Your job contains 1 sequence.
>009110
MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLN
PISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAA
WGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSET
SQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVY
TAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINE
WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTY
LAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS
RFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAA
NRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRA
RQY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009110
(543 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2015297 - symbol:MSL3 "MSCS-like 3" species:37... 1608 3.0e-165 1
TAIR|locus:2142414 - symbol:MSL2 "MSCS-like 2" species:37... 1545 1.4e-158 1
UNIPROTKB|P0AEB5 - symbol:ynaI "mechanosensitive channel ... 265 2.9e-22 1
UNIPROTKB|Q83CN5 - symbol:CBU_1075 "Mechanosensitive ion ... 223 8.9e-16 1
TIGR_CMR|CBU_1075 - symbol:CBU_1075 "membrane protein, pu... 223 8.9e-16 1
TIGR_CMR|CJE_0289 - symbol:CJE_0289 "mechanosensitive ion... 115 0.00047 2
>TAIR|locus:2015297 [details] [associations]
symbol:MSL3 "MSCS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005886 "plasma membrane" evidence=ISM] [GO:0016020
"membrane" evidence=IEA;ISS] [GO:0055085 "transmembrane transport"
evidence=IEA] [GO:0005216 "ion channel activity" evidence=IGI]
[GO:0006970 "response to osmotic stress" evidence=IGI] [GO:0009526
"plastid envelope" evidence=IDA] [GO:0009657 "plastid organization"
evidence=IGI] [GO:0010020 "chloroplast fission" evidence=IGI]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR006685 Pfam:PF00924 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0031969 GO:GO:0006970 GO:GO:0005216
GO:GO:0010020 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0004146
EMBL:AC079131 eggNOG:COG0668 HOGENOM:HOG000083399
ProtClustDB:CLSN2680522 GO:GO:0009526 EMBL:AC073943 EMBL:AY125504
EMBL:BT002720 IPI:IPI00544472 PIR:D96615 RefSeq:NP_176116.2
RefSeq:NP_974046.1 UniGene:At.28105 ProteinModelPortal:Q8L7W1
PaxDb:Q8L7W1 PRIDE:Q8L7W1 EnsemblPlants:AT1G58200.1
EnsemblPlants:AT1G58200.2 GeneID:842187 KEGG:ath:AT1G58200
TAIR:At1g58200 InParanoid:Q8L7W1 OMA:RFEEYLC PhylomeDB:Q8L7W1
Genevestigator:Q8L7W1 Uniprot:Q8L7W1
Length = 678
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 311/501 (62%), Positives = 383/501 (76%)
Query: 7 MQLSQELNIYNKFGCSNLYTT--GKGR--LVHINLSSLAMRRDAWGLNLLSHLCGPLNPI 62
+ LS +LN++ S + + GK R L LSS A R+D W L LL L G + P+
Sbjct: 8 LPLSHDLNVHKIHEASGFHNSAAGKNRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPV 67
Query: 63 STKCNVFICRSVLAPG-GIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPXXXXXXXXXW 121
S++CN F+CRS L+PG G + P+LKS A + TR YD L GNP +++LIP W
Sbjct: 68 SSRCNAFVCRSALSPGNGNEGPILKSTAV-IFTRVYDALGGNPHLVKLIPAVGILAFATW 126
Query: 122 GLVPLVRLGRT-IFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSET 180
GL PL+RL RT +F D + ++S T YI+ SYLQPLLLW+G L+CR LDP+VLPS
Sbjct: 127 GLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSA 186
Query: 181 SQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVY 240
Q +KQR+L F RS+STVLAF+ CLSSL+QQ+QKF E N+ D RNMGF+FAGKAVY
Sbjct: 187 GQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETNNP--ADTRNMGFSFAGKAVY 244
Query: 241 TAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVINE 300
TA WVAA SLFMELLGFSTQ+W REI TNFLSS+MIHAT+PFV+NE
Sbjct: 245 TAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNE 304
Query: 301 WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTY 360
WIQTKI GYEVSGTVE VGWWSPTIIRGDDREAVHIPNH+F+VN+VRNL+QKTHWRIKT+
Sbjct: 305 WIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTH 364
Query: 361 LAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS 420
LAISHLDV K+N+IVADMRKVL+KNPQ+EQQ++HRRVFLE+I+PE+Q+L IL+SCFVKTS
Sbjct: 365 LAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQALRILISCFVKTS 424
Query: 421 RFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAA 480
RFEEYLCVKEA+LLDLL VI HH AR+ATPIRTVQ++ +E +++ F+D +F ++AA
Sbjct: 425 RFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFSDIVF--NQAAM 482
Query: 481 NRPFLLIEPSYKISSDDKIKA 501
NR ++LIEPSYKI+SDD K+
Sbjct: 483 NRRYMLIEPSYKINSDDNSKS 503
>TAIR|locus:2142414 [details] [associations]
symbol:MSL2 "MSCS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005886 "plasma membrane" evidence=ISM] [GO:0016020
"membrane" evidence=IEA;ISS] [GO:0055085 "transmembrane transport"
evidence=IEA] [GO:0005216 "ion channel activity" evidence=IGI]
[GO:0009526 "plastid envelope" evidence=IDA] [GO:0009657 "plastid
organization" evidence=IGI] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0010020 "chloroplast fission" evidence=IGI] InterPro:IPR006685
Pfam:PF00924 GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0031969 EMBL:AL353995 GO:GO:0005216
GO:GO:0010020 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0004146
eggNOG:COG0668 EMBL:AK221831 EMBL:AK230015 EMBL:AK317509
IPI:IPI00533775 IPI:IPI00846450 IPI:IPI00991346 PIR:T49990
RefSeq:NP_001078567.1 RefSeq:NP_001190278.1 RefSeq:NP_568230.2
UniGene:At.48016 ProteinModelPortal:Q56X46 TCDB:1.A.23.7.1
PRIDE:Q56X46 EnsemblPlants:AT5G10490.1 GeneID:830913
KEGG:ath:AT5G10490 TAIR:At5g10490 HOGENOM:HOG000083399
InParanoid:Q56X46 OMA:YKINGED PhylomeDB:Q56X46
ProtClustDB:CLSN2680522 Genevestigator:Q56X46 GO:GO:0009526
Uniprot:Q56X46
Length = 673
Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
Identities = 309/526 (58%), Positives = 383/526 (72%)
Query: 1 MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLS--SLAMRRDAWGLN--LLS-HL 55
M T+QLS L + N + R +HI+ SL + G + LLS +L
Sbjct: 1 MALYGTLQLSHSLGLCRNQRFCNPENSAMRRRLHISNGPLSLGVPLGQHGFSNILLSNYL 60
Query: 56 CGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPXXXX 115
P+ + + F C S A G P +K A VLT+S+ ++ P + +L+P
Sbjct: 61 RRPICSVPCRTTAFRCHSFSASGKAIEPAVK-AVTVVLTKSHGLMQQFPFVYKLVPAVAL 119
Query: 116 XXXXXWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 175
WGLVP R GR I LN+ D WK+S T++++TSY+QPLLLW G ICR LDP+V
Sbjct: 120 LVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALDPVV 179
Query: 176 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 235
LP+E S+ VK R+LNFVRSLSTVLAFAYCLSSLIQQ QK +E ++ +D RNMGF FA
Sbjct: 180 LPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNP--SDTRNMGFQFA 237
Query: 236 GKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 295
GKA+Y+AVWVAAVSLFMELLGFSTQ+W REI TNFLSSVMIHAT+P
Sbjct: 238 GKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRP 297
Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
FV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG+DREA+HIPNHKFTVNVVRNL+QKTHW
Sbjct: 298 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHW 357
Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
RIKT+LAISHLDV+K+N+IVADMRKVLAKNP VEQQRLHRRVFLEN+ PE+Q+L+IL+SC
Sbjct: 358 RIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISC 417
Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTH 475
FVKTS EEYL VKEAILLDLL VISHHRAR+ATPIRT++K+Y+E D+EN PF ++++
Sbjct: 418 FVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMY-- 475
Query: 476 SRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQPQN 520
+ RP +LIEP+YKI+ +DK K+ RAA+ E+ + + P++
Sbjct: 476 GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENKGSNPKS 521
>UNIPROTKB|P0AEB5 [details] [associations]
symbol:ynaI "mechanosensitive channel YnaI monomer"
species:83333 "Escherichia coli K-12" [GO:0055085 "transmembrane
transport" evidence=IEA] [GO:0071470 "cellular response to osmotic
stress" evidence=IGI] [GO:0005887 "integral to plasma membrane"
evidence=RCA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008381 "mechanically-gated ion channel activity"
evidence=IGI;ISS] [GO:0006811 "ion transport" evidence=ISS]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] InterPro:IPR006685 InterPro:IPR006686
InterPro:IPR011014 InterPro:IPR011066 Pfam:PF00924 PROSITE:PS01246
GO:GO:0016021 GO:GO:0005886 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0055085
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0004146 SUPFAM:SSF82689
SUPFAM:SSF82861 eggNOG:COG0668 PIR:E64882 RefSeq:NP_415846.1
RefSeq:YP_489600.1 ProteinModelPortal:P0AEB5 SMR:P0AEB5
EnsemblBacteria:EBESCT00000000495 EnsemblBacteria:EBESCT00000015742
GeneID:12931148 GeneID:945898 KEGG:ecj:Y75_p1307 KEGG:eco:b1330
PATRIC:32117936 EchoBASE:EB3683 EcoGene:EG13924
HOGENOM:HOG000060775 KO:K16052 OMA:ERKTIMF ProtClustDB:CLSK880101
BioCyc:EcoCyc:MONOMER0-82 BioCyc:ECOL316407:JW1323-MONOMER
Genevestigator:P0AEB5 Uniprot:P0AEB5
Length = 343
Score = 265 (98.3 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 75/268 (27%), Positives = 128/268 (47%)
Query: 188 VLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAA 247
V++F+ + + L LI Q +K + D T AR M + + + V
Sbjct: 77 VIDFICTSLIAVILTIKLFLLINQFEKQQIKKG-RDITSARIMS-----RIIKITIIVVL 130
Query: 248 VSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVINEWIQTKIQ 307
V L+ E G S ++I +NF S +M++ +PF I +WI++ +
Sbjct: 131 VLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDR 190
Query: 308 GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLD 367
E GTV +GW I D+R +++PN F+ V N + T+ RI T + + + D
Sbjct: 191 NIE--GTVAEIGWRITKITTFDNRP-LYVPNSLFSSISVENPGRMTNRRITTTIGLRYED 247
Query: 368 VHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYL 426
KV IV +R++L +P ++Q R+ L N SLNI+V CF KT+ + E+L
Sbjct: 248 AAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWL 303
Query: 427 CVKEAILLDLLHVISHHRARMATPIRTV 454
++ + L ++ ++ H A A P +T+
Sbjct: 304 AAQQDVYLKIIDIVQSHGADFAFPSQTL 331
>UNIPROTKB|Q83CN5 [details] [associations]
symbol:CBU_1075 "Mechanosensitive ion channel"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006685 InterPro:IPR006686
InterPro:IPR011014 InterPro:IPR011066 Pfam:PF00924 PROSITE:PS01246
GO:GO:0016020 GO:GO:0055085 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0004146 SUPFAM:SSF82689
SUPFAM:SSF82861 HOGENOM:HOG000060775 KO:K16052 OMA:WAHIGVA
RefSeq:NP_820074.1 ProteinModelPortal:Q83CN5 GeneID:1208976
KEGG:cbu:CBU_1075 PATRIC:17930877 ProtClustDB:CLSK914522
BioCyc:CBUR227377:GJ7S-1066-MONOMER Uniprot:Q83CN5
Length = 383
Score = 223 (83.6 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 53/219 (24%), Positives = 112/219 (51%)
Query: 238 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 295
A T V + A L M L +G ++ NF +MI+ +P
Sbjct: 136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195
Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
F + +WI++ + ++ GTVE++GW T IR D+ ++++PN + V N S+ T+
Sbjct: 196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252
Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
R+K + + + D K+ + + ++L +P+++ + + +F+ SLN++V
Sbjct: 253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309
Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 454
F KT+ + ++ +++ I+L ++++I+ + A A P +T+
Sbjct: 310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348
>TIGR_CMR|CBU_1075 [details] [associations]
symbol:CBU_1075 "membrane protein, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0016020 "membrane" evidence=ISS]
InterPro:IPR006685 InterPro:IPR006686 InterPro:IPR011014
InterPro:IPR011066 Pfam:PF00924 PROSITE:PS01246 GO:GO:0016020
GO:GO:0055085 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0004146 SUPFAM:SSF82689
SUPFAM:SSF82861 HOGENOM:HOG000060775 KO:K16052 OMA:WAHIGVA
RefSeq:NP_820074.1 ProteinModelPortal:Q83CN5 GeneID:1208976
KEGG:cbu:CBU_1075 PATRIC:17930877 ProtClustDB:CLSK914522
BioCyc:CBUR227377:GJ7S-1066-MONOMER Uniprot:Q83CN5
Length = 383
Score = 223 (83.6 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 53/219 (24%), Positives = 112/219 (51%)
Query: 238 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 295
A T V + A L M L +G ++ NF +MI+ +P
Sbjct: 136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195
Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
F + +WI++ + ++ GTVE++GW T IR D+ ++++PN + V N S+ T+
Sbjct: 196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252
Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
R+K + + + D K+ + + ++L +P+++ + + +F+ SLN++V
Sbjct: 253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309
Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 454
F KT+ + ++ +++ I+L ++++I+ + A A P +T+
Sbjct: 310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348
>TIGR_CMR|CJE_0289 [details] [associations]
symbol:CJE_0289 "mechanosensitive ion channel family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0005216
"ion channel activity" evidence=ISS] [GO:0006811 "ion transport"
evidence=ISS] [GO:0016020 "membrane" evidence=ISS]
InterPro:IPR006685 InterPro:IPR011014 InterPro:IPR011066
Pfam:PF00924 GO:GO:0016020 GO:GO:0055085 EMBL:CP000025
GenomeReviews:CP000025_GR InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0004146 SUPFAM:SSF82689 SUPFAM:SSF82861 eggNOG:COG0668
KO:K16052 RefSeq:YP_178311.1 ProteinModelPortal:Q5HWM4
STRING:Q5HWM4 GeneID:3231051 KEGG:cjr:CJE0289 PATRIC:20042276
HOGENOM:HOG000104707 OMA:YCFSKTV ProtClustDB:CLSK872482
BioCyc:CJEJ195099:GJC0-294-MONOMER Uniprot:Q5HWM4
Length = 627
Score = 115 (45.5 bits), Expect = 0.00048, Sum P(2) = 0.00047
Identities = 45/201 (22%), Positives = 81/201 (40%)
Query: 233 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHA 292
N K +Y + + A+ + LGF+ ++I NF +S+++
Sbjct: 368 NLIIKILYFVIIIIALLYILAQLGFNISAIIASLGIGGLAVALAAKDIIANFFASILLLF 427
Query: 293 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK 352
F +W++ + G E GTV G T IR D V +PN ++N S++
Sbjct: 428 DNSFNQGDWVE--VSGIE--GTVVETGL-RKTTIRTFDNCLVFLPNSTIMGANIKNWSKR 482
Query: 353 THWR-IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQV---EQQRL----HRRVFLENIN 403
R ++ YL + + K+ V D+R+ L + V E L H + +N+
Sbjct: 483 RMGRHVRMYLGVGYDATPEKLEQCVKDLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLV 542
Query: 404 PESQSLNILVSCFVKTSRFEE 424
+ +C+V S F +
Sbjct: 543 SINDLEGYKNACYVALSEFAD 563
Score = 52 (23.4 bits), Expect = 0.00048, Sum P(2) = 0.00047
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 408 SLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIP 467
S+NI + ++K +++ +++++L+ + +I + A P R+ IY +EN+P
Sbjct: 565 SINIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRS---IY----IENLP 617
Query: 468 FAD 470
D
Sbjct: 618 PLD 620
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 543 519 0.00089 119 3 11 22 0.47 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 628 (67 KB)
Total size of DFA: 305 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.74u 0.12s 43.86t Elapsed: 00:00:02
Total cpu time: 43.74u 0.12s 43.86t Elapsed: 00:00:02
Start: Tue May 21 02:14:46 2013 End: Tue May 21 02:14:48 2013