BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009112
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 179/468 (38%), Positives = 263/468 (56%), Gaps = 11/468 (2%)
Query: 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYC 136
TL+ E ++ F ++G+K + D L A + YRG S L+L+P +T EV I K
Sbjct: 12 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLA 71
Query: 137 NSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196
N +A+VPQGGNTGLVGG P EV+I++ + I D S + EAG IL+ +
Sbjct: 72 NEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIREIDTSSNTITVEAGAILQRVQE 131
Query: 197 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 256
+ + PL LGA+GSC IGGN+STNAGG + YG LG+E VLA+G V ++L
Sbjct: 132 KAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDXALGVEVVLADGRVXNLL 191
Query: 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316
L+KDNTGYDL+ LFIG+EG+LGI+T ++ PK +V AF+ + KLL A
Sbjct: 192 SKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251
Query: 317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEA 376
+ + L++FE + +D + + R+P + + +YVLIE + + R LE+
Sbjct: 252 QGEAAGNLTSFELIAETPLDFSVRHANN-RDPLEAR-YPWYVLIELSSPRDDA-RAALES 308
Query: 377 FLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVE 436
L E G++ D IA + Q +FW++RE I+ A G K+D+S+PV + +E
Sbjct: 309 ILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIE 368
Query: 437 KMRQ---RLGETAKVIGYGHLGDGNLHLNISAPRYDDMI-----FAQIEPYVYEWTSEHR 488
+ L A+ + +GHLGDGN+H N+S P D + + V+E
Sbjct: 369 QANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLG 428
Query: 489 GSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVL 536
GSISAEHG+G+ K +++ K ++L SIK LLDP+GI NP KV+
Sbjct: 429 GSISAEHGIGVXKRDELAEVKDKTAIELXRSIKALLDPHGIXNPGKVV 476
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/460 (21%), Positives = 190/460 (41%), Gaps = 63/460 (13%)
Query: 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDE----VIINMGSMNNII 174
++L P ++V +I+ L ++P GG T + G + DE + ++ MN I+
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 234
D+ + EAG + L L + G+ + + +GG +ST A G++ YG
Sbjct: 268 WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYG 327
Query: 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294
++ V+ ++ V G VI+ + +TG D+ H +GSEG+LG++T+ +I P
Sbjct: 328 NIEDLVVHMKVVTPRG-VIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPE 386
Query: 295 SVNLAFLACKDYFSCQKLLRE-AKRKLGEILSAFEFLDNQSMD-----------LVLTYL 342
+A ++ LRE AK++ ++ +DNQ + ++L
Sbjct: 387 YQKYGSVAFPNFEQGVACLREIAKQRCAP--ASIRLMDNQQFQFGHALKPQVSSIFTSFL 444
Query: 343 EGVRNPFSSSMHNF--------YVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQ 394
+G++ + + F +L E G E + + + + +++ GGL + +
Sbjct: 445 DGLKKFYITKFKGFDPNQLSVATLLFE--GDREKVLQHEKQVYDIAAKFGGLAA----GE 498
Query: 395 DINQASSFWRIREGIAEALMKAGAVY-----KYDLSLPVEKMYDLVEKMRQRLGETAKVI 449
D Q + + G Y ++ S P +++ DL +++R+ K
Sbjct: 499 DNGQRGYLLTY---VIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEK 555
Query: 450 G--YGHLGDGNL-----------------HLNISAPRYDDMIFAQIEPYVYEWTSEHRGS 490
G + L + + IS P +F Q E E + GS
Sbjct: 556 GVQFPPLSTCRVTQTYDAGACIFFYFAFNYRGISDPL---AVFEQTEAAAREEILANGGS 612
Query: 491 ISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGIL 530
+S HG+G ++ + S S ++ S+K +DP I
Sbjct: 613 LSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIF 652
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 99/460 (21%), Positives = 190/460 (41%), Gaps = 63/460 (13%)
Query: 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDE----VIINMGSMNNII 174
++L P ++V +I+ L ++P GG T + G + DE + ++ MN I+
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 234
D+ + EAG + L L + G+ + + +GG +ST A G++ YG
Sbjct: 268 WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYG 327
Query: 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294
++ V+ ++ V G VI+ + +TG D+ H +GSEG+LG++T+ +I P
Sbjct: 328 NIEDLVVHMKVVTPRG-VIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPE 386
Query: 295 SVNLAFLACKDYFSCQKLLRE-AKRKLGEILSAFEFLDNQSMD-----------LVLTYL 342
+A ++ LRE AK++ ++ +DNQ + ++L
Sbjct: 387 YQKYGSVAFPNFEQGVACLREIAKQRCAP--ASIRLMDNQQFQFGHALKPQVSSIFTSFL 444
Query: 343 EGVRNPFSSSMHNF--------YVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQ 394
+G++ + + F +L E G E + + + + +++ GGL + +
Sbjct: 445 DGLKKFYITKFKGFDPNQLSVATLLFE--GDREKVLQHEKQVYDIAAKFGGLAA----GE 498
Query: 395 DINQASSFWRIREGIAEALMKAGAVY-----KYDLSLPVEKMYDLVEKMRQRLGETAKVI 449
D Q + + G Y ++ S P +++ DL +++R+ K
Sbjct: 499 DNGQRGYLLTY---VIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEK 555
Query: 450 G--YGHLGDGNL-----------------HLNISAPRYDDMIFAQIEPYVYEWTSEHRGS 490
G + L + + IS P +F Q E E + GS
Sbjct: 556 GVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPL---AVFEQTEAAAREEILANGGS 612
Query: 491 ISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGIL 530
+S HG+G ++ + S S ++ S+K +DP I
Sbjct: 613 LSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIF 652
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 99/460 (21%), Positives = 190/460 (41%), Gaps = 63/460 (13%)
Query: 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDE----VIINMGSMNNII 174
++L P ++V +I+ L ++P GG T + G + DE + ++ MN I+
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 234
D+ + EAG + L L + G+ + + +GG +ST A G++ YG
Sbjct: 268 WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYG 327
Query: 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294
++ V+ ++ V G VI+ + +TG D+ H +GSEG+LG++T+ +I P
Sbjct: 328 NIEDLVVHMKVVTPRG-VIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPE 386
Query: 295 SVNLAFLACKDYFSCQKLLRE-AKRKLGEILSAFEFLDNQSMD-----------LVLTYL 342
+A ++ LRE AK++ ++ +DNQ + ++L
Sbjct: 387 YQKYGSVAFPNFEQGVACLREIAKQRCAP--ASIHLMDNQQFQFGHALKPQVSSIFTSFL 444
Query: 343 EGVRNPFSSSMHNF--------YVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQ 394
+G++ + + F +L E G E + + + + +++ GGL + +
Sbjct: 445 DGLKKFYITKFKGFDPNQLSVATLLFE--GDREKVLQHEKQVYDIAAKFGGLAA----GE 498
Query: 395 DINQASSFWRIREGIAEALMKAGAVY-----KYDLSLPVEKMYDLVEKMRQRLGETAKVI 449
D Q + + G Y ++ S P +++ DL +++R+ K
Sbjct: 499 DNGQRGYLLTY---VIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEK 555
Query: 450 G--YGHLGDGNL-----------------HLNISAPRYDDMIFAQIEPYVYEWTSEHRGS 490
G + L + + IS P +F Q E E + GS
Sbjct: 556 GVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPL---AVFEQTEAAAREEILANGGS 612
Query: 491 ISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGIL 530
+S HG+G ++ + S S ++ S+K +DP I
Sbjct: 613 LSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIF 652
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 7/184 (3%)
Query: 114 RGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDE---VIINMGSM 170
+ + L++ P + EV ++++ + + ++P GG + +VG PV +E V I+M M
Sbjct: 135 KNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRM 194
Query: 171 NNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRL 230
N ++ D+ + G + L L G + D + +GG ++T + G +
Sbjct: 195 NKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQS 254
Query: 231 VRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTK--VSIH 288
+YG + + V G + L + G + KH+ +GSEG+LGI+T+ + +H
Sbjct: 255 DKYGDIEDMAVSFRTVTPTGTL--ELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVH 312
Query: 289 TPPK 292
P+
Sbjct: 313 AVPQ 316
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 489 GSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVL 536
GS+S HG+G + + + + S+K+ +DP I NP K++
Sbjct: 537 GSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDICNPRKLI 584
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 20/225 (8%)
Query: 83 VSYFKELLGEKSVIQDEDVLLAANEDWM--RKYRGSSKLLLQPRTTNEVSQILKYCNSRL 140
V F+ LLG+ +V+ + D L+ N+ M + + T +V ++K CN
Sbjct: 22 VQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHK 81
Query: 141 LAV--VPQGGNTGLVGGSVPV-FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 197
+ + + G N G G + PV +VI+++ MN II D + E G + +
Sbjct: 82 IPIWTISTGRNFGY-GSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDY 140
Query: 198 LDDHGFIMPLDLGAKGSCQIGGNV-STNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDM- 255
+ ++ +P+ L I G V +T G+ YG G+E VLANGDV
Sbjct: 141 IQENN--LPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTG 198
Query: 256 LGTLRKDNT--------GYDLKHLFIGSEGSLGIVTKVSIHTPPK 292
+G + NT G L +F ++ + GI TK+ PK
Sbjct: 199 MGGVPGSNTWQIFKWGYGPTLDGMF--TQANYGICTKMGFWLMPK 241
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 20/225 (8%)
Query: 83 VSYFKELLGEKSVIQDEDVLLAANEDWM--RKYRGSSKLLLQPRTTNEVSQILKYCNSRL 140
V F+ LLG+ +V+ + D L+ N+ M + + T +V ++K CN
Sbjct: 21 VQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHK 80
Query: 141 LAV--VPQGGNTGLVGGSVPV-FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 197
+ + + G N G G + PV +VI+++ MN II D + E G + +
Sbjct: 81 IPIWTISTGRNFGY-GSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDY 139
Query: 198 LDDHGFIMPLDLGAKGSCQIGGNV-STNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDM- 255
+ ++ +P+ L I G V +T G+ YG G+E VLANGDV
Sbjct: 140 IQENN--LPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTG 197
Query: 256 LGTLRKDNT--------GYDLKHLFIGSEGSLGIVTKVSIHTPPK 292
+G + NT G L +F ++ + GI TK+ PK
Sbjct: 198 MGGVPGSNTWQIFKWGYGPTLDGMF--TQANYGICTKMGFWLMPK 240
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 52/243 (21%)
Query: 82 DVSYFKEL-LGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRL 140
D SY K + + + D+D LA+ ++ PR +V I+ N
Sbjct: 48 DGSYMKPTHTHDPTHVMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFS 94
Query: 141 LAVVPQ--GGNTGLVGGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSF 197
+ P G N+G G + V V+++MG +MN ++ V V A C++E V++
Sbjct: 95 FPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLE------VNVEGAYCVVEPGVTY 148
Query: 198 LDDHGFIMPLDLGAKGSCQI----GGNVSTNA--GGLRLVRYGSLHGNVLGLEAVLANGD 251
D H ++ +L K + GG+V NA G+ YG G+E VLANG+
Sbjct: 149 HDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGE 208
Query: 252 VI-------------DMLGTLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIH 288
++ + +G +D + HLF + S+ ++GIVTK+ I
Sbjct: 209 LLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIW 268
Query: 289 TPP 291
P
Sbjct: 269 LMP 271
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLG 210
G + V V+++MG +MN ++ + V E G +L ++L+ + + LD+
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVP 169
Query: 211 AKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVI-------------DMLG 257
+ G + GN G+ YG G+E VLANG+++ + +G
Sbjct: 170 SLGGGSVLGNAVER--GVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMG 227
Query: 258 TLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+D + HLF + S+ ++GIVTK+ I P
Sbjct: 228 LKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLG 210
G + V V+++MG +MN ++ + V E G +L ++L+ + + LD+
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVP 169
Query: 211 AKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVI-------------DMLG 257
+ G + GN G+ YG G+E VLANG+++ + +G
Sbjct: 170 SLGGGSVLGNAVER--GVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMG 227
Query: 258 TLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+D + HLF + S+ ++GIVTK+ I P
Sbjct: 228 LKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK 212
G + V V+++MG +MN ++ V V A C++E V++ D H ++ +L K
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLE------VNVEGAYCVVEPGVTYHDLHNYLEANNLRDK 163
Query: 213 GSCQI----GGNVSTNA--GGLRLVRYGSLHGNVLGLEAVLANGDVI------------- 253
+ GG+V NA G+ YG G+E VLANG+++
Sbjct: 164 LWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRP 223
Query: 254 DMLGTLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+ +G +D + HLF + S+ ++GIVTK+ I P
Sbjct: 224 ETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK 212
G + V V+++MG +MN ++ V V A C++E V++ D H ++ +L K
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLE------VNVEGAYCVVEPGVTYHDLHNYLEANNLRDK 163
Query: 213 GSCQI----GGNVSTNA--GGLRLVRYGSLHGNVLGLEAVLANGDVI------------- 253
+ GG+V NA G+ YG G+E VLANG+++
Sbjct: 164 LWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRP 223
Query: 254 DMLGTLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+ +G +D + HLF + S+ ++GIVTK+ I P
Sbjct: 224 ETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK 212
G + V V+++MG +MN ++ V V A C++E V++ D H ++ +L K
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLE------VNVEGAYCVVEPGVTYHDLHNYLEANNLRDK 163
Query: 213 GSCQI----GGNVSTNA--GGLRLVRYGSLHGNVLGLEAVLANGDVI------------- 253
+ GG+V NA G+ YG G+E VLANG+++
Sbjct: 164 LWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRP 223
Query: 254 DMLGTLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+ +G +D + HLF + S+ ++GIVTK+ I P
Sbjct: 224 ETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK 212
G + V V+++MG +MN ++ V V A C++E V++ D H ++ +L K
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLE------VNVEGAYCVVEPGVTYHDLHNYLEANNLRDK 163
Query: 213 GSCQI----GGNVSTNA--GGLRLVRYGSLHGNVLGLEAVLANGDVI------------- 253
+ GG+V NA G+ YG G+E VLANG+++
Sbjct: 164 LWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRP 223
Query: 254 DMLGTLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+ +G +D + HLF + S+ ++GIVTK+ I P
Sbjct: 224 ETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK 212
G + V V+++MG +MN ++ V V A C++E V++ D H ++ +L K
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLE------VNVEGAYCVVEPGVTYHDLHNYLEANNLRDK 163
Query: 213 GSCQI----GGNVSTNA--GGLRLVRYGSLHGNVLGLEAVLANGDVI------------- 253
+ GG+V NA G+ YG G+E VLANG+++
Sbjct: 164 LWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRP 223
Query: 254 DMLGTLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+ +G +D + HLF + S+ ++GIVTK+ I P
Sbjct: 224 ETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 163 VIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVS 222
++I+M ++N I + D G+ ++ +AG L+ L+ HG +P+ G + +GG +
Sbjct: 12 LVIDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTR-QVTVGGAIG 70
Query: 223 TNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIV 282
+ G GS +V +E + ANG+V L DL +G G GI+
Sbjct: 71 CDIHGKNHHSAGSFGNHVRSMELLTANGEVRH----LTPAGPDSDLFWATVGGNGLTGII 126
Query: 283 TKVSIHTPPKLSSVNLA 299
+ +I P ++ +A
Sbjct: 127 LRATIEMTPTETAYFIA 143
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 163 VIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVS 222
++I+M ++N I + D G+ ++ +AG L+ L+ HG +P+ G + +GG +
Sbjct: 77 LVIDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTR-QVTVGGAIG 135
Query: 223 TNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIV 282
+ G GS +V +E + ANG+V L DL +G G GI+
Sbjct: 136 CDIHGKNHHSAGSFGNHVRSMELLTANGEVRH----LTPAGPDSDLFWATVGGNGLTGII 191
Query: 283 TKVSIHTPPKLSSVNLA 299
+ +I P ++ +A
Sbjct: 192 LRATIEMTPTETAYFIA 208
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 51/228 (22%)
Query: 96 IQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGLV 153
+ D+D LA+ ++ PR +V I+ N + P G N+G
Sbjct: 63 VMDQDYFLAS-------------AIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYG 109
Query: 154 GGSVPVFDEVIINMG-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK 212
G + V V+++MG +MN ++ V V A C++E V++ D H ++ +L K
Sbjct: 110 GAAPRVSGSVVLDMGKNMNRVLE------VNVEGAYCVVEPGVTYHDLHNYLEANNLRDK 163
Query: 213 GSCQI----GGNVSTNA--GGLRLVRYGSLHGNVLGLEAVLANGDVI------------- 253
+ GG+V NA G+ YG G+E VLANG+++
Sbjct: 164 LWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRP 223
Query: 254 DMLGTLRKDNTGYDLKHLF----------IGSEGSLGIVTKVSIHTPP 291
+ +G +D HLF + S+ ++GIVTK+ I P
Sbjct: 224 ETMGLKPEDQPWSKTAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMP 271
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV------GGSVP 158
A ++W ++ + + P+T +V ++ + + + P+G G G +V
Sbjct: 24 AYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANV- 82
Query: 159 VFDEVIINMGSMN--NIITFDKGSGV--LVCEAGCILENLVSFLDDHGFIMPLDLGAKGS 214
E +I +M N IT + G V + AG +E +V+ L H +L A G
Sbjct: 83 ---EKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGW-ANLPAPGV 138
Query: 215 CQIGGNVSTNAGGLRLV----------RYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262
IGG ++ NA G L YGSL V L AV+ NG + R D
Sbjct: 139 LSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRND 196
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV------GGSVP 158
A ++W ++ + + P+T +V ++ + + + P+G G G +V
Sbjct: 24 AYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMHGWTPLTVEKGANV- 82
Query: 159 VFDEVIINMGSMN--NIITFDKGSGV--LVCEAGCILENLVSFLDDHGFIMPLDLGAKGS 214
E +I +M N IT + G V + AG +E +V+ L H +L A G
Sbjct: 83 ---EKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGW-ANLPAPGV 138
Query: 215 CQIGGNVSTNAGGLRLV----------RYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262
IGG ++ NA G L YGSL V L AV+ NG + R D
Sbjct: 139 LSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRND 196
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 217 IGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE 276
+GG +S + RYG NV L+ V NGDV+ + +L +G
Sbjct: 168 VGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTC-----SEIENSELFFSVLGGL 222
Query: 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMD 336
G GI+T+ + P V + +R + E E+L +Q +
Sbjct: 223 GQFGIITRARVLLQPAPDXV--------------RWIRVVYTEFDEFTQDAEWLVSQKNE 268
Query: 337 LVLTYLEG 344
Y+EG
Sbjct: 269 SSFDYVEG 276
>pdb|1F0X|A Chain A, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme.
pdb|1F0X|B Chain B, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme
Length = 571
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 110 MRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP-----VFDEVI 164
R +G + ++ P + E+ ++LK C + ++ Q NTGL GS P D VI
Sbjct: 39 FRSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVI 98
Query: 165 INMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK--GSCQIGGNVS 222
I+ ++ + KG VL G L +L L G +G+ G+ IGG +
Sbjct: 99 ISTLRLDKLHVLGKGEQVLAY-PGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGG-IC 156
Query: 223 TNAGG 227
N+GG
Sbjct: 157 NNSGG 161
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
pdb|2YVS|B Chain B, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
Length = 219
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 239 NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNL 298
VLGL G + G + K+ GYDL LF+GS G LG +V + P + L
Sbjct: 61 EVLGLTFRTPKGRRVRAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFL 120
>pdb|3OR2|A Chain A, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
pdb|3OR2|D Chain D, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
Length = 435
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 437 KMRQRLGETAKVIGYGHL----GDGNLHLNISAPRYDDMIFAQIEPYVYEWTSE 486
K R+RLGET K +G+ L G + ++S PR++ IF + E W+ +
Sbjct: 372 KNRERLGETMKRVGFQKLLEVTGTKAVPQHVSEPRHNPYIFFKEEEVPGGWSRD 425
>pdb|3OR1|A Chain A, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
pdb|3OR1|D Chain D, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
Length = 437
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 437 KMRQRLGETAKVIGYGHL----GDGNLHLNISAPRYDDMIFAQIEPYVYEWTSE 486
K R+RLGET K +G+ L G + ++S PR++ IF + E W+ +
Sbjct: 374 KNRERLGETMKRVGFQKLLEVTGTKAVPQHVSEPRHNPYIFFKEEEVPGGWSRD 427
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 217 IGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE 276
+GG +S + R+G NVL ++ + +G+++ L DL +G
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVLGGL 211
Query: 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDY--FSCQKLLREAKRKLG 321
G G++T+ I P + L D+ FS + A R G
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGG 258
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 217 IGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE 276
+GG +S + R+G NVL ++ + +G+++ L DL +G
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVLGGL 211
Query: 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDY--FSCQKLLREAKRKLG 321
G G++T+ I P + L D+ FS + A R G
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGG 258
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 217 IGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE 276
+GG +S + R+G NVL ++ + +G+++ L DL +G
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVLGGL 211
Query: 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDY--FSCQKLLREAKRKLG 321
G G++T+ I P + L D+ FS + A R G
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGG 258
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 217 IGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE 276
+GG +S + R+G NVL ++ + +G+++ L DL +G
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVLGGL 211
Query: 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDY--FSCQKLLREAKRKLG 321
G G++T+ I P + L D+ FS + A R G
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGG 258
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 217 IGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE 276
+GG +S + R+G NVL ++ + +G+++ L DL +G
Sbjct: 157 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVLGGL 211
Query: 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDY--FSCQKLLREAKRKLG 321
G G++T+ I P + L D+ FS + A R G
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGG 258
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 217 IGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE 276
+GG +S + R+G NVL ++ + +G+++ L DL +G
Sbjct: 175 VGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVLGGL 229
Query: 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDY--FSCQKLLREAKRKLG 321
G G++T+ I P + D+ FS + A R G
Sbjct: 230 GQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRPGG 276
>pdb|3FOK|A Chain A, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|B Chain B, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|C Chain C, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|D Chain D, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|E Chain E, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|F Chain F, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|G Chain G, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|H Chain H, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|I Chain I, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
pdb|3FOK|J Chain J, Crystal Structure Of Cgl0159 From Corynebacterium
Glutamicum (Brevibacterium Flavum). Northeast Structural
Genomics Target Cgr115
Length = 307
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 203 FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTL 259
FI+ D A+G+ +G N + A L+ ++ + G++ VL D+ID L L
Sbjct: 45 FIVAADHPARGALAVGDNETAXANRYELLERXAIALSRPGVDGVLGTPDIIDDLAAL 101
>pdb|3TX1|A Chain A, X-Ray Crystal Structure Of Listeria Monocytogenes Egd-E
Udp-N- Acetylenolpyruvylglucosamine Reductase (Murb)
Length = 322
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 26/144 (18%)
Query: 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMN 171
K G++ + + P+T E +++ YC+ + + G + L II G +
Sbjct: 50 KTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNL-----------IIKDGGIR 98
Query: 172 NII-------TFDKGSGVLVCEAGCILENLVSF-LDDHGFIMPLDLGAKGSCQIGGNVST 223
+I T ++ + +V +G L + F L++ + G GS IGG +
Sbjct: 99 GVILHLDLLQTIERNNTQIVAMSGAKLIDTAKFALNESLSGLEFACGIPGS--IGGALHM 156
Query: 224 NAGGLRLVRYGSLHGNVLGLEAVL 247
NAG YG +VL VL
Sbjct: 157 NAGA-----YGGEISDVLEAATVL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,913,079
Number of Sequences: 62578
Number of extensions: 672579
Number of successful extensions: 1906
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1854
Number of HSP's gapped (non-prelim): 72
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)