Query 009112
Match_columns 543
No_of_seqs 345 out of 2580
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 20:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1232 Proteins containing th 100.0 5E-102 1E-106 765.7 34.8 485 51-536 23-511 (511)
2 PLN02805 D-lactate dehydrogena 100.0 6.8E-78 1.5E-82 654.7 52.7 452 75-538 91-551 (555)
3 PRK11230 glycolate oxidase sub 100.0 6.5E-75 1.4E-79 628.1 52.1 451 80-538 19-474 (499)
4 TIGR00387 glcD glycolate oxida 100.0 6.7E-70 1.5E-74 579.4 45.0 408 120-534 1-413 (413)
5 COG0277 GlcD FAD/FMN-containin 100.0 8.4E-64 1.8E-68 540.7 46.3 446 86-538 2-458 (459)
6 PRK11183 D-lactate dehydrogena 100.0 1.1E-49 2.3E-54 420.7 33.7 432 80-534 3-551 (564)
7 KOG1231 Proteins containing th 100.0 2.5E-50 5.5E-55 408.3 15.8 440 85-539 29-500 (505)
8 PRK11282 glcE glycolate oxidas 100.0 1.2E-44 2.5E-49 373.6 28.3 346 125-537 3-350 (352)
9 KOG1233 Alkyl-dihydroxyacetone 100.0 1.6E-43 3.5E-48 350.8 32.7 453 66-536 103-613 (613)
10 PLN02441 cytokinin dehydrogena 100.0 3.4E-42 7.4E-47 369.9 39.1 426 93-536 41-517 (525)
11 TIGR01679 bact_FAD_ox FAD-link 100.0 3.6E-35 7.9E-40 312.7 29.0 380 107-531 2-410 (419)
12 TIGR01678 FAD_lactone_ox sugar 100.0 4.2E-34 9E-39 305.0 31.7 200 107-317 5-204 (438)
13 TIGR01677 pln_FAD_oxido plant- 100.0 3.3E-33 7.2E-38 304.1 27.0 206 104-317 19-234 (557)
14 TIGR01676 GLDHase galactonolac 100.0 3.9E-33 8.5E-38 299.6 22.5 201 107-318 52-252 (541)
15 PF02913 FAD-oxidase_C: FAD li 100.0 4E-33 8.6E-38 275.7 14.6 238 292-535 1-248 (248)
16 PLN02465 L-galactono-1,4-lacto 100.0 1.2E-30 2.6E-35 282.6 34.1 202 106-318 86-287 (573)
17 PF01565 FAD_binding_4: FAD bi 100.0 2.6E-28 5.7E-33 221.4 12.6 139 117-256 1-139 (139)
18 PRK13905 murB UDP-N-acetylenol 99.9 1.6E-25 3.6E-30 228.3 14.9 173 99-293 16-193 (298)
19 PRK14652 UDP-N-acetylenolpyruv 99.9 3E-24 6.4E-29 218.5 16.0 192 79-293 3-196 (302)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 4E-24 8.7E-29 218.0 15.9 189 81-292 5-197 (305)
21 PRK13906 murB UDP-N-acetylenol 99.9 1E-23 2.2E-28 215.0 18.5 191 79-292 3-197 (307)
22 PRK14653 UDP-N-acetylenolpyruv 99.9 2.4E-22 5.1E-27 203.4 15.4 190 80-293 3-194 (297)
23 KOG4730 D-arabinono-1, 4-lacto 99.9 3.1E-22 6.8E-27 204.2 16.1 188 112-309 45-232 (518)
24 TIGR00179 murB UDP-N-acetyleno 99.9 1.8E-22 4E-27 204.1 13.2 164 110-291 6-174 (284)
25 PRK13903 murB UDP-N-acetylenol 99.9 1.3E-21 2.8E-26 202.7 14.4 173 100-293 19-197 (363)
26 PRK14649 UDP-N-acetylenolpyruv 99.8 9.5E-21 2.1E-25 192.4 13.3 174 100-293 7-193 (295)
27 PRK14650 UDP-N-acetylenolpyruv 99.8 2.1E-19 4.6E-24 181.4 12.9 179 94-293 13-195 (302)
28 COG0812 MurB UDP-N-acetylmuram 99.8 1.5E-18 3.3E-23 172.6 16.1 173 100-292 7-183 (291)
29 PRK00046 murB UDP-N-acetylenol 99.8 9.8E-19 2.1E-23 179.1 12.1 171 100-292 7-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.8 3E-18 6.5E-23 175.3 12.9 142 94-247 10-156 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.7 1.2E-15 2.7E-20 152.0 13.9 160 100-292 7-170 (273)
32 KOG1262 FAD-binding protein DI 99.6 1.6E-15 3.4E-20 152.3 8.0 147 164-315 105-251 (543)
33 PRK13904 murB UDP-N-acetylenol 99.5 6.5E-14 1.4E-18 138.4 10.8 156 98-293 3-160 (257)
34 PF09330 Lact-deh-memb: D-lact 98.3 3.3E-05 7.2E-10 75.9 15.4 219 298-534 1-282 (291)
35 PRK09799 putative oxidoreducta 97.2 0.00059 1.3E-08 68.5 6.2 102 119-225 4-111 (258)
36 TIGR03312 Se_sel_red_FAD proba 96.9 0.0014 3.1E-08 65.7 6.1 101 120-225 4-110 (257)
37 PF00941 FAD_binding_5: FAD bi 96.9 0.0003 6.5E-09 66.1 0.7 103 118-225 3-116 (171)
38 TIGR02963 xanthine_xdhA xanthi 96.6 0.0045 9.7E-08 67.4 7.1 105 116-225 191-304 (467)
39 PRK09971 xanthine dehydrogenas 96.3 0.0072 1.6E-07 61.8 6.0 102 119-225 6-119 (291)
40 PF09265 Cytokin-bind: Cytokin 96.2 0.011 2.3E-07 59.6 6.4 113 419-535 141-279 (281)
41 TIGR03195 4hydrxCoA_B 4-hydrox 96.0 0.0077 1.7E-07 62.2 4.6 102 119-225 6-118 (321)
42 TIGR03199 pucC xanthine dehydr 95.9 0.007 1.5E-07 61.0 3.6 98 123-224 1-109 (264)
43 PF08031 BBE: Berberine and be 95.7 0.0043 9.3E-08 45.2 1.0 30 503-533 14-43 (47)
44 PLN02906 xanthine dehydrogenas 94.2 0.086 1.9E-06 64.5 6.9 105 117-225 228-351 (1319)
45 PF04030 ALO: D-arabinono-1,4- 94.2 0.25 5.4E-06 49.5 9.2 107 419-531 125-252 (259)
46 PLN00192 aldehyde oxidase 94.1 0.13 2.7E-06 63.2 8.1 109 117-225 233-353 (1344)
47 TIGR02969 mam_aldehyde_ox alde 93.7 0.13 2.8E-06 63.1 7.0 104 118-225 237-359 (1330)
48 COG4630 XdhA Xanthine dehydrog 93.3 0.24 5.3E-06 51.2 7.2 129 112-251 198-337 (493)
49 COG1319 CoxM Aerobic-type carb 92.5 0.36 7.8E-06 49.0 7.1 106 117-226 3-119 (284)
50 PLN00107 FAD-dependent oxidore 91.4 1.1 2.4E-05 44.5 8.9 106 420-531 63-195 (257)
51 TIGR01676 GLDHase galactonolac 51.2 82 0.0018 35.2 9.4 27 420-446 381-414 (541)
52 KOG0430 Xanthine dehydrogenase 46.6 34 0.00074 40.9 5.7 105 118-227 215-334 (1257)
53 COG1154 Dxs Deoxyxylulose-5-ph 37.0 36 0.00079 38.0 3.8 84 114-204 438-529 (627)
54 PRK04322 peptidyl-tRNA hydrola 33.4 73 0.0016 27.7 4.5 37 105-143 38-74 (113)
55 COG4981 Enoyl reductase domain 32.9 59 0.0013 35.9 4.5 33 114-146 149-182 (717)
56 PF07317 YcgR: Flagellar regul 27.6 2.4E+02 0.0053 24.0 6.8 67 123-205 4-70 (108)
57 COG1920 Predicted nucleotidylt 26.0 45 0.00098 31.9 2.0 34 119-152 89-128 (210)
58 cd07033 TPP_PYR_DXS_TK_like Py 25.5 90 0.002 28.4 3.9 29 118-146 125-153 (156)
59 cd06568 GH20_SpHex_like A subg 24.9 62 0.0014 33.6 3.1 23 124-146 72-94 (329)
60 KOG3282 Uncharacterized conser 24.2 1.2E+02 0.0026 28.7 4.4 32 112-143 120-151 (190)
61 PF00076 RRM_1: RNA recognitio 24.2 1.6E+02 0.0034 21.8 4.6 47 266-316 13-59 (70)
62 PF14259 RRM_6: RNA recognitio 24.0 2.5E+02 0.0055 21.0 5.8 46 267-316 14-59 (70)
63 cd02742 GH20_hexosaminidase Be 23.9 67 0.0015 32.9 3.0 23 124-146 69-91 (303)
64 PF02601 Exonuc_VII_L: Exonucl 22.4 1.2E+02 0.0025 31.2 4.5 34 117-150 42-87 (319)
65 KOG4730 D-arabinono-1, 4-lacto 22.3 41 0.0009 36.2 1.1 20 512-531 485-504 (518)
66 PF15608 PELOTA_1: PELOTA RNA 22.3 93 0.002 26.5 3.0 32 118-149 58-89 (100)
67 cd06565 GH20_GcnA-like Glycosy 22.1 76 0.0016 32.5 3.0 24 123-146 56-79 (301)
68 COG1519 KdtA 3-deoxy-D-manno-o 21.6 6.5E+02 0.014 27.1 9.8 68 81-149 218-293 (419)
69 PF00728 Glyco_hydro_20: Glyco 21.5 68 0.0015 33.2 2.6 28 124-151 70-99 (351)
70 cd06570 GH20_chitobiase-like_1 21.4 81 0.0018 32.5 3.0 23 124-146 65-87 (311)
71 cd06563 GH20_chitobiase-like T 20.7 84 0.0018 33.0 3.0 22 125-146 84-105 (357)
72 cd06562 GH20_HexA_HexB-like Be 20.5 86 0.0019 32.8 3.1 22 125-146 68-89 (348)
No 1
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=4.8e-102 Score=765.70 Aligned_cols=485 Identities=61% Similarity=1.028 Sum_probs=469.5
Q ss_pred cccccceeccccccc-ccccccCccccCCCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHH
Q 009112 51 FGNASTIRYRCFGSE-ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEV 129 (543)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV 129 (543)
+.++...+++.|||+ |+.++|||.|++++++++..+++++|++.+.++++++..|++||+.+|+|....|++|+|+++|
T Consensus 23 ~~~~~~~~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eV 102 (511)
T KOG1232|consen 23 FNAILTRIRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEV 102 (511)
T ss_pred chhhhceeecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHH
Confidence 455566788889999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCC
Q 009112 130 SQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDL 209 (543)
Q Consensus 130 ~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~ 209 (543)
++|++||+++++.|+|+||+|++.|+++|..+.||+++.+||+|+++|+..++++|+|||.++++..+|+++|+++|.|.
T Consensus 103 S~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDL 182 (511)
T KOG1232|consen 103 SAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDL 182 (511)
T ss_pred HHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEe
Q 009112 210 GAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT 289 (543)
Q Consensus 210 g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl 289 (543)
|+.++|.|||+|+|||||.+..|||+.+.+|+++|+|+|+|+++......+|+++|||+.++|+||||++||||++++-+
T Consensus 183 gAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~ 262 (511)
T KOG1232|consen 183 GAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILA 262 (511)
T ss_pred CCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEEEEecCCChhh
Q 009112 290 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESY 369 (543)
Q Consensus 290 ~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~ 369 (543)
.|.|+..+..++..++++++++++.++++.++++++|+|+||+.++.++.+++.....|+.++ .+||++||+.|++.++
T Consensus 263 ~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~-~pFyiLiETsGSn~dh 341 (511)
T KOG1232|consen 263 PPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDE-HPFYILIETSGSNKDH 341 (511)
T ss_pred cCCCcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCC-CceEEEEEecCCCccc
Confidence 999999999999999999999999999999999999999999999999999987788888776 7899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHHHHhcCceeEEeeecchhhHHHHHHHHHHHHhhc---C
Q 009112 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGET---A 446 (543)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~~~~g~~~~~D~~vp~~~l~~~~~~~~~~~~~~---g 446 (543)
+++++++|++..++.+.+.++++++|+.+..++|+||+.+++++.+.|.+|++|+++|...++++++.+++++... +
T Consensus 342 D~eKl~afl~d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~~ 421 (511)
T KOG1232|consen 342 DEEKLTAFLEDCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAALVG 421 (511)
T ss_pred cHHHHHHHHHHhhhhcccccceecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999885 4
Q ss_pred cEEEeeecCCCceEEEeccCCCChHHHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCC
Q 009112 447 KVIGYGHLGDGNLHLNISAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDP 526 (543)
Q Consensus 447 ~~~~~gH~gdGnlH~~i~~~~~~~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP 526 (543)
++++|||+||||+|+||....++++..+.+++++|||+.+++||||+|||+|.+|++|+.+..+++.+.+|+.||+.|||
T Consensus 422 d~~gyGHlGDgNlHLNia~~efn~~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DP 501 (511)
T KOG1232|consen 422 DIVGYGHLGDGNLHLNIAVREFNKEIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDP 501 (511)
T ss_pred cccccccccCCceeEeeeHHHHhHHHHHhhhhHHHHHHHhcCCceeccccccccccCccccCCCHHHHHHHHHHHhhcCC
Confidence 78899999999999999998888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccc
Q 009112 527 NGILNPYKVL 536 (543)
Q Consensus 527 ~gIlNPGk~~ 536 (543)
+|||||+|.+
T Consensus 502 ngILnPYK~i 511 (511)
T KOG1232|consen 502 NGILNPYKYI 511 (511)
T ss_pred cccCCccccC
Confidence 9999999975
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=6.8e-78 Score=654.70 Aligned_cols=452 Identities=26% Similarity=0.388 Sum_probs=389.7
Q ss_pred ccCCCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhccc--CCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCC
Q 009112 75 FSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKY--RGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (543)
Q Consensus 75 ~~~~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~--~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~ 152 (543)
+..+.++++++|++++|++ |.++++.+..|.+||...+ ...|.+|++|+|++||+++|++|+++++||+|+|||||+
T Consensus 91 ~~~~~~~~~~~L~~~l~~~-v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~ 169 (555)
T PLN02805 91 HKLVPQELIDELKAILQDN-MTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSI 169 (555)
T ss_pred cccchHHHHHHHHHhcCCc-eecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence 3455577889999999854 9999999999999874333 257999999999999999999999999999999999999
Q ss_pred CCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccc
Q 009112 153 VGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVR 232 (543)
Q Consensus 153 ~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~ 232 (543)
.|++++..+|++|||++||+|+++|+++.+|+||||+++.+|+++|.++|+++|++|++ .+||||++++|++|..+.+
T Consensus 170 ~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~--~~TIGG~ia~n~~G~~s~~ 247 (555)
T PLN02805 170 EGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVR 247 (555)
T ss_pred CCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCcc--ccChhhHhhCCCcccccCc
Confidence 99988767899999999999999999999999999999999999999999999999873 5899999999999999999
Q ss_pred cCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHH
Q 009112 233 YGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (543)
Q Consensus 233 yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~ 312 (543)
||.++|+|++++||++||++++++....|+++||||+++++||+|+|||||+++||+.|.|+.....++.|++++++.++
T Consensus 248 yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~a 327 (555)
T PLN02805 248 YGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADV 327 (555)
T ss_pred cccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHH
Confidence 99999999999999999999998777678889999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHhccccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEE
Q 009112 313 LREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVI 392 (543)
Q Consensus 313 ~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (543)
+.+++. .+..|+++|+||+..++.+..+. . ..++ ..+++++|+.|.+++ ..++.+.+.+.+.+.+. .+..+
T Consensus 328 v~~i~~-~g~~psa~ElmD~~~~~~~~~~~-~--~~~p---~~~~Ll~e~~g~~~~-~~~~~~~~~~i~~~~g~-~~~~~ 398 (555)
T PLN02805 328 AIATML-SGIQVSRVELLDEVQIRAINMAN-G--KNLP---EAPTLMFEFIGTEAY-AREQTLIVQKIASKHNG-SDFVF 398 (555)
T ss_pred HHHHHh-CCCCcEEEEEECHHHHHHHHHhc-C--CCCC---cceEEEEEEecCcHH-HHHHHHHHHHHHHhCCC-ceEEE
Confidence 888753 46679999999998887765442 2 1222 246899999997653 34444555544444443 45678
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHhcCc---eeEEeeecchhhHHHHHHHHHHHHhhcC-cEEEeeecCCCceEEEeccCCC
Q 009112 393 AQDINQASSFWRIREGIAEALMKAGA---VYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNISAPRY 468 (543)
Q Consensus 393 ~~~~~~~~~~w~~R~~~~~~~~~~g~---~~~~D~~vp~~~l~~~~~~~~~~~~~~g-~~~~~gH~gdGnlH~~i~~~~~ 468 (543)
+.++++..++|+.|+....+...... .+.+|++||+++++++++.+++.+++++ ....|||+||||+|+++.++..
T Consensus 399 a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH~~i~~~~~ 478 (555)
T PLN02805 399 AEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTIILFDPS 478 (555)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEEEEeccCCC
Confidence 88888999999999987776654332 3678999999999999999999999887 5677999999999999987544
Q ss_pred ChHH---HHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcccCC
Q 009112 469 DDMI---FAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLPH 538 (543)
Q Consensus 469 ~~~~---~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk~~~~ 538 (543)
+++. .+++.+.+++.+.++||++|+|||+|..|++|+..++|++.+++|++||++|||+|||||||+||+
T Consensus 479 ~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 479 QEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 3332 345667789999999999999999999999999999999999999999999999999999999974
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=6.5e-75 Score=628.14 Aligned_cols=451 Identities=26% Similarity=0.404 Sum_probs=391.3
Q ss_pred HHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccC
Q 009112 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (543)
Q Consensus 80 ~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~ 159 (543)
.+++++|++++|.++|+++++.+..|++|+...+...|.+|++|+|++||+++|++|+++++||++||+||++.|+++|.
T Consensus 19 ~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~ 98 (499)
T PRK11230 19 TSLLMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL 98 (499)
T ss_pred HHHHHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC
Confidence 46788899999999999999999999999876778899999999999999999999999999999999999999999887
Q ss_pred CCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCcc
Q 009112 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGN 239 (543)
Q Consensus 160 ~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~ 239 (543)
.+|++|||++||+|+++|+++.+++||||+++.+|+++|+++|+++|++|++...|||||+|++|++|.++.+||.++|+
T Consensus 99 ~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~ 178 (499)
T PRK11230 99 EKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHN 178 (499)
T ss_pred CCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhh
Confidence 78999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHHH
Q 009112 240 VLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK 319 (543)
Q Consensus 240 V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (543)
|++++||++||++++++... +++.||||+++++||+|+|||||++|||+.|.|+.....++.|++.+++.+++.++..
T Consensus 179 v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~- 256 (499)
T PRK11230 179 LLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA- 256 (499)
T ss_pred eeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh-
Confidence 99999999999999987653 3567999999999999999999999999999999888888899999999999888754
Q ss_pred hccccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHH
Q 009112 320 LGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQA 399 (543)
Q Consensus 320 ~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (543)
.+..|.++|++|+..+..+..+. ....|.+ ...++++|+.|..++ +..+++.+.+.+.+.+. .+..++.++++.
T Consensus 257 ~~~~p~~~el~d~~~~~~~~~~~-~~~~p~~---~~~~ll~e~~g~~~~-v~~~~~~l~~~~~~~g~-~~~~~a~~~~~~ 330 (499)
T PRK11230 257 AGIIPGGLEMMDNLSIRAAEDFI-HAGYPVD---AEAILLCELDGVESD-VQEDCERVNDILLKAGA-TDVRLAQDEAER 330 (499)
T ss_pred cCCCcEEEEeeCHHHHHHHHHhc-CCCCCCC---cceEEEEEecCCchH-HHHHHHHHHHHHHhcCC-ceEEEeCCHHHH
Confidence 45678999999998877766554 2223322 346899999988653 44455666666555442 345666788888
Q ss_pred HHHHHHHHHHHHHHHhcC-ceeEEeeecchhhHHHHHHHHHHHHhhcC-cEEEeeecCCCceEEEeccCCCChH---HHH
Q 009112 400 SSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNISAPRYDDM---IFA 474 (543)
Q Consensus 400 ~~~w~~R~~~~~~~~~~g-~~~~~D~~vp~~~l~~~~~~~~~~~~~~g-~~~~~gH~gdGnlH~~i~~~~~~~~---~~~ 474 (543)
..+|..|+...+.+...+ ..+..|++||+++++++++.+++.+++++ ....+||+||||+|+++..+..+++ ...
T Consensus 331 ~~~W~~R~~~~~~~~~~~~~~~~~dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~gH~GdGn~H~~i~~~~~~~~~~~~~~ 410 (499)
T PRK11230 331 VRFWAGRKNAFPAVGRISPDYYCMDGTIPRRELPGVLEGIARLSQQYGLRVANVFHAGDGNMHPLILFDANEPGELERAE 410 (499)
T ss_pred HHHHHHHHhhHHHHHhhCCCeeEEeecCChHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCcceeeecCCCCCHHHHHHHH
Confidence 899999987666655433 34568999999999999999999888876 5677999999999999876543332 224
Q ss_pred HHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcccCC
Q 009112 475 QIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLPH 538 (543)
Q Consensus 475 ~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk~~~~ 538 (543)
.+...+++.+.++||++|+|||+|+.|.+|+..++|++.+++|++||++|||+|||||||+|+.
T Consensus 411 ~~~~~l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~~ 474 (499)
T PRK11230 411 ALGGKILELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIPT 474 (499)
T ss_pred HHHHHHHHHHHHcCCeEeeeccCchhhHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeCC
Confidence 4556788899999999999999999999999999999999999999999999999999999974
No 4
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=6.7e-70 Score=579.40 Aligned_cols=408 Identities=32% Similarity=0.494 Sum_probs=352.7
Q ss_pred EEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHH
Q 009112 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLD 199 (543)
Q Consensus 120 vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~ 199 (543)
|++|+|++||+++|++|+++++||+|+|+|||+.|++++.+++++|||++||+|+++|+++.+++||||+++.+|+++|+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999999999999999999999999999999988877899999999999999999999999999999999999999
Q ss_pred hcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCe
Q 009112 200 DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSL 279 (543)
Q Consensus 200 ~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~l 279 (543)
++|+++|++|++...+||||++++|++|.++.+||.++|+|++++||++||++++++....|+..||||+++++||+|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 99999999999988899999999999999999999999999999999999999999887778899999999999999999
Q ss_pred EEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEE
Q 009112 280 GIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVL 359 (543)
Q Consensus 280 GIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~ll 359 (543)
||||+++||++|.|+......+.|++++++.+++.++.. .+..|+++|++|...+..+..+. .. .++.. ...+++
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~p~a~el~d~~~~~~~~~~~-~~--~~p~~-~~~~l~ 235 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA-AGIIPAGMEFLDNLSIKAVEDIS-GI--GLPKD-AGAILL 235 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh-cCCCcEEEEccCHHHHHHHHHhc-CC--CCCCC-CceEEE
Confidence 999999999999999888888899999999999988754 45679999999998877665542 21 12222 346788
Q ss_pred EEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHHHHhcC-ceeEEeeecchhhHHHHHHHH
Q 009112 360 IETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKM 438 (543)
Q Consensus 360 ie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~~~~g-~~~~~D~~vp~~~l~~~~~~~ 438 (543)
+++.|..++ .+++++.+.+.+.+.+. .+...+.++++..++|+.|+...+.+.... ..+..|+++|+++++++++.+
T Consensus 236 v~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~ 313 (413)
T TIGR00387 236 VEIDGVHEA-VERDEEKIEQICRKNGA-VDVQIAQDEEERALLWAGRRNAFKAASKLSPLYLIEDGTVPRSKLPEALRGI 313 (413)
T ss_pred EEecCCcHH-HHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHHHHHhHHHHHhhCCCcceeEEecCHHHHHHHHHHH
Confidence 999988754 45555666555544443 345666778889999999998776655433 345689999999999999999
Q ss_pred HHHHhhcC-cEEEeeecCCCceEEEeccCCCChHH---HHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHH
Q 009112 439 RQRLGETA-KVIGYGHLGDGNLHLNISAPRYDDMI---FAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTV 514 (543)
Q Consensus 439 ~~~~~~~g-~~~~~gH~gdGnlH~~i~~~~~~~~~---~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~ 514 (543)
++.+.+++ ....+||+|+||+|+++.++..+++. ...+...+++.+.++||++|+|||+|..|++|+.+++++..+
T Consensus 314 ~~~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~~ 393 (413)
T TIGR00387 314 ADIARKYDFTIANFGHAGDGNLHPTILTDPEDKGEMERVEEAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKEL 393 (413)
T ss_pred HHHHHHcCCeEEEEEEecCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHHH
Confidence 99998887 56679999999999988765443332 233456678888999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCCCCc
Q 009112 515 QLMSSIKKLLDPNGILNPYK 534 (543)
Q Consensus 515 ~~m~~iK~~~DP~gIlNPGk 534 (543)
++|++||+.|||+|||||||
T Consensus 394 ~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 394 ETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHHHHcCcCcCCCCcC
Confidence 99999999999999999998
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=8.4e-64 Score=540.71 Aligned_cols=446 Identities=37% Similarity=0.579 Sum_probs=378.9
Q ss_pred HHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEE
Q 009112 86 FKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVII 165 (543)
Q Consensus 86 l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvI 165 (543)
+..+++...+.+++.....|..||+ .+...|.+|+.|+|++||++++++|+++++||+|||+||++.|+++|. ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvvl 79 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVL 79 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEEE
Confidence 5677887778999999999999998 778889999999999999999999999999999999999999999987 79999
Q ss_pred EeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEE
Q 009112 166 NMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEA 245 (543)
Q Consensus 166 dl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~ev 245 (543)
||++||+|+++|+++.+++||||+++.+|+++|+++|+++|++|++.+.|||||+|++|+||.++.+||.++|+|+++++
T Consensus 80 ~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 80 DLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred EchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 99999999899999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHH---HHhcc
Q 009112 246 VLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK---RKLGE 322 (543)
Q Consensus 246 V~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 322 (543)
|++||++++++.+..|+++||||+++++||+|+|||||++++|+.|.|+...+.+..+++.+.+........ .....
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 999999999999988999999999999999999999999999999999988888888888887765433332 12224
Q ss_pred ccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHH
Q 009112 323 ILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSF 402 (543)
Q Consensus 323 ~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (543)
.+.++|++|.. ......+......+.. ...++++++.+............+.+.+.+.+...+..+..+..+...+
T Consensus 240 ~~~~~e~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
T COG0277 240 IPAALEFMDRP-IKAAEAYLGGGALPLE---APARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARL 315 (459)
T ss_pred Cceeeeecchh-HHHHHHhccccCCCCC---CceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHH
Confidence 57889999987 3344443322122222 2267888888776334455556666655554434556777888889999
Q ss_pred HHHHHHHHHHHHhcCc-eeEEeeecchhhHHHHHHHHHHHHhhcC---cEEEeeecCCCceEEEeccCCCC-hH---HHH
Q 009112 403 WRIREGIAEALMKAGA-VYKYDLSLPVEKMYDLVEKMRQRLGETA---KVIGYGHLGDGNLHLNISAPRYD-DM---IFA 474 (543)
Q Consensus 403 w~~R~~~~~~~~~~g~-~~~~D~~vp~~~l~~~~~~~~~~~~~~g---~~~~~gH~gdGnlH~~i~~~~~~-~~---~~~ 474 (543)
|..|+.........+. .+..|+++|.+.+++++..+.+.+.+.+ ....++|.+|||+|+.+..+..+ .+ ...
T Consensus 316 ~~~r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~ 395 (459)
T COG0277 316 WLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHAGDGNLHLNILYDVGDEAEELARAE 395 (459)
T ss_pred HHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHHHhcCCCceeeeecccCCCcceeeeccCCCccHHHHHHHH
Confidence 9999988877766553 5678999999999999999999988874 56789999999999988765432 11 233
Q ss_pred HHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcccCC
Q 009112 475 QIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLPH 538 (543)
Q Consensus 475 ~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk~~~~ 538 (543)
++.+.+.+.+.++||++++|||+|..|.+|+....+ +.+++|+++|+.|||+|||||||+++.
T Consensus 396 ~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 396 ALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 455667888999999999999999999999999988 889999999999999999999999874
No 6
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-49 Score=420.67 Aligned_cols=432 Identities=19% Similarity=0.275 Sum_probs=332.2
Q ss_pred HHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccC
Q 009112 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (543)
Q Consensus 80 ~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~ 159 (543)
.+++++|++++|+++|+++++.+..|+.||. ...+.|.+||+|.|++||+++|++|+++++||+|||||||++|+++|.
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-SGQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccC
Confidence 4678899999999999999999999999985 467889999999999999999999999999999999999999999996
Q ss_pred CC-----cEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCC-CcceecccccCCcCCCCcccc
Q 009112 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (543)
Q Consensus 160 ~~-----gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~-~~~tvGG~va~na~G~~~~~y 233 (543)
.+ +|+|||.+||+|++|| ++.+++|||||++.+|+++|+++|+.++.++|++ ..|||||+|++|+||....+|
T Consensus 82 ~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRg 160 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRG 160 (564)
T ss_pred CCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEc
Confidence 43 7999999999999999 5678999999999999999999999988777554 346899999999999999999
Q ss_pred CCCCccEEEEEEEecCCcE-------EEccCCcc--c---CCCCC----------------------------------c
Q 009112 234 GSLHGNVLGLEAVLANGDV-------IDMLGTLR--K---DNTGY----------------------------------D 267 (543)
Q Consensus 234 G~~~d~V~~~evV~~dG~i-------~~~~~~~~--k---~~~g~----------------------------------d 267 (543)
|.+.++++. ++|+++|++ ++.+.... + ++.|| |
T Consensus 161 ga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaD 239 (564)
T PRK11183 161 PAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNAD 239 (564)
T ss_pred chhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCC
Confidence 999999999 999999999 66555431 2 56788 9
Q ss_pred cchhh--hccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcCC
Q 009112 268 LKHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGV 345 (543)
Q Consensus 268 L~~~~--~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~ 345 (543)
+.++| .||+|+|||| +++|+++|.|+...++++.|++.+++.++.+.+...++..|.++||||+.+++.+..|.+++
T Consensus 240 l~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~ygkd~ 318 (564)
T PRK11183 240 PRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYGKDT 318 (564)
T ss_pred HHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhCCcc
Confidence 99999 9999999999 99999999999999999999999999999999988788999999999999888888765421
Q ss_pred C---------------------------CC---------------------CCCC------CCceEEEEEecCCChhhHH
Q 009112 346 R---------------------------NP---------------------FSSS------MHNFYVLIETTGSEESYDR 371 (543)
Q Consensus 346 ~---------------------------~p---------------------~~~~------~~~~~llie~~g~~~~~~~ 371 (543)
- .| +|.. .+...+++.+.+...++..
T Consensus 319 ~~~i~~~gt~~~p~~f~~k~~~d~~~~~~~~~~~~~~d~~~q~~~~~~p~~lp~r~~~~r~~y~hhl~lk~~~~~~~e~~ 398 (564)
T PRK11183 319 FLMIDKLGTDKLPKLFALKGRVDAFLEKVPFLPPHFTDRVMQALSKLFPSHLPKRMKDYRDKYEHHLLLKMSGDGIEEAR 398 (564)
T ss_pred EEehhhhCchhHHHHHhhHHHHHHHHHhcCCCCCCCcHHHHHHHHhhChhhcCHHHHHHHHHhhhheeeeecCccHHHHH
Confidence 0 00 0000 0233477777776654444
Q ss_pred HHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHHHHh--------cCceeEEeeecchhhHHHHHHHHHHHHh
Q 009112 372 EKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLG 443 (543)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~~~--------~g~~~~~D~~vp~~~l~~~~~~~~~~~~ 443 (543)
+.++.+.... .| ..+.++++|.++..-.|-.+..+.-+ ...+...|++++...- +.++.+-+.+.
T Consensus 399 ~~l~~~f~~~--~g----~~f~c~~~e~~~a~lhrf~~a~aa~ry~~~~~~~~~~i~~ldial~rn~~-~w~e~lp~~~~ 471 (564)
T PRK11183 399 AYLKEYFKSA--EG----DFFECTPEEGKKAFLHRFAAAGAAIRYRAVHRDEVEDILALDIALRRNDR-DWFEHLPPEID 471 (564)
T ss_pred HHHHHHhhhc--CC----CeEeeCHHHHHHHHHHHHHhhhhHHHHHHhhhccccceeeEEeeecCCcc-chHHhCCHHHh
Confidence 4444444221 22 24556666666555444443322111 1235678999986653 22222222221
Q ss_pred hc-CcEEEeeecCCCceEEEeccCCCChHHHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhH
Q 009112 444 ET-AKVIGYGHLGDGNLHLNISAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKK 522 (543)
Q Consensus 444 ~~-g~~~~~gH~gdGnlH~~i~~~~~~~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~ 522 (543)
.. -..+.|||+.--.+|-.+++....+ ..+++..|.+++.+.|+..-+||.+|-+- ..-..|++.=+
T Consensus 472 ~~~~~~~yyghf~chv~hqdyi~kkg~d--~~~~~~~m~~~l~~rga~ypaehnvghly----------~a~~~l~~~y~ 539 (564)
T PRK11183 472 DQLVHKLYYGHFFCHVFHQDYIVKKGVD--VHALKHEMLELLDARGAEYPAEHNVGHLY----------KAKPALKKFYR 539 (564)
T ss_pred hhhhhheeccccceecchhhhhhccCCC--HHHHHHHHHHHHHhcCCcCCcccccCccc----------cCChHHHHHHH
Confidence 11 1235688877656776666543222 23567788899999999999999999652 12345666667
Q ss_pred hcCCCCCCCCCc
Q 009112 523 LLDPNGILNPYK 534 (543)
Q Consensus 523 ~~DP~gIlNPGk 534 (543)
.+||.|-||||-
T Consensus 540 ~~dptn~~npgi 551 (564)
T PRK11183 540 ELDPTNSFNPGI 551 (564)
T ss_pred hcCCccCCCCcc
Confidence 789999999993
No 7
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=2.5e-50 Score=408.29 Aligned_cols=440 Identities=20% Similarity=0.243 Sum_probs=317.5
Q ss_pred HHHHhhCC---CceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcC--CceEEEEcCCCCCCCCcccC
Q 009112 85 YFKELLGE---KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPV 159 (543)
Q Consensus 85 ~l~~~~g~---~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~--~~pv~~~GgGt~~~g~~~~~ 159 (543)
.+..++|. ..+..++...++.++|+...+.-.|.+|+.|+|++||++++|.|+.. ++||++||+||++.|++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~ 108 (505)
T KOG1231|consen 29 SLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT 108 (505)
T ss_pred chhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC
Confidence 35555652 23455666678888888888888999999999999999999999999 89999999999999999887
Q ss_pred CCcEEEEeC---CCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCC--ccccCCCCCCcceecccccCCcCCCCccccC
Q 009112 160 FDEVIINMG---SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 234 (543)
Q Consensus 160 ~~gvvIdl~---~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl--~lp~~~g~~~~~tvGG~va~na~G~~~~~yG 234 (543)
.+|++|.|. .++++-.+..++..|.|+||..|-+|.+++.++|+ .++.||+. .||||++++.+.|...+|||
T Consensus 109 ~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~---ltVGGtlsnagiggqafRyG 185 (505)
T KOG1231|consen 109 RGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP---LTVGGTLSNAGIGGQAFRYG 185 (505)
T ss_pred CCCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc---eeecceeccCccccceeecc
Confidence 889776665 36666567777899999999999999999999999 57777763 78999999999999999999
Q ss_pred CCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCC---cceeEEEE-EeCCHHHHH
Q 009112 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL---SSVNLAFL-ACKDYFSCQ 310 (543)
Q Consensus 235 ~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p---~~~~~~~~-~~~~~~~~~ 310 (543)
...+||+.++||+++|++++|+++ .|++|+.++.||+|+|||||+++++|+|.| +....... .|+..+.+.
T Consensus 186 pqi~NV~~LdVVtgkGeiv~cs~r-----~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~ 260 (505)
T KOG1231|consen 186 PQISNVIELDVVTGKGEIVTCSKR-----ANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAA 260 (505)
T ss_pred chhhceEEEEEEcCCCcEEecccc-----cCceeeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhh
Confidence 999999999999999999999876 788999999999999999999999999999 33333333 456555554
Q ss_pred HHHHHHHHHhccc-cceeeecchhHHHHHHHhhcCCCCC------CCCCCCceEEEEEecCCChhhHHHHHHHHHHHHhh
Q 009112 311 KLLREAKRKLGEI-LSAFEFLDNQSMDLVLTYLEGVRNP------FSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (543)
Q Consensus 311 ~~~~~~~~~~~~~-~~a~e~ld~~~~~~~~~~~~~~~~p------~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~ 383 (543)
....+.. ...+ .+.++..|...++...... ....- ++.. ..-.+..|+.+..+......-..+...+.-
T Consensus 261 ~~~~~gl--~~n~r~s~f~l~D~~~i~~~~~~~-~~~yclev~ky~d~~-e~pti~~e~~~l~~~l~~~~~~~~~~~v~y 336 (505)
T KOG1231|consen 261 IVARNGL--QSNIRVSRFELLDEVQIAAINSDH-STNYCLEVAKYYDLT-EAPTLFQEIGGLSEKLNYAPTFIVEQDVQY 336 (505)
T ss_pred hhhhccc--cccceeeccccCcHHHHHHHHhcC-CeeeeeehhhccCcc-cCchHHHHHhccchhhhccchhhhhhhhHH
Confidence 3332221 1222 3448888877665554321 11100 0000 011233444443322211111111111110
Q ss_pred CCCeee-eEEecCHHHHHHHHHHHHHHHHHHHhcC------ceeEEeeecchhhHHHHHHHHHHHHhhcC-cEEEeeecC
Q 009112 384 GGLISD-GVIAQDINQASSFWRIREGIAEALMKAG------AVYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLG 455 (543)
Q Consensus 384 ~~~~~~-~~~~~~~~~~~~~w~~R~~~~~~~~~~g------~~~~~D~~vp~~~l~~~~~~~~~~~~~~g-~~~~~gH~g 455 (543)
.. ..+ ..++.+......+|+.||....+.-..+ ..+..|+++|.+..+.++..+++.+.... .....+|+|
T Consensus 337 ~~-fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~~~s~g~~liyptnk~~kw~~~~sav~ph~~ 415 (505)
T KOG1231|consen 337 HD-FLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILVPNSSGPVLIYPTNKDLKWSNRLSAVTPHAG 415 (505)
T ss_pred HH-hhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhccceeeccCCCceEEeccccCcchhhhhccccccCC
Confidence 01 111 2344455566789998887332221112 22457999999999888887776544432 345679999
Q ss_pred CCceEEEeccCCCChHHHHH---HHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCC
Q 009112 456 DGNLHLNISAPRYDDMIFAQ---IEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNP 532 (543)
Q Consensus 456 dGnlH~~i~~~~~~~~~~~~---~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNP 532 (543)
||++|+.++.....++..++ +.+.+.+.+.+. |...+|||+|..|++|+..++|+.-.+.|+ +|.+|||+.||||
T Consensus 416 e~vFy~v~~l~s~~~~~~e~~~~~n~riv~fc~~a-g~~~keyl~~~~~~e~w~~hfG~~w~~f~~-~K~~~DPk~Il~P 493 (505)
T KOG1231|consen 416 EGVFYLVILLRSSGKEEHEELEQLNDRIVKFCLAA-GTCTKEYLPHYGKREYWVEHFGEKWVDFMR-IKKAYDPKRILNP 493 (505)
T ss_pred CceEEEEEEecCCCchhHHHHHHHHHHHHHHHHHc-CcChhhhcCCcccHHHHHHHhChhHHHHHH-HHhhcCHHHhcCC
Confidence 99999988876544444434 445667777778 999999999999999999999987777777 9999999999999
Q ss_pred CcccCCC
Q 009112 533 YKVLPHS 539 (543)
Q Consensus 533 Gk~~~~~ 539 (543)
|+.|+..
T Consensus 494 Gq~Ifq~ 500 (505)
T KOG1231|consen 494 GQRIFQK 500 (505)
T ss_pred ccccccC
Confidence 9999743
No 8
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=373.64 Aligned_cols=346 Identities=19% Similarity=0.251 Sum_probs=251.0
Q ss_pred CHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCc
Q 009112 125 TTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI 204 (543)
Q Consensus 125 s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~ 204 (543)
..+||+++|++|+++++||+|+|+||+..++. +. ++++|||++||+|+++|+++.+|+||||+++.+|+++|+++|+.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~ 80 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQM 80 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 47999999999999999999999998544333 32 46899999999999999999999999999999999999999999
Q ss_pred cccCCCCCC-cceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEE
Q 009112 205 MPLDLGAKG-SCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVT 283 (543)
Q Consensus 205 lp~~~g~~~-~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt 283 (543)
+|++|+..+ .+||||++++|++|.++.+||.++|+|+++++|++||++++++.+..|+.+||||+++++||+|+|||||
T Consensus 81 lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVit 160 (352)
T PRK11282 81 LPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLL 160 (352)
T ss_pred eCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhhe
Confidence 998876544 4899999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEEEEec
Q 009112 284 KVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETT 363 (543)
Q Consensus 284 ~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~ 363 (543)
+++||++|.|+......+.++ .+++.+++.++..+ ...+++.++ . + . .+++++.
T Consensus 161 evtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~------------~-------~---~--~l~~rl~ 214 (352)
T PRK11282 161 EVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWGGQ-PLPISASCW------------D-------G---G--TLYLRLS 214 (352)
T ss_pred EEEEEEEecCceEEEEEEecC-HHHHHHHHHHHhcC-CCCCchhhh------------c-------C---C--eeEEEEe
Confidence 999999999987666555554 45666666555321 111111111 0 1 1 2555666
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHH-HHHHHHHHHHhcCceeEEeeecchhhHHHHHHHHHHHH
Q 009112 364 GSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWR-IREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRL 442 (543)
Q Consensus 364 g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~R~~~~~~~~~~g~~~~~D~~vp~~~l~~~~~~~~~~~ 442 (543)
|.... ++++.+.+ .. .... .++. .+|. +|+....... .+ .....+++|+++.+.++..
T Consensus 215 g~~~~-v~~~~~~~----~~-------~~~~-~~~~-~~W~~~r~~~~~~~~-~~-~~~~ri~~~p~~~~~~~~~----- 273 (352)
T PRK11282 215 GAEGA-VKAARERL----GG-------EELD-DAEA-AFWQQLREQTLPFFD-DG-RPLWRLSLPSTAPPLDLPG----- 273 (352)
T ss_pred CcHHH-HHHHHHHh----cc-------cccC-chhh-hHHHHHHhcccCcCC-CC-CeEEEEEcCCCCccccccc-----
Confidence 66542 33333222 11 1111 2233 7898 4544312111 12 2235689999888776331
Q ss_pred hhcCcEEEeeecCCCceEEEeccCCCChHHHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhH
Q 009112 443 GETAKVIGYGHLGDGNLHLNISAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKK 522 (543)
Q Consensus 443 ~~~g~~~~~gH~gdGnlH~~i~~~~~~~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~ 522 (543)
.. +-+.+.|...+. . + + ....+++.+.+.||..+-.++....+..|-. +++...++|++||+
T Consensus 274 ----~~--~~~~~gg~~w~~----~-~-~----~~~~~r~~~~~~gG~~tl~~a~~~~~~~~~~--~~~~~~~l~~~lK~ 335 (352)
T PRK11282 274 ----EQ--LIDWGGAQRWLK----S-D-A----DAAAIRAAAAAAGGHATLFRAGDRAGPVFHP--LPAPLLRIHRRLKQ 335 (352)
T ss_pred ----ce--EEEcccceEEec----C-c-c----cHHHHHHHHHhcCCEEEEEECCcccccCCCC--CCHHHHHHHHHHHH
Confidence 11 123333332221 1 1 1 1135788899999999988776554333322 45556899999999
Q ss_pred hcCCCCCCCCCcccC
Q 009112 523 LLDPNGILNPYKVLP 537 (543)
Q Consensus 523 ~~DP~gIlNPGk~~~ 537 (543)
+|||++|||||+++.
T Consensus 336 ~fDP~~ilnpgr~~~ 350 (352)
T PRK11282 336 AFDPAGIFNPGRLYA 350 (352)
T ss_pred hcCcccCCCCCcCCC
Confidence 999999999999875
No 9
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=1.6e-43 Score=350.77 Aligned_cols=453 Identities=20% Similarity=0.312 Sum_probs=321.6
Q ss_pred ccccccCccccCCCHHHHHHHHHhhCCCceecCHHHHH----H-------hhhhhhcccCCCccEEEecCCHHHHHHHHH
Q 009112 66 ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLL----A-------ANEDWMRKYRGSSKLLLQPRTTNEVSQILK 134 (543)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~v~~~~~~l~----~-------~~~d~~~~~~~~p~~vv~P~s~~dV~~il~ 134 (543)
++++.+|..=.-.+.+++..|++- ++..+.+... . .-.-|-.++...|+.|+-|++.+||.++++
T Consensus 103 ~s~~p~d~P~~VeNedflh~Lket----~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~ 178 (613)
T KOG1233|consen 103 LSDVPIDAPRPVENEDFLHFLKET----KISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVE 178 (613)
T ss_pred cccCcccCCCCccchHHHHHHHhc----cCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHH
Confidence 666666665445567777777732 2332222211 1 111244677888999999999999999999
Q ss_pred HhhcCCceEEEEcCCCCCCCCc-ccCCC---cEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCC
Q 009112 135 YCNSRLLAVVPQGGNTGLVGGS-VPVFD---EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLG 210 (543)
Q Consensus 135 ~a~~~~~pv~~~GgGt~~~g~~-~~~~~---gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g 210 (543)
.|.++++.++|.||||+++++. +|... -+.+|++.||+|+++|.++.++++|||++..+|.+.|++.|++..+.|.
T Consensus 179 lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPD 258 (613)
T KOG1233|consen 179 LAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPD 258 (613)
T ss_pred HHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCC
Confidence 9999999999999999998764 34322 2568889999999999999999999999999999999999999999999
Q ss_pred CCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEec
Q 009112 211 AKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTP 290 (543)
Q Consensus 211 ~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~ 290 (543)
|...+|+||||++.++|+.-.+||.+.|.|+.+.+|+|.|.+.+. -..++-++|||+.+.+.||||||||||+++++++
T Consensus 259 S~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~-Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKir 337 (613)
T KOG1233|consen 259 SIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQ-CQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIR 337 (613)
T ss_pred ceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhh-hcCCcccCCCCcceEEeccCcceeEEEEEEEEEe
Confidence 999999999999999999999999999999999999999987542 2233557899999999999999999999999999
Q ss_pred cCCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhc-----------CCCC----C---CC-C
Q 009112 291 PKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLE-----------GVRN----P---FS-S 351 (543)
Q Consensus 291 p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~-----------~~~~----p---~~-~ 351 (543)
|.|+......+.|+++++...+++++..+- -.|+++.+||+....+-....+ .... . ++ .
T Consensus 338 PiPe~~ryGS~aFPNFEqGV~f~REvA~qR-CqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~n 416 (613)
T KOG1233|consen 338 PIPEVKRYGSFAFPNFEQGVNFFREVAIQR-CQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVN 416 (613)
T ss_pred echhhhhcCccccCcHHHHHHHHHHHHHHh-cCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHh
Confidence 999988888889999999999999875432 3578899999764322111000 0000 0 00 0
Q ss_pred CCCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeee-------eEEecCHHHHHHHHHHHHHHHHHHHhcCc-eeEEe
Q 009112 352 SMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISD-------GVIAQDINQASSFWRIREGIAEALMKAGA-VYKYD 423 (543)
Q Consensus 352 ~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~w~~R~~~~~~~~~~g~-~~~~D 423 (543)
+.-.+.+++| |..++ +++..+.+.+.+.+.+++.. +...... .+ -+|.-.. ..+- .-.++
T Consensus 417 qicaATllfE--Gdre~-V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfv--IA---YiRDlgl----~~gvlgESFE 484 (613)
T KOG1233|consen 417 QICAATLLFE--GDREE-VDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFV--IA---YIRDLGL----NHGVLGESFE 484 (613)
T ss_pred hhhhhhheec--ccHHH-HHHHHHHHHHHHHHhCCccccccccccceEEEEe--HH---HHHhhcc----cccchhhccc
Confidence 0011224444 44333 22222333333322221111 0000000 00 0122100 0010 12478
Q ss_pred eecchhhHHHHHHHHHHHHhhc----C-c--EEEeee---c-CCC-ceEEEeccCCC---Ch-HHHHHHHHHHHHHHHhc
Q 009112 424 LSLPVEKMYDLVEKMRQRLGET----A-K--VIGYGH---L-GDG-NLHLNISAPRY---DD-MIFAQIEPYVYEWTSEH 487 (543)
Q Consensus 424 ~~vp~~~l~~~~~~~~~~~~~~----g-~--~~~~gH---~-gdG-nlH~~i~~~~~---~~-~~~~~~~~~~~~~~~~~ 487 (543)
.++||++...+.+.+.+++.+. | + .+.-+. . ..| +++|.+.++.. ++ +.+++++...++.+...
T Consensus 485 TSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~s~CRVTQtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdEIlac 564 (613)
T KOG1233|consen 485 TSVPWDRVLSLCRNVKERMKRECKAQGVTHPVLSNCRVTQTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDEILAC 564 (613)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeEEEEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHHHHhc
Confidence 9999999999988877766543 2 1 111011 0 123 56665554332 22 56788888899999999
Q ss_pred CCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCccc
Q 009112 488 RGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVL 536 (543)
Q Consensus 488 gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk~~ 536 (543)
||++|||||+|+.+++|+....++..+.+++++|+.+||+|||.-++++
T Consensus 565 GGSlSHHHGVGKiRkqW~~~~~~~vG~~llka~K~~lDP~NIFa~~NLl 613 (613)
T KOG1233|consen 565 GGSLSHHHGVGKIRKQWMLTTNGAVGIALLKAIKSELDPANIFASANLL 613 (613)
T ss_pred CCcccccccchHHHHHHHHhhhhhHhHHHHHHHHHhcChhhhccccccC
Confidence 9999999999999999999999999999999999999999999877654
No 10
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=3.4e-42 Score=369.93 Aligned_cols=426 Identities=15% Similarity=0.174 Sum_probs=297.2
Q ss_pred CceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhh--cCCceEEEEcCCCCCCCCcccCCCcEEEEeCCC
Q 009112 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCN--SRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSM 170 (543)
Q Consensus 93 ~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~--~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~l 170 (543)
..+.+|+..+..|++||...+...|.+|++|+|++||+++|++|+ +++++|++||+||++.|++.+ .+|++|||++|
T Consensus 41 ~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~L 119 (525)
T PLN02441 41 GHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSL 119 (525)
T ss_pred ceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCC
Confidence 458899999999999999989999999999999999999999997 679999999999999988876 57999999999
Q ss_pred CC------eEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEE
Q 009112 171 NN------IITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (543)
Q Consensus 171 n~------i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~e 244 (543)
|+ ++++|.+..+|+|+||++|.++.+++.++|+. |..++....+||||++++++.|..+++||.+.|+|++++
T Consensus 120 n~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~le 198 (525)
T PLN02441 120 RGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELD 198 (525)
T ss_pred CCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEE
Confidence 99 67899999999999999999999999999987 446666677899999999888888999999999999999
Q ss_pred EEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHHHhcccc
Q 009112 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEIL 324 (543)
Q Consensus 245 vV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (543)
||+++|+++++++. .++|||++++||+|+|||||++++|++|.|+......+.+++++++.+.+.++.. ...+
T Consensus 199 VVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~--~~~~ 271 (525)
T PLN02441 199 VVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS--RPPE 271 (525)
T ss_pred EEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHh--cCCC
Confidence 99999999999864 4679999999999999999999999999998777777888999999988877754 1122
Q ss_pred ceeeecchhHHHH----HH----HhhcCCC-C---CCCCCCCceEEEEEe----cCCChhhHHHHHHHHHHHHhhCCCee
Q 009112 325 SAFEFLDNQSMDL----VL----TYLEGVR-N---PFSSSMHNFYVLIET----TGSEESYDREKLEAFLLSSMEGGLIS 388 (543)
Q Consensus 325 ~a~e~ld~~~~~~----~~----~~~~~~~-~---p~~~~~~~~~llie~----~g~~~~~~~~~l~~~~~~~~~~~~~~ 388 (543)
.++|+++...+-. +. ..+.... . .+... ....-.+|+ +..+....++..+.++..+.-...
T Consensus 272 ~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~~-- 348 (525)
T PLN02441 272 NSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSD-GGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPG-- 348 (525)
T ss_pred CCcceEeEEEEeCCCCceeeeecccCCccccchhhccccC-CceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCCC--
Confidence 3455554321100 00 0110000 0 01111 122222333 333333344555666665532111
Q ss_pred eeEEecCHHHHHHHHHHHHHHHHHHHhcC----ceeEEeeecchhhHHHHHHHHHHHHhhc---CcEEEee----e----
Q 009112 389 DGVIAQDINQASSFWRIREGIAEALMKAG----AVYKYDLSLPVEKMYDLVEKMRQRLGET---AKVIGYG----H---- 453 (543)
Q Consensus 389 ~~~~~~~~~~~~~~w~~R~~~~~~~~~~g----~~~~~D~~vp~~~l~~~~~~~~~~~~~~---g~~~~~g----H---- 453 (543)
..+..|.. +..+-.--+.....++..| +..+.++.||-+++.+|.+.+.+.+-.. |.++.|- .
T Consensus 349 -~~~~~d~~-y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~~~G~~liyP~~~~~~~~~ 426 (525)
T PLN02441 349 -LLFTTDVS-YVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLDGTNGPILVYPLNRSKWDNR 426 (525)
T ss_pred -CceecccC-HHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhcccccCCCeEEEEecccccCCCC
Confidence 11223322 2222221111222334444 3457899999999999998887766544 3344431 0
Q ss_pred ----cCCCceEEE--eccCCC--ChH--HHHHHHHHHHHHHHhcCC--eEEeeccCCchhhhhhhccCCHHHHHHHHHHh
Q 009112 454 ----LGDGNLHLN--ISAPRY--DDM--IFAQIEPYVYEWTSEHRG--SISAEHGLGLMKANKIFYSKSPKTVQLMSSIK 521 (543)
Q Consensus 454 ----~gdGnlH~~--i~~~~~--~~~--~~~~~~~~~~~~~~~~gG--sis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK 521 (543)
+-+..+-+. ++.... ... .+.+-.+.+.+.+.+.|+ .-+-.|- ....+| ...|| ..++.+.+.|
T Consensus 427 ~s~~~P~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~~--~~~~~W-~~HfG-~~w~~f~~~K 502 (525)
T PLN02441 427 TSAVIPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQYLPHY--TTQEEW-KRHFG-PKWETFVRRK 502 (525)
T ss_pred CccccCCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEcCCCC--CCHHHH-HHHhc-chHHHHHHHH
Confidence 112322222 221111 111 122223457777888888 4443333 234455 55678 5899999999
Q ss_pred HhcCCCCCCCCCccc
Q 009112 522 KLLDPNGILNPYKVL 536 (543)
Q Consensus 522 ~~~DP~gIlNPGk~~ 536 (543)
+.|||++||.||.-|
T Consensus 503 ~~yDP~~iL~pgq~i 517 (525)
T PLN02441 503 AKFDPLAILSPGQRI 517 (525)
T ss_pred hhCCchhhcCCCCcc
Confidence 999999999999654
No 11
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=3.6e-35 Score=312.67 Aligned_cols=380 Identities=16% Similarity=0.190 Sum_probs=248.6
Q ss_pred hhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEe
Q 009112 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (543)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~ 186 (543)
++|+..+...|.+|++|+|++||+++|+.|++ ||+++|+||++.+.+. .+|++|||++||+|+++|+++++|+||
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEc
Confidence 47887788899999999999999999999974 7999999999977554 568999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCC
Q 009112 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (543)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~ 266 (543)
||+++.+|.++|.++|+.+|..++. +.+||||+|+++++|. +.+||.++|+|+++++|++||+++++++. .++
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~~~~-~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~ 149 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQGDI-DPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQ 149 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccCCCC-CCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCH
Confidence 9999999999999999999876654 4579999999999997 46899999999999999999999999865 467
Q ss_pred ccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHH-HHHhhcCC
Q 009112 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDL-VLTYLEGV 345 (543)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~-~~~~~~~~ 345 (543)
||+++++||+|+|||||++|||+.|.+...... ...+++++.+.+.++.... ..+|++--..... ........
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~ 223 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVDGH----RHFEFYVFPFAGKALTITMDRS 223 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHhcC----CeEEEEEecCCCeEEEEECCcC
Confidence 999999999999999999999999998655443 2356777777776664321 2244421100000 00000000
Q ss_pred CCCCCCCCCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHH----HHHHHHHHH-----hc
Q 009112 346 RNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRI----REGIAEALM-----KA 416 (543)
Q Consensus 346 ~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~----R~~~~~~~~-----~~ 416 (543)
..+ +.. ... ....... ..++.+.......... .. .....+.. .+.+..... ..
T Consensus 224 ~~~-~~~-~~~-----------~~~~~~~-~~~~~l~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 285 (419)
T TIGR01679 224 DEQ-PKP-RQR-----------DVDENFL-GGLRLLRQTLRRFPSL---RP-RLNRLMTNMMSSETVVDRAYKVFATQRK 285 (419)
T ss_pred CCc-ccc-ccc-----------chhhhHH-HHHHHHHHhcccCchh---HH-HHHHHHHhhcCCceeeccceEEeccccc
Confidence 000 000 000 0000000 1111110000000000 00 00000000 000000000 01
Q ss_pred CceeEEeeecchhhHHHHHHHHHHHHhhcCc-----E-EEeee-----c-----CCC-ceEEEeccCCCChHHHHHHHHH
Q 009112 417 GAVYKYDLSLPVEKMYDLVEKMRQRLGETAK-----V-IGYGH-----L-----GDG-NLHLNISAPRYDDMIFAQIEPY 479 (543)
Q Consensus 417 g~~~~~D~~vp~~~l~~~~~~~~~~~~~~g~-----~-~~~gH-----~-----gdG-nlH~~i~~~~~~~~~~~~~~~~ 479 (543)
......++++|.++..+.++++++.+++.+. + .-|+- + .++ .+.+.... . .....+...
T Consensus 286 ~~f~q~e~~iP~~~~~~al~~i~~~i~~~~~~~~~pve~R~~~ad~~~LS~~~~r~~~~ia~~~~~-~---~~~~~~~~~ 361 (419)
T TIGR01679 286 VRFNEMEYHLPRENGRKALQEVIDLVERRSPPVMFPIEVRFSAPDDSWLSPFYGRPTCSIAVHQYA-G---MDFESYFRA 361 (419)
T ss_pred ceeeEEEEecchhHHHHHHHHHHHHHHhcCCCccceEEEEEecCCCcccCCCCCCCcEEEEEEEcC-C---CCHHHHHHH
Confidence 2245679999999999999999998888651 1 11221 1 133 22232211 1 112345556
Q ss_pred HHHHHHhcCCeEE--eeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCC
Q 009112 480 VYEWTSEHRGSIS--AEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILN 531 (543)
Q Consensus 480 ~~~~~~~~gGsis--~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlN 531 (543)
+.+++.++||... --|. +.++-+...|. .++.+.++|+.+||+|+|.
T Consensus 362 ~e~i~~~~gGRpHwgK~~~---l~~~~l~~~YP--~~~~F~~~r~~~DP~g~F~ 410 (419)
T TIGR01679 362 VEPIFRRYAGRPHWGKRHY---LTAATLRERYP--RWDDFAAVRDDLDPDRRFL 410 (419)
T ss_pred HHHHHHHcCCCCCchhccC---CCHHHHHHHCc--CHHHHHHHHHHhCCCCccC
Confidence 7888999999754 1121 23445566664 6899999999999999974
No 12
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=4.2e-34 Score=305.04 Aligned_cols=200 Identities=25% Similarity=0.381 Sum_probs=179.4
Q ss_pred hhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEe
Q 009112 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (543)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~ 186 (543)
++|+..+...|.+|+.|+|++||+++|++|+++++||+++|+||++++..+ .+|++|||++||+|+++|+++.+|+||
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 478888889999999999999999999999999999999999999987654 568999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCC
Q 009112 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (543)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~ 266 (543)
||+++.+|.++|.++|+++|. +++.+.+||||+++++++|. +.+||.++|+|+++++|++||++++++++ .++
T Consensus 83 aG~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~ 155 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNA 155 (438)
T ss_pred CCCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CCh
Confidence 999999999999999999885 45566789999999999996 68999999999999999999999999865 457
Q ss_pred ccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHH
Q 009112 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (543)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (543)
||+++.+|++|+|||||++|||+.|.+..... ....+++++++.+.+..
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHW 204 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHh
Confidence 99999999999999999999999998865544 34577888888776654
No 13
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=3.3e-33 Score=304.08 Aligned_cols=206 Identities=16% Similarity=0.180 Sum_probs=177.9
Q ss_pred HhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEc-CCCCCCCCcccC--CCcEEEEeCCCCCeEEeeCCC
Q 009112 104 AANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG-GNTGLVGGSVPV--FDEVIINMGSMNNIITFDKGS 180 (543)
Q Consensus 104 ~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~G-gGt~~~g~~~~~--~~gvvIdl~~ln~i~~id~~~ 180 (543)
.+.++|+..+...|.+|++|+|++||+++|++|+++++||+++| +||++.+.+.+. ++|++|||++||+|+++|.++
T Consensus 19 ~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~ 98 (557)
T TIGR01677 19 NAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATA 98 (557)
T ss_pred cchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCC
Confidence 35679999999999999999999999999999999999999995 589887665543 246999999999988999999
Q ss_pred cEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCcc-ccCCCCccEEEEEEEecCC------cEE
Q 009112 181 GVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLV-RYGSLHGNVLGLEAVLANG------DVI 253 (543)
Q Consensus 181 ~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~-~yG~~~d~V~~~evV~~dG------~i~ 253 (543)
.+|+||||+++.+|.+.|.++|+.+|..|.. ..+||||++++|++|.... +||.++|+|+++++|++|| +++
T Consensus 99 ~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~-~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~ 177 (557)
T TIGR01677 99 MTVTVESGMSLRELIVEAEKAGLALPYAPYW-WGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVR 177 (557)
T ss_pred CEEEECCCCcHHHHHHHHHHcCCEeccCCCC-CCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEE
Confidence 9999999999999999999999999976654 4579999999999998664 7889999999999999999 788
Q ss_pred EccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHH
Q 009112 254 DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (543)
Q Consensus 254 ~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (543)
+++.. .++||+++++||+|+|||||++|||+.|.+... ..+.+...+.+.+.+.++.
T Consensus 178 ~~s~~-----~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~--~~~~~~~~~~l~~~~~~~~ 234 (557)
T TIGR01677 178 ILSEG-----DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS--VTYTMRDDSDFEDQFVTFG 234 (557)
T ss_pred EeCCC-----CCHHHHHhhccCCCccEeeeEEEEEEEccccce--EEEEcCCHHHHHHHHHHhh
Confidence 87654 456999999999999999999999999998732 2345677777777666553
No 14
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.9e-33 Score=299.64 Aligned_cols=201 Identities=18% Similarity=0.312 Sum_probs=181.1
Q ss_pred hhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEe
Q 009112 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (543)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~ 186 (543)
++|+..+...|..+++|+|++||+++|+.|++++.+|+++|+|||+++.+.+ ++.+|||++||+|+++|+++.+|+||
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 5899989999999999999999999999999999999999999999987764 45689999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCC
Q 009112 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (543)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~ 266 (543)
||+++.+|.+.|.++|+.+| .+++...+||||+|++|+||.+ .+||.++|+|+++++|+++|++++++.. .++
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~p 202 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDP 202 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCC-----CCH
Confidence 99999999999999999997 4667778999999999999985 5899999999999999999999998764 356
Q ss_pred ccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHH
Q 009112 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (543)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (543)
||+++++||+|+|||||++|||+.|.+......+. .+++++++.+.++..
T Consensus 203 dLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~--~~~~e~l~~~~~~~~ 252 (541)
T TIGR01676 203 ELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI--SNMKDIKKNHKKFLA 252 (541)
T ss_pred HHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe--cCHHHHHHHHHHHHh
Confidence 99999999999999999999999999976554432 678888888877643
No 15
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=100.00 E-value=4e-33 Score=275.73 Aligned_cols=238 Identities=32% Similarity=0.423 Sum_probs=186.6
Q ss_pred CCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEEEEecCCChhhHH
Q 009112 292 KLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDR 371 (543)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~ 371 (543)
+|+.....++.|++++++.+++.+++.. +..|+++|++|..+++.+..+... +.+.. ..+++++++.|..++.+.
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~-g~~p~a~el~d~~~~~~~~~~~~~---~~~~~-~~~~llv~~~g~~~~~~~ 75 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS-GIIPSAIELLDSAALKLALEHWGE---PLPPE-GGAVLLVEFEGSDEEAVE 75 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH-CSSCCECCCCHHHHHHHHHHSEEE---TSSTT-TSEEEEEECCCHHHCCHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc-CCCceEEeeeCHHHHHHHHhhcCC---CccCC-cccEEEEEECCCcHHHHH
Confidence 4778888899999999999999888765 778999999999999888776422 22222 567899999998866566
Q ss_pred HHHH-HHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHHH-----HhcCceeEEeeecchhhHHHHHHHHHHHHhhc
Q 009112 372 EKLE-AFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEAL-----MKAGAVYKYDLSLPVEKMYDLVEKMRQRLGET 445 (543)
Q Consensus 372 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~-----~~~g~~~~~D~~vp~~~l~~~~~~~~~~~~~~ 445 (543)
++++ .+.+.+...+ ..+..++.++++..++|+.|+.+.+.+ ......+..|+++|+++++++++.+++.+++.
T Consensus 76 ~~~~~~i~~~~~~~~-~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~ 154 (248)
T PF02913_consen 76 EQLEAEIEEICKKYG-GEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREY 154 (248)
T ss_dssp HHHHHHHHHHHCTCT-CCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcC-CceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhc
Confidence 6555 4444444333 344577788888889999999887622 22223568999999999999999999999998
Q ss_pred C-cEEEeeecCCCceEEEeccCCCChHHHHHH---HHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHh
Q 009112 446 A-KVIGYGHLGDGNLHLNISAPRYDDMIFAQI---EPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIK 521 (543)
Q Consensus 446 g-~~~~~gH~gdGnlH~~i~~~~~~~~~~~~~---~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK 521 (543)
+ ....|||+||||+|+++.++..+++..+.+ ...+++.+.++||++|+|||+|..|.+|+..+++++.+++|++||
T Consensus 155 ~~~~~~~gH~~~g~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK 234 (248)
T PF02913_consen 155 GLEVCHFGHAGDGNLHLYILFDPRDPEEPERAEALWDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPAALRLMRAIK 234 (248)
T ss_dssp TEEEEEEEEEEECEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHHHHHHHHHH
T ss_pred cccccceEEccCCeEEEEeecccchHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhHHHHHHhcchHHHHHHHHhh
Confidence 7 567799999999999998765544444343 445677799999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCcc
Q 009112 522 KLLDPNGILNPYKV 535 (543)
Q Consensus 522 ~~~DP~gIlNPGk~ 535 (543)
+.|||+|||||||+
T Consensus 235 ~~~DP~~ilNPGki 248 (248)
T PF02913_consen 235 QAFDPNGILNPGKI 248 (248)
T ss_dssp HHH-TTS-BSTTG-
T ss_pred hccCCccCCCCCCC
Confidence 99999999999996
No 16
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=1.2e-30 Score=282.58 Aligned_cols=202 Identities=20% Similarity=0.295 Sum_probs=176.5
Q ss_pred hhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEE
Q 009112 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVC 185 (543)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v 185 (543)
.++|+......|.+++.|+|++||+++|++|+++++||.++|+||+..+... .++.+|||++||+|+++|++..+|+|
T Consensus 86 ~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~--td~glIdL~~l~~Il~vD~e~~~VtV 163 (573)
T PLN02465 86 VSNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAF--SREGMVNLALMDKVLEVDKEKKRVTV 163 (573)
T ss_pred ccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeee--CCCEEEECcCCCCcEEEeCCCCEEEE
Confidence 4589988999999999999999999999999999999999999999877665 34567999999999999999999999
Q ss_pred eCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCC
Q 009112 186 EAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTG 265 (543)
Q Consensus 186 ~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g 265 (543)
+||+++.+|.+.|.++|++++..+ +....||||+|+++++|.+ .++|.++|+|+++++|+++|++++++.+ ..
T Consensus 164 ~AG~~l~~L~~~L~~~GLal~n~g-~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~ 236 (573)
T PLN02465 164 QAGARVQQVVEALRPHGLTLQNYA-SIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKE-----DD 236 (573)
T ss_pred ccCCCHHHHHHHHHHcCCEeccCC-CCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCC-----CC
Confidence 999999999999999999988644 4456799999999999974 4799999999999999999999998764 34
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (543)
+||+++.+++.|+|||||++|||+.|.+......+. .+++++.+.+.++..
T Consensus 237 pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~--~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 237 PELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFV--SNRKEIKKNHKKWLS 287 (573)
T ss_pred HHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEE--ecHHHHHHHHHHHHH
Confidence 799999999999999999999999999975544332 457777777766643
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=2.6e-28 Score=221.43 Aligned_cols=139 Identities=29% Similarity=0.524 Sum_probs=130.7
Q ss_pred ccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHH
Q 009112 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (543)
Q Consensus 117 p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~ 196 (543)
|.+|++|+|++||++++++|+++++|+.++|+||++.+.+. ..++++|||++||+|+++|+++.+++|+||++|.+|++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999997665 36799999999999889999999999999999999999
Q ss_pred HHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEcc
Q 009112 197 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 256 (543)
Q Consensus 197 ~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~ 256 (543)
+|.++|+.+|+.+++...+|+||++++|++|..+.+||.++|+|+++++|++||++++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999988888888899999999999999999999999999999999999999864
No 18
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=1.6e-25 Score=228.30 Aligned_cols=173 Identities=21% Similarity=0.337 Sum_probs=148.8
Q ss_pred HHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCC-CCCeEEee
Q 009112 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFD 177 (543)
Q Consensus 99 ~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~-ln~i~~id 177 (543)
..+|+.|+ +.++++.|++++.|+|++||++++++|+++++|++++|+|||+.....+ .+|++||+++ |++| ++
T Consensus 16 ~~~l~~~~---t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i-~~- 89 (298)
T PRK13905 16 NEPLARYT---SFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI-EV- 89 (298)
T ss_pred CCCccccc---eeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE-Ee-
Confidence 35688887 6789999999999999999999999999999999999999998654322 2489999998 9987 44
Q ss_pred CCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccC-CCCccEEEEEEEecCCcEEEc
Q 009112 178 KGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDM 255 (543)
Q Consensus 178 ~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG-~~~d~V~~~evV~~dG~i~~~ 255 (543)
++.+++|+||++|.+|.++|.++|+. +...++.++ ||||++++|+|+ || .++|+|.++++|++||+++++
T Consensus 90 -~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG--TVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~~~~~ 161 (298)
T PRK13905 90 -EGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG--TVGGAVFMNAGA-----YGGETADVLESVEVLDRDGEIKTL 161 (298)
T ss_pred -cCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc--chhHHHHHcCCc-----CceEhheeEEEEEEEeCCCCEEEE
Confidence 45689999999999999999999994 555566665 699999999988 87 699999999999999999997
Q ss_pred cCCcccCCCCCccchhhhccCCC--eEEEEEEEEEeccCC
Q 009112 256 LGTLRKDNTGYDLKHLFIGSEGS--LGIVTKVSIHTPPKL 293 (543)
Q Consensus 256 ~~~~~k~~~g~dL~~~~~Gs~G~--lGIIt~v~lrl~p~p 293 (543)
+.+ |+++.++++.+. +||||+++||+.|..
T Consensus 162 ~~~--------e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 162 SNE--------ELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EHH--------HcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 643 788888888654 799999999999974
No 19
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=3e-24 Score=218.46 Aligned_cols=192 Identities=20% Similarity=0.322 Sum_probs=153.0
Q ss_pred CHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCccc
Q 009112 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP 158 (543)
Q Consensus 79 ~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~ 158 (543)
+.+.+++|++.+... +.. .++++.|+ +.++++.|++++.|+|++||++++++|+++++|++++|+|||+......
T Consensus 3 ~~~~~~~~~~~~~~~-~~~-~~~l~~~t---t~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g 77 (302)
T PRK14652 3 EATWRDEIARRVRGE-VLR-DAPLAPRT---AVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAG 77 (302)
T ss_pred hHHHHHHHHHhhccc-ccc-CCCccccc---EeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCC
Confidence 456778888888755 444 46788888 7899999999999999999999999999999999999999998522211
Q ss_pred CCCcEEEEeCC-CCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCCC
Q 009112 159 VFDEVIINMGS-MNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236 (543)
Q Consensus 159 ~~~gvvIdl~~-ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~ 236 (543)
.+|++|++++ ++.+ .. ++.+++|+||+.|.+|.+++.++|+. +.+..+.++ ||||+++||+|.. ||.+
T Consensus 78 -~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG--TvGGav~mNaGa~----ggei 147 (302)
T PRK14652 78 -VRGVVLRLPQDFPGE-ST--DGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG--TLGGAVAMNAGTK----LGEM 147 (302)
T ss_pred -EeeEEEEecCCcceE-Ee--cCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCc--chhHHHHHcCCCC----ceEh
Confidence 1289999977 4544 43 35689999999999999999999997 444456554 6999999999863 7779
Q ss_pred CccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCC
Q 009112 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (543)
Q Consensus 237 ~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p 293 (543)
+|+|.++++|+++| +.+.. ++..++++.+.+.++ + ||||+++||+.|..
T Consensus 148 ~d~v~~v~vv~~~G-~~~~~----~~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~ 196 (302)
T PRK14652 148 KDVVTAVELATADG-AGFVP----AAALGYAYRTCRLPP-G--AVITRVEVRLRPGD 196 (302)
T ss_pred hheEEEEEEECCCC-cEEee----hhhcCcccceeccCC-C--eEEEEEEEEEecCC
Confidence 99999999999999 44443 244566666666553 3 89999999999854
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=4e-24 Score=217.96 Aligned_cols=189 Identities=18% Similarity=0.325 Sum_probs=154.3
Q ss_pred HHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCC
Q 009112 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVF 160 (543)
Q Consensus 81 ~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~ 160 (543)
+.+++|.++++...+..+ +.+..|+ +.++++.|+++++|+|++||++++++|+++++|++++|+|||+....-. .
T Consensus 5 ~~~~~l~~~l~~~~~~~~-~~l~~~t---t~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g-~ 79 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQD-EMLKNHT---HIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGG-I 79 (305)
T ss_pred HHHHHHHHhcCcCceecC-Ccchhcc---CcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCC-e
Confidence 456778888876556655 5788887 3468999999999999999999999999999999999999999632211 1
Q ss_pred CcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCc
Q 009112 161 DEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHG 238 (543)
Q Consensus 161 ~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d 238 (543)
+|++|++++|+.| +++ +.+++|+||+.|.+|.+++.++|+. +....|.++ ||||+++||+|+ ||. +.|
T Consensus 80 ~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPG--tVGGav~~NAGa-----yG~~~~d 149 (305)
T PRK12436 80 RGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPG--SVGGALYMNAGA-----YGGEISF 149 (305)
T ss_pred eEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCcc--chhHHHHhcCcc-----chhehhe
Confidence 3899999889987 676 4579999999999999999999986 333345554 499999999998 885 788
Q ss_pred cEEEEEEEecCCcEEEccCCcccCCCCCccchhhhcc--CCCeEEEEEEEEEeccC
Q 009112 239 NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGS--EGSLGIVTKVSIHTPPK 292 (543)
Q Consensus 239 ~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs--~G~lGIIt~v~lrl~p~ 292 (543)
.+.+++|+++||++++.+++ ++.+.++.| .....||++++|++.|.
T Consensus 150 vl~~v~vv~~~G~v~~~~~~--------e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 150 VLTEAVVMTGDGELRTLTKE--------AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred eeeEEEEEeCCCCEEEEEHH--------HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 88899999999999998765 556666666 22357999999999874
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1e-23 Score=215.02 Aligned_cols=191 Identities=19% Similarity=0.327 Sum_probs=155.4
Q ss_pred CHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCccc
Q 009112 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP 158 (543)
Q Consensus 79 ~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~ 158 (543)
+++++++|+++++...+.++ +++..|+ +.++++.+++++.|+|++||++++++|+++++|++++|+|||+....-.
T Consensus 3 ~~~~~~~l~~~~~~~~v~~~-~~L~~~t---t~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g 78 (307)
T PRK13906 3 NKDIYQALQQLIPNEKIKVD-EPLKRYT---YTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGG 78 (307)
T ss_pred hHHHHHHHHHhcCCCeeecC-Cccccce---EcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCC
Confidence 45678889999976567766 6788888 5577899999999999999999999999999999999999999633221
Q ss_pred CCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccC-CC
Q 009112 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SL 236 (543)
Q Consensus 159 ~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG-~~ 236 (543)
.+|++|++++|++| +++. .+++|+||+.|.+|.+++.++|+. +....|.++ ||||++.||+|+ || .+
T Consensus 79 -~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG--tVGGav~mNaGa-----yGg~i 147 (307)
T PRK13906 79 -IRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG--SIGGAVYMNAGA-----YGGEV 147 (307)
T ss_pred -cceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCc--cHhHHHHhhCCc-----chhhh
Confidence 24899999899998 6653 589999999999999999999996 444456665 599999999988 75 69
Q ss_pred CccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccC--CCeEEEEEEEEEeccC
Q 009112 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPK 292 (543)
Q Consensus 237 ~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~--G~lGIIt~v~lrl~p~ 292 (543)
+|+|+++++|+++|++++.+++ |+...++.|. ..--||++++|++.|.
T Consensus 148 ~D~l~~v~vv~~~G~~~~~~~~--------e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 148 KDCIDYALCVNEQGSLIKLTTK--------ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred hhheeEEEEEeCCCCEEEEEHH--------HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 9999999999999999998765 2333333331 1125899999999873
No 22
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=2.4e-22 Score=203.39 Aligned_cols=190 Identities=21% Similarity=0.321 Sum_probs=159.0
Q ss_pred HHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccC
Q 009112 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (543)
Q Consensus 80 ~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~ 159 (543)
..+++.|-+..+. +. ..++++.|+ +.+++|.+++++.|+|++|+++++++|++ ++|+.+.|+|||+.....+.
T Consensus 3 ~~~~~~~~~~~~~--~~-~~~~L~~~t---t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~ 75 (297)
T PRK14653 3 RKIIETLLKYGND--VF-INEEMKCHV---SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM 75 (297)
T ss_pred hHHHHHHHHhcCe--ec-cCCcccccC---EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc
Confidence 3566666666652 44 446788888 78999999999999999999999999999 99999999999998877654
Q ss_pred CCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CC
Q 009112 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LH 237 (543)
Q Consensus 160 ~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~ 237 (543)
+|++|.+++|+.| +++. ..++|+||+.|.+|..++.++|+. |....|.|++ |||++.||+|+ ||. ++
T Consensus 76 -~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~ 144 (297)
T PRK14653 76 -DFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGS--VGGAVYMNAGA-----YGWETA 144 (297)
T ss_pred -cEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchh--HHHHHHHhCcc-----Cchhhh
Confidence 4899999789998 7763 579999999999999999999996 6655566555 99999999999 998 99
Q ss_pred ccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCC
Q 009112 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (543)
Q Consensus 238 d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p 293 (543)
|.|.++++++ +|++++.+++ ..++++.+...++++.+ ||++++|++.|..
T Consensus 145 d~l~~V~~~d-~g~v~~~~~~----e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 145 ENIVEVVAYD-GKKIIRLGKN----EIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred eeEEEEEEEC-CCEEEEEchh----hccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 9999999999 7888887654 45666677777766565 9999999998853
No 23
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.88 E-value=3.1e-22 Score=204.18 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=155.6
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccH
Q 009112 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 191 (543)
Q Consensus 112 ~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~ 191 (543)
+..+++.-|-+|+|++|+.++|+.|++++..+++.|.||+..+-.+ .+|.+|++..||+++++|++..+||||||+++
T Consensus 45 r~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c--tdg~lisl~~lnkVv~~dpe~~tvTV~aGirl 122 (518)
T KOG4730|consen 45 RSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC--TDGLLISLDKLNKVVEFDPELKTVTVQAGIRL 122 (518)
T ss_pred hhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee--ccccEEEhhhhccceeeCchhceEEeccCcCH
Confidence 4455567788999999999999999999999999999999988766 46799999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchh
Q 009112 192 ENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHL 271 (543)
Q Consensus 192 ~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~ 271 (543)
.+|.+++++.|+++|..|.+.+ .||||.+++++||....-++.......-..++.++|.++.++++ ..+++|++
T Consensus 123 rQLie~~~~~GlsL~~~~si~e-~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~A 196 (518)
T KOG4730|consen 123 RQLIEELAKLGLSLPNAPSISE-QSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFNA 196 (518)
T ss_pred HHHHHHHHhcCccccCCCceec-ceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHhh
Confidence 9999999999999997776654 69999999999997443233333333444444579998888765 55799999
Q ss_pred hhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHH
Q 009112 272 FIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSC 309 (543)
Q Consensus 272 ~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~ 309 (543)
..-|.|.||||.++||++.|..+...... +.+..++
T Consensus 197 AkvSLG~LGVIs~VTl~~vp~Fk~s~t~~--v~n~~dl 232 (518)
T KOG4730|consen 197 AKVSLGVLGVISQVTLSVVPAFKRSLTYV--VTNDSDL 232 (518)
T ss_pred hhhcccceeEEEEEEEEEEecceeeeEEE--EechHHH
Confidence 99999999999999999999987554433 3445543
No 24
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.88 E-value=1.8e-22 Score=204.10 Aligned_cols=164 Identities=21% Similarity=0.286 Sum_probs=136.0
Q ss_pred hcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCc
Q 009112 110 MRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (543)
Q Consensus 110 ~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv 189 (543)
+.++++.|+++++|+|++||++++++|+++++|++++|+|||+...+.. .++++|++++|+.+ .+++ +.+++|+||+
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~-~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~ 82 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG-RGGVIINLGKGIDI-EDDE-GEYVHVGGGE 82 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC-cCeEEEECCCCceE-EEec-CCEEEEEcCC
Confidence 5688999999999999999999999999999999999999999866543 46899999999988 4665 5689999999
Q ss_pred cHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecCCcEEEccCCcccCCCCCc
Q 009112 190 ILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYD 267 (543)
Q Consensus 190 ~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~d 267 (543)
.|.+|.+++.++|+. +....+.++ ||||+++||+|+ ||. +.|.|+++++|++||++++.+.+ |
T Consensus 83 ~~~~l~~~~~~~Gl~GlE~l~giPG--tvGGai~mNAGa-----yG~~i~d~l~~v~vv~~~G~~~~~~~~--------~ 147 (284)
T TIGR00179 83 NWHKLVKYALKNGLSGLEFLAGIPG--TVGGAVIMNAGA-----YGVEISEVLVYATILLATGKTEWLTNE--------Q 147 (284)
T ss_pred cHHHHHHHHHHCCCcccccCCCCCc--hHHHHHHHhccc-----chhehhheEEEEEEEeCCCCEEEEEHH--------H
Confidence 999999999999995 444455555 599999999999 888 66789999999999999988765 2
Q ss_pred cchhhhccC--CC-eEEEEEEEEEecc
Q 009112 268 LKHLFIGSE--GS-LGIVTKVSIHTPP 291 (543)
Q Consensus 268 L~~~~~Gs~--G~-lGIIt~v~lrl~p 291 (543)
+...++.|. .. ..||++++|++.+
T Consensus 148 ~~f~YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 148 LGFGYRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred ccccCCccccCCCCcEEEEEEEEEecc
Confidence 333333331 11 3699999999854
No 25
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.3e-21 Score=202.66 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=149.0
Q ss_pred HHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCC
Q 009112 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (543)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~ 179 (543)
.+|+.|+ +.++++.|++++.|+|++||++++++|+++++|+.++|+|||+.-..-. .+|++|+++ ++.+ +++.+
T Consensus 19 ~~L~~~t---t~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g-~~GvVI~l~-~~~i-~i~~~ 92 (363)
T PRK13903 19 VPLAPLT---TLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDG-FDGTVVRVA-TRGV-TVDCG 92 (363)
T ss_pred CCccccc---EeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCC-ccEEEEEeC-CCcE-EEeCC
Confidence 4688888 7899999999999999999999999999999999999999998532211 237999997 5887 67766
Q ss_pred CcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecC-CcEEEcc
Q 009112 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVIDML 256 (543)
Q Consensus 180 ~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~d-G~i~~~~ 256 (543)
+.+++|+||+.|.+|.+++.++|+. |....|++++ |||++.||+|+ ||. +.|.|.++++++.+ |++++..
T Consensus 93 ~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGT--VGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~~~~~~ 165 (363)
T PRK13903 93 GGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGS--AGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGEVRWVP 165 (363)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcc--hhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCEEEEEE
Confidence 6799999999999999999999998 7777788776 99999999999 887 89999999999965 9999876
Q ss_pred CCcccCCCCCccchhhhcc---CCCeEEEEEEEEEeccCC
Q 009112 257 GTLRKDNTGYDLKHLFIGS---EGSLGIVTKVSIHTPPKL 293 (543)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs---~G~lGIIt~v~lrl~p~p 293 (543)
.+ |+.+.+++| .+..+|||+++|++.|..
T Consensus 166 ~~--------el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 166 AA--------DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HH--------HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 44 788888887 234789999999999874
No 26
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=9.5e-21 Score=192.36 Aligned_cols=174 Identities=18% Similarity=0.254 Sum_probs=145.0
Q ss_pred HHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCC-CeEEeeC
Q 009112 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMN-NIITFDK 178 (543)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln-~i~~id~ 178 (543)
++|+.|+ +.++++.+++++.|+|++|+++++++|+++++|+.+.|+|||+...+.. .+|++|++++++ ++ ..+.
T Consensus 7 ~~L~~~t---t~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i-~~~~ 81 (295)
T PRK14649 7 EPLAPYT---SWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWEL-HEHG 81 (295)
T ss_pred Ccccccc---EeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEE-EEeC
Confidence 4677787 7899999999999999999999999999999999999999999765543 358999998754 55 4555
Q ss_pred CCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecCCcEEEcc
Q 009112 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (543)
Q Consensus 179 ~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~dG~i~~~~ 256 (543)
++.+++|+||+.|.+|.+++.++|+. ++...|.|+ ||||++.||+|+ ||. +.|.|.++++++.+|++++.+
T Consensus 82 ~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG--TvGGa~~mNaGa-----yg~ei~d~l~~V~~~~~~g~~~~~~ 154 (295)
T PRK14649 82 DTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG--TIGGAIYGNAGC-----YGGDTATVLIRAWLLLNGSECVEWS 154 (295)
T ss_pred CcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc--chhHHHHhhccc-----cceEhheeEEEEEEEeCCCCEEEEe
Confidence 55589999999999999999999998 888888887 699999999999 665 999999999999999999887
Q ss_pred CCcccCCCCCccchhhhccC--CC--------eEEEEEEEEEeccCC
Q 009112 257 GTLRKDNTGYDLKHLFIGSE--GS--------LGIVTKVSIHTPPKL 293 (543)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~--G~--------lGIIt~v~lrl~p~p 293 (543)
++ |+...++.|. .. --||++++|++.|..
T Consensus 155 ~~--------el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 155 VH--------DFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred HH--------HcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 65 3434444331 11 138999999998754
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=2.1e-19 Score=181.37 Aligned_cols=179 Identities=20% Similarity=0.274 Sum_probs=147.4
Q ss_pred ceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCe
Q 009112 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (543)
Q Consensus 94 ~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i 173 (543)
++....++++.|+ +.+++|.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.....+..+|++|.+.+|+.+
T Consensus 13 ~~~~~~~~L~~~t---t~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i 89 (302)
T PRK14650 13 NIKPQTKNLANYT---TYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNKI 89 (302)
T ss_pred CCCCCCccccccc---eeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEECCcCcE
Confidence 4556667788898 7899999999999999999999999999999999999999998654322124788888679988
Q ss_pred EEeeCCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecCCc
Q 009112 174 ITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGD 251 (543)
Q Consensus 174 ~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~dG~ 251 (543)
+++. ..++|+||+.|.+|..++.++|+. |....|.||+ |||++.||+|. ||. +.|.|.++++++.+|+
T Consensus 90 -~~~~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g~ 159 (302)
T PRK14650 90 -EIHD--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGT--LGGAIWMNARC-----FGNEISEILDKITFIDEKGK 159 (302)
T ss_pred -EEeC--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcc--hhHHHHhhCCc-----cccchheeEEEEEEEECCCC
Confidence 6653 469999999999999999999998 8877888876 99999999998 887 9999999999999999
Q ss_pred EEEccCCcccCCCCCccchhhhccC--CCeEEEEEEEEEeccCC
Q 009112 252 VIDMLGTLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPKL 293 (543)
Q Consensus 252 i~~~~~~~~k~~~g~dL~~~~~Gs~--G~lGIIt~v~lrl~p~p 293 (543)
+++...+ |+...++.|. ..-.||++++|++.|.+
T Consensus 160 ~~~~~~~--------e~~f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 160 TICKKFK--------KEEFKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred EEEEEHH--------HcCcccccccCCCCCEEEEEEEEEEcCCC
Confidence 9887655 2223333331 11259999999998864
No 28
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=1.5e-18 Score=172.55 Aligned_cols=173 Identities=25% Similarity=0.402 Sum_probs=147.9
Q ss_pred HHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCC
Q 009112 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (543)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~ 179 (543)
.++.+|+ ++++++.++.++.|++.+|+.++++++.+.++|+.+.|+|||+.-..-. -++++|.+.+++.+ +++.+
T Consensus 7 ~~L~~~t---tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g-~~gvvi~~~~~~~~-~~~~~ 81 (291)
T COG0812 7 VPLKRYT---TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGG-IGGVVIKLGKLNFI-EIEGD 81 (291)
T ss_pred Cccccce---eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCC-CceEEEEcccccce-eeecc
Confidence 4577788 6899999999999999999999999999999999999999997533322 35899999999887 67777
Q ss_pred CcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecCCcEEEccC
Q 009112 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLG 257 (543)
Q Consensus 180 ~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~dG~i~~~~~ 257 (543)
+..++|++|+.|.+|.+++.++|+. |....|+||+ |||++.||+|. ||. +.|.+.++++++.+|++.+.+.
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGs--vGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~~~~l~~ 154 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGS--VGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGEVRWLSA 154 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcc--cchhhhccCcc-----cccchheeEEEEEEEcCCCCEEEEEH
Confidence 6799999999999999999999998 8877888876 99999999998 898 9999999999999999999876
Q ss_pred CcccCCCCCccchhhhccC--CCeEEEEEEEEEeccC
Q 009112 258 TLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPK 292 (543)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~--G~lGIIt~v~lrl~p~ 292 (543)
+ ++...++-|. ..-.||++++|++.|-
T Consensus 155 ~--------el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 155 E--------ELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred H--------HhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 6 3334444442 1228999999999985
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=9.8e-19 Score=179.12 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=142.4
Q ss_pred HHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEee-C
Q 009112 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD-K 178 (543)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id-~ 178 (543)
++++.|+ +.+++|.+++++.|+|++|+++++++|+++++|+.+.|+|||+.-.. . .+|++|.+ +++.+ +++ .
T Consensus 7 ~~L~~~t---t~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~-~~~~~ 79 (334)
T PRK00046 7 HSLKPLN---TFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGI-EVLSE 79 (334)
T ss_pred Ccccccc---eeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCce-EEEec
Confidence 4677788 77999999999999999999999999999999999999999997655 4 56888887 48888 562 2
Q ss_pred -CC-cEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecC-CcEE
Q 009112 179 -GS-GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVI 253 (543)
Q Consensus 179 -~~-~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~d-G~i~ 253 (543)
++ ..++|+||+.|.+|.+++.++|+. |....|+||+ |||++.||+|. ||. +.|.|.++++++.+ |+++
T Consensus 80 ~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~~~ 152 (334)
T PRK00046 80 DDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGT--VGAAPIQNIGA-----YGVELKDVCDYVEALDLATGEFV 152 (334)
T ss_pred CCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcc--hhHHHHhcCCc-----CcccHheeEEEEEEEECCCCcEE
Confidence 22 379999999999999999999998 7777788776 99999999999 886 99999999999987 9999
Q ss_pred EccCCcccCCCCCccchhhhccC--CC---eEEEEEEEEEeccC
Q 009112 254 DMLGTLRKDNTGYDLKHLFIGSE--GS---LGIVTKVSIHTPPK 292 (543)
Q Consensus 254 ~~~~~~~k~~~g~dL~~~~~Gs~--G~---lGIIt~v~lrl~p~ 292 (543)
+..++ |+...++.|. .. --||++++|++.|.
T Consensus 153 ~~~~~--------e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 153 RLSAA--------ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEHH--------HcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 88765 3333333331 11 24999999999885
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=3e-18 Score=175.28 Aligned_cols=142 Identities=15% Similarity=0.295 Sum_probs=122.1
Q ss_pred ceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCe
Q 009112 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (543)
Q Consensus 94 ~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i 173 (543)
+++....+|+.|+ +.+++|.+++++.|+|.+|+++++++|+++++|+.+.|+|||+....-+ .+|+||.+.+|+.+
T Consensus 10 ~~~~~~~~La~~t---T~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g-~~G~VI~l~~~~~i 85 (354)
T PRK14648 10 RITRRNVPLAERC---SFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEG-VPGLMLSLRRFRSL 85 (354)
T ss_pred eeeecCCCccccc---eeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCC-ccEEEEEeCCcCce
Confidence 4455556788888 7899999999999999999999999999999999999999999655433 34899999779887
Q ss_pred EEe---eCCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEe
Q 009112 174 ITF---DKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVL 247 (543)
Q Consensus 174 ~~i---d~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~ 247 (543)
++ +.+...++|+||+.|.+|.+++.++|+. |....|+||+ |||++.||+|. ||. +.|.|.++++++
T Consensus 86 -~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGT--VGGAv~mNAGA-----yG~ei~d~l~~V~v~d 156 (354)
T PRK14648 86 -HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGS--VGGAAYMNARC-----YGRAIADCFHSARTLV 156 (354)
T ss_pred -EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcc--hhhHhhhcCCc-----cceEhhheEEEEEEEe
Confidence 44 2233479999999999999999999998 7777788876 99999999998 887 999999999993
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=1.2e-15 Score=152.02 Aligned_cols=160 Identities=20% Similarity=0.228 Sum_probs=128.1
Q ss_pred HHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCC-CCCeEEeeC
Q 009112 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 178 (543)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~-ln~i~~id~ 178 (543)
.+++.|+ +.++++.+++++ |+|.+|+++++ ++|+.+.|+|||+.-..-. .+|++|.+.+ ++.+ +++
T Consensus 7 ~~L~~~t---t~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g-~~g~vI~l~~~~~~~-~~~- 73 (273)
T PRK14651 7 VPLARYT---TLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAG-VPERVIRLGGEFAEW-DLD- 73 (273)
T ss_pred Ccccccc---EeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCC-cceEEEEECCcceeE-eEC-
Confidence 4677788 679999999999 99999999998 4899999999998654322 2488888866 6665 443
Q ss_pred CCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecCCcEEEcc
Q 009112 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (543)
Q Consensus 179 ~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~dG~i~~~~ 256 (543)
. +|+||+.|.+|.+++.++|+. |....|.|++ |||++.||+|. ||. +.|.|.++++++ +|++.+..
T Consensus 74 -~---~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~~~~~~ 141 (273)
T PRK14651 74 -G---WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQ--VGGAVKMNAGT-----RFGEMADALHTVEIVH-DGGFHQYS 141 (273)
T ss_pred -C---EEECCCcHHHHHHHHHHCCCcchhhhcCCCcc--hhhHHHhhCCc-----cccChheeEEEEEEEE-CCCEEEEE
Confidence 2 699999999999999999998 7777788776 99999999998 886 999999999997 89999887
Q ss_pred CCcccCCCCCccchhhhccC-CCeEEEEEEEEEeccC
Q 009112 257 GTLRKDNTGYDLKHLFIGSE-GSLGIVTKVSIHTPPK 292 (543)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~-G~lGIIt~v~lrl~p~ 292 (543)
++ ++...++.|. -.--||++++|++.|.
T Consensus 142 ~~--------e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 142 PD--------ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred HH--------HccccccccCCCCCEEEEEEEEEECCC
Confidence 65 2223333331 0114999999999885
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=152.33 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=129.1
Q ss_pred EEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEE
Q 009112 164 IINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGL 243 (543)
Q Consensus 164 vIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~ 243 (543)
-|++..|..|+++|.++++|+|||+|+++++.++|-+.|++||+.|.. +..||||.|.+-+--..|.+||...+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~El-dDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPEL-DDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeeccc-ccceecceeeecccccccchhhhHHhhhhee
Confidence 345556778889999999999999999999999999999999987764 5789999998777777789999999999999
Q ss_pred EEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHH
Q 009112 244 EAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLRE 315 (543)
Q Consensus 244 evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~ 315 (543)
|||++||+++++.++ +...||+.++-.|+||+|..+.+++|+.|.-+.+...+.+..++++..+-+.+
T Consensus 184 EvVladGelv~~t~d----ne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e 251 (543)
T KOG1262|consen 184 EVVLADGELVRVTPD----NEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITE 251 (543)
T ss_pred EEEecCCeEEEecCC----cccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHh
Confidence 999999999998764 45569999999999999999999999999998888888888888776655544
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.51 E-value=6.5e-14 Score=138.42 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=121.4
Q ss_pred CHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEee
Q 009112 98 DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD 177 (543)
Q Consensus 98 ~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id 177 (543)
...+|+.|+ +.+++|.+++++.|++.+ + ++|+.+.|+|||+.-.... . +.++-+++++.+ +++
T Consensus 3 ~~~~L~~~t---t~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g-~-~~vv~~~~~~~~-~~~ 65 (257)
T PRK13904 3 KIIDFSKYS---SVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNP-K-NLAILGKNFDYI-KID 65 (257)
T ss_pred cCcchhhcC---ceeECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCC-c-cEEEEccCcCeE-EEe
Confidence 346688888 789999999999999887 5 7999999999998654432 2 344434568887 665
Q ss_pred CCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEecCCcEEEc
Q 009112 178 KGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDM 255 (543)
Q Consensus 178 ~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~dG~i~~~ 255 (543)
. ..++|+||+.|.+|.+++.++|+. |....|.|++ |||++.||+|. ||. +.|.|.++++++ | +.
T Consensus 66 ~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGt--VGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~---~~ 131 (257)
T PRK13904 66 G--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGT--LGGLVKMNAGL-----KEYEISNNLESICTNG--G---WI 131 (257)
T ss_pred C--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCcc--HHHHHHhcCCc-----CccchheeEEEEEEEe--e---EE
Confidence 4 479999999999999999999998 8877888876 99999999998 887 999999999997 4 22
Q ss_pred cCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCC
Q 009112 256 LGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (543)
Q Consensus 256 ~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p 293 (543)
.++ |+...++.|.=. .||++++|++.|..
T Consensus 132 ~~~--------e~~f~YR~S~~~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 132 EKE--------DIGFGYRSSGIN-GVILEARFKKTHGF 160 (257)
T ss_pred eHH--------HCcccccCcCCC-cEEEEEEEEECCCC
Confidence 222 333334433211 39999999999865
No 34
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=98.25 E-value=3.3e-05 Score=75.94 Aligned_cols=219 Identities=15% Similarity=0.208 Sum_probs=115.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcCCC---------------------------CCC-
Q 009112 298 LAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVR---------------------------NPF- 349 (543)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~---------------------------~p~- 349 (543)
++++..++.+++.+.=+.+...+...|.+.|||.+.+.+++..|.+++- .|+
T Consensus 1 VFYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~~YGKDtfl~I~~lGt~~lP~lFa~K~~~D~~~~k~~~l 80 (291)
T PF09330_consen 1 VFYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAEKYGKDTFLMIKKLGTDRLPRLFALKARIDALLEKLPFL 80 (291)
T ss_dssp EEEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH---------------------------------------
T ss_pred CeEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHHHhcchHHHHHHHhCchhHHHHHHHHHHHHHHHHhcCCC
Confidence 3567788888777766666677778899999999998888776643210 000
Q ss_pred C----CC----------------------CCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHH
Q 009112 350 S----SS----------------------MHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFW 403 (543)
Q Consensus 350 ~----~~----------------------~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 403 (543)
+ +. .+...+++.+.+...++. +.+++..-.... ....+.++++|.....
T Consensus 81 p~~lsDr~lQ~~s~l~P~hLP~Rm~~yr~ryeHHLilkm~~~gi~ea----~~~L~~~f~~~~-~G~~feCt~~E~~~A~ 155 (291)
T PF09330_consen 81 PPNLSDRVLQALSNLLPNHLPKRMRDYRDRYEHHLILKMSGDGIEEA----RAYLKEFFAKAE-DGDFFECTPEEGKKAF 155 (291)
T ss_dssp ---------------------HHHHHHHHH-SEEEEEEE-TTHHHHH----HHHHHHHCCCSS---EEEE--HHHHHHHH
T ss_pred CCCccHHHHHHHHhhChhhcCHHHHHHHHhhhhheeeeecCCcHHHH----HHHHHHHhcccC-CCceEeeCHHHHHHHH
Confidence 0 00 023347777776654333 344444322211 1235667777776655
Q ss_pred HHHHHHHHHHHh--------cCceeEEeeecchhhHHHHHHHHHHHHhhc-CcEEEeeecCCCceEEEeccCCCChHHHH
Q 009112 404 RIREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLGET-AKVIGYGHLGDGNLHLNISAPRYDDMIFA 474 (543)
Q Consensus 404 ~~R~~~~~~~~~--------~g~~~~~D~~vp~~~l~~~~~~~~~~~~~~-g~~~~~gH~gdGnlH~~i~~~~~~~~~~~ 474 (543)
-.|-.+..+.-+ .......|+++|...- +.++.+-+.++.. -..+.|||+.--.+|-..++....+ ..
T Consensus 156 LhRFaaAgAaiRY~avh~~~vedivaLDiALrRNd~-dW~E~LP~ei~~~i~~klyyGHF~ChVfHQDYivKkGvD--~~ 232 (291)
T PF09330_consen 156 LHRFAAAGAAIRYRAVHRKEVEDIVALDIALRRNDR-DWFETLPPEIEDQIVHKLYYGHFFCHVFHQDYIVKKGVD--PH 232 (291)
T ss_dssp HHHTTHHHHHHHHHHHTCCCEECEEEEEEE-BTT-S---S----HHHHTTEEEEEEEEECCCTEEEEEEEEETTS---HH
T ss_pred HHHHHhhhhhHHHHHhccccccceeeeeeeecCCch-hhhhhCCHHHHHHHHHHeeccccchhhchhhhhhccCCC--HH
Confidence 545443332211 1135679999986553 3333333333332 1346689988778898877644332 24
Q ss_pred HHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCc
Q 009112 475 QIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYK 534 (543)
Q Consensus 475 ~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk 534 (543)
+++..+.+.+.+.|+..-+||.+|-.- ..-..|++.=+.+||.|-||||-
T Consensus 233 alk~~ml~lLd~RGAeYPAEHNVGHLY----------~Akp~L~~fY~~lDPtNsfNPGI 282 (291)
T PF09330_consen 233 ALKHEMLALLDARGAEYPAEHNVGHLY----------HAKPALKAFYRKLDPTNSFNPGI 282 (291)
T ss_dssp HHHHHHHHHHHHCT-BSSSSS--TTTS-------------HHHHHHHHHH-TT--BSTTT
T ss_pred HHHHHHHHHHHHhCCCCCcccCCCccc----------cCCHHHHHHHHhcCCCcCCCCCc
Confidence 577788999999999999999999652 23455666677789999999994
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=97.20 E-value=0.00059 Score=68.46 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=70.0
Q ss_pred EEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHH
Q 009112 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL 198 (543)
Q Consensus 119 ~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l 198 (543)
-+..|+|.+|+.++++- ++=...+.+|||.+.-..-.....++||++++ .+-.+..+++.++++|++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 47899999999999873 22124668999998422111134789999986 554555567789999999999998753
Q ss_pred Hhc-CCc-----cccCCCCCCcceecccccCCc
Q 009112 199 DDH-GFI-----MPLDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 199 ~~~-Gl~-----lp~~~g~~~~~tvGG~va~na 225 (543)
.-. .+. +. +|...+.+|+||+|++..
T Consensus 80 ~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~ 111 (258)
T PRK09799 80 FIPAALREALGFVY-SRHLRNQSTIGGEIAARQ 111 (258)
T ss_pred ccHHHHHHHHHHhC-CHHHhccchhHHHhhcCC
Confidence 211 111 22 456677899999998654
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.94 E-value=0.0014 Score=65.66 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=67.9
Q ss_pred EEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHH-
Q 009112 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL- 198 (543)
Q Consensus 120 vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l- 198 (543)
+++|+|.+|..++++- ++=.-.+.+|||.+.-........++||++++ .+..|..+++.++++|++++.++.+..
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 6789999999998873 21123557999998432211123689999886 554555556789999999999987532
Q ss_pred -----HhcCCccccCCCCCCcceecccccCCc
Q 009112 199 -----DDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 199 -----~~~Gl~lp~~~g~~~~~tvGG~va~na 225 (543)
.+.=..+. +|...+.+|+||++++..
T Consensus 80 ~~~~L~~aa~~va-~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 80 TPAALKEALGFVY-SRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred hHHHHHHHHHHhC-CHHHhccccHHHHhhcCC
Confidence 11111122 466677899999998654
No 37
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.88 E-value=0.0003 Score=66.12 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=64.3
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcc--cCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHH
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~ 195 (543)
-.+++|+|.+|+.++++ ... ...+.+|||.+.-..- ......+||++++..+..|..++..++++|++++.++.
T Consensus 3 ~~~~~P~sl~ea~~ll~--~~~--~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA--KGP--DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELE 78 (171)
T ss_dssp -EEEE-SSHHHHHHHHH--HGT--TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHH
T ss_pred eEEEccCCHHHHHHHHh--cCC--CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHh
Confidence 45789999999999999 233 3467899998632110 01236899999865544444456789999999999998
Q ss_pred HH---------HHhcCCccccCCCCCCcceecccccCCc
Q 009112 196 SF---------LDDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 196 ~~---------l~~~Gl~lp~~~g~~~~~tvGG~va~na 225 (543)
+. |.++=..+. .+.....+|+||+++...
T Consensus 79 ~~~~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 79 ESPLIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTB
T ss_pred hcchhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccCc
Confidence 86 111111122 244456789999996543
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.59 E-value=0.0045 Score=67.36 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=73.4
Q ss_pred CccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc-cc-CCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHH
Q 009112 116 SSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-VP-VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILEN 193 (543)
Q Consensus 116 ~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~-~~-~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~ 193 (543)
...-+++|+|.+|+.++++-- . ...+.+|||.+.-.. .. .....+||++++..+-.|..++..++++|++++.+
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~~---~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~e 266 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAAH---P-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTD 266 (467)
T ss_pred CCceEECCCCHHHHHHHHhhC---C-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHH
Confidence 345689999999999998742 2 246689999873221 11 12368999998665544555567899999999999
Q ss_pred HHHHHHhc--CCc-----cccCCCCCCcceecccccCCc
Q 009112 194 LVSFLDDH--GFI-----MPLDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 194 L~~~l~~~--Gl~-----lp~~~g~~~~~tvGG~va~na 225 (543)
+.+.+.++ .+. +. .|...+.+||||+|++..
T Consensus 267 l~~~l~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 267 AYAALAKRYPELGELLRRFA-SLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHHHHhHHHHHHHHHhC-CHHHcCceecccccccCC
Confidence 98776654 111 22 455677899999998753
No 39
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=96.26 E-value=0.0072 Score=61.78 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=68.1
Q ss_pred EEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc-cc-CCCcEEEEeCCCCCeEEee-CCCcEEEEeCCccHHHHH
Q 009112 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-VP-VFDEVIINMGSMNNIITFD-KGSGVLVCEAGCILENLV 195 (543)
Q Consensus 119 ~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~-~~-~~~gvvIdl~~ln~i~~id-~~~~~v~v~aGv~~~~L~ 195 (543)
-++.|+|.+|..++++-- . ...+.+|||.+.... .. .....+||++++..+-.|. .++..++++|++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLADN---P-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHhC---C-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 578999999999998742 1 236689999873211 11 1337899999866544454 244679999999999998
Q ss_pred H--HHHhcC-------CccccCCCCCCcceecccccCCc
Q 009112 196 S--FLDDHG-------FIMPLDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 196 ~--~l~~~G-------l~lp~~~g~~~~~tvGG~va~na 225 (543)
+ .+.++- ..+ -+|...+.+|+||+|++..
T Consensus 82 ~~~~i~~~~p~L~~a~~~i-a~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSI-GGPQIRNVATIGGNICNGA 119 (291)
T ss_pred cChHHHHHhHHHHHHHHHh-CCHHHhcceecccccccCC
Confidence 6 222210 012 2456677899999998653
No 40
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.16 E-value=0.011 Score=59.62 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=59.0
Q ss_pred eeEEeeecchhhHHHHHHHHHHHH-hhc---CcEEEeee------------cCCCceEE--EeccCC---CChH---HHH
Q 009112 419 VYKYDLSLPVEKMYDLVEKMRQRL-GET---AKVIGYGH------------LGDGNLHL--NISAPR---YDDM---IFA 474 (543)
Q Consensus 419 ~~~~D~~vp~~~l~~~~~~~~~~~-~~~---g~~~~~gH------------~gdGnlH~--~i~~~~---~~~~---~~~ 474 (543)
..+.++.||-+++.++.+.+.+.+ ... |.++.|.- .-+..+-+ .++... ...+ .+.
T Consensus 141 HPWlnlfvP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~~~~~~l~~l~ 220 (281)
T PF09265_consen 141 HPWLNLFVPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPSDGPDDLERLL 220 (281)
T ss_dssp ---EEEEEEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TTSSCCHHHHHH
T ss_pred CcceeeecchHHHHHHHHHHHHHhhccCCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCCCCchhHHHHH
Confidence 457999999999999988766543 221 23333321 01232222 122111 1122 223
Q ss_pred HHHHHHHHHHHhc--CCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcc
Q 009112 475 QIEPYVYEWTSEH--RGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKV 535 (543)
Q Consensus 475 ~~~~~~~~~~~~~--gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk~ 535 (543)
+-...+.+.+.+. ||...-.|= ....+| ...+| ..++.+.+.|+.|||++||.||.-
T Consensus 221 ~qN~~il~~c~~agi~~k~Yl~~~--~t~~dW-~~HFG-~~W~~f~~~K~~yDP~~IL~PGq~ 279 (281)
T PF09265_consen 221 EQNRRILEFCRKAGIGGKQYLPHY--TTQEDW-RRHFG-PKWERFVERKRRYDPKAILAPGQG 279 (281)
T ss_dssp HHHHHHHHHHHHTT--EEESS-----SSHHHH-HHHHG-HHHHHHHHHHHHH-TT--B-GGG-
T ss_pred HHHHHHHHHHHHcCCceEECCCCC--CCHHHH-HHHhc-hHHHHHHHHHHhCCchhhcCCCCC
Confidence 3345678888554 455544343 233455 55667 689999999999999999999964
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.99 E-value=0.0077 Score=62.20 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=67.2
Q ss_pred EEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCccc--CCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHH
Q 009112 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP--VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (543)
Q Consensus 119 ~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~--~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~ 196 (543)
-+++|+|.+|..++++-.. + -.+.+|||.+...... .....+||++++..+-.|+.+++.++++|+|++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~~~--~--a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAAHP--A--ARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhhCC--C--CEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 4789999999999887431 2 2568999976322111 12378999997654434444567799999999999965
Q ss_pred H--HHhc-------CCccccCCCCCCcceecccccCCc
Q 009112 197 F--LDDH-------GFIMPLDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 197 ~--l~~~-------Gl~lp~~~g~~~~~tvGG~va~na 225 (543)
. +..+ =..+ -+|.....+|+||+|++..
T Consensus 82 ~~~i~~~~p~L~~a~~~i-as~qIRN~aTiGGNi~~~~ 118 (321)
T TIGR03195 82 DALVRTRWPALAQAARAV-AGPTHRAAATLGGNLCLDT 118 (321)
T ss_pred ChhhHhHhHHHHHHHHHh-CCHHHhCceecHHhhhccC
Confidence 2 1111 0012 2456667899999999643
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=95.86 E-value=0.007 Score=60.97 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCccc---CCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHH--
Q 009112 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP---VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 197 (543)
Q Consensus 123 P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~---~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~-- 197 (543)
|+|.+|+.++++-. . ...+.+|||.+.-.... .....+||++++..+..|+.+++.++++|++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78999999988743 1 23568999987432111 124789999997766666666788999999999999742
Q ss_pred HHhc--CCc----cccCCCCCCcceecccccCC
Q 009112 198 LDDH--GFI----MPLDLGAKGSCQIGGNVSTN 224 (543)
Q Consensus 198 l~~~--Gl~----lp~~~g~~~~~tvGG~va~n 224 (543)
+.++ .+. .--+|...+.+|+||+|++.
T Consensus 77 i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 1111 000 01245667789999999765
No 43
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=95.72 E-value=0.0043 Score=45.23 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=22.8
Q ss_pred hhhhccCCHHHHHHHHHHhHhcCCCCCCCCC
Q 009112 503 NKIFYSKSPKTVQLMSSIKKLLDPNGILNPY 533 (543)
Q Consensus 503 ~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPG 533 (543)
+|....+| ++++.|++||+.+||+++|.-.
T Consensus 14 ~~~~~yyg-~n~~rL~~iK~~yDP~n~F~~~ 43 (47)
T PF08031_consen 14 DWQEAYYG-ENYDRLRAIKRKYDPDNVFRFP 43 (47)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHH-TT-TS-ST
T ss_pred HHHHHHhc-hhHHHHHHHHHHhCccceeCCC
Confidence 56667778 6899999999999999999743
No 44
>PLN02906 xanthine dehydrogenase
Probab=94.18 E-value=0.086 Score=64.51 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=72.6
Q ss_pred ccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc-c-cCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHH
Q 009112 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (543)
Q Consensus 117 p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~-~-~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L 194 (543)
..-+++|+|.+|+.++++-.. + ..+.+|||.+.-.. . -....++||++++..+..|..++..++++|++++.+|
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~~--~--a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el 303 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEYP--D--AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSEL 303 (1319)
T ss_pred CceEECcCCHHHHHHHHHhCC--C--CEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHH
Confidence 345889999999999887431 2 35678999883221 1 1134789999986655555556678999999999999
Q ss_pred HHHHHhcCC--------ccc---------cCCCCCCcceecccccCCc
Q 009112 195 VSFLDDHGF--------IMP---------LDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 195 ~~~l~~~Gl--------~lp---------~~~g~~~~~tvGG~va~na 225 (543)
.+.|.+.=. .+| -.+...+.+||||+|++..
T Consensus 304 ~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 304 QNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 987654310 011 1355667899999998753
No 45
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=94.17 E-value=0.25 Score=49.47 Aligned_cols=107 Identities=12% Similarity=0.229 Sum_probs=61.1
Q ss_pred eeEEeeecchhhHHHHHHHHHHHHhhcC--c----E-EEe--------eecCCC-ceEEEeccCCCCh--HHHHHHHHHH
Q 009112 419 VYKYDLSLPVEKMYDLVEKMRQRLGETA--K----V-IGY--------GHLGDG-NLHLNISAPRYDD--MIFAQIEPYV 480 (543)
Q Consensus 419 ~~~~D~~vp~~~l~~~~~~~~~~~~~~g--~----~-~~~--------gH~gdG-nlH~~i~~~~~~~--~~~~~~~~~~ 480 (543)
....++++|.++..++++++++.+.+.+ . + +-| +...++ .+++.+....... ...+.....+
T Consensus 125 ~~~~E~~iP~~~~~~~l~~l~~~~~~~~~~~~~~pie~R~~~~d~~~Ls~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 204 (259)
T PF04030_consen 125 FWEMEYAIPIENAPEALRELRALIDKEGGFPVHFPIEVRFVKADDAWLSPAYGRDTCYIEIHMYRPMGDPVPYEEFFRAF 204 (259)
T ss_dssp --EEEEEEEGGGHHHHHHHHHHTHHHHG--GGEEEEEEEEE--B-STT-TTBTS-EEEEEEEE-S-HH---HHHHHHHHH
T ss_pred ceeEEEeeCHHHHHHHHHHHHHHHHHcccCceeEEEEEEEECCChhhcCCCCCCCEEEEEEEEeCCccccccHHHHHHHH
Confidence 4567999999999999999999887765 1 1 001 111112 3444443311111 1134455567
Q ss_pred HHHHHhcCCeEEeeccCCc---hhhhhhhccCCHHHHHHHHHHhHhcCCCCCCC
Q 009112 481 YEWTSEHRGSISAEHGLGL---MKANKIFYSKSPKTVQLMSSIKKLLDPNGILN 531 (543)
Q Consensus 481 ~~~~~~~gGsis~eHGiG~---~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlN 531 (543)
.+++.++||..- -|+ ...+.+...| +.++.+.++|+++||+|+|.
T Consensus 205 e~~~~~~ggRpH----WgK~~~~~~~~l~~~Y--p~~~~F~~~r~~~DP~g~F~ 252 (259)
T PF04030_consen 205 EQILRKYGGRPH----WGKNHTLTAEQLRKLY--PRLDDFLAVRKKLDPQGVFL 252 (259)
T ss_dssp HHHHGGGT-EE-----TTS-----HHHHHHT---TTHHHHHHHHHHH-TT-TT-
T ss_pred HHHHHHcCCEEC----cCcCCCCCHHHHHHHC--cCHHHHHHHHHHhCCCCCCC
Confidence 778899999753 122 1234566666 47999999999999999985
No 46
>PLN00192 aldehyde oxidase
Probab=94.14 E-value=0.13 Score=63.19 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=72.9
Q ss_pred ccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHH
Q 009112 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (543)
Q Consensus 117 p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~ 196 (543)
..-++.|.|.+|+.++++-....+-...+..|||.+.-.-......++||++++..+..|..++..++++|++++.++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 34689999999999998742100112456788888732111112378999998665555555667899999999999998
Q ss_pred HHHhcCC---ccc---------cCCCCCCcceecccccCCc
Q 009112 197 FLDDHGF---IMP---------LDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 197 ~l~~~Gl---~lp---------~~~g~~~~~tvGG~va~na 225 (543)
.+...-. .+| -.+...+.+|+||+|++..
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 7765421 112 1355667899999998653
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.68 E-value=0.13 Score=63.07 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=72.1
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc-c-cCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHH
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~-~-~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~ 195 (543)
.-++.|+|.+|+.++++-. .+ -.+..|||.+.-.. . ......+||++++..+..+..++..++++|++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~--~~--a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY--PQ--APVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC--CC--CEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4689999999999998743 12 35678999883221 1 11235899999866665566566789999999999999
Q ss_pred HHHHhc----C----Cccc---------cCCCCCCcceecccccCCc
Q 009112 196 SFLDDH----G----FIMP---------LDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 196 ~~l~~~----G----l~lp---------~~~g~~~~~tvGG~va~na 225 (543)
+.|.+. . -.+| -.+...+.+|+||+|++..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 876543 0 0011 1355677899999998754
No 48
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=93.32 E-value=0.24 Score=51.17 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=80.9
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccC---CCcEEEEeCCCCCeEEeeCCCcEEEEeCC
Q 009112 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAG 188 (543)
Q Consensus 112 ~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~---~~gvvIdl~~ln~i~~id~~~~~v~v~aG 188 (543)
.+++..+.++.|.+.+|.+.++.. .-+. ++..|+|.+. --+.. +-..+|-...+..+..|+...+.++++||
T Consensus 198 ~~~~~~~r~~~P~~l~D~a~l~aa--~P~A--tivAGsTDvg-LwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAg 272 (493)
T COG4630 198 EVGSGDDRFIVPATLADFADLLAA--HPGA--TIVAGSTDVG-LWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAG 272 (493)
T ss_pred EecCCCceeEeeccHHHHHHHHhh--CCCC--EEEecCcchh-hHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccC
Confidence 355566889999999999999852 3343 4456666652 22211 11446666666665566667789999999
Q ss_pred ccHHHHHHHHHhcCCc----ccc--CCCCCCcceecccccCCcCCCCccccCCC--CccEEEEEEEecCCc
Q 009112 189 CILENLVSFLDDHGFI----MPL--DLGAKGSCQIGGNVSTNAGGLRLVRYGSL--HGNVLGLEAVLANGD 251 (543)
Q Consensus 189 v~~~~L~~~l~~~Gl~----lp~--~~g~~~~~tvGG~va~na~G~~~~~yG~~--~d~V~~~evV~~dG~ 251 (543)
+++.+.+++|..+=-. ++- .-...+..|+||+|++++- -|.. .=..++.++++-.|+
T Consensus 273 vt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~ 337 (493)
T COG4630 273 VTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGD 337 (493)
T ss_pred ccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecC
Confidence 9999999999876211 110 0112356789999987531 1221 114566677765554
No 49
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=92.50 E-value=0.36 Score=48.96 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=69.2
Q ss_pred ccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcc--cCCCcEEEEeCCCCCeEE-eeCCCcEEEEeCCccHHH
Q 009112 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIIT-FDKGSGVLVCEAGCILEN 193 (543)
Q Consensus 117 p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~i~~-id~~~~~v~v~aGv~~~~ 193 (543)
+-.+.+|.|.+|...+++-.. -..+.+|||++....- -....-+||++++..... ...+++.++++|-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~~----~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLARAP----DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHHhCC----CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 345889999999998887332 3466799999863111 113467899988742222 333566799999999999
Q ss_pred HHHHHHhcCCc--------cccCCCCCCcceecccccCCcC
Q 009112 194 LVSFLDDHGFI--------MPLDLGAKGSCQIGGNVSTNAG 226 (543)
Q Consensus 194 L~~~l~~~Gl~--------lp~~~g~~~~~tvGG~va~na~ 226 (543)
+.+--.-+... .--+|...+.+|+||+++.+.+
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred HHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCC
Confidence 86332111111 1236777788999999765543
No 50
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=91.43 E-value=1.1 Score=44.51 Aligned_cols=106 Identities=16% Similarity=0.276 Sum_probs=62.6
Q ss_pred eEEeeecchhhHHHHHHHHHHHHhhcC------c----E-EEe-----eecCCC--c--eEEEeccCCCC---hHHHHHH
Q 009112 420 YKYDLSLPVEKMYDLVEKMRQRLGETA------K----V-IGY-----GHLGDG--N--LHLNISAPRYD---DMIFAQI 476 (543)
Q Consensus 420 ~~~D~~vp~~~l~~~~~~~~~~~~~~g------~----~-~~~-----gH~gdG--n--lH~~i~~~~~~---~~~~~~~ 476 (543)
...+.+||.++..++++++++..+... + + +-| .+++-+ . +|+.......+ +...+.+
T Consensus 63 ~E~EyaVP~e~~~~aL~elr~l~~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~ 142 (257)
T PLN00107 63 FQSAISVPLSGAAAFINDIKALRDIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDA 142 (257)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHH
Confidence 456899999999999999999877652 1 0 101 122211 2 33333221101 1133345
Q ss_pred HHHHHHH-HHhcCCeEEeeccCCchh---hhhhhccCCHHHHHHHHHHhHhcCCCCCCC
Q 009112 477 EPYVYEW-TSEHRGSISAEHGLGLMK---ANKIFYSKSPKTVQLMSSIKKLLDPNGILN 531 (543)
Q Consensus 477 ~~~~~~~-~~~~gGsis~eHGiG~~k---~~~l~~~~g~~~~~~m~~iK~~~DP~gIlN 531 (543)
.+.+.++ +.++||.. | -|+.. .+.+...| .+++.+.++|+.+||+|+|-
T Consensus 143 f~eiEqial~kygGRP---H-WGK~h~l~~~~l~~lY--Pr~~dFlavR~~lDP~G~F~ 195 (257)
T PLN00107 143 MEEIEQMAILKYGALP---H-WGKNRNAAFDGAIAKY--KKAGEFLKVKERLDPEGLFS 195 (257)
T ss_pred HHHHHHHHHHhcCCcC---C-chhccCCCHHHHHHHC--cCHHHHHHHHHHhCCCCccC
Confidence 5566656 78899964 2 22221 22344444 36889999999999999874
No 51
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=51.20 E-value=82 Score=35.16 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=22.5
Q ss_pred eEEeeecchh-------hHHHHHHHHHHHHhhcC
Q 009112 420 YKYDLSLPVE-------KMYDLVEKMRQRLGETA 446 (543)
Q Consensus 420 ~~~D~~vp~~-------~l~~~~~~~~~~~~~~g 446 (543)
+..++++|.+ +..++++++++.+++.+
T Consensus 381 ~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~ 414 (541)
T TIGR01676 381 WVSETCFPAGTLAKPNMKDIEYIEELKQLIEKEN 414 (541)
T ss_pred EEEEEEEecccccccccchHHHHHHHHHHHHhcC
Confidence 4468999999 55999999999988864
No 52
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=46.64 E-value=34 Score=40.93 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=66.3
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHH
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 197 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~ 197 (543)
.....|.|.+|+.++++ ..-......|+|...---...+....||.+.......++.++.-++++|++++.+..+.
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 45678999999999998 22233444555543111111123467888775544344445566899999999999888
Q ss_pred HHhcCCccc---------------cCCCCCCcceecccccCCcCC
Q 009112 198 LDDHGFIMP---------------LDLGAKGSCQIGGNVSTNAGG 227 (543)
Q Consensus 198 l~~~Gl~lp---------------~~~g~~~~~tvGG~va~na~G 227 (543)
|.+.-- .| -.......+|+||+|.+.+.+
T Consensus 291 l~~~~~-~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~ 334 (1257)
T KOG0430|consen 291 LRKLVK-RPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQS 334 (1257)
T ss_pred HHHHHh-CcHHHHHHHHHHHHHHhcccceeccccccceeEeccCC
Confidence 765432 11 123455678899999877655
No 53
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=37.03 E-value=36 Score=37.97 Aligned_cols=84 Identities=19% Similarity=0.316 Sum_probs=50.7
Q ss_pred CCCc-cEEEecCCHHHHHHHHHHhhcCC-ceEEE---EcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCC
Q 009112 114 RGSS-KLLLQPRTTNEVSQILKYCNSRL-LAVVP---QGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAG 188 (543)
Q Consensus 114 ~~~p-~~vv~P~s~~dV~~il~~a~~~~-~pv~~---~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aG 188 (543)
++-| -.+..|++++|++++|.+|..++ -|+.+ ||.|.+..-. ...-.++.++ -.+ +-+.+..+-+.=|
T Consensus 438 ~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~----~~~~~~~~Gk-~~i--~~~G~~vail~~G 510 (627)
T COG1154 438 RCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILT----PELEPLEIGK-GEL--LKEGEKVAILAFG 510 (627)
T ss_pred hcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcc----cccccccccc-eEE--EecCCcEEEEecc
Confidence 4455 56778999999999999999988 58865 4665543111 0112333333 111 2335566677777
Q ss_pred ccHHH---HHHHHHhcCCc
Q 009112 189 CILEN---LVSFLDDHGFI 204 (543)
Q Consensus 189 v~~~~---L~~~l~~~Gl~ 204 (543)
..+.. +.+.|.++|+.
T Consensus 511 ~~~~~al~vae~L~~~Gi~ 529 (627)
T COG1154 511 TMLPEALKVAEKLNAYGIS 529 (627)
T ss_pred hhhHHHHHHHHHHHhcCCC
Confidence 77654 44555655554
No 54
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=33.40 E-value=73 Score=27.73 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=31.0
Q ss_pred hhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceE
Q 009112 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV 143 (543)
Q Consensus 105 ~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv 143 (543)
|..+| ...|.+..|+.+.|++|+.++.+-|.+.+++.
T Consensus 38 ~~~~W--~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~ 74 (113)
T PRK04322 38 WLEEW--LNEGQKKVVLKVNSEEELLELKEKAERLGLPT 74 (113)
T ss_pred HHHHH--HHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCE
Confidence 44455 34678999999999999999999999999874
No 55
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=32.88 E-value=59 Score=35.87 Aligned_cols=33 Identities=12% Similarity=0.378 Sum_probs=28.4
Q ss_pred CCCccEEEecCCHHHHHHHHHHhhcCC-ceEEEE
Q 009112 114 RGSSKLLLQPRTTNEVSQILKYCNSRL-LAVVPQ 146 (543)
Q Consensus 114 ~~~p~~vv~P~s~~dV~~il~~a~~~~-~pv~~~ 146 (543)
.|-|-..++|.|.++|.+++++|+++- .|++.+
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 467888999999999999999999874 777774
No 56
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=27.64 E-value=2.4e+02 Score=24.01 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcC
Q 009112 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHG 202 (543)
Q Consensus 123 P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~G 202 (543)
-+++.||..+|+-..+++.|+.++ .+.+- . .+ .+|+++|++++++....|..-.+-...++..-
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~-~~~g~---------~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a~~ 67 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVR-HPRGQ---------S-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNAEE 67 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEE-TT-SS---------E-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT--
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEE-eCCCC---------E-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcCCc
Confidence 368899999999999999999988 32211 1 22 36789999999999999887776666665554
Q ss_pred Ccc
Q 009112 203 FIM 205 (543)
Q Consensus 203 l~l 205 (543)
+.+
T Consensus 68 ~~~ 70 (108)
T PF07317_consen 68 LTF 70 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 57
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=25.99 E-value=45 Score=31.86 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=26.3
Q ss_pred EEEecC-----CHHHHHHHHHHhhcCCceEEE-EcCCCCC
Q 009112 119 LLLQPR-----TTNEVSQILKYCNSRLLAVVP-QGGNTGL 152 (543)
Q Consensus 119 ~vv~P~-----s~~dV~~il~~a~~~~~pv~~-~GgGt~~ 152 (543)
.++.|. ++++|..+++.++...+-+.| +|||||.
T Consensus 89 v~vvmaDLPLl~~~~i~~~~~~~~d~dvviaP~~gGGTn~ 128 (210)
T COG1920 89 VIVVMADLPLLSPEHIERALSAAKDADVVIAPGRGGGTNV 128 (210)
T ss_pred eEEEecccccCCHHHHHHHHHhcCCCcEEEecCCCCceEE
Confidence 455554 579999999999988877777 5778774
No 58
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=25.48 E-value=90 Score=28.43 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=25.8
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEE
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~ 146 (543)
..|+.|.+.+|+..++++|-+.+-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999998877788776
No 59
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.95 E-value=62 Score=33.64 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHhhcCCceEEEE
Q 009112 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 124 ~s~~dV~~il~~a~~~~~pv~~~ 146 (543)
=|.+|+++++++|++++|.|+|-
T Consensus 72 YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999999985
No 60
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.24 E-value=1.2e+02 Score=28.68 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=29.1
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhcCCceE
Q 009112 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV 143 (543)
Q Consensus 112 ~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv 143 (543)
..-|.|..||..++++++.++.+.|++.+++.
T Consensus 120 e~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t 151 (190)
T KOG3282|consen 120 ENCGQAKIVVKAESEEELMELQKDAKKLGLYT 151 (190)
T ss_pred HHcCCceEEEEcCCHHHHHHHHHHHHHcCCcE
Confidence 45789999999999999999999999999775
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=24.18 E-value=1.6e+02 Score=21.80 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=32.0
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+|..+|. .+|.|..+.+...+........++.|.+.+++.+++..+
T Consensus 13 ~~l~~~f~----~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 13 EELRDFFS----QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp HHHHHHHH----TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 35666654 355566666655444455677889999999998887665
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=24.02 E-value=2.5e+02 Score=20.96 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=33.3
Q ss_pred ccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
||..+|. .+|.|.++.+...+.......+++.|.+.+++.+++...
T Consensus 14 ~l~~~f~----~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 14 DLRNFFS----RFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHCT----TSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 5555543 245688888887765556778899999999998877554
No 63
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=23.86 E-value=67 Score=32.88 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhhcCCceEEEE
Q 009112 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 124 ~s~~dV~~il~~a~~~~~pv~~~ 146 (543)
=|.+|+++++++|++++|-|+|-
T Consensus 69 yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEe
Confidence 48899999999999999999984
No 64
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.44 E-value=1.2e+02 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=25.1
Q ss_pred ccEEEecCC------HHHHHHHHHHhhcC------CceEEEEcCCC
Q 009112 117 SKLLLQPRT------TNEVSQILKYCNSR------LLAVVPQGGNT 150 (543)
Q Consensus 117 p~~vv~P~s------~~dV~~il~~a~~~------~~pv~~~GgGt 150 (543)
...+++|.. +++|.+.++.+++. ++=|+.||||+
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 456666654 68899999999864 46667788876
No 65
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=22.27 E-value=41 Score=36.22 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHhcCCCCCCC
Q 009112 512 KTVQLMSSIKKLLDPNGILN 531 (543)
Q Consensus 512 ~~~~~m~~iK~~~DP~gIlN 531 (543)
.+++.+.++|+.+||+|+|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 36789999999999999984
No 66
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.27 E-value=93 Score=26.51 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=28.2
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEEcCC
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGN 149 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgG 149 (543)
..+|++.+..|++.++.+|.+.++||...+.-
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 56778888899999999999999999888764
No 67
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.10 E-value=76 Score=32.51 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHhhcCCceEEEE
Q 009112 123 PRTTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 123 P~s~~dV~~il~~a~~~~~pv~~~ 146 (543)
+=|.+|+++++++|++++|-|+|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 469999999999999999999984
No 68
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=21.63 E-value=6.5e+02 Score=27.13 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCC-Ccee------cCHHH-HHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCC
Q 009112 81 EDVSYFKELLGE-KSVI------QDEDV-LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGN 149 (543)
Q Consensus 81 ~~~~~l~~~~g~-~~v~------~~~~~-l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgG 149 (543)
..++.++..++. +.+. +++++ .....+.+ .........++.|+.+|-..++-+.|+++|+++..|+.|
T Consensus 218 ~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~~l-~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 218 AELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQAL-KKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred HHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHHHH-HhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 345567777775 3222 23333 22222222 344556789999999999999999999999999999887
No 69
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=21.53 E-value=68 Score=33.21 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHhhcCCceEEEE--cCCCC
Q 009112 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (543)
Q Consensus 124 ~s~~dV~~il~~a~~~~~pv~~~--GgGt~ 151 (543)
=|.+|+++++++|++++|.|+|- .=||.
T Consensus 70 yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 70 YTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp BEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred CCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 48899999999999999999884 44554
No 70
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.38 E-value=81 Score=32.54 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHhhcCCceEEEE
Q 009112 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 124 ~s~~dV~~il~~a~~~~~pv~~~ 146 (543)
=|.+|+++++++|++++|.|+|-
T Consensus 65 yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 58999999999999999999985
No 71
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.65 E-value=84 Score=33.03 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhcCCceEEEE
Q 009112 125 TTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 125 s~~dV~~il~~a~~~~~pv~~~ 146 (543)
|.+|+++|+++|++++|.|+|-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999985
No 72
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=20.50 E-value=86 Score=32.85 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHhhcCCceEEEE
Q 009112 125 TTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 125 s~~dV~~il~~a~~~~~pv~~~ 146 (543)
|.+|+++|+++|++++|-|+|-
T Consensus 68 T~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999985
Done!