 284 bits (729), Expect = 4e-90
Identities = 167/450 (37%), Positives = 256/450 (56%), Gaps = 22/450 (4%)
Query: 108 VACLGAILFGYHLGVVNGALE------YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTG 161
+A +G ++FGY GV+ GAL + ++ L G +VS L G +G+
Sbjct: 32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFA 91
Query: 162 GSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218
G L+D+FGR ++ + A+ GA L A A SV+ +I+GRVL GIG+GI+SA+VP+Y
Sbjct: 92 GWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMY 151
Query: 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLP--LAGNPLWWRTMFGLAAIPSILLAL 276
+SEI+P +RGAL S+ QL I GIL A G N L WR GL IP+ LL L
Sbjct: 152 LSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211
Query: 277 GMGLSPESPRWLFQQGKKSEAEKSIQTLYG-----KERVSEVMLDLTNAGQGSAEPEAGW 331
G+ PESPRWL +G+ EA KS+ L G KE + E+ L + W
Sbjct: 212 GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSW 271
Query: 332 FDLFSS--RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAA 387
LFSS R + + +G L FQQ GINA++YYS ++F + G+ +D S +VGA
Sbjct: 272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAV 331
Query: 388 NVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKV--LAPYSGTLAVLGTVL 445
N T VA L+DR GR+ LL GMA + +L + V + SG +A++ +L
Sbjct: 332 NFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL 391
Query: 446 YVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTV 505
++ F++G GPVP +++ EIF +R K +++++ +W++NF++G F +++ G+ V
Sbjct: 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451
Query: 506 YLGFATVCLLAVLYIAVNVVETKGRSLEEI 535
++ F + +L ++++ + ETKGR+LEEI
Sbjct: 452 FIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 7e-73
Identities = 146/479 (30%), Positives = 243/479 (50%), Gaps = 49/479 (10%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------AKDLGIAENTVLQGWIVSS 149
+ +S + VA LG +LFGY V++G +E L ++L + L G+ V+S
Sbjct: 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63
Query: 150 LLAGATVGSFTGGSLADKFGRTRT-------FQLDAVPLAAGAFLCATAQS-----VQTM 197
L G +G GG +++FGR + F + A+ A F + V
Sbjct: 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257
+I R++ GIG+G++S + P+YI+EI+P IRG L S NQ I G L +A +
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG 183
Query: 258 --LW-----WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV 310
W WR MF AIP++L + + PE+PR+L +GK+ +AE ++ + G
Sbjct: 184 DASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA 243
Query: 311 SEVMLDLTNA---GQGSAEPEAGWFDLFSSRYWK-VVSVGAALFLFQQLAGINAVVYYST 366
++ + ++ ++ G+ + L + V+ +G L +FQQ GIN V+YY+
Sbjct: 244 TQALQEIKHSLDHGRKTGGK------LLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAP 295
Query: 367 SVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL 424
+F+++G +D+A + +VG N+ T +A +D+ GRK L GMA M L
Sbjct: 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 355
Query: 425 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI 484
+F + G +A+L + YV +F++ GPV +LL EIF + IR KA+A+++ WI
Sbjct: 356 AFYTQA----PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411
Query: 485 SNFVIGLYF------LSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIER 537
+N+ + F +V F Y + + +LA L++ V ETKG++LEE+E
Sbjct: 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
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Length = 479 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 3e-22
Identities = 90/384 (23%), Positives = 159/384 (41%), Gaps = 28/384 (7%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
+ ++ L ++ GY L + A ++ + G+ + V G++ S+ L G G+ G LA
Sbjct: 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLA 76
Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
D+ GR R + + LCA A +V ++I R LAG+G+G + +SE +P
Sbjct: 77 DRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK 136
Query: 226 EIRG-ALGSVNQLFICVGILAALVAG--LPLAGNPLWWRTMFGLAAI-PSILLALGMGLS 281
RG A+G + + + +AG +P+ G WR++F + I P +LL L M
Sbjct: 137 RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG----WRSLFYVGGIAPLLLLLLLMRFL 192
Query: 282 PESPRWLFQQGKKSEAEK--SIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339
PES +L + ++ +I E S + G + +A LF +
Sbjct: 193 PESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA----LFQGKT 248
Query: 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVG--AANVFGTAVASS 397
+ ++V L F L G+ + + + +G +AA+ V G+ +
Sbjct: 249 AR-ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307
Query: 398 LMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPV 457
L DR G + G A +L+ + L G +A F G
Sbjct: 308 LADRLGPRVTALLLLLG-AVFAVLVGSTLFSPTLLLLLGAIAGF--------FVNGGQSG 358
Query: 458 PALLLPEIFASRIRAKAVALSLGM 481
L+ + + IRA V ++G+
Sbjct: 359 LYALMALFYPTAIRATGVGWAIGI 382
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 5e-19
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
+ + LG L G G+++ AL LA+DLG++ + G IVS+ G +GS G L+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58
Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
D+FGR R L + A G+ L A A S+ +++GR L G+G G I+E P
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 226 EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278
+ RG + +G L + G LA + L WR +F + AI +LLAL +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLL 170
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-19
Identities = 95/407 (23%), Positives = 162/407 (39%), Gaps = 32/407 (7%)
Query: 136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ 195
+ E+ S G +GSF G L+D+FGR + L + A L A + +
Sbjct: 122 VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT 181
Query: 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255
++ R+L G+GIG + +E P + R +G++ Q+F +G++ L+ +
Sbjct: 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV--LLPLVAYFI 239
Query: 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQ---TLYGKERVSE 312
WR + ++P+ L L PESPRWL QG+ EA K +Q + GK+ +E
Sbjct: 240 PD--WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE 297
Query: 313 V-MLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS 371
V L L S++ + + DLF + + + L A YY +
Sbjct: 298 VLSLSLEKDL-SSSKKQYSFLDLFRTPNLRKTT-----LCLMMLWFTTAFSYYGLVLDLG 351
Query: 372 VGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVL 431
+ + G + + L+DR GR+ + S ++LLL +
Sbjct: 352 NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF------V 405
Query: 432 APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM----HWISNF 487
L VL A + L E++ + +R V + M IS F
Sbjct: 406 PVDLYFLRTALAVLGK-FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPF 464
Query: 488 VIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 534
++ L + + F + LLA + + + + ETKG L E
Sbjct: 465 LVYLGEKWLFLPLVL------FGGLALLAGI-LTLFLPETKGVPLPE 504
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 83/382 (21%), Positives = 136/382 (35%), Gaps = 42/382 (10%)
Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
L A L G ++ AL YLA+DLGI+ + G ++++ G + G L+D+F
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR 228
GR R + + A G L A S+ +++ RVL G+G G I++ P E R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 229 GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA-LGMGLSPESPRW 287
G + +G + G LA WR F + AI ++L A L L P P
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILALLAAVLAALLLPRPPPE 178
Query: 288 LFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGA 347
+ EA + + V+ + ++
Sbjct: 179 SKRPKPAEEAPAPLVPAWKLLLRDPVLW---------------LLLALLLFGFAFFALLT 223
Query: 348 ALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNL 407
L L+Q++ G++A+ L G G + L DR GR+
Sbjct: 224 YLPLYQEVLGLSAL--------------LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRR 269
Query: 408 LTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLG-AGPVPALLLPEIF 466
L + + + L L L + + L L +L F G P L+ ++
Sbjct: 270 LLLALLLLILAALGL-------ALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLA 322
Query: 467 ASRIRAKAVALSLGMHWISNFV 488
R A L + +
Sbjct: 323 PKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 7e-14
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 20/196 (10%)
Query: 117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176
G + VV L KDL I ++ +G + + G VG+F G LADK GR + +
Sbjct: 180 GVEVFVVGFVLPSAEKDLCIPDSG--KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237
Query: 177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVN 235
AF + Q + R+L+G GIG + IV Y +E E RG L +
Sbjct: 238 CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297
Query: 236 QLFICVGILAALVAG--LPLAGNPLW------------WRTMFGLAAIPSILLALGMGLS 281
++ GI AA +A +P G W WR + A P + +
Sbjct: 298 MFWMIGGIYAAAMAWAIIPHYG---WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354
Query: 282 PESPRWLFQQGKKSEA 297
PESPR+ + GK EA
Sbjct: 355 PESPRFFLENGKHDEA 370
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 81/344 (23%), Positives = 125/344 (36%), Gaps = 25/344 (7%)
Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
TV ++S+ L G+ G D++GR V +AG C A TM I
Sbjct: 46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105
Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPL 258
R++ GIG+G Y+ E P +R + VG ++AA V L +
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165
Query: 259 WWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE-RVSEVMLDL 317
WR +F ++ +P I PE+ W + K+ + LYG E R++ +++ L
Sbjct: 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTL 225
Query: 318 TNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD 377
A SA + W L LF L T + +G+
Sbjct: 226 AAAMVQSAG-----------KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPH 274
Query: 378 VAASALV--GAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435
A+ +V + G V L D GR+ S LL V A
Sbjct: 275 TVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCS--------LLAGQLLIIPVFA-IG 325
Query: 436 GTLAVLGTVLYVLSFSL-GAGPVPALLLPEIFASRIRAKAVALS 478
+AVLG L+ + G + L E F + RA + +
Sbjct: 326 ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-13
Identities = 117/467 (25%), Positives = 180/467 (38%), Gaps = 93/467 (19%)
Query: 142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV-----PLAAGAFLCATAQSVQT 196
+ + S G G G LADK GR R + ++ + +A+G ++ +SV
Sbjct: 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMA 116
Query: 197 MIIG-RVLAGIGIG----ISSAIVPLYISEISPTEIRGAL-GSV--NQLFICVGILA-AL 247
+ R G+GIG +S+ I SE + + RGA+ +V Q F GILA A+
Sbjct: 117 TLCFWRFWLGVGIGGDYPLSAIIT----SEFATKKWRGAMMAAVFAMQGF---GILAGAI 169
Query: 248 VAGLPLAG--NPL-------------------WWRTMFGLAAIPSILLALGMGLSPESPR 286
VA + LAG + L WR + G A+P++L PE+PR
Sbjct: 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR 229
Query: 287 WLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS-RYWK--VV 343
+ K E S + + ++ ++ A P+A W D F+ W+
Sbjct: 230 YTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKH 289
Query: 344 SVGAAL--------FLFQQL--AGINAVVYYSTSVFRSVGIES----DVAASALVGAANV 389
+G A F L I + + YS + E V + A V
Sbjct: 290 LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTV 349
Query: 390 FGTAVASSLMDRQGRK--NLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 447
G V L+D GRK L+ F + L L F + L+ + G LA +YV
Sbjct: 350 PGYWVTVFLVDIIGRKPIQLMGFFILTV----LFFVLGFAYNHLSTH-GFLA-----IYV 399
Query: 448 LS-FSLGAGP------VPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV--- 497
L+ F GP VP E+F +R R+ A +S + FL +
Sbjct: 400 LAQFFANFGPNATTFIVPG----EVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455
Query: 498 -------NKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIER 537
+ V FA L +L+ + + ETKG+SLEE+
Sbjct: 456 DPTKGYPTGIWMGHVLEIFALFMFLGILFTLL-IPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 79/365 (21%), Positives = 122/365 (33%), Gaps = 63/365 (17%)
Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
V G L +A DLG++E G ++++ G +G+ L + R R
Sbjct: 31 VPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88
Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
L A A S +++ R LAG+ G+ +I + + P RG AL V
Sbjct: 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVF----- 143
Query: 241 VGILAALVAGLPLA---GNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEA 297
G+ A V G+PL G WR F A+ ++L L +
Sbjct: 144 TGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLL------------------- 184
Query: 298 EKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAG 357
+ L E + G R V+ A FLF + G
Sbjct: 185 ---WKLLPPSEIS--------GSLPGPLRTLLRLL-----RRPGVLLGLLATFLF--MTG 226
Query: 358 INAVVYYSTSVFRSVGIESDVAAS---ALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414
A+ Y SV S A S G A G + L DR R+ L+ +
Sbjct: 227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALI-AALLL 285
Query: 415 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 474
+A ++L L+ + LA + + + P L + A
Sbjct: 286 LALALLALTFTGASPALA-----------LALLFLWGFAFSPALQGLQTRLARLAPDAAD 334
Query: 475 VALSL 479
+A SL
Sbjct: 335 LAGSL 339
|
Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 93/375 (24%), Positives = 150/375 (40%), Gaps = 89/375 (23%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ-GWIVSSLLAGATVGSFTGGSL 164
+G+ L A+L G L A +A++ G+ V Q GW S+ + G G+ GG L
Sbjct: 17 IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLD---VAQMGWAFSAGILGLLPGALLGGRL 73
Query: 165 ADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYI--- 219
AD+ GR R L G F ATAQ ++++ R+L G+G+G +P I
Sbjct: 74 ADRIGRKRI--LIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG---GALPNLIALT 128
Query: 220 SEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAGNPLWWRTMFGLAAI-PSILLALG 277
SE +RG S+ + G LA+++ LA WR +F + + P +L+ L
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIG--VLAAGDAAWRHIFYVGGVGPLLLVPLL 186
Query: 278 MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSE-------------VMLDLTN----- 319
M PES + G + ++ L+G+ R + V+ L N
Sbjct: 187 MRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSL 246
Query: 320 -AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV 378
GQG + +AG F
Sbjct: 247 LVGQGLSRSQAGL----------------VQIAFN------------------------- 265
Query: 379 AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL--SFTWKVLAPYSG 436
+G A G+ + +LMDR + ++ + G+ AS+ L+ SF +LA ++
Sbjct: 266 -----IGGA--LGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318
Query: 437 TLAVLG--TVLYVLS 449
L V+G +VLY L+
Sbjct: 319 GLFVVGGQSVLYALA 333
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 13/182 (7%)
Query: 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA---SALVGAANVFGTAVASSLMDR 401
+ AL F G ++ Y + V S A +L G + G + L DR
Sbjct: 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR 237
Query: 402 QGRKN-LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPAL 460
GR+ LL A +LLL+L+ + L ++ +L + L
Sbjct: 238 LGRRRLLLLIGLLLAALGLLLLALAPSL--------ALLLVALLLLGFGLGFAFPALLTL 289
Query: 461 LLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYI 520
E+ R A L + + L +++ G V+L A + LLA L +
Sbjct: 290 A-SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
Query: 521 AV 522
+
Sbjct: 349 LL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
+VN A+ +A DLG + + V W+++S + + G LA +FG R F +
Sbjct: 20 IVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF 77
Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
G+ LC A +++ MII RV+ G G G + + I P E RG A+
Sbjct: 78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMA-----IWG 132
Query: 241 VGILAALVAGLPLAG---NPLWWRTMFGLAAIPSI 272
+ +L A G L G WR +F + I
Sbjct: 133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI 167
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 71/341 (20%), Positives = 128/341 (37%), Gaps = 55/341 (16%)
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT--------MIIGRVLAGIG 207
+G+ G D+ GR +T + + + G L S T +++ R++ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL------AGNPLW-W 260
+G LY++E +P RG GS Q+ VG+L A + L L W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 261 RTMFGLAA-IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319
R F ++A + I L L L E+P + Q K + I
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLE-ETPVFEKAQEKHKKKRGPIAETL-------------- 214
Query: 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA 379
+++ K +G L + Y T + +++G+ ++ A
Sbjct: 215 -----------------TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSA 257
Query: 380 ASALVGAANVFG--TAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT 437
L+ + +F ++ +L DR GR+ +L + LL + + S T
Sbjct: 258 LLVLMLSLILFFITIPLSGALSDRIGRRPVL---IIFTVLAALLAVPLLMALLDSG-SFT 313
Query: 438 LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS 478
L + L + GP+ + LPE+F + +R +L+
Sbjct: 314 LFFFLVLGMALIGGMYTGPMGS-FLPELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 81/411 (19%), Positives = 140/411 (34%), Gaps = 48/411 (11%)
Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188
L +DLG+ + G++ S+ G VG F GG L D+FG +T + V G F
Sbjct: 19 MLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIV--IWGVFTG 74
Query: 189 ATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG--IL 244
A + ++ I RVL G + L ++ P R S+ +G I
Sbjct: 75 LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIG 134
Query: 245 AALVAGLPLAGNPLWWRTMFGLAAIPSILLAL----GMGLSPESPRWLFQQGKKSEAEKS 300
LV + + W+ F + + I+ + + P+ +WL +E EK
Sbjct: 135 GPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL------TEEEKY 185
Query: 301 IQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINA 360
I V ++ + G + + L R W G AL F G+
Sbjct: 186 I-------VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVW-----GLALGQFLVNIGLGF 233
Query: 361 VVYYSTSVFRSVGIESDVAAS------ALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414
+ + + S + A +VG + S L R L F+
Sbjct: 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL--LLRRGKSLVFARKT 291
Query: 415 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 474
+ L+LSL Y ++ + F LGAG + L+ + I
Sbjct: 292 AIIAGLVLSLLM---FATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLT 348
Query: 475 VALSLGMHWISNFVIGL---YFLSVVNKFGISTVYLG-FATVCLLAVLYIA 521
L + + V + + F + + + A + L+ L +
Sbjct: 349 GGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 3/177 (1%)
Query: 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFT 160
++ + +A +L + G++ YL + LG++ G ++S G +G+
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALL 230
Query: 161 GGSLADKFGRTRTFQLDAVPLAA-GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYI 219
GG L+D+ GR R L + LAA G L A A S+ +++ +L G G+G + +
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290
Query: 220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
SE++P E RG + F +G + L + LAA+ + L
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 35/141 (24%), Positives = 53/141 (37%)
Query: 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
G +++ G + S G L D+FGR + + A + ++ +II R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263
G G + I++I P E RG + I +G L G LA W
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 264 FGLAAIPSILLALGMGLSPES 284
LA + L L PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Query: 148 SSLLAGATVGSFTGG----SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
+SL++ A + + GG ++ D++GR + V + G C A T+ I R++
Sbjct: 58 ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLV 117
Query: 204 AGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFICVGILAALVAGLPLAGNPLW-WR 261
G+G+ Y+ E P +R A G + F ++AA V L + P+W WR
Sbjct: 118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV---PVWGWR 174
Query: 262 TMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKER 309
+F + +P I+ AL + + PE+ W + K+ + LY E
Sbjct: 175 ALFFIGILP-IIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH 222
|
Length = 496 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG 169
L +L + V NG L Y + N L ++ A +G+ LA +FG
Sbjct: 228 LLLYLLNALAMAVRNGLLLYYFTY--VLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFG 285
Query: 170 RTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
+ RTF L + A G L S+ ++ VLAGIG+G+++ + ++++
Sbjct: 286 KKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADV 340
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 9e-04
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQG-WIVSSLLAGATVGSFTGGSLADK 167
A LG + G+ ++ + + DLG+ T ++G ++ ++ G G G LADK
Sbjct: 23 AWLGYVFDGFDFMLIFYIMYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADK 79
Query: 168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
FGR V + G L A V + + R + G+G+ A Y E P +
Sbjct: 80 FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139
Query: 228 RGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286
+ + +G I+AA +P WR F + +P +L+ +PES
Sbjct: 140 KSKASAFLVSGFGIGNIIAAYF--MPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKE 197
Query: 287 W----LFQQGKKSEAEKSIQTL 304
W L +GK S++ S+ +L
Sbjct: 198 WEEAKLSGKGKHSQSAWSVFSL 219
|
Length = 426 |
| >gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 122 VVNGALEYLAKDLGIAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
+VN AL +A+ LG E+ + + IVS +L A + +G LAD+ G F V
Sbjct: 28 IVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGW-LADRVGVRNIFFTAIVL 84
Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226
G+ CA + ++ +++ RVL G+G + + L + +I P E
Sbjct: 85 FTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE 130
|
Length = 471 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 8/129 (6%)
Query: 333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGT 392
LF +R ++ + L ++YY T V + G+ S + A + G
Sbjct: 217 ALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGLFS--VLLLIGTIAAILGA 274
Query: 393 AVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSL 452
+ L R G+K A ++LL L P S L ++ VL + L
Sbjct: 275 PLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF------LPPGSLWLFLVLVVLAGIGLGL 328
Query: 453 GAGPVPALL 461
A+L
Sbjct: 329 ATLLPWAML 337
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 79/380 (20%), Positives = 126/380 (33%), Gaps = 54/380 (14%)
Query: 158 SFTGGSLADKFGRTRTFQ---LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI 214
S G LADKF + R + L V L L L G I S
Sbjct: 64 SSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPA 123
Query: 215 VPLYISEISPTE----IRGALGSVNQLFICVGI-LAALVAGLPLAGNPLWWRTMFGLAAI 269
I E+ E G L + + I G L + + P A +
Sbjct: 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGL 183
Query: 270 PSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPE 328
+ +A LG+ + P+ +K L+ K + L
Sbjct: 184 VLLAVAVLGLIFAYRLPK--VPAAAPEVFDKKK-YLFPKLLWRNLKL------------- 227
Query: 329 AGWFDLFSSRYWKVVSVGAALFLF-QQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA 387
L S R + +G + F F QLA N Y + V + + AA
Sbjct: 228 -----LRSDRVLWLAIIGLSYFWFISQLAQANFPAYA-----KEVLGLDNTFQVQYLLAA 277
Query: 388 NVFGTAVASSLMDRQGRKN----LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGT 443
+ G + S L R ++ L+ G+A S+ LL P + +LA +
Sbjct: 278 SAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLL----------PTAPSLASVLV 327
Query: 444 VLYVLSFSLGAGPVPALLLPEIFA-SRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGI 502
+ ++ FS G VP L + A + K +A + + + + L ++ + G+
Sbjct: 328 LFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML-LFLALTTLFSGLGL 386
Query: 503 STVYL--GFATVCLLAVLYI 520
S L A V L+ LY
Sbjct: 387 SPAGLFYLIALVTLIGTLYT 406
|
Length = 1146 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.83 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.79 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.71 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.7 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.67 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.56 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.53 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.52 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.5 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.5 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.49 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.46 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.45 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.42 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.4 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.4 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.4 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.4 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.37 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.37 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.37 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.36 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.36 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.35 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.35 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.34 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.33 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.32 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.32 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.31 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.31 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.3 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.29 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.29 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.29 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.29 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.28 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.28 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.28 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.27 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.27 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.27 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.26 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.26 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.26 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.25 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.24 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.24 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.23 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.23 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.22 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.22 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.22 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.21 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.21 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.19 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.18 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.18 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.17 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.17 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.14 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.14 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.13 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.12 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.11 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.1 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.09 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.08 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.07 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.07 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.05 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.03 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.03 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.01 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.01 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.01 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.0 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.99 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.95 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.94 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.91 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.89 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.89 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.88 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.85 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.84 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.81 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.78 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.76 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.73 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.73 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.67 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.67 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.65 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.65 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.62 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.61 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.61 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.59 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.56 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.56 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.5 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.5 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.48 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.38 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.38 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.37 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.35 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.24 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.24 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.21 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.14 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.09 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.09 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.09 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.03 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.91 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.9 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.88 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.57 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.56 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.54 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.53 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.51 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.27 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.72 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.55 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.55 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.26 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.19 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.03 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.86 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.8 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.72 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.2 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.19 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.19 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 93.99 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.74 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.3 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 90.28 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 89.73 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 89.17 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 87.45 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 87.28 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.2 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 86.89 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.61 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 83.2 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 82.3 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 81.78 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=355.92 Aligned_cols=419 Identities=22% Similarity=0.234 Sum_probs=318.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhh
Q 009108 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (543)
.+..|.++++++++.+.++++...++.++|.+.+++|++..+. +++.+++.++.+++++++|+++||+|||+++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3456677777888888899999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC---
Q 009108 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG--- 255 (543)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~--- 255 (543)
++++++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++..+++.+|.++++.++..+..
T Consensus 240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876644331
Q ss_pred ---------CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhh----HHHH---HHHHH
Q 009108 256 ---------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV----SEVM---LDLTN 319 (543)
Q Consensus 256 ---------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~ 319 (543)
...+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+.. .... ...+.
T Consensus 320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 1247999999998888887777888999999999999999998888887665421 0000 00110
Q ss_pred hc--------cCCCCc----------------ccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc---
Q 009108 320 AG--------QGSAEP----------------EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--- 372 (543)
Q Consensus 320 ~~--------~~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 372 (543)
.. +..... ..+++++++++..+..++..+.+ +.....++.+..|.|.+++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~w-f~~~~~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW-FTLSFGYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 01355667666655555554444 444455777888888664331
Q ss_pred ---------------------------------------CC-----C---------------------------------
Q 009108 373 ---------------------------------------GI-----E--------------------------------- 375 (543)
Q Consensus 373 ---------------------------------------~~-----~--------------------------------- 375 (543)
|+ .
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00 0
Q ss_pred -------------------------------c------hhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 009108 376 -------------------------------S------DVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS 418 (543)
Q Consensus 376 -------------------------------~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 418 (543)
. ......+..++.+++.+++|+++||+|||+++..+.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0 011244556888999999999999999999999988888888
Q ss_pred HHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 419 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
++++.+.. +....++..++++++ ..+..+....+++|++|++.|++++|+.+....+|++++|++.+.+.+
T Consensus 639 ~ll~~~~~--------s~~~ll~~~~l~g~~-~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 639 CFFLSFGN--------SESAMIALLCLFGGL-SIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHc--------cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766531 112222223333333 333455667789999999999999999999999999999999998877
Q ss_pred hhccccchhhhhHHHHHHHHhhheecccCCCCC
Q 009108 499 KFGISTVYLGFATVCLLAVLYIAVNVVETKGRS 531 (543)
Q Consensus 499 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (543)
. +...+|++.+++.++++++.+ ++||++++.
T Consensus 710 ~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 710 I-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 5 345677777777777666554 458887754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=324.53 Aligned_cols=440 Identities=33% Similarity=0.596 Sum_probs=367.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHH--------HHcC--CCcchh--hHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 009108 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLA--------KDLG--IAENTV--LQGWIVSSLLAGATVGSFTGGSLADKF 168 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~~--~~g~~~s~~~l~~~i~~~~~g~l~dr~ 168 (543)
+........+++.+-.+++...+++..+.+. +.+| .++++. ..+.+.+++.+|.++|+++.|+++||+
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~ 87 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF 87 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556666888888888888765544 3445 333322 468899999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHH
Q 009108 169 GRTRTFQLDAVPLAAGAFLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA 245 (543)
Q Consensus 169 Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 245 (543)
|||..+.++.++..++.+++.+ .++++.++++|++.|+..|.......-++.|..|.+.||....+...+..+|.++
T Consensus 88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll 167 (485)
T KOG0569|consen 88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL 167 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence 9999999999988888777665 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc-cCCCCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHh-cCChHHHHHHHHHHhCchhhHHHHHHH---HHh
Q 009108 246 ALVAGLP-LAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ-QGKKSEAEKSIQTLYGKERVSEVMLDL---TNA 320 (543)
Q Consensus 246 ~~~~~~~-l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 320 (543)
+..++.. +..+...|++.+.+..+++++..+...++||+|+|+.. +++.+++++.++.+++..+.+++.+.. .++
T Consensus 168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~ 247 (485)
T KOG0569|consen 168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE 247 (485)
T ss_pred HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 9777654 33344679999999999999999999999999999988 788899999999999887655444332 223
Q ss_pred ccCCCCcccchhhhhccchhH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHH
Q 009108 321 GQGSAEPEAGWFDLFSSRYWK-VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASS 397 (543)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 397 (543)
++.+++++.+++++++++..+ ...+.+.+....++.+.+.+.+|...++++.|++.... .....++..++..+++.+
T Consensus 248 ~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~ 327 (485)
T KOG0569|consen 248 EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPF 327 (485)
T ss_pred hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344778899999986655 45677778888899999999999999999999887744 677788899999999999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHH
Q 009108 398 LMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLA-PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 476 (543)
Q Consensus 398 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 476 (543)
+.||.|||++++.+..++.+..+++.......... .+..+..+.+.+++...+..|.+|+.+.+.+|++|++.|+.+.+
T Consensus 328 lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 328 LIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 99999999999999999988888877665543322 12233456778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCCCHHHHHHhcCC
Q 009108 477 LSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALNP 541 (543)
Q Consensus 477 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (543)
+...+..+..++....+..+.+..|. ..|+++.+.+++..+..++.+||+|+|+.+|+.+++++
T Consensus 408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 99999999999999999999999996 88888999999999999999999999999998887664
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=334.40 Aligned_cols=431 Identities=33% Similarity=0.558 Sum_probs=319.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHc--------CCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccch
Q 009108 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDL--------GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 173 (543)
....+.++.++.+.++++...+++..|.++++| +.+..+. +++.+++.++..++++++|+++||+|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 445566667888999999999999999999988 7777777 999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHH
Q 009108 174 FQLDAVPLAAGAFLCATA------------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV 241 (543)
Q Consensus 174 ~~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 241 (543)
++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++...+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCC-------CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHH
Q 009108 242 GILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVM 314 (543)
Q Consensus 242 G~~~~~~~~~~l~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (543)
|.++++++++.+.. ...+||+.|++.+++.++..+..+++||+|+++..+++.++..+..++.......+...
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQAL 247 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHH
Confidence 99988877654421 23689999999888887777777778999998877766666555555444332222211
Q ss_pred HHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCch--hHHHHHHHHHHHHHH
Q 009108 315 LDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGT 392 (543)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 392 (543)
.+.......+..+ ....+. ..............+.....+....++.|.+.++.|.+.. .......++..+++.
T Consensus 248 ~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~ 323 (479)
T PRK10077 248 QEIKHSLDHGRKT---GGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFT 323 (479)
T ss_pred HHHHHHHHHhhhh---hhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 1111110000000 011111 1111122222223333344455667788888888877654 334455677888999
Q ss_pred HHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhh
Q 009108 393 AVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRA 472 (543)
Q Consensus 393 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 472 (543)
++.++++||+|||+.++.+..+.+++.+++...... ...........++++.++.....+..+.++.|.+|++.|+
T Consensus 324 ~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 399 (479)
T PRK10077 324 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399 (479)
T ss_pred HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence 999999999999999999998888887776543211 1112233334445555555555677778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH------HhhccccchhhhhHHHHHHHHhhheecccCCCCCHHHHHHhcCCC
Q 009108 473 KAVALSLGMHWISNFVIGLYFLSVV------NKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALNPV 542 (543)
Q Consensus 473 ~~~g~~~~~~~~g~~~~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (543)
+++|+.+.+.+++.++++.+.+.+. +..++...|.+.+++++++.++.+++.+|+|+++.+|+++++++.
T Consensus 400 ~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE 475 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence 9999999999999999877766444 567777888888888888877777788999999999988876653
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=338.31 Aligned_cols=431 Identities=21% Similarity=0.272 Sum_probs=308.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHc-----CCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccch
Q 009108 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-----GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 173 (543)
.+..+.++.++.++.+.++++...++...|.+.+++ +.+..+. +++.+.+.+++.++++++|+++||+|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVS--AAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 344556777788889999999999999999887753 2233344 899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHH
Q 009108 174 FQLDAVPLAAGAFLCATAQS------VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (543)
Q Consensus 174 ~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 247 (543)
+.++++++.++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++......+|.++++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998866 789999999999999999999999999999999999999999999999998888
Q ss_pred HhhcccCC----------------------CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChH-HHHHHHHHH
Q 009108 248 VAGLPLAG----------------------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS-EAEKSIQTL 304 (543)
Q Consensus 248 ~~~~~l~~----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~ 304 (543)
.++..+.. ...+||+.|.+.++++++..+..+++||+|+|+..+++.+ ++.+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 77654321 1247999999988888887777888999999998776654 344444444
Q ss_pred hCchhhHHHHHHHHHhccCCCCcccchhhhhccc---hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchh---
Q 009108 305 YGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR---YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV--- 378 (543)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 378 (543)
...+..++ .++.++.++++++.+.+++++++++ ..++..+.....++.....++....+.|.++++.|++...
T Consensus 249 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~ 327 (502)
T TIGR00887 249 LQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN 327 (502)
T ss_pred hccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence 32211110 0000000001111223577777642 2222233222222222223445556677777777765321
Q ss_pred ----------H-HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHH
Q 009108 379 ----------A-ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 447 (543)
Q Consensus 379 ----------~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (543)
. ......++.+++.++.+++.||+|||+.++.+..+.+++++++.+..... ..........++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~ 402 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-----STHGFLAIYVLAQ 402 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHH
Confidence 0 12333456677889999999999999998888877777766655432100 0111112222222
Q ss_pred HHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh----------ccccchhhhhHHHHHHH
Q 009108 448 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF----------GISTVYLGFATVCLLAV 517 (543)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~----------g~~~~~~~~~~~~~~~~ 517 (543)
..+..+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.. ++...|.+++++++++.
T Consensus 403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (502)
T TIGR00887 403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI 482 (502)
T ss_pred HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH
Confidence 23344566677778899999999999999999999999999999999998843 34456777887777776
Q ss_pred HhhheecccCCCCCHHHHHHh
Q 009108 518 LYIAVNVVETKGRSLEEIERA 538 (543)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~ 538 (543)
+. .++.||+++++.||+++|
T Consensus 483 i~-~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 483 LF-TLLIPETKGKSLEELSGE 502 (502)
T ss_pred HH-heEeccCCCCCHHhhhCC
Confidence 54 467799999998887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=325.78 Aligned_cols=431 Identities=37% Similarity=0.644 Sum_probs=318.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCC--------cchhhHHHHHHHHHHHHHHHHHhhHhhhhhhccc
Q 009108 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA--------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 171 (543)
++.+....++.+..+...++...+.+..+.+..+++.+ ..+. +++.+++.++..++++++|+++||+|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW--GLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH--HHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 34455555666677788888888899999999998887 5566 9999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHH
Q 009108 172 RTFQLDAVPLAAGAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV 248 (543)
Q Consensus 172 ~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 248 (543)
++++++.+++.++.+++.+. .+++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999988654 345689999999999999999999999999999999999999999999999999999
Q ss_pred hh---cccCCCCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHH----HHH-HHh
Q 009108 249 AG---LPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVM----LDL-TNA 320 (543)
Q Consensus 249 ~~---~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~ 320 (543)
++ ....+. .+||+.|++.++..++..+..+++||+|++...+++.++..+...+....+..+... ... ...
T Consensus 182 ~~~~~~~~~~~-~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 182 FGSGKVSLNNT-LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHhhcCCCC-ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 98 655444 799999999777777766677778999887666655554444333322211110000 000 000
Q ss_pred ccCCCCcccchhhhhccc--hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHH
Q 009108 321 GQGSAEPEAGWFDLFSSR--YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVAS 396 (543)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g 396 (543)
..+.+..+..+.++++.. ..+..++...+..+..........++.+.+.++.|++.... ......++.+++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 000111111244444322 23344444444444444445667778888888888776433 55566788889999999
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccc--cccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHH
Q 009108 397 SLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLA--PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 474 (543)
Q Consensus 397 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 474 (543)
++.||++||+.+..+..+.+++++++.+........ .......+....++..+++.+..+....+..|.+|++.|+++
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 420 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHH
Confidence 999999999999888777777766665322111100 001233344455555666666667777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCCCHH
Q 009108 475 VALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 533 (543)
Q Consensus 475 ~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (543)
+|+.+...++|++++|.+.+.+.++.|+...|++.+++++++.++.+++.+|+++++.+
T Consensus 421 ~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 99999999999999999999999999999999999999888888877778888776654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=302.86 Aligned_cols=405 Identities=17% Similarity=0.127 Sum_probs=303.9
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchh
Q 009108 95 AKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174 (543)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~ 174 (543)
.++.++.++.++..++++....++.+..++.+.|.+.++.++|.+|. |++.+++.++|.++-.+.|.++||.++|+.+
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm 97 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFM 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence 34455667788888899999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhh--cc
Q 009108 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LP 252 (543)
Q Consensus 175 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~ 252 (543)
.+++++.++.+++++++++.+.+.++.++.|+.+|..+|++...+++|++++|||+..++++.+-++|..+.|++. ++
T Consensus 98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~ 177 (448)
T COG2271 98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF 177 (448)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888887 77
Q ss_pred cCCCCCchHHHHHHhHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCC---CCcc
Q 009108 253 LAGNPLWWRTMFGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGS---AEPE 328 (543)
Q Consensus 253 l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 328 (543)
+..+ .+||..|++.++++++..+..++ .+|+|+..--.. .++ .+++.. +.+++++++ ..++
T Consensus 178 ~~~~-~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-ie~-------~~~d~~------e~~~~~~~~~~ls~~~ 242 (448)
T COG2271 178 FAFH-GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-IEE-------YRGDPL------EIYEEEKENEGLTAWQ 242 (448)
T ss_pred HHhc-cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-HHH-------hhcCch------hhhhhhccCCCccHHH
Confidence 7655 69999999999999887665554 577775211100 000 000000 000000000 0112
Q ss_pred cchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCch--hHHHHHHHHHHHHHHHHHHHhhhcc--CC
Q 009108 329 AGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGTAVASSLMDRQ--GR 404 (543)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~--g~ 404 (543)
.-++-+++||..|.+.++..+....-++...+.+.|+.. ..+++.. ......+-.++++|.+++|+++||+ ||
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e---~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr 319 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSE---VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR 319 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc
Confidence 234557788888888888777777655555555555444 2445444 4467778899999999999999995 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHH
Q 009108 405 KNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI 484 (543)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 484 (543)
|....+.+.+....+++.... .+.........++...+++..+...+.-....|..|++..|++.|+...+.++
T Consensus 320 R~p~~~i~~~~i~~~~~~~w~------~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl 393 (448)
T COG2271 320 RGPMALIFMLLITASLVLYWL------APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYL 393 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHH
Confidence 665544443333333222221 11122333333333333333344444455678999999999999999999999
Q ss_pred -HHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecc
Q 009108 485 -SNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 485 -g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
|.+.+....|.+.|.+||...|.++.+.++++.++.....+
T Consensus 394 ~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 394 IGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999988888888776655444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=312.48 Aligned_cols=439 Identities=40% Similarity=0.686 Sum_probs=354.8
Q ss_pred hHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHcCCCcch-----hhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhh
Q 009108 103 LPFVGVACLGAILFGYH--LGVVNGALEYLAKDLGIAENT-----VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~s~~~-----~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~ 175 (543)
........+..+..+++ .+..+++...+.++...+... .+.+|+.+++.++..++++++|+++|++|||+.++
T Consensus 44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~ 123 (513)
T KOG0254|consen 44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL 123 (513)
T ss_pred HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444455566666665 556677777777754222111 12389999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC
Q 009108 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (543)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 255 (543)
++.+++.++.+++++++|+++++++|++.|+|.|........+++|..|++.||...+..+....+|..++..++....+
T Consensus 124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~ 203 (513)
T KOG0254|consen 124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK 203 (513)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999776665543
Q ss_pred CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhC--chhhHHHHHHHHHhc---cCCCCcccc
Q 009108 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYG--KERVSEVMLDLTNAG---QGSAEPEAG 330 (543)
Q Consensus 256 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~ 330 (543)
...+||..+.+..+++++..+..+++||+|+|+.++++.+++++.+..+++ ..+.+.+....+... ....+.+..
T Consensus 204 ~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
T KOG0254|consen 204 VYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKAS 283 (513)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccccc
Confidence 214899999999999998888888889999999999999999999998887 333333333333111 111222335
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHhhhccCChhHHH
Q 009108 331 WFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD-VAASALVGAANVFGTAVASSLMDRQGRKNLLT 409 (543)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 409 (543)
+.+++++...++..++..+..+.++.+++...+|.+.+++..+.+.. .......++..+++.+++.++.||+|||+.++
T Consensus 284 ~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll 363 (513)
T KOG0254|consen 284 WGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLL 363 (513)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 77777766777888899999999999999999999999999888766 55667777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc----ccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHH
Q 009108 410 FSFTGMAASMLLLSLSFTWKVL----APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 485 (543)
.+...+.+++++++........ .....+..+...+++...+..+..++.+.+.+|.+|.+.|+.+.++...+..+.
T Consensus 364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~ 443 (513)
T KOG0254|consen 364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW 443 (513)
T ss_pred HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence 9999999999988876554322 223345667778888888899999999999999999999999999999999998
Q ss_pred HHHHHHhhHHHHHhhccccchhhhhHHHHHHHH-hhheecccCCCCCHHHHHHhcCC
Q 009108 486 NFVIGLYFLSVVNKFGISTVYLGFATVCLLAVL-YIAVNVVETKGRSLEEIERALNP 541 (543)
Q Consensus 486 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 541 (543)
..+....+-.+.+..+....|..+++++.+..+ ..+++.||+|+++.+|+++.+++
T Consensus 444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 887776666666655545666677777766666 68889999999999999887654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=287.57 Aligned_cols=373 Identities=20% Similarity=0.202 Sum_probs=292.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
+..+..+.++.|..+....+...++|++++|+|+|..+. |++.|+|.+++.++.|+...+.||+.||++++..+.++.
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 455666788889999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|..+|.++.+. .|||+
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-~GWR~ 168 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-FGWRA 168 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-hhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877 99999
Q ss_pred HHHHhHHHHHHHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 263 MFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
.|++.++++++..+.. ..+| |+...++ ++. +..+..+++|++..+
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-~~~-------------------------------~~~~~~~~l~~p~v~ 214 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP--PSEISGS-LPG-------------------------------PLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CccCCCC-CCc-------------------------------chhHHHHHhcCchHH
Confidence 9999999998866554 4457 2100000 000 111124566677766
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 419 (543)
...+...+.+. +.+..+.|.-|.+.+..|++.... ....++++.++|..++|++.|| +.|+.+.....+.++..
T Consensus 215 ~~l~~t~l~~~---g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~ 290 (394)
T COG2814 215 LGLLATFLFMT---GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL 290 (394)
T ss_pred HHHHHHHHHHc---chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence 66555554444 334455555565555567766544 7778899999999999999999 88888888877777777
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
+.+.+... +.+..+....++++....... .......+.. ++.+..+.+++....|+|..+|..+.|.++|+
T Consensus 291 l~l~~~~~-------~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~ 361 (394)
T COG2814 291 LALTFTGA-------SPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA 361 (394)
T ss_pred HHHHHhcc-------hHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76655411 222233333333332222111 1222334433 46699999999999999999999999999999
Q ss_pred hccccchhhhhHHHHHHHHhhheecc
Q 009108 500 FGISTVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 500 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
.|+....++.+.+.+++.++.+...+
T Consensus 362 ~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 362 LGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888888888776655444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=306.61 Aligned_cols=395 Identities=16% Similarity=0.190 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchh--hHHH--HHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTV--LQGW--IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~g~--~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
.+....++.+.+++|...++...|.+.++++.+.++. ..+. +.++.++++.++++++|+++||+|||+++.+++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4556678899999999999999999999997554332 1112 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHH--------HHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcc
Q 009108 181 LAAGAFLCATAQSVQT--------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (543)
Q Consensus 181 ~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 252 (543)
++++++++++++|+++ ++++|+++|++.|+.++....++.|++|+++|+++.++...+..+|..+++.+...
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 89999999999999999999999999999999999999998888888877755433
Q ss_pred cC----C---CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCC
Q 009108 253 LA----G---NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSA 325 (543)
Q Consensus 253 l~----~---~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (543)
+. + ...|||+.|++.+++.++..++...+||+|++...+++.++..+ +...+
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~~~~ 235 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EGLQD 235 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------ccccc
Confidence 21 1 13799999999877666555555667999886432211100000 00001
Q ss_pred CcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhcc
Q 009108 326 EPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQ 402 (543)
Q Consensus 326 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~ 402 (543)
+++.++++++++ .++.........++ ....++.+..|.|.+++ ..+.+.... ......++.+++.++.|+++||+
T Consensus 236 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 313 (490)
T PRK10642 236 GPKVSFKEIATK-HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF 313 (490)
T ss_pred cccCCHHHHHHH-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123356666654 22222222222222 22334555667777664 457665433 44455677888999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHH
Q 009108 403 GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMH 482 (543)
Q Consensus 403 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 482 (543)
|||+.+..+.++..++...+..... ...........++.+.+.+... .....+..|.+|++.|++++|+.+...
T Consensus 314 grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~~ 387 (490)
T PRK10642 314 GRRPFVILGSVALFVLAIPAFILIN-----SNVIGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIRYSALAAAFNIS 387 (490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccchHHHHHHHHHH
Confidence 9999887776544333222111111 0111222222333333222222 233446778999999999999877778
Q ss_pred HHHHHHHHHhhHHHHHhhc-cccchhhhhHHHHHHHHhhheecccCCC
Q 009108 483 WISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAVNVVETKG 529 (543)
Q Consensus 483 ~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (543)
.+++.++|.+.+.+.+..+ +..++.+..+.++++.+..+ +.||+++
T Consensus 388 ~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~ 434 (490)
T PRK10642 388 VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccC
Confidence 8888899999999988665 44455555555555544433 3466544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=298.05 Aligned_cols=392 Identities=17% Similarity=0.207 Sum_probs=279.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
+..+..+.+..+.++++.....+..|.+.+++|+++.+. +++.+++.+++.+++++.|+++||+|||+++.++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 444566677888889999999999999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++.++++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+. .+||+
T Consensus 95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-~~w~~ 173 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-YGWRA 173 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-CCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877755 79999
Q ss_pred HHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHH
Q 009108 263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (543)
.|++..+..++........||++++..++.+.+ .+ ..+...+..+..++++++++.++.
T Consensus 174 ~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 232 (426)
T PRK12307 174 AFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------GK---------HSQSAWSVFSLSMKGLFNRAQFPL 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------cc---------ccccchhhhhHHHHHHHhhchHHH
Confidence 998865444333322223455543321110000 00 000000011224567777777665
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHH
Q 009108 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASML 420 (543)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 420 (543)
........+. .+.....+..+.|.+.++.+.+.... ......++.+++.++.|++.||++||+.+..+.++..+..+
T Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 311 (426)
T PRK12307 233 TLCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIF 311 (426)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4443332222 22223334556677777777765533 45566788899999999999999999988877766655544
Q ss_pred HHHHHHhhcccccccchhHHHHHHHHHHHhh-cCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 421 LLSLSFTWKVLAPYSGTLAVLGTVLYVLSFS-LGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
.+.... ......+...+++.++. .+..+....++.|.+|++.||+++|+.+...++++.++|.+.|.+.+.
T Consensus 312 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 312 PLFRIP--------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred HHHHHc--------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 433220 11112222233333222 223344445778999999999999999999999999999999999999
Q ss_pred hccccc-hhhhhHHHHHHHHhhheecccC
Q 009108 500 FGISTV-YLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 500 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
.|+... +.+.++.+.++..+.....+++
T Consensus 384 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 384 MGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 886543 3333333333333333334443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=309.86 Aligned_cols=397 Identities=12% Similarity=0.029 Sum_probs=275.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhH
Q 009108 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (543)
+..+.++.++++..+..++++..+++..|.+.+|+|++..+. |++.+++.+++.+++++.|+++||+|||+++..+++
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 345666777788888888899999999999999999999998 999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccC
Q 009108 180 PLAAGAFLCAT-----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (543)
Q Consensus 180 ~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 254 (543)
+++++.++.++ +++++.+++.|+++|++.+...+....+++||+|+++|++++|++..+.++|.++++++..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88887776665 5899999999999999999999999999999999999999999999999999999988876554
Q ss_pred CC--CCchHHHHHHhHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCc-ccc
Q 009108 255 GN--PLWWRTMFGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP-EAG 330 (543)
Q Consensus 255 ~~--~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 330 (543)
.. ..+||..|.+.+++.++..+..++ .+++|+..... +.++ . ..+....+ +...+.++.. ...
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~~~~~------~~~~~~~~~~~~~~ 249 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEPISEE------DKETESTDMTKWQI 249 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCccchh------hhccccccCcHHHH
Confidence 32 136999998888887765554443 46665421100 0000 0 00000000 0000000000 011
Q ss_pred h-hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChh
Q 009108 331 W-FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKN 406 (543)
Q Consensus 331 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~ 406 (543)
+ +..++++.++...+...+... .+.....|.|.+++ ..|++.... ......++.+++.++.|+++||+++|+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~ 325 (467)
T PRK09556 250 FVEYVLKNPVIWLLCFANIFLYI----VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR 325 (467)
T ss_pred HHHHHHcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 1 225667666655444333322 23445667776664 467776544 455567889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHH-H
Q 009108 407 LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI-S 485 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g 485 (543)
.......+..++...+..... .+.....+..++++.+ ..+..........|.+|++.+|++.|+.+...++ |
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g 398 (467)
T PRK09556 326 ALVACIALALIIFTLGVYQHA------TSEYMYLASLFALGFL-VFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFG 398 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHH-HhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHh
Confidence 766554433333222222100 1112222222222222 1122222223566999999999999999999997 7
Q ss_pred HHHHHHhhHHHHH------------hhccccchhhhhHHHHHHHHhhhe
Q 009108 486 NFVIGLYFLSVVN------------KFGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 486 ~~~~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
++++|.+.|.+.| ..||+..|.+..++.+++.++.++
T Consensus 399 ~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 399 DSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999 577888898887777777655443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=298.36 Aligned_cols=391 Identities=15% Similarity=0.115 Sum_probs=270.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH
Q 009108 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (543)
+|.++.++++..+.++++...++...|.+.+|+|++.++. |++.+++.+++.+++++.|+++||+|||+++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 4556667777888899999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC-----C
Q 009108 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-----N 256 (543)
Q Consensus 182 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-----~ 256 (543)
+++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|.++++++++++.+ .
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999998999999999999999999999999999999999887653 2
Q ss_pred CCchHHHHHHhHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHHHH-HHhCchhhHHHHHHHHHhccC-CCCcccchhh
Q 009108 257 PLWWRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQ-TLYGKERVSEVMLDLTNAGQG-SAEPEAGWFD 333 (543)
Q Consensus 257 ~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 333 (543)
..|||+.|++.+++.++..+ ..+++||+|+.. +.-.++..+... ........ ..+.+...+. ....+..+++
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 238 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT---LEQPEGAFAHAAMPQRSMLRE 238 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc---ccccccccccccccHHHHHHH
Confidence 36899999998888776544 445568887521 000011111111 00000000 0000000000 0000112333
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc--CCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHH-
Q 009108 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--GIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLL- 408 (543)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~- 408 (543)
++ ++.++...+ ..+.....+..+..|.|.++++. +.+.. ........++.+++.++.|+++||+++|+..
T Consensus 239 ~~-~~~~~~~~~----~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~ 313 (412)
T TIGR02332 239 IF-TPAIMLYTL----AYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHT 313 (412)
T ss_pred hc-ChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHH
Confidence 33 233333222 22223334566777888888774 44433 3356677888999999999999999977653
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHH
Q 009108 409 TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFV 488 (543)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 488 (543)
.....+..++. ++... . ...........+...+.. ...+.......|.+|++.|++++|+.+...++|+++
T Consensus 314 ~~~~~~~~~~~-~~~~~-~------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~ 384 (412)
T TIGR02332 314 ALPYLFAAAGW-LLASA-T------DHNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL 384 (412)
T ss_pred HHHHHHHHHHH-HHHHh-c------CCHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh
Confidence 33333333322 22211 0 011111212222222221 122333345567889999999999999999999999
Q ss_pred HHHhhHHHHHhhc-cccchhhhhHHH
Q 009108 489 IGLYFLSVVNKFG-ISTVYLGFATVC 513 (543)
Q Consensus 489 ~~~~~g~~~~~~g-~~~~~~~~~~~~ 513 (543)
+|.+.|.+.|..| |...+.+.+++.
T Consensus 385 ~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 385 SPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999886 777777665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=313.38 Aligned_cols=388 Identities=22% Similarity=0.295 Sum_probs=289.7
Q ss_pred hhHHHHHHHcCCC---cchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHH
Q 009108 125 GALEYLAKDLGIA---ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR 201 (543)
Q Consensus 125 ~~~~~i~~~~~~s---~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r 201 (543)
+..|.+.+|+|++ ..+. +++.+++.+++.++++++|+++||+|||++++++.++.+++.++++++++++.++++|
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4678889999998 6666 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
++.|++.+...+....++.|++|+++|+++.++...+..+|.+++++++..+. +||+.|++.+++.++..+..+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999887663 39999999999888877777788
Q ss_pred CCChhHHHhcCChHHHHHHHHHHhCchhhH--HHHHHHH-HhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhh
Q 009108 282 PESPRWLFQQGKKSEAEKSIQTLYGKERVS--EVMLDLT-NAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGI 358 (543)
Q Consensus 282 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (543)
||+|+|+..+++.+++.+.+++..+.+... .+..... .++...++++.+++++++++.++...+.....++.....+
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888877777666554332211 1110110 1111111224578889998888776665554444322222
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchh
Q 009108 359 NAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTL 438 (543)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (543)
.... ......+.+. .......++..+++.++.+++.||+|||+.+..+.++.+++++++.+... ...+.
T Consensus 344 ~~~~----~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~------~~~~~ 412 (505)
T TIGR00898 344 YGLV----LDLGNLGGNI-YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV------DLYFL 412 (505)
T ss_pred HHHh----ccccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC------CchHH
Confidence 2222 2223333332 23445567788899999999999999999998888887777766654311 11122
Q ss_pred HHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHH
Q 009108 439 AVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVL 518 (543)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 518 (543)
.....++...+ .....+..+.+..|.+|++.|++++|+.+....+|++++|.+.+ .+..++..++.+++++.+++.+
T Consensus 413 ~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 413 RTALAVLGKFG-ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHH
Confidence 22222222222 22334556668899999999999999999999999999999988 4455666777777777777766
Q ss_pred hhheecccCCCCCHH
Q 009108 519 YIAVNVVETKGRSLE 533 (543)
Q Consensus 519 ~~~~~~~~~~~~~~~ 533 (543)
+. ++.||+++++.+
T Consensus 490 ~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 490 LT-LFLPETKGVPLP 503 (505)
T ss_pred HH-HcCcCCCCCCCC
Confidence 54 456888877654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=300.65 Aligned_cols=396 Identities=14% Similarity=0.139 Sum_probs=276.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
+.+...+++..+...++...++..+|.+.+++|++..+. |++.+++.+++.+++++.|+++||+|||+++.++.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 344555667777777777788889999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++.++++++++++.+++.|++.|++.|..++....++.|++++++|++++++.+.+.++|..+++.+++++.+. .+||+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~ 178 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-YGWRY 178 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888765 79999
Q ss_pred HHHHhHHHHHHHH-HHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhh-----hhc
Q 009108 263 MFGLAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD-----LFS 336 (543)
Q Consensus 263 ~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~ 336 (543)
.|++.+++.++.. +..++++|+|++.......+...+. .+ .. ++.++++.++++ .++
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~-------------~~---~~~~~~~~~~~~~~~~~~~~ 241 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-LE-------------LA---QQQEGAGLSRKEILTKYVLL 241 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-cc-------------cc---hhccccCCChhhhHHHHHhc
Confidence 9999888776544 3444567776532111000000000 00 00 000001111222 444
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhcc--CChhHHH-H
Q 009108 337 SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQ--GRKNLLT-F 410 (543)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~ 410 (543)
++..+...+....... .+..+..|.|.++ ++.|++.... ......++.++++++.|++.||+ ++|+... .
T Consensus 242 ~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~ 317 (434)
T PRK11663 242 NPYIWLLSFSYVLVYV----VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLI 317 (434)
T ss_pred ChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHH
Confidence 5555544433332222 2445556666666 4457765543 55667788999999999999998 3333322 2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhh-cCcccccccccccccChhhhhHHHHHHHHHHHHHHHHH
Q 009108 411 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFS-LGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVI 489 (543)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 489 (543)
......+....+... . . ....... ..+++.++. .+..........|.+|++.+++++|+.++..++|++++
T Consensus 318 ~~~~~~~~~~~~~~~-~-----~-~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 389 (434)
T PRK11663 318 FAAGILLSVGSLWLM-P-----F-ASYVMQA-ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALS 389 (434)
T ss_pred HHHHHHHHHHHHHHc-c-----c-ccHHHHH-HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHh
Confidence 111111121111111 0 0 1111111 122222221 11222233466899999999999999999999999999
Q ss_pred HHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCC
Q 009108 490 GLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 530 (543)
Q Consensus 490 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (543)
|.+.|.+.|+.|+...|.+.+++++++++..+...++++++
T Consensus 390 p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 390 GYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred cccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999998888888777665555544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=294.05 Aligned_cols=376 Identities=21% Similarity=0.278 Sum_probs=277.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhH
Q 009108 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (543)
++.|.++.++++..+.++++....+...|.+.+++|.++++. +++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 466778888888999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 009108 180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (543)
Q Consensus 180 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 259 (543)
+.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~ 167 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-AA 167 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777655 78
Q ss_pred hHHHHHHhHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccc
Q 009108 260 WRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR 338 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (543)
||+.|++.+++.++..+ ...++||+|++..++++.++..+. .+.+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 217 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV------------------------------LRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh------------------------------HHHHhhhh
Confidence 99999988876655444 444568877643222111110000 01111111
Q ss_pred ---hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHH
Q 009108 339 ---YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFT 413 (543)
Q Consensus 339 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 413 (543)
..+...+.. +...........+.|.+.++.+.+... .......++.+++.++.|++.||+++|+.+..+..
T Consensus 218 ~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 293 (406)
T PRK11551 218 RATATLLLWISY----FFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYA 293 (406)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111111111 111222344556677777777776553 35566778899999999999999999998877665
Q ss_pred HHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhh
Q 009108 414 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYF 493 (543)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 493 (543)
...++++.+... .+.+...+..++.+.+. .+..+....+..|.+|++.|+++.|+.+...++|..++|.+.
T Consensus 294 ~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 294 GILASLAALAAA--------PSFAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHHHHHHHHHhc--------CcHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 555554444321 01122222222333222 233455566888999999999999999999999999999999
Q ss_pred HHHHHhhc-cccchhhhhHHHHHHHHhhh
Q 009108 494 LSVVNKFG-ISTVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 494 g~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 521 (543)
|.+.++.+ +...+.....+.+++.++.+
T Consensus 365 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 365 GQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99998765 33444445445544444443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=291.93 Aligned_cols=371 Identities=18% Similarity=0.147 Sum_probs=268.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
|..+..+.+..+..........+.+|.+.+++|.+.++. |++.+.+.+++.++++++|+++||+|||+++..+.++++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 333444444445544444455677899999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++++++++++|+++++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|.+++.+.+. .+||+
T Consensus 86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-~gw~~ 164 (390)
T PRK03545 86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-LGWRT 164 (390)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hcHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999888755 79999
Q ss_pred HHHHhHHHHHHHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 263 MFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
.|++.+++.++..+.. .++||.++ + +++. ..+.+++++++.++
T Consensus 165 ~f~~~~~~~~l~~~~~~~~~~~~~~----~-~~~~-------------------------------~~~~~~~~~~~~~~ 208 (390)
T PRK03545 165 TFLAIGGGALITLLLLIKLLPLLPS----E-HSGS-------------------------------LKSLPLLFRRPALV 208 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC----C-Ccch-------------------------------HHHHHHHHhCcHHH
Confidence 9999988877655443 33455432 0 0000 01123456666655
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 419 (543)
.......+..... +....+..+++.+..+.+.... ......++.++++++.+++.||+++|... .+..+..++.
T Consensus 209 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 209 SLYLLTVVVVTAH---FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHH
Confidence 4443333222221 1222222333333356655433 55667788999999999999999987643 4444333333
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
..+.... .+.+...+...+.+.+.. ...+.....+.+..| +.+++++|+.+...++|..+||.+.|.+.|+
T Consensus 285 ~~l~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~ 355 (390)
T PRK03545 285 LLLLPAA-------NSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH 355 (390)
T ss_pred HHHHHHh-------chHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322210 112223333344444332 233334446667766 5789999999999999999999999999999
Q ss_pred hccccchhhhhHHHHHHHHhhheecc
Q 009108 500 FGISTVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 500 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
.|++..|.+.+++.+++.++.+...+
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 356 LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999988888887776655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=289.03 Aligned_cols=375 Identities=14% Similarity=0.107 Sum_probs=271.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
|.....++++.+.... ....++.+|.+++|+|+|.++. |++.+++.+++.+++++.|+++||+|||+++..++++++
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 9 FMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred HHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 4444444444444333 3566889999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.+...+||+
T Consensus 86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999997 7799999999999999999999998887765458999
Q ss_pred HHHHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 263 MFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
.+.+.++..++..+..++. ++.|+ +++ +++.+.++.++++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------------------------------~~~~~~~~~l~~~~~~ 208 (393)
T PRK09705 165 TLAWWALPAVVALFAWWWQSAREVA----SSH--------------------------------KTTTTPVRVVFTPRAW 208 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc----ccc--------------------------------CCCcCCcccccCHhHH
Confidence 9877666554433332222 11111 000 0001112344455444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 419 (543)
...+...+.. ..+.....+.|.++++.+.+.... ......++.++++++.+++.||+++|+....+..+.+++.
T Consensus 209 ~l~~~~~~~~----~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 209 TLGVYFGLIN----GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 4333322222 234555666777777777766533 6667788999999999999999999998888877766666
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCccccccccccccc-ChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIF-ASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
+++.... . .... ...++.+.+.+. ..+.......+.. |++.+++++|+.+...++++.++|.+.|++.|
T Consensus 285 ~~~~~~~------~-~~~~--~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~ 354 (393)
T PRK09705 285 CGFIWLP------L-QLPV--LWAMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS 354 (393)
T ss_pred HHHHHcc------c-hHHH--HHHHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443210 0 1111 112233333332 2233333444555 56789999999999999999999999999999
Q ss_pred hhc-cccchhhhhHHHHHHHHhhheecccCCCCC
Q 009108 499 KFG-ISTVYLGFATVCLLAVLYIAVNVVETKGRS 531 (543)
Q Consensus 499 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (543)
..| +...|.+.++++++..++.+.+.+|++.+.
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 355 ISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 987 666677777777777666666777776554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=288.70 Aligned_cols=388 Identities=18% Similarity=0.206 Sum_probs=270.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhh
Q 009108 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (543)
.++.|..+..++++.+.++++....++..|.+++++|++..+. +++.+++.++..+++++.|+++||+|||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3455677778889999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCC-
Q 009108 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP- 257 (543)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~- 257 (543)
++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988876541
Q ss_pred CchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhcc
Q 009108 258 LWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS 337 (543)
Q Consensus 258 ~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 337 (543)
.+||+.|++.++..++..+....+||++++..++++.+...+..++..+...... . ..++.....++. .
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~--~ 233 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA------N---IVMTLAAAMVQS--A 233 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh------h---hhhhhhHHhhhh--h
Confidence 2499999887776666655566678876543222211111111111110000000 0 000000001111 1
Q ss_pred chhHH-HHHHHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHH
Q 009108 338 RYWKV-VSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFT 413 (543)
Q Consensus 338 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 413 (543)
+..+. .........+.... ......+.+.+. ++.+.+.... ......++.+++.++.+++.||++||+.+..+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~ 312 (405)
T TIGR00891 234 GKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL 312 (405)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHH
Confidence 11111 11111111111111 222333444444 4467766543 5566778899999999999999999998877765
Q ss_pred HHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhh
Q 009108 414 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYF 493 (543)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 493 (543)
+..+....+... . .+.+...+..++.+ ....+..+....++.|.+|++.|++++|+.+.+.++|+.++|.+.
T Consensus 313 ~~~~~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 384 (405)
T TIGR00891 313 AGQLLIIPVFAI-G------ANVAVLGLGLFFQQ-MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG 384 (405)
T ss_pred HHHHHHHHHHHh-C------CchHHHHHHHHHHH-HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 543332222111 0 11122222222222 222334445556788999999999999999999999999999999
Q ss_pred HHHHHhhc-cccchhh
Q 009108 494 LSVVNKFG-ISTVYLG 508 (543)
Q Consensus 494 g~~~~~~g-~~~~~~~ 508 (543)
|.+.|+.| |+..+..
T Consensus 385 g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 385 ALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHhccccchhHHh
Confidence 99999998 6655443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=289.36 Aligned_cols=377 Identities=16% Similarity=0.186 Sum_probs=250.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcC---CCcchhhHHHHHHHH---HHHHHHHHHhhHhhhhhhcccchhh
Q 009108 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG---IAENTVLQGWIVSSL---LAGATVGSFTGGSLADKFGRTRTFQ 175 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~g~~~s~~---~l~~~i~~~~~g~l~dr~Grr~~~~ 175 (543)
++..+...+++.+.++++...++...|.+.++++ .+..+. +...+++ +++..++++++|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQL--LQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3445556678889999999999999999999985 344433 4444444 4555599999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHH
Q 009108 176 LDAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (543)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 247 (543)
.++++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874 5899999999999999999999999999999999999999888888888877
Q ss_pred HhhcccCC-------CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHh
Q 009108 248 VAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA 320 (543)
Q Consensus 248 ~~~~~l~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (543)
++...+.. ...|||+.|++.+++.++.......+||++++..++ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------~---------------------- 229 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------L---------------------- 229 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh------h----------------------
Confidence 66544321 137999999998887776655555567765421000 0
Q ss_pred ccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHH
Q 009108 321 GQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASS 397 (543)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 397 (543)
+++.+++++++++..+...+...+ .....++.+..|.|.+++ ..+.+.... ......+...++.++.|+
T Consensus 230 -----~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~ 301 (432)
T PRK10406 230 -----KEAGSLKGLWRNRRAFIMVLGFTA---AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGA 301 (432)
T ss_pred -----cccccHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011245667766555443332221 111223445556666654 467765433 444555667788888999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHH
Q 009108 398 LMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL 477 (543)
Q Consensus 398 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 477 (543)
++||++||+.+.....+.++....+..... . .......+.......+......+....+.+|.+|++.|++++|+
T Consensus 302 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~ 376 (432)
T PRK10406 302 LSDKIGRRTSMLCFGSLAALFTVPILSALQ-N----VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGL 376 (432)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHH-c----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhH
Confidence 999999998876665543333222211110 0 01111111111111111111223445578899999999999999
Q ss_pred HHHHHHH-HHHHHHHhhHHHHHhhc-cccchhhhhHHHHHHHHhhhe
Q 009108 478 SLGMHWI-SNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 478 ~~~~~~~-g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 522 (543)
.+.++++ .+...|.+.+ +.+..| +...+++.+++.+++.+..++
T Consensus 377 ~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 377 SYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9988775 3445777777 446666 444455555555555554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=283.85 Aligned_cols=355 Identities=14% Similarity=0.048 Sum_probs=246.6
Q ss_pred HHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHH
Q 009108 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ 195 (543)
Q Consensus 116 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 195 (543)
+......+++.+|.+++|+|++..+. |++.+.+.+++.+++++.|+++||+|||+++..++.....+.+....++|++
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE 80 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34455677889999999999999998 9999999999999999999999999999887655555444433333448999
Q ss_pred HHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHH
Q 009108 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (543)
Q Consensus 196 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 275 (543)
.++++|+++|++.+. .......++|++|+++|++++++...+..+|.+++++++.++.+. .|||+.|++.++++++..
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-GGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 999999999999985 556666779999999999999999999999999999999998865 899999999888876654
Q ss_pred H-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHH
Q 009108 276 L-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 354 (543)
Q Consensus 276 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (543)
+ ..+++||+|++.. +..+..+ ...+++++++++..+...+..++....
T Consensus 159 ~~~~~~lp~~p~~~~---~~~~~~~---------------------------~~~~~~~ll~~~~~~~~~~~~~~~~~~- 207 (368)
T TIGR00903 159 ILVLAALPALPFQAA---EGFGFKD---------------------------AVKEFGALAGRKDLWIIGAILGFGVAL- 207 (368)
T ss_pred HHHHHHcCCCCCCCC---CCcchHH---------------------------HHHHHHHHHcChhHHHHHHHHHHHHHH-
Confidence 4 4455688876321 1000000 001245778887776665554444433
Q ss_pred hhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCCh---hHHHH-HHHHHHHHHHHHHHHHhhcc
Q 009108 355 LAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRK---NLLTF-SFTGMAASMLLLSLSFTWKV 430 (543)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 430 (543)
+..+..|.|.++++.+++... .....+..+.+.+..++++||..|| +.... ...+.++.+..+...
T Consensus 208 ---~~~~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~----- 277 (368)
T TIGR00903 208 ---FDNLAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE----- 277 (368)
T ss_pred ---HHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 455667888888777766432 1222233334444557888887543 32222 232333322222211
Q ss_pred cccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhh
Q 009108 431 LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFA 510 (543)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~ 510 (543)
.+....+... .....+.....+..+.+.+|.+|++.|+++.|+.+..++++++++|.+.+.+.. |....|.+++
T Consensus 278 ---~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~ 351 (368)
T TIGR00903 278 ---LNRLALFAFI-GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLA 351 (368)
T ss_pred ---cccHHHHHHH-HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 0112222222 222222323334566688999999999999999999999999999999988773 6667788888
Q ss_pred HHHHHHHHhhh
Q 009108 511 TVCLLAVLYIA 521 (543)
Q Consensus 511 ~~~~~~~~~~~ 521 (543)
+..+++.+..+
T Consensus 352 ~~~~i~~~~~~ 362 (368)
T TIGR00903 352 ILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHH
Confidence 88777776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=341.07 Aligned_cols=430 Identities=36% Similarity=0.611 Sum_probs=336.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHH--HHcCCCcch-------hhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLA--KDLGIAENT-------VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~~~-------~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
.++.+.++++....+...+... .++..+... .+.+++.+...+|..+|++++|.++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4455888888888777666555 223322221 2348999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC-
Q 009108 181 LAAGAFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN- 256 (543)
Q Consensus 181 ~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~- 256 (543)
..+++++.++++ +++.++++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999999888887655332
Q ss_pred -CCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhh
Q 009108 257 -PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335 (543)
Q Consensus 257 -~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (543)
..+||+.+++.++++++..+..+++||+|+|+..+++.+++.+.+++.++.+..+++.++..++.++.++++.++++++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF 245 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 1459999999999998888888889999999999999888888888765554433333333333333333336788888
Q ss_pred ccch-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 009108 336 SSRY-WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414 (543)
Q Consensus 336 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 414 (543)
+++. .++..+...+..+....++....+|.+.+.+..+.+..........+..+++.+++.++.||+|||+.++.+..+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~ 325 (451)
T PF00083_consen 246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLL 325 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8755 445555555555555666677788888888887777774445556677778888888999999999999998888
Q ss_pred HHHHHHHHH-HHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhh
Q 009108 415 MAASMLLLS-LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYF 493 (543)
Q Consensus 415 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 493 (543)
.+++.+.+. ................+....++...+..+..+..+.+..|.+|++.|+++.|+...++++++++++.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~ 405 (451)
T PF00083_consen 326 MAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLF 405 (451)
T ss_pred ccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 877777665 1111111000112333444444555666677888888999999999999999999999999999999999
Q ss_pred HHHHHhhccccchhhhhHHHHHHHHhhheecccCCCCCHHHHHHhc
Q 009108 494 LSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERAL 539 (543)
Q Consensus 494 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (543)
..+.+..+....+.+.++++++..++.+++.||+|+++.+|+++++
T Consensus 406 ~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 406 PYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 8888887766778888888888888889999999999999999874
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=287.38 Aligned_cols=404 Identities=16% Similarity=0.151 Sum_probs=264.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH
Q 009108 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (543)
+|.++...++.......++..++...|++.++ |++..+. +++.+++.+++.++++++|+++||+|||++++.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~ 103 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 103 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence 34444555556666666666667788999988 9999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh----hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHH-HHHHHhhcccCCC
Q 009108 182 AAGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGN 256 (543)
Q Consensus 182 ~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~~~ 256 (543)
+++.+++++++ +++.+++.|++.|++.+..++.....+.+++|+++|++++++++.+.++|. +.+++++..+...
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 183 (452)
T PRK11273 104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF 183 (452)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999888763 788899999999999998888888889999999999999999999999886 4566654333222
Q ss_pred CCchHHHHHHhHHHHHHHH-HHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccc-hhhh
Q 009108 257 PLWWRTMFGLAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG-WFDL 334 (543)
Q Consensus 257 ~~~wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 334 (543)
.+||+.|++.+++.++.. +..+++||+|+....++ .++..+ +. .+ ..+.+++++.+.+.. .+.+
T Consensus 184 -~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---~~---~~------~~~~~~~~~~~~~~~~~~~~ 249 (452)
T PRK11273 184 -NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN---DY---PD------DYNEKHEQELTAKQIFMQYV 249 (452)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh---cc---cc------ccccccCCCccHHHHHHHHH
Confidence 589999999888776644 44555688765311111 000000 00 00 000000000000111 1225
Q ss_pred hccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhhhcc--CChhHHH
Q 009108 335 FSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLMDRQ--GRKNLLT 409 (543)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~ 409 (543)
++++.++...+...+.... ......|.|.++++ .+++.... ......++.+++.++.|+++||+ +||+...
T Consensus 250 ~~~~~~~~~~l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~ 325 (452)
T PRK11273 250 LPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 325 (452)
T ss_pred HcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 5666666555444443332 34455667777665 56654433 45566788889999999999998 4444322
Q ss_pred -HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHH
Q 009108 410 -FSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFV 488 (543)
Q Consensus 410 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 488 (543)
....+..++.+++... . ..+.....+...+++... .+.......+..|.+|++.+|+++|+.+...++|+.+
T Consensus 326 ~~~~~l~~~~~~~~~~~--~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 398 (452)
T PRK11273 326 VFFMTLVTIATIVYWLN--P----AGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 398 (452)
T ss_pred HHHHHHHHHHHHHHHHh--c----ccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHH
Confidence 2222222222222111 0 001111222222222211 1122222335679999999999999999999998765
Q ss_pred -HHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCCCHHH
Q 009108 489 -IGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 534 (543)
Q Consensus 489 -~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (543)
+|.+.|.+.|+.||+..|.+.+++++++++......+ .++|+.||
T Consensus 399 ~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 444 (452)
T PRK11273 399 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI-GEKRHHEE 444 (452)
T ss_pred hhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc-cccchHHH
Confidence 7999999999999999998888887777665554333 33333343
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=250.44 Aligned_cols=416 Identities=19% Similarity=0.244 Sum_probs=316.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhH
Q 009108 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (543)
+..|...+....+...+.+.....+.+.|.+.+..|.+..+. .++......|..+++..||.++|++|||+.+.+..+
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 344555666667777777766677778899999999887777 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 009108 180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (543)
Q Consensus 180 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 259 (543)
..++..++.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+......+ .|
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~-~g 228 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-FG 228 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-hh
Confidence 9999999999999999999999999999998 888889999999999898777666 88999999999888777766 79
Q ss_pred hHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhH---------------HHHHHHHHh-ccC
Q 009108 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVS---------------EVMLDLTNA-GQG 323 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~ 323 (543)
|||.......+..+.++..+++||+|++...++++.++.+.++++.+.|+.+ ++..++.+. .+.
T Consensus 229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a 308 (528)
T KOG0253|consen 229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSA 308 (528)
T ss_pred HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcc
Confidence 9999999998888888889999999999999999999888888776554321 111111111 112
Q ss_pred CCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC--------------------C-CchhH-HH
Q 009108 324 SAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVG--------------------I-ESDVA-AS 381 (543)
Q Consensus 324 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~-~~ 381 (543)
.++...+..+++..+..+..++....++...+. |+........+++... . +.... -.
T Consensus 309 ~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdl 387 (528)
T KOG0253|consen 309 AKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDL 387 (528)
T ss_pred ccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHH
Confidence 234455667777766655555554444444333 3444444444433211 0 01111 34
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccc
Q 009108 382 ALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALL 461 (543)
Q Consensus 382 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (543)
....+..+.|.++.+++.||+|||+.+...+++..++.+++..+.. .....+..+..-.+ ..+...+.+.|
T Consensus 388 litslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~--------rn~~tvllf~araf-isg~fqvaYvY 458 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT--------RNAYTVLLFTARAF-ISGAFQVAYVY 458 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC--------cchhHHHHHHHHHH-HhchheEEEEe
Confidence 5566888999999999999999999999999999888888776522 22223333333333 33445577789
Q ss_pred cccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCCCH
Q 009108 462 LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSL 532 (543)
Q Consensus 462 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (543)
..|.+|+..|+++.|....+..+|+++.|.+. +........+..+++++++++.+...++..|+|+|+.
T Consensus 459 tPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 459 TPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred cCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999999999999999999999888 3333344567778888888888888788889988763
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=283.61 Aligned_cols=363 Identities=17% Similarity=0.148 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 189 (543)
.+..+..+. ....++..|.+.+++|++..+. |++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++
T Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~ 86 (377)
T TIGR00890 10 VIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA 86 (377)
T ss_pred HHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH
Confidence 333334333 4456789999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHH
Q 009108 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (543)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~ 269 (543)
+++|++.++++|++.|++.+..++.....+.+++| ++|++++++...+.++|..+++.+.+.+.+. .+||+.|++.++
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~f~~~~~ 164 (377)
T TIGR00890 87 IADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-EGVPAAFIYMGI 164 (377)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 99999999999999999999888888888999997 5699999999999999987655554454444 789999999998
Q ss_pred HHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHH
Q 009108 270 PSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAA 348 (543)
Q Consensus 270 ~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 348 (543)
+.++..+..++ ++++++.. .+++.+ .++++.+.++.++++..+...+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (377)
T TIGR00890 165 IFLLVIVLGAFLIGYPPGQL-IKTNIE----------------------------VSVKDYTVWEMLRTPQFWVLYLSFF 215 (377)
T ss_pred HHHHHHHHHHHheecCchhc-cccCcc----------------------------cchhhhhHHHHHcCccHHHHHHHHH
Confidence 88776555443 34433210 000000 0001122345666666655444333
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHH
Q 009108 349 LFLFQQLAGINAVVYYSTSVFRSVGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSF 426 (543)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 426 (543)
..... ......+.+.+.++.+.+... .......++.++++++.|++.||++||+.+..+..+.+++.+++.+..
T Consensus 216 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (377)
T TIGR00890 216 LNAVS----GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP 291 (377)
T ss_pred HHhHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 32222 222233344445666766543 355667788899999999999999999998888877777766554421
Q ss_pred hhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccch
Q 009108 427 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVY 506 (543)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~ 506 (543)
. ...........+.+.+.+. ..+....++.|.+|+++|+++.|+.+...++|..++|.+.|.+.+..||+..|
T Consensus 292 ~------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 364 (377)
T TIGR00890 292 M------LNDVLFLATVALVFFTWGG-TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTF 364 (377)
T ss_pred c------chhHHHHHHHHHHHHHhcc-chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH
Confidence 0 0111122222333333322 23344557889999999999999999999999999999999999999999988
Q ss_pred hhhhHHHHHHH
Q 009108 507 LGFATVCLLAV 517 (543)
Q Consensus 507 ~~~~~~~~~~~ 517 (543)
.+.+++.+++.
T Consensus 365 ~~~~~~~~~~~ 375 (377)
T TIGR00890 365 IVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHhc
Confidence 88777766654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=278.71 Aligned_cols=359 Identities=15% Similarity=0.157 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHH-HHH-----HHHHHHHHHhhHhhhhhhcccchhhhh
Q 009108 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV-SSL-----LAGATVGSFTGGSLADKFGRTRTFQLD 177 (543)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~-s~~-----~l~~~i~~~~~g~l~dr~Grr~~~~~~ 177 (543)
.....++++.+.+.+|...++...|.+.+|++.++.+. +.+. +.. .++..+++++.|+++||+|||++++.+
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEF--ASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 35677788999999999999999999999999987775 4433 222 223347889999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhHHH--------HHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHh
Q 009108 178 AVPLAAGAFLCATAQSVQT--------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA 249 (543)
Q Consensus 178 ~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 249 (543)
.+++++++++++++++++. ++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874 68999999999999999899999999999999999999998888887777777
Q ss_pred hcccCC-------CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhcc
Q 009108 250 GLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQ 322 (543)
Q Consensus 250 ~~~l~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (543)
++.+.. ...|||+.|++..+...+........||++++..++++
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~----------------------------- 223 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR----------------------------- 223 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-----------------------------
Confidence 665421 23799999987654432222222223333221100000
Q ss_pred CCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhh
Q 009108 323 GSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLM 399 (543)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~ 399 (543)
.+.+..+++..+++..+ ..... ..+.....+..+..|.|.++++ .+.+.... ......++.+++.++.|+++
T Consensus 224 --~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 298 (434)
T PRK15075 224 --PSMREIFRSLAANWRIV--LAGML-MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALS 298 (434)
T ss_pred --cccccHHHHHHHhHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112222222211 11112 2222233455677778887765 67765543 45566788889999999999
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHH
Q 009108 400 DRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL 479 (543)
Q Consensus 400 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 479 (543)
||++||+.+..+..+..+.......... . ............+.+.+++ ...+....+..|.+|++.|+++.|+.+
T Consensus 299 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~ 373 (434)
T PRK15075 299 DRIGRRPVLIAFTVLAILTAYPALSWLV-A---APSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAY 373 (434)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHH-c---CCchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHH
Confidence 9999999877655443322211111100 0 0111111121222222222 223334457889999999999999976
Q ss_pred HHHHH-HHHHHHHhhHHHHHhhccc
Q 009108 480 GMHWI-SNFVIGLYFLSVVNKFGIS 503 (543)
Q Consensus 480 ~~~~~-g~~~~~~~~g~~~~~~g~~ 503 (543)
.+... ++.++|.+.|.+.|..|+.
T Consensus 374 ~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 374 SLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 65554 5888999999999998854
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=277.81 Aligned_cols=367 Identities=19% Similarity=0.174 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH
Q 009108 108 VACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (543)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 186 (543)
.+++..+...++..+..+.+|. +.+++|.+..+. |++.+++.+++.+++++.|+++||+|||++++.+.++++++.+
T Consensus 19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 3466667777778888888886 678999999988 9999999999999999999999999999999999999988877
Q ss_pred HHHHh--------hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009108 187 LCATA--------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (543)
Q Consensus 187 ~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 258 (543)
++.++ .+++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|.++++.+++.+.+. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~ 175 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW-G 175 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc-c
Confidence 66553 25778999999999999999999999999999999999999999999999999999999888765 7
Q ss_pred chHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccc
Q 009108 259 WWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR 338 (543)
Q Consensus 259 ~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (543)
+||+.+++.++..++..+.....|++++ .++++ .++++.+++
T Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------------------------~~~~~~~~~- 217 (399)
T PRK05122 176 GLAGLGLLIMLLALLGLLLARPRPAVPP---VKGER----------------------------------LPFRRVLGR- 217 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccc----------------------------------hhHHHHHHH-
Confidence 9999988777665544433332333221 00000 001111111
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 009108 339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS 418 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 418 (543)
.+.......+..+ .+.....+.+.++.+.+.+..........++.+++.++.+++.||+++|+.+..+..+.+++
T Consensus 218 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 292 (399)
T PRK05122 218 -VWPYGMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILG 292 (399)
T ss_pred -HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111111111111 12333445555555566554445556677888899999999999999999888877777776
Q ss_pred HHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 419 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
.+++... .+.+..++..++.+.+.+. ..+.......|..|++.||++.|+++...++|..+++.+.|.+.+
T Consensus 293 ~~~~~~~--------~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 293 LLLLWLA--------PSPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred HHHHHHh--------ccHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655442 1223333334444444432 233333456688899999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHHHhhheecccCCCC
Q 009108 499 KFGISTVYLGFATVCLLAVLYIAVNVVETKGR 530 (543)
Q Consensus 499 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (543)
..|++..+.+.+++.+++.++.+.+ ++++++
T Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 394 (399)
T PRK05122 364 WFGYPSIFLAAALAALLGLALTWLL-YRRAPR 394 (399)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHh-cccccc
Confidence 9999999988888877776655543 333333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=277.33 Aligned_cols=379 Identities=15% Similarity=0.136 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHc--CCCcchhhHHHHH-----HHHHHHHHHHHHhhHhhhhhhcccchhh
Q 009108 104 PFVGVACLGAILFGYHLGVVNGALEY-LAKDL--GIAENTVLQGWIV-----SSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (543)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~g~~~-----s~~~l~~~i~~~~~g~l~dr~Grr~~~~ 175 (543)
..+...+++.+.++++...++...|. +.+++ +.++. . +++. ++.+++..+++++.|+++||+|||++++
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-M--GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-H--HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 35666677889999999998888774 55666 66655 3 5553 3455677899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHH
Q 009108 176 LDAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (543)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 247 (543)
.+++++++++++++++++++ .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 5889999999999999999999999999999999999999999999998887
Q ss_pred HhhcccCC-------CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHh
Q 009108 248 VAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA 320 (543)
Q Consensus 248 ~~~~~l~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (543)
.+...+.. ...+||+.|++.+++.++........||+|++...+++.++.
T Consensus 179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~----------------------- 235 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA----------------------- 235 (438)
T ss_pred HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-----------------------
Confidence 66554431 137999999988877655544444567877643222110000
Q ss_pred ccCCCCcccch-hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHH
Q 009108 321 GQGSAEPEAGW-FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVAS 396 (543)
Q Consensus 321 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g 396 (543)
+++.++ +.+++++..+...+.. ...... .++....|.+.+. +..+.+.... .....++..+++.++.|
T Consensus 236 -----~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g 307 (438)
T PRK09952 236 -----KKRIPVIEALLRHPGAFLKIIAL--RLCELL-TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA 307 (438)
T ss_pred -----cccCCHHHHHHHchHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 2244444433332211 111111 2333344455444 4466665532 33345667788889999
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHH
Q 009108 397 SLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 476 (543)
Q Consensus 397 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 476 (543)
+++||++||+.+..+.++..++.+.+...... .......+...++.+.+.+ ...+..+.++.|.+|++.|+++.|
T Consensus 308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~e~~p~~~r~tg~g 382 (438)
T PRK09952 308 WLADRFGRRRVYITGALIGTLSAFPFFMALEA----QSIFWIVFFSIMLANIAHD-MVVCVQQPMFTEMFGASYRYSGAG 382 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCcchhHHHHh
Confidence 99999999998887766554443333221110 0011111222222222322 223445568899999999999999
Q ss_pred HHHHHHH-HHHHHHHHhhHHHHHhh--ccccchhhhhHHHHHHHHhhh
Q 009108 477 LSLGMHW-ISNFVIGLYFLSVVNKF--GISTVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 477 ~~~~~~~-~g~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~ 521 (543)
+.+.... +++.++|.+.+.+.+.. +|...+.+.+++.+++.+..+
T Consensus 383 ~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 383 VGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9776654 89999999999998855 366666666666666655544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=285.84 Aligned_cols=400 Identities=15% Similarity=0.210 Sum_probs=271.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
..|..+..+++..+.+.++....++.+|.+.+++|++..+. +++.+.+.+++.+++++.|+++||+|||++++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34556667788888999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCch
Q 009108 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (543)
Q Consensus 181 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w 260 (543)
.+++.++++++++++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w 173 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-WGW 173 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765 899
Q ss_pred HHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhH-HHHH------HHHHhccCCCCcccchh-
Q 009108 261 RTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVS-EVML------DLTNAGQGSAEPEAGWF- 332 (543)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~- 332 (543)
|+.|++.++..++..+....+||++++..++++.++..+..+.....+... .... ......... ....+.
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 251 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGN--LQNAAIV 251 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhh--hcchhHH
Confidence 999987655544444444456776654322221111111111110000000 0000 000000000 000000
Q ss_pred ---------------hhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHH
Q 009108 333 ---------------DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAV 394 (543)
Q Consensus 333 ---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ 394 (543)
...+.+.+. .........+..+........+.|.+++ +.|.+.... ......++.+++.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~ 330 (496)
T PRK03893 252 AVLGLLCAAIFISFMVQSSGKRWP-TGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCV 330 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111 1111111111111111223455666664 677776544 566677889999999
Q ss_pred HHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHH
Q 009108 395 ASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 474 (543)
Q Consensus 395 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 474 (543)
.|++.||+++|+.+..+..+..+..+.+.... ...........+...+.+.+..+....++.|.+|++.|+++
T Consensus 331 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 403 (496)
T PRK03893 331 GGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG-------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAG 403 (496)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcc
Confidence 99999999999988777655554443332210 01112222222222222333444555578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHH
Q 009108 475 VALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 513 (543)
Q Consensus 475 ~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 513 (543)
+|+.+...++|+.++|.+.|.+.|..|+...+...++++
T Consensus 404 ~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 404 LGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 999999999999999999999999999887775555443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=282.64 Aligned_cols=382 Identities=15% Similarity=0.034 Sum_probs=274.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH
Q 009108 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (543)
.|..+..++++.+....+.++++..+|.+.+|+|.+.++. +|+.+.|.+++.++++++|+++||+|||++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC-CcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCch
Q 009108 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (543)
Q Consensus 182 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w 260 (543)
+++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.+. .+|
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~-~gw 160 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH-FYW 160 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCh
Confidence 999999999999999999999999999998888888887776 678999999999999999999999999999876 899
Q ss_pred HHHHHHhHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHH------------HHHHhCchhhH-HH----------HHH
Q 009108 261 RTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKS------------IQTLYGKERVS-EV----------MLD 316 (543)
Q Consensus 261 r~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~----------~~~ 316 (543)
||.|++...+.++..+ ..+++||+++.. +++.+..... .+......... .. ...
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 238 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGL 238 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 9999998877766544 344457655311 1111111100 00000000000 00 000
Q ss_pred HHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHH
Q 009108 317 LTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTA 393 (543)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ 393 (543)
....+ .+.+.+.--.+++|++.+....+..+..... .....++.+.+++. .|.++... ......++..++.+
T Consensus 239 f~~~e-~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~ 313 (495)
T PRK14995 239 FIRTQ-LAASRPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGP 313 (495)
T ss_pred HHHHH-hcCCCCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00011 1111122224677777665544433333322 33444555555554 67776544 56667788899999
Q ss_pred HHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhH
Q 009108 394 VASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 473 (543)
Q Consensus 394 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 473 (543)
+.|++.||+|+|+.+..+..+.+++.+++..... ..+.+......++.+.+.+.... .....+.+..|+++++.
T Consensus 314 ~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~g~ 387 (495)
T PRK14995 314 IAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-----STQQWQAWGLMALLGFSAASALL-ASTSAIMAAAPPEKAAA 387 (495)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhHHHHHH-HHHHHHHhcCCHHhcch
Confidence 9999999999999888887777776665543211 11222233344444555443333 33336677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 474 AVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 474 ~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
+.++.++..++|+.+|+.+.|.+.+.
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=270.71 Aligned_cols=364 Identities=19% Similarity=0.139 Sum_probs=259.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
|..+..+.+..+..........+.+|.+.+++|+++++. ++..+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~ 96 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 444334444444444444455667899999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+.++|..++|.+++.+.+. .+||+
T Consensus 97 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-~gw~~ 175 (394)
T PRK10213 97 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-IGWRN 175 (394)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998866 79999
Q ss_pred HHHHhHHHHHHHHHHhc-ccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 263 MFGLAAIPSILLALGMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
.|++.+++.++..+... ..||.+++ + +. ...+.++.++++.++
T Consensus 176 ~f~~~~~l~~~~~l~~~~~~p~~~~~---~-~~--------------------------------~~~~~~~~l~~~~~~ 219 (394)
T PRK10213 176 VFNAAAVMGVLCIFWIIKSLPSLPGE---P-SH--------------------------------QKQNTFRLLQRPGVM 219 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCcc---c-cc--------------------------------chhHHHHHhcCHHHH
Confidence 99998877765544332 34654321 0 00 001123455666665
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH-
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS- 418 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~- 418 (543)
...+...+.... .+....+..|.+.++.|++... ......+++.+++.++.+++.||.++ +.+..+..+..+.
T Consensus 220 ~~~~~~~~~~~~---~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~ 295 (394)
T PRK10213 220 AGMIAIFMSFAG---QFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHH
Confidence 544433222222 1222333346666667777654 35666778899999999999999644 4433333332332
Q ss_pred HHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 419 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
+++.... .+.+......++.+.++.. ..+...+++.+..| +.++.+.++.....++|..+|+.+.|.+.|
T Consensus 296 ~~l~~~~--------~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 296 LVLTLWG--------SDKIVATGVAIIWGLTFAL-VPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHh--------hhHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222221 1223333344444444433 23334435667777 446778888888889999999999999999
Q ss_pred hhccccchhhhhHHHHHHHHh
Q 009108 499 KFGISTVYLGFATVCLLAVLY 519 (543)
Q Consensus 499 ~~g~~~~~~~~~~~~~~~~~~ 519 (543)
..|+...+...+++.++..+.
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 366 NIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred ccChhhHHHHHHHHHHHHHHH
Confidence 999887777766655555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=279.48 Aligned_cols=386 Identities=18% Similarity=0.152 Sum_probs=272.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhh
Q 009108 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS 193 (543)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~ 193 (543)
+...++...++...|.+.+++|.+..+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 3455666777889999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHH
Q 009108 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (543)
Q Consensus 194 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~ 273 (543)
++.++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.+. .+||+.|++.+++.++
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-FSWQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887765 7899999998888776
Q ss_pred HHHHhcc-cCCChhHHHhcCChHHHHHH-HHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHH
Q 009108 274 LALGMGL-SPESPRWLFQQGKKSEAEKS-IQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFL 351 (543)
Q Consensus 274 ~~~~~~~-~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 351 (543)
..+..++ .||+++.. +...++.++. .+... .+ ....+..++++...++.++++.++...+...+..
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGLL---------AE-QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVN 228 (399)
T ss_pred HHHHhhheecCCCCcc--ccCCHHHHhhcchhhc---------cc-cccccccCCCccchHHHhcCHHHHHHHHHHHHHH
Confidence 5554444 46554311 1001111000 00000 00 0011112223445667777777665554444433
Q ss_pred HHHhhhhHHHHHHHHHHHH-HcCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHH-HHHHHHHHHHHHHHHHh
Q 009108 352 FQQLAGINAVVYYSTSVFR-SVGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTF-SFTGMAASMLLLSLSFT 427 (543)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 427 (543)
.. ......+.+.+.+ ..+.+... .......++.+++.++.|++.||++||+.... ......++.+.......
T Consensus 229 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 229 IG----LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred hH----HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 32 3444555555544 35665543 35566778889999999999999999862111 11111111111111100
Q ss_pred hcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cccch
Q 009108 428 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVY 506 (543)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~ 506 (543)
... ........+..... .++..+..+....+..|..|++.|+++.|+.+.+.++|..++|.+.|.+.|..| +...+
T Consensus 305 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~ 381 (399)
T TIGR00893 305 ATN--YVNIPYAALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGAL 381 (399)
T ss_pred Hhc--cchhHHHHHHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHH
Confidence 000 00112222222222 223333566777789999999999999999999999999999999999999988 88888
Q ss_pred hhhhHHHHHHHHhhh
Q 009108 507 LGFATVCLLAVLYIA 521 (543)
Q Consensus 507 ~~~~~~~~~~~~~~~ 521 (543)
.+.+++.+++.++.+
T Consensus 382 ~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 382 MVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877777665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=267.82 Aligned_cols=375 Identities=13% Similarity=0.036 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 104 PFVGVACLGAILFGYHLGVVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
..+.+..++.++........+++.+.+.+ ++|+|.++. +++.+++.+++.++.++.|++.||+|.|+++.++.++++
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34555566667777778888889999876 899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccC---
Q 009108 183 AGAFLCATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA--- 254 (543)
Q Consensus 183 i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~--- 254 (543)
+.+++++++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999987 8999999999999998 7788999999999999999999999997666667655444332211
Q ss_pred --------------CCCCchHHHHHHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHH
Q 009108 255 --------------GNPLWWRTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319 (543)
Q Consensus 255 --------------~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (543)
....+||..+++..++.++..++.++. ++.++ .+.
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~--------------------------- 240 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRA--------------------------- 240 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---ccc---------------------------
Confidence 012458998888888777766555544 33221 000
Q ss_pred hccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHH
Q 009108 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASS 397 (543)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 397 (543)
...+..+.+|++..|.+.+.+.+. ++.+..+.++.|++.++ .++.... ...+..+...+.++++|+
T Consensus 241 -------~~~~~~~vlk~~~~Wllslly~~t----FG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~ 308 (462)
T PRK15034 241 -------SIADQLPVLQRLHLWLLSLLYLAT----FGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGA 308 (462)
T ss_pred -------CHHHHHHHhCCCchhHHHHHHHHH----HHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHH
Confidence 011224566777766655554433 33466666677666654 2222222 234445778888999999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccCh---------
Q 009108 398 LMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS--------- 468 (543)
Q Consensus 398 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 468 (543)
++||+|+++++.++.+.+.++.+.+...... ....+.+......+....+.+.+..++.- ++.+.+|+
T Consensus 309 LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~--~~~~~~~~~~~~~~~l~~~~G~gngsvfk-~ip~~f~~~~~~~~~~~ 385 (462)
T PRK15034 309 ISDKFGGVRVTLINFIFMAIFSALLFLTLPG--TGSGNFIAFYAVFMGLFLTAGLGSGSTFQ-MIAVIFRQITIYRVKMK 385 (462)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhcccchHHHH-hhHHHHhhhhhhccccc
Confidence 9999999999998887777666443332210 00011122222222222333333333333 56666663
Q ss_pred ------------hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cccchhhhhHHHHHHHHhhheeccc
Q 009108 469 ------------RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAVNVVE 526 (543)
Q Consensus 469 ------------~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
++.|.+.|+....+.+|+++.|.++|...+..| +...|+.+.+..+++.++.|..+.+
T Consensus 386 ~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 386 GGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred ccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 257899999999999999999999999998877 6667888888888888887765543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=276.78 Aligned_cols=368 Identities=13% Similarity=0.083 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHH
Q 009108 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (543)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 183 (543)
.....+++..+..+......++.+|.+.+++|++.++. +++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455567788888888888999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHH
Q 009108 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (543)
Q Consensus 184 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~ 263 (543)
+.++++++++++.++++|+++|++.+...+....++.|++|+++|+++++.......+|..++|.+.+.+.....+||+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999888888887765444799999
Q ss_pred HHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHH
Q 009108 264 FGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV 343 (543)
Q Consensus 264 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (543)
|++.+++.++..+..++ .+.|+. +++++++ .++.. ++.+ ++..+..
T Consensus 165 f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~~--------------------------~~~~~----~~~~-~~~~~~~ 210 (394)
T PRK03699 165 YACIGLVYVAIFILTLF-SEFPAL--GKHAPKA--------------------------DKPVA----KEKW-GIGVLFL 210 (394)
T ss_pred HHHHHHHHHHHHHHHHh-cCCccc--cccCccc--------------------------cCccc----cccC-ChHHHHH
Confidence 99888877665544332 222210 0000000 00000 0111 2222222
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHH
Q 009108 344 SVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASML 420 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 420 (543)
.+...+.. ..+..+..|.|.+.+ ..+.+.... ......++.++++++.++++||+++|+.+.....+..+.++
T Consensus 211 ~~~~~~~~----~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 211 AIAALLYI----LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 22222222 224455567777764 467766543 55566788899999999999999999988776665555444
Q ss_pred HHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 009108 421 LLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF 500 (543)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~ 500 (543)
++... .+.....+..++.+.+.. +..+....+..+..|. .++...+......++|..++|.+.|.+.+..
T Consensus 287 ~~~~~--------~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~ 356 (394)
T PRK03699 287 LFVNT--------DDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHF 356 (394)
T ss_pred HHHHc--------CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 43321 112222333333333322 2333444455666654 3677889999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHhhh
Q 009108 501 GISTVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 501 g~~~~~~~~~~~~~~~~~~~~ 521 (543)
|++..++..+++.+++.++..
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 357 GLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred CchhhhhhhHHHHHHHHHHHH
Confidence 999988888877777655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=272.14 Aligned_cols=368 Identities=16% Similarity=0.127 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH
Q 009108 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 186 (543)
..+++..+..+.......+.+|.+++|+|.+.++. |++.+++.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 34456677777778888899999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHH
Q 009108 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (543)
Q Consensus 187 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~ 266 (543)
++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++++.+. .+||+.|++
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gwr~~f~~ 162 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-FSWRYTFLL 162 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-ccHHHHHHH
Confidence 9999999999999999999999988888888999999999999999999999999999999999888765 799999999
Q ss_pred hHHHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 267 AAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 267 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
.+++.++..+. .+++||.++ +.+.+ .++ ..+.++++..+....
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~~----~~~~~-~~~-------------------------------~~~~~~~~~~~~~~~ 206 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIRD----EAKGG-LRE-------------------------------QFHFLRSPAPWLIFA 206 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCc----ccccC-HHH-------------------------------HHHHhcChHHHHHHH
Confidence 98877665443 344676532 10000 000 011233443333222
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLS 423 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 423 (543)
...+. ....+....+..+++.+..|.+.... .....+++.++++++.+++.||+++|+.+..+..+.+++.+++.
T Consensus 207 ~~~~~---~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 207 ATMFG---NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence 22111 11112223333444444467766544 55667888999999999999999999988888777776665543
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh-hcc
Q 009108 424 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK-FGI 502 (543)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~-~g~ 502 (543)
.... ..+...+..++.+.+......+.......+..|++.++.+. .+...++|.++||.+.|.+.|. .+|
T Consensus 284 ~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~ 354 (382)
T PRK10091 284 FFGG-------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAY 354 (382)
T ss_pred HHHh-------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCc
Confidence 3211 11222333333333332222222323444555555555543 4677899999999999999996 578
Q ss_pred ccchhhhhHHHHHHHHhhheecc
Q 009108 503 STVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
+..+.+.++++++.........+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 355 NYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred chHHHHHHHHHHHHHHHHHHHhh
Confidence 88888877766666554444333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=271.15 Aligned_cols=359 Identities=18% Similarity=0.191 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 188 (543)
.+..+......++..|.+|. +.+++|.|..+. |++.+++.+++.++++++|+++||+|||++++.+.++..++.+.+
T Consensus 21 ~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (392)
T PRK12382 21 AFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAY 98 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 33445555667777788885 678999999999 999999999999999999999999999999999988877765433
Q ss_pred H---H-----hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCch
Q 009108 189 A---T-----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (543)
Q Consensus 189 ~---~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w 260 (543)
. + .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+. .+|
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~-~g~ 177 (392)
T PRK12382 99 LLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH-FGF 177 (392)
T ss_pred HhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-cCh
Confidence 2 1 368899999999999999988888889999999999999999999999999999999999888765 789
Q ss_pred HHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchh
Q 009108 261 RTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW 340 (543)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 340 (543)
|+.+.+..+..++........||.++. ++++ .+.++.++ ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~~--~~ 218 (392)
T PRK12382 178 AALALTTMVLPLLAWAFNGTVRKVPAH---AGER----------------------------------PSLWSVVG--LI 218 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCC---cccC----------------------------------chHHHHHH--HH
Confidence 988776655444333322222332210 0000 00111111 01
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHH
Q 009108 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASML 420 (543)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 420 (543)
+...+...+.. ........+.+.++++.+.+..........++.+++.++.|++.||+++|+.+..+..+..++.+
T Consensus 219 ~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~ 294 (392)
T PRK12382 219 WKPGLGLALQG----VGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLL 294 (392)
T ss_pred HHhHHHHHHHH----HHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHH
Confidence 11111111111 11233444555556666666555555556777888999999999999999998888777777766
Q ss_pred HHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 009108 421 LLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF 500 (543)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~ 500 (543)
++... .+.+.......+.+.+.+. ..+.......|..|+++||++.|+.+...++|..++|.+.|.+.|+.
T Consensus 295 ~~~~~--------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~ 365 (392)
T PRK12382 295 LLWLA--------PTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF 365 (392)
T ss_pred HHHHc--------ccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55432 1122333333444444332 23344446678889999999999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHhhhee
Q 009108 501 GISTVYLGFATVCLLAVLYIAVN 523 (543)
Q Consensus 501 g~~~~~~~~~~~~~~~~~~~~~~ 523 (543)
||+..|.+.+++.+++.++.+..
T Consensus 366 g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred CchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888888777765543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=276.82 Aligned_cols=381 Identities=16% Similarity=0.070 Sum_probs=278.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH--
Q 009108 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-- 190 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-- 190 (543)
.++..+......+.+|.+.++++.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~ 103 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA 103 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence 44455556666778999999998888777 99999999999999999999999999999999998888887765543
Q ss_pred ---hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHh
Q 009108 191 ---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (543)
Q Consensus 191 ---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~ 267 (543)
.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+.+. .+|++.|++.
T Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-~~~~~~~~~~ 182 (417)
T PRK10489 104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-GGVAWNYGLA 182 (417)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-HhhHHHHHHH
Confidence 568899999999999998888888899999999999999999999999999999999999988755 6899999988
Q ss_pred HHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHH
Q 009108 268 AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGA 347 (543)
Q Consensus 268 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 347 (543)
++..++..+..+.+|++++.. +++.+. .+. .+..++.+++++.++...+..
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T PRK10489 183 AAGTFITLLPLLRLPALPPPP--QPREHP-LRS--------------------------LLAGFRFLLASPVVGGIALLG 233 (417)
T ss_pred HHHHHHHHHHHHhCCCCCCCC--cccccc-hHH--------------------------HHHHHHHHHcChHHHHHHHHH
Confidence 877776666666677654311 000000 000 011223455566555444332
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-cCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHH
Q 009108 348 ALFLFQQLAGINAVVYYSTSVFRS-VGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL 424 (543)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 424 (543)
.+... ......+.|.+.++ .+.+... .......++.+++.++.+++.||.++++.+..+..+.+++.+++..
T Consensus 234 ~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T PRK10489 234 GLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL 308 (417)
T ss_pred HHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc
Confidence 22211 22334455666665 6666543 3556677888999999999999987777777777666666555433
Q ss_pred HHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccc
Q 009108 425 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIST 504 (543)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~ 504 (543)
. .+.....+..++++.+.+ ...+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..|+..
T Consensus 309 ~--------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~ 379 (417)
T PRK10489 309 M--------PMWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA 379 (417)
T ss_pred c--------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh
Confidence 2 011222233333333322 1234445678899999999999999999999999999999999999999888
Q ss_pred chhhhhHHHHHHHHhhheecccCCCCCHHHHHHhc
Q 009108 505 VYLGFATVCLLAVLYIAVNVVETKGRSLEEIERAL 539 (543)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (543)
.+...+++.++..++.+...++.|+++.+|++++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 380 SASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 88888877777666666777888888887776653
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=278.12 Aligned_cols=397 Identities=13% Similarity=0.063 Sum_probs=275.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------------------HcCCCcchhhHHHHHHHHHHHHH
Q 009108 98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAK----------------------DLGIAENTVLQGWIVSSLLAGAT 155 (543)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~g~~~s~~~l~~~ 155 (543)
..+.+|.++.+++++..+.+.++..++...+.+.+ |++++..+. |++.+.+.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHH
Confidence 44556777778888888889999998888888877 788888888 999999999999
Q ss_pred HHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhH
Q 009108 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233 (543)
Q Consensus 156 i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 233 (543)
+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.||+|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999998887654 568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHH
Q 009108 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSE 312 (543)
Q Consensus 234 ~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (543)
+...+..+|.++++.+++.+.+...+||+.|++.+++.++..+..+++ +|+|+.. +...++..+..++
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~i~~--------- 239 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKKYINS--------- 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHHHHHh---------
Confidence 999999999999999998887652499999999998887766655544 5655421 1111111111100
Q ss_pred HHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchh--HHHHHHHHHHH
Q 009108 313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDV--AASALVGAANV 389 (543)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~ 389 (543)
...+++...+++.+++++++++..+...+..+.... .+..+..|.|.++++ .+.+... ....+..++.+
T Consensus 240 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~ 311 (465)
T TIGR00894 240 ----SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW 311 (465)
T ss_pred ----hcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence 000011111233467888888877666554443333 345566677766654 5666543 35566778889
Q ss_pred HHHHHHHHhhhccCChhHH--------HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccc
Q 009108 390 FGTAVASSLMDRQGRKNLL--------TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALL 461 (543)
Q Consensus 390 ~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (543)
++.++.|+++||+++|+.. ..+......+..++..... .......+....+. .+......+.....
T Consensus 312 i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 385 (465)
T TIGR00894 312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL-----SAAFYLTIIILTLA-NAVSSGPLAGVLIN 385 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHH-HHHhhhhhhhhhhc
Confidence 9999999999987543211 1111111111111111100 01112222222222 22222222333334
Q ss_pred cccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh---ccccchhhhhHHHHHHHHhhhe
Q 009108 462 LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF---GISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 462 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
..|..|+ .+|.+.|+.++.+.++++++|.+.|.+.+.. +|...|.+.+++.+++.++...
T Consensus 386 ~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 386 SLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 5566664 7999999999999999999999999988753 3677788888777777665544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=274.43 Aligned_cols=374 Identities=13% Similarity=0.089 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHH
Q 009108 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (543)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 187 (543)
......+...+......+..|.+.+++|++.++. +++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 117 (476)
T PLN00028 40 LSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFC 117 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3344455555556667788999999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccC----C----CCCc
Q 009108 188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA----G----NPLW 259 (543)
Q Consensus 188 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~----~----~~~~ 259 (543)
++++++++.++++|+++|++.+.. .....++.|++|+++|++++++.....++|..+++.+...+. + ...|
T Consensus 118 ~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 118 MSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 999999999999999999998764 445668899999999999999998777777666655443321 1 1258
Q ss_pred hHHHHHHhHHHHHHHHHHhcccCCC-hhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccc
Q 009108 260 WRTMFGLAAIPSILLALGMGLSPES-PRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR 338 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (543)
||+.|++.+++.++..+..++++++ |+. +.++..+ + ...++.+....+++.++++
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~ 252 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYRELKK---S----------------GTMPKDSFSKVLRYGVTNY 252 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhHHh---c----------------CccccccHHHHHHHHHcCc
Confidence 9999999998887766655555433 320 0000000 0 0000000112234556666
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChh-----HHH-
Q 009108 339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKN-----LLT- 409 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~- 409 (543)
..+...+..+..... ......+.|.++ +..|++.... ...+..++.++++++.|+++||++||+ ...
T Consensus 253 ~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~ 328 (476)
T PLN00028 253 RTWILALTYGYSFGV----ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWAL 328 (476)
T ss_pred hhHHHHHHHHHHHHH----HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHH
Confidence 655544433322222 223344444444 4457766543 566678899999999999999998652 111
Q ss_pred -HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHH
Q 009108 410 -FSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFV 488 (543)
Q Consensus 410 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 488 (543)
....+..+.++++... .+.....+..++++.+... ..+..+.+..+..| +.+|++.|+.+..+++|+++
T Consensus 329 ~~~~~l~~i~~~~~~~~--------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i 398 (476)
T PLN00028 329 WIVQTLGGVFCIWLGRA--------NSLGAAIVVMILFSIFVQA-ACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVL 398 (476)
T ss_pred HHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHHH-hhhhhcccCcccCh-hhchhhhhhhhccccHHHHH
Confidence 1211111211211110 0112222223333333222 12233345556554 67999999998888888877
Q ss_pred HHHhhHHHHHhhccccchhhhhHHHHHHHHhhhee
Q 009108 489 IGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVN 523 (543)
Q Consensus 489 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 523 (543)
+|.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus 399 ~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 399 TQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 776654 1123458888888887777776665544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=278.02 Aligned_cols=390 Identities=15% Similarity=0.149 Sum_probs=262.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH
Q 009108 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (543)
.|.++..+++...........++..+|.+.+++|.+.++. +++.+.+.++..++.+++|+++||+|||++++.++++.
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 3555555555555444444556778999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCch
Q 009108 182 AAGAFLCATAQSVQTMII-GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (543)
Q Consensus 182 ~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w 260 (543)
++++++++++++++.+++ .|++.|++.+...+....++.++++ ++|++++++...+..+|..++|.+++.+.+. .||
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-~gw 172 (455)
T TIGR00892 95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-FGW 172 (455)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hCh
Confidence 999999999999999875 5699999998777777888899996 6799999999999999999999998888765 799
Q ss_pred HHHHHHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccch
Q 009108 261 RTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (543)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (543)
|+.|++.+++.++..+..+++ ++.+.....+.+.++ ........++ .+.....+...+....++++++.
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 242 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE------GLPPDGSTKK----LSKKSTAEKINRFLDFSLFTHRG 242 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc------cCCCCCcccc----ccccchhhhhhhhcchHHhcCch
Confidence 999999998877655444343 322110000000000 0000000000 00000000000111124667777
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhcc--CChhHHHHHHHHH
Q 009108 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQ--GRKNLLTFSFTGM 415 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~ 415 (543)
++.......+.... +.....+.+.+.++.+++.... .....+++.++++++.+++.||. ++++.........
T Consensus 243 ~~~~~~~~~l~~~~----~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 243 FLVYLSGNVIMFLG----FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred HHHHHHHHHHHHHH----ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 66555544433332 3334455566666677766544 55667788889999999999973 3343333322222
Q ss_pred --HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhh
Q 009108 416 --AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYF 493 (543)
Q Consensus 416 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 493 (543)
.++.+++... .+.+..++..++.+.+++ ...+....++.|.+|++.+++++|+++...++|.+++|.+.
T Consensus 319 ~~~l~~ll~~~~--------~~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~ 389 (455)
T TIGR00892 319 FNGLTHLLCALA--------GDYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389 (455)
T ss_pred HHHHHHHHHHHh--------chHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence 2222222211 122333334444444433 23445556788899999999999999999999999999999
Q ss_pred HHHHHhhc-cccchhhhhHHHHHHHH
Q 009108 494 LSVVNKFG-ISTVYLGFATVCLLAVL 518 (543)
Q Consensus 494 g~~~~~~g-~~~~~~~~~~~~~~~~~ 518 (543)
|.+.|..| |...|.+.+++.+++.+
T Consensus 390 G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 390 GRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred eeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999875 88888887777666554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=267.72 Aligned_cols=368 Identities=18% Similarity=0.115 Sum_probs=268.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhh
Q 009108 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (543)
+++.++....+.+..+...+....+.+.+|.+.+++|.+..+. ++..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 85 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 3556777777788888888888888999999999999999888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009108 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (543)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 258 (543)
++.+++.++++++++++.+++.|+++|++.+...+....++.|++++++|.+++++......+|..++|.+++.+.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~ 164 (406)
T PRK15402 86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-L 164 (406)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence 999999999999999999999999999999988888899999999999999999999888889999999999888765 7
Q ss_pred chHHHHHHhHHHHHHHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhcc
Q 009108 259 WWRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS 337 (543)
Q Consensus 259 ~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 337 (543)
+||+.|++.++..++..+.. +..||+++.. +++.+..+ ...++++++++
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------------------------~~~~~~~~~~~ 214 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLSLKE---------------------------LGRDYKLVLKN 214 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccccHHH---------------------------HHHHHHHHHcC
Confidence 89999999888877655543 3456654311 00000000 01123456677
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 009108 338 RYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 414 (543)
+.++...+...+.... ......+.|.++ +..+.++... ......++.+++.++.+++.||+++|+.+..+..+
T Consensus 215 ~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~ 290 (406)
T PRK15402 215 RRFVAGALALGLVSLP----LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWP 290 (406)
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7766555444333222 122233344443 4467766543 33445567888999999999999999998888777
Q ss_pred HHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009108 415 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 494 (543)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 494 (543)
.+++.+++....... .....+......+++.+.+.... ......... +++++|++.++++....++..+|+.+.+
T Consensus 291 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~ 365 (406)
T PRK15402 291 MVAGLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSK 365 (406)
T ss_pred HHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665532111 11222333444444444443222 222223233 4478999999999999999999999999
Q ss_pred HHHHhhccccchhh
Q 009108 495 SVVNKFGISTVYLG 508 (543)
Q Consensus 495 ~~~~~~g~~~~~~~ 508 (543)
.+.+..+.......
T Consensus 366 ~l~~~~~~~~~~~~ 379 (406)
T PRK15402 366 HAYLGGGNGLFNLF 379 (406)
T ss_pred hcccCCchHHHHHH
Confidence 99888775443333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=260.66 Aligned_cols=359 Identities=14% Similarity=0.124 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH
Q 009108 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 185 (543)
+..+.++.+..........+.+|.+.+++|.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777788888899999999999999998888 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHH
Q 009108 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (543)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~ 265 (543)
+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+. ..|... +
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~-~ 163 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE-LMSVLP-W 163 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccchHH-H
Confidence 99999999999999999999999988888888888899999999999999999999999999999988653 222222 2
Q ss_pred HhHHHHHHHH-HHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHH
Q 009108 266 LAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS 344 (543)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 344 (543)
..+....... +.....+++++ ++ ++..+..+.++++.++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~------~~-------------------------------~~~~~~~~~~~~~~~~~~~ 206 (381)
T PRK03633 164 VTGLVLAAILPLLFTRILNQQA------EN-------------------------------HDSTSIWPMLKLRQARLGV 206 (381)
T ss_pred HHHHHHHHHHHHHHhcccCCCC------CC-------------------------------CCCCCHHHHHHhcchHHHH
Confidence 2222222111 11111121110 00 0111234455666555433
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 009108 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLL 422 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 422 (543)
......... +.....+.|.+.++.+.+.... ......++.+++++..|++.||+++|+.+..+..+..++.+.+
T Consensus 207 ~~~~~~~~~----~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 207 NGCIISGIV----LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM 282 (381)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 222222221 2333445677777777765533 4556677888999999999999999998887777766655443
Q ss_pred HHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 009108 423 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGI 502 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~ 502 (543)
.. . ........+.+.+.. ...|.....+.|..|+++++.+.+..+...++|..++|.+.|.+.|+.|+
T Consensus 283 ~~----------~-~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~ 350 (381)
T PRK03633 283 LS----------Q-AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD 350 (381)
T ss_pred hh----------h-HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 21 0 111122222332222 33455666778888888888888888888999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHhhh
Q 009108 503 STVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~ 521 (543)
...|.+.+++.++..+..+
T Consensus 351 ~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 351 NLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 8888888877776655443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=274.30 Aligned_cols=403 Identities=13% Similarity=0.097 Sum_probs=266.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH
Q 009108 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (543)
++..+..+.+...........+....|.+++ +|++.++. +++.+++.++..+++++.|+++||+|||++++.+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 3455555556666666666666677888876 59999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCC
Q 009108 182 AAGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257 (543)
Q Consensus 182 ~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 257 (543)
+++.+++++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+.+......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9998887764 567888899999999999988888999999999999999999999999999888877665443333
Q ss_pred CchHHHHHHhHHHHHHHH-HHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccc-hhhhh
Q 009108 258 LWWRTMFGLAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG-WFDLF 335 (543)
Q Consensus 258 ~~wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 335 (543)
.+||+.|++.+++.++.. +..+++||+|+....+ +.++.++ +. ... ..++.+.+.+.+.. ...++
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~--~~~-------~~~~~~~~~~~~~~~~~~~~ 248 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEYRN---DY--PDD-------YNEKAEQELTAKEIFMQYVL 248 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhccc---cc--ccc-------cccccccccchHHHHHHHHc
Confidence 689999999888877654 4445567776531100 0000000 00 000 00000000000111 12356
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHH
Q 009108 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSF 412 (543)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 412 (543)
+++.++...+...+.... ...+..|.|.++++ .|.+... .......++.+++.++.|++.||+++++....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 324 (438)
T TIGR00712 249 PNKLLWYIAIANVFVYLL----RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV 324 (438)
T ss_pred cCchHHHHHHHHHHHHHH----HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence 667666654443333322 34455667777665 4666543 3556677888999999999999996543222232
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHH-HHHHH
Q 009108 413 TGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN-FVIGL 491 (543)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~ 491 (543)
....+........... ...+.+......+.++.+. .+..........|.+|++.||+++|+.+...++++ +++|.
T Consensus 325 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~ 400 (438)
T TIGR00712 325 FFMTLVTIAVIVYWMN---PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 400 (438)
T ss_pred HHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcch
Confidence 2222211111111000 0011121112222222211 11112222356788999999999999999988875 68999
Q ss_pred hhHHHHHhhccccchhhhhHHHHHHHHhhheecccCC
Q 009108 492 YFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETK 528 (543)
Q Consensus 492 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (543)
+.|.+.|..|+...+.+.+++.+++.+..+..++|.|
T Consensus 401 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 401 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998888888887777777677655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=267.46 Aligned_cols=381 Identities=20% Similarity=0.276 Sum_probs=265.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
+.+..+...++..+..+++.....+..|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34555556666777778888888889999999999998888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCch
Q 009108 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (543)
Q Consensus 181 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w 260 (543)
.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~ 170 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-FGW 170 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888765 799
Q ss_pred HHHHHHhHHHHHHH-HHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccch
Q 009108 261 RTMFGLAAIPSILL-ALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (543)
Q Consensus 261 r~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (543)
|+.|++.++..++. .+...++||++++...+ ++++..+..++.......+.. ....+..+..+..+..++.+++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKT 248 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchh
Confidence 99999887555543 44455578877654333 222222222211110000000 0000000000011111222333333
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHH
Q 009108 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAA 417 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 417 (543)
.+......... +.....+.....+.|.+.++.+.+.... ......++.+++.++.+++.||+++|+... ...+..+
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLY-FMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAV 326 (398)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHH
Confidence 33322222222 2223334556667777777777766533 556677889999999999999999984433 3333333
Q ss_pred HHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009108 418 SMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSV 496 (543)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 496 (543)
...++... . .+........++.+.+.+. ..+....++.|.+|++.|+++.|+.+.+.++|..++|.+.|.+
T Consensus 327 ~~~~~~~~-~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 327 FAVLVGST-L------FSPTLLLLLGAIAGFFVNG-GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHH-h------hCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 33332221 0 1222333334444444332 3445566889999999999999999999999999999999875
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=270.44 Aligned_cols=380 Identities=18% Similarity=0.146 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH
Q 009108 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 186 (543)
.+++++.+...++...+++.+|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 13 WIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34456677788888888899999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHH
Q 009108 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (543)
Q Consensus 187 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~ 266 (543)
+++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.+++.+.+. .+||+.|++
T Consensus 91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-~gw~~~f~~ 169 (471)
T PRK10504 91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-ASWHWIFLI 169 (471)
T ss_pred HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876 799999999
Q ss_pred hHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHH---------HHhCchh---hHHHH-----------HHHHHhcc
Q 009108 267 AAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQ---------TLYGKER---VSEVM-----------LDLTNAGQ 322 (543)
Q Consensus 267 ~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~-----------~~~~~~~~ 322 (543)
......+..+.... .|+.+. .+.+.+....... ...+.+. ..... .....++.
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHAR 246 (471)
T ss_pred HHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 87776655444333 344332 1111111110000 0000000 00000 00000111
Q ss_pred CCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhh
Q 009108 323 GSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLM 399 (543)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~ 399 (543)
..+++..+ .++++++.+.......++.... ......+.|++++. .|.++... ......++.+++.++.+++.
T Consensus 247 ~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 321 (471)
T PRK10504 247 NNNRALFS-LKLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVV 321 (471)
T ss_pred cCCCCccC-HHHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222 3578888877765555544433 33445556666553 66665544 44555666777788999999
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHH
Q 009108 400 DRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL 479 (543)
Q Consensus 400 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 479 (543)
||+++|+.+..+..+.++..+++.+... ....+.......+.+.+.+.... ....+..+..|++.++.++|+.+
T Consensus 322 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 395 (471)
T PRK10504 322 NRFGYRRVLVATTLGLALVSLLFMLVAL-----LGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLS 395 (471)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHH
Confidence 9999999998888777776665544210 01111112223333333332222 33446778889999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhhccc
Q 009108 480 GMHWISNFVIGLYFLSVVNKFGIS 503 (543)
Q Consensus 480 ~~~~~g~~~~~~~~g~~~~~~g~~ 503 (543)
+...+|..+|+.+.|.+.+..|+.
T Consensus 396 ~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 396 MIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999887763
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=258.66 Aligned_cols=429 Identities=22% Similarity=0.260 Sum_probs=308.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHc-CCC-------cchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcc
Q 009108 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-GIA-------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s-------~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 170 (543)
.++....+.+..++.+.+.++...++.+.|-+...+ |.+ .... +.+..+-.+|..+||+++|++.||+||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~--~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVL--ALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHH--HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344566777788899999999999999998887665 322 3333 889999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHH
Q 009108 171 TRTFQLDAVPLAAGAFLCATAQ-------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI 243 (543)
Q Consensus 171 r~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 243 (543)
|+++...++++.++++++++.. -.+++...|+++|+|.|+-+|...++.+|...+++||...+.+.+..++|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9999999999999999888752 257788999999999999999999999999999999998888777777776
Q ss_pred HHHHHhhcccC----CC----------CCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCCh-HHHHHHHHHHhCch
Q 009108 244 LAALVAGLPLA----GN----------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKK-SEAEKSIQTLYGKE 308 (543)
Q Consensus 244 ~~~~~~~~~l~----~~----------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~ 308 (543)
+.|.+++..+. .. ..-||..|.+.+++++++....+.+||++++.....++ +.+. .+..+..
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~ 270 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVL 270 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccc
Confidence 66655543322 10 02399999999999999888888899999876333222 2221 1111111
Q ss_pred hhHHHHHHHHHhccCCCCcccc---hhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH------
Q 009108 309 RVSEVMLDLTNAGQGSAEPEAG---WFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA------ 379 (543)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 379 (543)
.. ..++....+...+.++.+ +...+..+ .-..+++.+..++..-..++....+...+++..|..+...
T Consensus 271 ~~--~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~ 347 (538)
T KOG0252|consen 271 SV--DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELF 347 (538)
T ss_pred cc--ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHH
Confidence 11 111111111122222222 22233223 2244555555555555556667777777777666544322
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCc
Q 009108 380 -----ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGA 454 (543)
Q Consensus 380 -----~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (543)
...+...+.++|..+..+++|++|||+..+.+++++.+..+.++..... ........+...+..++...+.
T Consensus 348 ~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~----~~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 348 KVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ----LENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred HHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc----ccccCceeehHHHHHHHHhcCC
Confidence 1122233444566777889999999999999999999988888765332 1122333344444455556667
Q ss_pred ccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH-----hhccccchhhhhHHHHHHHHhhheecccCCC
Q 009108 455 GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN-----KFGISTVYLGFATVCLLAVLYIAVNVVETKG 529 (543)
Q Consensus 455 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (543)
+.....+.+|.+|.+.|+++.|+....+-.|++++...+.++.+ ..|.+.++++++++++++.+..+ +.||+++
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~ 502 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKG 502 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeecccc
Confidence 77777789999999999999999999999999999999999999 77889999999999999887654 4669999
Q ss_pred CCHHHHHHhcC
Q 009108 530 RSLEEIERALN 540 (543)
Q Consensus 530 ~~~~~~~~~~~ 540 (543)
++++|++.+.+
T Consensus 503 ~~leei~~e~~ 513 (538)
T KOG0252|consen 503 KSLEEISNEEE 513 (538)
T ss_pred cCHHHhcChhh
Confidence 99998865543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=271.26 Aligned_cols=381 Identities=18% Similarity=0.213 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHH
Q 009108 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (543)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 184 (543)
.+..++++.+...++....++.+|.+.+++|.+.++. +++.+.+.++..++.++.|+++||+|||++++.+.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3455677788888999999999999999999999888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHH
Q 009108 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (543)
Q Consensus 185 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f 264 (543)
.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++++.+. .+||+.|
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~f 159 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-YHWRWIF 159 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-cCceehh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876 8999999
Q ss_pred HHhHHHHHHHHHHh-cccCCChhHHHhcCChHHHHHHH------------HHHhCch--hhHHHHH----------HHHH
Q 009108 265 GLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSI------------QTLYGKE--RVSEVML----------DLTN 319 (543)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~~~~~----------~~~~ 319 (543)
++.+++.++..+.. +++||+++. .+++.+.....+ .+-.... ....... ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99887776655443 344654331 111111110000 0000000 0000000 0000
Q ss_pred hccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHH
Q 009108 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVAS 396 (543)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g 396 (543)
.+. +.+++....++++++.++...+..++..+. +....++.|.++++ .|.++... ......++.+++.++.|
T Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 238 WEL-TDDNPLVDLRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHH-cCCCCccCHHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 111112223567777766655444444333 33444556666554 57666544 55667788899999999
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHH
Q 009108 397 SLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 476 (543)
Q Consensus 397 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 476 (543)
++.||++||+.+..+..+.+++..++.+... .....+.......+.+.+.+....+... ...+..|+++++++.|
T Consensus 313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 313 RMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTT-IALSGLPPHKIARGSS 387 (485)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHH
Confidence 9999999999988888777777666542211 1112222333344444444433333333 5567789999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhh
Q 009108 477 LSLGMHWISNFVIGLYFLSVVNKF 500 (543)
Q Consensus 477 ~~~~~~~~g~~~~~~~~g~~~~~~ 500 (543)
+.++.+++|+.+|+.+.+.+.++.
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=259.94 Aligned_cols=380 Identities=17% Similarity=0.133 Sum_probs=266.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhH
Q 009108 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (543)
+..+..+.++++...++.++...+....+.+++.||++++.. |++.+.+.+.+.+++|+.|+++|||.||+++.+|..
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 344567778899999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 009108 180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (543)
Q Consensus 180 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 259 (543)
+|.++.++++++..||+++++|.+.|+|.+...+.++.+++|.+|..+|++++++++.+..+|..+|.+.+..+......
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877566
Q ss_pred hHHHHHHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccc
Q 009108 260 WRTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR 338 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (543)
|||.|+..+++++++.++.+++ +|+++-. +++.+...+ ..........+.+.+.+++
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga--~~~~~~~~~--------------------~~~~~ts~~kDl~~l~~~~ 244 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGA--RDEVDGENK--------------------MVKPFTSVWKDLKVLAKIK 244 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCccccc--ccccccCCc--------------------CCCCccchHHHHHHHHccC
Confidence 9999999999999877766555 5543310 000000000 0000001112233444545
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHHHHHHHHHhhhccCCh----hHHHHHH
Q 009108 339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGI--ESDVAASALVGAANVFGTAVASSLMDRQGRK----NLLTFSF 412 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~ 412 (543)
.+....+.+....+...+.-.+.+.+.++..+-.+. +....+..+..+++.+|.+++|.++||+.++ .......
T Consensus 245 v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q 324 (493)
T KOG1330|consen 245 VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQ 324 (493)
T ss_pred ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHH
Confidence 555555555555554444344444444444443443 3334466777888999999999999994321 1122222
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHH-HHH
Q 009108 413 TGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFV-IGL 491 (543)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~ 491 (543)
+..+.+......................+.+++++............-+..|++|++.|.++.++-..+..+.+-. +|+
T Consensus 325 ~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ 404 (493)
T KOG1330|consen 325 LSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPY 404 (493)
T ss_pred HHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcc
Confidence 2111111111111000001111223333444444444444344444447789999999999999988887665544 555
Q ss_pred hhHHHHHhh-ccc
Q 009108 492 YFLSVVNKF-GIS 503 (543)
Q Consensus 492 ~~g~~~~~~-g~~ 503 (543)
+.|.+.|+. |++
T Consensus 405 ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 405 IVGILSDKLRGYK 417 (493)
T ss_pred eehhHHHHhhCCC
Confidence 999998864 444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=260.56 Aligned_cols=351 Identities=13% Similarity=0.057 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 189 (543)
..+.+...+......+.+|.+..+++.+..+. +++.+++.++..++++++|+++||+|||++++.+.++.+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 45566666777777889999999999998888 9999999999999999999999999999999999999999998888
Q ss_pred Hhh-----hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHH
Q 009108 190 TAQ-----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (543)
Q Consensus 190 ~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f 264 (543)
+++ +++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g~~~~~ 161 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-LGIKWAI 161 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHH
Confidence 887 9999999999999999999999999999999999999999999999999999999999988765 7999999
Q ss_pred HHhHHHHHHHHHHhccc--CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHH
Q 009108 265 GLAAIPSILLALGMGLS--PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (543)
Q Consensus 265 ~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (543)
++.++..++..+..+++ ||+++. ++++...+..++ .+..++++++++.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~ 214 (365)
T TIGR00900 162 WVDAVGFAISALLIVSVRIPELAAS----EIQALSNAVLRD-----------------------TREGIKFVLKNPLLRT 214 (365)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCc----cccccchhHHHH-----------------------HHhHHHHHHcCcHHHH
Confidence 98887666554444333 332210 000000000000 1122455667777665
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 009108 343 VSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419 (543)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 419 (543)
..+...+...... .....+.|.+.++ .+.+.... ......++.+++.++.+++.||.+||+.+..+..+.+++.
T Consensus 215 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 291 (365)
T TIGR00900 215 LLLLALLFNLVFA---PAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAI 291 (365)
T ss_pred HHHHHHHHHHHHH---HHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 5554444333221 1222445555554 56655433 5566778889999999999999999998887766666665
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
+.+.+.. + +.+...+..++.+.+.+. ..+....++.|..|++.|+++.|+.+...+++..++|.+.|.+.|.
T Consensus 292 ~~~~~~~------~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 292 LVVGLTP------P-NFPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHhhc------h-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554421 0 122333334444444432 3455566888999999999999999999999999999999999987
Q ss_pred hc
Q 009108 500 FG 501 (543)
Q Consensus 500 ~g 501 (543)
.|
T Consensus 364 ~g 365 (365)
T TIGR00900 364 LG 365 (365)
T ss_pred cC
Confidence 64
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=267.50 Aligned_cols=371 Identities=15% Similarity=0.136 Sum_probs=253.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh
Q 009108 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 192 (543)
.+...++...++...|.+.+++|.+..+. +++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 45566677788889999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHH-HhhcccCCCCCchHHHHHHhHHHH
Q 009108 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL-VAGLPLAGNPLWWRTMFGLAAIPS 271 (543)
Q Consensus 193 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~l~~~~~~wr~~f~~~~~~~ 271 (543)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ ++++.+.+. .+||+.|++.+++.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIA 160 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 466555544 78999999988777
Q ss_pred HHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHH
Q 009108 272 ILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALF 350 (543)
Q Consensus 272 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (543)
++..+ ..++.+|+++....++.++...+ ..+ .+.+.+++.....+..++++++++..+...+...+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQSCGLPPAEEMPNE------EPD------GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFV 228 (379)
T ss_pred HHHHHHHheeeCCCccccccCccccCccc------ccc------cccccccccccchHHHHHHHHhcchHHHHHHHHHHH
Confidence 66544 44445666542111000000000 000 000000001111222345667777766655544443
Q ss_pred HHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHh
Q 009108 351 LFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFT 427 (543)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 427 (543)
... ......+.+.+.+ ..+.+.... ......++.+++.++.+++.||..+++...............+.....
T Consensus 229 ~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 229 YVV----RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 332 3344445555543 456665433 556677888999999999999864332222221111111111111100
Q ss_pred hcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccch
Q 009108 428 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVY 506 (543)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~ 506 (543)
. ...+........++.+. ...+..+....+..|..|++.|+++.|+.+...++|+.++|.+.|.+.|..||+..|
T Consensus 305 ~---~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 305 N---PAANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred C---cchhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 0 00111222222222222 222333344457889999999999999999999999999999999999999987654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=255.61 Aligned_cols=372 Identities=15% Similarity=0.126 Sum_probs=255.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
....+...+.+..+...++.....|.+|.+.+++|.+.++. ++..+++.+++.++++++|+++||+|||++++.+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 90 (413)
T PRK15403 13 ATLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALI 90 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHH
Confidence 33444555566677788888999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCch
Q 009108 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (543)
Q Consensus 181 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~w 260 (543)
++++++++++++|++.++++|+++|++.+...+....++.|++++++|++++++......+|..+||++++.+.+. .+|
T Consensus 91 ~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~gw 169 (413)
T PRK15403 91 FTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VHW 169 (413)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCH
Confidence 9999999999999999999999999998876677778899999999999999999999999999999999888755 799
Q ss_pred HHHHHHhHHHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccch
Q 009108 261 RTMFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (543)
Q Consensus 261 r~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (543)
|+.|++.+++.++..+. .+++||+++. ++++..... ...+++++++++.
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~~~---------------------------~~~~~~~ll~~~~ 219 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFSAKS---------------------------VLRDFRNVFRNRL 219 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCChHH---------------------------HHHHHHHHHcCHH
Confidence 99999998887766554 4446876531 111000000 0112356677777
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 009108 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMA 416 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 416 (543)
++...+...+.... +.....+.|.++++ .+.+.... .......+.+++..+.+++.++..+++.......+..
T Consensus 220 ~~~~~l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (413)
T PRK15403 220 FLTGAATLSLSYIP----MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQL 295 (413)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 77655544433332 33444455655554 46766644 3344556677777777776655444444333333333
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccc-cccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009108 417 ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPA-LLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLS 495 (543)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 495 (543)
++..++....... ........+..++++.+.+........ ++... ...+|++.++.+.....+..+++...++
T Consensus 296 ig~~l~~~~~~~~---~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~---~~~~G~a~a~~~~~~~~~~~~~~~~~g~ 369 (413)
T PRK15403 296 VGLALLIVGNLLW---PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN---NLPKGTVSASLNMVILMVMAVSVEIGRW 369 (413)
T ss_pred HHHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC---CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333221110 111112233444444444432222221 12212 2237999999999999999999999988
Q ss_pred HHHhhccccchhhhhHHHHHH
Q 009108 496 VVNKFGISTVYLGFATVCLLA 516 (543)
Q Consensus 496 ~~~~~g~~~~~~~~~~~~~~~ 516 (543)
+.+. +....|...++++.+.
T Consensus 370 ~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 370 LWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHc-CCchHHHHHHHHHHHH
Confidence 7766 4456665555544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=242.56 Aligned_cols=377 Identities=18% Similarity=0.152 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH
Q 009108 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 185 (543)
+.+..+...+..+.+.+.+++.+.|.+++|+|++|. +++.++..+...+..++.|.+.||||.|++..+++++..+-.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~ 93 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC 93 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence 334455555666667788889999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh---HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc---
Q 009108 186 FLCATAQS---VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--- 259 (543)
Q Consensus 186 ~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~--- 259 (543)
+..+++.+ +|++++++++.|++. ..+......++.|||++++|.++|+.. ..++|..+..+++.++... .+
T Consensus 94 ~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~-~g~~~ 170 (417)
T COG2223 94 LGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA-FGFLA 170 (417)
T ss_pred HHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH-HhhHH
Confidence 99999854 459999999999994 588899999999999999999999999 8888988777777766644 55
Q ss_pred hHHHHHHhHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccc
Q 009108 260 WRTMFGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR 338 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (543)
|+....+..+..++..+..++ +.|.|......++.. ...++.+++++
T Consensus 171 w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~--------------------------------~~~~~~v~~~~ 218 (417)
T COG2223 171 WRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL--------------------------------PAQLKAVFSNK 218 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc--------------------------------hhHHHHHhcCc
Confidence 999998888888776665544 455554211111000 02244566677
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 009108 339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGM 415 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 415 (543)
+.|.+.+.+...+ +.+..+..+++.++++ ++.+... .......+.+.+.++++|+++||+|.+|.....+..+
T Consensus 219 ~~W~lsllY~~tF----G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~ 294 (417)
T COG2223 219 DTWLLSLLYFATF----GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGM 294 (417)
T ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHH
Confidence 7776655544444 4466777777777654 6777665 4566667788899999999999999999999999888
Q ss_pred HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009108 416 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLS 495 (543)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 495 (543)
+++..++......... ..+....+...+......+.+...+. -++...+|+ +.|.+.|+...++.+|++.-|...|.
T Consensus 295 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~ 371 (417)
T COG2223 295 ALAAALLSLFLTGFGH-GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGV 371 (417)
T ss_pred HHHHHHHHcccccccc-CcchHHHHHHHHHHHHHhccCcchhe-eechHHHHh-hhhHHHHHHHHhccccccchhHHHHH
Confidence 8888887765321110 11222233333334444444444444 477788875 58999999999999999999999999
Q ss_pred HHHhhc-cccchhhhhHHHHHHHHhhheeccc
Q 009108 496 VVNKFG-ISTVYLGFATVCLLAVLYIAVNVVE 526 (543)
Q Consensus 496 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
..+.+| +...|+++..+.+++.++.+..+.+
T Consensus 372 ~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 372 SLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 7778888888888888766654443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=255.40 Aligned_cols=343 Identities=19% Similarity=0.217 Sum_probs=249.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh
Q 009108 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 192 (543)
.+....+.....+..|.+.+++|.+.++. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 45556677888899999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 193 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+.+. .+||+.|++.++..+
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~ 170 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-LSWHAIFAFLSLAGI 170 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988765 789999999888776
Q ss_pred HHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHH
Q 009108 273 LLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFL 351 (543)
Q Consensus 273 ~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 351 (543)
+..+.. ++.||+++.. ++ ++..+ ....++++++++.++...+......
T Consensus 171 ~~~~~~~~~~~~~~~~~---~~-~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (385)
T TIGR00710 171 LLSALIFFILPETLPYE---AR-IQIST---------------------------YFETFLLLLKSKMFWGYALIYGASF 219 (385)
T ss_pred HHHHHHHHhCCCCCCCc---cc-CCHHH---------------------------HHHHHHHHHcCchhHHHHHHHHHHH
Confidence 655444 3456654311 00 00000 0112345566666665444433322
Q ss_pred HHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhh
Q 009108 352 FQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTW 428 (543)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (543)
.. +.....+.|.+++ ..+.++... ......++.+++.++.+++.||+++|+.+..+..+..++.+++......
T Consensus 220 ~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (385)
T TIGR00710 220 GG----FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL 295 (385)
T ss_pred HH----HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2333444454443 567666543 5556678889999999999999999998888777766666555443211
Q ss_pred cccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 429 KVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
.. ...........+.+.+.+. ..+.......|..| +.++++.++.+...+.++.+.+.+.+.+.+
T Consensus 296 ~~---~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 296 GL---GSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred cc---chHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 0111122222333333332 23344446667776 569999999999988777777777774433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=254.00 Aligned_cols=360 Identities=12% Similarity=0.057 Sum_probs=245.2
Q ss_pred HhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH---H-hhhHHHH
Q 009108 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T-AQSVQTM 197 (543)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~l 197 (543)
...+.++.+.+|+|.+.++. |++.+.+.+++.++++++|+++||+|||+++..+.++++++++++. + .++++.+
T Consensus 31 ~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (402)
T TIGR00897 31 LEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI 108 (402)
T ss_pred hHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH
Confidence 33445566678999999998 9999999999999999999999999999999999999998876653 3 3588899
Q ss_pred HHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHH-HHHHHhhcccCCCCCchHHHHHHhHHHHHHHHH
Q 009108 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (543)
Q Consensus 198 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 276 (543)
++.|+++|++.+...+.....+.+++++++|++++|+...+.++|. ++++.+++.+.+. .||+..+|......++..+
T Consensus 109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~ 187 (402)
T TIGR00897 109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA-FGEMNTLWSALAFVLTGGV 187 (402)
T ss_pred HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHHH
Confidence 9999999999888777888889999999999999999999999996 6889988887765 6766555544333322222
Q ss_pred -HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHh
Q 009108 277 -GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355 (543)
Q Consensus 277 -~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 355 (543)
..++.++.++.. +++++++.. +.+..++++++++.++...+...+...
T Consensus 188 ~~~~~~~~~~~~~-~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (402)
T TIGR00897 188 IALFSNKDIFTPQ-HMQTREKFS---------------------------ELGKAATILFTNPNVLLGGMVRIINTI--- 236 (402)
T ss_pred HHHhccCCCCCcc-cccCCcchh---------------------------hHHHHHHHHHcChhHHHHHHHHHHHHH---
Confidence 223334322100 000000000 001123456777766654444333222
Q ss_pred hhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHH-HHHHHHHHHHHHHHHHHhhcccc
Q 009108 356 AGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLT-FSFTGMAASMLLLSLSFTWKVLA 432 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 432 (543)
.......|.|.+.++.|.+.... ......++.+++.++.|+++||++||+... .+.....++.+.+...... .
T Consensus 237 -~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~---~ 312 (402)
T TIGR00897 237 -GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH---F 312 (402)
T ss_pred -HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc---c
Confidence 24455667777778788776644 445567889999999999999999887664 2233333332222221100 0
Q ss_pred cccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHH
Q 009108 433 PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATV 512 (543)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~ 512 (543)
..+.+...+..++++.+... ..+.. ....|..| ++||++.|+.+...++++.++|.+.|.+.|..|+...+++.+++
T Consensus 313 ~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~ 389 (402)
T TIGR00897 313 GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL 389 (402)
T ss_pred CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 01122233333444443332 23333 34556655 57999999999999999999999999999999999999988888
Q ss_pred HHHHHHhhhe
Q 009108 513 CLLAVLYIAV 522 (543)
Q Consensus 513 ~~~~~~~~~~ 522 (543)
.+++.++..+
T Consensus 390 ~~i~~~~~~~ 399 (402)
T TIGR00897 390 YVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHH
Confidence 7776665443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=258.12 Aligned_cols=368 Identities=18% Similarity=0.125 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchh---hHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 186 (543)
+++.+...+......+.+|.+.+++|.+..+. ..|++.+++.++..++++++|+++||+|||+++..+.++.+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 45566667777788889999999999986542 248899999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHH
Q 009108 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (543)
Q Consensus 187 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~ 266 (543)
+++++++++.+++.|++.|++.+ ..+....++.+++++++|++++++...+..+|..++|.+++.+.+. .+||+.|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 177 (408)
T PRK09874 100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS-YGLRPVFFI 177 (408)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence 99999999999999999999865 5677778899999999999999999999999999999999988765 789999999
Q ss_pred hHHHHHHHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 267 AAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 267 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
.+++.++..+.. ++++|+++.. ++++..+.+ +..+.++++..+....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 225 (408)
T PRK09874 178 TASVLFLCFLVTLFCIRENFQPV-SKKEMLHMR-------------------------------EVVTSLKNPKLVLSLF 225 (408)
T ss_pred HHHHHHHHHHHHHHHhccCcccc-cchhhhHHH-------------------------------HHHHhCcCCchHHHHH
Confidence 888776655443 3345543210 000000000 0112233443332222
Q ss_pred H-HHHHHHHHhhhhHHHHHHHHHHHHHcCCCch------hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 009108 346 G-AALFLFQQLAGINAVVYYSTSVFRSVGIESD------VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS 418 (543)
Q Consensus 346 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 418 (543)
. ...... .......+.+.+..+.+.+.. .......+++.+++.+..|++.||++||+.+..+..+..++
T Consensus 226 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 301 (408)
T PRK09874 226 VTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLL 301 (408)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 1 111111 122222333333333222211 11333456777888889999999999999888877766655
Q ss_pred HHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 419 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
.+.+... .+.+...+..++.+.+.+. ..+....++.+..|++.+|+.+++.+....+|..++|.+.|.+.+
T Consensus 302 ~~~~~~~--------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 302 LIPMSFV--------QTPLQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred HHHHHHh--------ccHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence 5544332 0122233333333433332 334444466777888889999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHHHhhheec
Q 009108 499 KFGISTVYLGFATVCLLAVLYIAVNV 524 (543)
Q Consensus 499 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 524 (543)
..|++..|.+.+++.+++.++.++..
T Consensus 373 ~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 373 NYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777665433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=252.61 Aligned_cols=359 Identities=15% Similarity=0.096 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhh-hhHHHHHHHHHHH
Q 009108 112 GAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGAFLCA 189 (543)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~ 189 (543)
..+..++..+...+.+|. +++++|.+..+. |++.+++.++..+.+++.|+++||+||||.++. +.++..++.++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 456666667777787775 678999999888 999999999999999999999999999887654 5666667778889
Q ss_pred HhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhh--hHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHh
Q 009108 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL--GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (543)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~ 267 (543)
++++++.+++.|+++|.+.+...|...+++.|+.++++|++. .++...+.++|..+++.+++.+.+. .+||+.|++.
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~f~~~ 161 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-FGFTVMFLTA 161 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-cccHHHHHHH
Confidence 999999999999999988887888888888999887777654 6788888899999999999988765 7999999999
Q ss_pred HHHHHHHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHH
Q 009108 268 AIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (543)
Q Consensus 268 ~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 346 (543)
++..++..+.. +++||.|++..++. ++.+.++.++++.++.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 207 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSYPRGAPGAL----------------------------------TRLEVRGLLASRDTRLLFVA 207 (375)
T ss_pred HHHHHHHHHHHHHhCCCcccCccccc----------------------------------CcchhhhhhcCcchHHHHHH
Confidence 88776655544 44677654210000 00111234445555544433
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHH
Q 009108 347 AALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLS 423 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 423 (543)
..+.... ......+.+.+. ++.+.++... .........+++.++.|++.||+++|+.+..+..+..+....+.
T Consensus 208 ~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 283 (375)
T TIGR00899 208 CTLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA 283 (375)
T ss_pred HHHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 3322221 122223333333 4567665543 33334455677888999999999999988776655444433332
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Q 009108 424 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIS 503 (543)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~ 503 (543)
... +.+.......+.+.+.+. ..+....+..|..|++ +++++++.+...++|..++|.+.|.+.+..|++
T Consensus 284 ~~~--------~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~ 353 (375)
T TIGR00899 284 ADN--------SLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYH 353 (375)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 210 112222222333333332 2344455677888765 679999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHhhh
Q 009108 504 TVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~ 521 (543)
..|.+.+++.+++.++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 354 AVYWFAIVMLIVALFCLL 371 (375)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 999888888777766553
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-30 Score=253.12 Aligned_cols=344 Identities=16% Similarity=0.147 Sum_probs=247.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh
Q 009108 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 192 (543)
.....+..+.+.|.+|.+.+++|.++++. +++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 44455667788889999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 193 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
+++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++++.+. .+||+.|++.+++.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-FGWQAIFATLFAITL 171 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Confidence 9999999999999998887777888999999999899999999888999999999999988765 799999999888887
Q ss_pred HHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHH
Q 009108 273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLF 352 (543)
Q Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 352 (543)
+..+..++++|+++. + ++++ ++.+++++++++.++...+.......
T Consensus 172 ~~~~~~~~~~~~~~~---~-~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (401)
T PRK11043 172 LLILPTLRLKPSKKA---R-KQSQ------------------------------DALTFKQLLKSKTYLGNVLIFAACSA 217 (401)
T ss_pred HHHHHHHHcCCCCCc---c-ccch------------------------------HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 766655555554321 0 0000 01123455566655543333222221
Q ss_pred HHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 009108 353 QQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKV 430 (543)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (543)
.+.....+.|.+.++.+.+.... ......++.+++.++.+++.||+++|+.........+++.+.+.......
T Consensus 218 ----~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (401)
T PRK11043 218 ----AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS- 292 (401)
T ss_pred ----HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 12334455666667777776544 34445677788999999999999998876665555544443332221110
Q ss_pred cccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 009108 431 LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGI 502 (543)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~ 502 (543)
.......++...+.+.+.+. ..+.......+..| +.+|++.|+.++....++..++.+.|.+.+....
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 293 --HPSLVPLLIPFCVMAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL 360 (401)
T ss_pred --cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence 11122222223333333332 33444445556666 5699999999999999999999999998775443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=264.02 Aligned_cols=386 Identities=22% Similarity=0.203 Sum_probs=279.8
Q ss_pred HHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcccc
Q 009108 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS 211 (543)
Q Consensus 132 ~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 211 (543)
+.+..+.... .+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++.
T Consensus 111 ~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 111 NLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred ceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence 4455555555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhc
Q 009108 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQ 291 (543)
Q Consensus 212 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 291 (543)
...+..++.|++++++|+.++.+ ......|..+++.+++++.. +||+.+++..++.++.++..++.||+|+|+..+
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 99999999999999999999999 66666677777777777753 799999999999988877766668999999999
Q ss_pred CChHHHHHHHHHHhCch----hhHHHHHH---HHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHH
Q 009108 292 GKKSEAEKSIQTLYGKE----RVSEVMLD---LTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYY 364 (543)
Q Consensus 292 ~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (543)
++.+++.+.+++..+.+ ...+.... .+.......+++..+.++++.+..+...+...+.++.....+..
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~g---- 340 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYG---- 340 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHh----
Confidence 99988888877765432 11111111 11112222334466888998886555544444444321111222
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHH
Q 009108 365 STSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTV 444 (543)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (543)
+.......|.+. .......+.....+....+...|+.|||.....+..+..++++...+..... ..+.......
T Consensus 341 l~~~~~~lg~~~-~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 414 (521)
T KOG0255|consen 341 LSLNVSGLGGNI-YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL-----GGWLHWILPL 414 (521)
T ss_pred hhhhhhhcCchH-HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc-----hhHHHHHHHH
Confidence 222223334332 2233444457777888889999999999999999999998888887753311 1012222223
Q ss_pred HHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheec
Q 009108 445 LYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNV 524 (543)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 524 (543)
+...+.+.+.... +.+..|++|+..|+.+.+.......++++++|.+...... ......+.+++.+..+..++...+.
T Consensus 415 ~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 415 LGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence 3333333333333 6689999999999999999999999999999988755443 3333333335666666666666788
Q ss_pred ccCCCCCHHHH
Q 009108 525 VETKGRSLEEI 535 (543)
Q Consensus 525 ~~~~~~~~~~~ 535 (543)
||++.+...+.
T Consensus 493 pet~~~~l~~t 503 (521)
T KOG0255|consen 493 PETKGKPLPGT 503 (521)
T ss_pred cccCCCCCchh
Confidence 99988876544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-30 Score=252.31 Aligned_cols=352 Identities=19% Similarity=0.197 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH
Q 009108 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 188 (543)
..+..+..........+.+|.+.+++|.+..+. ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 344445555556666789999999999999888 999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhH
Q 009108 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (543)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~ 268 (543)
.++++++.+++.|+++|++.+...+....++.|++++++|++++++.+....+|..++|.+++.+.+. .+||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-~g~~~~~~~~~ 164 (392)
T PRK10473 86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-FPWQSLFYTMA 164 (392)
T ss_pred HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cChHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999998887655 79999999988
Q ss_pred HHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHH
Q 009108 269 IPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGA 347 (543)
Q Consensus 269 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 347 (543)
++.++..+. .+++||+++.. ++++... ....++.++++.++...+..
T Consensus 165 ~~~~i~~~~~~~~~~~~~~~~--~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 212 (392)
T PRK10473 165 AMGILVLLLSLFILKETRPAR--APAASSK------------------------------PRENSESLLNRFFLSRLVIT 212 (392)
T ss_pred HHHHHHHHHHHHHcCCCCCcc--cCCccch------------------------------HHHHHHHHhCHHHHHHHHHH
Confidence 877665544 34456654310 0000000 00112344455444333322
Q ss_pred HHHHHHHhhhhHHHHHHHHHH-HHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHH
Q 009108 348 ALFLFQQLAGINAVVYYSTSV-FRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL 424 (543)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 424 (543)
.+.... ......+.+.+ .++.|.+.... .....+++.+++.++.+++.||+++|+.+..+..+..++.+.+.+
T Consensus 213 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 213 TLSVTV----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred HHHHHH----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 11222233333 34567766543 455677888999999999999999999988888777777666654
Q ss_pred HHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccc
Q 009108 425 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIST 504 (543)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~ 504 (543)
... .........+...+++.+... ....+..|.+.++ |.......++..+++.+.+.+.+..|+..
T Consensus 289 ~~~--------~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 289 SPS--------HAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 311 112223233333333322221 1233444544332 34444556777788888888888888765
Q ss_pred chhhhhHHH
Q 009108 505 VYLGFATVC 513 (543)
Q Consensus 505 ~~~~~~~~~ 513 (543)
...+.+.+.
T Consensus 355 ~~~~~~~~~ 363 (392)
T PRK10473 355 WNMLIGILI 363 (392)
T ss_pred hHHHHHHHH
Confidence 444444333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-30 Score=255.35 Aligned_cols=367 Identities=16% Similarity=0.123 Sum_probs=254.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
+..+..+++..+..++......+..|.+++++|+++.+. |++.+.+.+++.+++++.|++.||+|||+++..+.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 334445566677778888888999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC----
Q 009108 183 AGAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---- 255 (543)
Q Consensus 183 i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---- 255 (543)
++++++ +++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++....+.+|..++++++..+..
T Consensus 103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~ 182 (438)
T PRK10133 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999875 4689999999999999999999999999999998877777778999999999999999988764320
Q ss_pred -------------CC--------CchHHHHHHhHHHH-HHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHH
Q 009108 256 -------------NP--------LWWRTMFGLAAIPS-ILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSE 312 (543)
Q Consensus 256 -------------~~--------~~wr~~f~~~~~~~-~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (543)
.. .+||++|+....+. ++..+. ...+||.+.. +++ ++.
T Consensus 183 ~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~-~~~--------------- 243 (438)
T PRK10133 183 HQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-DAK--------------- 243 (438)
T ss_pred ccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc-ccc---------------
Confidence 00 24666665443333 222222 2223442210 000 000
Q ss_pred HHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HH-HcCCCchhH--HHHHHHHHH
Q 009108 313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FR-SVGIESDVA--ASALVGAAN 388 (543)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~ 388 (543)
..+...+.+++++++.++...+..++..... .....|.+.+ .+ ..+.++... ......++.
T Consensus 244 -----------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~ 308 (438)
T PRK10133 244 -----------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCF 308 (438)
T ss_pred -----------ccchhhhHHHHHhCchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Confidence 0001122356677777665554444433332 2222333433 33 357776644 567778899
Q ss_pred HHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccCh
Q 009108 389 VFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS 468 (543)
Q Consensus 389 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 468 (543)
++++++++++.||+++|+.+..+..+..+++++..+. .....+....+.+.+.+. ..|..++...+..|+
T Consensus 309 ~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~glg~~~-i~P~~~s~a~~~~~~ 378 (438)
T PRK10133 309 FIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAFMSI-QYPTIFSLGIKNLGQ 378 (438)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHH-HHHHHHHHHHcccch
Confidence 9999999999999999998888776665555443331 111223334444444443 455666677777775
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cccchhhhhHHHHHHH
Q 009108 469 RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAV 517 (543)
Q Consensus 469 ~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~ 517 (543)
+ .+.+.++.. ...+|+.++|.+.|.+.|..| .+..|++..++.+...
T Consensus 379 ~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred h-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4 677888776 455788999999999999887 6677765444444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-30 Score=251.37 Aligned_cols=369 Identities=17% Similarity=0.063 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 189 (543)
+++.++..+.........+.+.++++.+..+. +++.+.+.+++.++++++|+++||+|||++++++.+++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 9 MAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 44555555544444556667789999988887 9999999999999999999999999999999999999999998888
Q ss_pred HhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHH
Q 009108 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (543)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~ 269 (543)
++.+. ++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.+++++.+. .|+..+.+.+.
T Consensus 87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~ 161 (393)
T PRK11195 87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCAL 161 (393)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 87664 78899999999999999999999999999999999999999999999999999998763 48877777766
Q ss_pred HHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHH
Q 009108 270 PSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (543)
Q Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (543)
..++..+..+.+||++.+...+ +.+..+..++. +..++.+++++..+...+...+
T Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~~~ 216 (393)
T PRK11195 162 IYLLAALFNLFIPRLGARRPGQ--SWNPIALLRDF-----------------------FHACRVLWRDKLGRFSLAGTTL 216 (393)
T ss_pred HHHHHHHHHhcCCCCccccccc--CCCHHHHHHHH-----------------------HHHHHHHHhCchhHHHHHHHHH
Confidence 5555555556677765321111 10000000000 0112355666665544433332
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHh
Q 009108 350 FLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFT 427 (543)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 427 (543)
..............|.+ +.++.++... .....+++.+++.++.+++.||.++++.+..+. +.++..+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~---~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-- 290 (393)
T PRK11195 217 FWGAGATLRFLVLAWAP---VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHH---HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH--
Confidence 22221111222222222 2345555433 566777889999999999999998887776664 333332222221
Q ss_pred hcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhh-hhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccch
Q 009108 428 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI-RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVY 506 (543)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~ 506 (543)
.+.+......++.+.+.+....+. .+...+..|++. +|++.++.+...+++..++..+.+.+ +..|.+..+
T Consensus 291 ------~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (393)
T PRK11195 291 ------HSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVA 362 (393)
T ss_pred ------hHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHH
Confidence 012222333334444444333333 345667666554 69999999999999999999888854 788888888
Q ss_pred hhhhHHHHHHHHhhheec
Q 009108 507 LGFATVCLLAVLYIAVNV 524 (543)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~ 524 (543)
.+.+...+++..+.+.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 363 VIVGFGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666666655554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-30 Score=247.85 Aligned_cols=342 Identities=29% Similarity=0.384 Sum_probs=277.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH
Q 009108 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 188 (543)
+++..+...++.....+..|.+.+++|.+..+. +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 345566777778888889999999999998888 999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhH
Q 009108 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (543)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~ 268 (543)
.+.++++.++++|++.|++.+...+....++.|++|+++|++.+++......+|..+++.+++.+.+. .+||+.+++.+
T Consensus 82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 160 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILA 160 (352)
T ss_pred HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988765 67999999988
Q ss_pred HHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHH
Q 009108 269 IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAA 348 (543)
Q Consensus 269 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 348 (543)
+..++..+...+++ +..+...+.
T Consensus 161 ~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~-- 183 (352)
T cd06174 161 ILGLLLALLLLFLL-------------------------------------------------------RLLLLLALA-- 183 (352)
T ss_pred HHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHH--
Confidence 88777665544332 011112222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHc-CCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChh-HHHHHHHHHHHHHHHHHH
Q 009108 349 LFLFQQLAGINAVVYYSTSVFRSV-GIESDVA--ASALVGAANVFGTAVASSLMDRQGRKN-LLTFSFTGMAASMLLLSL 424 (543)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~ 424 (543)
.+...........+.+.+.++. +.+.... ......++.+++.++.+++.||+++|+ .+..+..+..++.+.+..
T Consensus 184 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 184 --FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred --HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222233455566666666654 5555533 666778899999999999999999999 888888888877777665
Q ss_pred HHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccc
Q 009108 425 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIST 504 (543)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~ 504 (543)
.. +.+...+...+.+.+.+ ...+....+..|..|+++|++.+|+.+...+++..++|.+.|.+.+..+++.
T Consensus 262 ~~--------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~ 332 (352)
T cd06174 262 AP--------SLALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG 332 (352)
T ss_pred hc--------cHHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence 31 12333333444444433 3456666789999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHhhh
Q 009108 505 VYLGFATVCLLAVLYIA 521 (543)
Q Consensus 505 ~~~~~~~~~~~~~~~~~ 521 (543)
.+.+.+++.+++.++.+
T Consensus 333 ~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 333 VFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 99999888888776554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-31 Score=255.64 Aligned_cols=344 Identities=24% Similarity=0.354 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHhhhhHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 188 (543)
++..+...+......+.+| .+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 4566777777888888999 8999999999999 999999999999999999999999999999999999999997777
Q ss_pred HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhH
Q 009108 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (543)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~ 268 (543)
.++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~~~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-FGWRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-CHHCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-ccccccccccc
Confidence 77788889999999999999999999999999999999999999999999999999999999999855 88999999999
Q ss_pred HHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCccc-chhhhhccchhHHHHHH
Q 009108 269 IPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEA-GWFDLFSSRYWKVVSVG 346 (543)
Q Consensus 269 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 346 (543)
++.++..++ ..+++++++....+++.++..+ ++++.. .++.+++++..+...+.
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKESESK------------------------KPKPLKPGFKSLFKNPVLWILLIA 214 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccccccccc------------------------cccccccccccccccchhhhhhhh
Confidence 998887654 3444443331111111111000 000111 25566666666533333
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH-HHHcCCC-chhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 009108 347 AALFLFQQLAGINAVVYYSTSV-FRSVGIE-SDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLL 422 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 422 (543)
.....+. +.....+.+.+ .+..+.+ .... ......+..+++.++.+++.||+++++..........+..+.+
T Consensus 215 ~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (352)
T PF07690_consen 215 FFLFFFV----FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGL 290 (352)
T ss_dssp HHHHHHH----HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH----HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 3333222 34456666665 4556666 3433 4667778888889999999999999877777666666555555
Q ss_pred HHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHH
Q 009108 423 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 490 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 490 (543)
...... .+..+......+.+.+.+. ..+....+..+..|++.+|++.|+.+...++++.++|
T Consensus 291 ~~~~~~-----~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 291 LLLPFS-----SSPVWLIIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCSHHH-----CHHHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 432111 1123333344444443332 3556666889999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=253.30 Aligned_cols=363 Identities=19% Similarity=0.196 Sum_probs=265.7
Q ss_pred HHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhcc
Q 009108 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIG 209 (543)
Q Consensus 132 ~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g 209 (543)
.+++++.++. +++.+.++.|+.+++++.|++.||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|
T Consensus 66 ~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 66 GEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG 143 (466)
T ss_pred ceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence 3677888887 9999999999999999999999999999999999999999999998874 55678999999999999
Q ss_pred ccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc-CCChhHH
Q 009108 210 ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS-PESPRWL 288 (543)
Q Consensus 210 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~ 288 (543)
..+|+...+.++|.|++||++..++...+..+|.+++..++|++.+...||+++|++.++.+++..++++++ .|+|..
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~- 222 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK- 222 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-
Confidence 999999999999999999999999999999999999999999988766899999999999999877766554 666652
Q ss_pred HhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009108 289 FQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV 368 (543)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (543)
.+.-.++..+.+++ -+.++..+++.+.+|+++++++..|.++++.+..... +..+..|.|.+
T Consensus 223 -h~~is~~El~~I~~-------------~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~----~~~l~~y~PtY 284 (466)
T KOG2532|consen 223 -HPNISEKELKYIEK-------------GKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWG----FYLLLTYLPTY 284 (466)
T ss_pred -CCCCCHHHHHHHHh-------------cccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHH----HHHHHHHhhHH
Confidence 11111111111110 0001111112578999999999998888776666554 66777778887
Q ss_pred HHH-cC--CCchhHHHHHHHHHHHHHHHHHHHhhhccCCh--------h-HHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009108 369 FRS-VG--IESDVAASALVGAANVFGTAVASSLMDRQGRK--------N-LLTFSFTGMAASMLLLSLSFTWKVLAPYSG 436 (543)
Q Consensus 369 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (543)
+++ ++ ....+....+..+...+..+++|.++||..+| | .-.++....+++++.+.+. +....
T Consensus 285 ~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~------~~~~~ 358 (466)
T KOG2532|consen 285 LKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT------SDEHR 358 (466)
T ss_pred HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec------CCCcc
Confidence 775 34 44556688888999999999999999987552 1 2223333333333333332 11112
Q ss_pred hhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH---hhccccchhhhhHHH
Q 009108 437 TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN---KFGISTVYLGFATVC 513 (543)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~---~~g~~~~~~~~~~~~ 513 (543)
+..++ ++.+..+......+-.+....+. .+++.+..+|+.+.+..+.++++|.+.|.+.. ...|+.+|++.+++.
T Consensus 359 ~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~ 436 (466)
T KOG2532|consen 359 LLAVI-LLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGIL 436 (466)
T ss_pred hHHHH-HHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHH
Confidence 22222 22222222222222222122232 45779999999999999999999999999983 346899999999999
Q ss_pred HHHHHhhhee
Q 009108 514 LLAVLYIAVN 523 (543)
Q Consensus 514 ~~~~~~~~~~ 523 (543)
+++.++..++
T Consensus 437 ~~~~i~f~~f 446 (466)
T KOG2532|consen 437 IVGNIIFLFF 446 (466)
T ss_pred HHhchheeEe
Confidence 9888765554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=247.60 Aligned_cols=356 Identities=13% Similarity=0.088 Sum_probs=256.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH
Q 009108 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 185 (543)
+.+++...+..++..+...+..|.+++++|++..+. |++.+.+.+++.+++++.|++.||+|||++++.++++++++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 345566777888888888999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHH---hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC------
Q 009108 186 FLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN------ 256 (543)
Q Consensus 186 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~------ 256 (543)
+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88654 468999999999999999999999999999999999999999999999999999999988766321
Q ss_pred -------------------CCchHHHHHHhHHHHHHHHHHhcc--cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHH
Q 009108 257 -------------------PLWWRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVML 315 (543)
Q Consensus 257 -------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (543)
..+||++|++.+++.++..+...+ .||.++ + +.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~----~-~~~~------------------- 218 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH----S-DAKQ------------------- 218 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cccc-------------------
Confidence 135999999998877665544433 233211 0 0000
Q ss_pred HHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc--CCCchhH--HHHHHHHHHHHH
Q 009108 316 DLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--GIESDVA--ASALVGAANVFG 391 (543)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~ 391 (543)
.+...+.++++|++.++...+..+++...+ .....|.+.+.++. +.+.... .......+..+|
T Consensus 219 ---------~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vG 285 (410)
T TIGR00885 219 ---------ISFSASLSRLARIRHYREGVIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFIS 285 (410)
T ss_pred ---------ccchhhHHHHHhChhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 001112345666777666555555544443 33345555555543 2222211 344445677899
Q ss_pred HHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhh
Q 009108 392 TAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 471 (543)
Q Consensus 392 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 471 (543)
+++++++.||+++|+.+.++..+.++.+++.... ..........+.+++.+ ...|..++...+..+++.+
T Consensus 286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---------~~~~~~~~l~~~glf~s-~~fp~i~sl~~~~~g~~~~ 355 (410)
T TIGR00885 286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---------GGHVGLYCLTLCSAFMS-LMFPTIYGIALKGLGQDTK 355 (410)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhh
Confidence 9999999999999998888777766666665542 11223344444444443 3447777788888887755
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHhh------ccccchhhhhHH
Q 009108 472 AKAVALSLGMHWISNFVIGLYFLSVVNKF------GISTVYLGFATV 512 (543)
Q Consensus 472 ~~~~g~~~~~~~~g~~~~~~~~g~~~~~~------g~~~~~~~~~~~ 512 (543)
..+.++...+ +|+++.|++.|.+.|.. +++..|++-..+
T Consensus 356 ~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 356 YGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred hhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 4455544443 99999999999999964 355666653333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=249.12 Aligned_cols=360 Identities=18% Similarity=0.188 Sum_probs=240.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHcCC--CcchhhHHHHHHH--HH---HHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH
Q 009108 114 ILFGYHLGVVNGALEYLAKDLGI--AENTVLQGWIVSS--LL---AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (543)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~g~~~s~--~~---l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 186 (543)
+.+.++...+++..+.+.+++.. ++++. +.+.+. +. ++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 80 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLV--ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTL 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 45677788888888888888653 34444 444433 33 33447899999999999999999999999999999
Q ss_pred HHHHhhhHH--------HHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC---
Q 009108 187 LCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG--- 255 (543)
Q Consensus 187 ~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~--- 255 (543)
+++++++++ .++++|+++|++.+...+....++.|++++++|+++.++...+..+|.+++++++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 81 LIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred HHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998875 488999999999999999999999999999999999999999999999999887655421
Q ss_pred ----CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccch
Q 009108 256 ----NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331 (543)
Q Consensus 256 ----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (543)
...+||+.|++.+++.++..+.....+|++++..++++ +++.+.++
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 210 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK------------------------------HKKKRGPI 210 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc------------------------------cccccCCH
Confidence 23689999988877766655554455666542111100 01122334
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHH
Q 009108 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLL 408 (543)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 408 (543)
++.++++.... ....... +.....+.....+.+.+. +..+.+.... ......++.+++.++.|++.||++||+.+
T Consensus 211 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 211 RETLTKHRKPF-LLGLGLV-IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHhchHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 45555544111 1111111 122222444555666665 4466655533 45566788889999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHH-HHHHHHHH
Q 009108 409 TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL-GMHWISNF 487 (543)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~ 487 (543)
.....+..+..+.+..... ...+.+......++.+.+.+. ..+....++.|.+|++.|+++.++.+ ....+|..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ 363 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALL----DSGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGG 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhh
Confidence 6554444333221111110 001122223333333333332 34455668899999999999999854 44567888
Q ss_pred HHHHhhHHHHHhhc-cccchhhhhHH
Q 009108 488 VIGLYFLSVVNKFG-ISTVYLGFATV 512 (543)
Q Consensus 488 ~~~~~~g~~~~~~g-~~~~~~~~~~~ 512 (543)
++|.+.|.+.|+.| +...++...++
T Consensus 364 ~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 364 FAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 99999999999988 55555444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=245.48 Aligned_cols=354 Identities=14% Similarity=0.065 Sum_probs=244.9
Q ss_pred HHHHHHHHhhhhH-HHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhh
Q 009108 115 LFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS 193 (543)
Q Consensus 115 ~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~ 193 (543)
+.........+.+ +++++++|++..+. |++.+.+.+...+.+++.|+++||+|||++++.+.++.+++.++++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~ 98 (400)
T PRK11646 21 LVVLGFFVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE 98 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333334434444 45788999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHH
Q 009108 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (543)
Q Consensus 194 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~ 273 (543)
++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++. . .+||+.|++.++..++
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-~g~~~~f~~~~~~~~~ 176 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-YDFRLVCATGAVLFVL 176 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHH
Confidence 9999999999999998888888999999999999999999999999999999999999987 4 7999999998877665
Q ss_pred HHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHH
Q 009108 274 LALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLF 352 (543)
Q Consensus 274 ~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 352 (543)
..+. .++.||.+. ++..++ .+.+++++++++.++...+.......
T Consensus 177 ~~i~~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (400)
T PRK11646 177 AAAFNAWLLPAYKL----STVRTP------------------------------VREGMTRVLRDKRFVTYVLTLTGYYM 222 (400)
T ss_pred HHHHHHHhCCcccc----cccchh------------------------------hHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 5433 333454211 000000 01123455666655543333222221
Q ss_pred HHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhh-ccCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 009108 353 QQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMD-RQGRKNLLTFSFTGMAASMLLLSLSFTWK 429 (543)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (543)
. ......+.|.+.++.+.++... ......+..+.+....+++.| |++.++.+..+..+.+++.+++....
T Consensus 223 ~----~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--- 295 (400)
T PRK11646 223 L----AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--- 295 (400)
T ss_pred H----HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---
Confidence 1 2223345666666654444332 334444444444444455554 56666666666666666655554321
Q ss_pred ccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc----cccc
Q 009108 430 VLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG----ISTV 505 (543)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g----~~~~ 505 (543)
+.+...+...+++.+.. ...+...+++.+..|++.+|+++|+.+...++|..++|.+.|.+.|..+ ....
T Consensus 296 -----~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~ 369 (400)
T PRK11646 296 -----NLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELP 369 (400)
T ss_pred -----hHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchH
Confidence 11222222333333333 2334555678899999999999999999999999999999999998753 3445
Q ss_pred hhhhhHHHHHHHHh
Q 009108 506 YLGFATVCLLAVLY 519 (543)
Q Consensus 506 ~~~~~~~~~~~~~~ 519 (543)
+...+++.+++.+.
T Consensus 370 ~~~~~~~~~~~~~~ 383 (400)
T PRK11646 370 WMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=248.95 Aligned_cols=372 Identities=19% Similarity=0.143 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-----cccch-hhhhhHHHHHH
Q 009108 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQLDAVPLAAG 184 (543)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~ 184 (543)
+..+..+......++.+|...++.|.+.+++ |.+ +.....+ ++.+++|+++||+ |||+. ++.+.+..+++
T Consensus 19 ~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~ 94 (491)
T PRK11010 19 ILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVA 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHH
Confidence 3345555666677889999999999998888 776 4444444 6889999999999 99885 66777777777
Q ss_pred HHHHHHh---hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchH
Q 009108 185 AFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (543)
Q Consensus 185 ~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr 261 (543)
..++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+...|||
T Consensus 95 ~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr 174 (491)
T PRK11010 95 IAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ 174 (491)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 7777775 4788899999999999998899999999999999999999999999999999999999888876336999
Q ss_pred HHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
..|++.+++.++..+..++.||+++.. +++++. .+ ....+++++++++..+
T Consensus 175 ~~f~i~a~l~ll~~l~~~~~~e~~~~~--~~~~~~-~~--------------------------~~~~~l~~~~~~~~~~ 225 (491)
T PRK11010 175 GMYWLMAALLIPCIIATLLAPEPTDTI--PVPKTL-EQ--------------------------AVVAPLRDFFGRNNAW 225 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccc--ccccch-hh--------------------------hHHHHHHHHHcCcCHH
Confidence 999999988777666555667764311 000000 00 0011244556555555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HH-HHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--AS-ALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS 418 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 418 (543)
...+...+..... ........+++.+..|++.... .. ....++.+++.+++|+++||+++|+.+..+.++.++.
T Consensus 226 ~~ll~~~l~~~~~---~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 226 LILLLIVLYKLGD---AFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4443333332221 1222233344445578777755 22 2334688899999999999999988777666555554
Q ss_pred HHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 419 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
.+.+...... ..+........++.....+.+. +...++..+..+++.+++..|+.+...++|..+++.+.|.+.|
T Consensus 303 ~l~~~~l~~~----~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 303 NAGYWLLSIT----DKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred HHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333221110 0111111212222111122222 2234567788888889999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHHHhhhee
Q 009108 499 KFGISTVYLGFATVCLLAVLYIAVN 523 (543)
Q Consensus 499 ~~g~~~~~~~~~~~~~~~~~~~~~~ 523 (543)
..||+..|.+.+++++++.++....
T Consensus 378 ~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 378 AHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998988888888876665544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=244.98 Aligned_cols=363 Identities=15% Similarity=0.119 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHhhhhH-HHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH
Q 009108 112 GAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT 190 (543)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 190 (543)
..+..........+.+ +++.+++|++..+. |++.+++.+++.+++++.|+++||+|||++++++.++.+++.++.++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~ 92 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL 92 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence 3444445555555554 46778899999999 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHH
Q 009108 191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (543)
Q Consensus 191 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~ 270 (543)
+++++.++++|++.|.+.+...+...++..|.+++++|++++++.....++|..++|.+++++.. .+|+..|++.++.
T Consensus 93 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f~~~~~~ 170 (395)
T PRK10054 93 VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPFWLAAIC 170 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHH
Confidence 99999999999999988887788889999999999999999999999999999999999998863 6899999988877
Q ss_pred HHHHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHH
Q 009108 271 SILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (543)
Q Consensus 271 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (543)
.++..+.. +++||+++. ++++++ + ..+.++.++++.++...+...+
T Consensus 171 ~~i~~i~~~~~~~~~~~~---~~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~l 217 (395)
T PRK10054 171 SAFPLVFIQIWVQRSEKA---IATETG--S----------------------------VWSPSVLLQDKALLWFTCSGFL 217 (395)
T ss_pred HHHHHHHHHHHHhccccc---cccchh--h----------------------------hhhhhhhccCceehHHHHHHHH
Confidence 76654433 334544321 000000 0 0011345667766655544444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHh
Q 009108 350 FLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFT 427 (543)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 427 (543)
..+...........|.+.. .+.+.+.... ......+..+......+++.||.++|+.+..+..+..++...+.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 295 (395)
T PRK10054 218 ASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG- 295 (395)
T ss_pred HHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-
Confidence 3333222222333333332 2233333322 33334444555667888999999999988888777777666554320
Q ss_pred hcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchh
Q 009108 428 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYL 507 (543)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~ 507 (543)
.+.+...+...+++.+.. ...|....++.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.|+...|.
T Consensus 296 ------~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~ 367 (395)
T PRK10054 296 ------NSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFV 367 (395)
T ss_pred ------hHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHH
Confidence 012223333444444432 224455567888889999999998765 677899999999999999999888887
Q ss_pred hhhHHHHHHHHhhh
Q 009108 508 GFATVCLLAVLYIA 521 (543)
Q Consensus 508 ~~~~~~~~~~~~~~ 521 (543)
+.+++..+..++..
T Consensus 368 ~~~~~~~~~~~~~~ 381 (395)
T PRK10054 368 ILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666665555444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=248.90 Aligned_cols=378 Identities=16% Similarity=0.156 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVV-NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (543)
+.++..++...+....+...+ .+.+..+.+|.+...++. +++.++|+++|+++++++|.+.||++..+.+....+++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 344444444444444444322 223334558899988898 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC-----C
Q 009108 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-----N 256 (543)
Q Consensus 182 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-----~ 256 (543)
++..++....+|++.+++.|++.|+.+++.+|....+++.|+.++||++.++++.+..++|.++|.+++..+.. .
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 99998888899999999999999999999999999999999999999999999999999999999999877421 2
Q ss_pred CCchHHHHHHhHHHHHHHHHH-hcccCCChhH--HHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhh
Q 009108 257 PLWWRTMFGLAAIPSILLALG-MGLSPESPRW--LFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD 333 (543)
Q Consensus 257 ~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (543)
..||||.|++.++++++..++ ++++|++|.. ...++++.-..+..++ .......++.++..+++
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 268 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRE-------------SPSGGIENKFKWKGFKE 268 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHh-------------ccCCCcccccCHHHHHH
Confidence 378999999999999887655 4556998872 2111111111111100 00001111135566778
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhhhcc----CChh
Q 009108 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLMDRQ----GRKN 406 (543)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~----g~~~ 406 (543)
.++++..|...+..++.... .+.+.+|+|.++++ .+++.... +.....++++++.+++|+++||+ .+|.
T Consensus 269 a~~dp~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~ 344 (495)
T KOG2533|consen 269 ALKDPGVWPFSLCYFFLKLV----NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRL 344 (495)
T ss_pred HHhchhHHHHHHHHHHHhhc----cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 88888888877766666554 55667777777777 34655544 67778899999999999999994 4444
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCccccccccccccc-ChhhhhHHHHHHHHHHHH
Q 009108 407 LLTFSFTGMA-ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIF-ASRIRAKAVALSLGMHWI 484 (543)
Q Consensus 407 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~ 484 (543)
.......+.. ++...+... .........++.+........++.....++.. +...+-+..++.....+.
T Consensus 345 ~~~~~~~~~~~~g~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s 415 (495)
T KOG2533|consen 345 LFIVFLCLYAIIGAISLLAA---------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGS 415 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhh---------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhH
Confidence 4443333333 222333221 11111111111111111112233333444444 444455556666666666
Q ss_pred HHHHHHHhhHHHH-Hhhccccchhh
Q 009108 485 SNFVIGLYFLSVV-NKFGISTVYLG 508 (543)
Q Consensus 485 g~~~~~~~~g~~~-~~~g~~~~~~~ 508 (543)
++.++|.+.-... .++++...|..
T Consensus 416 ~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 416 AGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HHHhhhhhcccccCcchhhhhHHHH
Confidence 6666666554433 23566666633
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=238.83 Aligned_cols=331 Identities=18% Similarity=0.187 Sum_probs=237.6
Q ss_pred HHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHH
Q 009108 119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMI 198 (543)
Q Consensus 119 ~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 198 (543)
......+.+|.+.+++|.+.++. +++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.++
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~ 91 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLF 91 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence 34566889999999999999999 999999999999999999999999999999999999988888877 789999999
Q ss_pred HHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCC-chHHHHHHhHHHHHHHHHH
Q 009108 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL-WWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 199 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~ 277 (543)
+.|++.|++.+...+....++.|+++ ++|++++++...+.++|..+++.+++.+.+... +||+.|.+.++..++..+
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~- 169 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL- 169 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-
Confidence 99999999999888888888999986 579999999999999999999988887765422 499999877665443322
Q ss_pred hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhh
Q 009108 278 MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAG 357 (543)
Q Consensus 278 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 357 (543)
.++|+.++ ++++ +++.++...++++|++..+...+...+... .
T Consensus 170 -~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 212 (355)
T TIGR00896 170 -AWIPQVRR----RVAA----------------------------NQTTTRLTPVRIWRSPLAWQVTVFFGLQSG----L 212 (355)
T ss_pred -HHhhhhcc----ccCC----------------------------CCCCCCCCCchhhcCHhHHHHHHHHHHHHH----H
Confidence 22333221 0000 000011234556677666554433332222 2
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccC-ChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQG-RKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
+.....+.|.++++.+.+.... ......++.++++++.|++.||++ ||+.+..+..+.+++.+.+.+...
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 285 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM------- 285 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-------
Confidence 4455566777777777766543 666678899999999999999994 565666666666666655543211
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccc-cccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLP-EIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 501 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g 501 (543)
.... ....+++.+.+. ..+.....+. +..+++.++...++.+...+++..++|.+.|.+.|+.|
T Consensus 286 -~~~~-~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 286 -HGLW-AWALVLGLGQGG-AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -hHHH-HHHHHHHHhhhh-HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 123334443332 2333333343 34456678999999999999999999999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=240.80 Aligned_cols=333 Identities=20% Similarity=0.229 Sum_probs=231.3
Q ss_pred HHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHH
Q 009108 118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (543)
Q Consensus 118 ~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 197 (543)
+...++.|.+|.+.+++|++.++. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 345567789999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 198 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
++.|+++|++.+...+...+++.|++++++|++++++...+..+|..++|.+++.+.+. .+||+.|++.+++.++..+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-FSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999888765 78999999888877665443
Q ss_pred -hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhh
Q 009108 278 -MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLA 356 (543)
Q Consensus 278 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (543)
.+++||+++.. ++++.+.++ ...+++++++++..+...+...+...
T Consensus 162 ~~~~~~~~~~~~--~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---- 208 (377)
T PRK11102 162 VFFFIPETLPKE--RRQPFHLRT---------------------------TIRNFASLFRHKRVLGYMLASGFSFA---- 208 (377)
T ss_pred HHHhCCccCccc--ccCCCChHH---------------------------HHHHHHHHHcChHHHHHHHHHHHHHH----
Confidence 44556654310 000000000 01123345566555443333222221
Q ss_pred hhHHHHHHHHH-HHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 357 GINAVVYYSTS-VFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
.......+.+. +.+..+.++... ......++.+++.++.+++.||+|+|+.+..+..+..+..+.+...... +
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~ 284 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL----D 284 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 12222333333 334467665543 5566778888999999999999999998888776544433332221110 0
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHH-HHHHHHHHh
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHW-ISNFVIGLY 492 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~ 492 (543)
...+...+...++..+... .......+..|..| +.++++.++.+.... ++..+++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 285 LGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222222233322222 22223335667766 679999999877654 445555544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-28 Score=236.39 Aligned_cols=358 Identities=13% Similarity=0.078 Sum_probs=257.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchh----hhhhHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF----QLDAVPLAAGA 185 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~ 185 (543)
.+..+...+..+...|.+|.+.+++|.+..++ |++.+++.+...++++++|+++||+|||+.. ..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-- 85 (382)
T TIGR00902 10 ALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--
Confidence 45566666777888899999999999999999 9999999999999999999999999985433 222222222
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHH
Q 009108 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (543)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~ 265 (543)
..+.++++++.+++.|+++|.+.+...|...++..++ .++|++++|....+.++|.+++|.+++.+.+. .|||..|+
T Consensus 86 ~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-~g~~~~f~ 162 (382)
T TIGR00902 86 AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-FDEQNILA 162 (382)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-cChhHHHH
Confidence 2445678999999999999999888888888887664 46789999999999999999999999998876 79999998
Q ss_pred HhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 266 LAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 266 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
+.++..++..+.. .++|+++. +++.++ ++.++..++++++|++.++...+
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~l~ 212 (382)
T TIGR00902 163 ILTAGLAFMLIGF-LIKPTIPP---KDAIPE--------------------------DESQGDSAFIALLKNPMNLRFLA 212 (382)
T ss_pred HHHHHHHHHHHHH-HcCCCCCC---Cccccc--------------------------cccccchhHHHHHcChHHHHHHH
Confidence 8766533333333 33333210 000000 00011223567788888777666
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLS 423 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 423 (543)
...+.... ......+.+.+.++.|.+.... ......++.+++.++.+++.||+++|+.+.++.+...+....+.
T Consensus 213 ~~~l~~~~----~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 213 AVCLIQGA----HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 55554433 3334445566667788876644 45556778888899999999999999999998888888877766
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHhhcc
Q 009108 424 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLG-MHWISNFVIGLYFLSVVNKFGI 502 (543)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~~~~~~g~ 502 (543)
+.. +.+..+....+.+..++.... ....++++. |++.++++.++++. ...+|..++|.+.|.+.|+.|+
T Consensus 289 ~~~--------~~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~ 358 (382)
T TIGR00902 289 AIE--------AFPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA 358 (382)
T ss_pred hHh--------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 531 223344445555555554333 344477777 88899999999874 5678999999999999999985
Q ss_pred ccchhhhhHHHHHHHHh
Q 009108 503 STVYLGFATVCLLAVLY 519 (543)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ 519 (543)
..|.+.+++.+++.++
T Consensus 359 -~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 359 -GTFVFMAIIAAAAFFL 374 (382)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 6677777777665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=237.20 Aligned_cols=342 Identities=18% Similarity=0.158 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH
Q 009108 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT 190 (543)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 190 (543)
+..+...+......+.+|.+.+++|.++.+. +++.+++.+++.++++++|+++||+|||+++..+.++..++.+++.+
T Consensus 15 ~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 92 (394)
T PRK11652 15 LLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF 92 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3334555666777889999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHH
Q 009108 191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (543)
Q Consensus 191 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~ 270 (543)
+++++.+++.|++.|++.+...+....+..|+++++++++++++...+..+|..++|.+++.+.+. .+||+.|++.++.
T Consensus 93 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~f~~~~~~ 171 (394)
T PRK11652 93 AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGWRACYLFLLLL 171 (394)
T ss_pred HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHH
Confidence 999999999999999999888788888899999999999999999999999999999999988765 7899999998877
Q ss_pred HHHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHH
Q 009108 271 SILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (543)
Q Consensus 271 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (543)
.++..+ ..++.||+++. ++++.+ .+..++++++++.++...+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~---~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 218 (394)
T PRK11652 172 GAGVTFSMARWMPETRPA---DARRTR------------------------------VLASYRTLLSNRRFNCYLLMLIG 218 (394)
T ss_pred HHHHHHHHHHhCCccCcc---ccchhH------------------------------HHHHHHHHHcChHHHHHHHHHHH
Confidence 665443 34456775431 000000 01123345556655544433222
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHH
Q 009108 350 FLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSF 426 (543)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 426 (543)
... .......+.+.++++ .+.+.... ......++.+++.++.+++.||.+++... ......++.+.+....
T Consensus 219 ~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~ 292 (394)
T PRK11652 219 TLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPG 292 (394)
T ss_pred HHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 221 122223333334444 66665543 34445667777888888888888733222 2222222222221111
Q ss_pred hhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 427 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
.. .....+.......+.+.+.+. ..+....+..|..| +.+|++.++.+....+|+.+++.+.+.+.+.
T Consensus 293 ~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 293 WF---GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred Hh---ccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 00 001122233333444444443 34455556778777 5689999999999999999999998877554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=248.71 Aligned_cols=405 Identities=15% Similarity=0.159 Sum_probs=284.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
+-|.+++..++......-....++...+.++++|+.+.+++ +|+.++....+.+..|+.+.+.||+|.|.+.+.|.++
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 34555555555544444444555678999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHH-HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 009108 181 LAAGAFLCATAQSVQTMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (543)
Q Consensus 181 ~~i~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 259 (543)
.+++.++.+|++++|++++.. ++.|+|.|..+.....++..||+++ |+.+.|+...+.++|.++-|.+...+.+. .|
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~-~G 198 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSK-YG 198 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHH-hC
Confidence 999999999999999999988 9999999999999999999998765 99999999999999988888888787766 89
Q ss_pred hHHHHHHhHHHHHHHHHHhccc-CCChhHHHh--cCChH--HHHHHH-----HHHh--CchhhH---HHHHHHHHhccCC
Q 009108 260 WRTMFGLAAIPSILLALGMGLS-PESPRWLFQ--QGKKS--EAEKSI-----QTLY--GKERVS---EVMLDLTNAGQGS 324 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~--~~~~~--~~~~~~-----~~~~--~~~~~~---~~~~~~~~~~~~~ 324 (543)
||+.+++.+.+.+-.++....+ |..++.... ++... ...+.. .+.. .....+ ......+....+.
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKW 278 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccc
Confidence 9999999998887666555444 423221000 00000 000000 0000 000000 0000011111111
Q ss_pred ---CCcccch---hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHH
Q 009108 325 ---AEPEAGW---FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVAS 396 (543)
Q Consensus 325 ---~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g 396 (543)
..+.... .++++++.++.+.+...+..+ ++.....+++.+.++.+++.... .....++..++++++.|
T Consensus 279 ~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~----g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 279 RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL----GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence 1111222 577888777666665555544 36777778888888888887755 66778899999999999
Q ss_pred HhhhccCChhHH--HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHH
Q 009108 397 SLMDRQGRKNLL--TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 474 (543)
Q Consensus 397 ~l~d~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 474 (543)
+++|+...++.. .++.+...++.+.+.+. .+.........+++...+ ....+...++.|+.+.++-..+
T Consensus 355 ~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a 425 (509)
T KOG2504|consen 355 LLADKPGIRALVLFLLTLLIAGLARLFLPFA--------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNA 425 (509)
T ss_pred hhcCccccchHHHHHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchH
Confidence 999998844433 34444444444333332 112233333333333333 2344444578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhc-cccchhhhhHHHHHHHHhhhe
Q 009108 475 VALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 475 ~g~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 522 (543)
.|+...+..++..+||++.|.+.|..| |...|...+++.+++.++.++
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 999999999999999999999999988 888898888888887765443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-28 Score=236.77 Aligned_cols=373 Identities=16% Similarity=0.116 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHh-hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcc-cchhhhhhHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVV-NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFL 187 (543)
Q Consensus 110 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~ 187 (543)
++..+......++. +++.+++.+++|++..++ |++.+++.++..++++++|.++||+|| |+++.++.++.+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34444555555554 556678888899999999 999999999999999999999999965 77888888888888888
Q ss_pred HHHhhhHHHHHHHHHHHhhhccccccchhhhhh--------ccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 009108 188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYIS--------EISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (543)
Q Consensus 188 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 259 (543)
+.+.++++.+++.|++.|++.+...+...++.. |......|.+.+| .+|.++++++++.+... ..
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-~~ 158 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-LS 158 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-ch
Confidence 899999999999999999987766665555432 2222233445554 36777778887766322 34
Q ss_pred hHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccch
Q 009108 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (543)
|+. |++.++..++..+..+++||+|+.. ++++.+..+ ....+.++++|++.
T Consensus 159 ~~~-f~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~--------------------------~~~~~~~~~~k~~~ 209 (418)
T TIGR00889 159 NIQ-LYITAGSSALLGVFALTLPDIPVAK--STAKMSIKV--------------------------MLGLDAFILFKNKR 209 (418)
T ss_pred hHH-HHHHHHHHHHHHHHHhcCCCCCCCc--cccccCHHH--------------------------HhhhhHHHHhcCCC
Confidence 654 5555655555555566678875310 100000000 00112334666666
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCc----------hhHHHHHHHHHHHHHHHHHHHhhhccCChhHHH
Q 009108 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES----------DVAASALVGAANVFGTAVASSLMDRQGRKNLLT 409 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 409 (543)
++...+..++.... ......+.+.+.++.+.++ .........+..+++.+..|++.||+|+|+.+.
T Consensus 210 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~ 285 (418)
T TIGR00889 210 MAIFFFFSMLLGAP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML 285 (418)
T ss_pred eeeHHHHHHHHHhH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 65554444433222 2223344455555555332 233556667788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHH-HHHHHHHHH
Q 009108 410 FSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL-GMHWISNFV 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~ 488 (543)
.+.++..++..++..... .....+...+..++.+.+.+. ..+....++.|.+|++.|+++.|+.+ ....+|.++
T Consensus 286 ~~~~~~~v~~~l~~~~~~----~~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 286 LSLVAWALRFGFFAYGDP----EYFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHHHHHHcCc----chhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 988877777655544200 000112222333444444332 23444557899999999999999997 567899999
Q ss_pred HHHhhHHHHHhh------ccccchhhhhHHHHHHHHhhheecccCCC
Q 009108 489 IGLYFLSVVNKF------GISTVYLGFATVCLLAVLYIAVNVVETKG 529 (543)
Q Consensus 489 ~~~~~g~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (543)
+|.+.|.+.|+. ||+..|.+.+++.+++.++.+++.+++++
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999984 47788888888888887777777776654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=233.06 Aligned_cols=355 Identities=12% Similarity=0.088 Sum_probs=228.8
Q ss_pred HHHHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHH-HHHHHHHhhHhhhhhhcccchh-hhhhHHHHHHHHHHH
Q 009108 113 AILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTF-QLDAVPLAAGAFLCA 189 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~ 189 (543)
.+..+.......|.+|. +.+++|.+.++. |++.+.+.+ ++.++++++++ +||+||||.+ +.+.++.+++..+.+
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence 45555555555665554 688999999998 999876655 66666655566 9999999875 556666677888888
Q ss_pred HhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccc--hhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHh
Q 009108 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (543)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~ 267 (543)
++++++.+++.+.+.|...+...+....++.++.++++| +...++...+.++|.+++|.+++.+.+. .|||+.|++.
T Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~gw~~~f~~~ 179 (393)
T PRK15011 101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-FSFTVMYLSA 179 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cChHHHHHHH
Confidence 999999987766555555556777888888888876655 3456788889999999999999998765 7999999999
Q ss_pred HHHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhcc-chhHHHHH
Q 009108 268 AIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS-RYWKVVSV 345 (543)
Q Consensus 268 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 345 (543)
++..++..+. .+++||.++. +++.++ + . ....++ +..+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~----------------------------~---~~~~~~~~~~~~~~~ 223 (393)
T PRK15011 180 AVAFIVCGVMVWLFLPSMRKE---LPLATG--T----------------------------L---EAPRRNRRDTLLLFV 223 (393)
T ss_pred HHHHHHHHHHHHhhcCccCCC---Cccccc--c----------------------------c---cccccccccHHHHHH
Confidence 8877765554 3445765431 100000 0 0 000011 11121111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLL 422 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 422 (543)
...... ..+.....+.|.+. +..+.+.... ......++.+++.++.|+++||+++|+.+..+.....+....+
T Consensus 224 ~~~~~~----~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~ 299 (393)
T PRK15011 224 ICTLMW----GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM 299 (393)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 111111 12333334555544 4467665543 3344456677889999999999999987776654444433322
Q ss_pred HHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 009108 423 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGI 502 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~ 502 (543)
... .+.+..+....+.+...+.. .+....+..|..|+ .++++.++++...++|..++|.+.|.+.|..|+
T Consensus 300 ~~~--------~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~ 369 (393)
T PRK15011 300 LMA--------HSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNY 369 (393)
T ss_pred HHH--------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 01122222222222222211 11223456788885 499999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHhhh
Q 009108 503 STVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~ 521 (543)
+..+.+.+++.+++.++.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 370 HAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887777777665544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=238.84 Aligned_cols=373 Identities=14% Similarity=0.050 Sum_probs=229.1
Q ss_pred HHHHHHHHHhhhhHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH---
Q 009108 114 ILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--- 189 (543)
Q Consensus 114 ~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--- 189 (543)
+...+..+...+.+| ++.+++|++..+. |++.+++.+++.++++++|+++||+|||++++++..+.+++.....
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 97 (420)
T PRK09528 20 FFFFFIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445554 5566699999998 9999999999999999999999999999999887766655443221
Q ss_pred Hhhh-----HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHH
Q 009108 190 TAQS-----VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (543)
Q Consensus 190 ~~~~-----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f 264 (543)
.++. +...++++++.|.+.....+....+..+ . .+++++.++......++|..++|.+++.+.+ .+|++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~f 173 (420)
T PRK09528 98 FAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN--INPQINF 173 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh--cCchHhH
Confidence 1111 1112223333333333222333333222 2 2446788889999999999999999998864 5899999
Q ss_pred HHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHH
Q 009108 265 GLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV 343 (543)
Q Consensus 265 ~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (543)
++.+++.++..+..++. +|+++....+++ ++ + ++++......++.+|++.++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~----------------------~~~~~~~~~~~~~l~~~~~~~l 228 (420)
T PRK09528 174 WLGSGSALILLVLLFFAKPDAPSTAKVANA-LG--A----------------------NASAVSLKDALALLKLPKFWFL 228 (420)
T ss_pred HHHHHHHHHHHHHHhcccccccchhhhccc-hh--c----------------------ccccccHHHHHHHccCCCeEee
Confidence 99888877666555554 333221100000 00 0 0000111223456667665544
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 009108 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLL 421 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 421 (543)
.+................+.|......+.+.+.. ........++.+++.++.|++.||+++|+.+..+..+..++.++
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l 308 (420)
T PRK09528 229 VLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIG 308 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 4333222222111122233344333333333332 23455566777899999999999999999988888777776666
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHH-HHHHHHHHHHHHHHhhHHHHHhh
Q 009108 422 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL-SLGMHWISNFVIGLYFLSVVNKF 500 (543)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~~~~~~ 500 (543)
+.+. .+.+.......+.+.+... ..+....++.+.+|++.+++..+. .++...+|.+++|.+.|.+.|..
T Consensus 309 ~~~~--------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~ 379 (420)
T PRK09528 309 SGFA--------TGPLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI 379 (420)
T ss_pred HHhc--------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5542 1122222223333333222 122333467888899988888765 67778899999999999999999
Q ss_pred ccccchhhhhHHHHHHHHhhheeccc
Q 009108 501 GISTVYLGFATVCLLAVLYIAVNVVE 526 (543)
Q Consensus 501 g~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
||+..|.+.+++.++..++.++..++
T Consensus 380 G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 380 GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999998888877776655554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=235.04 Aligned_cols=344 Identities=21% Similarity=0.202 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHH
Q 009108 109 ACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (543)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 187 (543)
.++..+........+.+..|. +++++|++..+. +++.+++.+++.++++++|+++||+|||+.++++.++.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 344555556667778889995 999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhh-hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC---------CC
Q 009108 188 CATAQ-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NP 257 (543)
Q Consensus 188 ~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---------~~ 257 (543)
+++++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++.....++|..+++.+++.+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 84 AGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred HHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999 99999999999999965 456678899999999999999999997777777777666654432 12
Q ss_pred CchHHHHH-HhHHHHHHHH-HHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhh
Q 009108 258 LWWRTMFG-LAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335 (543)
Q Consensus 258 ~~wr~~f~-~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (543)
.+||+.|+ ..+++..+.. +...+.+|+|+.. +++++... +. ... ..+++.....++.+
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~---~~~------------~~~~~~~~~~~~~~ 222 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGK---PATGKLSF--KG---ARW------------SVGTGALGDQLKVF 222 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCCccc---ccchhccc--cc---ccc------------cccchhHHHHHHHH
Confidence 48999994 4454444433 3334456655311 00000000 00 000 00000111345566
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHH
Q 009108 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSF 412 (543)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 412 (543)
+++..+...+........ ......+.+.+++ ..+.+.... ......+..++++++.|++.||+++|+....+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~ 298 (366)
T TIGR00886 223 RDRHTWILALLYSVTFGS----FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSF 298 (366)
T ss_pred hccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHH
Confidence 666666554443333332 3334445555554 356665533 455567788899999999999999988777776
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHH
Q 009108 413 TGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS 485 (543)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 485 (543)
.....+..++.+.... +.+.........+...+.+.+. ...+.++.+..| +.+|+++|+.+..+++|
T Consensus 299 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 299 LGVAMGAFLVVLGLVS----PLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 6665555555432110 0011222222333333333322 344456778877 57999999999888765
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=231.13 Aligned_cols=368 Identities=20% Similarity=0.130 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-----cccc-hhhhhhHHHHHH
Q 009108 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTR-TFQLDAVPLAAG 184 (543)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~ 184 (543)
...+..+...+.....+|.+.++.|++.+++ |++..+... .+..+++|+++||+ |||| +++++.++.+++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 3456667777788889999999999999999 999777765 58999999999999 8875 788888888888
Q ss_pred HHHHHHh---hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchH
Q 009108 185 AFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (543)
Q Consensus 185 ~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr 261 (543)
..+.++. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+...|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 8887877 4578888888888888888889999999999999999999999999999999999998888876435999
Q ss_pred HHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
..|++.++..++..+..++.||+++. ++++++..+. .+.+++++++++.++
T Consensus 162 ~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~ 212 (402)
T PRK11902 162 NTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGEA--------------------------VVGPLRDFFSRRGAW 212 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccc---ccccchhHHH--------------------------HHHHHHHHHhCcCHH
Confidence 99999888777665555556765431 1111000000 112345677788777
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhHHHH--HHH-HHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASA--LVG-AANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS 418 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 418 (543)
...+...+......... ....+.+.++.|.+....... ..+ ++.+++.++++++.||+++|+.+..+..+..+.
T Consensus 213 ~~l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 213 ALLLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66555444333221111 222334445577776655222 333 457889999999999999998877666655555
Q ss_pred HHHHHHHHhhcccccccchhHHHHHHH---HHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009108 419 MLLLSLSFTWKVLAPYSGTLAVLGTVL---YVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLS 495 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 495 (543)
.+.+...... +.+.+.......+ ...............++.+.+|.+. .++.+....++..+++.+.|.
T Consensus 290 ~l~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~ 361 (402)
T PRK11902 290 NLGYWVLAVT----PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGY 361 (402)
T ss_pred HHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4333221110 0111222222211 1111111223344446667777554 455566667788777789999
Q ss_pred HHHhhccccchhhhhHHHHHHHHhhhe
Q 009108 496 VVNKFGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 496 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
+.|..|++..|.+.+++++++.++.+.
T Consensus 362 l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 362 LVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888777665543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=228.97 Aligned_cols=354 Identities=14% Similarity=0.065 Sum_probs=243.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhccc----chhhhhhHHHHHHHHHH
Q 009108 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT----RTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~ 188 (543)
.+......+.+.|.+|.+.+|+|.+..+. |++.+++.++..++++++|+++||+||| +.+.++..+. ....+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 44455566788889999999999999999 9999999999999999999999999994 3332222221 22333
Q ss_pred HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhH
Q 009108 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (543)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~ 268 (543)
..++++|.+++.|++.|++.+...+...+++.++ .++|+++++......++|..+||++++++.+. .|||..|++.+
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-~g~~~~f~~~~ 165 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-FGEQAILWILT 165 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHHH
Confidence 4468899999999999999988888888887776 35588889999999999999999999999866 79999998887
Q ss_pred HHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHH
Q 009108 269 IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAA 348 (543)
Q Consensus 269 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 348 (543)
+..++..+..++.||.++ ++++++ +.++...++++++|++.++...+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMP----QGESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred HHHHHHHHHHHccCCCCC----cccccc--------------------------ccccccchHHHHHcChhHHHHHHHHH
Confidence 655544444444454321 000000 00011235678888888777665544
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHH
Q 009108 349 LFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSF 426 (543)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 426 (543)
+.... ......+.+.+.++.|.+.... ......++.++..++.+++.||+++|+.+..+....+++.+++...
T Consensus 216 l~~~~----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~- 290 (382)
T PRK11128 216 LLQGS----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST- 290 (382)
T ss_pred HHHHH----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence 44333 2223334444556677765533 4445567778888999999999999999888887777766555432
Q ss_pred hhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHH-HHHHHHHHHHHHhhHHHHHhhccccc
Q 009108 427 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL-GMHWISNFVIGLYFLSVVNKFGISTV 505 (543)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~~~~~~g~~~~ 505 (543)
.+.+..++..++.+.+++.. .+....+..+. +++.+++..++.+ ....+|..++|.+.|.+.|..|+ ..
T Consensus 291 -------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~ 360 (382)
T PRK11128 291 -------TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GV 360 (382)
T ss_pred -------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence 12233444445555544432 33333456665 5556788899887 44566778999999999999986 45
Q ss_pred hhhhhHHHHHHHH
Q 009108 506 YLGFATVCLLAVL 518 (543)
Q Consensus 506 ~~~~~~~~~~~~~ 518 (543)
++..+++.+++.+
T Consensus 361 ~~~~~~~~~~~~~ 373 (382)
T PRK11128 361 FWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 6655655554433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=225.67 Aligned_cols=370 Identities=15% Similarity=0.095 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH--
Q 009108 112 GAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC-- 188 (543)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~-- 188 (543)
..+........+.|.+|. +.+++|.+..+. |++.+++.+++.++++++|+++||+|||+.++.+++..+++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 87 (396)
T TIGR00882 10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFI 87 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666654 566799999998 999999999999999999999999999999988877766544332
Q ss_pred -HHh-----hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 189 -ATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 189 -~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
.+. +.+..+++.|++.|++.+...+....+..+.. +++++.++......++|..++|.+++.+.+ .+||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--~~~~~ 163 (396)
T TIGR00882 88 YVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS--IDPQI 163 (396)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc--cCchH
Confidence 112 23344567788899988888888777776643 234567788888889999999999998764 68999
Q ss_pred HHHHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 263 MFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
.|++.+++.++..+..+.. ||+|+.. +.++.. +.+.++.+..+.++++|++.++
T Consensus 164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~ 218 (396)
T TIGR00882 164 VFWLGSGFALILMLLLMFAKPKAPSSA----TVANAL---------------------GANASAFSLKLALELFRQRKFW 218 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhh----hhhccc---------------------ccccCCCCHHHHHHHHcCCcHH
Confidence 9999988887766554443 4433210 000000 0000111223456778887766
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 419 (543)
...+..................|...+..+.+.+.. ........+..+++.+..+++.||+++|+.+.++..+.++..
T Consensus 219 ~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~ 298 (396)
T TIGR00882 219 MFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRI 298 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 554433332222111112233333333322222222 234455567778888999999999999999888877777766
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHH-HHHHHHHHHHHHHHhhHHHHH
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL-SLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~~~~ 498 (543)
.+.... .+.+......++.+.+.... ......+..+..|++.++++.+. .+....+|+++++.+.|.+.|
T Consensus 299 ~~~~~~--------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 299 IGSSFA--------TTALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred HHHHhc--------CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 554332 12233333333333332211 11222355666777777777766 678899999999999999999
Q ss_pred hhccccchhhhhHHHHHHHHhhh
Q 009108 499 KFGISTVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 499 ~~g~~~~~~~~~~~~~~~~~~~~ 521 (543)
..|+...|.+.+++.++..++..
T Consensus 370 ~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 370 SIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred hcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877766543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=254.68 Aligned_cols=341 Identities=18% Similarity=0.036 Sum_probs=233.4
Q ss_pred HhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH---HHhhhHHHHH
Q 009108 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATAQSVQTMI 198 (543)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~l~ 198 (543)
....+.+.+..+++.+......+++.+++.+++.++++++|+++||+|||++++++.++..++.+++ ..+++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (1146)
T PRK08633 28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF 107 (1146)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3344666777788877666556999999999999999999999999999999999887766655543 4457899999
Q ss_pred HHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC--------CCchHHHHHHhHHH
Q 009108 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--------PLWWRTMFGLAAIP 270 (543)
Q Consensus 199 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~--------~~~wr~~f~~~~~~ 270 (543)
++|+++|++.+...++..+++.|++++++|++++++...+..+|.++|+++++++... ..+|++.+.+.++.
T Consensus 108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1146)
T PRK08633 108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA 187 (1146)
T ss_pred HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988643 23455555444443
Q ss_pred HH-HHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHH
Q 009108 271 SI-LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (543)
Q Consensus 271 ~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (543)
.. +.++..+++||.++....+.+... ..... .....++.+++++.++..++...+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~~~~ 243 (1146)
T PRK08633 188 VAVLGLIFAYRLPKVPAAAPEVFDKKK-YLFPK-----------------------LLWRNLKLLRSDRVLWLAIIGLSY 243 (1146)
T ss_pred HHHHHHHHHhcCcCCCCCCcccccccc-cccHH-----------------------HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33 333444556776542111100000 00000 001124456667766665554444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHH
Q 009108 350 FLFQQLAGINAVVYYSTSVFRSVGIESD---VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSF 426 (543)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 426 (543)
..+.. .....++..++.+..+.+.. ........++.+++.++.+++.||+++++.+.++.++.+++.+++.+..
T Consensus 244 ~~~~~---~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 244 FWFIS---QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHHHH---HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence 33322 12222333333344666655 3356667788899999999999999998888777776666665555431
Q ss_pred hhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 427 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
+.+..++..++++.+.+.. .+...+++.+..|++.||+++|+.+++.++|.++++.+.+.+..
T Consensus 321 --------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 321 --------SLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred --------hHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233334444444444332 33445578899999999999999999999999888766665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=227.52 Aligned_cols=387 Identities=14% Similarity=0.057 Sum_probs=237.3
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh-hcccchhhhhhHHHHHHHHHHHHhhhHHH-HHHHH
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQT-MIIGR 201 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~r 201 (543)
..+..++.+++|.+.++. +++.+.|.....+..+++|+++|| +||||+++++.+++++++++++++.+... ++++|
T Consensus 35 ~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~ 112 (489)
T PRK10207 35 GILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL 112 (489)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 346678888999998888 999999998888889999999999 99999999999999999999999876554 55899
Q ss_pred HHHhhhccccccchhhhhhccCCccc--chhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
+++|+|.|...+...+++.|++|+++ |++++++++.+.++|..+||.+++++.+. .|||+.|++.++..++..+...
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~-~gw~~~F~i~~i~~~~~~~~~~ 191 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK-FGYSVTYNLCGAGLIIALLVYF 191 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998774 57899999999999999999999999876 7999999987554333333333
Q ss_pred ccCCChhHHH--hcCChHHHHHHHH-------------HHhCchhhHHHHH--------HHHHhccCCCCcccchhhhhc
Q 009108 280 LSPESPRWLF--QQGKKSEAEKSIQ-------------TLYGKERVSEVML--------DLTNAGQGSAEPEAGWFDLFS 336 (543)
Q Consensus 280 ~~~e~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~ 336 (543)
+.++..+... .++++.+...... ............. ..-..++.+. .+++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~------~~~~r 265 (489)
T PRK10207 192 ACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL------DKTGR 265 (489)
T ss_pred HcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC------CHHHH
Confidence 3222111000 0010011000000 0000000000000 0000000000 13445
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-c-----CCCch-hHHHHHHHHHHHHHHHHHHHhhhccCChh---
Q 009108 337 SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-V-----GIESD-VAASALVGAANVFGTAVASSLMDRQGRKN--- 406 (543)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--- 406 (543)
++.+....+. +.....+..+.......+.+.++ . |+... .....+..+..++..++.+++.||+++|+
T Consensus 266 ~r~~~~~~l~--~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~ 343 (489)
T PRK10207 266 NKMFVAFVLM--LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDL 343 (489)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 4444332221 11111112223332333333331 1 22211 22333344556677778899999999886
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHh-hc-ccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHH
Q 009108 407 ----LLTFSFTGMAASMLLLSLSFT-WK-VLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLG 480 (543)
Q Consensus 407 ----~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 480 (543)
.+.+++++.+++++.+..... .. .....+.++.+...++.+.+.. ...+....++.+..|++.+|.++|+.+.
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~-~~~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGEL-FISALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 366677777766654432111 11 1111223334444444444443 3455556678888999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHH----------hhccccchhhhhHHHHHHHHhhhe
Q 009108 481 MHWISNFVIGLYFLSVVN----------KFGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 481 ~~~~g~~~~~~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
..++|+.++..+...... ...+.+.|...++..+++.++.+.
T Consensus 423 ~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 423 TQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877765421 112445666666666655555444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=208.16 Aligned_cols=362 Identities=19% Similarity=0.173 Sum_probs=274.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH
Q 009108 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 185 (543)
+.+++...++.++......+++|.+++.|+++..+. +++..+++.+|.+++++.|++.+|+|+|+-++.|+.++++++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344455667778888888999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHH---HhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC------
Q 009108 186 FLCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN------ 256 (543)
Q Consensus 186 ~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~------ 256 (543)
.+.. ...+|..++++-++.|.|.+...+.++.+++...++++..+.+++.+...++|.+++|++++.+...
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 9884 5678999999999999999999999999999999998889999999999999999999999887651
Q ss_pred ------------CCchHHHHHHhHHHHHHHHHHhccc--CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhcc
Q 009108 257 ------------PLWWRTMFGLAAIPSILLALGMGLS--PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQ 322 (543)
Q Consensus 257 ------------~~~wr~~f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (543)
...|+++|...+...+++.+..... |+.+....+
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~-------------------------------- 220 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPS-------------------------------- 220 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccc--------------------------------
Confidence 1238888888877776666554442 333220000
Q ss_pred CCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhh
Q 009108 323 GSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLM 399 (543)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~ 399 (543)
..+.++....++++++.++...++.+++...+..... |.+.+..+ .|.+.... ......++.++|++++.++.
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gs----fl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm 296 (422)
T COG0738 221 LGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGS----FLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALM 296 (422)
T ss_pred ccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHH----HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011112457888899999888888887776554444 44444444 56555544 66777889999999999999
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHH
Q 009108 400 DRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL 479 (543)
Q Consensus 400 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 479 (543)
.|+...|.+.+..+...+.++...+. +..+.+....+.+.+.+ ...|..++...+..| + .....|...
T Consensus 297 ~~~~~~k~Laf~a~~~ill~~~~~l~---------~g~v~~~~l~~ig~F~s-imfPTIfslal~~l~-~-~ts~~s~~l 364 (422)
T COG0738 297 SRIKPEKYLAFYALIAILLLLAVALI---------GGVVALYALFLIGLFNS-IMFPTIFSLALKNLG-E-HTSVGSGLL 364 (422)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHh---------cChHHHHHHHHHHHHhH-HHHHHHHHHHHhccC-c-cccccceee
Confidence 99999998887776655555555543 22344444444444443 466777778888888 3 334444555
Q ss_pred HHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHH
Q 009108 480 GMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAV 517 (543)
Q Consensus 480 ~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 517 (543)
...-+|+++.|++.|++.|..|....+.....+|.+.+
T Consensus 365 ~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 365 VMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 66778999999999999999997777665555555544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=255.35 Aligned_cols=377 Identities=15% Similarity=0.038 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhh---hhHHH
Q 009108 106 VGVACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL---DAVPL 181 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~ 181 (543)
+...+++.+.+++....+..... .+..+.+.+... ..++..+++.+.+.++++++|+++||+|||+++.. +.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~ 95 (1140)
T PRK06814 17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNA-LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI 95 (1140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence 33344555555554443333333 333333333222 23888999999999999999999999999997533 22333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchH
Q 009108 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (543)
Q Consensus 182 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr 261 (543)
.+..+.+...+++++++++|+++|++.+...|+..+++.+++++++|++++++.+++.++|.++||++++++... .+|+
T Consensus 96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-~~~~ 174 (1140)
T PRK06814 96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-GNFV 174 (1140)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 333333444589999999999999999999999999999999999999999999999999999999999999866 7999
Q ss_pred HHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
+.|+..++..++.+++.+++|+++.. .++.... ....+. ....++.+.+++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-----------------------~~~~~~~~~~~~~~~ 228 (1140)
T PRK06814 175 ILVALLMGIAVLGWLASLFIPKTGNA--APDLKID-RNIIRS-----------------------TITLLKYAKADKRIW 228 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeec-cchHHH-----------------------HHHHHHHHhcCchHH
Confidence 99955555555555556666665431 0000000 000000 011244566677777
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS 418 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 418 (543)
...+...+..+. ...+..+.|.+.++ ++.+.. .......+++.+++.++.|++.|+..+++.+..+.++.+++
T Consensus 229 ~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 229 LAILGISWFWLV----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLF 304 (1140)
T ss_pred HHHHHHHHHHHH----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHH
Confidence 666655544433 22333344554443 566554 33667778899999999999998887766665555555444
Q ss_pred HHHHHHHHhhc------------ccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHH
Q 009108 419 MLLLSLSFTWK------------VLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN 486 (543)
Q Consensus 419 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 486 (543)
.+.+.+..... .....+.+...+..++++.+.+.. .+...+++.+..|++.+|+++|+.+++.+++.
T Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~ 383 (1140)
T PRK06814 305 GLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFM 383 (1140)
T ss_pred HHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHH
Confidence 44333210000 000012233344444444444433 33455688899999999999999999999999
Q ss_pred HHHHHhhHHHHHh-hccccchhhhhHHHHH
Q 009108 487 FVIGLYFLSVVNK-FGISTVYLGFATVCLL 515 (543)
Q Consensus 487 ~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~ 515 (543)
.+++.+.|.+.+. .++...+.+.+++.++
T Consensus 384 ~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 384 VAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999998753 3455555544443333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=200.77 Aligned_cols=368 Identities=19% Similarity=0.199 Sum_probs=279.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
+..+..+.+..+.-.-..+.++|+++.+++|+|+|.+.. |+++++..+.+.+.+++..++..|+|.++.+..++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 444555566667777788889999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++.++-... +.+.++.+-.+.|.|.+...+..+.++-+.||++ -+..+|++....++|..+++.+...+.++..+||.
T Consensus 89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 999998887 7888899999999999999999999999999876 79999999999999999999999988877568999
Q ss_pred HHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHH
Q 009108 263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (543)
...+-++++++.++.++. ... +.+.. ..+.+..+-..++|++.-|.
T Consensus 167 aL~~WAl~allAl~~WlP--q~~-------r~~~~-------------------------~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 167 ALGFWALLALLALLIWLP--QAL-------REQAA-------------------------SIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHHHhh--hcc-------ccccc-------------------------ccccccccccccccCchhHH
Confidence 999998888876665432 111 11000 00112223345778887776
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccC-ChhHHHHHHHHHHHHH
Q 009108 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQG-RKNLLTFSFTGMAASM 419 (543)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~ 419 (543)
+.+.+.+.. ..++.+..|+|.++.+.|++.... ......+..++..+....+.+|.. +|+.......++.++.
T Consensus 213 vtLfmGlqS----~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLFMGLQS----LLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHHHHhhH----HHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 655544444 447888888999999999988755 667778899999999999999754 5566666667777777
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccc-cccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALL-LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
+.+.+... ...+++ .++++.+.+.. .++.... ....-.++..+.-.|+.+.++++-+.+||.++|.+.|
T Consensus 289 ~G~~~~P~------~~~~lw---~~llG~G~G~~-F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 289 VGLLLAPG------QLPILW---ALLLGLGQGGA-FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHHHhhh------hHHHHH---HHHHhCccchH-HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 77765311 111222 34444443332 3333333 3344556778899999999999999999999999999
Q ss_pred hhc-cccchhhhhHHHHHHHHhhhe
Q 009108 499 KFG-ISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 499 ~~g-~~~~~~~~~~~~~~~~~~~~~ 522 (543)
..| |...+..++.+.++..+.-+.
T Consensus 359 a~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 359 ATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhh
Confidence 887 656666666655555554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=220.40 Aligned_cols=341 Identities=14% Similarity=0.045 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhc
Q 009108 142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (543)
Q Consensus 142 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 221 (543)
+.|++.+++.+.+.+.+++.|.+.||+|+|..+++|+.++...++++++.++++.++++|.+||+|.++..+...++++|
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd 186 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLAD 186 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHH
Q 009108 222 ISPTE-IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKS 300 (543)
Q Consensus 222 ~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 300 (543)
.||++ +|++++|+...+.++|.++||.+||.+.+. .|.+.+|++.++++++-..+.+++-|+.+. ++
T Consensus 187 ~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~---~~-------- 254 (464)
T KOG3764|consen 187 VFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFLVLAIVLLLDGALQLLVIEPTEM---DP-------- 254 (464)
T ss_pred HcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHHHHHHHHHHHHHHHHheeCcccc---Cc--------
Confidence 99965 479999999999999999999999999977 899999999999998877766665333220 00
Q ss_pred HHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCc--hh
Q 009108 301 IQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES--DV 378 (543)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 378 (543)
+..++..+++++++++..+........... .....-+.+.....+....+. .+
T Consensus 255 ----------------------~~~~~~~~~~~Ll~dP~I~~~agai~~~n~---~lafLePtlslwm~e~m~~p~w~~G 309 (464)
T KOG3764|consen 255 ----------------------DSTEQGTPMWSLLMDPYILLIAGAITFSNS---SLAFLEPTLSLWMLETMFTPGWEVG 309 (464)
T ss_pred ----------------------cccccCccHHHHHhCchHhhhhcchhhccc---hHHHhCcccHHHHHHhccCCCccee
Confidence 011234456777888776654443332222 112222233333344444222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCccccc
Q 009108 379 AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVP 458 (543)
Q Consensus 379 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (543)
..+....+...++..+.|.+.||++.-+.+.....+..++............ ...+....+..+.+........|..
T Consensus 310 ~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~---~~L~vp~~~l~~~i~~~dasl~P~l 386 (464)
T KOG3764|consen 310 LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI---AQLWVPNFGLGFGIGLADASLIPTL 386 (464)
T ss_pred eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH---HHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 3566677888999999999999999544444433333334333322211100 0111112222222222222233444
Q ss_pred ccccccccChh---hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhhee
Q 009108 459 ALLLPEIFASR---IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVN 523 (543)
Q Consensus 459 ~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 523 (543)
. +..|....+ ..|...++......+|.++||.+.|.+++..|+++...+.++..++-.-+..++
T Consensus 387 ~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 387 G-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred H-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344443334 678999999999999999999999999999999999888888887766555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-25 Score=219.38 Aligned_cols=405 Identities=16% Similarity=0.104 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHH-HHH--cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh-hcccchhhhhhHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYL-AKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGA 185 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~ 185 (543)
++..+...+......+.+|.+ .++ +|++..+. +++.+.+.+++.++++++|+++|| +|||++++++.++.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~ 93 (475)
T TIGR00924 16 FFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 344555555555555556654 555 89998888 999999999999999999999999 899999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCccc---chhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
++.+++++++.++++|++.|++.|...+...++++|++++++ |++++++++.+.++|.++||.+++++.+. .+|++
T Consensus 94 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-~g~~~ 172 (475)
T TIGR00924 94 FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-YGYHV 172 (475)
T ss_pred HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh-cChHH
Confidence 999999999999999999999999999999999999998764 88899999999999999999999998765 78999
Q ss_pred HHHHhHHHHHHHHHHhcccC----CChhHHHhcCChHHHHHHHHHH----------------hCchhhHHHHH-------
Q 009108 263 MFGLAAIPSILLALGMGLSP----ESPRWLFQQGKKSEAEKSIQTL----------------YGKERVSEVML------- 315 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~------- 315 (543)
.|++.++..++..+..++.+ +.|+. .++.+++..+..... ...........
T Consensus 173 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (475)
T TIGR00924 173 GFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAV 250 (475)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99988765554433333322 21110 000000000000000 00000000000
Q ss_pred HHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCC--c----hhHHHHHHHHHH
Q 009108 316 DLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIE--S----DVAASALVGAAN 388 (543)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~----~~~~~~~~~~~~ 388 (543)
....... ..+++.+..+..|......+++...+++. .+.......+.+.++ .+.+ . ......+..+..
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~i 325 (475)
T TIGR00924 251 IIFFFRL-AFKPRLDAVARNKMYAYIVLFLEAVVFWV----LYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWV 325 (475)
T ss_pred HHHHHHH-HHhccCCHHHHhHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHH
Confidence 0000000 00000011111111112222222222222 233333333333222 2211 1 223444455555
Q ss_pred HHHHHHHH----Hhhhc-cCChhHH--HHHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHHHHhhcCccccccc
Q 009108 389 VFGTAVAS----SLMDR-QGRKNLL--TFSFTGMAASMLLLSLSFTWKVL-APYSGTLAVLGTVLYVLSFSLGAGPVPAL 460 (543)
Q Consensus 389 ~~~~~~~g----~l~d~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (543)
++..++.. ++.+| .+.+... .++.++.+++++.+.+....... .+.+.++.+...++.+.+. ....|....
T Consensus 326 il~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge-~~~~p~~~~ 404 (475)
T TIGR00924 326 VVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGE-LMISPLGLS 404 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH-HHHhHHHHH
Confidence 55554433 44444 2223333 56777777777666543211111 1223444444445554444 345677777
Q ss_pred ccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecc
Q 009108 461 LLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 461 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
++.+..|++.||+++|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus 405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999888777777777777777777766665554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=226.96 Aligned_cols=335 Identities=15% Similarity=0.131 Sum_probs=226.8
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh----hcccc-hhhhhhHHHHHHHHHHHHhhh------H
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTR-TFQLDAVPLAAGAFLCATAQS------V 194 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~ 194 (543)
..+++.+++|++..+. |++.++..+..++..|+.|+++|| +|||| .++.+...++++.+++.+.++ +
T Consensus 22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 6677888999999998 999999999999999999999997 67754 667788888888888877654 4
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhccC-CcccchhhhHHHHHHHHHHHHHHHHhhcccC------CCCCchHHHHHHh
Q 009108 195 QTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFGLA 267 (543)
Q Consensus 195 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~------~~~~~wr~~f~~~ 267 (543)
+.+++.+++.+++.+...++..++..|.. +++||++..++...+..+|..+++.+.+.+. +...+||+.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 56777888899998887778888888887 4688999999988888888766555443332 1236899999999
Q ss_pred HHHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHH
Q 009108 268 AIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (543)
Q Consensus 268 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 346 (543)
+++.++..+. .++.+|.++. .++.++ ++.+.+..++++++++.++...+.
T Consensus 180 ~~l~~~~~~~~~~~~~e~~~~---~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERYSE---IPKNIE--------------------------KKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHHHHcCCEecCCC---CCcccc--------------------------cCCCHHHHHHHHhCCHHHHHHHHH
Confidence 9888776554 3445665421 000000 000011234566777777665554
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH-cCCCch-hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHH
Q 009108 347 AALFLFQQLAGINAVVYYSTSVFRS-VGIESD-VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL 424 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 424 (543)
..+..... .....+.+++.+. .+.... ........++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+
T Consensus 231 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 306 (437)
T TIGR00792 231 YLFYNLAF----NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF 306 (437)
T ss_pred HHHHHHHH----HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 44443332 2222222332221 221111 22445557888899999999999999999998888777776665543
Q ss_pred HHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009108 425 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVV 497 (543)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 497 (543)
.. .+.+...+..++.+.+.+. ..+..++++.|..+ ++.+|.+.|+.+....+|..+++.+.|.+.
T Consensus 307 ~~-------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 307 AG-------SNLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred cc-------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1122223333333333332 23445556666654 556899999999999999999999999999
Q ss_pred Hhhccc
Q 009108 498 NKFGIS 503 (543)
Q Consensus 498 ~~~g~~ 503 (543)
+..||.
T Consensus 379 ~~~G~~ 384 (437)
T TIGR00792 379 GIIGYV 384 (437)
T ss_pred HHcCCC
Confidence 988864
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=206.73 Aligned_cols=350 Identities=16% Similarity=0.114 Sum_probs=214.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhh
Q 009108 141 VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYIS 220 (543)
Q Consensus 141 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 220 (543)
...|.+.+.|.+++.+.++.+|.++||+|||+++++|++..++...+.+++.|+..++++|++.|+..| ...++.++++
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiis 146 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIIS 146 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHH
Confidence 356999999999999999999999999999999999999999999999999999777777999999988 6678899999
Q ss_pred ccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC--CCc-hHHH--HHHhHHHHHH-HHHHhcccCCChhHHHhcCCh
Q 009108 221 EISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--PLW-WRTM--FGLAAIPSIL-LALGMGLSPESPRWLFQQGKK 294 (543)
Q Consensus 221 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~--~~~-wr~~--f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~ 294 (543)
|.+++++|+++++..+..+++|.++||.+|+++... ..| +... -++..+++.. .....+++||+-+....+++.
T Consensus 147 dV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~ 226 (451)
T KOG2615|consen 147 DVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEH 226 (451)
T ss_pred hhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccc
Confidence 999999999999999999999999999999998761 011 1111 1222223322 344566778884321111000
Q ss_pred HHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHH---HHHHHHHHHHHHhhhhHHHHHHHHHH-HH
Q 009108 295 SEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV---VSVGAALFLFQQLAGINAVVYYSTSV-FR 370 (543)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (543)
.+..+..+......+.+ +..-....+++.... ..-.+.+..+.+...+....++...+ .+
T Consensus 227 ~~~~~~~~~~~~~~~~~----------------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~ 290 (451)
T KOG2615|consen 227 STLQEAADDRLALLKFA----------------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHG 290 (451)
T ss_pred cchhhhhhhhhhhcchh----------------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Confidence 11111100000000000 000011122221111 11112222333333344555555544 24
Q ss_pred HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccC--ChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHH
Q 009108 371 SVGIESDVA--ASALVGAANVFGTAVASSLMDRQG--RKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLY 446 (543)
Q Consensus 371 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (543)
.+|+++.+. .....++.+.+..+...+..+|.. -+..+.....++.-..+++... ........+..+.
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--------~~~~~l~~~s~l~ 362 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--------RTPVVLYLGSTLK 362 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--------ccchhhhHHHHHH
Confidence 577777655 445555666665555555566654 3333333333333333333221 1112222223333
Q ss_pred HHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh-ccccchhhhhHHHHHH
Q 009108 447 VLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF-GISTVYLGFATVCLLA 516 (543)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~ 516 (543)
.+.. ....+..+.++....|++.||+++|+..+.+.++.++||.+.|.+.... +-+..+...+.+.+++
T Consensus 363 sf~~-A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 363 SFST-ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HHHH-HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 3222 2234455557888999999999999999999999999999998876532 3444555555555555
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=218.73 Aligned_cols=368 Identities=20% Similarity=0.167 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 189 (543)
+++.++..+...+.....+.+..++.-|+... +++.++..+...+.++++|.++||++||++++.+-++.++..++.+
T Consensus 16 w~a~~iS~lG~~~~~va~~wlv~~lt~S~~~v--alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~ 93 (524)
T PF05977_consen 16 WIAQLISNLGDWMQTVALAWLVTQLTGSPLMV--ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLA 93 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence 34445555555566667777777776666666 9999999999999999999999999999999999988876655544
Q ss_pred Hh-----hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHH
Q 009108 190 TA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (543)
Q Consensus 190 ~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f 264 (543)
+. .+.+.+++.-++.|++.+...|+..+++.|..|+++...++++.+...++..++||.++|.+... .|-.+.|
T Consensus 94 ~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~-~G~~~~f 172 (524)
T PF05977_consen 94 VLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF-FGAAAAF 172 (524)
T ss_pred HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHH
Confidence 32 47888999999999999999999999999999999999999999999999999999999998754 6778888
Q ss_pred HHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHH
Q 009108 265 GLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS 344 (543)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 344 (543)
.+.++..++.++.+..++.+++ +++.++ ++..+. -+..++-+.+++..+..+
T Consensus 173 ~inalsfl~~i~~l~~~~~~~~---~~~~~~--e~~~~~-----------------------l~~G~ryv~~~~~l~~~l 224 (524)
T PF05977_consen 173 LINALSFLISILALLRWKPPPP---PSSLPR--ERFFSA-----------------------LREGLRYVRSSPPLRSVL 224 (524)
T ss_pred HHHHHHHHHHHHHHHHcccccc---ccccch--hhhhhh-----------------------HHHHHHHHhcchHHHHHH
Confidence 8887766554444433332211 011000 010010 011223334455555444
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 009108 345 VGAALFLFQQLAGINAVVYYSTSVFR-SVGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLL 421 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 421 (543)
+...++.+. ...+...+|.+.+ .++.++. +......+++.++|.++.+++.+|+++++.+..+.++.+++++.
T Consensus 225 ~~~~~~~l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~ 300 (524)
T PF05977_consen 225 LRSFLFNLF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL 300 (524)
T ss_pred HHHHHHHHh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH
Confidence 333333222 1222233455443 3555555 34677789999999999999999999988888888777777766
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009108 422 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 501 (543)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g 501 (543)
+++.. +.+...+..++.+.+... ......+.+++..|++.||++++++.++...+..+|..+.|.+.+..|
T Consensus 301 lal~~--------~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 301 LALSP--------SFWLALIALFLAGAAWII-ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred Hhcch--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66531 223333333343433332 333445578899999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHHHhhh
Q 009108 502 ISTVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~ 521 (543)
....+.+.+++.+++.++.+
T Consensus 372 ~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 372 VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888777766666555444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=227.01 Aligned_cols=302 Identities=15% Similarity=0.119 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH
Q 009108 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 186 (543)
..+++..+......+..+..++.+.++|+++..+. |++.+.+.++++++.++.|++.||+|||+++.+++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 44455666667778888999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhh---------------------------------------------------hHHHHHHHHHHHhhhccccccch
Q 009108 187 LCATAQ---------------------------------------------------SVQTMIIGRVLAGIGIGISSAIV 215 (543)
Q Consensus 187 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~ 215 (543)
++++.+ .+..++++|+++|+|.+..++..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 988763 25567899999999999999999
Q ss_pred hhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCC---------------------CchHHHHHHhHHHHHHH
Q 009108 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------LWWRTMFGLAAIPSILL 274 (543)
Q Consensus 216 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~ 274 (543)
.+++.|++|+++|+++++++..+..+|..+|+++++++.+.. ..|+..|++.+++.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876321 12778888888888776
Q ss_pred HHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHH
Q 009108 275 ALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 354 (543)
Q Consensus 275 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (543)
.+.++++|++.+....+.+.+..++. ......+... .......++....++.+++++.++...+...+....
T Consensus 274 ~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~- 345 (633)
T TIGR00805 274 SIPFFFFPKALPKEGKRVNVDVHETE--KLEKSEDKSR-----KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA- 345 (633)
T ss_pred HHHHHhCccccCCcccccchhhhhhh--cccccccccc-----hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-
Confidence 66666666543210000000000000 0000000000 000000001123456788888877766655555443
Q ss_pred hhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHH-HHHHHHHHHHHhhhccCC--hhHHHHHHHHHHHHHHH
Q 009108 355 LAGINAVVYYSTSVFRS-VGIESDVA--ASALVGA-ANVFGTAVASSLMDRQGR--KNLLTFSFTGMAASMLL 421 (543)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 421 (543)
+..+..|+|.++++ ++.++... ......+ +.+++.+++|+++||++. |+.+..+.++..++.++
T Consensus 346 ---~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 346 ---FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred ---HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 45555666666654 67776655 3333333 567899999999999884 56666666666655444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=211.99 Aligned_cols=380 Identities=20% Similarity=0.191 Sum_probs=236.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
+..+..+++......+.....+..++.+..|+|-++. . .|+.+.+.++.+++.++.|+++|.||||++++.+.++..
T Consensus 43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~-~--~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 43 IASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDN-W--SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCcc-c--hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 3334444444444555555666788999999998754 4 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
+|+++++.++|...++.+..+.|+|.|... .....++|..|.|.|+...++...........++.++..+..+ .+|||
T Consensus 120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-~~WRw 197 (599)
T PF06609_consen 120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-SGWRW 197 (599)
T ss_pred hHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-CCcch
Confidence 999999999999999999999999987665 4556689999999998877777666555555677777665544 78999
Q ss_pred HHHHhHHHHHHHHHHhcccCCChhHHHhcCCh---HHHHHHHHHHhCc---hhhHHHHHHHH------------------
Q 009108 263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKK---SEAEKSIQTLYGK---ERVSEVMLDLT------------------ 318 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~------------------ 318 (543)
.|++..+...+.++..+++..+|++...++++ .+..+.++.+... ....-....+.
T Consensus 198 ~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~l 277 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPL 277 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH
Confidence 99999888766554433322222222222111 1111111111000 00000000000
Q ss_pred ------------HhccCCCCcccchhhhhccc-hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCc-----hhHH
Q 009108 319 ------------NAGQGSAEPEAGWFDLFSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES-----DVAA 380 (543)
Q Consensus 319 ------------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 380 (543)
.+.....+++.-..+++|++ .+....+..++... ..+....+|......-++.+. ....
T Consensus 278 viG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~---~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~ 354 (599)
T PF06609_consen 278 VIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGM---NFFSVNILWPQQVVNVFGSDPISITEIGWI 354 (599)
T ss_pred HHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCCcccceeehh
Confidence 00001112223344677763 33332222222222 223344455554443344332 2335
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCChh-HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccc
Q 009108 381 SALVGAANVFGTAVASSLMDRQGRKN-LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPA 459 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (543)
....+.+..++.++.|.+..++++-| .++++.+++.+++.+++.. . +.+....+...++.+.+.+.... ...
T Consensus 355 s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-~-----~~n~~~~i~~~~l~g~giG~~~~-~~~ 427 (599)
T PF06609_consen 355 SSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-R-----PDNKNAAIAFLVLAGFGIGGILV-PAI 427 (599)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-c-----CCCcchHHHHHHHHHHhHHHHHH-HHH
Confidence 56677788888889999999888754 4456665655554444432 1 11222223333333333333222 223
Q ss_pred cccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009108 460 LLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV 497 (543)
Q Consensus 460 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 497 (543)
..++-..|++..|++.|+..+++.+|+.+|..+...++
T Consensus 428 ~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 428 VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35566789999999999999999999999998886655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=213.60 Aligned_cols=365 Identities=13% Similarity=0.061 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcch-hhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH
Q 009108 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENT-VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 185 (543)
+++|+..|+.-+ +...+.+.|++.+|+|++.++ . |.+.++++.+|++++++.|+++||+|.|+++.++++.+++.+
T Consensus 30 ~~lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t 106 (511)
T TIGR00806 30 LYLCFYGFMAQF-RPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW 106 (511)
T ss_pred HHHHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 334555555544 556677999999999999999 7 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHH
Q 009108 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (543)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~ 265 (543)
++.++++++..+.+.|++.|++.|..+ +...++..|+|+++|+++.++..++..+|.++++++++++. . .|||+.+.
T Consensus 107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-~gWr~y~~ 183 (511)
T TIGR00806 107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-LGWISYST 183 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCchhHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999998854 3 78987654
Q ss_pred Hh---HHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCc-------ccchhhhh
Q 009108 266 LA---AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP-------EAGWFDLF 335 (543)
Q Consensus 266 ~~---~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~ 335 (543)
+. .....+.+++.+++|..++.+.-+++++.......+......... . +.....+... ...+++..
T Consensus 184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~~~y 259 (511)
T TIGR00806 184 LNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG---G-KLEDYLGTCRDSFLVRMLSELVTIY 259 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc---c-ccchhhhhhhhHHHHHHHHHHHHHh
Confidence 43 333344556677778555533322211100000000000000000 0 0000000000 01122333
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHH
Q 009108 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES---DVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSF 412 (543)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 412 (543)
+++... -..+++.....++..+..|...+.+....+. .+..-.+..+.+.+..+..|++-.++.+-..+.++.
T Consensus 260 ~n~~vl----~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v 335 (511)
T TIGR00806 260 RNPQLL----LWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAV 335 (511)
T ss_pred cCcchh----hhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 343322 2233344445567788888887776654322 233444455666778888898866654433333333
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHh
Q 009108 413 TGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLY 492 (543)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 492 (543)
+...-+.+++.... ..+.+...+..+++...+..... +...-++.....+..|...|+.+++.-+-..+-..+
T Consensus 336 ~s~~~~gll~~m~~------t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 336 VSAIQAGLVFWMSQ------SHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHHhhhhhc------ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 32222222222221 12445556666666666665433 333345555566667888998887766655554433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=213.79 Aligned_cols=324 Identities=15% Similarity=0.098 Sum_probs=217.6
Q ss_pred HHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-----cccch-hhhhhHHHHHHHHHHHHh---
Q 009108 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQLDAVPLAAGAFLCATA--- 191 (543)
Q Consensus 121 ~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~--- 191 (543)
..+++..|.+.+|+|+|.++. |++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 456778999999999999998 988655 455555 89999999998 89886 567777888877777777
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc--------hHHH
Q 009108 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--------WRTM 263 (543)
Q Consensus 192 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~--------wr~~ 263 (543)
.+++.+....++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+... .+ ||..
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-EFANTGLITLWGYI 159 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccHHH
Confidence 56667777888888888888899999999999999999999999999999999999999887755 55 9999
Q ss_pred HHHhHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccch---
Q 009108 264 FGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY--- 339 (543)
Q Consensus 264 f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 339 (543)
|++.++..++..+..++ .+|+.+. ++++++..+. .+..++++++++.
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------------------VLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------------------HHHHHHHHHHhcCchH
Confidence 99998877765555443 4554221 0000000000 0112344555554
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHH-HHHHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 009108 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVG-AANVFGTAVASSLMDRQGRKNLLTFSFTGMA 416 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 416 (543)
.+...+...+... .+.....+.+.+.++.|++.... .....+ ++.+++.++++++.||+|+|+.+..+.++.+
T Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 286 (356)
T TIGR00901 211 ALLLLLLIVLYKL----GDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA 286 (356)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3332222222222 23344455555556677777654 333333 5677899999999999999998888777766
Q ss_pred HHHHHHHHHHhhcc---cccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHH
Q 009108 417 ASMLLLSLSFTWKV---LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHW 483 (543)
Q Consensus 417 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 483 (543)
++..++.+...... ......+......++.+.+.+ ...+...++..|.+|++.||+.+|+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 66554443211000 000011222222222233333 2445566689999999999999999887664
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=211.69 Aligned_cols=405 Identities=13% Similarity=0.085 Sum_probs=259.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
++|..+..........+.. ..++...+.+++++|++..+. +++.++. ..+.+++++.|++.||+|+|+++.++.++
T Consensus 25 ~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3454444444444444433 344567889999999999988 8888774 44567788899999999999999999999
Q ss_pred HHHHHHHHHHh------hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHH-HHHhhccc
Q 009108 181 LAAGAFLCATA------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA-ALVAGLPL 253 (543)
Q Consensus 181 ~~i~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~l 253 (543)
+++++++++++ ++++.+++.|++.|+|.+...+.+...+.+||| ++||++.|+...+.++|..+ +++..+++
T Consensus 101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 689999999999999999998999999999997 56999999999999999864 66666555
Q ss_pred CCCCCchHHHHHHhHHHHHHHHHHhcc-c--CCChhHHHhcCChHHHHHHHHHHhC------------------------
Q 009108 254 AGNPLWWRTMFGLAAIPSILLALGMGL-S--PESPRWLFQQGKKSEAEKSIQTLYG------------------------ 306 (543)
Q Consensus 254 ~~~~~~wr~~f~~~~~~~~~~~~~~~~-~--~e~~~~~~~~~~~~~~~~~~~~~~~------------------------ 306 (543)
. .+|++.|++.+++.++..++.+. + |+.+++..++++.++..+..++..+
T Consensus 180 ~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~ 256 (591)
T PTZ00207 180 S---DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILI 256 (591)
T ss_pred H---HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHH
Confidence 3 46888888888888765544333 3 4444433222211111111000000
Q ss_pred --------------c-hhhH----H-HH---HHHH----------------H-----------------hc--------c
Q 009108 307 --------------K-ERVS----E-VM---LDLT----------------N-----------------AG--------Q 322 (543)
Q Consensus 307 --------------~-~~~~----~-~~---~~~~----------------~-----------------~~--------~ 322 (543)
. .... . .. .-.. + .+ +
T Consensus 257 ~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (591)
T PTZ00207 257 VFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVD 336 (591)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccccccc
Confidence 0 0000 0 00 0000 0 00 0
Q ss_pred -CCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc-CCCc-h--hH-HHHHHHHHHHHHHHHHH
Q 009108 323 -GSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV-GIES-D--VA-ASALVGAANVFGTAVAS 396 (543)
Q Consensus 323 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~-~~~~~~~~~~~~~~~~g 396 (543)
..++...++++.+++..+|.+++..++.... ...+...+.++.+.+ |.+. . .. +..+.++++.+|++..|
T Consensus 337 ~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~----gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g 412 (591)
T PTZ00207 337 YIAPQFQETFIEGLKTARLWCLLWSIFCCVGA----HFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMS 412 (591)
T ss_pred CCCCCCcchHHHHHhchhHHHHHHHHHHhhCc----hheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHH
Confidence 0011112666677777777777665555443 344455566666777 6522 2 22 56788999999999999
Q ss_pred HhhhccCCh--------hHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccCh
Q 009108 397 SLMDRQGRK--------NLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS 468 (543)
Q Consensus 397 ~l~d~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 468 (543)
++.....+| ...+....++.++.+++++.. ......+..++.+.+++.. .++....++|++.
T Consensus 413 ~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~--------p~~~L~~~~~lvg~~~G~~-~~~~~~i~selFg- 482 (591)
T PTZ00207 413 YFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL--------PKAALPLPYFIAAFANGFM-AATIALVTRTIFA- 482 (591)
T ss_pred HHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC--------CccHhHHHHHHHHHHhhHh-HHHHHHHHHHHhc-
Confidence 987322222 222222222455555554431 1123455555555555543 4455558899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHhhHHHHHhh----------c---cccchhhhhHHHHHHHHhhheecccC
Q 009108 469 RIRAKAVALSLGMHWISNFVI-GLYFLSVVNKF----------G---ISTVYLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 469 ~~~~~~~g~~~~~~~~g~~~~-~~~~g~~~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
++-|+-.-+.....-+|..+. ..++|.++|+- | ++.+|++++++++++.++...+..++
T Consensus 483 k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 483 KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 778887777777777777665 56788888753 1 56789999998888877765544333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=205.91 Aligned_cols=370 Identities=13% Similarity=0.045 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHH--HHHHHHHHHHHHHhh-HhhhhhhcccchhhhhhHHH-H
Q 009108 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWI--VSSLLAGATVGSFTG-GSLADKFGRTRTFQLDAVPL-A 182 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~--~s~~~l~~~i~~~~~-g~l~dr~Grr~~~~~~~~~~-~ 182 (543)
..+....+..+...+...+.+|.+.+|.|.+.+++ |.+ .++..+...+.+|++ ++..||+||||..++.+.+. +
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence 34455668888888899999999999999999999 997 466788888888888 44799999999875555332 2
Q ss_pred HHHHHHH-H--hhh-HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009108 183 AGAFLCA-T--AQS-VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (543)
Q Consensus 183 i~~~~~~-~--~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 258 (543)
+.....+ + ..+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~-~ 160 (390)
T TIGR02718 82 ACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK-F 160 (390)
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 2222222 1 222 334445556666677777777778888998888888888889888899999999888887765 7
Q ss_pred chHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccc
Q 009108 259 WWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR 338 (543)
Q Consensus 259 ~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (543)
+||..|++.+++.++..+..++++|+++. +++.++ + +..++++++|++
T Consensus 161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~--~---------------------------~~~~~~~~l~~~ 208 (390)
T TIGR02718 161 GQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL--A---------------------------RRASLFRFFRRP 208 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch--h---------------------------hHHHHHHHHcCc
Confidence 99999999998887766555555433210 000000 0 011245667777
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHH-HHHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 009108 339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVG-AANVFGTAVASSLMDRQGRKNLLTFSFTGM 415 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 415 (543)
..+......++..... .....+.+.+.++.|++.... .....+ ...+++.++.|++.||+|+|+.+..+..+.
T Consensus 209 ~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 209 LAWSLLALALLSAMTA----VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6665555444443322 222334455556678887755 233333 456677899999999999999888776655
Q ss_pred HHHHHHHHHHHhhcccccccchhHHHHHHHH-HHHhhcCcccccccccccccCh-hhhhHHHHHHHHHHHHHHHHHHHhh
Q 009108 416 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLY-VLSFSLGAGPVPALLLPEIFAS-RIRAKAVALSLGMHWISNFVIGLYF 493 (543)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~ 493 (543)
++..+........ . .. ..........++ ....+... +.......+..++ +.+++.+++.+...++|..++|.+.
T Consensus 285 ~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 285 GSLALLWFAQAAF-W-LA-PGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred HHHHHHHHHHHHc-c-cC-CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222211110 0 00 111111111111 11222222 2223344444454 7899999999999999999999999
Q ss_pred HHHHHhhccccchhhhhHHHHHHHHh
Q 009108 494 LSVVNKFGISTVYLGFATVCLLAVLY 519 (543)
Q Consensus 494 g~~~~~~g~~~~~~~~~~~~~~~~~~ 519 (543)
|.+.|..|+...|.+.+++.+++.++
T Consensus 361 G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 361 GYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=210.38 Aligned_cols=384 Identities=15% Similarity=0.101 Sum_probs=224.1
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh-hcccchhhhhhHHHHHHHHHHHHhh-hHHHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVL 203 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l 203 (543)
...++.+++|++..+. +++.+.+........+++|+++|| +|||+.++++.++.+++.+++++++ +.+.++++|++
T Consensus 44 l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l 121 (500)
T PRK09584 44 MAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMAT 121 (500)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5567778999998887 888888876666767899999999 5999999999999999999998874 56677788999
Q ss_pred HhhhccccccchhhhhhccCCccc--chhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcc-
Q 009108 204 AGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL- 280 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~- 280 (543)
+|++.|...+...+++.|++|+++ |..++++++.+.++|..++|.+++++.+. .|||+.|++.++..++..+.+++
T Consensus 122 ~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 122 IAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-YGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred HHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998654 45688999999999999999999999866 79999999887655443332222
Q ss_pred ---cCCChhHHHhcCChHHHHHHH-----------HH-HhCchhhHHHHH-------HHHHhccCCCCcccchhhhhccc
Q 009108 281 ---SPESPRWLFQQGKKSEAEKSI-----------QT-LYGKERVSEVML-------DLTNAGQGSAEPEAGWFDLFSSR 338 (543)
Q Consensus 281 ---~~e~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~ 338 (543)
++|.++. ..+++.+...... .. .....+...... ......... ...+.-+++
T Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 274 (500)
T PRK09584 201 QRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF-----AMKGAARRK 274 (500)
T ss_pred HHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-----hcCHHHHHH
Confidence 2322110 0000000000000 00 000000000000 000000000 000111111
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-c-----CCC-chhHHHHHHHHHHHHHHHHH----HHhhhccCChhH
Q 009108 339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-V-----GIE-SDVAASALVGAANVFGTAVA----SSLMDRQGRKNL 407 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~-~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~~~~ 407 (543)
.... +..++.....+..+.....++.....+ . |.. +......+..+..++..++. +++.+|.+..+.
T Consensus 275 ~~~~--~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~ 352 (500)
T PRK09584 275 MIVA--FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHK 352 (500)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHH
Confidence 1111 111122222222233333333322111 1 221 12223344444444444444 555666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHH
Q 009108 408 LTFSFTGMAASMLLLSLSFTWKVL-APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN 486 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 486 (543)
+.+++++.+++++.+......... ...+.++.+...++.+.+ .....|....++.+..|++.||+++|+......+|.
T Consensus 353 ~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~g-e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~ 431 (500)
T PRK09584 353 FAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIG-ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAA 431 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887665332111 111223333333333333 344567777789999999999999998887777777
Q ss_pred HHHHHhhHHHHH----------hhccccchhhhhHHHHHHHHhhh
Q 009108 487 FVIGLYFLSVVN----------KFGISTVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 487 ~~~~~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~~ 521 (543)
.++..+.+.... ..++...|...++++++..++.+
T Consensus 432 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 432 LIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666543211 12355677777766554444333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=192.18 Aligned_cols=391 Identities=14% Similarity=0.081 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhh----hhcccchhhhh-hHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQLD-AVPLAAG 184 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~ 184 (543)
+...+...+......+..+.+.+++|.+.... +++..+..+...+.+|+.|+++| |+||||+++++ .+...++
T Consensus 10 ~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 10 ASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 33344445556666667777889999998888 99999999999999999999999 59999998875 6666666
Q ss_pred HHHHHHhhhHH-----------------HHHHHHHHHhhhccccccchhhhhhccCCcccc--hhhhHHHHHHHHHHHHH
Q 009108 185 AFLCATAQSVQ-----------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILA 245 (543)
Q Consensus 185 ~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~ 245 (543)
.++.+++++++ .++++-.+..++.....++..++++|.+|+++| +.+.++.+...++|.++
T Consensus 88 l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 88 VILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 67777876653 223333444557777888889999999998865 68999999999999999
Q ss_pred HHHhhcccC--C-------C-----CCchHHHHHHhHHHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhh
Q 009108 246 ALVAGLPLA--G-------N-----PLWWRTMFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV 310 (543)
Q Consensus 246 ~~~~~~~l~--~-------~-----~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (543)
|+.+++... + . ..+.|+.|++.++..++..+. .+..+|.|... +++.+++ +..
T Consensus 168 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~------~~~----- 235 (477)
T TIGR01301 168 GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS------EAA----- 235 (477)
T ss_pred HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh------hcc-----
Confidence 999887641 0 0 026799999988877775554 44567765311 0000000 000
Q ss_pred HHHHHHHHHhccCCCCcccchhhhhcc-----chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--cCCC--------
Q 009108 311 SEVMLDLTNAGQGSAEPEAGWFDLFSS-----RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS--VGIE-------- 375 (543)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------- 375 (543)
+.++.+.+..++++++. +..+.+.+..++.++. ...+..|.+.+..+ ++.+
T Consensus 236 ----------~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a----~f~~~~y~T~~vg~~v~~~~~~~~~~y~ 301 (477)
T TIGR01301 236 ----------PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIA----WFPFILFDTDWMGREVYGGSVNQGAKYD 301 (477)
T ss_pred ----------cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHHHhccHHHHHHHcCCCCcchhHHH
Confidence 00000011122333332 3444444444443332 33333333333322 1111
Q ss_pred ch----hHHHHHHHHHHHHHHHHHHHhhhccCC-hhHHHHHHHHHHHHHHHHHHHHhhccc-----------cccc--ch
Q 009108 376 SD----VAASALVGAANVFGTAVASSLMDRQGR-KNLLTFSFTGMAASMLLLSLSFTWKVL-----------APYS--GT 437 (543)
Q Consensus 376 ~~----~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--~~ 437 (543)
.. ........+...+.+++..++.+|+|+ |+....+.++.++++....+....... .+.. .+
T Consensus 302 ~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (477)
T TIGR01301 302 DGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKA 381 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHH
Confidence 11 113344455556777888999999985 666688888888887777654321100 0000 12
Q ss_pred hHHHHHHHHHHHhhcCcccccccccccccCh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc--cccchhhhhHHH
Q 009108 438 LAVLGTVLYVLSFSLGAGPVPALLLPEIFAS--RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG--ISTVYLGFATVC 513 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g--~~~~~~~~~~~~ 513 (543)
..++...+.+..+. ....+.++++++..++ +..|..+|+.|.+..+..++.....|.+.+..| ....+.+.++..
T Consensus 382 ~~l~~~~~~Gi~~A-~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~ 460 (477)
T TIGR01301 382 SALIVFAILGIPLA-ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAA 460 (477)
T ss_pred HHHHHHHHhhHHHH-HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHH
Confidence 33333444444443 2456777788888884 456999999999999999999998888777666 445666777778
Q ss_pred HHHHHhhheecccCCC
Q 009108 514 LLAVLYIAVNVVETKG 529 (543)
Q Consensus 514 ~~~~~~~~~~~~~~~~ 529 (543)
+++++..++.+|+.+.
T Consensus 461 ~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 461 FVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 8888888877777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=185.77 Aligned_cols=373 Identities=20% Similarity=0.162 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhc-ccchhhhhhHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~ 188 (543)
+...+...+..+.+.|.++..-++.|.|..++ |.+.++..+...++++++|.++||++ +|+++.+..++.++.....
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777788888889999999999 99999999999999999999999986 5778888888888877777
Q ss_pred HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHh-hcccCCC--CCchHHHHH
Q 009108 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA-GLPLAGN--PLWWRTMFG 265 (543)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~l~~~--~~~wr~~f~ 265 (543)
...++++.+++..++..+......|...++..+...+ ++.-.|-.....++|.+++... ++.+... ..+..+.++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 8889999998888888888888888888888887763 4455566666666666655332 1122111 122344566
Q ss_pred HhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 266 LAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 266 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
+.+...++.....+.+|+.|.. ++.+++.+ +....+..+++|+|+....++
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~---~~~~~~~~--------------------------~~~~~~~~~llk~~~~~~Fll 214 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPK---RSAKESVK--------------------------KLLGLDALKLLKNPRFLVFLL 214 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCccc---cccCCCcc--------------------------cccchHHHHHhcCccHHHHHH
Confidence 6666666665556667777631 11000000 001112346788888776666
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcC-CCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVFRSVG-IESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLL 422 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 422 (543)
...+.... ......|.+.++++.| .+.. .....+..++.++.-+..+++..|+|.++++.++.+..++=..++
T Consensus 215 ~~~l~~~~----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 215 AAFLIGIS----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 55554443 3445556666677777 3333 334455567888888999999999999999999998888877777
Q ss_pred HHHHhhcccccccchhHHHH----HHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHH-HHHHHHHHHHhhHHHH
Q 009108 423 SLSFTWKVLAPYSGTLAVLG----TVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM-HWISNFVIGLYFLSVV 497 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~~~ 497 (543)
+.... +.+..... ..+-+..++.... ....++.+..|++.|+++.++++.. ..+|..+|..+.|+++
T Consensus 291 a~~~~-------~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 291 AYFSD-------PWPFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred HHhcC-------CcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 65411 11111111 1234444443332 3344899999999999999998876 5689999999999999
Q ss_pred Hhhccccc------hhhhhHHHHHHHHhhheecccC
Q 009108 498 NKFGISTV------YLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 498 ~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
|+.|.+.. +.+.+++.++..++.+++.|++
T Consensus 363 ~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 363 DAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99886643 3444444444444444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=194.60 Aligned_cols=335 Identities=13% Similarity=0.109 Sum_probs=215.0
Q ss_pred hhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh----hcccc-hhhhhhHHHHHHHHHHHHhhh------
Q 009108 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTR-TFQLDAVPLAAGAFLCATAQS------ 193 (543)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------ 193 (543)
.+..++.+++|++.... |.+.++..+..++..|+.|+++|| +|||| .++.+.+..+++.++....++
T Consensus 31 ~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 36677888999999998 999999999999999999999998 78754 555677777777766555543
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhccC-CcccchhhhHHHHHHHHHHHHHHHHhhcc----cC--CCCCchHHHHHH
Q 009108 194 VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLP----LA--GNPLWWRTMFGL 266 (543)
Q Consensus 194 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l~--~~~~~wr~~f~~ 266 (543)
++.+++..++.+.+......+..++.+|+. +++||.+..++...+..+|..+++.+... +. +...+|+..+.+
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i 188 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 456666777777777777777788999988 56789988888877777776666543322 22 113579988888
Q ss_pred hHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 267 AAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 267 ~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
.+++.++..+..++ .+|.++. ++++ +.+....++++++++.++....
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~--~~~~------------------------------~~~~~~~~~~~~~n~~~~~l~~ 236 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTP--EVDN------------------------------SSSVWKDLKLLLGNSQWRIMFI 236 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCC--CCcC------------------------------CCCHHHHHHHHhCCchHHHHHH
Confidence 88877665544433 3443210 0000 0011223456778888777665
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVFRSVGIESDV-AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL 424 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 424 (543)
..++.............+|..+.. +..... .......+..+++.++.+++.||+|+|+....+..+.++..+.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~ 313 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF 313 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 544433322111122222222221 111111 2333445667788889999999999999888776655543332222
Q ss_pred HHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009108 425 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVV 497 (543)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 497 (543)
. ++.+.+...+..++.+.+.+ ...+..+++++|..+ .+..|...|+.+.+..+|..+++.+.|.+.
T Consensus 314 ~------~~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 314 I------PPSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred h------CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11122233333444444444 344566667777764 334577889999999999999999999999
Q ss_pred Hhhccc
Q 009108 498 NKFGIS 503 (543)
Q Consensus 498 ~~~g~~ 503 (543)
+..||.
T Consensus 387 ~~~Gy~ 392 (444)
T PRK09669 387 AWVDYV 392 (444)
T ss_pred HHcCCC
Confidence 988874
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=180.57 Aligned_cols=388 Identities=15% Similarity=0.068 Sum_probs=242.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh-hcccchhhhhhH
Q 009108 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAV 179 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~ 179 (543)
++...+..+|+..|..++.......+..+...|.+++.++. .++.+.|.....+.+.++|++.|| +|.|...++-++
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~ 118 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI 118 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence 44666777788889999999888888888999999998888 899999999999999999999996 788888777777
Q ss_pred HHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC
Q 009108 180 PLAAGAFLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (543)
Q Consensus 180 ~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 256 (543)
...++.++.+. .+.+|.++++||+.|+|.-...++-+.++.-||..+|.+.++|+.....-+|..+-..+.+++.+.
T Consensus 119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence 77788777654 589999999999999999888888899999999999999999999999999887766665555432
Q ss_pred CCchHHHH--HHhHHHHHHHHHHhcccCCChhHHHhcC-ChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhh
Q 009108 257 PLWWRTMF--GLAAIPSILLALGMGLSPESPRWLFQQG-KKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD 333 (543)
Q Consensus 257 ~~~wr~~f--~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (543)
.+ ..| .....+++...+-......+-......+ .++.+.+.+ +.++....+...+.+
T Consensus 199 -~~--~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAeril-----------------h~e~g~~Ge~pkLtd 258 (459)
T KOG4686|consen 199 -MG--RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERIL-----------------HLEEGFLGEEPKLTD 258 (459)
T ss_pred -HH--HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-----------------hhhcCcccCCccccc
Confidence 10 000 0000000000000000000000000000 001111111 111111111111112
Q ss_pred hhc-cchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHH
Q 009108 334 LFS-SRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLT 409 (543)
Q Consensus 334 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 409 (543)
... .+.+|.+.+...++... ..-+....+.+ .+.+|+++... ..........+..++.|.++||+|++-..+
T Consensus 259 v~~f~ppfw~~~iicv~yyva----~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv 334 (459)
T KOG4686|consen 259 VNTFYPPFWVLVIICVLYYVA----WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWV 334 (459)
T ss_pred ccccCccHHHHHHHHHHHHHH----HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence 211 23444444433333332 12222223333 35578877654 455555667788889999999999987766
Q ss_pred HHHHHHHHH-HHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHH
Q 009108 410 FSFTGMAAS-MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFV 488 (543)
Q Consensus 410 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 488 (543)
.+..+..+. -.++.+.. +-......+.+..+.+. ....+.+++.+.|++..|++.|.++.+.++|-.+
T Consensus 335 ~~a~~~tl~~H~~l~Ft~----------lsPy~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFTF----------LSPYTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred HHHHHHHHHHhhhHHhhh----------ccHHHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence 655444433 33333321 11223334444444321 1224456777889999999999999999999999
Q ss_pred HHHhhHHHHHhhc-cc---cchhhhhHHHHHHHHhhheecc
Q 009108 489 IGLYFLSVVNKFG-IS---TVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 489 ~~~~~g~~~~~~g-~~---~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
.|++.|.+.|+.| |. ..|++...+.++...+++..-+
T Consensus 404 i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 404 IPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred HhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 9999999999776 33 3345555555555555554433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=183.20 Aligned_cols=362 Identities=16% Similarity=0.108 Sum_probs=206.7
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-cccchhhhhhHHHHHHHHHHHHhh-hHHHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVL 203 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l 203 (543)
...++.+++|.++.+. +.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++..+ +...++++..+
T Consensus 32 L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l 109 (493)
T PRK15462 32 LILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI 109 (493)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4446677899999888 9999999999999999999999999 999999999999999988776543 22334444555
Q ss_pred HhhhccccccchhhhhhccCCcc--cchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 204 AGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|.+.+++.+. .||++.|.+.++..++..+..++.
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-~Gw~~~F~iaaigm~l~li~~~~~ 188 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSWAMGFGLAAVGMIAGLVIFLCG 188 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777787889999999875 689999999999999999999999999765 799999998766444433333221
Q ss_pred CCChhHH-HhcCChHHHHHHHHHH-------------hCchhhH-HHHHH------------HHHhccCCCCcccchhhh
Q 009108 282 PESPRWL-FQQGKKSEAEKSIQTL-------------YGKERVS-EVMLD------------LTNAGQGSAEPEAGWFDL 334 (543)
Q Consensus 282 ~e~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~l 334 (543)
.+..... ..++++.+.++..... ....... ..... .......+ .+-.|
T Consensus 189 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e- 263 (493)
T PRK15462 189 NRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA----ENQKQ- 263 (493)
T ss_pred hhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHH-
Confidence 1110000 0000000000000000 0000000 00000 00000000 00000
Q ss_pred hccc--hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--cCCCc-hhHHHHHHHHHHHHHHHHHHHhhhccCC--hh-
Q 009108 335 FSSR--YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS--VGIES-DVAASALVGAANVFGTAVASSLMDRQGR--KN- 406 (543)
Q Consensus 335 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~- 406 (543)
|+| ....+.+...+++..+....+.+..|.....+. .|++- ......+..+..++..++.+++-.|..+ |.
T Consensus 264 -r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~ 342 (493)
T PRK15462 264 -RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTV 342 (493)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 111 111122222222222222233333333222111 13221 2223445555555556655555444422 21
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHH
Q 009108 407 ----LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMH 482 (543)
Q Consensus 407 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 482 (543)
=..++.++.+++++.+.+.............++++...++.........|+..+.++++.|++.+|..+|+.....
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~ 422 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS 422 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 2556777777887777654432221111233344444444455556788899889999999999999999986633
Q ss_pred -HHHHHHHHHhhHHH
Q 009108 483 -WISNFVIGLYFLSV 496 (543)
Q Consensus 483 -~~g~~~~~~~~g~~ 496 (543)
.+|..++..+.+..
T Consensus 423 ~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 423 GAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHh
Confidence 56666655555443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=174.00 Aligned_cols=400 Identities=14% Similarity=0.069 Sum_probs=273.7
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhh
Q 009108 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (543)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~ 175 (543)
.+..+++|.++...++..+.+++.+-.++++..+....|| +.+.. -|+.-+|++.+....+++-|+.|++|-|..++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 3456677888888899999999988888888889999999 55555 79999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHh------hhHH--HHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHH
Q 009108 176 LDAVPLAAGAFLCATA------QSVQ--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (543)
Q Consensus 176 ~~~~~~~i~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 247 (543)
++..+.++|+.+-..+ +.++ ....+..+.+.+.-.....-..+..-||+++||..+..+-.++..+|..++.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 9999999999887665 3455 6677888888888777666678889999999999999999999999999888
Q ss_pred HhhcccCCCC-----CchHH--HHHHhHHHHHHHHHH-hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHH
Q 009108 248 VAGLPLAGNP-----LWWRT--MFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319 (543)
Q Consensus 248 ~~~~~l~~~~-----~~wr~--~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (543)
++...+..+. ..|-. .|+..+.+..+.+++ .+..++.|+... ....... +
T Consensus 194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp---s~s~~~~--~----------------- 251 (480)
T KOG2563|consen 194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP---SASQAAL--Q----------------- 251 (480)
T ss_pred hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC---chhHhhh--h-----------------
Confidence 8887776542 34554 344444444333332 222333332100 0000000 0
Q ss_pred hccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHHHHHHHHH
Q 009108 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIE--SDVAASALVGAANVFGTAVASS 397 (543)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~ 397 (543)
+.+-..+.++.++++.+....+++...... ++.+...+...+...+++ ..+.......++++++.++.|.
T Consensus 252 ----~~~f~~si~~~~~n~~F~il~~~ygi~~g~----F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 252 ----DASFPKSIKSCFKNRQFIILAICYGIGLGL----FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred ----cCcHHHHHHHHHcCccHHHHHHHHhhhHHH----HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 011233456788888887766666655543 444444444334445555 4455677778899999999999
Q ss_pred hhhccCChh-HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHH
Q 009108 398 LMDRQGRKN-LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 476 (543)
Q Consensus 398 l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 476 (543)
+.||.++-+ ..++......++...+..... .... .+.+.......+.+..+..|+..-+..|..-|..-++..|
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~----~~~~-~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsG 398 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVGTLMLLTCTL----FLGD-SVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSG 398 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc----cCCc-eEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccce
Confidence 999988744 444444444444222221111 1112 2223333334444556678888888888866666888999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhc----cccchhhhhHHHHHHHHhhheecccCCCCCHH
Q 009108 477 LSLGMHWISNFVIGLYFLSVVNKFG----ISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 533 (543)
Q Consensus 477 ~~~~~~~~g~~~~~~~~g~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (543)
+.+..+++.+++-..+.+...+..+ +...-+.....+++..++..+++++.++++.|
T Consensus 399 ll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 399 LLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred eEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 9999999999999999999888776 44445555666666666666666655555444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=192.54 Aligned_cols=380 Identities=14% Similarity=0.063 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhc-----ccchhhhhhHHHH-H
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQLDAVPLA-A 183 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~-i 183 (543)
....+..+..........+.+.+++|++.+++ +...+...+...+-.+ +|+++||++ ||+.++++.++.+ +
T Consensus 32 ~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~ 108 (468)
T TIGR00788 32 LQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAI 108 (468)
T ss_pred HHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence 33445555553344457778888899999999 9999999999999665 999999998 7777787777763 4
Q ss_pred HHHHHHHhhhHHHHH-HHHHHHhhhccccccchhhhhhccCCcccchhhhH---HHHHHHHHHHHHHHHhhcccCCCCCc
Q 009108 184 GAFLCATAQSVQTMI-IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS---VNQLFICVGILAALVAGLPLAGNPLW 259 (543)
Q Consensus 184 ~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~~~~G~~~~~~~~~~l~~~~~~ 259 (543)
+....+..++...+. +.+++.+++.+...++.-+++.|..+ +++....+ +......+|.++++.+++.+.+. .+
T Consensus 109 ~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-~~ 186 (468)
T TIGR00788 109 LYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-TL 186 (468)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 433344445544444 47899999999999999999999998 55544333 33344458999999999988765 78
Q ss_pred hHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccch
Q 009108 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (543)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (543)
||..|++.+++.++..+..++++|++.....+.++++.... ... .. ...+ .. .+.....++.++++.
T Consensus 187 ~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~-~~~-~~-~~~~---~~-------~~~~~~l~~~l~~~~ 253 (468)
T TIGR00788 187 TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM-ALL-TL-GVLA---NV-------KVQILGLRGAIQLLE 253 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh-hhh-hh-hHHH---HH-------HHHHHHHHHHHhcHH
Confidence 99999999888877766666677753100001000000000 000 00 0000 00 000112233455555
Q ss_pred hHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 009108 340 WKVVSVGAAL-FLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMA 416 (543)
Q Consensus 340 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 416 (543)
.+...+..++ +... ... ....|. ...+..|.++... .....+++.+++..+.+++.+|++.|+.+.++.++.+
T Consensus 254 i~~~l~fifl~~~~~--~~~-~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~ 329 (468)
T TIGR00788 254 IAKPLIFIFLSYANL--PGA-SGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYT 329 (468)
T ss_pred HHHHHHHHHHHHhhc--CCC-CceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 5543333333 1111 111 111111 1112456665533 5666778999999999999999999999988888777
Q ss_pred HHHHHHHHHH-hhcccc-cccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009108 417 ASMLLLSLSF-TWKVLA-PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 494 (543)
Q Consensus 417 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 494 (543)
++.+...... .+.... ....+.......+...+++....+. ..++.+..|++.+|+..++.+.+.++|..+++.+.|
T Consensus 330 ~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg 408 (468)
T TIGR00788 330 LSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV 408 (468)
T ss_pred HHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 7665432111 110000 0011222333344444444444444 447889999999999999999999999999999999
Q ss_pred HHHHhhc-----cccchhhhhHH
Q 009108 495 SVVNKFG-----ISTVYLGFATV 512 (543)
Q Consensus 495 ~~~~~~g-----~~~~~~~~~~~ 512 (543)
.+.+..| ++..+....+.
T Consensus 409 ~l~~~~g~~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 409 LLMETIGITCDNSNNLWLLILGH 431 (468)
T ss_pred HHHHHcCCCcccccchHHHHHHH
Confidence 9999888 66655544433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=180.31 Aligned_cols=374 Identities=16% Similarity=0.115 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhhhhHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH--HHH-HH
Q 009108 112 GAILFGYHLGVVNGALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA--AGA-FL 187 (543)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~--i~~-~~ 187 (543)
..+...+..+...|..+... ++.|++.+++ |.+.++..+...+.+|+.|.++||+|.||-++..+.+.. .+. +.
T Consensus 15 ~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~ 92 (412)
T PF01306_consen 15 FYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI 92 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444445666666666555 4589999999 999999999999999999999999997775544333222 122 22
Q ss_pred HHHhh----hHH-HHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 188 CATAQ----SVQ-TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 188 ~~~~~----~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
..+.+ |++ ..+++-+..|+......++.-+++.++.. +.+.=.|-.-++.++|.+++..++|.+.+ .+-+.
T Consensus 93 ~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~--i~p~~ 168 (412)
T PF01306_consen 93 YVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFN--INPNI 168 (412)
T ss_dssp HTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeee--eCccH
Confidence 22222 222 22222233333333334444444444332 23566777788889999999999888864 45567
Q ss_pred HHHHhHHHHHHHHHHhccc-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 263 MFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
.||+..+.+++..++.++. |+.++.....+.....++ +.+..+..+++|.+++|
T Consensus 169 ~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~l~k~~~fw 223 (412)
T PF01306_consen 169 IFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKD-------------------------KVSLKDVLSLFKMRNFW 223 (412)
T ss_dssp HHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-------------------------------HHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCC-------------------------CCcHHHHHHHhcchhHH
Confidence 7887766665554444443 443321111110000000 00011235678888888
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCc----h--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES----D--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGM 415 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 415 (543)
.+.+........ +.......+.++..+-.+. . +.....-.+..++.-.+.+++.+|+|.|+.++++..++
T Consensus 224 ~~~l~v~g~~~~----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~ 299 (412)
T PF01306_consen 224 FFVLFVIGVAAI----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 766554444333 3333333344444332222 1 22444455677788889999999999999999999988
Q ss_pred HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHH-HHHHHHHHHHHHHhhH
Q 009108 416 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS-LGMHWISNFVIGLYFL 494 (543)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g 494 (543)
.+=..+.++.. +.+.....-.+-+.-+.....+..- |+++.+|++..++...+. +...+++.++.+.+.|
T Consensus 300 ~iRi~~~~~~~--------~~~~i~~~klLH~~e~~l~lva~fk-YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 300 AIRIIGSGFAT--------NPWVISLIKLLHALEFPLLLVAAFK-YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp HHHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc--------chHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 88888877641 2344444455555555444444444 889999999989998885 6788999999999999
Q ss_pred HHHHhhccccchhhhhHHHHHHHHhhheecccCCC
Q 009108 495 SVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKG 529 (543)
Q Consensus 495 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (543)
.++|+.|++.+|++++++.++..++..+.+++.++
T Consensus 371 ~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 371 YLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99999999999999998888777777766665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=186.22 Aligned_cols=353 Identities=13% Similarity=0.065 Sum_probs=217.3
Q ss_pred HHHHHHHHHhhh-hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhh----hhcc-cchhhhhhHHHHHHHHH
Q 009108 114 ILFGYHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGR-TRTFQLDAVPLAAGAFL 187 (543)
Q Consensus 114 ~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~ 187 (543)
+...+....+.+ +..++.+.+|++...+ |.+..+.-+.-++..|+.|.++| |+|| |+.++++.+..+++.++
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l 93 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL 93 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence 333333333333 5566777789999888 99999999999999999999999 6698 55666787777777666
Q ss_pred HHHhh------hHHHHHHHHHHHhhhccccccchhhhhhccC-CcccchhhhHHHHHHHHHHHHHHHHhhcc----cC--
Q 009108 188 CATAQ------SVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLP----LA-- 254 (543)
Q Consensus 188 ~~~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l~-- 254 (543)
+...+ .+..+++..++.+++......+..++..|.. +++||.+..++-..+.++|..+.+.+... +.
T Consensus 94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~ 173 (473)
T PRK10429 94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG 173 (473)
T ss_pred HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 64433 2345666677778888888888889999998 58999998888666666664444333322 11
Q ss_pred CCCCchHHHHHHhHHHHHHHHHHhc-ccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhh
Q 009108 255 GNPLWWRTMFGLAAIPSILLALGMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD 333 (543)
Q Consensus 255 ~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (543)
+...+|+....+.+++.++..+..+ ..+|.+.....+.+ + +++.+-+..++.
T Consensus 174 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~--------------------------~~~~~~~~~~~~ 226 (473)
T PRK10429 174 DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA-E--------------------------GSHLTLKDIVAL 226 (473)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc-c--------------------------ccCCCHHHHHHH
Confidence 1224688888777777666444433 34554320000000 0 000011122344
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHH
Q 009108 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFS 411 (543)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 411 (543)
+++++.++..+...++.... ......+.+++.+....+.. ........++.+++.++.+++.||+|+|+.+..+
T Consensus 227 ~~~n~~~~~ll~~~~~~~~~----~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~ 302 (473)
T PRK10429 227 IYKNDQLSCLLGMALAYNIA----SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGA 302 (473)
T ss_pred HhcCHHHHHHHHHHHHHHHH----HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 55676666555544443332 22222233333332221222 1233444577888999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccC-------hhhhhHHHHHHHHHHHH
Q 009108 412 FTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWI 484 (543)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~ 484 (543)
..+.+++.+.+...... .+...+..++...+.+.+.+. ......++++|..+ .+..|..+|....+..+
T Consensus 303 ~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 303 SIFPVLSCGVLLLMGLA---APHNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred HHHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 77666555444332111 111222333333333333332 33445557777754 44457799999999999
Q ss_pred HHHHHHHhhHHHHHhhccc
Q 009108 485 SNFVIGLYFLSVVNKFGIS 503 (543)
Q Consensus 485 g~~~~~~~~g~~~~~~g~~ 503 (543)
+..+++.+.|.+.+..||.
T Consensus 379 ~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 379 GSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999999999999988873
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=178.73 Aligned_cols=338 Identities=19% Similarity=0.154 Sum_probs=243.8
Q ss_pred hhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhh----hhcccch-hhhhhHHHHHHHHHHHHh-h------
Q 009108 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRT-FQLDAVPLAAGAFLCATA-Q------ 192 (543)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~i~~~~~~~~-~------ 192 (543)
...+++.+.+|+++... |.+..+.-+-.++..|+.|.++| |+||||. ++++.+..+++.+++... +
T Consensus 23 ~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 36677888889999888 99999999999999999999999 8997665 456778888888777765 4
Q ss_pred -hHHHHHHHHHHHhhhccccccchhhhhhccCC-cccchhhhHHHHHHHHHHHHHHHHhhcccCC----CC-C-chHHHH
Q 009108 193 -SVQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAG----NP-L-WWRTMF 264 (543)
Q Consensus 193 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~----~~-~-~wr~~f 264 (543)
....+.+..++..++......+..++..|..+ ++||.+..+.-..+..+|.++...+...+.+ .. . +|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 23446777777799999888899999999998 5789999999888888888655555554432 11 1 799999
Q ss_pred HHhHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHH
Q 009108 265 GLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV 343 (543)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (543)
++.+++.++..+...+ .+|.++. .++ ++++.+-+..++++++++.++..
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~~------~~~------------------------~~~~~~~~~~~~~~~~nr~~~~l 230 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSVE------VTE------------------------QEKKISLRDSLRSLFRNRPFRIL 230 (428)
T ss_pred HHHHHHHHHHhhhhhheeeecccc------ccc------------------------cccccccccchhhhcccchHHHH
Confidence 9998888776655444 4551110 000 01111234456788888888887
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHH
Q 009108 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLS 423 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 423 (543)
.+...+..+..........+|..+..+.. +..........++.+++.++.++++||+|+|+.+..+..+.+++.+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGNE--GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 77766665554444444455554443322 2223355566788899999999999999999999999999888888776
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009108 424 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSV 496 (543)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 496 (543)
+... .+.+...+...+.+.+.+. .....+++.+|..+ ++..|..+|+.+....++..+++.+.+.+
T Consensus 309 ~~~~------~~~~~~~i~~~l~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 309 FLGP------GSPWLVLILFILAGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHh------hhHHHHHHHHHHhHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 6521 1334445555555555543 34566668888875 34469999999999999999999999999
Q ss_pred HHhhccc
Q 009108 497 VNKFGIS 503 (543)
Q Consensus 497 ~~~~g~~ 503 (543)
.+..|+.
T Consensus 382 l~~~Gy~ 388 (428)
T PF13347_consen 382 LALVGYD 388 (428)
T ss_pred HHHhCcC
Confidence 9888764
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-18 Score=171.13 Aligned_cols=352 Identities=16% Similarity=0.101 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhcccchhh-hhhHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccchhhhh
Q 009108 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYI 219 (543)
Q Consensus 143 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i 219 (543)
.++..++..+..++..|+.|.++|+-|+||.++ +..++..+++.+..+. .+++...+..++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999999999999766554 4555555566666664 3455555555666667777788888999
Q ss_pred hccCCcccc--------------------------hhhhHHHHHHHHHHHHHHHHhhcccCCC-------CCchHHHHHH
Q 009108 220 SEISPTEIR--------------------------GALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFGL 266 (543)
Q Consensus 220 ~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~l~~~-------~~~wr~~f~~ 266 (543)
.|..+++++ ++..+.-.....+|.++..++...+... ...-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999998888 8888888887878877666554433211 2346888888
Q ss_pred hHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 267 AAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 267 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
.++.-++..+ .++++||.|+....++.........+++ ..+++++.|.+.....++
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------~~t~k~~~~~~~~~~fLi 288 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------WRTFKEIRKLRQLFLFLI 288 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------HHHHHHHHhChHHHHHHH
Confidence 8888766555 4555677664211111111112222221 122344444555555444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCCh--hHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRK--NLLTFSFTGMAASML 420 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~ 420 (543)
+.+++.- +...+......+. +.++++.... ......+.+++|.++.|++.||+|.| +++..+..+..+..+
T Consensus 289 a~~l~~d----g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 289 AYFLYSD----GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 4443332 2333333333333 4688887765 55667889999999999999999998 777666655533332
Q ss_pred HHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 009108 421 LLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF 500 (543)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~ 500 (543)
.-.+..........+.+...+..++++.+ ..+..+..-++.+++.|+++.+..+|++...+...+.+||.+.|.+.+.+
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~-~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLF-MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221111111112223333333333333 33456777789999999999999999999999999999999999999998
Q ss_pred c-cccchhhhhHHHHHHHHhhhe
Q 009108 501 G-ISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 501 g-~~~~~~~~~~~~~~~~~~~~~ 522 (543)
| .+..+....++.+++.++.+.
T Consensus 444 g~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 444 GSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred CCchhHHHHHHHHHHHHHHHHhh
Confidence 8 677787777777777766543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-18 Score=170.64 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=211.1
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh----hcccch-hhhhhHHHHHHHHHHHHhhh------H
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRT-FQLDAVPLAAGAFLCATAQS------V 194 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~~~~~~~~~------~ 194 (543)
+..++.+.+|++.... |.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++.+++...++ .
T Consensus 32 l~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~ 109 (460)
T PRK11462 32 MMFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM 109 (460)
T ss_pred HHHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 5566778889999888 999999999999999999999995 798654 45676778887776655543 4
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhccCC-cccchhhhHHHHHHHHHHHHHHHHhhcccCC------CCCchHHHHHHh
Q 009108 195 QTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAG------NPLWWRTMFGLA 267 (543)
Q Consensus 195 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~------~~~~wr~~f~~~ 267 (543)
..+.+..++..++......+-.++..|..+ ++||.+..++...+..+|..+++.+...+.. ...+|+....+.
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 456667777788888888888889999887 7889999999999988887776655433221 124688887777
Q ss_pred HHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHH
Q 009108 268 AIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (543)
Q Consensus 268 ~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 346 (543)
+++.+++.+..++ .+|.++. ++++. .-+..++.+++++.++.+...
T Consensus 190 ~ii~~i~~~i~~~~~kE~~~~---~~~~~------------------------------~~~~~l~~~~~Nk~~~~l~~~ 236 (460)
T PRK11462 190 SVVAFMMLAFCFFTTKERVEA---PPTTT------------------------------SMREDLRDIWQNDQWRIVGLL 236 (460)
T ss_pred HHHHHHHHHHHHhcceeccCC---CccCC------------------------------CHHHHHHHHhCChHHHHHHHH
Confidence 7776665544433 3443210 00000 011123456677777666544
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 009108 347 AALFLFQQLAGINAVVYYSTSVFRSVGIESD-VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLS 425 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (543)
..+.............+|..++. +.... ........++.+++.++++++.||+++|+....+..+..+..+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~ 313 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV 313 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433333334444444432 22222 224455667888899999999999999988765544433333322221
Q ss_pred HhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 426 FTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
+........+..++.+.+. ....+..+.+..|..+ .+..|...+.......+|..+++.+.|.+.+
T Consensus 314 ------~~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 314 ------PMQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred ------chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111112222223333332 2233444556666654 3334666677778999999999999999998
Q ss_pred hhccc
Q 009108 499 KFGIS 503 (543)
Q Consensus 499 ~~g~~ 503 (543)
..||.
T Consensus 387 ~~Gy~ 391 (460)
T PRK11462 387 YGGYD 391 (460)
T ss_pred HcCCC
Confidence 87763
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=170.51 Aligned_cols=332 Identities=14% Similarity=0.095 Sum_probs=199.7
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh----cccchh-hhhhHHHHHHHHHHHHhh-------h
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF----GRTRTF-QLDAVPLAAGAFLCATAQ-------S 193 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~~~~-------~ 193 (543)
+.+++.+.+|++..+. |.+.++..+..++..+++|+++||. |||+.. +.+.+...+..++....+ .
T Consensus 31 l~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 31 LLSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 4567888889999888 9999999999999999999999996 767644 556555554444432111 2
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhccCC-cccchhhhHHHHHH-----HHHHHHHHHHhhcccCCC-CCchHHHHHH
Q 009108 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLF-----ICVGILAALVAGLPLAGN-PLWWRTMFGL 266 (543)
Q Consensus 194 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~~~~~~~~~l~~~-~~~wr~~f~~ 266 (543)
.+.+++..++.+++.+...++..++..+... +++|.+..++-..+ ..+|..++|+++...... ..+|.....+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~ 188 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV 188 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 2334555677788888888777777776654 46788776655443 335566666666543211 0122222223
Q ss_pred hHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 267 AAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 267 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
.+++.++..+ .....+|+++. +.++ +.-+..++++++++.+....+
T Consensus 189 ~~v~~~~~~~~~~~~~~e~~~~---~~~~------------------------------~~~~~~~~~l~~n~~f~~~~~ 235 (448)
T PRK09848 189 LAIAGMVLYFICFKSTRENVVR---IVAQ------------------------------PSLKISLQTLKRNRPLFMLCI 235 (448)
T ss_pred HHHHHHHHHHHHHcCcEeccCC---CccC------------------------------CCHHHHHHHHhCCchHHHHHH
Confidence 3333333222 22233554220 0000 001123456788888776665
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH-H-HHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA-A-SALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLL 422 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 422 (543)
..++..... .......+++.++ .+.+.... . .....++.+++.++.+++.||+++|+.+..+..+.+++.+.+
T Consensus 236 ~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~ 311 (448)
T PRK09848 236 GALCVLIST----FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF 311 (448)
T ss_pred HHHHHHHHH----HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 555444432 2223334433332 34433322 2 222245677788999999999999999999888777776665
Q ss_pred HHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChh-------hhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009108 423 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR-------IRAKAVALSLGMHWISNFVIGLYFLS 495 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~ 495 (543)
.+. +..+.+.......+.+.+.+.. .+...++..|..|.+ ..|...|+.+....+|..+++.+.+.
T Consensus 312 ~~~------~~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 312 FWV------SVWSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHc------CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 1112222333334444444332 344455666776543 45999999999999999999999999
Q ss_pred HHHhhccc
Q 009108 496 VVNKFGIS 503 (543)
Q Consensus 496 ~~~~~g~~ 503 (543)
+.+..||.
T Consensus 385 ~l~~~G~~ 392 (448)
T PRK09848 385 ILGLSGYI 392 (448)
T ss_pred HHHHcCCC
Confidence 99887763
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=162.26 Aligned_cols=275 Identities=15% Similarity=0.106 Sum_probs=184.3
Q ss_pred HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCC-----------
Q 009108 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP----------- 257 (543)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~----------- 257 (543)
+...+|+.++++-++.|.|.+...+.++.++++..+++++.+.+++.+..+++|.+++|++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 456789999999999999999999999999999999999999999999999999999999998765211
Q ss_pred ----CchHHHHHHhHHHHHHHHHHhccc--CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccch
Q 009108 258 ----LWWRTMFGLAAIPSILLALGMGLS--PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331 (543)
Q Consensus 258 ----~~wr~~f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (543)
..|+++|++.+++.++..+.+.+. ||.++ + +.++..+ ++....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~-~~~~~~~--------------------------~~~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----A-DVARVSS--------------------------GDTTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----c-ccccccc--------------------------ccccch
Confidence 369999997777665555444443 44321 0 0000000 000011
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---cCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChh
Q 009108 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS---VGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKN 406 (543)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~ 406 (543)
+++++++..+...+..+++... ......|.+.++.+ .+.++... .......+.++|+++++++.||+++|+
T Consensus 134 ~~~~~~~~~~l~~~~~f~yvg~----e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQFTHLVLGALGIFVYVGA----EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 2344455555444444444433 44445555555543 36655433 566677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHH
Q 009108 407 LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN 486 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 486 (543)
.+..+..+.+++.+++... +.........+++.+.+ ...|...+...+..|++ .+++.++. ....+|+
T Consensus 210 ~l~~~~~l~~~~~~l~~~~---------~~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg 277 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT---------HGYVAMWFVLALGLFNS-IMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGG 277 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcc
Confidence 8887776666665444321 11222233334443333 34555555666777754 66777775 6788999
Q ss_pred HHHHHhhHHHHHhhccccchhhhh
Q 009108 487 FVIGLYFLSVVNKFGISTVYLGFA 510 (543)
Q Consensus 487 ~~~~~~~g~~~~~~g~~~~~~~~~ 510 (543)
++.|.+.|.+.|..|.+..+++..
T Consensus 278 ~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 278 AIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred hHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999999877776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=154.64 Aligned_cols=397 Identities=17% Similarity=0.119 Sum_probs=247.8
Q ss_pred hhhHHHHHHHcC----CCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-cccchhhhhhHHHHHHHHHHHHhh--hHHH
Q 009108 124 NGALEYLAKDLG----IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ--SVQT 196 (543)
Q Consensus 124 ~~~~~~i~~~~~----~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~--~~~~ 196 (543)
.++.-++..+++ .++++. .-+.++|..-.-+..+++|+++||+ |+|+.++.|.++..+|.++.+... +...
T Consensus 42 aiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~g 119 (498)
T COG3104 42 AILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG 119 (498)
T ss_pred HHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccH
Confidence 446667777777 888877 7778888777778899999999996 999999999999999999999884 7889
Q ss_pred HHHHHHHHhhhccccccchhhhhhccCCccc--chhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHH
Q 009108 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL 274 (543)
Q Consensus 197 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 274 (543)
++++-++.++|.|..-+....+++|.+|+++ |-..++++.++.++|.+++|++.+++.++ .||...|.+.++-..+.
T Consensus 120 l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~-~g~~~gF~~aavGm~~g 198 (498)
T COG3104 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN-YGWHVGFGLAAVGMIIG 198 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998643 57889999999999999999999999877 89999998888777666
Q ss_pred HHHhcccCCC---------hhHHHhcCChHHHHHHHHHH--------hCchhhHHHHHHH----HH--hccCCCCcccch
Q 009108 275 ALGMGLSPES---------PRWLFQQGKKSEAEKSIQTL--------YGKERVSEVMLDL----TN--AGQGSAEPEAGW 331 (543)
Q Consensus 275 ~~~~~~~~e~---------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----~~--~~~~~~~~~~~~ 331 (543)
++..++.+.. +..+..+............. ...+..+...... .. -.+..+.++..
T Consensus 199 l~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 277 (498)
T COG3104 199 LVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF- 277 (498)
T ss_pred HHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-
Confidence 5555443321 11110000000000000000 0000000000000 00 00000001100
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc--CCCch-hHHHHHHHHHHHHHHHHHHHhhhccCCh---
Q 009108 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--GIESD-VAASALVGAANVFGTAVASSLMDRQGRK--- 405 (543)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~--- 405 (543)
.+.-|-.....+++...+++..+-...+.+..|.....+.. |++-. .....+..+.-++..++..++..+.+++
T Consensus 278 ~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ 357 (498)
T COG3104 278 DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQ 357 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCC
Confidence 11111122233344444444444445555666655544322 22222 2234444555556666666655553322
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHH
Q 009108 406 ----NLLTFSFTGMAASMLLLSLSFTWKVL-APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLG 480 (543)
Q Consensus 406 ----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 480 (543)
.-+.++..++..+++++.....+... ....+.++++...++.........|+...++....|+...+..+++...
T Consensus 358 ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfL 437 (498)
T COG3104 358 PSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFL 437 (498)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 22445566666666666655333322 2223344555555555555667788888899999999999999999998
Q ss_pred HHHHHHHHHHHhhHH------HHHhhccccchhhhhHHHHHHHHhhheec
Q 009108 481 MHWISNFVIGLYFLS------VVNKFGISTVYLGFATVCLLAVLYIAVNV 524 (543)
Q Consensus 481 ~~~~g~~~~~~~~g~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 524 (543)
....+..++..+.+. ..+.......|+.++...++..++.....
T Consensus 438 t~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 438 TVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred HHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 888888888777763 33445556677777777666655544433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-17 Score=148.58 Aligned_cols=353 Identities=15% Similarity=0.112 Sum_probs=230.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhh-hhhHHHHHHHHHHHHhhh--HH-HHHHHHHHHhhhccccccc
Q 009108 139 NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCATAQS--VQ-TMIIGRVLAGIGIGISSAI 214 (543)
Q Consensus 139 ~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~~--~~-~l~~~r~l~G~~~g~~~~~ 214 (543)
.+...+...++..+..++..|+.|.++|+.|+||... +...+..++..+..++++ ++ ..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 3345689999999999999999999999999766554 445555555666666654 44 4555568888898888899
Q ss_pred hhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhh--cccC---------------CCCCchHHHHHHhHHHHHHHHHH
Q 009108 215 VPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LPLA---------------GNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 215 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~l~---------------~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
..+++.+..++++-++..++-.....+|..+.-+.. ..+. .....-|..+.+.++.-++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998777776665555555544333221 1111 02245788898888888776664
Q ss_pred hcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhh
Q 009108 278 MGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLA 356 (543)
Q Consensus 278 ~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (543)
.++ .++.++- ....++......+++ +.+++++.+.+.....+++..++.-.
T Consensus 216 m~~~v~~~~~~--~~~~~~~l~~g~k~L-----------------------~~t~k~i~~~~~i~~FLiA~~~~~DG--- 267 (438)
T COG2270 216 MILNVHDAEKI--SSPPPTALRNGFKEL-----------------------KSTFKEIRGRKNLVLFLIARFFYIDG--- 267 (438)
T ss_pred HHhcccccccc--cccchHHHHHHHHHH-----------------------HHHHHHHhcccchHHHHHHHHHHHhh---
Confidence 444 4554431 001111222222221 23456666666666666555544332
Q ss_pred hhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 357 GINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
.+.+......+-. .+|++.... ......+.+++|+++.|++.||+|.|+++..+.++..+.++...+..
T Consensus 268 -v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~------- 339 (438)
T COG2270 268 -VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE------- 339 (438)
T ss_pred -HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-------
Confidence 3333334444433 678887755 45566789999999999999999999998888877777666655431
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcc-ccchhhhhHH
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGI-STVYLGFATV 512 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~-~~~~~~~~~~ 512 (543)
......+..++++.. ..+.....-++..+..|+++.++.+|+++..+.....+||...+.+.+.+|- +..+....++
T Consensus 340 -~~~~f~i~gll~g~s-~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 340 -GELDFWILGLLVGTS-LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred -ccHHHHHHHHHHHHh-cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 112222222333333 3345667777999999999999999999999999999999999999998873 4445555555
Q ss_pred HHHHHHhhheecccCCCC
Q 009108 513 CLLAVLYIAVNVVETKGR 530 (543)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~ 530 (543)
..++.++ +...|..+++
T Consensus 418 l~iGl~~-L~~v~~~~~~ 434 (438)
T COG2270 418 LLIGLLL-LLRVKVPGRR 434 (438)
T ss_pred HHhhHhh-EEeecCCCCc
Confidence 5555543 4445544443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-17 Score=154.72 Aligned_cols=337 Identities=18% Similarity=0.164 Sum_probs=229.6
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh----hccc-chhhhhhHHHHHHHHHHHHhhh------H
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRT-RTFQLDAVPLAAGAFLCATAQS------V 194 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~ 194 (543)
++-++.+.+|++.... |.+..+--+--++..|+.|.++|| +||| +.++.+.+.+++.+.++-.+++ .
T Consensus 35 Ll~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~ 112 (467)
T COG2211 35 LLFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL 112 (467)
T ss_pred HHHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence 4456677789998888 999888888899999999999994 7865 5667777999999988888763 4
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhccCC-cccchhhhHHHHHHHHHHHHHHHHhhc----ccCCC--CCchHHHHHHh
Q 009108 195 QTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGL----PLAGN--PLWWRTMFGLA 267 (543)
Q Consensus 195 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~----~l~~~--~~~wr~~f~~~ 267 (543)
...++...+.+++......+-.++..+..+ ++||.+..++-..+.++|..+...+.. .+.+. ..||+..-++.
T Consensus 113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~ 192 (467)
T COG2211 113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL 192 (467)
T ss_pred HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence 556777899999999888888889888876 688999999988888888544333332 22222 46899888888
Q ss_pred HHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHH
Q 009108 268 AIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (543)
Q Consensus 268 ~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 346 (543)
++++++..+..++ ..|.+.. ....++ ..+.+.+..+..+++|+.+....+.
T Consensus 193 ~vi~~i~~l~~~~~v~ER~~~---~~~~~~-------------------------~~~~~~~~~~~~~~~Nrp~~~~l~~ 244 (467)
T COG2211 193 GVIGVILLLFCFFNVKERVVE---TQPTKT-------------------------GVKLKLKDSFLLIFKNRPLLLLLLM 244 (467)
T ss_pred HHHHHHHHHHHHHHhhcccCc---cccCcc-------------------------cccccHHHHHHHHHccchHHHHHHH
Confidence 8888776665544 3443320 000000 0001112223457788887776664
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHH
Q 009108 347 AALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL 424 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 424 (543)
..+.............+|..+. +|.+.... .......+.+++.++..++.+|+|+|++...+.++.+++.+++.+
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f 321 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYV---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF 321 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEE---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHh
Confidence 4444443222223333333332 23333322 334445566666899999999999999999999999988888877
Q ss_pred HHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009108 425 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVV 497 (543)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 497 (543)
.. ..+....++..++.+.+.+ ...++.+++++|..+ .+..|...|.+..+.-+|.+++..+.|++.
T Consensus 322 ~~------~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 322 TP------AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred hc------CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 52 1122333333344334433 456788888888753 555688999999999999999999999999
Q ss_pred Hhhcc
Q 009108 498 NKFGI 502 (543)
Q Consensus 498 ~~~g~ 502 (543)
+..||
T Consensus 395 ~~~Gy 399 (467)
T COG2211 395 GAIGY 399 (467)
T ss_pred HHcCC
Confidence 98875
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=164.68 Aligned_cols=392 Identities=15% Similarity=0.151 Sum_probs=231.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcc-cchhhhhhH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAV 179 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~ 179 (543)
|..+.+..+..++.....+++.+..-...++ .+.+.+.. |++.++..++.+++++.+|+.+.|.+. |+.++.|.+
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ff--G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFF--GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL 110 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchh--hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence 4455566667777777777766644344445 45555555 999999999999999999999999997 899999999
Q ss_pred HHHHHHHHH-HHh---h-hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccC
Q 009108 180 PLAAGAFLC-ATA---Q-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (543)
Q Consensus 180 ~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 254 (543)
+..+++++. ++. + ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.++..+.
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 999999988 332 3 67889999999999977 66788899999999999999999999988888888888876554
Q ss_pred CCC-Cc-----------hHHHHHHhHHHHHHHHHHh-cccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhc
Q 009108 255 GNP-LW-----------WRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321 (543)
Q Consensus 255 ~~~-~~-----------wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (543)
.-. .| +-.+-|+.+++.++.++.. +++.|.++...+++.+++..+ +.+.
T Consensus 190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~------------------~~~~ 251 (488)
T KOG2325|consen 190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEE------------------KSDI 251 (488)
T ss_pred hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhh------------------ccch
Confidence 210 11 2334466677776655443 445665542211111111000 0000
Q ss_pred cCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH---HHHHHHHHHHHHH-HHHHH
Q 009108 322 QGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA---ASALVGAANVFGT-AVASS 397 (543)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~g~ 397 (543)
+ +.-..+..+...+++....+...+.....-..+.+.....++...... ......+.+++.. +...+
T Consensus 252 ~---------~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~ 322 (488)
T KOG2325|consen 252 E---------KVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLY 322 (488)
T ss_pred h---------hhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHH
Confidence 0 000112333444444444444443333334444444444455544432 2222222222222 22222
Q ss_pred hhh---ccCChhHHHHHHHHHHHHHHHHHHHHhhc--cccc--------------------ccchhHHHHHHHHHHHhhc
Q 009108 398 LMD---RQGRKNLLTFSFTGMAASMLLLSLSFTWK--VLAP--------------------YSGTLAVLGTVLYVLSFSL 452 (543)
Q Consensus 398 l~d---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~ 452 (543)
..- ++.+|+.+..++........+........ .... ......+.....+.++.+.
T Consensus 323 ~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~ 402 (488)
T KOG2325|consen 323 IFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAF 402 (488)
T ss_pred HHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecccc
Confidence 222 33445555554333333333322211100 0000 0011111111111122211
Q ss_pred C-cccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheec
Q 009108 453 G-AGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNV 524 (543)
Q Consensus 453 ~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 524 (543)
- ......++-+|...++.++++.|++......+..++|.+........|+++.+.+.++..++...+...+.
T Consensus 403 P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~ 475 (488)
T KOG2325|consen 403 PFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFL 475 (488)
T ss_pred ccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12223446678888999999999999999999999999999999999998888777766666555444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=149.82 Aligned_cols=305 Identities=15% Similarity=0.173 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHH
Q 009108 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (543)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 183 (543)
.++.++++..+..++..+.+...+..+.+.|+++.++. |++.+.|-++..+...+..+..-|.-|-+.+-+|++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 34555677778888888888999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--------------------h---------------------------h----HH-HHHHHHHHHhhhcccc
Q 009108 184 GAFLCATA--------------------Q---------------------------S----VQ-TMIIGRVLAGIGIGIS 211 (543)
Q Consensus 184 ~~~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~g~~ 211 (543)
+++++++- + + .+ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99998762 0 0 12 4677889999999999
Q ss_pred ccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCC------------------CchHHHHHHhHHHHHH
Q 009108 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP------------------LWWRTMFGLAAIPSIL 273 (543)
Q Consensus 212 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~------------------~~wr~~f~~~~~~~~~ 273 (543)
++....|+-|...+++-+..+|+......+|.++|.++++++...+ .-|..-|++.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764210 1277777788888888
Q ss_pred HHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHH
Q 009108 274 LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353 (543)
Q Consensus 274 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 353 (543)
..+.++++|.+.+...++ +..+..+..+...+..+.+.. ..+..++-....+++++++.+....++..+...
T Consensus 335 ~a~p~f~fPk~lp~~~~~-~~~~~~~~~k~~~~~~~~~~~------~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~- 406 (735)
T KOG3626|consen 335 SAVPLFFFPKELPKSQKR-KRARDLHVLKTESGGAKSDKT------FGKKIKDFPKSIKRLLSNPIFMLVVLASVIESL- 406 (735)
T ss_pred HHHHHHhCcccCcccccc-chhhhhcccccccccccCCcc------hhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH-
Confidence 888888887664411110 000000000000000000000 000000112345667777766665555444443
Q ss_pred HhhhhHHHHHHHHHHHHH-cCCCchhH--HH-HHHHHHHHHHHHHHHHhhhccCC--hhHHHHHHHHHHHHHHH
Q 009108 354 QLAGINAVVYYSTSVFRS-VGIESDVA--AS-ALVGAANVFGTAVASSLMDRQGR--KNLLTFSFTGMAASMLL 421 (543)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 421 (543)
.+.....|+|.+++. +|.++..+ +. .+...+..+|.+++|++.+|+.. |....+..+...+.++.
T Consensus 407 ---~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 407 ---AITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred ---HHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 467777788887765 67766655 22 22334566788999999998753 44444444444433333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-15 Score=136.68 Aligned_cols=330 Identities=16% Similarity=0.080 Sum_probs=216.2
Q ss_pred HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhc-----ccchhhh-hhHHHHHHHHHHHHh-----h------
Q 009108 130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQL-DAVPLAAGAFLCATA-----Q------ 192 (543)
Q Consensus 130 i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~------ 192 (543)
|..|++++..-. +.+.++..+.. ...+.+|+.||+.+ ||..+++ |.++...+..+..++ .
T Consensus 6 MIvEL~vpA~lv--~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 6 MIVELGVPAWLV--ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred HHHHhccHHHHH--HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 567888887777 88888887764 56999999999999 8876655 555555555554442 2
Q ss_pred --h-HH--HHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHh
Q 009108 193 --S-VQ--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (543)
Q Consensus 193 --~-~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~ 267 (543)
. .+ ...+...+.|+|.+...+...+++.|..++++|+++.++......+|.+++.++.+.+.+....-|..-.+.
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 1 12 244556888999999999999999999999999999999999999999999999888776533333333332
Q ss_pred --HHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 268 --AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 268 --~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
+++.+++.++..+-.|.+.....+. .+++++.-...+++++.++..+++++
T Consensus 163 ~~a~i~~~l~~ia~wg~E~r~~~~~~~---------------------------~~~~~~~f~~a~~~~~~~~~a~~f~~ 215 (403)
T PF03209_consen 163 GVALIALLLNLIALWGQEPRRSRRAAA---------------------------AERPRPPFREAWRQVWASPQARRFFV 215 (403)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccccC---------------------------CCCCCccHHHHHHHHHhCCChhHHHH
Confidence 2223322233333233221100000 00111112234556666777777666
Q ss_pred HHHHHHHHHhhhhHHHHHHH-HHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhh-ccCChhHHHHHHHHHHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYS-TSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMD-RQGRKNLLTFSFTGMAASMLL 421 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~ 421 (543)
..++..+.. +.--..+ |+--+-+|++.... ++...+.+.++|..+.|++.. |.++++...++....++++.+
T Consensus 216 fl~l~t~a~----~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 216 FLFLGTLAF----FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHHH----HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 555544432 2222222 22223356666544 777788888899888888777 677888888888888888777
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 422 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
+....... +.+......++++.+.+........ .+.+..+++..|..+|.....+.+...++..+.|.+.|.
T Consensus 292 ii~a~~~~-----~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 292 IILAGPLG-----SPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHhcc-----cchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653321 2345555555665555543333333 455777778899999999999999999999999988874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=155.39 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=134.9
Q ss_pred hHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHH---HHHhhhHHHHHHHH
Q 009108 126 ALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGR 201 (543)
Q Consensus 126 ~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~r 201 (543)
..|. +.+++|.+..+. ++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...+++++
T Consensus 272 ~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL 349 (490)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4454 456788887766 78888889999999999999999999999988877654443332 22345677888899
Q ss_pred HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
++.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+...+|+..+++..+++++.++..+++
T Consensus 350 ~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 350 LMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99998877777777888899999999999999754444555667777777776543468888777777777766677778
Q ss_pred CCChhHHHhc-----CChHHHHHHHHHHh
Q 009108 282 PESPRWLFQQ-----GKKSEAEKSIQTLY 305 (543)
Q Consensus 282 ~e~~~~~~~~-----~~~~~~~~~~~~~~ 305 (543)
||+|+++.++ ++.+++.+.+.+++
T Consensus 430 pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 430 KETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ccccCCCCCCccccccchhhHHHHhhccc
Confidence 9999987654 66777777777765
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-17 Score=162.07 Aligned_cols=382 Identities=14% Similarity=0.143 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH
Q 009108 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 188 (543)
+++..+......+.+...+..+.+.|+++..+. |++.+.|-++..+..++..++.+|..|-|.+-+|.++++++++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence 344455556777778889999999999999999 999999999999999999999999888889999999999999887
Q ss_pred HHh----h----------------------------------------------hHHHHHHHHHHHhhhccccccchhhh
Q 009108 189 ATA----Q----------------------------------------------SVQTMIIGRVLAGIGIGISSAIVPLY 218 (543)
Q Consensus 189 ~~~----~----------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~ 218 (543)
++- . -+..+++++++.|+|....++...+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 651 0 02447889999999999999999999
Q ss_pred hhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCC---------------------CchHHHHHHhHHHHHHHHHH
Q 009108 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------LWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 219 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~~~~ 277 (543)
+-|..++++-+..+|+..+...+|.++|.++++.+...+ ..|-.-|++.+++.++..+.
T Consensus 166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip 245 (539)
T PF03137_consen 166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP 245 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765310 11555566666666666666
Q ss_pred hcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHH---HhccCCCCcccchhhhhccchhHHHHHHHHHHHHHH
Q 009108 278 MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLT---NAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 354 (543)
Q Consensus 278 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (543)
++++|+.-+...+..+.++..+ ++. ++...+...+.+ ...+..++-....+++++|+.+....++......
T Consensus 246 l~~FPk~lp~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~-- 319 (539)
T PF03137_consen 246 LFFFPKKLPGTSERQEEKESSE--RKE--EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF-- 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCCccCCCcccccchhhhhh--cch--hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH--
Confidence 6666655332100000000000 000 000000000000 0001112223456677777776665555544443
Q ss_pred hhhhHHHHHHHHHHHHH-cCCCchhH--H-HHHHHHHHHHHHHHHHHhhhccC--ChhHHHHHHHHHHHHHHHHHHHHh-
Q 009108 355 LAGINAVVYYSTSVFRS-VGIESDVA--A-SALVGAANVFGTAVASSLMDRQG--RKNLLTFSFTGMAASMLLLSLSFT- 427 (543)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~~~~~--~-~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~- 427 (543)
....+..|.|.+++. ++.++..+ . ..+...+.++|.+++|++.+|++ .|+.+....+...+..+.+...+.
T Consensus 320 --~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~ 397 (539)
T PF03137_consen 320 --IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFL 397 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 366777777777764 56555433 2 22233467789999999999975 344444444443333332111000
Q ss_pred ----------hccc--------------------------------ccc--cchhHH-HHHHHHHHHhhcCccccccccc
Q 009108 428 ----------WKVL--------------------------------APY--SGTLAV-LGTVLYVLSFSLGAGPVPALLL 462 (543)
Q Consensus 428 ----------~~~~--------------------------------~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 462 (543)
.... ... ...... +..++..+.......|... .+
T Consensus 398 ~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~-i~ 476 (539)
T PF03137_consen 398 GCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL-IT 476 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe-ee
Confidence 0000 000 011112 2222222222233344444 45
Q ss_pred ccccChhhhhHHHHHHHHHHHH-HHHHHHHhhHHHHHhhc
Q 009108 463 PEIFASRIRAKAVALSLGMHWI-SNFVIGLYFLSVVNKFG 501 (543)
Q Consensus 463 ~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~~~~~~g 501 (543)
-..+|+++|+.|.|+...+.++ |.+=+|.++|.+.|..-
T Consensus 477 LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 477 LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp ----------------------------------------
T ss_pred eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 5788999999999999987765 56779999999999753
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-15 Score=121.94 Aligned_cols=134 Identities=25% Similarity=0.316 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcc
Q 009108 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (543)
Q Consensus 147 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 226 (543)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 227 IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 227 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
+|++.+++......+|..+++.+.+.+.+. .+|++.|++.++..++..+..+++
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988765 789999999888777665544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=140.62 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=128.7
Q ss_pred hHHHHHHHcCCCc--------chhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh----h
Q 009108 126 ALEYLAKDLGIAE--------NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ----S 193 (543)
Q Consensus 126 ~~~~i~~~~~~s~--------~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~ 193 (543)
..+...++.|.+. +.. +...++..++..++.++.|+++||+|+|+++.++.++.+++..+..... +
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~--g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~ 307 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNA--SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG 307 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 4455455666443 444 8999999999999999999999999999999999999988877666632 3
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHH-HHHHHHHHHHHHhhcccCCCC-----CchHHHHHHh
Q 009108 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-----LWWRTMFGLA 267 (543)
Q Consensus 194 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~-----~~wr~~f~~~ 267 (543)
++.+++.+++.|++.+...+....++.|++|+++|++++++.+ ...++|..+||+++|.+.+.. .||+..|++.
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~ 387 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF 387 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence 4667788999999999888888899999999999999999997 678899999999999887652 4699999988
Q ss_pred HHHHHHHHHHh-cccCCChh
Q 009108 268 AIPSILLALGM-GLSPESPR 286 (543)
Q Consensus 268 ~~~~~~~~~~~-~~~~e~~~ 286 (543)
+++.++..++. ++++|+.+
T Consensus 388 ~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 388 AGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHhCCccc
Confidence 88877655544 44566543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=134.34 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=127.0
Q ss_pred hHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009108 126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (543)
Q Consensus 126 ~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 204 (543)
..| ++++++|.+..+. +++.+...++..++.+++|+++||+|||+.+..+.....+......+.++.+.+++.+++.
T Consensus 238 ~~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 315 (393)
T PRK15011 238 NMPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN 315 (393)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344 5667889988877 8888888888888999999999999999988877766666555556678888888899998
Q ss_pred hhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccCC
Q 009108 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283 (543)
Q Consensus 205 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 283 (543)
+++.+...+....+..|.+|+ +|++++++++....+|..+++.+++.+.+. .+|+..|++.+++.++..+..++.||
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888877777777888899885 599999999999999999999999998876 78999999888888777766666554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=141.65 Aligned_cols=140 Identities=15% Similarity=0.051 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCC
Q 009108 145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP 224 (543)
Q Consensus 145 ~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 224 (543)
+...+..++..++.++.|+++||+|||+++++++++.+++.++.+++++...+++++++.|++.++.++...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556678889999999999999999999999999999999999999988888999999999888888999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccCCChh
Q 009108 225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (543)
Q Consensus 225 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (543)
.++|++++|+..+...+|.+++|++++.+.. .+...+|++.+++.++.+++.+++||+..
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~--~~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVG--ITKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999987764 34567788888777777777777788653
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-14 Score=140.35 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=123.2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcccccc
Q 009108 134 LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSA 213 (543)
Q Consensus 134 ~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 213 (543)
.+.+..+. |++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+
T Consensus 257 ~~~~~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 257 PEQGTRVF--GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred cCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 35555556 9999999999999999999999999999999999999999989999999999999999999999888778
Q ss_pred chhhhhhccCCcccchhhhHH-HHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 214 IVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 214 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
....++.+.+|++.|+...+. ++....+|.++++.+.+++.+. .||+..|++.+++.++..+..+
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-IGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHHHHH
Confidence 888899999999988877655 6677889999999999999876 7899999988887766544433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=135.28 Aligned_cols=354 Identities=17% Similarity=0.157 Sum_probs=203.2
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh---c--ccchhhhhhHHHHHHHHHHHHh----hhH
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF---G--RTRTFQLDAVPLAAGAFLCATA----QSV 194 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~---G--rr~~~~~~~~~~~i~~~~~~~~----~~~ 194 (543)
.+..+.+++++|+++++. ..+.+...+...+ -+++|.++|.+ | ||+.++++.++..++.+.++.. .+.
T Consensus 10 ~~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQL--QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 347788999999999998 8888888887765 67899999976 3 4555666777666655555553 356
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 195 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
....++-++..+|......++-+++.|...+ ++||...+.......+|.+++..++|.+.+. .++++.|.+.+++..
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-FGPQGVFLISAALPL 165 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCeEEehHHHHHHH
Confidence 6677777888889988889999999988743 3367888888888999999999999998876 789999988887776
Q ss_pred HHHHHhcccCCChhHHHhcCChHHH-HHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH-HHHHH
Q 009108 273 LLALGMGLSPESPRWLFQQGKKSEA-EKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV-GAALF 350 (543)
Q Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 350 (543)
+..+..+++.|+.+. ..+.+.... .+....... .. ++....+++.++.+..+...+ ..++.
T Consensus 166 l~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~l~~~~~~~~i~~~~~~~~~~~ 228 (433)
T PF03092_consen 166 LMLIVALFLLEERKV-RPADEVFSFGKEEVPCLFG--SF--------------REQLSELWRALQQRAIWQPILFFIFFF 228 (433)
T ss_pred HHHHHHHHhhhhccc-cccchhhcccccccchhhH--HH--------------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 665554444332110 000000000 000000000 00 001122344555555444333 11111
Q ss_pred HHHHhhhhHH-HHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHH-HHH
Q 009108 351 LFQQLAGINA-VVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLS-LSF 426 (543)
Q Consensus 351 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~ 426 (543)
....... .. ..++........++++... ...+..++.++|..+..+...+..-|+++....++..+..+.-. +..
T Consensus 229 ~~~~~~~-~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~ 307 (433)
T PF03092_consen 229 NLPPSIS-SASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVT 307 (433)
T ss_pred HhccCCC-CccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEE
Confidence 1111000 01 1111111111111333322 33444455566666665555555666666555444333222111 100
Q ss_pred hhcc-c-ccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009108 427 TWKV-L-APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 501 (543)
Q Consensus 427 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g 501 (543)
.++. . -+.. +..+.-..+........+.|... +++++.|+..-|+.+++..++.|+|..++..+...+.+..+
T Consensus 308 ~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~lv-l~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 308 RWNLDLGIPDQ-WFALGDTILEEVIGMIAFMPSLV-LAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred EEeeeeCcCCe-EEEEEhHHHHHHHHHHHHHHHHH-HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0000 0 0111 22222223333333333444444 68899999999999999999999999999999988888766
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.8e-13 Score=128.46 Aligned_cols=357 Identities=16% Similarity=0.144 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHH----HHHHHHHHHhhHhhhhhhcccchhhhhhHH
Q 009108 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSL----LAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (543)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~----~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (543)
+.....+-.+..++......+..+.....++.+.... .+...... .+...+..+..|.++||+|||..+.+....
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~ 101 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence 3444455555555555555556666666665443322 13444444 677788999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhc--cccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009108 181 LAAGAFLCATAQSVQTMIIGRVLAGIGI--GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (543)
Q Consensus 181 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~--g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 258 (543)
..+..++..+.. +|.++ +.|+.. +..+....++++|....++|....|+....+..+..++|.+++.+... .
T Consensus 102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~-~ 175 (463)
T KOG2816|consen 102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF-L 175 (463)
T ss_pred HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-c
Confidence 888888777766 43333 444433 345677888999999999999999999999999999999999998765 7
Q ss_pred chHHHHHHhHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhc-
Q 009108 259 WWRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFS- 336 (543)
Q Consensus 259 ~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 336 (543)
+.-..|++..+..++..+ ...++||+... +.+.+ ....+....... .......+....+
T Consensus 176 ~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~---~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 236 (463)
T KOG2816|consen 176 GIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD---ATLRELTPGSLD-------------SSHVADAFQSLTKV 236 (463)
T ss_pred CchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc---ccccccCCCccc-------------chhhhhhhhhhccc
Confidence 888888888887777555 44556877542 11110 000000000000 0000011111111
Q ss_pred --cchhHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHH-HhhhccCChhHHHH
Q 009108 337 --SRYWKVVSVGAALFLFQQLAGIN-AVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVAS-SLMDRQGRKNLLTF 410 (543)
Q Consensus 337 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~ 410 (543)
.+....+.+...+.......... ...+|+. ..++++.... ..........++.++.. .+...++.|+.+..
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~---~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLK---AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEe---eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 11111111111111111111111 1111111 2245655544 45555666777776665 77778898888888
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHH
Q 009108 411 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 490 (543)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 490 (543)
+.....+..+..++.. ..|...... .+ ..+.....+...+.+....+++.+|++.++...+..+.+.++|
T Consensus 314 Gl~~~~~~~~~~af~~--------~~w~~~~~~-v~-~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFAT--------ETWMMFAAG-VV-VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred HHHHHHHHHHHHHHhc--------cchhhhHHH-HH-HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence 8888888888888752 222222222 22 2223344556666788888899999999999999999999999
Q ss_pred HhhHHHHHhh
Q 009108 491 LYFLSVVNKF 500 (543)
Q Consensus 491 ~~~g~~~~~~ 500 (543)
.+.+.++..+
T Consensus 384 ~~~~~i~~~t 393 (463)
T KOG2816|consen 384 ALYGNIFALT 393 (463)
T ss_pred HHHHHHHHHH
Confidence 9999887543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=134.15 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=130.7
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 205 (543)
..|.+.++.|.+..+. +++.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+.-++.|
T Consensus 242 ~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 242 WLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4677778889988888 99999999999999999999999999999998877777777777777888888888888899
Q ss_pred hhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 206 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+++.+.+...+|...+++.....++..+..+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9888788888899999999999999999999999999999999999988765567777776666665555544443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=132.50 Aligned_cols=146 Identities=15% Similarity=0.041 Sum_probs=125.5
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhH--HHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVL 203 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l 203 (543)
..+.+.++++.+..+. +++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++. ..+++..++
T Consensus 227 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 4455667888887777 999999999999999999999999999999999999998888887777643 334566788
Q ss_pred HhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHH
Q 009108 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL 274 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 274 (543)
.|++.+...+....++.|.+|+++|+++.|+......+|..++|.+.+.+.+. .||++.|++.+++.++.
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-IGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHh
Confidence 88888888888888999999999999999999999999999999999998866 78999998888776654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-13 Score=131.04 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=128.3
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 205 (543)
..+.+.++.|. +.. ++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|
T Consensus 238 ~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 238 FITLYYAARGW--DGA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHccc--ccc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444455565 334 67778889999999999999999999999999999988888888888889888889999999
Q ss_pred hhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccCC
Q 009108 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283 (543)
Q Consensus 206 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 283 (543)
++.+..++.....+.|.+|+++|++++++++....+|..+++.+.+.+.+. .||++.|++.++..++..+..+++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-FGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999988888888888999999999999999999999998888888888765 78999999988877776665555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=127.02 Aligned_cols=163 Identities=24% Similarity=0.347 Sum_probs=143.3
Q ss_pred HHHHHHHHhhhhHHHHHHHc-CCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccc-hhhhhhHHHHHHHHHHHHhh
Q 009108 115 LFGYHLGVVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATAQ 192 (543)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~-~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~ 192 (543)
.............|.+.++. |.+..+. ++..+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444445566665554 8888887 99999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 193 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
+.+.+++..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+.+. .+|++.+++.+++.+
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~~~~~~~~~~~~ 342 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALAL 342 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998865 799999999999888
Q ss_pred HHHHHhcc
Q 009108 273 LLALGMGL 280 (543)
Q Consensus 273 ~~~~~~~~ 280 (543)
+..+..++
T Consensus 343 i~~i~~~~ 350 (352)
T cd06174 343 LAALLLLL 350 (352)
T ss_pred HHHHHhee
Confidence 77666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=126.44 Aligned_cols=151 Identities=22% Similarity=0.240 Sum_probs=126.9
Q ss_pred HHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 009108 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (543)
Q Consensus 128 ~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 207 (543)
.++.+++|.++.+. +++.+.......++.++.|++.||+|||+++.++.++..+...+..+.++.+.+++.+++.|++
T Consensus 224 ~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 301 (375)
T TIGR00899 224 LLIIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF 301 (375)
T ss_pred HHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567889988887 8888888777788899999999999999999888777666666666778888888899999999
Q ss_pred ccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccC
Q 009108 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282 (543)
Q Consensus 208 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 282 (543)
.+...+....++.|..|++ +++++++++....+|..++|.+++.+.+. .||+..|++.++..++..+...+++
T Consensus 302 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 302 IGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER-WSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHheec
Confidence 8888888888889988764 67999999999999999999999988765 7899999998888777666655544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=113.83 Aligned_cols=257 Identities=18% Similarity=0.134 Sum_probs=158.6
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 203 (543)
+|..-.+-+++|.++.++ +.+...-+....+..++.|.++||+|||+.-+..+++.+++++ +-..++++.++++|++
T Consensus 54 GpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL 130 (354)
T ss_pred cchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence 444445557899999999 9999999999999999999999999999999999999998885 4556899999999999
Q ss_pred Hhhhccccccchhhhh-hcc----CCcccchhhhHHHH-HHHHHHHHHHHHhhcccCCC-CCchHHHHHHhHHHHHHHHH
Q 009108 204 AGIGIGISSAIVPLYI-SEI----SPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLAL 276 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~-~~~wr~~f~~~~~~~~~~~~ 276 (543)
.|++.+..+.+--+++ .|+ +|++..+..++... ...++-.+++.+++.++.+. ..|-..+|....++.++..+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999888877664 443 22232233333222 22233344445555554432 12347788777766666555
Q ss_pred Hhc-ccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHh
Q 009108 277 GMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355 (543)
Q Consensus 277 ~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 355 (543)
++. ..+|+.... .+..+..+..+ ..++.++++++.. +......+...
T Consensus 211 ~I~~~W~ENyg~~---~~~~~~~~~~~--------------------------~a~~~i~~d~ril---~LG~~qslFE~ 258 (354)
T PF05631_consen 211 LILKTWPENYGDT---SSSSSLSGSFR--------------------------EAWRAILSDPRIL---LLGLIQSLFEG 258 (354)
T ss_pred HHHhcccccCCCc---ccccchHHHHH--------------------------HHHHHHHcCchhH---HHHHHHHHHHH
Confidence 443 346654310 01111111000 1122334444433 33344445555
Q ss_pred hhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHHHH
Q 009108 356 AGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFTGM 415 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~ 415 (543)
..+..+..|.|.+..+...-+.+.++..+.++.++|+.+..++..+ ......+...+.+.
T Consensus 259 smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~a 319 (354)
T PF05631_consen 259 SMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVA 319 (354)
T ss_pred HHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6677777778877532222344666777778888888888665544 33334343333333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=126.27 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=127.2
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 205 (543)
..+...++.+.+ +. ++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|
T Consensus 238 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 238 FVSLYFASKGWA--MA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHHhcCCc--hh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444444556654 34 66777888888999999999999999999999999999998888888888888889999999
Q ss_pred hhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 206 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
++.+...+.....+.|.+++++|++++++++....+|..++|.+.+.+.+. .||++.|++.++..++..+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHH
Confidence 999988888888889999999999999999999999999999999998876 7899999998887776555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=124.77 Aligned_cols=147 Identities=11% Similarity=0.003 Sum_probs=129.5
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 205 (543)
..|...+++|.+..+. |++.+...++..++.++.+++.||+|+|+.+.++.+..++..++.+++++.+.+++.+++.|
T Consensus 227 ~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 227 FSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 4455556799999888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccchhhhhhccCCcccchhhhHHHH-HHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 206 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
+..+...+....++.+. |+++|+++.++++ ...++|..+++.++|++.+. .|+ ..|++.++++++..++
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-LGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHHH
Confidence 99999999999999998 9888999999986 57789999999999999977 576 5677777766654443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-12 Score=126.17 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=116.1
Q ss_pred hhhHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHH--HHHhhhHHHHHHH
Q 009108 124 NGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL--CATAQSVQTMIIG 200 (543)
Q Consensus 124 ~~~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~ 200 (543)
....| ++++++|.+..+. ++..+.+.++..++.+++|+++||+|||+.++....+..++..+ ....++.+.+.++
T Consensus 278 ~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T PRK09556 278 DNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLAS 355 (467)
T ss_pred HHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33455 5667899998888 99999999999999999999999999998876655444443322 2334567677788
Q ss_pred HHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHH-HHHHHHHhhcccCCC-----------CCchHHHHHHhH
Q 009108 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGN-----------PLWWRTMFGLAA 268 (543)
Q Consensus 201 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~-----------~~~wr~~f~~~~ 268 (543)
+++.|++.............|.+|+++|+.+.|+.+....+ |..++|.+.|.+.+. ..+|+..|++.+
T Consensus 356 ~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~ 435 (467)
T PRK09556 356 LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD 435 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence 88888654433333345677999999999999999988886 778889888888871 267999998887
Q ss_pred HHHHHHHHHhc
Q 009108 269 IPSILLALGMG 279 (543)
Q Consensus 269 ~~~~~~~~~~~ 279 (543)
+..++..+..+
T Consensus 436 ~~~~~~~~~~~ 446 (467)
T PRK09556 436 IAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHH
Confidence 77766554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-12 Score=116.95 Aligned_cols=172 Identities=20% Similarity=0.140 Sum_probs=141.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 009108 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLL 422 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 422 (543)
+...+..+......+...-.+|.+.++++.+.... ....+..+..++.++...+.||+.||++++....+..++.++.
T Consensus 16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~ 95 (394)
T COG2814 16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS 95 (394)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence 33344444444557777888899999999988755 6777889999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 009108 423 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGI 502 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~ 502 (543)
.+.. +....+++-++.+...+ .++++...+..++.|+++|+++++++.+...++..+|.++..++-|.+||
T Consensus 96 alAp--------~f~~Ll~aR~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 96 ALAP--------SFAVLLLARALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHhc--------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 8862 22344444444444443 34566777899999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHhhheecc
Q 009108 503 STVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
+.+|++.+++.++..+..+..+|
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999888888888
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=129.55 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=123.5
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh--cccchhhh--hhHHHHHHHHHHHHhhhHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQL--DAVPLAAGAFLCATAQSVQTMIIGR 201 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~r 201 (543)
.+|.+.+++|.+..+. +++.++..++..+++++.|+++||. ++|+...+ +.++.+++.+++.+.++++.+++.+
T Consensus 263 ~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4566667789988888 9999999999999999999999984 34433333 3344455556667788999999999
Q ss_pred HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHH
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 276 (543)
++.|++.+...+...+++.|.+|++++++++++++....+|..+||.+++.+.+...+|++.|++.+++.++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999998889999999999999999999999999999999999999999987645799999998887665544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=127.78 Aligned_cols=156 Identities=20% Similarity=0.173 Sum_probs=128.4
Q ss_pred hhhhHHHHHHHcCCCcchh--hHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHH
Q 009108 123 VNGALEYLAKDLGIAENTV--LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG 200 (543)
Q Consensus 123 ~~~~~~~i~~~~~~s~~~~--~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 200 (543)
..+..+...++.+.+..+. ..+.+.+++.++..++.+++|+++||+|||+.+..+.++..++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3445555545443332221 23667777888888999999999999999999999998888888888888889999999
Q ss_pred HHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 201 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
+++.|++.+...+.....+.+..++++|++.+++......+|..+||.+++.+.+. .+|++.|++.+++.++..+..+
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-YGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999898888889999999999999999999999999999999998866 7899999999888877665543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-12 Score=123.48 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=111.0
Q ss_pred HhhhhHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhh-hhhHHH-------HHHHHHHHHhh
Q 009108 122 VVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPL-------AAGAFLCATAQ 192 (543)
Q Consensus 122 ~~~~~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~-------~i~~~~~~~~~ 192 (543)
......| ++.+++|.+..+. +++.+...++..++.++.|+++||+|||+... ...... .+........+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (399)
T TIGR00893 233 FFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN 310 (399)
T ss_pred HHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence 3344445 4556788888887 99999999999999999999999999996211 111111 11111112223
Q ss_pred hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc-hHHHHHHhHHHH
Q 009108 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPS 271 (543)
Q Consensus 193 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-wr~~f~~~~~~~ 271 (543)
+.+..+...++.+.+.+ ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+. .+ |++.|++.++..
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~ 388 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-TGSFAGALMVVAALA 388 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC-CCchhHHHHHHHHHH
Confidence 44444444455555544 7888999999999999999999999999999999999999999876 56 999998888777
Q ss_pred HHHHHHh
Q 009108 272 ILLALGM 278 (543)
Q Consensus 272 ~~~~~~~ 278 (543)
++..+..
T Consensus 389 ~~~~~~~ 395 (399)
T TIGR00893 389 LIGALSY 395 (399)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=120.60 Aligned_cols=176 Identities=11% Similarity=-0.004 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 009108 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLL 421 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 421 (543)
.+..++.++..+.-...+.+..+.+.++++.+.... ......++..++.++.|++.||+|||+.+..+.++..++.++
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 89 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTA 89 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 333333444444445566666777778888877755 556677888899999999999999999999998888888877
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH---
Q 009108 422 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN--- 498 (543)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~--- 498 (543)
..+.. +.....+.-++.+.+.+. ..+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+
T Consensus 90 ~~~~~--------~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 90 TMFAT--------GPESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHhc--------CHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 76641 223334444444444432 345555678999999999999999999999999999999998875
Q ss_pred ---hhccccchhhhhHHHHHHHHhhheecccCC
Q 009108 499 ---KFGISTVYLGFATVCLLAVLYIAVNVVETK 528 (543)
Q Consensus 499 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (543)
..||+..|.+.++..++..++.+++.+|++
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 358999999988777766666666666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=119.90 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=111.2
Q ss_pred hHHHHHHH-HHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 358 INAVVYYS-TSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 358 ~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
......+. +++.+++|.+.... ......++.+++.++.|+++||+|||+.+..+.++..++.+++.+..
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~-------- 94 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN-------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--------
Confidence 33334344 44445678877654 55556678888999999999999999999888877777766665531
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHH
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCL 514 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 514 (543)
+.+..++...+.+.+.. ...+....+..|..|++.|+++.|+.+...++|.+++|.+.+.+.+ .||+..|.+.+++.+
T Consensus 95 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 95 NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA 172 (395)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence 11222222223332222 2344556677899999999999999999999999999999998875 689999988877777
Q ss_pred HHHHhhheeccc
Q 009108 515 LAVLYIAVNVVE 526 (543)
Q Consensus 515 ~~~~~~~~~~~~ 526 (543)
+..++..+..++
T Consensus 173 i~~i~~~~~~~~ 184 (395)
T PRK10054 173 FPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHhc
Confidence 665544443433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=121.50 Aligned_cols=163 Identities=22% Similarity=0.199 Sum_probs=120.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 356 AGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
........+.|.+.++++.+.... ......++.+++.++.|+++||+|||+.+..+..+..++.+++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-------- 102 (398)
T TIGR00895 31 YDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-------- 102 (398)
T ss_pred HHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--------
Confidence 334556667788888888876644 5556678889999999999999999999998888777777666543
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHH
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 513 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 513 (543)
.+.+..++..++.+.+.+ ...+....++.|.+|++.|++++++.+....+|..+++.+.+.+.+..||+..+.+.+++.
T Consensus 103 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 181 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181 (398)
T ss_pred cchHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence 122233333333333333 3445666688999999999999999999999999999999999999999999988887666
Q ss_pred HHHHHhhheecccC
Q 009108 514 LLAVLYIAVNVVET 527 (543)
Q Consensus 514 ~~~~~~~~~~~~~~ 527 (543)
++..++.+.+.+++
T Consensus 182 ~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 182 LLLLLLLMRFLPES 195 (398)
T ss_pred HHHHHHHHHhCCCC
Confidence 65555555555544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=118.91 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=118.5
Q ss_pred HHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhH
Q 009108 362 VYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLA 439 (543)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (543)
....|.+.++++.++... ......++..++.++.|++.||+|||+.+..+..+.+++.++..+.. +.+..
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--------~~~~l 111 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN--------SFSLL 111 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC--------hHHHH
Confidence 334666778888877644 44566788888999999999999999999999999888777765531 22333
Q ss_pred HHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHh
Q 009108 440 VLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLY 519 (543)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 519 (543)
++.-.+.+.+.+. ..+....++.|.+|+++|+.++++.....+++..++|.+.+.+.+..||+..|++.+++.+++.+.
T Consensus 112 ~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 112 LIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 345566678899999999999999999999999999999999999999999998887776665544
Q ss_pred hheecccC
Q 009108 520 IAVNVVET 527 (543)
Q Consensus 520 ~~~~~~~~ 527 (543)
.....|+.
T Consensus 191 ~~~~~p~~ 198 (394)
T PRK10213 191 IIKSLPSL 198 (394)
T ss_pred HHHHCCCC
Confidence 44334543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=123.91 Aligned_cols=157 Identities=18% Similarity=0.113 Sum_probs=115.1
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH---h-hhHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---A-QSVQTMIIGR 201 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~l~~~r 201 (543)
..+++.+++|.+.... ..+..+..+...++.+++|+++||+|||++++.+.++..++.+.+.. . ++.+.+++..
T Consensus 273 ~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T PRK09952 273 ALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSI 350 (438)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3345667788887655 55566666777888899999999999999988887766555433322 2 2344445566
Q ss_pred HHHhhhccccccchhhhhhccCCcccchhhhHHHH-HHHHHHHHHHHHhhcccCCCC-CchHHHHHHhHHHHHHHHHHhc
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-LWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
++.|++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+.. .+|+..+...++..++..+..+
T Consensus 351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 77788888778888899999999999988888854 445588889999998886632 4588888887777777666655
Q ss_pred ccCCC
Q 009108 280 LSPES 284 (543)
Q Consensus 280 ~~~e~ 284 (543)
.++|+
T Consensus 431 ~~~~~ 435 (438)
T PRK09952 431 LMKDN 435 (438)
T ss_pred Hcccc
Confidence 55553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=120.92 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=120.9
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH-HHHHHhhhHHHHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA-FLCATAQSVQTMIIGRVLA 204 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~ 204 (543)
..|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||++. .+..+..++. .+....++.+.++++.++.
T Consensus 228 ~~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 228 IEPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 4556667789988888 9999999999999999999999999988754 4444444443 3345567888888899999
Q ss_pred hhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 205 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
|++.+...+.....+.+..| ++|+++++++.....+|..+||++++.+.+. .|++..|++.+++.++..+...
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-LGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHH
Confidence 99987777777778888776 5789999999999999999999999999877 8999999999888776555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-12 Score=122.55 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=126.2
Q ss_pred hhHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 009108 125 GALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (543)
Q Consensus 125 ~~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 203 (543)
...| ++.+++|.+..+. +++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++
T Consensus 226 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG 303 (394)
T ss_pred HHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 3445 4457789998888 999999999999999999999999999999988888777777777777888777778889
Q ss_pred HhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
.|++.+..++...++..+..+. ++++..+.......+|..++|.+.+++.+. .||+..+++.+++.++..+....+
T Consensus 304 ~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 304 LGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAH-FGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hCchhhhhhhHHHHHHHHHHHHHH
Confidence 9998888888877777777764 467888888888899999999999999876 789999998888777665554444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=119.53 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=121.7
Q ss_pred hhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh-hHHHHHHHHHH
Q 009108 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVL 203 (543)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l 203 (543)
...|.+.+++|.+..+. |+..+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++
T Consensus 226 ~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l 301 (393)
T PRK09705 226 AWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMV 301 (393)
T ss_pred HHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHH
Confidence 34555556789998888 9999999999999999999999999999999888877777766554333 22222 2346
Q ss_pred HhhhccccccchhhhhhccCC-cccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH-hccc
Q 009108 204 AGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLS 281 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~ 281 (543)
.|++.+...+.......+.++ +++|++.+++.+....++..++|.+.+++.+...+|...|++.++..++..+. ..+.
T Consensus 302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 688888777877767777775 57789999999999999999999999999877456888888887777665544 3444
Q ss_pred CCChh
Q 009108 282 PESPR 286 (543)
Q Consensus 282 ~e~~~ 286 (543)
||++.
T Consensus 382 ~~~~~ 386 (393)
T PRK09705 382 PARFP 386 (393)
T ss_pred ccccc
Confidence 66654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=121.17 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=122.7
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 205 (543)
.+|.+.++.|.+.++. +++.+.+.++..+++++.|++.||+|+|+++..+..+.+++.+... . ...+....++.|
T Consensus 222 ~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 222 LMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 4676777788888877 9999999999999999999999999999999888888777665443 2 234456778888
Q ss_pred hhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcc
Q 009108 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (543)
Q Consensus 206 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 280 (543)
++.....|...+.+.|..|+++++.+.+......++|..+||.+++++.++ .+|++.|.+.+.+.++..+..++
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-YSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHh
Confidence 887778888999999999988888888888888999999999999999876 78999999888877766555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=119.69 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
........|.+.++++.+.... ......++..++.++.|++.||+|||+.+..+..+..++.+.+.... +
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--------~ 92 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN--------N 92 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--------c
Confidence 3444445677778888876644 56667788899999999999999999999998888888777766531 2
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHH
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLL 515 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 515 (543)
.+...+..++.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.+++.++
T Consensus 93 ~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 93 IETLLVLRFVQAFGAS-AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred HHHHHHHHHHHHcchh-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 2223333333333332 233455568889999999999999999999999999999999999999999999888877777
Q ss_pred HHHhhheecccCC
Q 009108 516 AVLYIAVNVVETK 528 (543)
Q Consensus 516 ~~~~~~~~~~~~~ 528 (543)
..++.++..||++
T Consensus 172 ~~~~~~~~~~~~~ 184 (385)
T TIGR00710 172 LSALIFFILPETL 184 (385)
T ss_pred HHHHHHHhCCCCC
Confidence 6666555555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-12 Score=124.74 Aligned_cols=147 Identities=19% Similarity=0.108 Sum_probs=114.5
Q ss_pred hhhHHHH-HHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH--HHHHH--hhhHHHHH
Q 009108 124 NGALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA--FLCAT--AQSVQTMI 198 (543)
Q Consensus 124 ~~~~~~i-~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~--~~~~~~l~ 198 (543)
....|.+ ++++|.+..+. +++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.++
T Consensus 239 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
T TIGR00883 239 TTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFF 316 (394)
T ss_pred HHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445544 47788888887 999999999999999999999999999998776555444433 22222 25677777
Q ss_pred HHHHHHhhhccccccchhhhhhccCCcccchhhhHH-HHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 199 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
+..++.|++.+...+...+++.|.+|+++|++++++ ...+..+|..++|.+++++.+....|++.++...+..+
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 317 FLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 888999999888899999999999999999999998 45666788889999999988763338887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=119.86 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009108 359 NAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSG 436 (543)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (543)
.....+.+.+.++++.+.... ......++..++.++.|++.||+|+|+.+..+.++..++.+++.+.. +.
T Consensus 40 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~~ 111 (434)
T PRK11663 40 KSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--------SL 111 (434)
T ss_pred hhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh--------HH
Confidence 355667788888888887654 55667788899999999999999999999999888888877666531 11
Q ss_pred hhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHH
Q 009108 437 TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLA 516 (543)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 516 (543)
+...+..++.+.+.+. ..+....++.|.+|+++|++++++.+...++|..++|.+.+.+.+..||+..|.+.+++.++.
T Consensus 112 ~~l~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 112 WAFALLWVLNAFFQGW-GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHc-cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 2222222333333333 234555688899999999999999999999999999999999999999999998887766555
Q ss_pred HHhhheecc
Q 009108 517 VLYIAVNVV 525 (543)
Q Consensus 517 ~~~~~~~~~ 525 (543)
.++..+..+
T Consensus 191 ~~~~~~~~~ 199 (434)
T PRK11663 191 GLFLCWRLR 199 (434)
T ss_pred HHHHHHHcC
Confidence 443333333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-12 Score=124.60 Aligned_cols=138 Identities=25% Similarity=0.236 Sum_probs=114.1
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH-HHHHhhhHHHHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF-LCATAQSVQTMIIGRVLA 204 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l~ 204 (543)
..+++.+++|.+..+. +++.+.+.++..++.++.|++.||+|||+.+..+.++.++..+ +....++.+.+.+..++.
T Consensus 261 ~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (405)
T TIGR00891 261 LPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQ 338 (405)
T ss_pred hHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3445667789998888 9999999999999999999999999999998888776543332 334456777777777888
Q ss_pred hhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCc-hHHHHHH
Q 009108 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGL 266 (543)
Q Consensus 205 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-wr~~f~~ 266 (543)
|++.+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.+. .| |+..+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~g~~~~~~~~ 400 (405)
T TIGR00891 339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-LDEYGTALAS 400 (405)
T ss_pred HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHh
Confidence 8777777788888999999999999999999999999999999999999876 55 7766654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=124.69 Aligned_cols=161 Identities=13% Similarity=0.024 Sum_probs=124.0
Q ss_pred HhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh-----h----
Q 009108 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----Q---- 192 (543)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~---- 192 (543)
......|.+.+++|.+..+. ++....+.++..++.+++|+++||+|||+.+.++.++.+++.++.++. +
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379 (481)
T ss_pred ehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 33446688888999988777 899999999999999999999999999999999988888877766621 1
Q ss_pred --hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHH
Q 009108 193 --SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (543)
Q Consensus 193 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~ 270 (543)
+...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+. .+|++.|++.+++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-~~~~~~f~~~~~~ 458 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES-IGVGGVFIFFGGL 458 (481)
T ss_pred chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccceehhHHHH
Confidence 2333333333333333334466677889999999999999999999999999999998888765 7899999998888
Q ss_pred HHHHHHHhc-ccCCCh
Q 009108 271 SILLALGMG-LSPESP 285 (543)
Q Consensus 271 ~~~~~~~~~-~~~e~~ 285 (543)
+++.++..+ +.||++
T Consensus 459 ~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 459 NVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHheecccCC
Confidence 777665544 446543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=124.05 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 356 AGINAVVYYSTSVFRSVGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
..........|.+.++++.+... .......++.+++.++.|++.||+|||+.+..+..+..++.+++...
T Consensus 16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 87 (485)
T TIGR00711 16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-------- 87 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--------
Confidence 33556667788888888877653 36677788999999999999999999999999988888887776543
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHH
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 513 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 513 (543)
.+....++..++.+.+.+ ...+....++.|.+|++.|+++.++......+|..++|.+.+.+.++.||++.|++.+.+.
T Consensus 88 ~~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~ 166 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG 166 (485)
T ss_pred CCHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHH
Confidence 122333333333333332 3445666688999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHhhheecccC
Q 009108 514 LLAVLYIAVNVVET 527 (543)
Q Consensus 514 ~~~~~~~~~~~~~~ 527 (543)
++..++..+..+++
T Consensus 167 ~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 167 IIVVVVAFFILPRD 180 (485)
T ss_pred HHHHHHHHHHcCCc
Confidence 66665555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=121.38 Aligned_cols=175 Identities=14% Similarity=0.034 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 009108 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV--AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLL 421 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 421 (543)
+....+..+....-.+.+..-.|.+.++++.+... .....+.++...+.+..|+++||+|||+.+..+..+..++.++
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33344444444444566677788888888876543 3556667777888899999999999999999999998888888
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccc-cChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 009108 422 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEI-FASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF 500 (543)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~ 500 (543)
+.+. .+.+..++.-.+.+.+.+. ..+.....+.+. .|+++|++++|+......+|..++|.+.|.+.++.
T Consensus 88 ~~~a--------~~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 88 AAFS--------PTASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred HHHc--------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7764 1233344444445544443 333333344444 47789999999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHhhheecccC
Q 009108 501 GISTVYLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 501 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
||++.|++...+.++..++.+++.|+.
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999988877777666655555554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=117.78 Aligned_cols=164 Identities=21% Similarity=0.200 Sum_probs=120.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 356 AGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
.+........|.+.++.+.+.... ......++..++.++.|+++||+|||+.+..+..+..++.+++....
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~------- 89 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE------- 89 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC-------
Confidence 334455567788888888877644 55566778888999999999999999999998888877777665431
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHH
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 513 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 513 (543)
+.+...+..++.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+.+.+++.
T Consensus 90 -~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~ 167 (392)
T PRK10473 90 -TSSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG 167 (392)
T ss_pred -cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 12222333333333322 2234455688899999999999999999999999999999998888889999888888777
Q ss_pred HHHHHhhheecccCC
Q 009108 514 LLAVLYIAVNVVETK 528 (543)
Q Consensus 514 ~~~~~~~~~~~~~~~ 528 (543)
++..++.....+|++
T Consensus 168 ~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 168 ILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHcCCCC
Confidence 776665555555543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=109.38 Aligned_cols=366 Identities=14% Similarity=0.084 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHH
Q 009108 105 FVGVACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (543)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 183 (543)
...++|+..|...+-- .-+.+.|++.+. .|++.+++. .-+.-...-.+....++...+.|..|.|++++++.+...+
T Consensus 6 ~~~llc~~gf~~~frP-sEPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 6 ITLLLCLFGFFKEFRP-SEPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII 83 (412)
T ss_pred HHHHHHHHHHHHhcCC-CCccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444455555543311 123355566654 788877762 4566666777778889999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC-CCCchHH
Q 009108 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-NPLWWRT 262 (543)
Q Consensus 184 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~~wr~ 262 (543)
...+.-+.++...+-+..++-|++.+. ..+-.+++-...++++-.++.+...+...+|..++.++|-.+.. .....+.
T Consensus 84 t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~ 162 (412)
T PF01770_consen 84 TWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ 162 (412)
T ss_pred HHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999999999874 67777888888898888899999888888888888887766654 2356777
Q ss_pred HHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHH-HHhCchhhHHHHHHHHH-hccCCCCccc-------chhh
Q 009108 263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQ-TLYGKERVSEVMLDLTN-AGQGSAEPEA-------GWFD 333 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~ 333 (543)
.+++......+.++..+++|..++...-+++.....+..+ +....++..+...+.++ ....+...+. .+++
T Consensus 163 L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 242 (412)
T PF01770_consen 163 LNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKS 242 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHH
Confidence 7777766666666677777766543222211111000000 00000000000000000 0000001111 1223
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC-Cch----hHHHHHHHHHHHHHHHHHHHhhhccCChhHH
Q 009108 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGI-ESD----VAASALVGAANVFGTAVASSLMDRQGRKNLL 408 (543)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 408 (543)
..+++... -..+++....+++..+..|...+.++... +.. +..-....+.+.++.+..|++..++.+..-+
T Consensus 243 ~y~~~~ll----~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l 318 (412)
T PF01770_consen 243 CYSNPRLL----LWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGEL 318 (412)
T ss_pred HhcCchHH----HHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHH
Confidence 33333322 22344445555677888888877777611 111 2344445566677788888886666554434
Q ss_pred HHHHHHH--HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHH
Q 009108 409 TFSFTGM--AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN 486 (543)
Q Consensus 409 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 486 (543)
..+..-. +..++++... .+.+......+++...+..... +...-++.....+.-|..+|+.+++..+-.
T Consensus 319 ~l~~~S~l~a~~L~lm~~t--------~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 319 ALGVFSLLQAGLLFLMSFT--------GNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 3333322 2223333222 1334444444555555443222 222233333444555666666655444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=119.98 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=132.4
Q ss_pred hhHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 009108 125 GALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (543)
Q Consensus 125 ~~~~~i~~~-~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 203 (543)
...|.+.++ +|.+.... |++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++.++.++.+.+.++.++
T Consensus 244 ~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 244 VLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 345655555 89988888 999999999999999999999999888888888888888888888888888888889999
Q ss_pred HhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHH-HHhcccC
Q 009108 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA-LGMGLSP 282 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~ 282 (543)
.|++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+.+. .|++..+++.++..++.. +....++
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-MTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99998877777788999999999999999999999999999999999999876 788888887776665544 3444445
Q ss_pred CCh
Q 009108 283 ESP 285 (543)
Q Consensus 283 e~~ 285 (543)
|.+
T Consensus 401 ~~~ 403 (417)
T PRK10489 401 ELR 403 (417)
T ss_pred ccc
Confidence 543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=115.51 Aligned_cols=157 Identities=12% Similarity=0.062 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
......+.+.+.++++.+.... ......++..++.++.|+++||+|||+.+..+.++.+++.++..+.. +
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--------s 123 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS--------S 123 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc--------C
Confidence 3445556777788888877654 44556677888999999999999999999888877777766665531 1
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH---------hhccccch
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN---------KFGISTVY 506 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~---------~~g~~~~~ 506 (543)
....++..++.+.+.+ ...+ ...++.|.+|+++||.++|+.+...++|+.+++.+.+.+.. ..||+..|
T Consensus 124 ~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f 201 (476)
T PLN00028 124 ATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF 201 (476)
T ss_pred HHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 2222333333343333 2222 23367899999999999999998888888888776655432 14799999
Q ss_pred hhhhHHHHHHHHhhheec
Q 009108 507 LGFATVCLLAVLYIAVNV 524 (543)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~ 524 (543)
.+.+++.++..++.+++.
T Consensus 202 ~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 202 FVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 988888776665555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-11 Score=115.90 Aligned_cols=155 Identities=16% Similarity=0.110 Sum_probs=114.7
Q ss_pred HHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHH
Q 009108 365 STSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLG 442 (543)
Q Consensus 365 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (543)
+|.+.++++.+.... ....+.++..++.++.|+++||+|||+.+..+..+..++.++.... .+....++.
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--------~~~~~l~~~ 110 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--------TSMTQFLIA 110 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHH
Confidence 445556677766544 5566678888999999999999999999999888877777766553 122333444
Q ss_pred HHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhhe
Q 009108 443 TVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
-++.+.+.+ ...+....++.|.+|++++++++++.+....++..++|.+.+.+.+..||+..|++.+++.++..+..++
T Consensus 111 r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 111 RFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 2233445578899999999999999999999999999999999988889999999988887777665555
Q ss_pred ecccCC
Q 009108 523 NVVETK 528 (543)
Q Consensus 523 ~~~~~~ 528 (543)
..||++
T Consensus 190 ~lp~~~ 195 (413)
T PRK15403 190 AMPETV 195 (413)
T ss_pred hCCCCc
Confidence 556543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-11 Score=116.10 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=117.9
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhh-hhhHHHHHHHHHHHH-----hhhHHHH
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT-----AQSVQTM 197 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~-----~~~~~~l 197 (543)
....|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++.+.+
T Consensus 242 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 345677778899998887 89999999999999999999999999988764 333444444333332 2466777
Q ss_pred HHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 198 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
++..++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+. .||+..|++.++..++..+.
T Consensus 320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 320 LIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-FGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH
Confidence 7888899988876544 4456677655 5799999999999999999999999999876 78999999998887766555
Q ss_pred hcc
Q 009108 278 MGL 280 (543)
Q Consensus 278 ~~~ 280 (543)
..+
T Consensus 397 ~~~ 399 (402)
T TIGR00897 397 TAF 399 (402)
T ss_pred HHH
Confidence 444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=122.08 Aligned_cols=145 Identities=20% Similarity=0.100 Sum_probs=113.9
Q ss_pred hhHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh--hhHHHHHHHH
Q 009108 125 GALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGR 201 (543)
Q Consensus 125 ~~~~~i~-~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r 201 (543)
..+|.+. +++|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.++..+..++.... .+.+.+.+..
T Consensus 296 ~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3556555 6899998888 999999999999999999999999999999888877766665544333 3444454555
Q ss_pred HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
++.++......+....++.|.+|+++|++++++......+|..+||++++.+.+. .||+..+.+.+....
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-~g~~~~~~~~~~~~~ 443 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-LDLGTALASLSFSLT 443 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHH
Confidence 5554444445566778899999999999999999999999999999999999876 789988866554443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=112.07 Aligned_cols=177 Identities=12% Similarity=0.048 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 419 (543)
.++++.++.....+..--.+..-.|.+.++.+++..+. +.+...+..-++.++.|.++||.+.|..+..++++.++..
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 33444444444444445556666788888877877755 6677788899999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhh--HHHH
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYF--LSVV 497 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g~~~ 497 (543)
+++.+.. +.....+...+-+.+.+.++.|..- .+..-+|+++||+..++.|+..|+|+.+.|++. +.+.
T Consensus 109 il~Gfs~--------s~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 109 ILFGFSP--------SLFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHhhhh--------HHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 9998752 2233344445555556666666655 778999999999999999999999999999999 8999
Q ss_pred HhhccccchhhhhHHHHHHHHhhheecccC
Q 009108 498 NKFGISTVYLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 498 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
++.+|+..|++-++++++..++.++..+++
T Consensus 180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 180 FHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999988888777766654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=117.44 Aligned_cols=159 Identities=18% Similarity=0.076 Sum_probs=117.5
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh--hH-H-HHHH
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SV-Q-TMII 199 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~-~-~l~~ 199 (543)
....|.+.+++|.+.... .+......+...++.++.|+++||+|||++++.+.++.+++.++++... +. + ....
T Consensus 291 ~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 345688888899887766 6777778888899999999999999999999999999998887766432 21 1 2223
Q ss_pred HHHHHhhhccc-cccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhc------ccCCCCCchHHHHHHhHHHHH
Q 009108 200 GRVLAGIGIGI-SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL------PLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 200 ~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~------~l~~~~~~wr~~f~~~~~~~~ 272 (543)
+.++.+++.+. ..+....++.|.+|+++|++++++......+|.++++.+.+ ++.+. .+|++.|++.+++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~ 447 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH-FHNGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh-ccCccHHHHHHHHHH
Confidence 34444444443 23667889999999999999999999998888887755543 33333 788989988887777
Q ss_pred HHHHHhcc-cCCCh
Q 009108 273 LLALGMGL-SPESP 285 (543)
Q Consensus 273 ~~~~~~~~-~~e~~ 285 (543)
+.++..++ .||++
T Consensus 448 ~~~~~~~~~~~e~~ 461 (479)
T PRK10077 448 LAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHhccccCC
Confidence 66555443 46654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-11 Score=115.54 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009108 359 NAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSG 436 (543)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (543)
.......|.+.+++|.+.... ......++..++.++.|++.||+|||+.+..+..+.+++.+++.+. .+.
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--------~~~ 91 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--------SSY 91 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--------CcH
Confidence 445556677778888876644 6677788999999999999999999999999998888888777654 122
Q ss_pred hhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHH
Q 009108 437 TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLA 516 (543)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 516 (543)
+..++..++.+.+.+. ..+....++.+.+|+++|+.++++......++..++|.+.+.+.+..||++.|.+.+++.++.
T Consensus 92 ~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~ 170 (382)
T PRK10091 92 LMLAIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV 170 (382)
T ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 3333334444433332 233444567888998889999999999999999999999999999999999999888877666
Q ss_pred HHhhheecccCC
Q 009108 517 VLYIAVNVVETK 528 (543)
Q Consensus 517 ~~~~~~~~~~~~ 528 (543)
.+..++..|+.+
T Consensus 171 ~~~~~~~lp~~~ 182 (382)
T PRK10091 171 LASIYFWVPDIR 182 (382)
T ss_pred HHHHHHhCCCCC
Confidence 555555556543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=117.22 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 357 GINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
....+..+.|.+.+++|.+.... ......++..++.++.|+++||+|||+.+..+..+..++.+++.+. .
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------~ 96 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--------G 96 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--------C
Confidence 34556667888888888887654 4455667778899999999999999999988877777766655442 1
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHH
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCL 514 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 514 (543)
+.+..++..++.+.+.+. ..+....++.|.+|++.|+++.|+.+...++|..++|.+.|.+.+..||++.|.+...+..
T Consensus 97 ~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~ 175 (471)
T PRK10504 97 TLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI 175 (471)
T ss_pred CHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence 223333334444444332 3455566788999999999999999999999999999999999999999999988777766
Q ss_pred HHHHhhheeccc
Q 009108 515 LAVLYIAVNVVE 526 (543)
Q Consensus 515 ~~~~~~~~~~~~ 526 (543)
+..++.....++
T Consensus 176 l~~~~~~~~~~~ 187 (471)
T PRK10504 176 IGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHhCCC
Confidence 666555544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=116.71 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=118.3
Q ss_pred hHHHHHHHH-HHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 358 INAVVYYST-SVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 358 ~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
........+ .+.++++.+.... ......++..++.++.|+++||+|||+.+..+.++.+++.++..+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~ 83 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------S 83 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------h
Confidence 334444555 5666777766644 5666778899999999999999999999999998888885555432 1
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHH
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCL 514 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 514 (543)
+.+..++..++.+.+.+ ...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|++.+++.+
T Consensus 84 ~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 22334444444444433 34556666899999999999999999999999999999999999988999999999999888
Q ss_pred HHHHhhheec
Q 009108 515 LAVLYIAVNV 524 (543)
Q Consensus 515 ~~~~~~~~~~ 524 (543)
+..++...+.
T Consensus 163 ~~~il~~~~~ 172 (352)
T PF07690_consen 163 IAAILFILFL 172 (352)
T ss_dssp HHHHHHHCCC
T ss_pred hhhhhHhhhh
Confidence 8876533333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=114.88 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 419 (543)
...+...+..+........+....+.+.++++.+.... ......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 92 (406)
T PRK15402 13 LFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTC 92 (406)
T ss_pred HHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 33333333333333333434444566677888876644 5566778888999999999999999999998887777777
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
+.+.... +.+..++..++.+.+.+ ...+....++.|.+|++.++++.++......++..++|.+.+.+.+.
T Consensus 93 ~~~~~~~--------~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 163 (406)
T PRK15402 93 LAILLAQ--------SIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV 163 (406)
T ss_pred HHHHHHc--------cHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6665531 12223333333333332 22345556778999999999999999988889999999999999998
Q ss_pred hccccchhhhhHHHHHHHHhhheecccCC
Q 009108 500 FGISTVYLGFATVCLLAVLYIAVNVVETK 528 (543)
Q Consensus 500 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (543)
.+|+..+++.+++.+++.+..++..|+++
T Consensus 164 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 164 LPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999998888887776665555556543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-10 Score=114.75 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=118.5
Q ss_pred hHHHHHHHcCCCcchhhHHHHHH-HHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH---HHh-hhHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVS-SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIG 200 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~ 200 (543)
..|++.+++|.+.++. +++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.
T Consensus 245 ~~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~ 322 (491)
T PRK11010 245 TTTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA 322 (491)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4566677899999888 99874 5568999999999999999999988777666555544332 333 455555556
Q ss_pred HHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcc
Q 009108 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (543)
Q Consensus 201 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 280 (543)
-++..++.|...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+. .||+..|.+.++.+++..+...+
T Consensus 323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-HGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555566778888999999899999999999999988887788888876 78999999888888776666555
Q ss_pred cCC
Q 009108 281 SPE 283 (543)
Q Consensus 281 ~~e 283 (543)
+++
T Consensus 402 ~~~ 404 (491)
T PRK11010 402 CRQ 404 (491)
T ss_pred HHh
Confidence 443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=113.21 Aligned_cols=180 Identities=16% Similarity=0.107 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 009108 339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMA 416 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 416 (543)
.++..++.........+. ........|.+.++++.+.... ......++..++.++.|+++||+|||+.+..+..+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~-~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~ 84 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMA-QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 334444443333333222 2333334566777888877644 5566778889999999999999999999998888777
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009108 417 ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSV 496 (543)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 496 (543)
++.+...... +.+..++..++.+.+.+. ..+....+..|.++.+.++.+.+..+....++..++|.+.+.+
T Consensus 85 ~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 155 (394)
T PRK11652 85 LGTLVALFAH--------SLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL 155 (394)
T ss_pred HHHHHHHHHc--------cHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655431 122233333333333221 2334444677888888899999999999999999999999999
Q ss_pred HHhhccccchhhhhHHHHHHHHhhheecccCC
Q 009108 497 VNKFGISTVYLGFATVCLLAVLYIAVNVVETK 528 (543)
Q Consensus 497 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (543)
.+..||+..|.+.+++.++..++..++.+|++
T Consensus 156 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 156 TTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 99899999998877766655544444455543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=113.17 Aligned_cols=159 Identities=14% Similarity=-0.019 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q 009108 360 AVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT 437 (543)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (543)
......|.+..+.+.+.... ......++.+++.++.|+++||+|||+.+..+..+..++.+++.+..... ..+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 93 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG---GLNIW 93 (365)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC---CCcHH
Confidence 33344455556666665543 55667788889999999999999999999988887777766665542110 01223
Q ss_pred hHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHH
Q 009108 438 LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAV 517 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 517 (543)
...+...+.+.+.+ ...+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|++.++..++..
T Consensus 94 ~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 172 (365)
T TIGR00900 94 QVYVLAGILAIAQA-FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA 172 (365)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333444443333 23455666889999999999999999999999999999999999999999999888777666655
Q ss_pred Hhhhe
Q 009108 518 LYIAV 522 (543)
Q Consensus 518 ~~~~~ 522 (543)
++.+.
T Consensus 173 ~~~~~ 177 (365)
T TIGR00900 173 LLIVS 177 (365)
T ss_pred HHHHh
Confidence 44433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=112.81 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q 009108 360 AVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT 437 (543)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (543)
..++...++.++.|.+.... ......+...+..++.|+++||+|||+.+..+..+.+++.+.+... .+.+
T Consensus 29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--------~~~~ 100 (400)
T PRK11646 29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--------HEPW 100 (400)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--------ccHH
Confidence 33444444456678776655 4444567777778999999999999999999998888888777653 1223
Q ss_pred hHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHH
Q 009108 438 LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAV 517 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 517 (543)
...+...+.+.+.+ ...+...+++.|..|+++|++++|+.+...++|..++|.+.+.+. ..||+..|++.+++.++..
T Consensus 101 ~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 101 LLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 33333333333332 234455567889999999999999999999999999999999998 6789998888777766655
Q ss_pred Hhhheeccc
Q 009108 518 LYIAVNVVE 526 (543)
Q Consensus 518 ~~~~~~~~~ 526 (543)
++..++.++
T Consensus 179 i~~~~~~~~ 187 (400)
T PRK11646 179 AFNAWLLPA 187 (400)
T ss_pred HHHHHhCCc
Confidence 544444444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-11 Score=120.78 Aligned_cols=162 Identities=18% Similarity=0.095 Sum_probs=109.7
Q ss_pred hhHHHHHHHcCCCcchhh---------HHH-HHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhh-
Q 009108 125 GALEYLAKDLGIAENTVL---------QGW-IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS- 193 (543)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~---------~g~-~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~- 193 (543)
...|.+.++.|.+..... ... ...+..++..++.++.++++||+|||++++++..+.+++.++.++..+
T Consensus 309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~ 388 (502)
T TIGR00887 309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH 388 (502)
T ss_pred cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777788887654320 001 233444566678889999999999999998888888777666554321
Q ss_pred ---HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCC---------CchH
Q 009108 194 ---VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------LWWR 261 (543)
Q Consensus 194 ---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------~~wr 261 (543)
...+...-+...++..+..+....+.+|.+|.+.|++++++.+....+|.++++.+.+.+.+.. .++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 468 (502)
T TIGR00887 389 LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG 468 (502)
T ss_pred cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccch
Confidence 1111111111222222344566677899999999999999999999999999999888876531 3456
Q ss_pred HHHHHhHHHHHHHHHHhcccCCChh
Q 009108 262 TMFGLAAIPSILLALGMGLSPESPR 286 (543)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (543)
..|++.++..++..+..+++||++.
T Consensus 469 ~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 469 HVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred HHHHHHHHHHHHHHHHheEeccCCC
Confidence 6777777777766666667788754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.5e-12 Score=116.67 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=137.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 009108 348 ALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLS 425 (543)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (543)
++....+..--+.+..-.+.+.+.++.++. +.+.....++..+.++++|++.||++|++++.+|..+..++.++..+.
T Consensus 39 ~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs 118 (493)
T KOG1330|consen 39 CLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS 118 (493)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH
Confidence 333333333344444445555555565555 447777888999999999999999999999999999999998888876
Q ss_pred HhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-ccc
Q 009108 426 FTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-IST 504 (543)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g-~~~ 504 (543)
. ..|..++.-.+.+.|-. .+.++...+++|.+|..+|++++++++....+|..+|-.+.+.+.+..+ |++
T Consensus 119 ~--------~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~ 189 (493)
T KOG1330|consen 119 N--------HFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW 189 (493)
T ss_pred H--------HHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence 2 22334444445444443 4677778899999999999999999999999999998888877777777 999
Q ss_pred chhhhhHHHHHHHHhhheecccCCCCCHHHHH
Q 009108 505 VYLGFATVCLLAVLYIAVNVVETKGRSLEEIE 536 (543)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (543)
.|...+++.+++.++..++.+|++++..+|.+
T Consensus 190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred EEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 99999999999999888888887765554443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=114.08 Aligned_cols=144 Identities=15% Similarity=0.058 Sum_probs=120.0
Q ss_pred HHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 009108 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI 206 (543)
Q Consensus 127 ~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 206 (543)
.|...+|.|.+..+. |.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|+
T Consensus 228 ~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 305 (382)
T PRK11128 228 SAIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCG 305 (382)
T ss_pred HHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344446789988787 999999999999999999999999999999999999999988888889999999999999999
Q ss_pred hccccccchhhhhhccCCcccchhhhHHHH-HHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHH
Q 009108 207 GIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (543)
Q Consensus 207 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 275 (543)
+.+...+....++.+. +++++++..++.. ...++|..+||.++|.+.+. .|+ ..|+..+++.++.+
T Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 306 TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-LGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHH
Confidence 9998888888888887 5556788888876 55677889999999999876 566 46666666555443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-10 Score=112.37 Aligned_cols=155 Identities=11% Similarity=0.075 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhcc-CChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 358 INAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQ-GRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 358 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
++.+..+++.++. ++|++.... ..........++.+++|+++||+ |||+.+.++.++..++.+++....
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~------- 97 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE------- 97 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 4445555555543 467776644 45556677788899999999998 999999999998888876654320
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhH
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFAT 511 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~ 511 (543)
.......+...+...+.+. ..+...+++.|.+|++ .|.++.++.+...++|+.++|.+.+.+.+..||+..|.+.++
T Consensus 98 ~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 98 IHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred cchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 0111122222233333222 2344556889999875 699999999999999999999999999999999999988766
Q ss_pred HHHHHHHhh
Q 009108 512 VCLLAVLYI 520 (543)
Q Consensus 512 ~~~~~~~~~ 520 (543)
..+++.+..
T Consensus 177 gm~l~li~~ 185 (493)
T PRK15462 177 GMIAGLVIF 185 (493)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-11 Score=116.08 Aligned_cols=140 Identities=8% Similarity=0.067 Sum_probs=117.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccc
Q 009108 135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI 214 (543)
Q Consensus 135 ~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 214 (543)
+.+.... |++.++..+...++.++.|++.||+|+|+.+.++.++.++...+...+++.+.+++.+++.|++.......
T Consensus 250 ~~~~~~~--g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 327 (396)
T TIGR00882 250 QQGTRVF--GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVG 327 (396)
T ss_pred ccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3344445 88899988999999999999999999999999999999998888788899999999999999998766666
Q ss_pred hhhhhhccCCcccchhhhHH-HHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 215 VPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 215 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
...+..+..+++.++...+. .+....+|..++++++|++.+. .||+..|.+.++..++..+.
T Consensus 328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 66677787888777776665 5678899999999999999876 79999999988887665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=110.92 Aligned_cols=161 Identities=12% Similarity=0.011 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
........|.+.++++.+.... ......++..++.+..|+++||+|||+++.........+....... .+
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--------~~ 78 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--------FN 78 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--------cc
Confidence 3445566777778888887754 5555678888999999999999999887655443333332211110 12
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHH
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLL 515 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 515 (543)
....++.-++.+.+.+. .........|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.+++.++
T Consensus 79 ~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~ 156 (368)
T TIGR00903 79 YEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA 156 (368)
T ss_pred HHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 23344444444444332 2233335578899999999999999999999999999999999999999999998888777
Q ss_pred HHHhhheecccCC
Q 009108 516 AVLYIAVNVVETK 528 (543)
Q Consensus 516 ~~~~~~~~~~~~~ 528 (543)
..++.++..||.+
T Consensus 157 ~~~~~~~~lp~~p 169 (368)
T TIGR00903 157 GIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHcCCCC
Confidence 7666666666643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=115.79 Aligned_cols=152 Identities=16% Similarity=0.090 Sum_probs=104.2
Q ss_pred hhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh--cccchh-hhhhHHHHHHHHHHHH--hhhHHHHH
Q 009108 125 GALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLAAGAFLCAT--AQSVQTMI 198 (543)
Q Consensus 125 ~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~--~~~~~~l~ 198 (543)
..+|. +++++|.+..+. +++...+.++..++.++.|+++||+ |||+.. +....+..++.++..+ ..+.+.++
T Consensus 274 ~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (452)
T PRK11273 274 DWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM 351 (452)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 35555 445578887777 8999999999999999999999999 455432 2222333333332222 23444455
Q ss_pred HHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHH-HHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL-AALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 199 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
++.++.|.+..........+..|.+|+++||+++|+.+....+|.. ++|.+.+.+.+. .||+..|++.++.+++.++.
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~-~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-hcchHHHHHHHHHHHHHHHH
Confidence 5555566543332233345677999999999999999888778754 578888888876 68999999888777665554
Q ss_pred hc
Q 009108 278 MG 279 (543)
Q Consensus 278 ~~ 279 (543)
..
T Consensus 431 ~~ 432 (452)
T PRK11273 431 LI 432 (452)
T ss_pred HH
Confidence 43
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=113.55 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=141.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhccc--chhhhhhHHHHHHHHHHHH
Q 009108 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCAT 190 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~ 190 (543)
.+.++. .++......+..+++|++..+. ..+.-+..+..++|.+++|++.||+|.| ++++++++++.+..+...+
T Consensus 292 l~~dg~-~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~ 368 (477)
T PF11700_consen 292 LYSDGV-NTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLF 368 (477)
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence 334444 3344556667777999999988 7888888888999999999999999999 8988888888666665555
Q ss_pred --------hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 191 --------AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 191 --------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
.++-+.+.+.-++.|++.|..++...++.++..|+++.+..+|++....-....+||++.+.+.+...+-|+
T Consensus 369 G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~ 448 (477)
T PF11700_consen 369 GFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY 448 (477)
T ss_pred HhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 578888999999999999999999999999999999999999999999999999999999999877566899
Q ss_pred HHHHhHHHHHHHHHHhcccCCC
Q 009108 263 MFGLAAIPSILLALGMGLSPES 284 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~ 284 (543)
.+....++.++.++++++++.+
T Consensus 449 g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 449 GFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 8888887777777666665443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-10 Score=112.72 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 357 GINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
......+..+.+.++.+.++... ......++..++.++.|+++||+|||+.+..+..+.+++.++..+..
T Consensus 33 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------- 104 (426)
T PRK12307 33 DFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 34455556677777888876644 55667788899999999999999999999999988888887766641
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhH
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFAT 511 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~ 511 (543)
+.+..++.-++.+.+.+ ...+....++.|.+|+++|+++.++......+|.++++.+.+.+.+..+|+..|++...
T Consensus 105 ~~~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 22333444444444333 23445555788999999999999999999999999999999988888899998876443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=113.83 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHH---cCCCchhH--HHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009108 358 INAVVYYSTSVFRS---VGIESDVA--ASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFTGMAASMLLLSLSFTWKVL 431 (543)
Q Consensus 358 ~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (543)
++....+++.++++ +|.+.... ......++..++.+++|+++|| +|||+.+..+..+.+++.+++.+..
T Consensus 26 ~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~----- 100 (475)
T TIGR00924 26 YYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI----- 100 (475)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 45555556666544 57765544 5666778889999999999999 8999999999999888887776531
Q ss_pred ccccchhHHHHHHHHHHHhhcCcccccccccccccChhh---hhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhh
Q 009108 432 APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI---RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLG 508 (543)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~ 508 (543)
+.+...+...+.+.+.+ ...+....++.+.+|++. |+++.++.+...++|.+++|.+.+.+.++.||+..|.+
T Consensus 101 ---~~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 101 ---YPDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred ---cHhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 11223333333333322 234555667888887653 88899999999999999999999999999999999988
Q ss_pred hhHHHHHHHHhh
Q 009108 509 FATVCLLAVLYI 520 (543)
Q Consensus 509 ~~~~~~~~~~~~ 520 (543)
.++.++++.++.
T Consensus 177 ~~~~~~~~~l~~ 188 (475)
T TIGR00924 177 AAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHH
Confidence 776655554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-11 Score=115.76 Aligned_cols=161 Identities=12% Similarity=0.059 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
........|.+.++++.+.... ......++..++.++.|+++||+|||+.+..+..+..++.+++.+.. +
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~ 82 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--------S 82 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh--------h
Confidence 4455556677777778876644 56677888899999999999999999999999888888887776641 2
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHH-hhHHHHHhhccccchhhhhHHHH
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGL-YFLSVVNKFGISTVYLGFATVCL 514 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~ 514 (543)
.+..++..++.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..++|. +.+.+.+..+|+..|++.+++.+
T Consensus 83 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 83 LWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred HHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2333333333333333 345566668899999999999999999999999999994 66666677889998888887777
Q ss_pred HHHHhhheecccC
Q 009108 515 LAVLYIAVNVVET 527 (543)
Q Consensus 515 ~~~~~~~~~~~~~ 527 (543)
+..++.+++.++.
T Consensus 162 ~~~~~~~~~~~~~ 174 (379)
T TIGR00881 162 IVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHheeeCCC
Confidence 6666555555543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-10 Score=112.75 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
|........++.++++.+.... ....+.....+..+++|+++|| +|||+++..+.++..++.+.+.+...
T Consensus 31 y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~------- 103 (489)
T PRK10207 31 YGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL------- 103 (489)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3333334444445677776654 3334445555666789999999 99999999999999998888776411
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccccccChh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHH
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATV 512 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~ 512 (543)
......+...+.+.+.+ ...+...+++.|.+|++ +|+.++++.+...++|.+++|.+.|.+.++.||++.|++.++.
T Consensus 104 ~~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 104 KPDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred chhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 11112233333333332 24455567899999877 4577999999999999999999999999999999999886554
Q ss_pred HHHHH
Q 009108 513 CLLAV 517 (543)
Q Consensus 513 ~~~~~ 517 (543)
.+++.
T Consensus 183 ~~~~~ 187 (489)
T PRK10207 183 LIIAL 187 (489)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-10 Score=110.06 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=109.8
Q ss_pred HHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHH
Q 009108 365 STSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLG 442 (543)
Q Consensus 365 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (543)
.+.+.++++.+.... ......++..++.++.|+++||+|||+.+..+..+..++.++..+.. +.+..++.
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~ 100 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--------SAAQLLVL 100 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHH
Confidence 344567778776654 55667788899999999999999999999988877777776665431 22223333
Q ss_pred HHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhhe
Q 009108 443 TVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
.++.+.+.+. ..+....++.|.+|++.++...+..+....++..++|.+.+.+.+..||+..|.+.+++.++..++.+.
T Consensus 101 ~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 101 RFVQAVGVCS-AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHhhhHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3333333221 223334567889999889999999999999999999999999999999999988887777766655544
Q ss_pred ecc
Q 009108 523 NVV 525 (543)
Q Consensus 523 ~~~ 525 (543)
..+
T Consensus 180 ~~~ 182 (401)
T PRK11043 180 LKP 182 (401)
T ss_pred cCC
Confidence 433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=111.90 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=117.4
Q ss_pred HHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhH
Q 009108 362 VYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLA 439 (543)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (543)
....+.+.++++.+.... ......++..++.++.|++.||+|||+.+..+..+..++.+.+.+.. +.+..
T Consensus 11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~ 82 (377)
T PRK11102 11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--------TIDQL 82 (377)
T ss_pred hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--------cHHHH
Confidence 344566667778876644 55667788899999999999999999999999888888877776541 12233
Q ss_pred HHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHh
Q 009108 440 VLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLY 519 (543)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 519 (543)
.+..++.+.+.+ ...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|.+.+++.++..++
T Consensus 83 ~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 333333333333 2334455678899999999999999999999999999999999999999999998888777776665
Q ss_pred hheecccC
Q 009108 520 IAVNVVET 527 (543)
Q Consensus 520 ~~~~~~~~ 527 (543)
..+..+|+
T Consensus 162 ~~~~~~~~ 169 (377)
T PRK11102 162 VFFFIPET 169 (377)
T ss_pred HHHhCCcc
Confidence 55555543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-10 Score=111.89 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHH-HHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 358 INAVVYYSTSVF-RSVGIESDVA--ASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 358 ~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
++.+..+++.++ +++|.+.... .............+++|+++|| +|||+.+..+..+..++.+++.+...
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~------ 110 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH------ 110 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 334444444444 6678877654 2222333333445689999999 59999999999888888776665310
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhH
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI--RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFAT 511 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~ 511 (543)
......+...+.+.+.+. ..+....++.|.+|++. +..+.++.+...++|..++|.+.|++.+..||+..|.+.++
T Consensus 111 -~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 111 -DAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred -cHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 112222333334433332 34455567889987543 45688899999999999999999999999999999988776
Q ss_pred HHHHHH
Q 009108 512 VCLLAV 517 (543)
Q Consensus 512 ~~~~~~ 517 (543)
..+++.
T Consensus 189 ~~~i~~ 194 (500)
T PRK09584 189 GMLITV 194 (500)
T ss_pred HHHHHH
Confidence 555444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=113.21 Aligned_cols=151 Identities=23% Similarity=0.208 Sum_probs=134.4
Q ss_pred hhhHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 009108 124 NGALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (543)
Q Consensus 124 ~~~~~~i~-~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 202 (543)
..++|.+. +++|.+...+ |++.+++.+|..++.++.+++.+|+++++++..+.++++++.+..+++++.+..+++.+
T Consensus 238 ~aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~ 315 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF 315 (524)
T ss_pred HHhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34677665 5689888888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 203 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
+.|++.........+.+.+..|++.||++++++.+....+..+|.++.|.+.+. .|-+..+.+.++..++..++
T Consensus 316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-FGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHH
Confidence 999999988888889999999999999999999999999999999999999876 78888888777655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-08 Score=97.66 Aligned_cols=315 Identities=17% Similarity=0.080 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcc
Q 009108 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (543)
Q Consensus 147 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 226 (543)
.++.+..+.+++++.+.+.|+.|+|+.++++...+....+..-+ +|-+.++++-.+.|+|.+..+..-..++++..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77778888899999999999999999999999998887766555 45667889999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhcccCCC-------CCchH--------------HHHHHhHHHHHHHHHHhcccCCCh
Q 009108 227 IRGALGSVNQLFICVGILAALVAGLPLAGN-------PLWWR--------------TMFGLAAIPSILLALGMGLSPESP 285 (543)
Q Consensus 227 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-------~~~wr--------------~~f~~~~~~~~~~~~~~~~~~e~~ 285 (543)
.+.+..++..+....+.++|..+-..+... ..+-+ ..+.+...+..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999998888888888886655443211 01111 111111111112222223333321
Q ss_pred hHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009108 286 RWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYS 365 (543)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (543)
.....+..+....+.++ ...+++++++...+........+. ...+...|.
T Consensus 215 ~~~~~~~~~~~~~~~l~---------------------------~~~~l~~~~~ml~L~~~f~~tG~~---~Sf~~~iyp 264 (461)
T KOG3098|consen 215 VVNCKSSSETSFSELLK---------------------------LTFKLLKTPKMLLLFPFFFYTGLE---TSFWISIYP 264 (461)
T ss_pred hhhhhhhccccHHHHHH---------------------------HHHHHhcCHhHHHHHHHHHHHHHH---HHHHHhccc
Confidence 10000000000011000 112233344333333222222221 122223333
Q ss_pred HHHHH--HcCCCchhH---HHHHHHHHHHHHHHHHHHhhhc---cCChhHHHHHHHHHHHHHHHHHHHHhhcc-ccc---
Q 009108 366 TSVFR--SVGIESDVA---ASALVGAANVFGTAVASSLMDR---QGRKNLLTFSFTGMAASMLLLSLSFTWKV-LAP--- 433 (543)
Q Consensus 366 ~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 433 (543)
..+.- ..+.+.... .....+++.+++....+.+.+| +|+++.+.++..+..+++++.......+. ..+
T Consensus 265 t~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~ 344 (461)
T KOG3098|consen 265 TCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS 344 (461)
T ss_pred hhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence 22221 223322222 4455677788888888888766 67788888888777777766655433221 001
Q ss_pred ------ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009108 434 ------YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 494 (543)
Q Consensus 434 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 494 (543)
......++...+.+.+-. .+....+.++.+.+| +.|..+.++.-.-..++..++-....
T Consensus 345 ~~~~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 345 PPLLFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred cccccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 011122232333333322 344455557888885 56888888888888887766555444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=114.34 Aligned_cols=160 Identities=16% Similarity=0.067 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchh
Q 009108 361 VVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTL 438 (543)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (543)
.....|.+.+ .+.+.... ......++..++.++.|+++||+|||+.+..+.++.+++.+++...... ..+...
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 120 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA----TSSIAI 120 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----cchHHH
Confidence 3444555544 57766644 5566778889999999999999999999888887777776665432110 001112
Q ss_pred HHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH-hhccccchhhhhHHHHHHH
Q 009108 439 AVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN-KFGISTVYLGFATVCLLAV 517 (543)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~ 517 (543)
..+..++.+.+.+.. .+.....+.|.+|+++|++++|+.+...++++.+++.+.+...+ ..+|+..|++.+++.++..
T Consensus 121 l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~ 199 (438)
T TIGR00712 121 MFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVA 199 (438)
T ss_pred HHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 222233334333332 33344467789999999999999999999999999988876554 4689999998888877766
Q ss_pred Hhhheeccc
Q 009108 518 LYIAVNVVE 526 (543)
Q Consensus 518 ~~~~~~~~~ 526 (543)
++.+++.+|
T Consensus 200 ~~~~~~~~~ 208 (438)
T TIGR00712 200 LFAFAMMRD 208 (438)
T ss_pred HHHHHhccC
Confidence 555555554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=106.41 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=108.3
Q ss_pred hhHHHHHHHHH-HHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 357 GINAVVYYSTS-VFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
.......+.|. +.++++.+.... ......++.+++.++.|+++||+|||+.+..+.++..++.+++.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------ 89 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------ 89 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh------
Confidence 34556666674 667788887754 566678889999999999999999999999999888888877765420
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh----------hccc
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK----------FGIS 503 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~----------~g~~ 503 (543)
+.+..++..++.+.+. +..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+... .+|+
T Consensus 90 -~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 90 -SYSVLLLLRLFIGIAG--GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred -hHHHHHHHHHHHHHhc--hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 1222333333333332 22333455788999999999999999988888888888777766653 3688
Q ss_pred cch-hhhhHHHHHHHHhhhe
Q 009108 504 TVY-LGFATVCLLAVLYIAV 522 (543)
Q Consensus 504 ~~~-~~~~~~~~~~~~~~~~ 522 (543)
+.+ +..+++..+..++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~ 186 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFF 186 (366)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 887 4334444443333333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-09 Score=93.97 Aligned_cols=174 Identities=16% Similarity=0.058 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
|..+......+...+. ...++..-|.+++.+|.++++. ..+.++-.+|..+ +++.|.+.|++|++.++.+|.+...
T Consensus 2 W~~l~a~~~v~~~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGT-TYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcCc-ccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4444444444444443 3445667899999999999998 9999999999876 5889999999999999999999999
Q ss_pred HHHHHHHHh-------hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC
Q 009108 183 AGAFLCATA-------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (543)
Q Consensus 183 i~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 255 (543)
+|..+...+ .++|.+.+..++.|.+.+....++.....+.||. +||.+.|+.-...+++..+-..+...+.+
T Consensus 78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 998877654 4678888888888888877777777777889985 59999999999999986655444444433
Q ss_pred CCCchHHHHHHhHHHHHHHHHHhcccC
Q 009108 256 NPLWWRTMFGLAAIPSILLALGMGLSP 282 (543)
Q Consensus 256 ~~~~wr~~f~~~~~~~~~~~~~~~~~~ 282 (543)
. ..-+..+.+...+.++.++..++++
T Consensus 157 ~-~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 157 D-DPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHhhhee
Confidence 3 3334444444444444444444543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=113.82 Aligned_cols=173 Identities=20% Similarity=0.191 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhc--ccchhhhhhHHHHHHH
Q 009108 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGA 185 (543)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~ 185 (543)
...+...+..+........+|...++++.+..+. +.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 3344455555555666668899999999999998 99999999999999999999999998 5567788888889999
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHH
Q 009108 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (543)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~ 265 (543)
+.+.++++++.++..-.+.|++.|........++.|..+.++-..+.|+.....+++.++||.+++.+.+...+|...|+
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 99999999999999999999999988888888999999999999999999999999999999999999888667999999
Q ss_pred HhHHHHHHHHHHhcccC
Q 009108 266 LAAIPSILLALGMGLSP 282 (543)
Q Consensus 266 ~~~~~~~~~~~~~~~~~ 282 (543)
..++..++..+..++.+
T Consensus 460 ~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 460 FCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcChHHHHHHHHHHHhH
Confidence 99998888777666655
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=112.71 Aligned_cols=148 Identities=10% Similarity=0.028 Sum_probs=108.1
Q ss_pred cCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 009108 372 VGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLS 449 (543)
Q Consensus 372 ~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (543)
++.+.... ......++.+++.++.|++.||+|+|+.+..+.++..++.++..+... ......++.-++.+.+
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHHHHh
Confidence 34444433 566677889999999999999999999999888777777666543211 0122333333333333
Q ss_pred hhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh-ccccchhhhhHHHHHHHHhhheeccc
Q 009108 450 FSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF-GISTVYLGFATVCLLAVLYIAVNVVE 526 (543)
Q Consensus 450 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
.+ ...+....++.|.+|+++|++++|+.+....+|.++++.+.+.+.+.. ||+..|.+.+++.++..++.+.+.++
T Consensus 145 ~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 145 QG-SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred cc-cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 33 345566668999999999999999999999999999999999999884 99999999888777666555544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=92.56 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccc
Q 009108 384 VGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLP 463 (543)
Q Consensus 384 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (543)
..++.+++.++.+++.||++||+.+..+..+..++.+.+... .+.+.......+.+.+.+ ...+....++.
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 77 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--------SNITVLIIARFLQGFGAA-FALVAGAALIA 77 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHH-HHHHhHHHHHH
Confidence 456788899999999999999999988887777776665543 122233333333333333 23455666788
Q ss_pred cccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheeccc
Q 009108 464 EIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVE 526 (543)
Q Consensus 464 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
|..|+++|+++.++.+....++..++|.+.+.+.+..+++..+.+.+.+.++..+..+...+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999998888888888887777776666555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-10 Score=110.07 Aligned_cols=153 Identities=16% Similarity=0.043 Sum_probs=97.6
Q ss_pred hHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH--H--hhhHHHHHHH
Q 009108 126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--AQSVQTMIIG 200 (543)
Q Consensus 126 ~~~-~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~l~~~ 200 (543)
.+| ++.+++|.+..+. ++..++..++..+++++.|+++||+|||+++.++.++.++..+... . .++....+..
T Consensus 265 ~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (432)
T PRK10406 265 YMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGL 342 (432)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 344 4556789887777 8888888888889999999999999999988776665444332221 1 1233322222
Q ss_pred HHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHH-HHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 201 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
-++.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+. ....|...++..++..++..+..+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 343 VMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHH
Confidence 22222333333445667889999999999999998765443 2334677766553 323466666666555555555444
Q ss_pred cc
Q 009108 280 LS 281 (543)
Q Consensus 280 ~~ 281 (543)
++
T Consensus 422 ~l 423 (432)
T PRK10406 422 ML 423 (432)
T ss_pred Hh
Confidence 44
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=117.19 Aligned_cols=139 Identities=19% Similarity=0.100 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhccccccchhhhhhcc
Q 009108 145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVLAGIGIGISSAIVPLYISEI 222 (543)
Q Consensus 145 ~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 222 (543)
+...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566677888999999999999999999999999988888777644 4555566777777777788888999999
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccCCChh
Q 009108 223 SPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (543)
Q Consensus 223 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (543)
+|++.|+.++|+.+....+|.+++|.+.+ +. . .++...+++.++..++..+..+++||+..
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-E-KWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-H-HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 99999999999999999999999999988 43 2 56777888888888777777778888653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-09 Score=101.20 Aligned_cols=162 Identities=10% Similarity=0.062 Sum_probs=103.5
Q ss_pred HHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q 009108 361 VVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT 437 (543)
Q Consensus 361 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (543)
.....+.+.+ +++++..+. ...+..++..+.++..|++.||+|.|+++.++.++..+..+.+.+.... ...+..
T Consensus 53 ~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~---~~~s~~ 129 (462)
T PRK15034 53 FSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN---PNTPFG 129 (462)
T ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc---cCCCHH
Confidence 3333444433 578877655 5555677788889999999999999999999988888777766653110 001223
Q ss_pred hHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH-----Hhhc-----------
Q 009108 438 LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV-----NKFG----------- 501 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~-----~~~g----------- 501 (543)
..++..++.+.+ .+..+.....+++.+|+++||+++|+....+++|..+++.+...+. +..|
T Consensus 130 ~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~ 207 (462)
T PRK15034 130 IFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSV 207 (462)
T ss_pred HHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccch
Confidence 334444444443 2244455557889999999999999997777777766555444322 3333
Q ss_pred --cccchhhhhHHHHHHHHhhheecccC
Q 009108 502 --ISTVYLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 502 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
++.+.++...+.++..++.+++.++.
T Consensus 208 ~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 208 MSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44455566666666666666555543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=101.84 Aligned_cols=179 Identities=15% Similarity=0.061 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
-.+.++..-..+.++.+.. +.....+-+.++|++..+. ..+.-.-.+..+++++++|++.||+|.|+++.+++++..
T Consensus 253 ~i~~FLiA~~~~~DGv~ti-l~~~~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTI-LAMGGVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred chHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 3444455555566666443 3444455566999999888 888888888889999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 183 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
+.++..-+...-..+.++-.+.|.+.|+.+..+.++..+..|+++-++.+|+++...-.+..+||.+.+.+.+.+..-|.
T Consensus 330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~ 409 (438)
T COG2270 330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA 409 (438)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence 98888777766666777778999999999999999999999999999999999999999999999999988876667788
Q ss_pred HHHHhHHHHHHHHHHhcccCCC
Q 009108 263 MFGLAAIPSILLALGMGLSPES 284 (543)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~ 284 (543)
-+....++..+..+..+.+|+.
T Consensus 410 g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 410 GVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhhHhhEEeecCC
Confidence 8877777776666666666654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=106.75 Aligned_cols=149 Identities=18% Similarity=0.077 Sum_probs=112.6
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHH-HHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH------hhhHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT------AQSVQTMI 198 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~l~ 198 (543)
..+.+.+|.|.+.++. |++...... ...++.++.|++.||+|+|+.+..+.++.++..+.... .++...++
T Consensus 230 ~~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred HhhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 3444556689999888 998888764 66677899999999999999988877766443332221 12334445
Q ss_pred HHHHHHhhhccccccchhhhhhccCCc-ccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 199 IGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 199 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
...++.+++.+...+.....+.+..++ +++++.+++.+...++|..++|.++|.+.+. .||+..|++.+++.++..+.
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH
Confidence 555666777777777777787777776 7789999999999999999999999999876 78999998887766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=107.49 Aligned_cols=134 Identities=15% Similarity=0.025 Sum_probs=95.6
Q ss_pred hhhHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH-HHH---HhhhHHHHH
Q 009108 124 NGALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF-LCA---TAQSVQTMI 198 (543)
Q Consensus 124 ~~~~~~i~-~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~---~~~~~~~l~ 198 (543)
....|.+. +.+|.+..+. ++....+.++..++.+++|+++||+|||++++.+.++..+... ... ..+++..+.
T Consensus 258 ~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (434)
T PRK15075 258 TVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML 335 (434)
T ss_pred HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 34455544 4589988877 8888889999999999999999999999988776554433221 111 123444455
Q ss_pred HHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHH-HHHHHHHHHHHhhcccCCCCCch
Q 009108 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQL-FICVGILAALVAGLPLAGNPLWW 260 (543)
Q Consensus 199 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~~~w 260 (543)
+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+++.+. .|+
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~-~g~ 397 (434)
T PRK15075 336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV-TGD 397 (434)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh-cCC
Confidence 556666777776666677889999999999999998544 4445566788888888765 454
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=121.99 Aligned_cols=145 Identities=23% Similarity=0.298 Sum_probs=123.6
Q ss_pred hHHHHHHHcCCCcc-hhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009108 126 ALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (543)
Q Consensus 126 ~~~~i~~~~~~s~~-~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 204 (543)
..+++.+++|.+.. .. +++.+.+.++..++++++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.
T Consensus 255 ~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF 332 (1146)
T ss_pred hHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44566677899887 77 9999999999999999999999999999999999999988888888888999999999999
Q ss_pred hhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 205 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
|++.+...+...+++.+.+|+++||+++++.+....+|.++++.+++.+.....++...|++.+.+.+
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999988889999999999999999999999999999888888877664322456666666555443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=100.71 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=108.5
Q ss_pred hHHHHHH--HcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 009108 126 ALEYLAK--DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (543)
Q Consensus 126 ~~~~i~~--~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 203 (543)
...++.+ .+|.++++. ++..+.+..++.++.++.+++.||+|+|+++.++.++..++.++....++... ..+-++
T Consensus 163 ~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l 239 (310)
T TIGR01272 163 LVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLA 239 (310)
T ss_pred HHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 4444543 368888888 99999999999999999999999999999998888888887766666554433 345668
Q ss_pred HhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHH
Q 009108 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~ 269 (543)
.|++.+..+|...+...+.++++ .+.+.++. ....+|..+.|.+.|.+.+. .|.+..|++..+
T Consensus 240 ~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~-~g~~~a~~v~~~ 302 (310)
T TIGR01272 240 LGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC-LGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh-ccchHHHHHHHH
Confidence 99999999999999999988765 45666665 45668889999988888776 678888874443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-09 Score=98.22 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009108 359 NAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSG 436 (543)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (543)
..+....+.+.+++++++.+. +..+..+.+.+.++..|++.||+|.|++...+.++..+-++.+.+..... +.
T Consensus 31 ~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~-----~~ 105 (417)
T COG2223 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP-----ST 105 (417)
T ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC-----ch
Confidence 344444455557788888866 56667788999999999999999999999999999888888888764321 11
Q ss_pred hhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc---cccchhhhhHHH
Q 009108 437 TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG---ISTVYLGFATVC 513 (543)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g---~~~~~~~~~~~~ 513 (543)
+..++..++.+. ..+...+...+++..+|++++|.++|+.. .+|+|..+...+...+....| |+....+.....
T Consensus 106 ~~ll~~gll~G~--~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l 182 (417)
T COG2223 106 WQLLVIGLLLGL--AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVAL 182 (417)
T ss_pred HHHHHHHHHHhc--ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 233333333333 33344555568999999999999999999 999999999999988888888 888888888888
Q ss_pred HHHHHhhheeccc
Q 009108 514 LLAVLYIAVNVVE 526 (543)
Q Consensus 514 ~~~~~~~~~~~~~ 526 (543)
++..+..++..++
T Consensus 183 ~v~~v~~~~~~~d 195 (417)
T COG2223 183 AIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHhCC
Confidence 8877777776554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.1e-10 Score=110.33 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=98.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhccccccch
Q 009108 137 AENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGISSAIV 215 (543)
Q Consensus 137 s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~ 215 (543)
+.... +++.++..++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+..
T Consensus 255 ~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (437)
T TIGR00792 255 DPELF--SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLV 332 (437)
T ss_pred ChHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 788888899999999999999999999999999998888887777665 466777788889999999888888
Q ss_pred hhhhhccCC-------cccchhhhHHHHHHHHHHHHHHHHhhcccCC
Q 009108 216 PLYISEISP-------TEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (543)
Q Consensus 216 ~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 255 (543)
.++++|..+ ++++|.++++.+....+|..+++.+.+.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889888865 4556999999999999999999988887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.7e-09 Score=101.94 Aligned_cols=157 Identities=10% Similarity=0.047 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
........|.+.++++.+.... ......++..++.+..|++.||+|||+.+..+..+.+++.+++...... .+
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~-----~~ 93 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI-----MN 93 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh-----cc
Confidence 3455566778888888887654 5666788999999999999999999999999999988888776443110 12
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh----------------
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK---------------- 499 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~---------------- 499 (543)
.+..++..++.+.+.+.. .+....++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus 94 ~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~ 172 (410)
T TIGR00885 94 YTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPE 172 (410)
T ss_pred HHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHH
Confidence 233344444444444432 233344677888989999999999999999999999998877532
Q ss_pred ----------hccccchhhhhHHHHHHHHhh
Q 009108 500 ----------FGISTVYLGFATVCLLAVLYI 520 (543)
Q Consensus 500 ----------~g~~~~~~~~~~~~~~~~~~~ 520 (543)
.+|+.+|.+.+++.++..++.
T Consensus 173 ~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 173 ELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888777666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=103.60 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=105.0
Q ss_pred hhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-cccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 009108 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (543)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 203 (543)
...|.+.++.|.+..+. +.+.+.+.++..++.++.|++.||+ +||+.+..+.++.+++.+++.+.++.+... .-++
T Consensus 218 ~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 294 (355)
T TIGR00896 218 GWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence 35676667789988888 9999999999999999999999999 566677778888888777777665433332 4567
Q ss_pred HhhhccccccchhhhhhccCC-cccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchH
Q 009108 204 AGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr 261 (543)
.|++.+..++.....+.+..+ +++++...++.+....+|..++|.+.+++.+...+|.
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 899999888887777765554 5667888999888888899999999998876544443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-09 Score=119.06 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=119.9
Q ss_pred HHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh---------------
Q 009108 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--------------- 191 (543)
Q Consensus 127 ~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------------- 191 (543)
.+++.+.+|.+.... |++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 249 p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 249 PLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 344556689988888 999999999999999999999999988887777777776666555543
Q ss_pred -----hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHH
Q 009108 192 -----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (543)
Q Consensus 192 -----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~ 266 (543)
++.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++.+.+.+...++...+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 677888889999999999999999999999999999999999999999999999999988876443567777766
Q ss_pred hHHHHHH
Q 009108 267 AAIPSIL 273 (543)
Q Consensus 267 ~~~~~~~ 273 (543)
.+++.++
T Consensus 407 ~~~~~~~ 413 (1140)
T PRK06814 407 IALANLI 413 (1140)
T ss_pred HHHHHHH
Confidence 6554443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=105.87 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=119.4
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH-HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 009108 337 SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA-ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGM 415 (543)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 415 (543)
++++...+...++.....+........-++.+..+.|-++... ......++..++.++.|+++|.+|||..++.+.++.
T Consensus 39 s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 39 SPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 3444444444444443333333333444566777777766543 556667788888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009108 416 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLS 495 (543)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 495 (543)
.++.++.+.+ .+....+.+..+.+.+.+ ........++|..|.+.|+.+.++.....-....+++.+...
T Consensus 119 vvG~Iv~atA--------~~~~~~iag~~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~ 188 (599)
T PF06609_consen 119 VVGSIVCATA--------QNMNTFIAGMVLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL 188 (599)
T ss_pred HhHHHHhhcC--------CcHHHHHHHHHHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence 9999988764 233445555666555533 333444568999999999888877765554555566777666
Q ss_pred HHHhhccccchhhhhHHHHHHHHhhhee
Q 009108 496 VVNKFGISTVYLGFATVCLLAVLYIAVN 523 (543)
Q Consensus 496 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 523 (543)
+..+.+|++.|++.+++..++.+..+++
T Consensus 189 ~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 189 FAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 6666789999998888777666554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-09 Score=97.47 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=99.2
Q ss_pred HHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhh----hhcccchhhhh-hHHHHHHHHHHHHhh
Q 009108 118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQLD-AVPLAAGAFLCATAQ 192 (543)
Q Consensus 118 ~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~ 192 (543)
+.+..-....+.+.+++|++..-. +.+--+--+...+.+|+.|..+| ||||||.++.. .+...++.++.+++.
T Consensus 46 f~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aa 123 (498)
T KOG0637|consen 46 FGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAA 123 (498)
T ss_pred HHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHh
Confidence 333333446667778889887766 77777777777889999999999 58988877654 444556666777765
Q ss_pred hHHH-----------------HHHHHHHHhhhccccccchhhhhhccCCcccchh-hhHHHHHHHHHHHHHHHHhhccc
Q 009108 193 SVQT-----------------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVNQLFICVGILAALVAGLPL 253 (543)
Q Consensus 193 ~~~~-----------------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~~l 253 (543)
++.. ++++.-+.=++.-....++-+++.|...++++.+ +++++.....+|..+|..++.+.
T Consensus 124 Dig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 124 DIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 5443 3344444445555778889999999998877777 99999999999999999888754
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=9e-07 Score=85.85 Aligned_cols=372 Identities=15% Similarity=-0.017 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHH
Q 009108 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (543)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 187 (543)
.++...++...+.-+.....+.+..+..-+ +-...+...-.-.+...++++..|.+.||..|.++...+.+.--++..+
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~-sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~ 84 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPG-SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAA 84 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Confidence 346666777666777777777776666321 1111133333344556678888999999999999887776654333222
Q ss_pred HH------Hh--h----hHHHHHHHH---HHHhhhcccc-ccchhhhhhccC------CcccchhhhHHHHHHHHHHHHH
Q 009108 188 CA------TA--Q----SVQTMIIGR---VLAGIGIGIS-SAIVPLYISEIS------PTEIRGALGSVNQLFICVGILA 245 (543)
Q Consensus 188 ~~------~~--~----~~~~l~~~r---~l~G~~~g~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~ 245 (543)
++ +. + +-+....+. .+.|.-.-.. .....++=.||. +++.+.+.++...-.-.+.-++
T Consensus 85 s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll 164 (432)
T PF06963_consen 85 SCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL 164 (432)
T ss_pred HHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence 21 11 1 112222222 2222211111 111122223453 2344467777777777888999
Q ss_pred HHHhhcccCCCCCchHHHHHHhHHHHHHHHHH-hcc---c-CCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHh
Q 009108 246 ALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGL---S-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA 320 (543)
Q Consensus 246 ~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~---~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (543)
+|++.|.+... .+.+....+.++..++..+. .++ + ...|. +..+++.++........ .....+......+..
T Consensus 165 aPl~vG~l~t~-~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (432)
T PF06963_consen 165 APLFVGLLMTF-ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRL 241 (432)
T ss_pred HHHHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHH
Confidence 99999998765 67777777777777664432 111 1 22222 22222211111100000 000000000000000
Q ss_pred ccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHh
Q 009108 321 GQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSL 398 (543)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l 398 (543)
.+.-.+....|+..++.+.+...+-...+++- ..+ +......+....|+++... .-....+.++.+.++.+++
T Consensus 242 ~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLs----f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l 316 (432)
T PF06963_consen 242 WNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLS----FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWL 316 (432)
T ss_pred HHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-Hhc----CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001123455666666655543333333322 222 2233334445568887744 4456677889999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHHHHHhhcccc--cccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHH
Q 009108 399 MDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLA--PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 476 (543)
Q Consensus 399 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 476 (543)
.+|+|..+.-.++......++.+..........+ ..+....+.++.+.-.|.- ++-....-+++|..|+++||...|
T Consensus 317 ~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~g 395 (432)
T PF06963_consen 317 MKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSG 395 (432)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHH
Confidence 9999998888888777666655555443332211 1111122222222222211 122223337889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 009108 477 LSLGMHWISNFVI 489 (543)
Q Consensus 477 ~~~~~~~~g~~~~ 489 (543)
+-+...++...+.
T Consensus 396 vq~sl~~lf~ll~ 408 (432)
T PF06963_consen 396 VQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-09 Score=103.34 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=105.0
Q ss_pred HHHHHHHcCCCcchhhHHHHHHHHH-HHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH---HHh-hhHHHHHHHH
Q 009108 127 LEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIGR 201 (543)
Q Consensus 127 ~~~i~~~~~~s~~~~~~g~~~s~~~-l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~r 201 (543)
.+.+.+++|.+.++. +++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.++++-
T Consensus 233 ~~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 233 TTFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 456777899998888 88886654 5688999999999999999998877777666554433 344 4556555554
Q ss_pred ----HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHH
Q 009108 202 ----VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (543)
Q Consensus 202 ----~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 277 (543)
++.|++.+...+....++.+.+|.+++ ++.....++|..+++.++|.+.+. .||+..|.+.++++++..++
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~-~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA-YGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777776544 455555567776566678888776 89999999988888776555
Q ss_pred hc
Q 009108 278 MG 279 (543)
Q Consensus 278 ~~ 279 (543)
.+
T Consensus 386 ~~ 387 (402)
T PRK11902 386 LW 387 (402)
T ss_pred HH
Confidence 43
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=97.76 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=99.5
Q ss_pred HHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhh
Q 009108 153 GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALG 232 (543)
Q Consensus 153 ~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 232 (543)
.-.-|.++.+++.||+|||+.+..+.+++++..++...+.+-..+.+.-|..-++..+.+.+++.|..|.+|..-|+...
T Consensus 393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgv 472 (528)
T KOG0253|consen 393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGV 472 (528)
T ss_pred hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcch
Confidence 34467789999999999999999999999999988877755444444444444455666778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcccCCCh
Q 009108 233 SVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESP 285 (543)
Q Consensus 233 ~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 285 (543)
|.-....-+|.++.|+++ ... + ..-..+..+.+...++..+...++|-++
T Consensus 473 GtcSsmaRIggI~~p~iA-~~~-e-~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 473 GTCSSMARIGGIFSPVIA-MRA-E-LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhHHhhhhhhhhHHH-HHh-c-cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999998 222 2 2334455566677777777777776443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.4e-10 Score=105.40 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHcCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 358 INAVVYYSTSVFRSVGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
...+.+++--.+++.+.... +......-.+.++.-++.+++.+|+|+-+++..++....+=++.+... .+
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------~n 458 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------QN 458 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------cC
Confidence 33444444444566554333 224455567788888999999999999999988887777766666654 13
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHH-HHHHHHHHHhhHHHHHhhccccchhhhhHHHH
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMH-WISNFVIGLYFLSVVNKFGISTVYLGFATVCL 514 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 514 (543)
+|..+..-++-+......+..+. +|+....||+.+.++.++..... .+|-.+|+++.|.+.+.+|.+..|.++++.++
T Consensus 459 ~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl 537 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACL 537 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHH
Confidence 34444444555555554444344 48999999999999999987764 57888999999999999999999998888877
Q ss_pred HHHHhhh
Q 009108 515 LAVLYIA 521 (543)
Q Consensus 515 ~~~~~~~ 521 (543)
+..++..
T Consensus 538 ~~l~~~~ 544 (618)
T KOG3762|consen 538 VTLALFI 544 (618)
T ss_pred HHHHHHH
Confidence 7665443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=99.00 Aligned_cols=161 Identities=18% Similarity=0.125 Sum_probs=116.3
Q ss_pred HhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh---hhHH---
Q 009108 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQ--- 195 (543)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~--- 195 (543)
........+-++-|++..+. .++.........+..+++..+.||+|||+.++.++.+..+..+++... .+..
T Consensus 288 ai~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (485)
T KOG0569|consen 288 AIFFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSW 365 (485)
T ss_pred eeHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33445567788889998888 888888899999999999999999999999999999999988777654 2221
Q ss_pred ---HHHHHHHHHhhhccc-cccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHH
Q 009108 196 ---TMIIGRVLAGIGIGI-SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (543)
Q Consensus 196 ---~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~ 271 (543)
..+++.++..++.+. .-|...-+.+|.+|++.|+.++++.....-+...+-...-..+.+. .|= +.|.+..+++
T Consensus 366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-~g~-~~filF~i~~ 443 (485)
T KOG0569|consen 366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-IGP-YVFILFVIPL 443 (485)
T ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-hhhHHHHHHH
Confidence 123333333333322 3567788899999999999999998888777766655555444433 332 6777777777
Q ss_pred HHHHH-HhcccCCChh
Q 009108 272 ILLAL-GMGLSPESPR 286 (543)
Q Consensus 272 ~~~~~-~~~~~~e~~~ 286 (543)
++..+ .+..+||++.
T Consensus 444 ~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 444 AIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHHhCcccCC
Confidence 66555 4555799864
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=98.85 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHHHHHHhhhcc-----CChhHH-HHHHHHHHHHHHHHHHHHhhcccc
Q 009108 360 AVVYYSTSVFRSVGIESDVAASAL-VGAANVFGTAVASSLMDRQ-----GRKNLL-TFSFTGMAASMLLLSLSFTWKVLA 432 (543)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 432 (543)
....-.|.+.++.|.+........ ..+...+ .++.|+++||+ ||||.+ +.+.++.++....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~------ 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV------ 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC------
Confidence 344456777788888887663222 2333333 88999999997 788864 455555555544444321
Q ss_pred cccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc--------ccc
Q 009108 433 PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG--------IST 504 (543)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g--------~~~ 504 (543)
+....+.+....+..........+...+++.|.+|+++|+.+.++.....++|.++++.+.+.+.+..| |+.
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 111122222222222222333345556688999999999999999999999999999999999988888 999
Q ss_pred chhhhhHHHHHHHHhhheecccC
Q 009108 505 VYLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
.|++.+++.++..++.++..+|+
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 99888887776655544444554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-07 Score=96.53 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=123.6
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh-hcccchhhhhhHHHHHHHHHHHHhhh--------H
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQS--------V 194 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~ 194 (543)
..+.-++.+.+|.+.+.. ..+...+....-+..+++|+++|+ +|+++.++++.++..++.++.+++.. .
T Consensus 8 aiLvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 345667777889988877 788888888888999999999996 69999999999999999888776421 2
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhccCCccc---chhhhHHHHHHHHHHHHHHHHhhcccCCC------CCchHHHHH
Q 009108 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGN------PLWWRTMFG 265 (543)
Q Consensus 195 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~------~~~wr~~f~ 265 (543)
...+++-.+..+|.|+.-+...+...|.+++++ |...+.++..+.++|.++++.+..++.+. ..+|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 336677788899999999999999999997643 56788888999999999998888777522 247999999
Q ss_pred HhHHHHHHHHHHhc
Q 009108 266 LAAIPSILLALGMG 279 (543)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (543)
+.++..++..+...
T Consensus 166 i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 166 VPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-08 Score=97.06 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=111.4
Q ss_pred HHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 009108 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (543)
Q Consensus 128 ~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 207 (543)
+++++.+|.++.+. |++.+.+.++..+++++.+++.||+++|+++..+. +.++..++.++.++++.+++..++.|++
T Consensus 230 ~~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 230 AWAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45667789998888 99999999999999999999999999998888775 4455555666778888788888899999
Q ss_pred ccccccchhhhhhccCCccc-chhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHH
Q 009108 208 IGISSAIVPLYISEISPTEI-RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (543)
Q Consensus 208 ~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~ 271 (543)
.+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+......++..|...+.+.
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLV 371 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99888888888888766554 69999999999999999998888866432233444444454443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-09 Score=106.83 Aligned_cols=177 Identities=12% Similarity=-0.006 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHH
Q 009108 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLL 422 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 422 (543)
+...+..+...........-++.+.++++++.... +.....++..++.++.+++.||.+||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33333444443334455555667777777776644 5666778889999999999999999999999999999999888
Q ss_pred HHHHhhccc-----------------------c-----------------c--c-cchhHHHHHHHHHHHhhcCcccccc
Q 009108 423 SLSFTWKVL-----------------------A-----------------P--Y-SGTLAVLGTVLYVLSFSLGAGPVPA 459 (543)
Q Consensus 423 ~~~~~~~~~-----------------------~-----------------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (543)
++....... . . . .....+++-++.+.+. ....+...
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~-~~~~~~~~ 194 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA-TPIFPLGI 194 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC-CcchhcCc
Confidence 765321000 0 0 0 0112223333333333 23456677
Q ss_pred cccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh----------------------ccccchhhhhHHHHHHH
Q 009108 460 LLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF----------------------GISTVYLGFATVCLLAV 517 (543)
Q Consensus 460 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~----------------------g~~~~~~~~~~~~~~~~ 517 (543)
+++.|.+|++.|+.+.|+.+....+|..+|+.+.+.+.+.+ +|+..|++.+++.++.+
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999887643 14445666666666655
Q ss_pred Hhhhe
Q 009108 518 LYIAV 522 (543)
Q Consensus 518 ~~~~~ 522 (543)
+..++
T Consensus 275 v~l~~ 279 (633)
T TIGR00805 275 IPFFF 279 (633)
T ss_pred HHHHh
Confidence 44433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-08 Score=97.26 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=120.4
Q ss_pred HHhhhhHHHHHHHcC-CCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh-hhHHHHH
Q 009108 121 GVVNGALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMI 198 (543)
Q Consensus 121 ~~~~~~~~~i~~~~~-~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~ 198 (543)
..+....+...++.| .+.+.. +.+.++..+.-.+.-.+.+++..|+|.|+++.++.+.+++=..+.++. ++.+...
T Consensus 224 ~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~ 301 (400)
T PF03825_consen 224 AAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIV 301 (400)
T ss_pred HHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 333334555566776 566666 777777778888888999999999999999999999999988888887 5554433
Q ss_pred H----HHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHH-HHHHHHHHHHhhcccCCCC-----CchHHHHHHhH
Q 009108 199 I----GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNP-----LWWRTMFGLAA 268 (543)
Q Consensus 199 ~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~l~~~~-----~~wr~~f~~~~ 268 (543)
+ ...++|+..+..+.+...++.+..|++.|+++.+++.+. .++|..+|.+++|++.+.. ..|...+.+.+
T Consensus 302 ~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a 381 (400)
T PF03825_consen 302 ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFA 381 (400)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 3 345699999999999999999999999999999998764 6899999999999998651 23555666666
Q ss_pred HHHHHHHHHh
Q 009108 269 IPSILLALGM 278 (543)
Q Consensus 269 ~~~~~~~~~~ 278 (543)
+..++..+++
T Consensus 382 ~~~~~~~~~f 391 (400)
T PF03825_consen 382 VMALVILVLF 391 (400)
T ss_pred HHHHHHHHHH
Confidence 6555544433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-08 Score=96.78 Aligned_cols=136 Identities=10% Similarity=-0.029 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 356 AGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
........+.|.+.++++.+.... ......++..++.++.|++.||+|||+.+..+..+.+++.+++..... .
T Consensus 40 ~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-----a 114 (438)
T PRK10133 40 VANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----I 114 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence 335667777888888888887655 556678899999999999999999999999999999988877532211 0
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV 497 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 497 (543)
.+....++..++.+.+.+.. .+....++.|..|++.++..+++.+....+|..+++.+.+.+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233444445555554433 3333446667777776667899999999999999998876544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-09 Score=99.26 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccc
Q 009108 378 VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPV 457 (543)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (543)
+.++....+..++..++.|.+.||+|+|..+++|+.++....+++++.. +.+..+++-.+=+.+... ....
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--------sy~~l~vAR~LQgvgsA~-~~ts 179 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--------SYPMLFVARSLQGVGSAF-ADTS 179 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--------hhHHHHHHHHHhhhhHHH-HHhh
Confidence 4467777889999999999999999999999999999999998888752 233445555555555443 3344
Q ss_pred cccccccccChhh-hhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCC
Q 009108 458 PALLLPEIFASRI-RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 530 (543)
Q Consensus 458 ~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (543)
..+++++.+|.+. |++++|+...+..+|-.+||++.|.+++..|++.+|+++++++++...+.++.++.++.+
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 5558889998765 699999999999999999999999999999999999999999999888776666544433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-09 Score=103.34 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhcc
Q 009108 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222 (543)
Q Consensus 143 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 222 (543)
.|.+.++..+.-++...+..++.+|+|.|+.++++..++++=-++++++++.+.+.+.+.+.|+-.+........++++.
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhHHH-HHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcc
Q 009108 223 SPTEIRGALGSVN-QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (543)
Q Consensus 223 ~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 280 (543)
+|++..++...+. +...++|..+.+.++|.+.|+ .|.+.+|++.+.+.+...+...+
T Consensus 341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-IGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-cCcHHHHHHHHHHHHHHHHHhee
Confidence 9998777777664 677889999999999999877 89999999988887765554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-08 Score=97.16 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 356 AGINAVVYYSTSVFRSVGIESDVAASAL-VGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
+..+.+..+.+.+.++++++........ .+.......++.|++.||+|+|+++.++.++..++.+++++...... ..
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i--~~ 118 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI--EG 118 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc--cC
Confidence 3345666778888888898877652211 22223345567899999999999999999999999988877522100 01
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHH
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCL 514 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 514 (543)
+.+...+..++.+.+.+. ..+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.+++.+
T Consensus 119 s~~~l~l~r~l~G~G~~~-~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~ 195 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCML-FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFAL 195 (591)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 222233333333333322 22223335667787 669999999999999999875555555443 345667777777766
Q ss_pred HHHHhhheecc
Q 009108 515 LAVLYIAVNVV 525 (543)
Q Consensus 515 ~~~~~~~~~~~ 525 (543)
+..++.+.+.+
T Consensus 196 vv~ll~~~~vr 206 (591)
T PTZ00207 196 VVGILAIVFMR 206 (591)
T ss_pred HHHHHHHhhee
Confidence 66555555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-08 Score=92.54 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHcCCCchh-H--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDV-A--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 434 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
=...++-.+++.+++|++... . .......+..+..+.+|+++||+|.|+++..+.+...+..+++.+..
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-------- 113 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-------- 113 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 455666677777889988877 3 66777788999999999999999999999999988888888887751
Q ss_pred cchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccc
Q 009108 435 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTV 505 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~ 505 (543)
+.....+.-++++.+-+... ....++...+|+++|+++.|+.+....+|.++++++.+. ...+||+..
T Consensus 114 Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 22334444555555555444 555688999999999999999999999999999999999 556776654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.4e-06 Score=79.83 Aligned_cols=266 Identities=9% Similarity=0.008 Sum_probs=153.0
Q ss_pred hHHHHHHHcCCC-----cchhhHHHHHHHHHHHHHHH-HHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh----h---
Q 009108 126 ALEYLAKDLGIA-----ENTVLQGWIVSSLLAGATVG-SFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA----Q--- 192 (543)
Q Consensus 126 ~~~~i~~~~~~s-----~~~~~~g~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~--- 192 (543)
++-.+++.+.++ .+.+ .++-+...+...+. .++.+++++|++|++++-+....+....+++++. +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i--~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEII--PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred HHHhhhhheeecccCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 566777777663 2345 88888887776666 8999999999999999988888877777666654 1
Q ss_pred ------------------------hHHHHHHHHHHHhhhcccccc-chhhhhhccCCcccchhhhHHHHHHHHHHHHHHH
Q 009108 193 ------------------------SVQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (543)
Q Consensus 193 ------------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 247 (543)
+.|...+..+...+....... .-..++.|.++.+|-.|..++++.+.++|.++++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg 182 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG 182 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444554444444 5667899999999999999999999999999999
Q ss_pred HhhcccC-------CCCCchH----HHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHH
Q 009108 248 VAGLPLA-------GNPLWWR----TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLD 316 (543)
Q Consensus 248 ~~~~~l~-------~~~~~wr----~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+..++. .....|. +.+.+.++.+++...+..++.+.. ..+.+.... + .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~~---------------~--~ 242 (472)
T TIGR00769 183 RTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYNP---------------A--L 242 (472)
T ss_pred HHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccch---------------h--h
Confidence 8877765 2223453 233333333333333332221110 000000000 0 0
Q ss_pred HHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH------HHHHHHHHHHH
Q 009108 317 LTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA------ASALVGAANVF 390 (543)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 390 (543)
.+++++.+..-.++++.++++|..+.+.+...++.......+ ..|-... ++...++... .....++..++
T Consensus 243 ~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve---~~~k~~v-~~~~p~~~~~~~f~g~~~~~~gi~tl~ 318 (472)
T TIGR00769 243 KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVE---VTWKSKL-KAQYPSPNEYSAFMGDFSTWTGVVSVT 318 (472)
T ss_pred ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111123456677888877766655555444322211 1122222 2222233211 23344566666
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHHHH
Q 009108 391 GTAVASSLMDRQGRKNLLTFSFTGMAA 417 (543)
Q Consensus 391 ~~~~~g~l~d~~g~~~~~~~~~~~~~~ 417 (543)
..++.+++.+|+|-+....+.-++..+
T Consensus 319 ~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 319 MMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 677779999999987766665554444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.5e-08 Score=94.32 Aligned_cols=179 Identities=15% Similarity=0.069 Sum_probs=112.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhh----ccCChhHHHHH-HHHHHHHHH
Q 009108 348 ALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMD----RQGRKNLLTFS-FTGMAASML 420 (543)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~ 420 (543)
......++. +.....+.+.+++.+|.+.... ......+.+++..++.|+++| |+|||+.++.. ....+++++
T Consensus 11 ~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ 89 (477)
T TIGR01301 11 SVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVI 89 (477)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 333333443 4555556666778888877644 556667888999999999999 59999988765 444445555
Q ss_pred HHHHHHhhcc-----ccccc-c---hhHHHHHHHHHHHhhcCcccccccccccccChhhh--hHHHHHHHHHHHHHHHHH
Q 009108 421 LLSLSFTWKV-----LAPYS-G---TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR--AKAVALSLGMHWISNFVI 489 (543)
Q Consensus 421 ~~~~~~~~~~-----~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~ 489 (543)
++.+...... ..... . ...++...+.-........| ..+++.|..|+++| +.+.++.+...++|+.++
T Consensus 90 ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg 168 (477)
T TIGR01301 90 LIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLG 168 (477)
T ss_pred HHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5544211100 00000 0 11122222222222222233 45589999998755 689999999999999999
Q ss_pred HHhhHHH--HHhh-------------ccccchhhhhHHHHHHHHhhheecccCC
Q 009108 490 GLYFLSV--VNKF-------------GISTVYLGFATVCLLAVLYIAVNVVETK 528 (543)
Q Consensus 490 ~~~~g~~--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (543)
+.+.+.. .+.. +++..|.+.+++.+++.++..+..+|..
T Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 169 YAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 9888764 2222 3456788888888888888888877754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-09 Score=94.73 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccc
Q 009108 380 ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPA 459 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (543)
....+.+...+.++..|.++||+|||.++..|.+..++..++.+.. ... ..+...=+.++..-+...+..
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---------~~F-~afv~aR~l~Gi~kgnl~v~r 142 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---------RNF-AAFVLARFLGGIFKGNLSVIR 142 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHHhhhhccCchHHHH
Confidence 5566788999999999999999999999999999888877777664 122 222222334444455666777
Q ss_pred cccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 460 LLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 460 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
++++|++++++|+.+++.+++...+|.++||.+.|++..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 899999999999999999999999999999999999887
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=94.40 Aligned_cols=158 Identities=28% Similarity=0.448 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHcCCCc--chhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh
Q 009108 114 ILFGYHLGVVNGALEYLAKDLGIAE--NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA 191 (543)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~~s~--~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 191 (543)
+....+........+.+..+++.+. ... ++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA 89 (338)
T ss_pred HHHHHhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 3333556666678888888887665 356 999999999999999999999999999988888887766667777777
Q ss_pred hh--HHHHHHHHHHHhhhccccccchhhhhhccCCc-ccchhhhHHHHH-HHHHHHHHHHHhhcccCCC-CCchHHHHHH
Q 009108 192 QS--VQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQL-FICVGILAALVAGLPLAGN-PLWWRTMFGL 266 (543)
Q Consensus 192 ~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~-~~~wr~~f~~ 266 (543)
.+ .+.+++.|+++|++.+...+...+++.|++++ ++|+...+.... ...+|..+++.+++.+... ..+||+.|.+
T Consensus 90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
T COG0477 90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL 169 (338)
T ss_pred ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 76 99999999999999999999999999999998 678888888888 5778888888776665432 3579997766
Q ss_pred hHHHHHH
Q 009108 267 AAIPSIL 273 (543)
Q Consensus 267 ~~~~~~~ 273 (543)
.......
T Consensus 170 ~~~~~~~ 176 (338)
T COG0477 170 AALLGLL 176 (338)
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.8e-08 Score=96.80 Aligned_cols=138 Identities=25% Similarity=0.253 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhhhHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh
Q 009108 114 ILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (543)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 192 (543)
+.............+++.++ +|.+ +.. +++..++.++..++.+++++++||+|+|+.+..+.++.+++.++..+.+
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 33334444445566666665 4444 555 8888999999999999999999999999999999999999999988886
Q ss_pred --hHHHHHHHHHHHhhhccccccchhhhhhccCCcc-------cchhhhHHHHHHHHHHHHHHHHhhcccC
Q 009108 193 --SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA 254 (543)
Q Consensus 193 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 254 (543)
|.+.+++.-++.|++.+...+...++++|..+.+ +.|..++......-+|..+++.+.+.+.
T Consensus 312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988742 2388888888888888888887766553
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.7e-07 Score=81.26 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhh-----hhcccchhh-hhhHHHHHH
Q 009108 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQ-LDAVPLAAG 184 (543)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~d-----r~Grr~~~~-~~~~~~~i~ 184 (543)
+...+.+...+... .+|.+.+.-|+|.++. +...-+ +.-+ .--++|.++.| |+||||.-+ -+..+.+..
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~fS~a-y~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ 112 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIFSFA-YWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLF 112 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhhhhh-hhHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHH
Confidence 34456666677766 8999998888888776 433322 2222 23467999999 999988543 355555554
Q ss_pred HHHHHHh-----------hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhccc
Q 009108 185 AFLCATA-----------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (543)
Q Consensus 185 ~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 253 (543)
+.+.+.. ++...+....++.-+.++.--.+.-.+.-....+++.|.+......+...|..++..+.-.+
T Consensus 113 mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 113 MLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred HHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEe
Confidence 4444432 34444545556666777766677777888888899999999998888888888876665444
Q ss_pred C
Q 009108 254 A 254 (543)
Q Consensus 254 ~ 254 (543)
.
T Consensus 193 ~ 193 (510)
T KOG3574|consen 193 E 193 (510)
T ss_pred c
Confidence 3
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-08 Score=84.40 Aligned_cols=357 Identities=18% Similarity=0.151 Sum_probs=185.0
Q ss_pred HhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHH
Q 009108 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR 201 (543)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r 201 (543)
..+|.+-++-++++....++ |.+.-+-+....++..+.|.++|+-|||+.-+.-++...+++ +.-.++.|-.++++|
T Consensus 55 LQgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR 131 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGR 131 (454)
T ss_pred hcCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehh
Confidence 33556667778888888888 888888888888889999999999999997655444444332 233468899999999
Q ss_pred HHHhhhccccccchhhh-hhccCCcccchhh-------hHHHH-HHHHHHHHHHHHhhcccCCC-CCchHHHHHHhHHHH
Q 009108 202 VLAGIGIGISSAIVPLY-ISEISPTEIRGAL-------GSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPS 271 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~-i~~~~~~~~r~~~-------~~~~~-~~~~~G~~~~~~~~~~l~~~-~~~wr~~f~~~~~~~ 271 (543)
.+.|+..+..+.+--++ +.|.-.+ |+.- ++-.. .+..+-.+++.+.+..+.+. ..|--.+|-..+.+.
T Consensus 132 ~LGGiaTsLLFSaFEsWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfL 209 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFL 209 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 99999999888876665 4555422 3211 11111 12222233444444443321 133334444333322
Q ss_pred HHH-HHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHH
Q 009108 272 ILL-ALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALF 350 (543)
Q Consensus 272 ~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (543)
.+. ++.+- .|-..-+++.+.++.+...... ...+..+++ ..+++ .+.
T Consensus 210 aigmAvil~------~W~ENygdps~~kdlltqf~ga-----------------------a~aiaSD~k--i~LLG-~iq 257 (454)
T KOG4332|consen 210 AIGMAVILS------SWSENYGDPSENKDLLTQFKGA-----------------------ARAIASDEK--IALLG-AIQ 257 (454)
T ss_pred HHHHHHHHh------hhhhccCChhhhHHHHHHhhHh-----------------------HHHHhcchH--HHHHH-HHH
Confidence 222 22221 1222223333333322221110 011111211 11222 222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCCh--hHHHHHHHHHHHHHHHHHHHHhh
Q 009108 351 LFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRK--NLLTFSFTGMAASMLLLSLSFTW 428 (543)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 428 (543)
.......+..+..|.|.+-.+-.--+.+..+..+.+..++|+-+..++..|-..| ..+.+.+.+.++.+.+.......
T Consensus 258 sLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~v 337 (454)
T KOG4332|consen 258 SLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSV 337 (454)
T ss_pred HHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333333444444555432111112334556666677788887777777664433 44555555554444444333322
Q ss_pred cccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH--hhccccch
Q 009108 429 KVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN--KFGISTVY 506 (543)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~--~~g~~~~~ 506 (543)
.+ ...+...-+++.+++-.+.+..+ |...-+-.+..|.+.|++.+-.+..--++...++-+.. -.+ ..+.+..|
T Consensus 338 sP-~kes~~~s~i~F~~~E~cvGlfw-PSimkmRsqyIPEearstimNfFRvPLnifvClvLynl--h~~~~p~~tr~mf 413 (454)
T KOG4332|consen 338 SP-SKESPSESLIGFCLFEACVGLFW-PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL--HVDAFPTTTRNMF 413 (454)
T ss_pred CC-CcCCchHHHHHHHHHHHHHhhcc-hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec--ccccCccccchhh
Confidence 21 22333444566666666665544 44444677888999888766655544443333321110 011 23445677
Q ss_pred hhhhHHHHHHHHh
Q 009108 507 LGFATVCLLAVLY 519 (543)
Q Consensus 507 ~~~~~~~~~~~~~ 519 (543)
.++.+...++.+.
T Consensus 414 ~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 414 GICSAFLFVASIL 426 (454)
T ss_pred hhhHHHHHHHHHH
Confidence 7777776666543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=82.89 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=101.3
Q ss_pred HHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH-HHHHHhhhHHHHHHHHHHHh
Q 009108 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA-FLCATAQSVQTMIIGRVLAG 205 (543)
Q Consensus 127 ~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~G 205 (543)
....++.||+|.... +.+.+....-.++.+++.|.++|++|++...+.+..+..+.. ....| +++.=+++..++|
T Consensus 288 ~~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lG 363 (459)
T KOG4686|consen 288 PMFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLG 363 (459)
T ss_pred HHHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHh
Confidence 346788999999888 899998888889999999999999999988877666555443 22222 3334446677788
Q ss_pred hhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009108 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (543)
Q Consensus 206 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 258 (543)
+..+.........++...|+++.|++.|..+...++|..+.|++++.+.+...
T Consensus 364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 88766555556677788899999999999999999999999999999987633
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.8e-08 Score=97.45 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=98.6
Q ss_pred hHHHH-HHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh--hHHHHHHHHH
Q 009108 126 ALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRV 202 (543)
Q Consensus 126 ~~~~i-~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~ 202 (543)
..|++ ++.+|.+.... ++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..+
T Consensus 250 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA 327 (448)
T ss_pred hheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 44443 34466554333 4444445677888999999999999999999999999888887777653 6777777888
Q ss_pred HHhhhccccccchhhhhhccCCcc-------cchhhhHHHHHHHHHHHHHHHHhhcccC
Q 009108 203 LAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA 254 (543)
Q Consensus 203 l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 254 (543)
+.|+|.+...+...++..|..+.+ ++|..+++.+....+|..+++.+.+.+.
T Consensus 328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888754 3488899999999999988888776653
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-07 Score=85.81 Aligned_cols=133 Identities=16% Similarity=0.033 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 223 (543)
+.+.-+-.+...+.-+.+.++.+|+.-+.=.....+++.++.++.+++++.+.=+++-++.+++.|........+. ..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-Hhc
Confidence 3455555666677777888889988755545666678888899999999999988899999999888777777664 455
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
++ ...+-+..+.+.++++|+..-..+......-|..+++...+.++..+..+++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 3567777788878888877655554322445777777776665555544443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=91.43 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=123.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCchhH--HHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHH
Q 009108 338 RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--ASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFT 413 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 413 (543)
+.++.++..=..--+.+++.-..+.+|+.+-.. .+|+++..+ .+..+..-.-+..+++||++|| +|+|+.+..+.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 333333333333344444444455555444332 134766655 3344444445577899999999 699999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChh--hhhHHHHHHHHHHHHHHHHHHH
Q 009108 414 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--IRAKAVALSLGMHWISNFVIGL 491 (543)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~ 491 (543)
+++++.+++.... ........+.+.++..+.+ ..=+....++.|++|++ +|-.++++.+...++|+.++|.
T Consensus 101 l~~iGh~~L~~~~------~~~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 101 LMAIGHLVLAISS------VSGPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHHHhccc------cccccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 9999999998742 0122344455555554443 34456666889998744 3677899999999999999999
Q ss_pred hhHHHHHhhccccchhhhhHHHHHHHHhhheecc
Q 009108 492 YFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 492 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
+.+++.+..||...|...++-..++.+..++..+
T Consensus 174 i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999988888888776665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.4e-07 Score=81.43 Aligned_cols=156 Identities=17% Similarity=0.063 Sum_probs=122.9
Q ss_pred HhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-cccchhhhhhHHHHHHHHHHHHhhhHHHHHHH
Q 009108 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG 200 (543)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 200 (543)
....-+|.+..|-|+|..+. |++.+...+......+....+.+|. .+|+..+...+++.++.+.+.+.+....++.
T Consensus 226 ~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw- 302 (395)
T COG2807 226 IVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW- 302 (395)
T ss_pred HHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence 33447899999999999999 9999999999999999999999976 4777778888888888888878765544444
Q ss_pred HHHHhhhccccccchhhhhhccCCcccc-hhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 201 RVLAGIGIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 201 r~l~G~~~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
-+++|+|.|..++.+..++.+..+..++ ++..++.+....+=...||.+.|++.|...+|+..++..+...++..+.-+
T Consensus 303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999999988775543 444444444444445678999999988888999999888877776665543
Q ss_pred c
Q 009108 280 L 280 (543)
Q Consensus 280 ~ 280 (543)
.
T Consensus 383 ~ 383 (395)
T COG2807 383 R 383 (395)
T ss_pred h
Confidence 3
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-07 Score=90.67 Aligned_cols=141 Identities=14% Similarity=0.068 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCccccc
Q 009108 379 AASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVP 458 (543)
Q Consensus 379 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (543)
........+.+++.+.+|++.||+|.|+++..+.++.+++.++....... ..+..++.-++-|.+.+. ..|..
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~~~~~~R~lqGl~~g~-~~pa~ 149 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------GFYLLLVLRFLQGLGQGV-LFPAI 149 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------cchhhHHHHHHhHHHHhH-HHhhh
Confidence 35667789999999999999999999999999999999988888876442 223344445555555543 34555
Q ss_pred ccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh-hccccchhhhhHHHHHHHHhhheeccc
Q 009108 459 ALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK-FGISTVYLGFATVCLLAVLYIAVNVVE 526 (543)
Q Consensus 459 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
..+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|.+.+++.++..++.+++..+
T Consensus 150 ~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 150 GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 55888999999999999999999999999999999999998 999999999999998887766655543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=94.10 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=96.3
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH-----hhhHHHHH
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQSVQTMI 198 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~ 198 (543)
....+++.+....+.+.. +++.++..++..++.+++++++||+|+|+.+.++.++..++.+...+ ..+.+.++
T Consensus 251 ~~~~~y~~~y~~~~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
T PRK10429 251 NGFAIYYFTYVIGDADLF--PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIV 328 (473)
T ss_pred hhheeeEEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH
Confidence 334445544443344444 77777777888999999999999999999999888877766655432 34567777
Q ss_pred HHHHHHhhhccccccchhhhhhccCCc-------ccchhhhHHHHHHHHHHHHHHHHhhcccC
Q 009108 199 IGRVLAGIGIGISSAIVPLYISEISPT-------EIRGALGSVNQLFICVGILAALVAGLPLA 254 (543)
Q Consensus 199 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 254 (543)
+.-++.|++.+...+...++++|..+. ++.|..++......-+|..+++.+.+++.
T Consensus 329 i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 329 IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999998888888999988652 22366888888888888888887776654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-08 Score=92.77 Aligned_cols=164 Identities=19% Similarity=0.163 Sum_probs=138.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhh
Q 009108 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS 193 (543)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~ 193 (543)
+..+...+.+...+=.-.||++..+.-. |........|-.+.-++.+++.+++|+-+++.+++.+..+=.+..++.+|
T Consensus 381 v~mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n 458 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN 458 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC
Confidence 3334434433334445567788666666 88888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHH-HHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHH
Q 009108 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 194 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~ 272 (543)
.|..+...+++|+..+..+.++.+|+++..|++.|..+.++.... .++|-.+|.++||.+... .|=|..|.+.++.++
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-fg~~ttf~~~giAcl 537 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-FGARTTFRIFGIACL 537 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-ehhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987654 678889999999998876 788999999988887
Q ss_pred HHHHHhcc
Q 009108 273 LLALGMGL 280 (543)
Q Consensus 273 ~~~~~~~~ 280 (543)
+.++....
T Consensus 538 ~~l~~~~~ 545 (618)
T KOG3762|consen 538 VTLALFIS 545 (618)
T ss_pred HHHHHHHH
Confidence 76655444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=68.35 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=74.7
Q ss_pred HHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHH
Q 009108 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ 195 (543)
Q Consensus 116 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 195 (543)
.++.+..+.|++|.+++|.++|.++. |++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 45667788999999999999999999 9999999999999999999999998899999999999999999999998887
Q ss_pred HHH
Q 009108 196 TMI 198 (543)
Q Consensus 196 ~l~ 198 (543)
.+.
T Consensus 82 ~w~ 84 (85)
T PF06779_consen 82 LWS 84 (85)
T ss_pred HHh
Confidence 653
|
Note that many members are hypothetical proteins. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=94.41 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccc
Q 009108 380 ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPA 459 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (543)
...+..++..+|.++.|.++||+|||++++.+.++..++.++.++. .....+...=++.+.+..+...+..
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---------~~~~~~~~~Rfl~G~~~~~~~~~~~ 193 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---------PNYWMFLIFRFLSGFFGSGPLTVGF 193 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhccchhHHhH
Confidence 5566778999999999999999999999999999999998777775 2233333333333334445566677
Q ss_pred cccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccC
Q 009108 460 LLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 460 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
.+..|.++++.|+.+..+ ......++.+++.+.+++.. +|++.+++.....++..++ +++.+|.
T Consensus 194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 788999999999999999 88888899999999998887 7888888877777766555 4444444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=81.23 Aligned_cols=158 Identities=11% Similarity=0.001 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009108 359 NAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSG 436 (543)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (543)
.......|.+.+.++.+.... .......+..+..+..+++.+|+|+|+.++.++.+++++++++.-.... ...
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-----~~y 104 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-----KSY 104 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh-----hhH
Confidence 344455666666677766654 4555667788899999999999999999999999999999998643221 112
Q ss_pred hhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh-----------------
Q 009108 437 TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK----------------- 499 (543)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~----------------- 499 (543)
...+.++++.+.+.+. .-...+.++..+.+++....-+.+...+..+|++++|.+.+.+..+
T Consensus 105 ~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~ 183 (422)
T COG0738 105 GFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGA 183 (422)
T ss_pred HHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 2233333333333332 2334445888888888888899999999999999999999998873
Q ss_pred --hccccchhhhhHHHHHHHHhhhe
Q 009108 500 --FGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 500 --~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
..++.++...+..+++..+....
T Consensus 184 ~~~~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 184 DASSVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 12566777777776666555443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-07 Score=80.97 Aligned_cols=368 Identities=14% Similarity=0.087 Sum_probs=208.8
Q ss_pred HcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccc
Q 009108 133 DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISS 212 (543)
Q Consensus 133 ~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 212 (543)
+.|++.++.. .-+.-...-.+.+.-.+.=.+.|-.--|++++.-.+...+.-.+.-+.++.+.+=+.-++.|...+ ..
T Consensus 35 ~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 35 DKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 4455554441 222233334445555677788999999999998888888888888899999999999999999876 55
Q ss_pred cchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC-CCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhc
Q 009108 213 AIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQ 291 (543)
Q Consensus 213 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 291 (543)
.+-++++-+..+++++.++.+...+..-.|...|..++-.+... ..++...-.+......+..+..+++|..++....+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 67788999999999999999999888888888887777666532 23455555555555555566677777666543333
Q ss_pred CChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009108 292 GKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS 371 (543)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (543)
+++++.. ..+....+. +....+... ..-..-...+.+..+++.... ..+++....+++..+.+|...+-++
T Consensus 193 ~~~~~~~--v~~~e~~~~-~~~~~~~l~--~~~~~l~~~l~~~y~np~ll~----WSlWwAl~scg~~QV~nY~Q~LW~~ 263 (433)
T KOG3810|consen 193 RLEDKIS--VGDLEEMNP-QASYMSYLR--GAFVLLWRDLQECYSNPRLLK----WSLWWALASCGYYQVTNYTQILWKE 263 (433)
T ss_pred cccccce--eccchhcCc-cchhhHHHH--HHHHHHHHHHHHHhcCchhhh----hHHHHHHhhchhHHHHHHHHHHHHh
Confidence 2222111 000000000 000000000 000000112223334443222 2334444455677888888887777
Q ss_pred cCCCchhH----HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHH
Q 009108 372 VGIESDVA----ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 447 (543)
Q Consensus 372 ~~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (543)
...++... .=.+..+.++++.+..|++.-.+.|..-+.++..-...+.+++... ...+.++..+...++.
T Consensus 264 ~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~------~t~~Iw~~Ya~yvlfr 337 (433)
T KOG3810|consen 264 VAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA------QTQHIWVCYAGYVLFR 337 (433)
T ss_pred hCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh------cccceehhhhhHHHHH
Confidence 65333322 2233456677788888888777666533333222222222222221 1124556666666666
Q ss_pred HHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-----------cccchhhhhHHHHHH
Q 009108 448 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-----------ISTVYLGFATVCLLA 516 (543)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g-----------~~~~~~~~~~~~~~~ 516 (543)
..+......... -+++....+.-|..+|+..++.-+-..+-..+ +.|..| |..-|.+.+++.++.
T Consensus 338 ~~y~l~itiA~~-~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~ 413 (433)
T KOG3810|consen 338 VIYQLTITIATF-QIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIG 413 (433)
T ss_pred hhHhhhhhHHHH-HHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHH
Confidence 666654433333 44555566778888888877655544433332 334333 334567777777777
Q ss_pred HHhhh
Q 009108 517 VLYIA 521 (543)
Q Consensus 517 ~~~~~ 521 (543)
..+.+
T Consensus 414 ~~~~~ 418 (433)
T KOG3810|consen 414 FGIEY 418 (433)
T ss_pred HHHHH
Confidence 66543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.8e-07 Score=90.35 Aligned_cols=139 Identities=18% Similarity=0.160 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccc
Q 009108 378 VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPV 457 (543)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (543)
........++..++.++.|+++|++|||+.++.+.++..++.++..++. +.....++-++.+.+.+... .+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--------~~~~l~~GR~l~G~g~G~~~-~~ 162 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--------SWYQLIVGRILTGLGVGGAS-VL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHhccchhhhh-hc
Confidence 3566777899999999999999999999999999999999999998862 34556666667666665444 34
Q ss_pred cccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh--ccccchhhhhHHHHHHHHhhheecccC
Q 009108 458 PALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF--GISTVYLGFATVCLLAVLYIAVNVVET 527 (543)
Q Consensus 458 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (543)
...+.+|..|++.||...+..+....+|..++ .+.+...++. +|+..+.+..+.+++..+. .++.||.
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 44589999999999999999999999777776 6666666554 7887777777777666665 5556654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-07 Score=90.07 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccccccchhhhhhc
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 221 (543)
+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777888888999999999999999998888776654443333 3577778888899999999999999999998
Q ss_pred cCCc-------ccchhhhHHHHHHHHHHHHHHHHhhcccC
Q 009108 222 ISPT-------EIRGALGSVNQLFICVGILAALVAGLPLA 254 (543)
Q Consensus 222 ~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 254 (543)
..+. ++.|..++.......+|..+|+.+++.+.
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8752 22366778888888889888888877654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.7e-07 Score=87.48 Aligned_cols=141 Identities=14% Similarity=0.027 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccc
Q 009108 380 ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPA 459 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (543)
....+.++.+++.+.++.+.||++..+.+....+...+..++.... ++.+..++.-++.+.+- .+..|...
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--------~s~~~~ialr~llGl~e-s~~wP~~~ 156 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--------HSFPGLIALRFLLGLFE-SGGWPGVV 156 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHh-cccchHHH
Confidence 6677889999999999999999996555544443333333222221 12233344444444444 45555666
Q ss_pred cccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH------hhccccchhhhhHHHHHHHHhhheecccCCC
Q 009108 460 LLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN------KFGISTVYLGFATVCLLAVLYIAVNVVETKG 529 (543)
Q Consensus 460 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (543)
.++...+.+++|+..+|+.++..++|+++|+.+...+.. ..||++.|++-+++.++..++.++++|+...
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 689999999999999999999999999999999888643 4579999999999999998888888876543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=81.98 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=125.3
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhh-hhcccchhhhhhHHHHHHHHHHH---HhhhHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGR 201 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r 201 (543)
+-|+=.+-||++..+. ..+.+....|..++....|++.. |.++++...+++.+..++..+.. ...+.+.+...-
T Consensus 231 LEPygg~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~ 308 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV 308 (403)
T ss_pred cCCchhHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 5566677899999999 99999999999999999999888 67888888888888777765543 447888899999
Q ss_pred HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC---------CCCchHHHHHHhHHHHH
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NPLWWRTMFGLAAIPSI 272 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---------~~~~wr~~f~~~~~~~~ 272 (543)
++.|++.|.......+.+.+...+++.|.++|.+.....++..++..+++.+.| ...+|-..|.+.++..+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~ 388 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL 388 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999999999988888888876543 23567888888877776
Q ss_pred HHHHHh
Q 009108 273 LLALGM 278 (543)
Q Consensus 273 ~~~~~~ 278 (543)
+.+++.
T Consensus 389 ~a~~ll 394 (403)
T PF03209_consen 389 AALVLL 394 (403)
T ss_pred HHHHHH
Confidence 655544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=8e-07 Score=79.43 Aligned_cols=143 Identities=16% Similarity=0.099 Sum_probs=97.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 009108 352 FQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWK 429 (543)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (543)
....+..+.+..|.+.+.+.++++..+. ......++..+ .++.|.+.|++|++.++.++.+...++..++.......
T Consensus 12 ~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 12 QLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred HHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3344556788899999999999988876 33444556555 48889999999999999999999999998887654321
Q ss_pred ccccccchhHHHHHHHHHHHhhcCc-ccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009108 430 VLAPYSGTLAVLGTVLYVLSFSLGA-GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 499 (543)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 499 (543)
. + ....+....+.+..+.+..+ .........+.+|. .||++.|+.-....+++.+...+...+.+.
T Consensus 91 i--~-~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 91 I--P-SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred c--C-ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1 1 12223333333333333222 22222234477885 699999999999999998888887776655
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-07 Score=86.51 Aligned_cols=179 Identities=15% Similarity=0.055 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhH------HHHHHHH-HHHHHHHHHhhHhhhhhhcccchhhhh
Q 009108 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ------GWIVSSL-LAGATVGSFTGGSLADKFGRTRTFQLD 177 (543)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~------g~~~s~~-~l~~~i~~~~~g~l~dr~Grr~~~~~~ 177 (543)
.+...+...|+........+.....+.+++++.+.+... .....+. .+++..+-.+...+.|++|||++.+.+
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G 384 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG 384 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence 344556666766666666666778888888876555411 1111111 223333666778899999999999999
Q ss_pred hHHHHHHHHHHHHhhhH----HHHHH----HHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHh
Q 009108 178 AVPLAAGAFLCATAQSV----QTMII----GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA 249 (543)
Q Consensus 178 ~~~~~i~~~~~~~~~~~----~~l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 249 (543)
.+++++..+..+...|. ..+++ ..++.-+| .......+-+|.||.+-|+..-|+..+..-.|.++|...
T Consensus 385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~ 461 (538)
T KOG0252|consen 385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFG 461 (538)
T ss_pred HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHH
Confidence 99999999999888661 11222 23333333 334556677999999999999999999999999999988
Q ss_pred hcccCCC----CCchHHHHHHhHHHHHHHHHHhcccCCChh
Q 009108 250 GLPLAGN----PLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (543)
Q Consensus 250 ~~~l~~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (543)
-.++.++ ..+.|+.|++.+..+++..+..+++||+..
T Consensus 462 F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 462 FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred hhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 8888761 278999999999999998888888998865
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-07 Score=92.84 Aligned_cols=123 Identities=9% Similarity=0.037 Sum_probs=107.0
Q ss_pred HHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh----------hhHHHHHHHH
Q 009108 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA----------QSVQTMIIGR 201 (543)
Q Consensus 132 ~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~r 201 (543)
+.+|.++... |.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-
T Consensus 281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 5689999998 999999999999999999999999999999999999999887554311 3444555667
Q ss_pred HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC
Q 009108 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 256 (543)
++.+++.+..+.+...++.+..|+++++...++.....++|..+++.+++.+.+.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999988887653
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.8e-05 Score=74.85 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=122.0
Q ss_pred HHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-cccchhhhhhHHHHHHHHHHHHhhh------
Q 009108 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQS------ 193 (543)
Q Consensus 121 ~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~------ 193 (543)
+....++.++.++++.+.... .-..+.+.-...+..+++++++|-| ||-+.+.++.++..++.++..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p 132 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP 132 (571)
T ss_pred cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 344668889999999888766 8888888888889999999999965 8889999998888888655544321
Q ss_pred -------------------HHHHHHHHHHHhhhccccccchhhhhhccCC---cccc---hhhhHHHHHHHHHHHHHHHH
Q 009108 194 -------------------VQTMIIGRVLAGIGIGISSAIVPLYISEISP---TEIR---GALGSVNQLFICVGILAALV 248 (543)
Q Consensus 194 -------------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~~G~~~~~~ 248 (543)
...++.+.-+..+|.|+.-+...++-+|-++ ++++ ...+.++....++|..++..
T Consensus 133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t 212 (571)
T KOG1237|consen 133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT 212 (571)
T ss_pred ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence 1246666778888999999999999999998 3222 36788888899999999888
Q ss_pred hhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 249 ~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
+..+.-++ .+|.+-|.+..+..++.+++++
T Consensus 213 ~~vyiq~~-~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 213 VLVYIQDN-VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHhhhhc-ccceeeccHHHHHHHHHHHHHH
Confidence 88777655 8999999888877766554433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-05 Score=66.46 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 223 (543)
-.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-++.|++.+..+++...++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 44566677777888899999999999999999999998865443 35678889999999999999999999999999999
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHhhccc
Q 009108 224 PTEIRGALGSVNQLFICVGILAALVAGLPL 253 (543)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 253 (543)
++++|++..+++......+.++|.++...+
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888887765443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-09 Score=104.98 Aligned_cols=156 Identities=16% Similarity=0.090 Sum_probs=100.2
Q ss_pred hhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH--H--h-hh-----H
Q 009108 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--A-QS-----V 194 (543)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~-~~-----~ 194 (543)
...+.+.++.+.+.. . +......+...++.++...+.||+|||++++.+.++.+++.+..+ . . ++ +
T Consensus 274 ~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 274 YYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 355677777777765 2 112222334445666777999999999999999999888887764 1 1 11 2
Q ss_pred HHHHHHHHHHhhhcc-ccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHH
Q 009108 195 QTMIIGRVLAGIGIG-ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (543)
Q Consensus 195 ~~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~ 273 (543)
..+. +-.+..++.+ +..+....+..|.+|.+.|+++.++......++..+++.+...+.+. .+-...+++.+..+++
T Consensus 350 ~~i~-~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~i 427 (451)
T PF00083_consen 350 LSIV-FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-LGGWGVFLIFAGVCLI 427 (451)
T ss_pred ccce-eeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchhhHHHHHH
Confidence 2222 2222222222 34456668889999999999999999998888888888877766654 3313344444444444
Q ss_pred -HHHHhcccCCChh
Q 009108 274 -LALGMGLSPESPR 286 (543)
Q Consensus 274 -~~~~~~~~~e~~~ 286 (543)
..+..+++||+..
T Consensus 428 ~~i~~~~~lpET~g 441 (451)
T PF00083_consen 428 AIIFVYFFLPETKG 441 (451)
T ss_pred HHhheeEEEeeCCC
Confidence 4455666799864
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-05 Score=79.76 Aligned_cols=136 Identities=21% Similarity=0.176 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCccccccccccc
Q 009108 385 GAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPE 464 (543)
Q Consensus 385 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (543)
++..++..+..|.++||+|||..+........+..+.+.+.. ++.++ ..-..+..........++++|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----------~~~~~--~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----------YWFFL--LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----------HHHhh--hcccccchhhhhhhhhhheee
Confidence 577788899999999999999999888888777777776631 22222 111122222344556668999
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCCCH
Q 009108 465 IFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSL 532 (543)
Q Consensus 465 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (543)
....+.|....|+.+.....+..++|.+.+.+....|+..+|.+..+..++..+....+.||+..++.
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 99999999999999999999999999999999999999999999999999998888888888755443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-05 Score=71.56 Aligned_cols=158 Identities=19% Similarity=0.147 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 009108 364 YSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVL 441 (543)
Q Consensus 364 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (543)
|.-.++++.|++..+. .+....+...+...+.|.++||+|||+.-+...++..++++.-... +....++
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~---------~~~~L~~ 126 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS---------NYPVLLL 126 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc---------ccHHHHH
Confidence 3334456788876655 4555556777888899999999999998888888888877654331 2344444
Q ss_pred HHHHHHHHhhcCcccccccccccc----cChhhhhHHHHHHHHH-HHHHHHHHHHhhHHHHHhhcc--ccchhhhhHHHH
Q 009108 442 GTVLYVLSFSLGAGPVPALLLPEI----FASRIRAKAVALSLGM-HWISNFVIGLYFLSVVNKFGI--STVYLGFATVCL 514 (543)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~~~~~~g~--~~~~~~~~~~~~ 514 (543)
+-++-+...+......=..++.|. +|++..+...+..... +.+-++++..+...+.+..+. ..+|....++++
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~ 206 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLA 206 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 445544444433333322244444 4666666666655533 344455555666666776654 678888888888
Q ss_pred HHHHhhheecccCCCC
Q 009108 515 LAVLYIAVNVVETKGR 530 (543)
Q Consensus 515 ~~~~~~~~~~~~~~~~ 530 (543)
++.+++....+|..+.
T Consensus 207 ~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 207 VAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHhcccccCCC
Confidence 8887777666766543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-05 Score=77.12 Aligned_cols=126 Identities=13% Similarity=0.045 Sum_probs=78.7
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh--hHHHHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVL 203 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l 203 (543)
...++.+...-+++.. +++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +.+.+++.-++
T Consensus 250 ~~~y~~~y~~g~~~~~--~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (460)
T PRK11462 250 AMMYYVTWILGTPEVF--VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFV 327 (460)
T ss_pred HhhhhhhhhcCChHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 4444444443333334 6778888899999999999999999999987765555544444433332 23334455566
Q ss_pred HhhhccccccchhhhhhccCCc-------ccchhhhHHHHHHHHHHHHHHHHhhccc
Q 009108 204 AGIGIGISSAIVPLYISEISPT-------EIRGALGSVNQLFICVGILAALVAGLPL 253 (543)
Q Consensus 204 ~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l 253 (543)
.|++.+...+...+++.|..+. ++.|..++......-+|..+++.+++++
T Consensus 328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7877776666666677766552 2225555666666666666666555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=77.70 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=96.6
Q ss_pred hhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhh--hHHHHHHHH
Q 009108 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGR 201 (543)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r 201 (543)
+....+.. +++++..+....+.......+..++.+++.++++|+|+|+++.++.++..++.++..+.+ +.+.+++..
T Consensus 256 ~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~ 334 (467)
T COG2211 256 GSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVAL 334 (467)
T ss_pred hhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHH
Confidence 33444433 234444444447788888888888899999999999999999999999999999888875 788888999
Q ss_pred HHHhhhccccccchhhhhhccCCc------ccc-hhhhHHHHHHHHHHHHHHHHhhcc
Q 009108 202 VLAGIGIGISSAIVPLYISEISPT------EIR-GALGSVNQLFICVGILAALVAGLP 252 (543)
Q Consensus 202 ~l~G~~~g~~~~~~~~~i~~~~~~------~~r-~~~~~~~~~~~~~G~~~~~~~~~~ 252 (543)
++.+++.+...+...++++|..+- ++| |...+......=+|..++..+.++
T Consensus 335 ~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 335 IIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888876643 222 666666666666666666544444
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.5e-05 Score=78.77 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=100.1
Q ss_pred HHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHH
Q 009108 366 TSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLG 442 (543)
Q Consensus 366 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (543)
.++.+.++++.... .........-+..+++|+++|+ +|+++.+.++.++..++.+++.+...............+++
T Consensus 12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 33334467666544 3334444555677889999997 79999999999998888887776422111000011122333
Q ss_pred HHHHHHHhhcCcccccccccccccChh---hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh-------ccccchhhhhHH
Q 009108 443 TVLYVLSFSLGAGPVPALLLPEIFASR---IRAKAVALSLGMHWISNFVIGLYFLSVVNKF-------GISTVYLGFATV 512 (543)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~-------g~~~~~~~~~~~ 512 (543)
+.+..+|.+ +.-+...+...|.++++ .+-....+++...++|+.+++.+.+++.+.. +|...|.+.+++
T Consensus 92 LaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~ 170 (654)
T TIGR00926 92 LALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAIL 170 (654)
T ss_pred HHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence 333333333 34455555777777643 4678899999999999999999999887543 476777777777
Q ss_pred HHHHHHhhhe
Q 009108 513 CLLAVLYIAV 522 (543)
Q Consensus 513 ~~~~~~~~~~ 522 (543)
.+++.++...
T Consensus 171 m~ia~lvf~~ 180 (654)
T TIGR00926 171 MILALIVFMA 180 (654)
T ss_pred HHHHHHHHHH
Confidence 7777665543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=57.35 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH
Q 009108 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (543)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (543)
..+......+.+.|.+|...++.|++..++ |.+.++..+...++++++|.++||+++++..+....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 345555556677778888888899999999 99999999999999999999999999998877765544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.3e-05 Score=73.51 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH--cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhh-----hhcccchhhh-hhHH
Q 009108 109 ACLGAILFGYHLGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQL-DAVP 180 (543)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~d-----r~Grr~~~~~-~~~~ 180 (543)
+.+..++.+...+.....+|.+.++ -+++.++. |.. |.-..-+.+ -++|.++.| |+||||.-++ .-.+
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~f-Sla~~PfSl-KlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AIF-SLASYPFSL-KLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHh--eee-eeeechhHH-HHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 3455667777777755688998888 67887776 432 222222221 345666666 8999986543 2233
Q ss_pred HHHHHHHHHHhh------------------------hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHH
Q 009108 181 LAAGAFLCATAQ------------------------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ 236 (543)
Q Consensus 181 ~~i~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 236 (543)
.++..+..+... +...+....++.=+-++.--.++-.+.-....+++++.|..-..
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 333333332211 11123333334444445444555666667778888999999999
Q ss_pred HHHHHHHHHHHHhhcccC
Q 009108 237 LFICVGILAALVAGLPLA 254 (543)
Q Consensus 237 ~~~~~G~~~~~~~~~~l~ 254 (543)
.+.+.|..++..+.-.+.
T Consensus 161 vG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALN 178 (544)
T ss_pred hHhhhhHHHHHHHHHhhC
Confidence 999999888877655544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00095 Score=64.43 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHcCCC---cchhhHHHHHHHHHH-HHHHHHHhhHhhhhhhcccchhhhhhHHHHH
Q 009108 108 VACLGAILFGYHLGVVNGALEYLAKDLGIA---ENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (543)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s---~~~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 183 (543)
.+.+..++..++.+ .+-.+.+.+.++ ++.+ .++-+...+ +..+..++.+++.+++.+++++-+.+..+..
T Consensus 31 pl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I--~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~ 104 (509)
T COG3202 31 PLALLFFCILFNYN----LLRSLKDSLVVTRQGAESI--SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLG 104 (509)
T ss_pred HHHHHHHHHHHHHH----HHHHhhhheEeecCcchhh--HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 33444444444444 556667777554 3344 777777777 7778889999999999999999888888888
Q ss_pred HHHHHHHh---------hh-----------------------HHHHHHHHHHHhhhcccccc-chhhhhhccCCcccchh
Q 009108 184 GAFLCATA---------QS-----------------------VQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGA 230 (543)
Q Consensus 184 ~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~ 230 (543)
..+++++. ++ .|...+...+.=+-...... .-.....|.+..+|-.|
T Consensus 105 fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakR 184 (509)
T COG3202 105 FFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKR 184 (509)
T ss_pred HHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 77777764 11 02222222222222222222 23345678888888899
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCC
Q 009108 231 LGSVNQLFICVGILAALVAGLPLAG 255 (543)
Q Consensus 231 ~~~~~~~~~~~G~~~~~~~~~~l~~ 255 (543)
..++++.+.+++..++..+..++..
T Consensus 185 Fy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 185 FYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998888887765
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00099 Score=63.27 Aligned_cols=110 Identities=13% Similarity=-0.055 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH---HHHHHHH
Q 009108 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA---AGAFLCA 189 (543)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~ 189 (543)
.+..-..+..+..+.++..+++-.+.. . ......+.+...+...+...+--+..-|.-..++..++. +..+.+.
T Consensus 27 GiG~LlpWN~fiTa~~y~~~~~~~~~~-~--~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~ 103 (406)
T KOG1479|consen 27 GIGTLLPWNMFITASDYYYYRFPGYHN-S--KNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLD 103 (406)
T ss_pred hcccccchHhhhccHHHHHhhcCCCch-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566667788888888755444 2 344455554444444444444444432222222222211 1112222
Q ss_pred Hh---------hhHHHHHHHHHHHhhhccccccchhhhhhccCCcc
Q 009108 190 TA---------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (543)
Q Consensus 190 ~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 226 (543)
++ ..++..++.-.+.+++.|......+...++. |++
T Consensus 104 ~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ 148 (406)
T KOG1479|consen 104 LALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSE 148 (406)
T ss_pred HHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHH
Confidence 22 3466666777888888887777766665554 544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00042 Score=68.28 Aligned_cols=111 Identities=15% Similarity=0.069 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCh-hHHHHHHHHHHHHHHHHHHHHhhcc--cc--cccchhHHHHHHHHHHHhhcCc
Q 009108 380 ASALVGAANVFGTAVASSLMDRQGRK-NLLTFSFTGMAASMLLLSLSFTWKV--LA--PYSGTLAVLGTVLYVLSFSLGA 454 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~ 454 (543)
....+.++..+|+.+..+.. .-++| +.+.+..+.=.+...++.++..... .+ -.+.+..++..++++..-+. .
T Consensus 312 ~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy-~ 389 (437)
T TIGR00939 312 CFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY-L 389 (437)
T ss_pred HHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH-H
Confidence 56677899999998665432 11222 1333333333333333333322110 00 01223333333333333322 2
Q ss_pred ccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHh
Q 009108 455 GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLY 492 (543)
Q Consensus 455 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 492 (543)
......+..+..++++|..+-.++...-.+|-.+|..+
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567788888888888888888888887777654
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0025 Score=63.43 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=75.0
Q ss_pred HHHHHHHHH-HHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh---------h---------------------
Q 009108 144 GWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---------Q--------------------- 192 (543)
Q Consensus 144 g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------~--------------------- 192 (543)
..+-....+ ...+...+..++++++++.+++-+....+.....+.++. +
T Consensus 61 ~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~ 140 (491)
T PF03219_consen 61 PFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAM 140 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHH
Confidence 555444444 445667789999999999999887777776666666553 1
Q ss_pred -hHHHHHHHHHHHhhhcccccc-chhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC
Q 009108 193 -SVQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (543)
Q Consensus 193 -~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 255 (543)
+.|.+.+..+..-+-.....+ .-..+..|.++.+|-.+..++++.+.++|.++++.+..++..
T Consensus 141 ~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 141 FRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222222222 245677899999999999999999999999988887777655
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=70.98 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=86.7
Q ss_pred chhhhhhHHHHHHHHHHHHh---hh------HHHHHHHHHHHhhhccccccchhhhhhccCCcc---cchhhhHHHHHHH
Q 009108 172 RTFQLDAVPLAAGAFLCATA---QS------VQTMIIGRVLAGIGIGISSAIVPLYISEISPTE---IRGALGSVNQLFI 239 (543)
Q Consensus 172 ~~~~~~~~~~~i~~~~~~~~---~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 239 (543)
|.++++.++..+|.++..++ .+ .+.++++-++.++|.|+.-+....+.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45678888888888874443 22 267889999999999999999999999999876 3467888999999
Q ss_pred HHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcc
Q 009108 240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (543)
Q Consensus 240 ~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 280 (543)
++|..++..+.+++.++ .+|.+.|.+.++..++..+.++.
T Consensus 82 n~G~~~~~~~~~~i~~~-~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN-YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHC-S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccc-cchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999998866 89999999998888776655444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=71.83 Aligned_cols=147 Identities=13% Similarity=0.014 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCC-hhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCccc
Q 009108 378 VAASALVGAANVFGTAVASSLMDRQGR-KNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGP 456 (543)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (543)
+.......++..++.++.|+...|.++ |+.++.+.++++++.++....... + +....+....=+..|.+.+...
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~---~--~~~~y~mL~~R~l~Gvg~~n~a 148 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV---P--NGVKYLMLVARILTGVGVGNFA 148 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc---c--cchHHHHHHHHHHcCcCcccHH
Confidence 445566788999999999999999886 888999999999999888433221 1 1122233333333344444555
Q ss_pred ccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh--h-----------ccccchhhhhHHHHHHHHhhhee
Q 009108 457 VPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK--F-----------GISTVYLGFATVCLLAVLYIAVN 523 (543)
Q Consensus 457 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~--~-----------g~~~~~~~~~~~~~~~~~~~~~~ 523 (543)
..-.|+++..-.+.|.++++..+....+|.++||.+...+... . -|..+-++.+++.++..++...+
T Consensus 149 ~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 149 VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 6667888877777899999988888888888887654333211 1 14456777788888887777777
Q ss_pred cccCCC
Q 009108 524 VVETKG 529 (543)
Q Consensus 524 ~~~~~~ 529 (543)
.+|.++
T Consensus 229 f~E~~~ 234 (488)
T KOG2325|consen 229 FKEVYR 234 (488)
T ss_pred eeeccc
Confidence 766543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0032 Score=51.98 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccc
Q 009108 380 ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPA 459 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (543)
...+......+..++.+.+.+++|.|+.+.++.+...+-....... +.+..+....+.+.+.+..+....
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~---------~~~~l~~~s~l~G~~~a~lW~aqg- 111 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP---------NSYTLYPASALLGFGAALLWTAQG- 111 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhHHhhHhhh-
Confidence 4455556677788889999999999999999887777655554432 234455556666666665444433
Q ss_pred cccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009108 460 LLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV 497 (543)
Q Consensus 460 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 497 (543)
.++.+...++.+++..++...+.+.+.++|..+.-.+.
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888889999999999999988888877655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=65.70 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=94.1
Q ss_pred HHHHHHcCCCchhHHH-HHHHHHHHHHHHHHHHhhhcc-----CChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhH
Q 009108 366 TSVFRSVGIESDVAAS-ALVGAANVFGTAVASSLMDRQ-----GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLA 439 (543)
Q Consensus 366 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (543)
+.+.++++.++..... ......--...++.|.++|-+ .||..++++.++..++.+.++..... ..+....
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~----~~s~~~~ 89 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS----ESSAAIA 89 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc----cchhhhH
Confidence 3445668888776522 111122234567899999985 34555566666655555544442110 1112222
Q ss_pred HHHHHHHHHHhhcCccccccccccccc---ChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHH
Q 009108 440 VLGTVLYVLSFSLGAGPVPALLLPEIF---ASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLA 516 (543)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 516 (543)
.+..++...+... .-.+.-+++.|.. |.+ +|...+....+..+|++++..+.|.+.+..+++..|.+.+.+..+.
T Consensus 90 ~~~l~la~~g~a~-~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 90 VVLLFLASFGYAF-ADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 2333333333322 1223333455554 444 7888899999999999999999999999999999998888877777
Q ss_pred HHhhheeccc
Q 009108 517 VLYIAVNVVE 526 (543)
Q Consensus 517 ~~~~~~~~~~ 526 (543)
.+..++..+|
T Consensus 168 ~~~~~~~~~e 177 (433)
T PF03092_consen 168 LIVALFLLEE 177 (433)
T ss_pred HHHHHHhhhh
Confidence 6655555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0014 Score=62.64 Aligned_cols=160 Identities=16% Similarity=0.026 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 009108 338 RYWKVVSVGAALFLFQQ---LAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 414 (543)
++.|.+++...+..+.+ +..|..+..+...++. ..+...+...++.+..++..+.+.|+.||+|-|...+++..+
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg--s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~l 118 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG--SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVL 118 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHH
Confidence 34444444444433322 3334455555544433 222334477778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009108 415 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 494 (543)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 494 (543)
..++..+=.........+...-.....+-.+......... .+..-+..-.+|+++|++|..+..+...+|.+++..+-.
T Consensus 119 n~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 119 NGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 9888877655433211111011122333333333322211 121213344578999999999999988899888877666
Q ss_pred HHHHhh
Q 009108 495 SVVNKF 500 (543)
Q Consensus 495 ~~~~~~ 500 (543)
.+..+.
T Consensus 198 ilV~~~ 203 (480)
T KOG2563|consen 198 ILVPSS 203 (480)
T ss_pred eecCCC
Confidence 555443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00087 Score=64.25 Aligned_cols=106 Identities=21% Similarity=0.135 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH-----HHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhh
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA-----AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~-----i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 218 (543)
.+...+|.+|..++.--...+ |+ |++.+.+.+-.. +.....-+.++.|.+++.-+..|+..|..++.....
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777888887766664432221 33 444433333222 222233456899999999999999999999999999
Q ss_pred hhccCCcccchhhhHHHHHHHHHHHHHHHHhhccc
Q 009108 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (543)
Q Consensus 219 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 253 (543)
+.|-.++++|..++|....+.++|..++.+++.++
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888665
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00099 Score=58.89 Aligned_cols=243 Identities=9% Similarity=0.031 Sum_probs=109.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhhcccCC----CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHH
Q 009108 226 EIRGALGSVNQLFICVGILAALVAGLPLAG----NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSI 301 (543)
Q Consensus 226 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 301 (543)
++|+....+...+.++|.++..+.-..-.+ ....|++.+.+.+++.++-+++..++-.+-+.. .++++++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~-~~~~k~~----- 75 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIY-SPKEKQE----- 75 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-Ccccccc-----
Confidence 557777778888888887765443211101 124599999998888776655554442110000 0000000
Q ss_pred HHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC------
Q 009108 302 QTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIE------ 375 (543)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 375 (543)
+.+.+.+++.+.++.+|++.-|...+.......... ......+...+....+.+
T Consensus 76 ------------------k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V--~p~t~~~~~~~~~~s~~ni~~~~~ 135 (267)
T PF07672_consen 76 ------------------KENSTLSKKPSYKSILKEKETWKWILIYGIWLVVVV--FPFTPSWFNILIWISPANIKSVVS 135 (267)
T ss_pred ------------------cccccccccchHHHHHccchHHHHHHHHHHHheeEE--EeccchhHhHhhhcCccccccccc
Confidence 001122344677888888887776655554433211 111122222222221110
Q ss_pred chh-----H-HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHh-hcccccccchhHHHHHHHHHH
Q 009108 376 SDV-----A-ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFT-WKVLAPYSGTLAVLGTVLYVL 448 (543)
Q Consensus 376 ~~~-----~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 448 (543)
... . ...+...+.++|.+..|...+..-+||..+...+.+.+.+.++..... .................++.+
T Consensus 136 ~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G 215 (267)
T PF07672_consen 136 GGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAG 215 (267)
T ss_pred ccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 111 1 222233444455566666666533344333333222222222221111 111111111222333333444
Q ss_pred HhhcCcccccccccccc--cChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009108 449 SFSLGAGPVPALLLPEI--FASRIRAKAVALSLGMHWISNFVIGLYFL 494 (543)
Q Consensus 449 ~~~~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 494 (543)
.+..+..++...+..|. ..|++.|.-.|+.-.++++.-.+.-.+..
T Consensus 216 ~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S 263 (267)
T PF07672_consen 216 FFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILS 263 (267)
T ss_pred HHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544333333 23555677777777666666555544443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0019 Score=46.11 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=50.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH
Q 009108 351 LFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG 414 (543)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 414 (543)
.+..++....+.-|.+.++++.|++.... ...+..+..+++.++.|.++||.++++.......+
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 34444556777888888888899988755 66777889999999999999999998877665443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0098 Score=60.27 Aligned_cols=143 Identities=16% Similarity=0.071 Sum_probs=82.1
Q ss_pred HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHH--HH-HHHHHH----HHhhhH-HHHHHH
Q 009108 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP--LA-AGAFLC----ATAQSV-QTMIIG 200 (543)
Q Consensus 129 ~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~--~~-i~~~~~----~~~~~~-~~l~~~ 200 (543)
.+.--+|-+.... +.+.++|++|.++|+.+++++.++.-++.. .+-+.+ .+ ++..+. ++...+ ..++..
T Consensus 40 ~l~~~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~ 116 (521)
T PRK03612 40 LASYLLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVL 116 (521)
T ss_pred HHHHHhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567776666 999999999999999999988744333322 111111 11 111111 111111 122334
Q ss_pred HHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHH
Q 009108 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (543)
Q Consensus 201 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 275 (543)
-++.|+..|+..|....+..+... ++-+...|-......+|.++|.++.+++.-...|-....++.+.+.+++.
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 456778888887777766654332 22456677777888888888888877655333554444445555554444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0075 Score=58.89 Aligned_cols=119 Identities=14% Similarity=0.023 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHHHHhhcCcccccccccccccChh---hhhHHHHHHHHH
Q 009108 406 NLLTFSFTGMAASMLLLSLSFTWKVL-APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR---IRAKAVALSLGM 481 (543)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~ 481 (543)
|+++++.++..+|.+++.+....... .........+++.++..|.+ +.=+....+..|.++++ .+.+....++..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 56778888888998887666443322 11122344555555555544 34455556788888654 567788889999
Q ss_pred HHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecc
Q 009108 482 HWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVV 525 (543)
Q Consensus 482 ~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
.++|..++..+.+++.++.||...|.+.++..+++.+..+...+
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999998888888776655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.11 Score=51.54 Aligned_cols=109 Identities=7% Similarity=-0.133 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccc--cc--------------c------chhHHHHHHHHH
Q 009108 390 FGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLA--PY--------------S------GTLAVLGTVLYV 447 (543)
Q Consensus 390 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~------~~~~~~~~~~~~ 447 (543)
+..++-+++++|++|++............++++.+........ +. . ..+......+..
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~ 138 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA 138 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence 3367789999999999988777666666665555543211100 00 0 011111222222
Q ss_pred HHhhcCccc-ccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 448 LSFSLGAGP-VPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 448 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
-.++....+ +.+.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223322333 677789999999999999999999999999999998888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00049 Score=64.96 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcc---cc--cccchhHHHHHHHHHHHhhcCc
Q 009108 380 ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKV---LA--PYSGTLAVLGTVLYVLSFSLGA 454 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~ 454 (543)
.+..+.++..+|+.+.++..-+..+++.+.+..+.-.+...++..+...+. .+ -.+.++.++..+++ ++..|+
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~--g~TNGy 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLF--GFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHH--HHccch
Confidence 456678999999998887532212333333333333333333333211100 00 01122223333333 333333
Q ss_pred -ccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHh
Q 009108 455 -GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLY 492 (543)
Q Consensus 455 -~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 492 (543)
......+..+..++++|..+-.++...-.+|-.+|..+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555577788888888887777777777777666654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.00088 Score=68.02 Aligned_cols=149 Identities=13% Similarity=-0.012 Sum_probs=0.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHH
Q 009108 349 LFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSF 426 (543)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 426 (543)
+..+.+......+..-++.+-+.++++.... +....-++.++..++..++.+|..|-+.+-.+.++++++.+++++..
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence 3333334444455555666667777776644 66667788888889999999998888888899999999998887653
Q ss_pred hhcccc--------------------------------------cccchhHHHHHHHHHHHhh---cCcccccccccccc
Q 009108 427 TWKVLA--------------------------------------PYSGTLAVLGTVLYVLSFS---LGAGPVPALLLPEI 465 (543)
Q Consensus 427 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 465 (543)
+....- ...........++.....+ ....++..+|+.|.
T Consensus 90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN 169 (539)
T ss_dssp --------------------------------------------------------------SSS---------------
T ss_pred hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence 321100 0000111111111111122 22456777899999
Q ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009108 466 FASRIRAKAVALSLGMHWISNFVIGLYFLSVV 497 (543)
Q Consensus 466 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 497 (543)
++++..+...|+..+...+|-++|=.+.+...
T Consensus 170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 170 VSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp --------------------------------
T ss_pred cccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 99999999999999998888877766665544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.15 Score=50.05 Aligned_cols=138 Identities=19% Similarity=0.167 Sum_probs=96.0
Q ss_pred HHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH---h
Q 009108 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---A 191 (543)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~ 191 (543)
+-+++.-.+..........-|+++..+ |..-+.-.+....+.+.+.++.+|+|..|.=++++..-.++..++.. .
T Consensus 269 lLY~TVLsf~~lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~ 346 (432)
T PF06963_consen 269 LLYFTVLSFGGLMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWA 346 (432)
T ss_pred HHHHHHhcCcHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 333333334445555555559999888 99999999999999999999999999888777776654443333322 1
Q ss_pred ---h----hHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccC
Q 009108 192 ---Q----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (543)
Q Consensus 192 ---~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 254 (543)
+ +...++.+-++.=+|.=+.-....-++.|..|+++||...|......++--++...++-.+.
T Consensus 347 ~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 347 PGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2 23333333344444444456667788999999999999999999998888777777665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.15 Score=50.23 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhHhhhh---hhcccchhhhhhHHHHHHHHHHHHh------------------hhHHHHHHHHHHHhhhc
Q 009108 150 LLAGATVGSFTGGSLAD---KFGRTRTFQLDAVPLAAGAFLCATA------------------QSVQTMIIGRVLAGIGI 208 (543)
Q Consensus 150 ~~l~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~ 208 (543)
-.+|..+++.+.+.+++ ++||++.+.++.++..++.++.-.. +++...++.-++.|++.
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 34444455555666664 5789999999888888877766543 24566777789999999
Q ss_pred cccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhc
Q 009108 209 GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (543)
Q Consensus 209 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 251 (543)
+......+.++.+.. +++|..+.++...-..++..++.....
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999 566888988888888887776554443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.25 Score=46.26 Aligned_cols=142 Identities=22% Similarity=0.166 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCCc----hhHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q 009108 362 VYYSTSVFRSVGIES----DVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT 437 (543)
Q Consensus 362 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (543)
....+.+....+... .........+...++.++.|.+.||.|||+.+..+.....++.+...+... ....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 95 (338)
T COG0477 22 SPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLA 95 (338)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHH
Confidence 334444444444433 234555566777777799999999999997777666553343333322210 0112
Q ss_pred hHHHHHHHHHHHhhcCcccccccccccccCh-hhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHh--hccccchhhhh
Q 009108 438 LAVLGTVLYVLSFSLGAGPVPALLLPEIFAS-RIRAKAVALSLG-MHWISNFVIGLYFLSVVNK--FGISTVYLGFA 510 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~~~~~--~g~~~~~~~~~ 510 (543)
.........+.+.+ ...+....++.|..|. +.++...+.... ...++..+++.+.+.+... .+|+..+....
T Consensus 96 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (338)
T COG0477 96 LLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAA 171 (338)
T ss_pred HHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 22222222222222 3445666688888887 568888888888 5777888888776666554 34555444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.07 Score=55.16 Aligned_cols=179 Identities=12% Similarity=0.015 Sum_probs=110.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHH
Q 009108 347 AALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSL 424 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 424 (543)
..+..+.+......+..-+..+-+.++++.... +....-++..+...+..+...|..|-+++-++.++++++.+++++
T Consensus 102 l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~al 181 (735)
T KOG3626|consen 102 LSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFAL 181 (735)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhC
Confidence 333333333333444455555555666665543 444456777788888889999999989999999999999998887
Q ss_pred HHhhcc--------------cc--------------------------cccc--hhHHHHHHHHHHH-hhcCcccccccc
Q 009108 425 SFTWKV--------------LA--------------------------PYSG--TLAVLGTVLYVLS-FSLGAGPVPALL 461 (543)
Q Consensus 425 ~~~~~~--------------~~--------------------------~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~ 461 (543)
.-.... .. .... .+.++.+.-+..| ......++..+|
T Consensus 182 PHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisY 261 (735)
T KOG3626|consen 182 PHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISY 261 (735)
T ss_pred hHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcc
Confidence 521100 00 0111 1212222222222 222346677779
Q ss_pred cccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh------------------c-cccchhhhhHHHHHHHHhhhe
Q 009108 462 LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF------------------G-ISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 462 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~ 522 (543)
+.|...++..+...|+.+++..+|-++|=.+.+.....+ | |...|++.+.+.++..+..++
T Consensus 262 iDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 262 IDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF 341 (735)
T ss_pred ccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998999999999998888888766666655321 1 333466666677776665555
Q ss_pred ecc
Q 009108 523 NVV 525 (543)
Q Consensus 523 ~~~ 525 (543)
+-+
T Consensus 342 fPk 344 (735)
T KOG3626|consen 342 FPK 344 (735)
T ss_pred Ccc
Confidence 433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.6 Score=40.49 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC
Q 009108 151 LAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (543)
Q Consensus 151 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 223 (543)
.+......++.+.+..++|-|+.++++....... +..=+=+.+..++-.-...|++.+..+..--+++++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 3444455666668999999999998877665542 22223377888999999999999999887777776543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.099 Score=51.79 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhc
Q 009108 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (543)
Q Consensus 192 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 251 (543)
++-+..++..++.|+..|-....+..+..+..+++||..+..+...+..+|..+|..++-
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999999999999999999999999888888888877653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.44 Score=46.18 Aligned_cols=148 Identities=12% Similarity=0.010 Sum_probs=90.3
Q ss_pred HHHHHHHHHH-cCCCchhHH---HHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q 009108 362 VYYSTSVFRS-VGIESDVAA---SALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT 437 (543)
Q Consensus 362 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (543)
++..+++.+. .+++..... +-...-..++.-+....+.|..+.|.+++++.+...+...++.+. .+..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--------~sv~ 95 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--------TSVL 95 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--------CcHH
Confidence 3444555443 677666552 222233455566778889999999999998887777777776654 1223
Q ss_pred hHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc--cccchhhhhHHHHH
Q 009108 438 LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG--ISTVYLGFATVCLL 515 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g--~~~~~~~~~~~~~~ 515 (543)
...+.-++++...+. -...++|+=...|+++.-++.+......-+|.+++..++-.+....+ +.....+..+...+
T Consensus 96 ~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~ 173 (412)
T PF01770_consen 96 AMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSL 173 (412)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 334444444444432 23344455566688888899999999888888888777666665333 33343443333344
Q ss_pred HHHh
Q 009108 516 AVLY 519 (543)
Q Consensus 516 ~~~~ 519 (543)
+.++
T Consensus 174 a~~~ 177 (412)
T PF01770_consen 174 ALLI 177 (412)
T ss_pred HHHH
Confidence 4443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.42 Score=48.62 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHH-hhccccchhhhhHHHHHHHH
Q 009108 471 RAKAVALSLGMHWISNFVIGLYFLSVVN-KFGISTVYLGFATVCLLAVL 518 (543)
Q Consensus 471 ~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~ 518 (543)
.+...|-.+....+|+++|+.+.+.+.- ..|......+.+.+.+++++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999888754 67766555555555544443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.97 Score=46.45 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHHHHHHHHHHHHHHHhhccccc-----
Q 009108 362 VYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP----- 433 (543)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 433 (543)
.....++...++.....+ .............+++++++|- .||.+++.++.++..++++++..........+
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 333444444444444433 3333344455667889999996 68888888888888888777665543321110
Q ss_pred --c-------c-chhHHHHHHHHHHH-hhcCcccccccccccccC----hhhhh--HHHHHHHHHHHHHHHHHHHhhHHH
Q 009108 434 --Y-------S-GTLAVLGTVLYVLS-FSLGAGPVPALLLPEIFA----SRIRA--KAVALSLGMHWISNFVIGLYFLSV 496 (543)
Q Consensus 434 --~-------~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~~~~~~~g~~ 496 (543)
. . ....++...+.... ...+.-+....+-+|.++ .+.+. .-+...+...++|..++-.+..++
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 01112222222222 122334555556777776 22233 566677777888888888888888
Q ss_pred HHhhccccchhhhhHHHHHHHHhhhe
Q 009108 497 VNKFGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 497 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
.+..||...|.+..++.+++.++.+.
T Consensus 218 q~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hhcccceeeccHHHHHHHHHHHHHHc
Confidence 88899999999888888777665543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.79 Score=33.22 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 009108 360 AVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLS 425 (543)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (543)
.....+|.+.++.+++.... ......++.++|.+...++.++.++++.+..+.+...+..+.+.+.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888877755 6677889999999999999999888888888888888888887764
|
Note that many members are hypothetical proteins. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.16 Score=49.05 Aligned_cols=130 Identities=12% Similarity=-0.086 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 223 (543)
.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+..++.+....-+-..|+-.+.....-...++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 45666777777799999999999999888888888888898888898888888888888888655555444444443321
Q ss_pred C---------------------c--ccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHH
Q 009108 224 P---------------------T--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (543)
Q Consensus 224 ~---------------------~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~ 273 (543)
. . ..+|...|+.+....+-.++..+..|.+.+...+=+.+-...++++++
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~ 487 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL 487 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence 1 1 123566677777777776666665566555434445444454444443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.32 Score=43.45 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=68.9
Q ss_pred HHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHH
Q 009108 368 VFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVL 445 (543)
Q Consensus 368 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (543)
+++.+++..... ++.......++...+.|-++||.|||+.-+.-.+...++++.= ..+. .-..+++-.+
T Consensus 63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK-------hSpq--YkVLmVGR~L 133 (454)
T KOG4332|consen 63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK-------HSPQ--YKVLMVGRVL 133 (454)
T ss_pred eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh-------cCCc--eEEEeehhhh
Confidence 334455544433 2222223445556677889999999986543333333322211 1111 1122222222
Q ss_pred HHHHhhcCccccccccccccc-----ChhhhhHHHHHHH-HHHHHHHHHHHHhhHHHHHhhccc--cchhhhhHHHHHHH
Q 009108 446 YVLSFSLGAGPVPALLLPEIF-----ASRIRAKAVALSL-GMHWISNFVIGLYFLSVVNKFGIS--TVYLGFATVCLLAV 517 (543)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~-----p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~~~~~~g~~--~~~~~~~~~~~~~~ 517 (543)
-+..-+..+...-..++.|.. |++-.....+=.. ....+-++++......+.|..+.. .+|-..+.+..++.
T Consensus 134 GGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm 213 (454)
T KOG4332|consen 134 GGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM 213 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 222222222222222555543 3333333333222 223345566666666777776644 45555444455554
Q ss_pred HhhheecccCCCC
Q 009108 518 LYIAVNVVETKGR 530 (543)
Q Consensus 518 ~~~~~~~~~~~~~ 530 (543)
.+.+.-..|..++
T Consensus 214 Avil~~W~ENygd 226 (454)
T KOG4332|consen 214 AVILSSWSENYGD 226 (454)
T ss_pred HHHHhhhhhccCC
Confidence 4444434444433
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.079 Score=50.07 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHhhHhhhhh-hcccchhhh--hhHHHHHHHHHHH----------HhhhHHHHHHHHHHHhhhccccc
Q 009108 146 IVSSLLAGATVGSFTGGSLADK-FGRTRTFQL--DAVPLAAGAFLCA----------TAQSVQTMIIGRVLAGIGIGISS 212 (543)
Q Consensus 146 ~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~--~~~~~~i~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~~ 212 (543)
+..+|.++=.+|..+.++.-=+ -.+|++.+. .-+++.-..++|- +.+|-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4556777777777766653211 134444432 1222222222331 23456777888999999999999
Q ss_pred cchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcc
Q 009108 213 AIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (543)
Q Consensus 213 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 252 (543)
..++.+..+..++++|..+..+......+|..+|..++..
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp HHHH------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888888877766543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=89.73 E-value=25 Score=35.61 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhc--cccccc--------------c------hhHHHHHH
Q 009108 387 ANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWK--VLAPYS--------------G------TLAVLGTV 444 (543)
Q Consensus 387 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------~------~~~~~~~~ 444 (543)
+.++...+-.++++++++.++.............++++..... ...++. . .|......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3445566788999999999887766666655555555442211 000000 0 00000111
Q ss_pred HHHHHhhcCc-ccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 445 LYVLSFSLGA-GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 445 ~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
+..-.++... .-..+.+++|.++.++..+-.++.....++|.++++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122112 22467789999999999999999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.17 E-value=19 Score=35.88 Aligned_cols=112 Identities=12% Similarity=-0.073 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcc--ccc-----------cc-c---------hhHHHHH
Q 009108 387 ANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKV--LAP-----------YS-G---------TLAVLGT 443 (543)
Q Consensus 387 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~-~---------~~~~~~~ 443 (543)
++++..++-.++.+++.+.++...........++++++...... .++ .. . .|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 45666778888999999988877766666666666655433110 000 00 0 0111111
Q ss_pred HHHHHHhhcC-cccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009108 444 VLYVLSFSLG-AGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 498 (543)
Q Consensus 444 ~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 498 (543)
.+..=..+.. ..-+.+..++|....++..+-+++.+...+++..+++.+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1211112211 223455678899999999999999999999999999888887765
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=87.45 E-value=19 Score=31.59 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhh---hhhcccchhhhhhHHHHHHH
Q 009108 145 WIVSSLLAGATVGSFTGGSLA---DKFGRTRTFQLDAVPLAAGA 185 (543)
Q Consensus 145 ~~~s~~~l~~~i~~~~~g~l~---dr~Grr~~~~~~~~~~~i~~ 185 (543)
+......+++.+|..+.+.+. ++..+|+.....+++-.+..
T Consensus 50 ~~~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll 93 (209)
T PF06912_consen 50 LRYLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILL 93 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 334445555666666666662 33444444444444444333
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.28 E-value=6.2 Score=37.53 Aligned_cols=162 Identities=14% Similarity=0.008 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 189 (543)
+++.++.....-+..........+++-+. ....+.-.-+-.....+..++.|...|+..|+|++...+++--++..+++
T Consensus 33 y~gy~lt~wgdR~W~F~VsL~M~~L~gns-l~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vag 111 (503)
T KOG2601|consen 33 YLGYFLTTWGDRMWEFSVSLFMILLGGNS-LLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAG 111 (503)
T ss_pred hHHHHHhHhhHhHHHHHHHHHHHHHcCce-ehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHH
Confidence 44444444444444555555555554321 11112222222334456677888899999999988777665433332222
Q ss_pred ------Hh------hhHHHHHHHHHHHhhhccc--cccch--hhhhhccC----Ccccchh---hhHHHHHHHHHHHHHH
Q 009108 190 ------TA------QSVQTMIIGRVLAGIGIGI--SSAIV--PLYISEIS----PTEIRGA---LGSVNQLFICVGILAA 246 (543)
Q Consensus 190 ------~~------~~~~~l~~~r~l~G~~~g~--~~~~~--~~~i~~~~----~~~~r~~---~~~~~~~~~~~G~~~~ 246 (543)
+. .++..+..+-++.-.-.+. ....+ ..+-.||. ..+.+.. +.+.....-..-.++.
T Consensus 112 glvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~La 191 (503)
T KOG2601|consen 112 GLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLA 191 (503)
T ss_pred HHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchh
Confidence 22 2455554444333222111 11111 11223443 2233333 3344445555667888
Q ss_pred HHhhcccCCCCCchHHHHHHhHHHHHH
Q 009108 247 LVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (543)
Q Consensus 247 ~~~~~~l~~~~~~wr~~f~~~~~~~~~ 273 (543)
|++.|.+... .+-|..-.+.++.+++
T Consensus 192 pv~tg~Iitf-vsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 192 PVITGLIITF-VSLRASAGTFAAWALV 217 (503)
T ss_pred hhhhccccee-echhhhhhhhHHHHHH
Confidence 8888887754 5556544444444444
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.4 Score=40.52 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccc------hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhh
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTR------TFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPL 217 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~------~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 217 (543)
-|....|-+|..+. +=+-|+=+-+ ++..-.+++.+...+..+.+++|..++.-+..|+-.|..++...-
T Consensus 291 RwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~ 365 (409)
T KOG3880|consen 291 RWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH 365 (409)
T ss_pred hhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 68888887764332 2222222211 222333444555566778899999999999999998988888888
Q ss_pred hhhccCCcccchhhhHHHHHHHHHHHHHHHHhhccc
Q 009108 218 YISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (543)
Q Consensus 218 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 253 (543)
-+.+-.++++|-.+|+...++-.+|..++.+++-.+
T Consensus 366 ~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 366 NIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 888888889999999999999999999988887665
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.89 E-value=0.87 Score=41.75 Aligned_cols=133 Identities=17% Similarity=0.063 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 223 (543)
|.+.-+-.+-..+..+....+.||+---.=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+.+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y- 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY- 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC-
Confidence 4455555556666777778888886432223444566677778889999999988888888888776655555443332
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHhhcccCC-CCCchHHHHHHhHHHHHHHHHHhccc
Q 009108 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAG-NPLWWRTMFGLAAIPSILLALGMGLS 281 (543)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~~wr~~f~~~~~~~~~~~~~~~~~ 281 (543)
++ ...+-+..+.+..+++|..--..+.+ ....-|.+.++...+-++.+...+++
T Consensus 144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 22 22333444444444444433333433 23556777777665555555554444
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.61 E-value=7.6 Score=37.16 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh-----ccCChhHHHH
Q 009108 364 YSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMD-----RQGRKNLLTF 410 (543)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~ 410 (543)
-.|.+++..+.+-......-+..--.--.++...+.| |+||||..++
T Consensus 52 ~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 52 AIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceee
Confidence 6777777555443322111111111222445566666 9999886554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.20 E-value=48 Score=32.36 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=7.6
Q ss_pred ccccChhhhhHHHH
Q 009108 463 PEIFASRIRAKAVA 476 (543)
Q Consensus 463 ~~~~p~~~~~~~~g 476 (543)
...+|+++....++
T Consensus 142 a~~~P~~ytqavm~ 155 (406)
T KOG1479|consen 142 AGLFPSEYTQAVMS 155 (406)
T ss_pred hhcCCHHHHHHHHh
Confidence 34467776554443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.8 Score=36.87 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhh-cccchhh----hhhHHHHHHHHHHHH-h----hhHHHHHHHHHHHhhhcccccc
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQ----LDAVPLAAGAFLCAT-A----QSVQTMIIGRVLAGIGIGISSA 213 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~~ 213 (543)
....-++..|+.+|....|.++..- -||+.+. .+++++.+..++... . .++..+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5556677788888888889988754 4555433 233444444433211 1 2466677778888887644444
Q ss_pred chhhhhhccCCcccchhhhHHHHHHHHHHHHH
Q 009108 214 IVPLYISEISPTEIRGALGSVNQLFICVGILA 245 (543)
Q Consensus 214 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 245 (543)
+... +.+-++...+-+..-.++..+++|.+.
T Consensus 224 ViL~-lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILN-LPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhc-ChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 4333 333333333334444455566666543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.78 E-value=27 Score=33.03 Aligned_cols=94 Identities=21% Similarity=0.154 Sum_probs=60.9
Q ss_pred hHHHHHHHcC-CCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHH-------HHHHHHHHH--hhhHH
Q 009108 126 ALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL-------AAGAFLCAT--AQSVQ 195 (543)
Q Consensus 126 ~~~~i~~~~~-~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~-------~i~~~~~~~--~~~~~ 195 (543)
.+..++..++ -.--+. +.+.+.|...+.+|+...-++.|.--.-+.+..-+++. .+..+.+++ .++-+
T Consensus 29 al~tLatyLlG~~Ilq~--S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~ 106 (508)
T COG4262 29 ALGTLATYLLGGGILQT--SLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRL 106 (508)
T ss_pred HHHHHHHHhcCCceeeh--HHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHH
Confidence 5555666653 333444 99999999999999999888877543332222211111 111112221 25677
Q ss_pred HHHHHHHHHhhhccccccchhhhhhc
Q 009108 196 TMIIGRVLAGIGIGISSAIVPLYISE 221 (543)
Q Consensus 196 ~l~~~r~l~G~~~g~~~~~~~~~i~~ 221 (543)
.+++.-++.|.-.|...|..+.++..
T Consensus 107 Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 107 VLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 88888999999999999999888776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 543 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-40 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 54/343 (15%), Positives = 109/343 (31%), Gaps = 53/343 (15%)
Query: 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185
A+ +A+DL + E V ++ + L V G ++D+ GR +
Sbjct: 22 AIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79
Query: 186 FLCATAQSVQTMIIGRVLAGIGIG----ISSAIVP-LYISEISPTEIRGALGSVNQLFIC 240
+ T S+ +I + G+G G ++ + LY T++R A +N +
Sbjct: 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY----ERTQLRHANSLLNMGILV 135
Query: 241 VGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEK 299
+LA L+ GL WR + + + M PE+ ++
Sbjct: 136 SPLLAPLIGGLLDT--MWNWRACYLFLLVLCAGVTFSMARWMPET---RPVDAPRTRLLT 190
Query: 300 SIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGIN 359
S +TL+G + +L L AG + L + G++
Sbjct: 191 SYKTLFGNSGFNCYLLMLIGGL-------AGIA----------AFEACSGVLMGAVLGLS 233
Query: 360 AVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASM 419
++ + +F L A FG A R + +A +
Sbjct: 234 SMTV--SILF------------ILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLL 279
Query: 420 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLL 462
+ + F + ++ L+ + + +
Sbjct: 280 MWIPDWFGVMNVWTL-----LVPAALFFFGAGMLFPLATSGAM 317
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 59/405 (14%), Positives = 118/405 (29%), Gaps = 50/405 (12%)
Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188
+L I+++ G I +++ + + G L+DK G + +
Sbjct: 33 WLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90
Query: 189 ATAQSVQTMIIGRVLAGIGIGI-----SSAIVPL--YISEISPTEIRGALGSVNQLFICV 241
+ ++ I GI +A P E G ++F CV
Sbjct: 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRA-RMFGCV 149
Query: 242 G-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKS 300
G L A + G+ N + +F L + +++LA+ + + A S
Sbjct: 150 GWALGASIVGIMFTINNQF---VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS 206
Query: 301 IQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINA 360
+L +LF +S+
Sbjct: 207 AFSL------------------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQ 242
Query: 361 VVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAAS 418
+ TS F + + V + + N A +++R G KN L + T M+
Sbjct: 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302
Query: 419 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS 478
++ S + + + V+ L++ + F R A +
Sbjct: 303 IIGSSFATSALEV--------VILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVC 353
Query: 479 LGMHW-ISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 522
++ + + ++ G YL V L L
Sbjct: 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 71/433 (16%), Positives = 132/433 (30%), Gaps = 72/433 (16%)
Query: 139 NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ------ 192
+ G+ +S + F GS++D+ R F L AG L A
Sbjct: 60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSN-PRVF------LPAGLILAAAVMLFMGFV 112
Query: 193 -----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAA 246
S+ M + L G G+ + + RG + SV VG +
Sbjct: 113 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 172
Query: 247 LVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL----SPESPRWLFQQGKKSEAEKSIQ 302
L+ L W + A +IL+AL +P+S E
Sbjct: 173 LLFLL-GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL-------PPIE---- 220
Query: 303 TLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLA-GIN-- 359
+ + A Q + + ++ + + A L GI
Sbjct: 221 ----EYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL--LWYIAIANVFVYLLRYGILDW 274
Query: 360 AVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDR--QGRKNLLTFSFTGMAA 417
+ Y + ++ A L A + GT + + D+ +G + F +
Sbjct: 275 SPTYLKEV--KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332
Query: 418 SMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL 477
++ + V+G ++Y +G L P KA
Sbjct: 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL--HALELAP--------KKAAGT 382
Query: 478 SLG-MHWISNF--------VIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETK 528
+ G ++G V+ FG ++ +LAV+ + + V+ +
Sbjct: 383 AAGFTGLFGYLGGSVAASAIVGY----TVDFFGWDGGFMVMIGGSILAVI-LLIVVMIGE 437
Query: 529 GRSLEEIERALNP 541
R E++ + L P
Sbjct: 438 KRRHEQLLQELVP 450
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.5 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.35 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.29 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.28 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.23 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.15 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=365.99 Aligned_cols=435 Identities=33% Similarity=0.578 Sum_probs=343.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcc------hhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccch
Q 009108 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAEN------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~------~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 173 (543)
+..+.+..+.+++.+..++|.++++..+|.+.++++.+.+ ....|++.+++.+|..++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456666667888999999999999999999998854321 2234899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHH------------------HhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHH
Q 009108 174 FQLDAVPLAAGAFLCA------------------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235 (543)
Q Consensus 174 ~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 235 (543)
++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999999 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCC-------CCCchHHHHHHhHHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCch
Q 009108 236 QLFICVGILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE 308 (543)
Q Consensus 236 ~~~~~~G~~~~~~~~~~l~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (543)
..+..+|.++++.++..+.. ...+||+.+.+..++.++..+..+++||+|+|+..+++.+++.+.+++....+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 99999999988887765432 12569999999999988888888899999999999999999888877765544
Q ss_pred hhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchhH--HHHHHHH
Q 009108 309 RVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--ASALVGA 386 (543)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 386 (543)
..+++..+.+......+ +.......++. +...+......+.++.+...+.+|.+.+.+..+.+.... .....++
T Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGR-KTGGRLLMFGV---GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTHHHHSCC---THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhh-hhhhHHHHhcc---cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence 33333222221111110 11111122222 233444555556666778888899999988887766543 4566778
Q ss_pred HHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCccccccccccccc
Q 009108 387 ANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIF 466 (543)
Q Consensus 387 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (543)
..+++.++++++.||+|||+.++.+.....++++.+....... ......++..+++..++..+..++.+.+.+|.+
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f 399 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 8899999999999999999999998888888877766543321 123444555666666777778888888999999
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH------hhccccchhhhhHHHHHHHHhhheecccCCCCCHHHHHHhcC
Q 009108 467 ASRIRAKAVALSLGMHWISNFVIGLYFLSVVN------KFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 540 (543)
Q Consensus 467 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (543)
|++.|++++|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.+++.||+|+|+.||+|+.+|
T Consensus 400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999999999999999999888766543 345667788899999999988889999999999999999887
Q ss_pred CC
Q 009108 541 PV 542 (543)
Q Consensus 541 ~~ 542 (543)
++
T Consensus 480 ~~ 481 (491)
T 4gc0_A 480 PE 481 (491)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=325.70 Aligned_cols=398 Identities=14% Similarity=0.111 Sum_probs=296.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhH
Q 009108 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (543)
+..+..+..+++..+...++...+.+.+|.+.+++ .+..+. |++.+++.++..++++++|+++||+|||++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34466677778888888898889999999999999 999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCC
Q 009108 180 PLAAGAFLCAT----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (543)
Q Consensus 180 ~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 255 (543)
+.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCc-hHHHHHHhHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhh
Q 009108 256 NPLW-WRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD 333 (543)
Q Consensus 256 ~~~~-wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (543)
. .+ ||+.|++.+++.++..+ ..+++||+|+....+++++... .. +.+ ..+++++....++...++
T Consensus 181 ~-~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~--~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 181 W-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN--------DY--PDD--YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp H-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC--------C-----------------CCTHHHHHH
T ss_pred H-hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc--------cc--ccc--chhhhhcccccccchHHH
Confidence 4 67 99999999988876554 4455688776321111110000 00 000 000000001111112456
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhhhcc--CChhHH
Q 009108 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLMDRQ--GRKNLL 408 (543)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~ 408 (543)
+++++.++...+...+... .......+.+.++++ .+.+.... ......++.+++.++.+++.||+ ++|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 6777776665554444433 245566677777766 67776543 56667889999999999999999 999888
Q ss_pred HHHHHHHH-HHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHH-HH
Q 009108 409 TFSFTGMA-ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI-SN 486 (543)
Q Consensus 409 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~ 486 (543)
..+..+.. ++++++.+. ...+.+......++.+.+.. ...+....++.|.+|++.|++++|+.+.+.++ |.
T Consensus 324 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMN------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp HHHHHHHHHHHHHHTTSC------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------cccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 77665555 444333221 11122233333333333332 23444556889999999999999999999999 99
Q ss_pred HHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheec
Q 009108 487 FVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNV 524 (543)
Q Consensus 487 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 524 (543)
.++|.+.|.+.+..|+...|++.+++.+++.++.++..
T Consensus 397 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887776655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=305.49 Aligned_cols=369 Identities=16% Similarity=0.139 Sum_probs=285.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHH
Q 009108 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (543)
+..+..+++..+..+++.....+..|.+.+++|++..+. |++.+++.+++.++++++|+++||+|||++++++.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 444555667778888888899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccC-CCCC
Q 009108 183 AGAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-GNPL 258 (543)
Q Consensus 183 i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~~~ 258 (543)
++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+. +...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 888999999999999999999999999999999999999999999999999999999999999887 5423
Q ss_pred c------------------------hHHHHHHhHHHHHHHHHHhcc--cCCChhHHHhcCChHHHHHHHHHHhCchhhHH
Q 009108 259 W------------------------WRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSE 312 (543)
Q Consensus 259 ~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (543)
. ||+.|++.+++.++..+..++ .||+++. ++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~------------------ 241 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD------------------ 241 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC------------------
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc------------------
Confidence 3 999998888777665544433 3555431 0000
Q ss_pred HHHHHHHhccCCCCcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHc-CCCchhH--HHHHHHHHH
Q 009108 313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSV-GIESDVA--ASALVGAAN 388 (543)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--~~~~~~~~~ 388 (543)
+++++.+.+++++++++.++...+...+.... ......+.+.+ .++. +.+.... ......++.
T Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 308 (438)
T 3o7q_A 242 ---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCF 308 (438)
T ss_dssp ---------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred ---------ccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHH
Confidence 01111223456778888877766655544443 34445555665 5554 7776544 566677889
Q ss_pred HHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccCh
Q 009108 389 VFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS 468 (543)
Q Consensus 389 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 468 (543)
+++.++.+++.||++||+.+..+..+.+++++++.+. ......+...+.+.+.+ ...+....+..|.+|+
T Consensus 309 ~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 309 FIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHT-THHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Confidence 9999999999999999999988888777776665542 11223333344444433 3456666677888987
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cccchhhhhHHHHHHHHh
Q 009108 469 RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLY 519 (543)
Q Consensus 469 ~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~ 519 (543)
+ ++.+.++.. ...+|+.++|.+.|.+.|..| ++..|.+.+++.++..++
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6 888888877 678999999999999999999 888888766555554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=278.02 Aligned_cols=398 Identities=13% Similarity=0.019 Sum_probs=252.4
Q ss_pred hhhHHHHHHH-----cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhh-hcccchhhhhhHHHHHHHHHHHHhhhHHHH
Q 009108 124 NGALEYLAKD-----LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (543)
Q Consensus 124 ~~~~~~i~~~-----~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 197 (543)
....+++.++ +|.+..+. +++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL 111 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred HHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3455566666 99999988 999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccchhhhhhccCCccc--chhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHH
Q 009108 198 IIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (543)
Q Consensus 198 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 275 (543)
+++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+. .+||+.|++.++..++..
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 77788889999999999999999998765 789999999877766655
Q ss_pred HHhccc-CCChh----HHHhcCChHHHHHHHHH----------------HhCchhhHHHHH---------HHHHhccCCC
Q 009108 276 LGMGLS-PESPR----WLFQQGKKSEAEKSIQT----------------LYGKERVSEVML---------DLTNAGQGSA 325 (543)
Q Consensus 276 ~~~~~~-~e~~~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~---------~~~~~~~~~~ 325 (543)
+..++. ++..+ ....+.+.++..+..+. .....+.+.... .........+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (491)
T 4aps_A 191 LVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMIS 270 (491)
T ss_dssp HHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhh
Confidence 444332 21110 00001111222221111 000000000000 0000000000
Q ss_pred CcccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCC--chhHHHHHHHHHHHHHHHHHHHhhhcc
Q 009108 326 EPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIE--SDVAASALVGAANVFGTAVASSLMDRQ 402 (543)
Q Consensus 326 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~ 402 (543)
+++....+..+........+........... ...+.+.+.++ .+.+ ..........++.+++.++.+++.||+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 346 (491)
T 4aps_A 271 SVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQ----GSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW 346 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGG----GGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 0000011111112222233233333332222 22333333333 3333 334455666778888899999999999
Q ss_pred CChhHHH-----HHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHH
Q 009108 403 GRKNLLT-----FSFTGMAASMLLLSLSFTWKV-LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 476 (543)
Q Consensus 403 g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 476 (543)
+||+... .+..+.+++++++........ ....+.+......++.+.+.. ...+....++.|.+|++.|+++.|
T Consensus 347 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g 425 (491)
T 4aps_A 347 KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMS 425 (491)
T ss_dssp TTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred hccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHH
Confidence 9886544 555566666555544321111 111123333444444444443 345566678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheecccCCCC
Q 009108 477 LSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 530 (543)
Q Consensus 477 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (543)
+.+...++|..++|.+.+.+.+ .++...|.+.+++++++.++.+++.++.+++
T Consensus 426 ~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 426 MWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887754 4667788888888877777666655555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=275.41 Aligned_cols=354 Identities=17% Similarity=0.118 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHH
Q 009108 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 186 (543)
.++++..+...+....+.+.+|.+.+++|.+..+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 34566777888888899999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHH
Q 009108 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (543)
Q Consensus 187 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~ 266 (543)
+++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++++.+. .+||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865 789999999
Q ss_pred hHHHHHHHHH-HhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHH
Q 009108 267 AAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (543)
Q Consensus 267 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (543)
.+++.++..+ ..+++||++++ +++ +++.+.+++++++++.++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV---DAP------------------------------RTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT---TCC------------------------------CCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCC---Ccc------------------------------cccHHHHHHHHhcCcchHHHHH
Confidence 9888877666 44556776542 100 0123345667777777766555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHH-HHHHHHH
Q 009108 346 GAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTG-MAASMLL 421 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~ 421 (543)
...+.... ......+.+.+.++ .+.+.. ........++.+++.++.+++.||.+++ ...+... ...+...
T Consensus 207 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 207 MLIGGLAG----IAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHH----HHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSS
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 54444333 33444444444433 444443 3355666788888999999999998772 2222222 2222221
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009108 422 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 501 (543)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g 501 (543)
+...... ..+.+.......+.+.+.+. ..+....+..|..| +.|+++.|+.+...++|..++|.+.|.+.+..+
T Consensus 281 ~~~~~~~----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 281 WIPDWFG----VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp SHHHHHH----HHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHhhhc----cccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1111100 00122233344444444443 45566668889998 789999999999999999999999999988877
Q ss_pred cccchhh
Q 009108 502 ISTVYLG 508 (543)
Q Consensus 502 ~~~~~~~ 508 (543)
+...+.+
T Consensus 355 ~~~~~~~ 361 (375)
T 2gfp_A 355 GSLGLLM 361 (375)
T ss_dssp HHHHHHH
T ss_pred ccHHHHH
Confidence 7666654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-30 Score=256.05 Aligned_cols=374 Identities=14% Similarity=0.063 Sum_probs=236.1
Q ss_pred HHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHH---HHHHH
Q 009108 115 LFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA---FLCAT 190 (543)
Q Consensus 115 ~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~ 190 (543)
..........+.+|. +++++|.+..+. |++.+++.+++.++++++|+++||+|||++++++..+++++. ..+++
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334454556665 556799999999 999999999999999999999999999999998888775532 22233
Q ss_pred hhhH-HHHHHHHHHHhhhccccccchhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHh
Q 009108 191 AQSV-QTMIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (543)
Q Consensus 191 ~~~~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~ 267 (543)
++.. ..++..+++.|++.+..++.....+.++.++ ++++...+....+..+|..++|.+++++.+ .+||+.|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~ 173 (417)
T 2cfq_A 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLG 173 (417)
T ss_dssp HHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHH
Confidence 3322 1345567777776665555555555555543 345777788777788899999999888764 5799999988
Q ss_pred HHHHHHHHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhHHHHHHH
Q 009108 268 AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGA 347 (543)
Q Consensus 268 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 347 (543)
++..++..+..++.+|+++. ..+++++ . +.+.++....+++++++++.++...+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (417)
T 2cfq_A 174 SGCALILAVLLFFAKTDAPS--SATVANA----------V------------GANHSAFSLKLALELFRQPKLWFLSLYV 229 (417)
T ss_dssp TTTTTTHHHHSCSSCCCCSC--SSCSSSS----------S------------SSCCCCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccc--ccccccc----------c------------ccccccccHHHHHHHhcCCchhhHHHHH
Confidence 77765555555555443321 0000000 0 0000011112345677777666544432
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-cCCC---ch--hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 009108 348 ALFLFQQLAGINAVVYYSTSVFRS-VGIE---SD--VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLL 421 (543)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 421 (543)
...... +.....+.+.++.+ .+.. .. ........++.+++.++.+++.||+|||+.+..+..+.+++.+.
T Consensus 230 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 230 IGVSCT----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 222221 22222223333333 2211 11 22344555677888999999999999999888777666665444
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHhh
Q 009108 422 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS-LGMHWISNFVIGLYFLSVVNKF 500 (543)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~~~~~~ 500 (543)
+.+. .+.+..++...+.+.+.. ...+....++.|.+|++.||++.++. +...++|++++|.+.|.+.+..
T Consensus 306 ~~~~--------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 306 SSFA--------TSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HTTC--------CSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHh--------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 4221 112222222222222222 12223355889999999999999994 8888999999999999999988
Q ss_pred ccccchhhhhHHHHHHHHhhheecccCCC
Q 009108 501 GISTVYLGFATVCLLAVLYIAVNVVETKG 529 (543)
Q Consensus 501 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (543)
|+...|.+.+++++++.++.+...+++++
T Consensus 377 g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 377 GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 88888888888888877766655555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=254.98 Aligned_cols=152 Identities=19% Similarity=0.205 Sum_probs=137.1
Q ss_pred hHHHHHHHcC------CCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh-cccchhhhhhHHHHHHHHHHHHhh-hHHHH
Q 009108 126 ALEYLAKDLG------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQTM 197 (543)
Q Consensus 126 ~~~~i~~~~~------~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l 197 (543)
..+++.+++| .+..+. +++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.+
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF 112 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 4556788899 999888 9999999999999999999999999 999999999999999999999999 99999
Q ss_pred HHHHHHHhhhccccccchhhhhhccCCcccchhhhHH---HHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHH
Q 009108 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV---NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL 274 (543)
Q Consensus 198 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 274 (543)
+++|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++++.+. .+||+.|++.+++.++.
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876666 8899999999999999988765 78999999988877665
Q ss_pred HHHhcc
Q 009108 275 ALGMGL 280 (543)
Q Consensus 275 ~~~~~~ 280 (543)
.+..++
T Consensus 192 ~~~~~~ 197 (524)
T 2xut_A 192 TVFFWL 197 (524)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-14 Score=138.82 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=134.1
Q ss_pred HHHHHhhhhHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhh--cccchhhhhhHHHH-HHHHHHHHh--
Q 009108 118 YHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQLDAVPLA-AGAFLCATA-- 191 (543)
Q Consensus 118 ~~~~~~~~~~~~i~~~-~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~~~~~-- 191 (543)
..........|.+.++ +|.+..+. +++.+.+.++..++.++.|++.||+ |||+.+..+.++.. ++.++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA 343 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444566665555 89988888 9999999999999999999999999 99999888877776 666666665
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHH-HHHHHHHhhcccCCCCCchHHHHHHhHHH
Q 009108 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (543)
Q Consensus 192 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~wr~~f~~~~~~ 270 (543)
.+.+.+++..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+. .+|+..|++.+++
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGG 422 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 37788888889999998888888889999999999999999999999999 999999999998876 7899999998888
Q ss_pred HHHHHHHhcc
Q 009108 271 SILLALGMGL 280 (543)
Q Consensus 271 ~~~~~~~~~~ 280 (543)
.++..+..++
T Consensus 423 ~~~~~~~~~~ 432 (451)
T 1pw4_A 423 SILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776655544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-12 Score=124.76 Aligned_cols=160 Identities=12% Similarity=0.047 Sum_probs=119.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009108 356 AGINAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 433 (543)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
..........+.+.++++.+.... ......++..++.++.|+++||+|||+.+..+.++.+++.+++......
T Consensus 40 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----- 114 (438)
T 3o7q_A 40 VANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI----- 114 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 334566677788888898887754 6667778889999999999999999999999999998888877432111
Q ss_pred ccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH-Hhhc-----------
Q 009108 434 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV-NKFG----------- 501 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~-~~~g----------- 501 (543)
.+.+..++..++.+.+.+. ..+....++.|.+|+++|+.++++.+....+|..++|.+.+.+. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 193 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMS 193 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSC
T ss_pred ccHHHHHHHHHHHHhhHHH-hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 1233444444555554443 34455668999999999999999999999999999999999988 4444
Q ss_pred --------------cccchhhhhHHHHHHHHhhh
Q 009108 502 --------------ISTVYLGFATVCLLAVLYIA 521 (543)
Q Consensus 502 --------------~~~~~~~~~~~~~~~~~~~~ 521 (543)
|++.|.+.+++.++..++.+
T Consensus 194 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 194 PEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67788776666655544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-13 Score=131.61 Aligned_cols=142 Identities=10% Similarity=0.044 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 223 (543)
+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 78888888888999999999999999999999998888888777788888888888888888887767777788999999
Q ss_pred CcccchhhhHH-HHHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcc-cCCChh
Q 009108 224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESPR 286 (543)
Q Consensus 224 ~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~ 286 (543)
|++.|+.+.++ ++....+|..++|.+++++.+. .+++..|.+.+++.++..+..++ .+|+++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999998 4778889999999999988765 68899998888887776655444 455443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-12 Score=122.51 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 358 INAVVYYSTSVFRSVGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
........+.+.++++.+.... ......++..++.++.|+++||+|||+.+..+..+..++.+++.+.. +
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~ 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------S 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--------c
Confidence 4445555677777788877644 56677888999999999999999999999999988888888777642 1
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHH
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLL 515 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 515 (543)
.+..++..++.+.+.+ ...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|.+.+++.++
T Consensus 88 ~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2333333344443333 245566668899999999999999999999999999999999999888999999988888877
Q ss_pred HHHhhheecccCCC
Q 009108 516 AVLYIAVNVVETKG 529 (543)
Q Consensus 516 ~~~~~~~~~~~~~~ 529 (543)
..++..+..||+++
T Consensus 167 ~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 167 VTFSMARWMPETRP 180 (375)
T ss_dssp HHCCCCCSSCCCST
T ss_pred HHHHHHHHCcccCC
Confidence 77655555665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-11 Score=119.97 Aligned_cols=142 Identities=12% Similarity=0.149 Sum_probs=110.5
Q ss_pred cCCCchhH--HHHHHHHHHHHHHHHHHHhhhc-cCChhHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHH
Q 009108 372 VGIESDVA--ASALVGAANVFGTAVASSLMDR-QGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVL 448 (543)
Q Consensus 372 ~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (543)
++.+.... ......++..++.++.|+++|| +|||+.+..+.++..++.+++.+. .+.+..++..++.+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~g~ 120 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--------FGASALFGSIILIII 120 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--------CSTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHH
Confidence 77776644 6677788999999999999999 899999999998888887776542 123344444445444
Q ss_pred HhhcCcccccccccccccChhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHHHHHHHHhhhe
Q 009108 449 SFSLGAGPVPALLLPEIFASRI--RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 522 (543)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 522 (543)
+.+. ..+....++.|.+|++. |+.++++.+...++|..++|.+.+.+.+..||+..|.+.++..+++.++.++
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 121 GTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 44566668999999888 7888888999999999999999999999999999999887777666655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=118.12 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=111.1
Q ss_pred HHHHHHHcC------CCchhH--HHHHHHHHHHHHHHHHHHhhhcc-CChhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009108 365 STSVFRSVG------IESDVA--ASALVGAANVFGTAVASSLMDRQ-GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 435 (543)
Q Consensus 365 ~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
.+++.++.+ .+.... ......++.+++.++.|+++||+ |||+.+..+.++.+++.+++.+.. .+
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-------~~ 108 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------HS 108 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-------SC
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-------cc
Confidence 333444566 665543 66677888899999999999999 999999998888888877776531 02
Q ss_pred chhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHH---HHHHHHHHHHHHHHhhHHHHHhhccccchhhhhHH
Q 009108 436 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL---SLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATV 512 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~ 512 (543)
.+..++..++.+.+.+ ...+...+++.|.+|++.|+++.+. .+...++|..++|.+.+.+.+..||+..|.+.+++
T Consensus 109 ~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 109 VQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp HHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2333444444444443 3455666689999999999776666 88999999999999999999999999999888877
Q ss_pred HHHHHHhhhe
Q 009108 513 CLLAVLYIAV 522 (543)
Q Consensus 513 ~~~~~~~~~~ 522 (543)
.+++.++.++
T Consensus 188 ~~~~~~~~~~ 197 (524)
T 2xut_A 188 MFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 7766655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-11 Score=124.77 Aligned_cols=164 Identities=18% Similarity=0.101 Sum_probs=116.5
Q ss_pred HHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHh-----hhH
Q 009108 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSV 194 (543)
Q Consensus 120 ~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~ 194 (543)
...+....+.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+....+++.+..+.. ++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 3344446677888888777666 677777788888999999999999999999999998888877666543 122
Q ss_pred HHHHHHH-HHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcccCCC-----CCchHHHHHHhH
Q 009108 195 QTMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-----PLWWRTMFGLAA 268 (543)
Q Consensus 195 ~~l~~~r-~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-----~~~wr~~f~~~~ 268 (543)
..++..- +..+++. ...+....+.+|.+|.+.|++++++......+|..+++.+...+.+. ..++.+.|++.+
T Consensus 371 ~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~ 449 (491)
T 4gc0_A 371 VALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 449 (491)
T ss_dssp HHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2222222 2222222 23456778999999999999999999999889888887776554321 134556778888
Q ss_pred HHHHHHHHH-hcccCCChh
Q 009108 269 IPSILLALG-MGLSPESPR 286 (543)
Q Consensus 269 ~~~~~~~~~-~~~~~e~~~ 286 (543)
+++++..+. .+++||+..
T Consensus 450 ~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 450 CMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHheecCCCC
Confidence 777776554 456799864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 543 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-18 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-08 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 85.9 bits (211), Expect = 2e-18
Identities = 57/440 (12%), Positives = 127/440 (28%), Gaps = 26/440 (5%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
G + A+ YL + G + + G+ +S + F GS++
Sbjct: 27 FLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVS 83
Query: 166 DKFGRTRTFQLDAVPLAAGAFLC----ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221
D+ + AA S+ M + L G G+ +
Sbjct: 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143
Query: 222 ISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280
+ RG + SV VG + L+ L +A W ++ A ++ +
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203
Query: 281 SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW 340
++P+ G + E D + AE E +F
Sbjct: 204 MRDTPQS-----------------CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVL 246
Query: 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMD 400
+ + + + + + + S+ + + L
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 306
Query: 401 RQGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPAL 460
K M L++++ + P + ++ + G + L
Sbjct: 307 WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL 366
Query: 461 LLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLS-VVNKFGISTVYLGFATVCLLAVLY 519
E+ + A + ++ V + V+ FG ++ +LAV+
Sbjct: 367 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 426
Query: 520 IAVNVVETKGRSLEEIERAL 539
+ V ++ K R + ++ +
Sbjct: 427 LIVVMIGEKRRHEQLLQELV 446
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 47/434 (10%), Positives = 104/434 (23%), Gaps = 41/434 (9%)
Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
L + + +G +L I+++ G I +++ + + G L+DK
Sbjct: 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIG-----ISSAIVPLYISEIS 223
G + + + ++ I G +A P + I
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283
R A + + + + + IL L +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 284 SPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV 343
+P A +LF +
Sbjct: 191 APSSATVANAVGANHS-------------------------AFSLKLALELFRQPKLWFL 225
Query: 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGTAVASSLMDRQG 403
S+ V + F + + + + G G + +S+M
Sbjct: 226 SLYVIGVSCT-----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAP 280
Query: 404 RKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLP 463
+ + ++S+ A + + +L T+ +
Sbjct: 281 LIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF--EVPFLLVGCFKYIT 338
Query: 464 EIFASRIRAKAVALSLGM-HWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 522
F R A + ++ + + ++ G YL V L L
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398
Query: 523 NVVETKGRSLEEIE 536
+ SL +
Sbjct: 399 TLSGPGPLSLLRRQ 412
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 26/290 (8%), Positives = 72/290 (24%), Gaps = 2/290 (0%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
+ R+ ++ + + A
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178
Query: 61 QGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHL 120
LF + S A+A + A + + + + Y +
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238
Query: 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
A + + + T + G++ + F + ++ G L
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298
Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFI 239
++ + A S ++I + L + YI+ F
Sbjct: 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358
Query: 240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289
+ ++ V + + + ++ + + + ++ L + P L
Sbjct: 359 QLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.47 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.37 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-39 Score=320.32 Aligned_cols=407 Identities=14% Similarity=0.065 Sum_probs=283.5
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhh
Q 009108 97 KSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176 (543)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~ 176 (543)
..++.+|.++..++++.+..+++...++.+.|.+. |+|++.++. |++.+++.+++.++++++|+++||+|||+++.+
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 33445677777778888888888888888889876 589999999 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHhhcc
Q 009108 177 DAVPLAAGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (543)
Q Consensus 177 ~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 252 (543)
++++.+++.++++++ ++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence 999999999998876 4788899999999999999999999999999999999999999999999999999988877
Q ss_pred cCCCCCchHHHHHHhHHHHHHHHHHhcc-cCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccch
Q 009108 253 LAGNPLWWRTMFGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331 (543)
Q Consensus 253 l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (543)
+.....+||+.|++.+++.++..+..++ .+|+|+........+...+. .....+..+++...++...
T Consensus 175 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 242 (447)
T d1pw4a_ 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY------------PDDYNEKAEQELTAKQIFM 242 (447)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------------CCTHHHH
T ss_pred HhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhc------------ccchhhccccccchhhHHH
Confidence 6655468999999988888766554444 45555422111111000000 0000000111112223334
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCchhH--HHHHHHHHHHHHHHHHHHhhhccCChhHH
Q 009108 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--ASALVGAANVFGTAVASSLMDRQGRKNLL 408 (543)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 408 (543)
+..++++..+.......+.... ......+.+.++.+ .+.+.... ......++.+++.++.|++.||++|++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 318 (447)
T d1pw4a_ 243 QYVLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 318 (447)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHcCchHHHHHHHhhhhhhh----hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence 5566666665544443333332 34444555555443 45555433 56667788899999999999999987655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHHHHHHHH-HH
Q 009108 409 TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS-NF 487 (543)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~ 487 (543)
........+....+..... ....+.+...+..++.+.+ ..+..+....+..|.+|++.||++.|+.+.+.+++ .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~ 394 (447)
T d1pw4a_ 319 ATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 394 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTS---CCTTCHHHHHHHHHHHHHH-HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHh---cccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333222222111 1111222223333333322 22344556668899999999999999999998885 56
Q ss_pred HHHHhhHHHHHhhccccchhhhhHHHHHHHHhhheeccc
Q 009108 488 VIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVE 526 (543)
Q Consensus 488 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
++|.+.|.+.|..|+...|.+.+++.+++.++.+.+.++
T Consensus 395 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 395 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999998888888777776665554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.8e-29 Score=246.71 Aligned_cols=383 Identities=14% Similarity=0.045 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHhhhhHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHH
Q 009108 110 CLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (543)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 188 (543)
.+..+...+..+...+.+|. +.+++|+|..+. |++.+++.+++.++++++|+++||+|||++++++..+..++..+.
T Consensus 13 ~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~ 90 (417)
T d1pv7a_ 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 33445555556666777775 678899999999 999999999999999999999999999999999999999998888
Q ss_pred HHhhhHHH----HHHHHHHHhhhccccccchhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHhhcccCCCCCchHH
Q 009108 189 ATAQSVQT----MIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (543)
Q Consensus 189 ~~~~~~~~----l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~ 262 (543)
.+..+... .++.+++.+.+.+...........+..++ +++.+..+........|..+++.+++.+.+ .+|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 168 (417)
T d1pv7a_ 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQF 168 (417)
T ss_dssp HHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH--HCHHH
T ss_pred HHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc--ccccc
Confidence 88766554 34555666666555555555444444433 334567778888888899999999888764 45666
Q ss_pred HHHHhHHHHHH-HHHHhcccCCChhHHHhcCChHHHHHHHHHHhCchhhHHHHHHHHHhccCCCCcccchhhhhccchhH
Q 009108 263 MFGLAAIPSIL-LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (543)
Q Consensus 263 ~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (543)
.+........+ ..+..+..+|+++. ++++++.. ...+........+.++.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 169 VFWLGSGCALILAVLLFFAKTDAPSS---ATVANAVG----------------------ANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCSS---SCSSHHHH----------------------SCCCCCCHHHHHHHTTSSHHH
T ss_pred cccchhhHHHHHHHHHHHHhcccccc---hhhhhhhh----------------------hhccccccccccccccccccc
Confidence 66555555544 44455555665541 11111100 011111122223333444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCch------hHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 009108 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD------VAASALVGAANVFGTAVASSLMDRQGRKNLLTFSFTGM 415 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 415 (543)
............. ................... ........++..++..+.+++.||.++++.+..+..+.
T Consensus 224 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~ 299 (417)
T d1pv7a_ 224 FLSLYVIGVSCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHH----HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHH
Confidence 4333333333221 1112222222221111111 12345556778888999999999999999999888888
Q ss_pred HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhcCcccccccccccccChhhhhHHHHHHH-HHHHHHHHHHHHhhH
Q 009108 416 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL-GMHWISNFVIGLYFL 494 (543)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g 494 (543)
+++.+.+.+. .+.+...+..++.+.+.+. ..+....++.|.+|++.|+++.|+.. ....+|..++|.+.|
T Consensus 300 ~~~~~~~~~~--------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G 370 (417)
T d1pv7a_ 300 SVRIIGSSFA--------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHHTC--------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHhhhccccc--------cccchhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666542 1233334444444444443 34556668899999999999999864 567799999999999
Q ss_pred HHHHhhccccchhhhhHHHHHHHHhhheecccCCCCCHHH
Q 009108 495 SVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 534 (543)
Q Consensus 495 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (543)
.+.|..|++..|++.+++.++..++..+..++++..+.++
T Consensus 371 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 9999999999999999888888777777777666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=7.9e-15 Score=141.55 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccchhhhhhccC
Q 009108 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (543)
Q Consensus 144 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 223 (543)
+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+....++.|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 341 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhHHH-HHHHHHHHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhcc
Q 009108 224 PTEIRGALGSVN-QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (543)
Q Consensus 224 ~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 280 (543)
|+++|+++.++. +....+|..++|.+++++.+. .||++.|++.+++.++..++.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 566789999999999999876 79999999988888766554444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2e-12 Score=126.15 Aligned_cols=152 Identities=18% Similarity=0.127 Sum_probs=118.6
Q ss_pred hHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHhhHhhhhhhcccchhhhhhHHHHHHHHHHHH-----hhhHHHHHHH
Q 009108 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQSVQTMIIG 200 (543)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~ 200 (543)
...++.+.++.+..+. ++..+.+.++..++.++.|++.||++||+..........+....... ..+.+..+++
T Consensus 272 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349 (447)
T ss_dssp HHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred hhhhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4445666788888888 99999999999999999999999999887555444443333322221 3577778888
Q ss_pred HHHHhhhccccccchhhhhhccCCcccchhhhHHHHHHHHH-HHHHHHHhhcccCCCCCchHHHHHHhHHHHHHHHHHhc
Q 009108 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (543)
Q Consensus 201 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 279 (543)
-++.|++.+...+....++.|.+|++.|++++|+.+....+ |.+++|++.+++.+. .||+..|++.++..++..++..
T Consensus 350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHH
Confidence 88999998888888899999999999999999998877666 577789998888876 7899999888777666554443
Q ss_pred c
Q 009108 280 L 280 (543)
Q Consensus 280 ~ 280 (543)
+
T Consensus 429 ~ 429 (447)
T d1pw4a_ 429 V 429 (447)
T ss_dssp H
T ss_pred H
Confidence 3
|