Query 009112
Match_columns 543
No_of_seqs 345 out of 2580
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 19:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pm9_A Putative oxidoreductase 100.0 4.6E-84 1.6E-88 697.1 46.8 457 77-536 12-476 (476)
2 4bby_A Alkyldihydroxyacetoneph 100.0 1.7E-70 5.8E-75 614.0 46.0 450 77-536 159-658 (658)
3 2uuu_A Alkyldihydroxyacetoneph 100.0 9.9E-70 3.4E-74 597.9 38.3 448 77-536 89-584 (584)
4 1f0x_A DLDH, D-lactate dehydro 100.0 3.2E-68 1.1E-72 582.4 24.9 440 80-541 10-565 (571)
5 1e8g_A Vanillyl-alcohol oxidas 100.0 1E-64 3.6E-69 557.8 37.3 444 81-538 23-549 (560)
6 1wvf_A 4-cresol dehydrogenase 100.0 1.8E-62 6.1E-67 536.3 40.4 446 81-539 19-516 (520)
7 2exr_A Cytokinin dehydrogenase 100.0 3.5E-59 1.2E-63 509.7 14.1 425 78-538 26-522 (524)
8 1w1o_A Cytokinin dehydrogenase 100.0 3.2E-56 1.1E-60 488.4 23.8 440 79-537 31-534 (534)
9 2vfr_A Xylitol oxidase, aldito 100.0 4E-42 1.4E-46 366.4 11.2 381 106-532 10-413 (422)
10 3tsh_A Pollen allergen PHL P 4 100.0 3.6E-39 1.2E-43 350.7 27.0 232 79-317 8-250 (500)
11 4feh_A Oxidoreductase DPRE1; a 100.0 2.3E-37 7.7E-42 333.5 26.2 404 105-531 32-471 (481)
12 2bvf_A 6-hydroxy-D-nicotine ox 100.0 2E-37 7E-42 333.4 24.2 211 98-317 20-234 (459)
13 2ipi_A Aclacinomycin oxidoredu 100.0 2.6E-35 9E-40 321.1 34.1 201 91-294 29-245 (521)
14 3fw9_A Reticuline oxidase; BI- 100.0 9.9E-36 3.4E-40 321.6 24.0 203 106-317 35-242 (495)
15 2wdx_A Putative hexose oxidase 100.0 9.4E-36 3.2E-40 324.6 24.0 204 98-304 38-258 (523)
16 1zr6_A Glucooligosaccharide ox 100.0 1.2E-34 4.3E-39 314.7 31.7 224 83-315 6-235 (503)
17 2y3s_A TAML; oxidoreductase; H 100.0 5.1E-34 1.7E-38 311.3 35.4 188 97-289 39-232 (530)
18 3pop_A GILR oxidase; FAD bindi 100.0 2.2E-34 7.7E-39 311.6 30.8 195 90-289 8-208 (501)
19 3vte_A Tetrahydrocannabinolic 100.0 1.4E-35 4.9E-40 321.2 21.4 206 106-318 43-251 (518)
20 3rja_A Carbohydrate oxidase; p 100.0 7E-34 2.4E-38 306.3 21.5 218 93-317 13-234 (473)
21 2i0k_A Oxidoreductase; MIX alp 100.0 1.2E-31 4E-36 294.7 24.5 199 103-312 22-240 (561)
22 1hsk_A UDP-N-acetylenolpyruvoy 100.0 1.1E-32 3.7E-37 283.3 12.0 193 78-294 14-212 (326)
23 3js8_A Cholesterol oxidase; ch 100.0 9.8E-30 3.3E-34 274.5 16.4 194 106-311 19-235 (540)
24 3tx1_A UDP-N-acetylenolpyruvoy 100.0 3.5E-30 1.2E-34 263.3 9.9 197 77-294 19-217 (322)
25 3i99_A UDP-N-acetylenolpyruvoy 99.9 7.9E-26 2.7E-30 233.4 14.3 173 100-294 17-199 (357)
26 1uxy_A MURB, uridine diphospho 99.9 5.8E-25 2E-29 226.2 19.1 177 102-294 3-183 (340)
27 2gqt_A UDP-N-acetylenolpyruvyl 99.9 2.4E-24 8.1E-29 214.3 8.7 161 101-293 10-173 (268)
28 2yvs_A Glycolate oxidase subun 99.9 2E-23 6.8E-28 201.9 9.5 127 175-306 2-128 (219)
29 1ffv_C CUTM, flavoprotein of c 98.6 1.6E-07 5.3E-12 94.3 9.9 152 117-292 5-177 (287)
30 2w3s_A Xanthine dehydrogenase; 97.7 8.5E-06 2.9E-10 86.8 2.4 154 115-291 175-345 (462)
31 1n62_C Carbon monoxide dehydro 97.6 6.7E-05 2.3E-09 75.1 7.2 150 117-291 5-176 (288)
32 3nvz_B Xanthine dehydrogenase/ 97.5 0.00019 6.5E-09 72.4 8.0 130 112-251 5-157 (305)
33 1t3q_C Quinoline 2-oxidoreduct 96.9 0.00063 2.1E-08 68.0 4.8 122 117-251 5-143 (288)
34 3hrd_C Nicotinate dehydrogenas 96.1 0.0014 4.8E-08 65.7 1.3 105 118-225 4-119 (296)
35 1rm6_B 4-hydroxybenzoyl-COA re 94.1 0.014 4.7E-07 59.1 1.4 98 118-223 7-118 (324)
36 3zyv_A AOH1; oxidoreductase, m 81.0 0.54 1.9E-05 56.3 2.1 106 115-224 238-362 (1335)
37 3rja_A Carbohydrate oxidase; p 79.9 0.65 2.2E-05 49.3 2.0 34 503-537 437-470 (473)
38 3unc_A Xanthine dehydrogenase/ 77.6 3.2 0.00011 49.5 7.2 109 113-225 229-356 (1332)
39 3js8_A Cholesterol oxidase; ch 49.7 46 0.0016 35.6 8.8 56 476-531 455-531 (540)
40 1xty_A PTH, peptidyl-tRNA hydr 38.0 58 0.002 27.4 5.9 45 103-149 43-88 (120)
41 2lnd_A De novo designed protei 37.6 66 0.0023 25.0 5.5 35 118-152 29-63 (112)
42 1rzw_A Protein AF2095(GR4); be 32.8 56 0.0019 27.7 4.9 43 106-150 40-83 (123)
43 1wn2_A Peptidyl-tRNA hydrolase 29.9 61 0.0021 27.3 4.7 42 106-149 47-89 (121)
44 1aie_A P53; oligomer, DNA; 1.5 26.4 28 0.00097 22.1 1.4 19 507-525 6-24 (31)
45 2dnh_A Bruno-like 5, RNA bindi 24.8 1.2E+02 0.0042 23.6 5.6 47 266-316 30-76 (105)
46 1yht_A DSPB; beta barrel, hydr 24.2 42 0.0014 33.9 3.2 23 124-146 92-114 (367)
47 2do4_A Squamous cell carcinoma 23.8 1.3E+02 0.0045 23.2 5.6 47 266-316 32-78 (100)
48 3ulh_A THO complex subunit 4; 23.7 1.2E+02 0.0042 23.7 5.5 47 266-316 44-90 (107)
49 2ywk_A Putative RNA-binding pr 23.5 1.1E+02 0.0038 23.3 5.0 47 266-316 31-77 (95)
50 1rlk_A Hypothetical protein TA 21.6 1.1E+02 0.0036 25.5 4.7 39 112-150 47-86 (117)
51 3s8s_A Histone-lysine N-methyl 20.9 1.6E+02 0.0053 23.7 5.6 47 266-316 21-68 (110)
52 2do0_A HnRNP M, heterogeneous 20.6 1.6E+02 0.0054 23.3 5.6 47 266-316 30-76 (114)
53 2r2z_A Hemolysin; APC85144, en 20.6 96 0.0033 24.3 4.0 41 180-227 15-55 (93)
54 2zv3_A PTH, peptidyl-tRNA hydr 20.5 1.1E+02 0.0037 25.4 4.4 37 113-149 46-83 (115)
55 3llb_A Uncharacterized protein 20.3 1.1E+02 0.0039 23.4 4.3 41 180-227 8-48 (83)
56 2yl5_A Beta-N-acetylhexosamini 20.2 59 0.002 33.8 3.3 28 124-151 92-121 (442)
No 1
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=100.00 E-value=4.6e-84 Score=697.05 Aligned_cols=457 Identities=39% Similarity=0.647 Sum_probs=415.4
Q ss_pred CCCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc
Q 009112 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (543)
Q Consensus 77 ~~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~ 156 (543)
.++++++++|++++|+++|+++++.+..|++||+..+.+.|.+|++|+|++||+++|++|+++++|++|+|||||+.|++
T Consensus 12 ~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~~~g~~ 91 (476)
T 3pm9_A 12 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQ 91 (476)
T ss_dssp CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSSCCSSSTT
T ss_pred cCCHHHHHHHHHhcCCCcEecCHHHHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCc
Confidence 47789999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCC
Q 009112 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236 (543)
Q Consensus 157 ~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~ 236 (543)
++..+|++|||++||+|+++|+++.+++||||++|.+|+++|.++|+.+|++|++...+||||++++|+||.++.+||.+
T Consensus 92 ~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~~yG~~ 171 (476)
T 3pm9_A 92 TPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA 171 (476)
T ss_dssp CCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHHHHCCH
T ss_pred cCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCcccccCcH
Confidence 98777999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 237 ~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
+|+|++++||++||++++++....|+++||||+++++||+|+|||||+++||++|.|+.....++.|++++++.+++.++
T Consensus 172 ~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 172 RDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp HHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999998888889999999999999998
Q ss_pred HHHhccccceeeecchhHHHHHHHhhcCCCCCCCCCCCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCH
Q 009112 317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDI 396 (543)
Q Consensus 317 ~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 396 (543)
+...+..|+++|+||+.+++.+.++. +...|++.. .++++++|+.|.+ +..+++++.+++.+.+.+...+..++.++
T Consensus 252 ~~~~g~~p~a~El~d~~~~~~~~~~~-~~~~~~~~~-~~~~llve~~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~a~~~ 328 (476)
T 3pm9_A 252 QGEAAGNLTSFELIAETPLDFSVRHA-NNRDPLEAR-YPWYVLIELSSPR-DDARAALESILERGFEDGIVVDAAIANSV 328 (476)
T ss_dssp HHHHGGGEEEEEEEEHHHHHHHHHHT-TCCCCSSSC-CSEEEEEEEEESS-SCHHHHHHHHHHHHHHTTCCCEEEECCSH
T ss_pred HHhcCCCceEEEecCHHHHHHHHhcc-CCCCCCCcc-CCeEEEEEEccCc-HHHHHHHHHHHHHHHhcCCCcceEEeCCH
Confidence 76667789999999999999887763 555555432 4689999999887 44566777788877777766677888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCceeEEeeecchhhHHHHHHHHHHHHhhc--C-cEEEeeecCCCceEEEeccCCC-ChH-
Q 009112 397 NQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGET--A-KVIGYGHLGDGNLHLNISAPRY-DDM- 471 (543)
Q Consensus 397 ~~~~~~w~~R~~~~~~~~~~g~~~~~D~~vp~~~l~~~~~~~~~~~~~~--g-~~~~~gH~gdGnlH~~i~~~~~-~~~- 471 (543)
++.+++|+.|+.+.++....+..+.+|++||+++++++++.+++.++++ + ....|||+||||+|+++..+.. +++
T Consensus 329 ~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~~~gH~gdGnlH~~i~~~~~~~~~~ 408 (476)
T 3pm9_A 329 QQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAE 408 (476)
T ss_dssp HHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTEEEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCceEEEEecCCcCChHH
Confidence 9999999999999888777777788999999999999999999999988 5 5678999999999999987542 222
Q ss_pred ---HHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCccc
Q 009112 472 ---IFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVL 536 (543)
Q Consensus 472 ---~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk~~ 536 (543)
..+++.+.+++.+.++||++|+|||+|..|++|+..++|++.+++|++||++|||+|||||||+|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~gGsis~EHGiG~~k~~~l~~~~~~~~~~~m~~iK~~~DP~~ilNPGki~ 476 (476)
T 3pm9_A 409 FLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 476 (476)
T ss_dssp HHTTHHHHHHHHHHHHHHTTCBSCSSSCCTTTTHHHHHHHSCHHHHHHHHHHHHHHCTTSCBSTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcccCchhHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCcC
Confidence 13456678899999999999999999999999999999999999999999999999999999986
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=1.7e-70 Score=613.97 Aligned_cols=450 Identities=20% Similarity=0.248 Sum_probs=355.4
Q ss_pred CCCHHHHHHHHHhhCCCceecCHHHHHHhhh-----h----hhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEc
Q 009112 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANE-----D----WMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG 147 (543)
Q Consensus 77 ~~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~-----d----~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~G 147 (543)
.++++++++|+++++. +.++.++...+++ | |...|...|++||+|+|++||+++|++|+++++||+|+|
T Consensus 159 ~~~~~~~~~l~~~~~~--~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVvprG 236 (658)
T 4bby_A 159 IVNEDFLHELKKTNIS--YSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIG 236 (658)
T ss_dssp CCCHHHHHHHHHHTCE--EECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCHHHHHHHHHhccc--ccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678999999999875 4566666544443 2 445678889999999999999999999999999999999
Q ss_pred CCCCCCCCcccC----CCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccC
Q 009112 148 GNTGLVGGSVPV----FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (543)
Q Consensus 148 gGt~~~g~~~~~----~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~ 223 (543)
||||+.|++++. .++|+|||++||+|++||+++.+++|||||++.+|+++|+++|++||++|++.+.|||||+|++
T Consensus 237 gGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~~aTIGG~iAt 316 (658)
T 4bby_A 237 GGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316 (658)
T ss_dssp SCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTTTCBHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCccccEEeehhhc
Confidence 999999887753 3469999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEe
Q 009112 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (543)
Q Consensus 224 na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~ 303 (543)
|++|.++.+||.++|+|+++|||++||++++.+ ...|+++||||+++|+||||||||||+++||++|.|+.....++.|
T Consensus 317 na~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~-~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f 395 (658)
T 4bby_A 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSC-QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAF 395 (658)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEEECSC-CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCCCCccCcCCHHHheeeEEEEeCCCcccccc-cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCcccccccccc
Confidence 999999999999999999999999999988755 4568899999999999999999999999999999999998899999
Q ss_pred CCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcCCCCCCC---CC--------------CCceEEEEEecCCC
Q 009112 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFS---SS--------------MHNFYVLIETTGSE 366 (543)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~~~~p~~---~~--------------~~~~~llie~~g~~ 366 (543)
++++++.+++.++.+ .+..|+++|+||+..++....+.+....+.. +. .......+.+.+..
T Consensus 396 ~d~~~a~~av~~i~~-~~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~ 474 (658)
T 4bby_A 396 PNFEQGVACLREIAK-QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR 474 (658)
T ss_dssp SSHHHHHHHHHHHHH-TTCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECH
T ss_pred CCchhhhhhHHHHHH-cCCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccH
Confidence 999999999988865 3567899999999888877654322211110 00 01112223333332
Q ss_pred hhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHH--H-HhcC-ceeEEeeecchhhHHHHHHHHHHHH
Q 009112 367 ESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEA--L-MKAG-AVYKYDLSLPVEKMYDLVEKMRQRL 442 (543)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~--~-~~~g-~~~~~D~~vp~~~l~~~~~~~~~~~ 442 (543)
+...+..+.+.+.+...+. +...+...+.+|.+|...... . ...+ ....+|+++|++++++++..+.+.+
T Consensus 475 -~~v~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l 548 (658)
T 4bby_A 475 -EKVLQHEKQVYDIAAKFGG-----LAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERI 548 (658)
T ss_dssp -HHHHHHHHHHHHHHHTTTC-----EECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhCc-----chhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHH
Confidence 2233333444444443332 233444555556555543321 1 1222 2346899999999999998888776
Q ss_pred hhc----C------cEEEeeecCCCceEE--EeccCCC---C-hHHHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhh
Q 009112 443 GET----A------KVIGYGHLGDGNLHL--NISAPRY---D-DMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIF 506 (543)
Q Consensus 443 ~~~----g------~~~~~gH~gdGnlH~--~i~~~~~---~-~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~ 506 (543)
.+. + ....++|++|||.|+ ++..+.. + .+.+++++..+++.+.++||+||+|||||..|++|+.
T Consensus 549 ~~~~~~~g~~~~~~~~~~~~h~~dg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~GGsiS~EHGIG~~k~~~l~ 628 (658)
T 4bby_A 549 RRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLK 628 (658)
T ss_dssp HHHHHHTTCSSCCEEEEEEEEECSSEEEEEEEEEEECTTCSCHHHHHHHHHHHHHHHHHHTTCCSCSSSCCTTTSGGGHH
T ss_pred HHHHHhcCccccccceEEEEEEeccCceEEEEecCCcCCchhHHHHHHHHHHHHHHHHHHcCCeEEEcccchHHHHHHHH
Confidence 554 1 234689999987554 4433221 1 1345667778899999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCCCCCccc
Q 009112 507 YSKSPKTVQLMSSIKKLLDPNGILNPYKVL 536 (543)
Q Consensus 507 ~~~g~~~~~~m~~iK~~~DP~gIlNPGk~~ 536 (543)
+++|++.+++|++||++|||+|||||||++
T Consensus 629 ~~~g~~~l~lmr~IK~a~DP~gILNPGKll 658 (658)
T 4bby_A 629 ESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658 (658)
T ss_dssp HHHCHHHHHHHHHHHHHHSTTCSSCSCCCC
T ss_pred HhcCHHHHHHHHHHHHHhCcccCCCCCCCC
Confidence 999999999999999999999999999986
No 3
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=9.9e-70 Score=597.93 Aligned_cols=448 Identities=17% Similarity=0.250 Sum_probs=345.3
Q ss_pred CCCHHHHHHHHHhh-CCCceecCHHHHHHhhh-----hhhc----ccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEE
Q 009112 77 TLNSEDVSYFKELL-GEKSVIQDEDVLLAANE-----DWMR----KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 77 ~~~~~~~~~l~~~~-g~~~v~~~~~~l~~~~~-----d~~~----~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~ 146 (543)
.++++++++|++++ | ++|++++..+..|++ ||+. .+...|.+|++|+|++||+++|++|+++++||+|+
T Consensus 89 ~~~~~~~~~L~~~l~g-~~v~~~~~~~~~y~~d~~~~~~~~~~~g~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~pv~~~ 167 (584)
T 2uuu_A 89 KQYPEFVRELKAFFLP-DQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPM 167 (584)
T ss_dssp CCCHHHHHHHHTTSCG-GGEECSHHHHHHTTCCSSHHHHHHHHTTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCHHHHHHHHhhcCC-CeEEECHHHHHHhccCCchhhhhhhccCccCCCCCEEEeCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 35678899999999 8 889999988877875 3322 24568999999999999999999999999999999
Q ss_pred cCCCCCCCCcccC---CCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccC
Q 009112 147 GGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (543)
Q Consensus 147 GgGt~~~g~~~~~---~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~ 223 (543)
|||||+.|++++. +++|+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++.+.+||||++++
T Consensus 168 GgGts~~gg~~~~~~~~g~vvidl~~mn~I~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~ 247 (584)
T 2uuu_A 168 GGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLAT 247 (584)
T ss_dssp SSCCCSSCTTSCCCCSSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHH
T ss_pred eCCCCCCCCCcccCCCCCEEEEECCCCCccEEEcCCCCEEEECCCCcHHHHHHHHHHcCCeeCcCCCccCCeeEeeeccC
Confidence 9999999998875 4679999999999999999999999999999999999999999999999988888999999999
Q ss_pred CcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEe
Q 009112 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (543)
Q Consensus 224 na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~ 303 (543)
|++|.++.+||.++|+|++++||++||++++. ...+++.||||+++++||+|+|||||+++||++|.|+......+.|
T Consensus 248 na~G~~~~~yG~~~d~V~~levVl~dG~i~~~--~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f 325 (584)
T 2uuu_A 248 CSSGHQSDKYGDIEDMAVSFRTVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLF 325 (584)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEECCC---------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCcccccCcCcHHHheeeEEEEeCCCCEEEC--CccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEc
Confidence 99999999999999999999999999997652 2336779999999999999999999999999999999888888899
Q ss_pred CCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHhhcC--CC---------------CCCCCCCCceEEEEEecCCC
Q 009112 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEG--VR---------------NPFSSSMHNFYVLIETTGSE 366 (543)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~~~--~~---------------~p~~~~~~~~~llie~~g~~ 366 (543)
++++++.+++.++.+ .+..|+++|+||+.++.+...+... .. .+++.. ..+++++|+.|..
T Consensus 326 ~~~~~a~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~llve~~g~~ 403 (584)
T 2uuu_A 326 PTFAHAVSALQQIRS-SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFK-NVCLSIIGFEGPK 403 (584)
T ss_dssp SSHHHHHHHHHHHHH-HTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTT-TCEEEEEEEEECH
T ss_pred CCHHHHHHHHHHHHh-cCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCC-ccEEEEEEEecCh
Confidence 999999999988865 3667899999998876643332110 00 122222 4578999999875
Q ss_pred hhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHHHHh----cCc-eeEEeeecchhhHHHHHHHHHHH
Q 009112 367 ESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMK----AGA-VYKYDLSLPVEKMYDLVEKMRQR 441 (543)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~~~----~g~-~~~~D~~vp~~~l~~~~~~~~~~ 441 (543)
+.++++++.+.+.+.+.+.... . ++..++|+.|+...+++.. .+. ...+|++||+++++++++.+++.
T Consensus 404 -~~v~~~~~~~~~~~~~~g~~~~---~---~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~ 476 (584)
T 2uuu_A 404 -KVVDFHRTSVFDILSKNAAFGL---G---SAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQT 476 (584)
T ss_dssp -HHHHHHHHHHHHHHHTTTCEEE---E---EESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCccc---h---HHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHH
Confidence 4556667777777766664322 1 1456799988876655443 232 35689999999999999998887
Q ss_pred ----HhhcC-cEEEe---eecCCC--ceEEEeccC---CCChHHHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhcc
Q 009112 442 ----LGETA-KVIGY---GHLGDG--NLHLNISAP---RYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYS 508 (543)
Q Consensus 442 ----~~~~g-~~~~~---gH~gdG--nlH~~i~~~---~~~~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~ 508 (543)
+.+++ ....| ||+||+ ++|+++..+ ..+.+.++++.+.+++.+.++||++|+|||+|+.|++|+..+
T Consensus 477 l~~~~~~~g~~~~~~~h~gH~gd~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gGsiS~EHGiG~~k~~~l~~~ 556 (584)
T 2uuu_A 477 FVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDMAQYIEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRY 556 (584)
T ss_dssp HHHHHHTTTCCEEEEEEEEEEETTEEEEEEEEEEECCTTCCTHHHHHHHHHHHHHHHHTTCCCC----------------
T ss_pred HHhHHHhcCCeeEEEEEEEeecCCCcEEEEEeccCCCChhhHHHHHHHHHHHHHHHHHcCCcEEecccCCcccHHHHHHh
Confidence 55555 44444 455665 345545432 223355667888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHhcCCCCCCCCCccc
Q 009112 509 KSPKTVQLMSSIKKLLDPNGILNPYKVL 536 (543)
Q Consensus 509 ~g~~~~~~m~~iK~~~DP~gIlNPGk~~ 536 (543)
+|++.+++|++||++|||+|||||||+|
T Consensus 557 ~g~~~~~lmr~iK~a~DP~gIlNPGki~ 584 (584)
T 2uuu_A 557 ATRGWINVYRSLKETIDPKDICNPRKLI 584 (584)
T ss_dssp --CTHHHHHHHHHHHHCTTCCBSCCCC-
T ss_pred cCHHHHHHHHHHHHHcCCCcCCCCCCCC
Confidence 9999999999999999999999999986
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=100.00 E-value=3.2e-68 Score=582.39 Aligned_cols=440 Identities=18% Similarity=0.218 Sum_probs=360.0
Q ss_pred HHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccC
Q 009112 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (543)
Q Consensus 80 ~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~ 159 (543)
.+++++|++++|+++|.+++..+..|++||+ .+.+.|.+|++|+|++||+++|++|+++++||+|+|||||+.|++++.
T Consensus 10 ~~~~~~L~~~~g~~~v~~~~~~~~~y~~d~~-~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~G~~~~~ 88 (571)
T 1f0x_A 10 KAFLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPN 88 (571)
T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHHBCSS-SCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCC
T ss_pred HHHHHHHHHhcCCCeEEcCHHHHHHHhcccc-ccCCCccEEEeeCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCccCC
Confidence 4678999999998899999989999999997 678999999999999999999999999999999999999999999886
Q ss_pred CC-----cEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCC-CcceecccccCCcCCCCcccc
Q 009112 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (543)
Q Consensus 160 ~~-----gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~-~~~tvGG~va~na~G~~~~~y 233 (543)
.+ +|+|||++||+|+++|+ +.+|+||||+++.+|+++|.++|+.+|++||+. ..+||||+|++|+||..+.+|
T Consensus 89 ~~~~~r~gvvIdl~rmn~I~~id~-~~~v~v~aGv~l~~L~~~l~~~Gl~~p~~~g~s~~~~tvGG~ia~nagG~~~~~y 167 (571)
T 1f0x_A 89 GNDYDRDVVIISTLRLDKLHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRG 167 (571)
T ss_dssp BSCCSSCEEEEECTTCCCEEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHHHHTTCCCSCTTSC
T ss_pred CcCCcCceEEEECcccCCceeECC-CCeEEEcCCcCHHHHHHHHHhcCccCCcCCCccCCCceecccccCCCCcccccCC
Confidence 53 89999999999989995 578999999999999999999999998888753 356999999999999999999
Q ss_pred CCCCc----------------cEEEEEEEecCCcEEEccCCcc------------cCCCCC-----------------cc
Q 009112 234 GSLHG----------------NVLGLEAVLANGDVIDMLGTLR------------KDNTGY-----------------DL 268 (543)
Q Consensus 234 G~~~d----------------~V~~~evV~~dG~i~~~~~~~~------------k~~~g~-----------------dL 268 (543)
|.++| +|++++||++||++++++.... |+++|| ||
T Consensus 168 G~~~d~~~~~~~~~~~~l~~~~vl~levVl~dG~i~~~~~~~~~~~~~~~~~~~~k~~~Gy~~~~~~~d~~~p~~~~~Dl 247 (571)
T 1f0x_A 168 PAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADP 247 (571)
T ss_dssp SSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTHHHHHHCTTCSSCSCCTTCG
T ss_pred CchhhhhhhheeccCCceEEEEeeeEEEEcCCCcEEEecCccccccchhhhcccccccCCcccccccccccccccccccH
Confidence 99999 9999999999999998875432 678899 99
Q ss_pred chhh--hccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHHHHHHh-----
Q 009112 269 KHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTY----- 341 (543)
Q Consensus 269 ~~~~--~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~----- 341 (543)
+++| +||+|+||| |+++||++|.|+.....++.|++++++.+++.++....+..|+++|+||+..++++.++
T Consensus 248 ~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~ 326 (571)
T 1f0x_A 248 DRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTF 326 (571)
T ss_dssp GGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEEEEEEHHHHHHHC-------
T ss_pred HHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHhccccc
Confidence 9999 999999999 99999999999888888889999999999999887556778999999999988877554
Q ss_pred -----hcCCCC-----------------CC-C--------------------------CCCCceEEEEEecCCChhhHHH
Q 009112 342 -----LEGVRN-----------------PF-S--------------------------SSMHNFYVLIETTGSEESYDRE 372 (543)
Q Consensus 342 -----~~~~~~-----------------p~-~--------------------------~~~~~~~llie~~g~~~~~~~~ 372 (543)
...... |+ + ....++++++|+.|.+.+...+
T Consensus 327 ~~i~~~~~~~~p~~~~~k~~~~~~~~~~p~l~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~llve~~g~~~~~~~~ 406 (571)
T 1f0x_A 327 LMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKS 406 (571)
T ss_dssp --------------------------------------------------CCHHHHHHHHHCSEEEEEEECTTHHHHHHH
T ss_pred ccccccCcccccchhcccchhhhhhcccccccccchhhhhhhhhhccccccchhhhcccccCceEEEEEEecCcHHHHHH
Confidence 111111 11 0 0013578999999987766666
Q ss_pred HHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHHH---H-----hcCceeEEeeecchhhHHHHHHHHHHHHhh
Q 009112 373 KLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEAL---M-----KAGAVYKYDLSLPVEKMYDLVEKMRQRLGE 444 (543)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~---~-----~~g~~~~~D~~vp~~~l~~~~~~~~~~~~~ 444 (543)
+++.+++.. .+. .+....++.+..|..|+....++ . ..+..+.+|++||+++++++ +.+++.+.+
T Consensus 407 ~l~~~~~~~--~g~----~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g~~~~~Dvavp~~~l~~~-~~~~~~l~~ 479 (571)
T 1f0x_A 407 WLVDYFKQA--EGD----FFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWY-EHLPPEIDS 479 (571)
T ss_dssp HHHHHHHHS--SCE----EEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEEEEEEEEEECCTTCSCCS-CCCCHHHHT
T ss_pred HHHHHHHHc--CCC----eeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcCCceEEEEEecHHHhHHH-HHHHHHHHh
Confidence 666665543 221 22225566666777666554322 1 12235789999999999999 999988887
Q ss_pred cC-cEEEeeecCCCceEEEeccCCCChHHHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHh
Q 009112 445 TA-KVIGYGHLGDGNLHLNISAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKL 523 (543)
Q Consensus 445 ~g-~~~~~gH~gdGnlH~~i~~~~~~~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~ 523 (543)
.+ ....|||+||||+|+++..+... + .+++.+.+.+++.++||++|+|||+|.. | +.+.. |++||++
T Consensus 480 ~~~~~~~~GH~g~g~~H~~~~~~~~~-~-~~~i~~~~~~~v~~~GGsisaEHGvG~~---~-----~~~~~--m~~iK~~ 547 (571)
T 1f0x_A 480 QLVHKLYYGHFMCYVFHQDYIVKKGV-D-VHALKEQMLELLQQRGAQYPAEHNVGHL---Y-----KAPET--LQKFYRE 547 (571)
T ss_dssp TEEEEEEEEETTTTEEEEEEEEETTC-C-HHHHHHHHHHHHHHTTCBSCSSSCCTTT---S-----CCCHH--HHHHHHH
T ss_pred hCccceeEEEEcCCceEEeeecCCch-h-HHHHHHHHHHHHHHcCCeEEeeccCCcc---c-----CCHHH--HHHHHHH
Confidence 65 45679999999999998864321 1 4567888999999999999999999986 2 21122 9999999
Q ss_pred cCCCCCCCCCcccCCCCC
Q 009112 524 LDPNGILNPYKVLPHSLS 541 (543)
Q Consensus 524 ~DP~gIlNPGk~~~~~~~ 541 (543)
|||+|||||||++.+...
T Consensus 548 ~DP~~ilNPGk~~t~~~~ 565 (571)
T 1f0x_A 548 NDPTNSMNPGIGKTSKRK 565 (571)
T ss_dssp HCTTCCBSTTTTTCCCSS
T ss_pred hCCCCCCCCCcCcCCccc
Confidence 999999999999976643
No 5
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=100.00 E-value=1e-64 Score=557.77 Aligned_cols=444 Identities=18% Similarity=0.194 Sum_probs=351.1
Q ss_pred HHHHHHHHhhCCCceecCHHHHHH----hhhh------hhc--ccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcC
Q 009112 81 EDVSYFKELLGEKSVIQDEDVLLA----ANED------WMR--KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGG 148 (543)
Q Consensus 81 ~~~~~l~~~~g~~~v~~~~~~l~~----~~~d------~~~--~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~Gg 148 (543)
+++++|++++|+++|.+++..+.. |++| |+. .+.+.|.+|++|+|++||+++|++|+++++||+|+|+
T Consensus 23 ~~~~~L~~~~g~~~v~~d~~~~~~~~~~y~~d~~~~d~~~~~~~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~pv~~~g~ 102 (560)
T 1e8g_A 23 EFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISI 102 (560)
T ss_dssp HHHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCSCTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHhhCcccEecCHHHhhhhhhhhccccccccccccccccccCCcEEEeCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 467889999999999999999988 8877 554 4788999999999999999999999999999999999
Q ss_pred CCCCC-CCccc-CCCcEEEEe-CCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCc--cccCCCCCCcceecccccC
Q 009112 149 NTGLV-GGSVP-VFDEVIINM-GSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI--MPLDLGAKGSCQIGGNVST 223 (543)
Q Consensus 149 Gt~~~-g~~~~-~~~gvvIdl-~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~--lp~~~g~~~~~tvGG~va~ 223 (543)
|||+. |++.| ..+||+||| ++||+|+++|+++.+++||||+++.+|+++|.++|+. +|++|++.+.+||||++++
T Consensus 103 Gt~~~~gg~~p~~~~gvvidl~~~mn~il~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~tigG~~~~ 182 (560)
T 1e8g_A 103 GRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE 182 (560)
T ss_dssp CCCTTTTTTCCSSTTCEEEECTTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHT
T ss_pred CCcCCcCCCCCCcCCEEEEEchHhcCCeEEEcCCCCEEEEeCCCCHHHHHHHHHHcCCccccCCCCCCCCccchhhhccC
Confidence 99997 87776 468999999 9999999999999999999999999999999999999 9888888778999999999
Q ss_pred CcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccC-------------------------CCCCccchhhhccCCC
Q 009112 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD-------------------------NTGYDLKHLFIGSEGS 278 (543)
Q Consensus 224 na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~-------------------------~~g~dL~~~~~Gs~G~ 278 (543)
|++|.. +||.++|+|++++||++||++++++....++ ..||||.++|. +|+
T Consensus 183 ~g~g~~--~yG~~~d~v~~l~vVl~dG~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~Gy~l~~L~~--~Gt 258 (560)
T 1e8g_A 183 RGVGYT--PYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFS--QSN 258 (560)
T ss_dssp TCBCSS--TTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSSCCCGGGGS--SSS
T ss_pred CCCCcc--cceeHHHheeeeEEEeCCCCEEEecCcccCcccccccccchhhhhhhhcccccccccCCcchhcccc--cCc
Confidence 999864 8999999999999999999999988654444 35889999986 579
Q ss_pred eEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHHHH--HhccccceeeecchhHHHHHH-----HhhcCCCCCCCC
Q 009112 279 LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR--KLGEILSAFEFLDNQSMDLVL-----TYLEGVRNPFSS 351 (543)
Q Consensus 279 lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~e~ld~~~~~~~~-----~~~~~~~~p~~~ 351 (543)
|||||+++||++|.|+.....++.|++++++.+++..++. ..+..|+++|+||... ..+. .+. ....+++.
T Consensus 259 lGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~p~~~el~d~~~-~~~~l~~~~~~~-~~~~~~p~ 336 (560)
T 1e8g_A 259 MGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILL-DAAVLGDKRSYS-SRTEPLSD 336 (560)
T ss_dssp SEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHH-HHHHHCCGGGTC-CCSSCCCH
T ss_pred EEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHcCCCcceeEEechHH-Hhhhhhhhhhhc-cCCCCCCH
Confidence 9999999999999999888888899999998777654432 1255789999999874 2221 111 10011221
Q ss_pred C----------CCceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHH---HHHHhc--
Q 009112 352 S----------MHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIA---EALMKA-- 416 (543)
Q Consensus 352 ~----------~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~---~~~~~~-- 416 (543)
. ...+++++|+.|.. +..+++++.+.+.+.+.+. ....++.+.++.+.+|. |+.+. +++...
T Consensus 337 ~~~~~l~~~~~~~~~~l~~e~~g~~-~~v~~~~~~i~~i~~~~~~-~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~ 413 (560)
T 1e8g_A 337 EELDKIAKQLNLGRWNFYGALYGPE-PIRRVLWETIKDAFSAIPG-VKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKW 413 (560)
T ss_dssp HHHHHHHHHHTCCSEEEEEEEESCH-HHHHHHHHHHHHHHTTSTT-CEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGG
T ss_pred HHHHHHHhhcCCCceEEEEEEeCCH-HHHHHHHHHHHHHHHhCCC-ceeeccccchhhhhHHH-HHhhcccCchhhhhcc
Confidence 0 02468999999954 4455556655655555443 23334445555567886 87764 222222
Q ss_pred ------CceeEEeeecch--hhHHHHHHHHHHHHhhcC-cEEEeeecCCCceEEEec--cCCCChHHHHHHHHHHHHHHH
Q 009112 417 ------GAVYKYDLSLPV--EKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNIS--APRYDDMIFAQIEPYVYEWTS 485 (543)
Q Consensus 417 ------g~~~~~D~~vp~--~~l~~~~~~~~~~~~~~g-~~~~~gH~gdGnlH~~i~--~~~~~~~~~~~~~~~~~~~~~ 485 (543)
+..+.+|+++|+ ++++++++.+++.+.+++ ....+||+||||+|+++. .+..+++..+++++++.+++.
T Consensus 414 ~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~~~~~~~~g~~~~~~gH~gdGnlH~~i~~~~~~~~~~~~~~~~~~~~~l~~ 493 (560)
T 1e8g_A 414 IDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLID 493 (560)
T ss_dssp GGGSTTEEEEEECBEECSSHHHHHHHHHHHHHHHHHHTCCCCEEEEECSSCEEEEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEeeecCCCHHHHHHHHHHHHHHHHHcCCceEEEEEecCCeEEEEecccCCCCCHHHHHHHHHHHHHHHH
Confidence 234568999999 999999999999998887 567899999999999983 444455556666666666655
Q ss_pred hcCCeEEeeccCCchhhh--hh---hccC---CHHHHHHHHHHhHhcCCCCCCCCCcccCC
Q 009112 486 EHRGSISAEHGLGLMKAN--KI---FYSK---SPKTVQLMSSIKKLLDPNGILNPYKVLPH 538 (543)
Q Consensus 486 ~~gGsis~eHGiG~~k~~--~l---~~~~---g~~~~~~m~~iK~~~DP~gIlNPGk~~~~ 538 (543)
.. +|||+|..|++ |+ ..++ |++.+++|++||++|||+|||||||+++.
T Consensus 494 ~~-----~eHGiG~~k~~~~~l~~~~~~~~~~g~~~~~lm~~iK~~~DP~gILNPGk~~~~ 549 (560)
T 1e8g_A 494 DC-----AANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVW 549 (560)
T ss_dssp HH-----HHTTCCBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHHHHCTTCCBCTTGGGCC
T ss_pred HH-----HHcCCcccccchhHHHHHHHHhccCCHHHHHHHHHHHHHcCccCCCCCCccccC
Confidence 43 59999999998 99 8889 88899999999999999999999999963
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=100.00 E-value=1.8e-62 Score=536.29 Aligned_cols=446 Identities=18% Similarity=0.191 Sum_probs=348.4
Q ss_pred HHHHHHHHhhCCCceecCHHHHHHhhhhhhcc--cCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCC-CCcc
Q 009112 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRK--YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-GGSV 157 (543)
Q Consensus 81 ~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~--~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~-g~~~ 157 (543)
+++++|++++|++.|.+++..+..|++||+.. +.+.|.+|++|+|++||+++|++|+++++||+|+|+|||+. |++.
T Consensus 19 ~~~~~L~~~l~~~~v~~~~~~~~~y~~d~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~pv~~~g~G~~~~~g~~~ 98 (520)
T 1wvf_A 19 KAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAA 98 (520)
T ss_dssp HHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTS
T ss_pred HHHHHHHHhcCCCeEecCcHHHHHHhcccccccccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCC
Confidence 46788999999889999999999999998765 78899999999999999999999999999999999999997 7766
Q ss_pred c-CCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccC-CCCCCcceecccccCCcCCCCccccCC
Q 009112 158 P-VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLD-LGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (543)
Q Consensus 158 ~-~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~-~g~~~~~tvGG~va~na~G~~~~~yG~ 235 (543)
+ ..+||+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++ +++.+.+||||++++|++|.. +||.
T Consensus 99 ~~~~~gvvidl~~m~~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~igG~~~~~g~g~~--~yG~ 176 (520)
T 1wvf_A 99 PVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYT--PYGE 176 (520)
T ss_dssp CSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSS--TTCB
T ss_pred CCCCCeEEEECCCCCceEEECCCCCEEEECCCCCHHHHHHHHHHcCCcccCCCCCCCCeeeeeecccCCCcCCc--cccc
Confidence 5 46799999999999999999999999999999999999999999999877 333448999999999999975 8999
Q ss_pred CCccEEEEEEEecCCcEEEccCCcccC---------CCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCH
Q 009112 236 LHGNVLGLEAVLANGDVIDMLGTLRKD---------NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (543)
Q Consensus 236 ~~d~V~~~evV~~dG~i~~~~~~~~k~---------~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~ 306 (543)
++|+|++++||++||++++++....++ ..||||.++|.|+ +|||||+++||++|.|+......+.|++.
T Consensus 177 ~~d~v~~~evV~~dG~v~~~~~~~~~~~~l~~~~~~~~Gy~l~~l~~g~--~lGiVt~~~l~l~p~p~~~~~~~~~f~~~ 254 (520)
T 1wvf_A 177 HFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQA--NYGICTKMGFWLMPKPPVFKPFEVIFEDE 254 (520)
T ss_dssp GGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTS--SSCEEEEEEEECEECCSEEEEEEEEECCG
T ss_pred hhhcEeeeEEEcCCCcEEEeCCCcCCCchhHhhhcCCCCcchhhhccCC--ceEEEEEEEEEEEecCCeEEEEEEEeCCH
Confidence 999999999999999999987532222 4588888888754 99999999999999998777778889998
Q ss_pred HHHHHHH---HHHHHHhccccceeeecchhHHHHHHHhh-c---CCCCCCCCC----------CCceEEEEEecCCChhh
Q 009112 307 FSCQKLL---REAKRKLGEILSAFEFLDNQSMDLVLTYL-E---GVRNPFSSS----------MHNFYVLIETTGSEESY 369 (543)
Q Consensus 307 ~~~~~~~---~~~~~~~~~~~~a~e~ld~~~~~~~~~~~-~---~~~~p~~~~----------~~~~~llie~~g~~~~~ 369 (543)
+++.+++ .++.. .+..|+++|+||+..+..+.... . .....++.. ...+.+++++.|+. +.
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~ 332 (520)
T 1wvf_A 255 ADIVEIVDALRPLRM-SNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQ-EQ 332 (520)
T ss_dssp GGHHHHHHHHHHHHH-TTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHHHHHHHCCCSEEEEEEEEESH-HH
T ss_pred HHHHHHHHHHHHHHH-cCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHHHHHhcCCCceEEEEEEeCCH-HH
Confidence 8776644 44433 35568999999988655442200 0 000011100 02457888898865 34
Q ss_pred HHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHH---HHHHh--------cCceeEEeeecch--hhHHHHHH
Q 009112 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIA---EALMK--------AGAVYKYDLSLPV--EKMYDLVE 436 (543)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~---~~~~~--------~g~~~~~D~~vp~--~~l~~~~~ 436 (543)
.++.++.+.+.+.+.+.. ....+.+. +.+.+|.+|+.+. ..... .+..+.+|+++|. ++++++++
T Consensus 333 v~~~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~l~~~~~ 410 (520)
T 1wvf_A 333 VDVNWKIVTDVFKKLGKG-RIVTQEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAA 410 (520)
T ss_dssp HHHHHHHHHHHHHHHTCC-EEEEHHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCe-EEEecccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEeccccCCCHHHHHHHHH
Confidence 555555555555444432 22233333 4567899998765 21111 1234568999998 99999999
Q ss_pred HHHHHHhhcC-cEEEeeecCCCceEEEe--ccCCCChHHHHHHHHHHHHHHHhcCCeEEeeccCCchhh--hhh---hcc
Q 009112 437 KMRQRLGETA-KVIGYGHLGDGNLHLNI--SAPRYDDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKA--NKI---FYS 508 (543)
Q Consensus 437 ~~~~~~~~~g-~~~~~gH~gdGnlH~~i--~~~~~~~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~--~~l---~~~ 508 (543)
.+++.+.+++ ....+||+||||+|+++ .++..+++..+++++.+.+++.. ++|||+|..|. +|+ ..+
T Consensus 411 ~~~~~~~~~~~~~~~~gh~gdGnlH~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ehG~G~~k~~~~~~~~~~~~ 485 (520)
T 1wvf_A 411 MAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDE-----FEKEGYAVYRVNTRFQDRVAQS 485 (520)
T ss_dssp HHHHHHHHTTCCCCEEEEECSSEEEEEEEEEEETTCHHHHHHHHHHHHHHHHH-----HHHTTCCBSCCCGGGHHHHHHH
T ss_pred HHHHHHHHcCCCeeEeecccCcceeeeeccccCCCCHHHHHHHHHHHHHHHHH-----HHHcCCCccccChhHhhhhhhh
Confidence 9999998887 56789999999999987 44434445445566666666554 36899999984 577 889
Q ss_pred CCHHHHHHHHHHhHhcCCCCCCCCCcccCCC
Q 009112 509 KSPKTVQLMSSIKKLLDPNGILNPYKVLPHS 539 (543)
Q Consensus 509 ~g~~~~~~m~~iK~~~DP~gIlNPGk~~~~~ 539 (543)
+|++.+++|++||++|||+|||||||+++.+
T Consensus 486 ~g~~~~~lmr~IK~a~DP~~IlNPGki~~~~ 516 (520)
T 1wvf_A 486 YGPVKRKLEHAIKRAVDPNNILAPGRSGIDL 516 (520)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCBCTTGGGCCT
T ss_pred cCHHHHHHHHHHHHHcCCCCCCCCCcCCCCc
Confidence 9999999999999999999999999999765
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=100.00 E-value=3.5e-59 Score=509.74 Aligned_cols=425 Identities=14% Similarity=0.162 Sum_probs=314.4
Q ss_pred CCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhc-CCceEEEEcCCCCCCCCc
Q 009112 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS-RLLAVVPQGGNTGLVGGS 156 (543)
Q Consensus 78 ~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~-~~~pv~~~GgGt~~~g~~ 156 (543)
+.+.++++|+ + +++|.+++..+..|++||...+.+.|.+|++|+|++||+++|++|++ +++||+|+|||||+.|++
T Consensus 26 ~~~~~~~~l~--~-~~~v~~d~~~~~~~~~d~~~~~~~~P~~vv~P~s~eeV~~iv~~a~~~~~~~v~~~GgGts~~g~~ 102 (524)
T 2exr_A 26 STDGVSESLN--I-QGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQA 102 (524)
T ss_dssp --------CC--C-SSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSSTT
T ss_pred cHHHHHHhcC--C-CCeEEeCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhhcCceEEEECCCcCCCCcc
Confidence 4445666666 4 56899999999999999988889999999999999999999999995 999999999999999988
Q ss_pred ccCCCcEEEEeCCCCCeEEeeC-----CC--cEEEEeCCccHHHH-HHHHHhcCCccccCCCCCCcceecccccCCcCCC
Q 009112 157 VPVFDEVIINMGSMNNIITFDK-----GS--GVLVCEAGCILENL-VSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGL 228 (543)
Q Consensus 157 ~~~~~gvvIdl~~ln~i~~id~-----~~--~~v~v~aGv~~~~L-~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~ 228 (543)
.+. +||+|||++||+| ++|+ ++ .+++||||++|.++ ++.++++|+. |.++++...+||||++++|++|.
T Consensus 103 ~~~-~gvvidl~~m~~i-~i~~~~~~~~~~~~~v~v~aGv~~~~l~~~~l~~~Gl~-~~~~~s~~~~tiGG~va~ng~G~ 179 (524)
T 2exr_A 103 MAE-GGLVVDMSTTAEN-HFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLA-PRSWTDYLGLTVGGTLSNAGVSG 179 (524)
T ss_dssp CCT-TSEEEEGGGGTTS-CEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEE-CSCCCSCCSSBHHHHHTTCCCCT
T ss_pred cCC-CEEEEECcCCCCc-EEeecccCCCCCceEEEEeCCcCHHHHHHHHHHHcCCC-CCCCCcCCceeecccCCCCCCcc
Confidence 764 7999999999999 7877 55 89999999999997 5556699998 77788778899999999999999
Q ss_pred CccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHH
Q 009112 229 RLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFS 308 (543)
Q Consensus 229 ~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~ 308 (543)
.+.+||.++|+|++++||++||++++++.. .++||+++++||+|+|||||+++||+.|.|+......+.|+++++
T Consensus 180 ~~~~yG~~~d~V~~l~vV~~dG~v~~~~~~-----~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~ 254 (524)
T 2exr_A 180 QAFRYGPQTSNVTELDVVTGNGDVVTCSEI-----ENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDE 254 (524)
T ss_dssp THHHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHH
T ss_pred cccccCcHhhhEEEEEEEecCCeEEEECCC-----CChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHHH
Confidence 999999999999999999999999998764 578999999999999999999999999999987777888999999
Q ss_pred HHHHHHHHHHHhccccceeeecchhHHHHH-------HH-hhcCC----CCCCCCCCCceEEEEEe-----cCCChhhHH
Q 009112 309 CQKLLREAKRKLGEILSAFEFLDNQSMDLV-------LT-YLEGV----RNPFSSSMHNFYVLIET-----TGSEESYDR 371 (543)
Q Consensus 309 ~~~~~~~~~~~~~~~~~a~e~ld~~~~~~~-------~~-~~~~~----~~p~~~~~~~~~llie~-----~g~~~~~~~ 371 (543)
+.+++..+... +.. +++|++|...+... .. ++... ...++.....+++++|+ .|.+.+.++
T Consensus 255 ~~~~~~~l~~~-~~~-~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~llve~~~~~~~g~~~~~v~ 332 (524)
T 2exr_A 255 FTQDAEWLVSQ-KNE-SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTID 332 (524)
T ss_dssp HHHHHHHHHTS-CTT-SSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHc-CCc-chhHhhchhhhhcchhhhhhhhhcccccccccchhcCCcccccEEEEEEEEeecCCCCCHHHHH
Confidence 98888877542 333 57888886432211 00 00000 01122101347788999 787777777
Q ss_pred HHHHHHHHHHhhCCCeeeeE------EecCHHHHHHHHHHHHHHHHHHHhcCceeEEeeecchhhHHHHHHHHHHHHhhc
Q 009112 372 EKLEAFLLSSMEGGLISDGV------IAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGET 445 (543)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w~~R~~~~~~~~~~g~~~~~D~~vp~~~l~~~~~~~~~~~~~~ 445 (543)
++++.+.+.+...+...... ++.+..+ ..|+.|+....++.. . ..|++||+++++++++.+.+
T Consensus 333 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~W~~R~~~~~a~~~---~-~~Dv~VP~s~l~~~~~~v~~----- 401 (524)
T 2exr_A 333 KRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKR--SEEIAKENGTWETPH---P-WLNLFVSKRDIGDFNRTVFK----- 401 (524)
T ss_dssp HHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHH--HHHHHHHTTCSSSCC---C-CEEEEEEHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCeEeecccchhhhhhhhhh--HHHHhhhhcccccCC---C-eeEEEECHHHHHHHHHHHHH-----
Confidence 77777776665544321111 2222222 239988865432221 1 35999999999999887743
Q ss_pred CcEEEeeecCCCceEEEeccCCCCh--------------------------------HHHHH---HHHHHHHHHHhcC--
Q 009112 446 AKVIGYGHLGDGNLHLNISAPRYDD--------------------------------MIFAQ---IEPYVYEWTSEHR-- 488 (543)
Q Consensus 446 g~~~~~gH~gdGnlH~~i~~~~~~~--------------------------------~~~~~---~~~~~~~~~~~~g-- 488 (543)
+|+||||+|+++..+..++ ...++ ....+.+.+...|
T Consensus 402 ------~~~gdgn~h~~i~~~~~~~~~~~r~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~ 475 (524)
T 2exr_A 402 ------ELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGID 475 (524)
T ss_dssp ------CCTTTCCSSCEEEEEEEGGGSCTTSSCCCCSSCSEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ------HHhCCCCcceEEEEeCCchHHHhHHHhhCCCCccEEEEEEEeccCCCcccchHHHHHHHHHHHHHHHHHHcCCc
Confidence 7899999998776521100 11111 1223444455555
Q ss_pred --CeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCc-ccCC
Q 009112 489 --GSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYK-VLPH 538 (543)
Q Consensus 489 --Gsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk-~~~~ 538 (543)
++++++|+ ..+| ..++|+ .+++|++||+.|||+||||||| +|++
T Consensus 476 ~~~yl~~~~~----~~~w-~~~~G~-~~~~m~~iK~~~DP~~iLnPG~~if~~ 522 (524)
T 2exr_A 476 YKLYLPHYKS----QEEW-IRHFGN-RWSRFVDRKAMFDPMAILSPGQKIFNR 522 (524)
T ss_dssp EEESSCCCCS----HHHH-HHHHGG-GHHHHHHHHHHHCTTCCBCGGGCSSCC
T ss_pred cEEeecCCCC----HHHH-HHHhhh-HHHHHHHHHhhcCchhhcCCCCccCCC
Confidence 34666664 3345 344554 7899999999999999999999 4554
No 8
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=100.00 E-value=3.2e-56 Score=488.37 Aligned_cols=440 Identities=12% Similarity=0.124 Sum_probs=322.5
Q ss_pred CHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhc--C-CceEEEEcCCCCCCCC
Q 009112 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS--R-LLAVVPQGGNTGLVGG 155 (543)
Q Consensus 79 ~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~--~-~~pv~~~GgGt~~~g~ 155 (543)
+.+++++|+++..+.+|.+++..+..|++||+..+.+.|.+|++|+|++||+++|++|++ + ++||+++|+|||+.|+
T Consensus 31 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~~~v~~~G~G~~~~g~ 110 (534)
T 1w1o_A 31 GRPWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQ 110 (534)
T ss_dssp ---------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSST
T ss_pred hHHHHHHHHhcCCCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Confidence 346678899866677899999999999999988889999999999999999999999997 6 9999999999999998
Q ss_pred cccCCCcEEEEeCCCCCe-----EEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCc
Q 009112 156 SVPVFDEVIINMGSMNNI-----ITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRL 230 (543)
Q Consensus 156 ~~~~~~gvvIdl~~ln~i-----~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~ 230 (543)
+.+ .+|++|||++||+| +++|+++.+++||||++|.+|++++.++|++ ++++++...+||||++++|++|..+
T Consensus 111 ~~~-~~gvvi~l~~m~~i~~~~~~~~d~~~~~v~v~aGv~~~~l~~~~~~~Gl~-~~~~~~~~~~tvGG~v~~~g~g~~~ 188 (534)
T 1w1o_A 111 AFA-PGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVA-PRSWTDYLYLTVGGTLSNAGISGQA 188 (534)
T ss_dssp TCC-TTSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEE-ESCCCSSCCSBHHHHHTTCCCSTTH
T ss_pred cCC-CCeEEEECccccccccCccEEEcCCCCEEEECCCcCHHHHHHHHHHCCCc-ccCCCCCCCEEeceeccCCCccccc
Confidence 876 47999999999998 7999888999999999999999999999996 6577777789999999999999999
Q ss_pred cccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHH
Q 009112 231 VRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ 310 (543)
Q Consensus 231 ~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~ 310 (543)
.+||.++|+|+++|||++||++++++.. .++||+|+++||+|+|||||+++||++|.|+......+.|++++++.
T Consensus 189 ~~yG~~~d~v~~~evV~~dG~v~~~~~~-----~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~ 263 (534)
T 1w1o_A 189 FRHGPQISNVLEMDVITGHGEMVTCSKQ-----LNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFS 263 (534)
T ss_dssp HHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHHH
T ss_pred cccccHhhhEEEEEEEeCCccEEEECCC-----CChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHHHHH
Confidence 9999999999999999999999998764 67899999999999999999999999999987777778899998888
Q ss_pred HHHHHHHHHhcc-----ccceeeecchhHHHH---HHHhhcCC-CC---------CCCCC-CCceEEEEEec----CCCh
Q 009112 311 KLLREAKRKLGE-----ILSAFEFLDNQSMDL---VLTYLEGV-RN---------PFSSS-MHNFYVLIETT----GSEE 367 (543)
Q Consensus 311 ~~~~~~~~~~~~-----~~~a~e~ld~~~~~~---~~~~~~~~-~~---------p~~~~-~~~~~llie~~----g~~~ 367 (543)
+++..+... +. .++++|+||...+.. +..+ ... .. +++.. ....++++|+. |.+.
T Consensus 264 ~~~~~~~~~-~~~~~~~~~~~~e~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ie~~~~~~g~~~ 341 (534)
T 1w1o_A 264 ADQERLTAP-RPGGGGASFGPMSYVEGSVFVNQSLATDL-ANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATA 341 (534)
T ss_dssp HHHHHHHCB-C------CBCSCSEEEEEEEEGGGHHHHH-HTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC-----
T ss_pred HHHHHHHhc-ccccccccccchhHhhhhhhccccccccc-ccccccCccccccccccccccccceEEEEEEEEecCCCcc
Confidence 877666432 33 467899998654321 2222 122 11 01100 02457778875 6544
Q ss_pred --hhHHHHHHHHHHHHhhCCCeeeeEEe-----cCHHHHHHHHHHHHHHHHHHHhcCceeEEeeecchhhHHHHHHHHHH
Q 009112 368 --SYDREKLEAFLLSSMEGGLISDGVIA-----QDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQ 440 (543)
Q Consensus 368 --~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~w~~R~~~~~~~~~~g~~~~~D~~vp~~~l~~~~~~~~~ 440 (543)
+..++.++.+++.+.+.+........ .+. .....|+.|+...... ...+. |++||.++++++++.+.+
T Consensus 342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~-~~~~~w~~r~~~~~~~---~~~~~-d~~vP~s~l~~~~~~~~~ 416 (534)
T 1w1o_A 342 AAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDR-VHGEEVALNKLGLWRV---PHPWL-NMFVPRSRIADFDRGVFK 416 (534)
T ss_dssp --CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTH-HHHHHHHHHHTTCSSS---CCCCE-EEEEEGGGHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHhhcccCCcceeccchHHHHhhh-hhhhHHHHhhcccccc---CCccc-cEEecHHHHHhHHHHHHH
Confidence 44556666666655443331111111 111 1235588776532211 11244 999999999999988876
Q ss_pred HHhhcCc---EE----Eeee---------cCCCceEEEeccCCC--ChHH---HHHHHHHHHHHHHhc----CCeEEeec
Q 009112 441 RLGETAK---VI----GYGH---------LGDGNLHLNISAPRY--DDMI---FAQIEPYVYEWTSEH----RGSISAEH 495 (543)
Q Consensus 441 ~~~~~g~---~~----~~gH---------~gdGnlH~~i~~~~~--~~~~---~~~~~~~~~~~~~~~----gGsis~eH 495 (543)
.+.+.+. .+ ..|| .+|||+|+++..... +++. .++....+.+.+.+. ++.+..+|
T Consensus 417 ~l~~~~~~~~~~~~~~~~gh~~~~~~s~v~~dgn~h~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~yl~~~~ 496 (534)
T 1w1o_A 417 GILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHT 496 (534)
T ss_dssp TTTTTSCCCSCEEEEEEEGGGSCTTSSCCCCSSSEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHTTCCCEESSCCCS
T ss_pred HHhhccCCcccEEEeecccccccccccccCCCccEEEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhCCCcEEECCCCC
Confidence 4444321 11 1377 689999998876432 2111 233444555555564 34455666
Q ss_pred cCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCCCc-ccC
Q 009112 496 GLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYK-VLP 537 (543)
Q Consensus 496 GiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk-~~~ 537 (543)
. ..+|. .+||+++++.|++||++|||+||||||| +|+
T Consensus 497 ~----~~~w~-~~~G~~~~~~l~~iK~~~DP~~ilnpgk~I~~ 534 (534)
T 1w1o_A 497 D----RSDWV-RHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN 534 (534)
T ss_dssp S----HHHHH-HHHCHHHHHHHHHHHHHHCTTCCBCGGGCSCC
T ss_pred C----hHHHH-HHhCHHHHHHHHHHHHhcCchhhcCCCCcCCC
Confidence 2 57785 5799878999999999999999999999 654
No 9
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=100.00 E-value=4e-42 Score=366.41 Aligned_cols=381 Identities=14% Similarity=0.144 Sum_probs=272.6
Q ss_pred hhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcEEEE
Q 009112 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVC 185 (543)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v 185 (543)
.++|+..+...|.+|++|+|++||+++|++| +|++++|+||++.+.+.+..+|++|||++||+|+++|+++.+|+|
T Consensus 10 ~~~w~~~~~~~p~~v~~P~s~~ev~~~v~~a----~~v~~~G~G~s~~~~~~~~~~g~vi~l~~l~~i~~~d~~~~~v~v 85 (422)
T 2vfr_A 10 VTNWAGNITYTAKELLRPHSLDALRALVADS----ARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAARTVRV 85 (422)
T ss_dssp CBCSSSSCBCSCSSCBCCSSHHHHHHHHHHC----SSEEECSSCCCCSSTTCCCTTCEEECSTTSCCCEEEETTTTEEEE
T ss_pred eecCCCCccCCCCEEEeCCCHHHHHHHHHhC----CCEEEEECCCCCCCCccCCCCcEEEEhhhCCCcEEEcCCCCEEEE
Confidence 3578888999999999999999999999999 799999999999988775567999999999999899999999999
Q ss_pred eCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCCC
Q 009112 186 EAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTG 265 (543)
Q Consensus 186 ~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g 265 (543)
|||+++.+|+++|.++|+.+| ++++.+.+||||++++|++|.+ .+||.++|+|+++++|++||++++++.+ ++
T Consensus 86 ~aG~~l~~l~~~l~~~Gl~l~-~~~~~~~~tvGG~i~~~~~G~~-~~~G~~~d~v~~~~vv~~~G~~~~~~~~---~~-- 158 (422)
T 2vfr_A 86 GGGVRYAELARVVHARGLALP-NMASLPHISVAGSVATGTHGSG-VGNGSLASVVREVELVTADGSTVVIARG---DE-- 158 (422)
T ss_dssp ETTCBHHHHHHHHHHTTEECS-CCCSSSCSBHHHHHHHTCCCCC-TTCCCGGGGEEEEEEECTTSCEEEEETT---ST--
T ss_pred cCCCCHHHHHHHHHHcCCccc-CCCCCCCeeHHHHHhcCCCCCC-cccCcHHHheEEEEEEeCCCCEEEeCCC---CC--
Confidence 999999999999999999987 5666777899999999999986 6999999999999999999999998865 22
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHH-HHHHHHHHHhccccceeeecchhHHHHHHHhh-c
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ-KLLREAKRKLGEILSAFEFLDNQSMDLVLTYL-E 343 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~e~ld~~~~~~~~~~~-~ 343 (543)
. +++++||+|++||||+++||+.|.|+.....+. +.+++++. +.+.++. ..+.++|+++ ..++...... .
T Consensus 159 -~-f~~~~g~~G~lGvit~~~l~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~e~~~-~~~~~~~~~~~~ 230 (422)
T 2vfr_A 159 -R-FGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFT-ELPLAGLDPATFETVM----AAAYSVSLFT-DWRAPGFRQVWL 230 (422)
T ss_dssp -T-GGGTSSCTTTTCEEEEEEEECEECCEEEEEEEE-EECSTTCCHHHHHHHH----TSSSEEEEEE-CSSSSSEEEEEE
T ss_pred -C-cceEEecCCCCEEEEEEEEEEEecCceEEEEEe-cCCHHHHHHHHHHHHH----hcCCcEEEEe-cCCCceeEEEEe
Confidence 2 699999999999999999999999986655544 66888888 7777664 2356788887 5432200000 0
Q ss_pred CCCCCCCCCCC-ceEEEEEecCCChhhHHHHHHHHHHHHhhCCCeeeeEEecCHHHHHHHHHHHHHHHHHHHhc------
Q 009112 344 GVRNPFSSSMH-NFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKA------ 416 (543)
Q Consensus 344 ~~~~p~~~~~~-~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~~~~------ 416 (543)
....+.+.. . .+ .+....... .........+.. .......|..+.. ....
T Consensus 231 ~~~~~~~~~-~~~~---~~~~~~~~~--------------~~p~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~p~~ 287 (422)
T 2vfr_A 231 KRRTDRPLD-GFPY---AAPAAEKMH--------------PVPGMPAVNCTE-QFGVPGPWHERLP----HFRAEFTPSS 287 (422)
T ss_dssp EEETTSCCC-CCTT---SEECSSCCC--------------SSTTSCGGGBCC-CTTCCEEGGGTSS----SBCTTCCCSC
T ss_pred cCcCCCCCC-CchH---HHHHHhhcc--------------cCcccChhhhcc-cCCccccHHHhcc----cccccccCCc
Confidence 000000000 0 11 000000000 000000000000 0000011110000 0001
Q ss_pred CceeEEeeecchhhHHHHHHHHHHHHhh-cCc----EEEeeecCCCceEE-------EeccCC-CChHHHHHHHHHHHHH
Q 009112 417 GAVYKYDLSLPVEKMYDLVEKMRQRLGE-TAK----VIGYGHLGDGNLHL-------NISAPR-YDDMIFAQIEPYVYEW 483 (543)
Q Consensus 417 g~~~~~D~~vp~~~l~~~~~~~~~~~~~-~g~----~~~~gH~gdGnlH~-------~i~~~~-~~~~~~~~~~~~~~~~ 483 (543)
...+.+|++||+++++++++++++.+++ ... ...|+|.++|.+|+ .+.... .+.+....+-+.+.++
T Consensus 288 ~~~~~~e~avP~e~~~~~l~~l~~~~~~~~~~~~~v~~r~~~~~~~~Ls~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~l 367 (422)
T 2vfr_A 288 GAELQSEYLMPREHALAALHAMDAIRETLAPVLQTCEIRTVAADAQWLSPAYGRDTVAAHFTWVEDTAAVLPVVRRLEEA 367 (422)
T ss_dssp CSCEEEEEEEEGGGHHHHHHHHHHTHHHHGGGEEEEEEEEECCBCSTTCTTBTSCEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEEEHHHHHHHHHHHHHHHHhCCCceeeEEEEeecCCccccCCCCCCCeEEEEEecCCCchhHHHHHHHHHHH
Confidence 2345679999999999999999998876 221 14589998987776 222211 1122233556677888
Q ss_pred HHhcCCeEE-eeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCCC
Q 009112 484 TSEHRGSIS-AEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNP 532 (543)
Q Consensus 484 ~~~~gGsis-~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlNP 532 (543)
+.++||+++ ++++ .+..+++...|+ .++.|+++|+.|||+|+||.
T Consensus 368 v~~~gG~~~wgk~~--~~~~~~~~~~Yp--~~~~f~~vk~~~DP~g~f~n 413 (422)
T 2vfr_A 368 LVPFAARPHWGKVF--TVPAGELRALYP--RLADFGALAGALDPAGKFTN 413 (422)
T ss_dssp HGGGTCEECTTSCC--CCCHHHHHTTCT--THHHHHHHHHHHCTTCTTCC
T ss_pred HHHcCCcccccccC--CCCHHHHHHHCc--CHHHHHHHHHHhCCCCccCC
Confidence 999999987 6644 567788888886 69999999999999999985
No 10
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=100.00 E-value=3.6e-39 Score=350.66 Aligned_cols=232 Identities=16% Similarity=0.202 Sum_probs=195.2
Q ss_pred CHHHHHHHHHhhCCCceecCHH-----HHHHhh--hhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCC
Q 009112 79 NSEDVSYFKELLGEKSVIQDED-----VLLAAN--EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTG 151 (543)
Q Consensus 79 ~~~~~~~l~~~~g~~~v~~~~~-----~l~~~~--~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~ 151 (543)
.++++..|.+.++++.|++... .+..|. ..|+.....+|.+||+|+|++||+++|++|+++++||++|||||+
T Consensus 8 ~~~f~~~L~~~~~~~~v~~~~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~gGh~ 87 (500)
T 3tsh_A 8 KEDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHD 87 (500)
T ss_dssp -CHHHHHHHHHSCGGGEEETTSTTHHHHHHTTCCCTTTTSTTSCCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCC
T ss_pred HHHHHHHHHhhCCCCEEECCCCCccHHHHHhhhccccccCCCCCCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcC
Confidence 3567888999998887876422 233332 348777788899999999999999999999999999999999999
Q ss_pred CCCCc---ccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCC
Q 009112 152 LVGGS---VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGL 228 (543)
Q Consensus 152 ~~g~~---~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~ 228 (543)
+.|.+ .+.+++++|||++||+| ++|+++.+++||||++|.+|+++|.++|+.+++.+|+++++++||+++++++|.
T Consensus 88 ~~g~s~~~~~~~~~~~idl~~~~~v-~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~g~ 166 (500)
T 3tsh_A 88 YEGLSYRSLQPETFAVVDLNKMRAV-WVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGM 166 (500)
T ss_dssp TTCTTTCCSSSCCEEEEECTTCCCE-EEETTTTEEEEETTSBHHHHHHHHHHHCTTEECCCCSSTTSBHHHHHHTCCCCT
T ss_pred CCCCcCCCCCcCCeEEEECcCCCCE-EECCCCCEEEEccCcCHHHHHHHHHHhCCCcccCCCCCCCceecCccccccCCc
Confidence 87754 33467999999999998 899999999999999999999999999998887889999999999999999999
Q ss_pred CccccCCCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhc-cCCCeEEEEEEEEEeccCCcceeEEEEEeCCHH
Q 009112 229 RLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYF 307 (543)
Q Consensus 229 ~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~G-s~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~ 307 (543)
.+.+||.++|+|+++|||++||+++... ..+.||+|+++| ++|+|||||+++||++|.|+......+.+...+
T Consensus 167 ~~~~~G~~~d~v~~~~vV~a~G~i~~~~------~~~~dl~~a~~gg~gg~fGvvt~~~~~~~p~p~~~~~~~~~~~~~~ 240 (500)
T 3tsh_A 167 LLRKYGIAAENVIDVKLVDANGKLHDKK------SMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSE 240 (500)
T ss_dssp THHHHCCGGGGEEEEEEECTTSCEECHH------HHCHHHHHHHTTSCSSTTCEEEEEEEECEECCSCEEEEEEEEETTT
T ss_pred cccccCChhhheeeEEEECCCceEEECC------CCChHHHHHHHhhcccceEEEEEEEEEEEeCCCeEEEEEEecCcHH
Confidence 9999999999999999999999987543 245699999995 567999999999999999986655555555555
Q ss_pred HHHHHHHHHH
Q 009112 308 SCQKLLREAK 317 (543)
Q Consensus 308 ~~~~~~~~~~ 317 (543)
.+.+++..++
T Consensus 241 ~~~~~~~~~~ 250 (500)
T 3tsh_A 241 GAVDIINKWQ 250 (500)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556655554
No 11
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=100.00 E-value=2.3e-37 Score=333.54 Aligned_cols=404 Identities=14% Similarity=0.180 Sum_probs=264.1
Q ss_pred hhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcC--CceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCCcE
Q 009112 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGV 182 (543)
Q Consensus 105 ~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~--~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~~~ 182 (543)
+.++|. ++.+.|.+|++|+|++||+++|++|+++ ++|++++|+|||+.+.+.+ .+|++|||++||+|+++|+++.+
T Consensus 32 ~~~~W~-~~~~~p~~vv~P~s~eev~~~v~~a~~~~~~~~v~~~G~G~s~~~~~~~-~~gvvIdl~~l~~i~~~d~~~~~ 109 (481)
T 4feh_A 32 RLTGWG-RTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQN-GGGLVIDMTPLNTIHSIDADTKL 109 (481)
T ss_dssp EECCTT-CCSCEEEEEEECSCHHHHHHHHHHHHTTTCTTCEEEECSSCSSSSTTCC-TTSEEEECTTCCCEEEEETTTTE
T ss_pred eeeccc-CCCCCCCEEEeCCCHHHHHHHHHHHHHcCCCceEEEEeCCcCCCCCCCC-cCeEEEECccCCCceEEcCCCCE
Confidence 456885 5799999999999999999999999999 7999999999999776653 57999999999999999999999
Q ss_pred EEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccC
Q 009112 183 LVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (543)
Q Consensus 183 v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~ 262 (543)
|+||||+++.+|.++|.++|+++|..||+. .+||||+|++|+||.++.+||.++|+|+++++|++||++++++.+
T Consensus 110 v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~-~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~~s~~---- 184 (481)
T 4feh_A 110 VDIDAGVNLDQLMKAALPFGLWVPVLPGTR-QVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPT---- 184 (481)
T ss_dssp EEEETTCBHHHHHHHHGGGTEECSCCCSCS-CCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEEECSS----
T ss_pred EEEcCCccHHHHHHHHHHcCCEEEEeCCcC-ccccCCccccccCCCCcccCCCccceEeEEEEEeCCCCEEEeCCC----
Confidence 999999999999999999999999888875 579999999999999989999999999999999999999998754
Q ss_pred CCCCccchhhhccCCCeEEEEEEEEEeccCCc-ceeEEEEEeCCHHHHHHHHHHHHHHhccccceeeecchhHHH-----
Q 009112 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS-SVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMD----- 336 (543)
Q Consensus 263 ~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~e~ld~~~~~----- 336 (543)
..++||+++++||+|++||||+++||+.|.|+ +.....+.+.+++++++.+.+... ......+.++|..+..
T Consensus 185 ~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~w~d~~~~~~~~~r 262 (481)
T 4feh_A 185 GEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDGSE--ARYTYSSAWFDAISAPPKLGR 262 (481)
T ss_dssp STTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSSSGG--GGCSEEEEEECCSSCTTSTTC
T ss_pred CCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEEeccCCCCCCCe
Confidence 15679999999999999999999999999985 445556788999998888764321 1122345555521000
Q ss_pred HH---HHhhc--C-----CCCCCCCCCCceEEEEEecCCChhhHHHHHHHHHHHHhh-CCCeeeeEEecCHHHHHHHHHH
Q 009112 337 LV---LTYLE--G-----VRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME-GGLISDGVIAQDINQASSFWRI 405 (543)
Q Consensus 337 ~~---~~~~~--~-----~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~ 405 (543)
.. ..+.. . ...|+... ......+...-.........+..+.+.... ... ....+.. ...++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vp~~~p~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~p 336 (481)
T 4feh_A 263 AAVSRGRLATVEQLPAKLRSEPLKFD-APQLLTLPDVFPNGLANKYTFGPIGELWYRKSGT-YRGKVQN----LTQFYHP 336 (481)
T ss_dssp EEEEEEEECCGGGSCGGGGGSTTCCC------------------------------CCSCC-EEEEEEE----HHHHHC-
T ss_pred EEEEeCCcCcccccccccccCccccc-cccccCCCccCcHHHHhHHHHHHHHHHHHhhCcc-ccccccc----ceeeech
Confidence 00 00000 0 00111000 000011110000000000001111111100 111 0111111 1222222
Q ss_pred HHHHHHHHHhcC--ceeEEeeecchhhHHHHHHHHHHHHhhcC-----cE-EEeeecCCCc---------eEEEeccCCC
Q 009112 406 REGIAEALMKAG--AVYKYDLSLPVEKMYDLVEKMRQRLGETA-----KV-IGYGHLGDGN---------LHLNISAPRY 468 (543)
Q Consensus 406 R~~~~~~~~~~g--~~~~~D~~vp~~~l~~~~~~~~~~~~~~g-----~~-~~~gH~gdGn---------lH~~i~~~~~ 468 (543)
.+.+...-...+ ....++++||.+ .++.+.++.+.+.+.+ .+ .-|+-..++. +.+.+...
T Consensus 337 ~d~v~~~nr~yg~~~f~q~e~~vP~~-~~~al~~l~~~i~~~~~~~~~~v~~R~~~~d~~~LS~~~~~~tlal~~~~~-- 413 (481)
T 4feh_A 337 LDMFGEWNRAYGPAGFLQYQFVIPTE-AVDEFKKIIGVIQASGHYSFLNVFKLFGPRNQAPLSFPIPGWNICVDFPIK-- 413 (481)
T ss_dssp ------CHHHHTTTSEEEEEEEEETT-CHHHHHHHHHHHHHTTCCCSCCEEEEECCCCSCTTCCCCSEEEEEEEEECC--
T ss_pred hhhccccccccCCCCcEEEEEEeccc-HHHHHHHHHHHHHhcCCCceEEEEEEEeCCCCccCCCCCCceEEEEEccCC--
Confidence 222222111122 256789999999 9999999988888775 11 2233212221 22222111
Q ss_pred ChHHHHHHHHHHHHHHHhcCCeEEeeccCCchhhhhhhccCCHHHHHHHHHHhHhcCCCCCCC
Q 009112 469 DDMIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILN 531 (543)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~gGsis~eHGiG~~k~~~l~~~~g~~~~~~m~~iK~~~DP~gIlN 531 (543)
+ ...++.+.+.+++.++||.+.-..-- .+.++.+...| +.++.++++|+.+||+|+|.
T Consensus 414 -~-~~~~~~~~le~i~~~~gGRphw~K~~-~~~~~~~~~~Y--P~~~~F~~lr~~~DP~g~F~ 471 (481)
T 4feh_A 414 -D-GLGKFVSELDRRVLEFGGRLYTAKDS-RTTAETFHAMY--PRVDEWISVRRKVDPLRVFA 471 (481)
T ss_dssp -T-THHHHHHHHHHHHHHTTCEECGGGCS-SCCHHHHHHHC--TTHHHHHHHHHHHCTTCCBC
T ss_pred -c-cHHHHHHHHHHHHHHcCCEecchhcc-CCCHHHHHHhC--cCHHHHHHHHHhhCCccccC
Confidence 1 23455667788999999998632211 23455666677 37899999999999999874
No 12
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=100.00 E-value=2e-37 Score=333.43 Aligned_cols=211 Identities=19% Similarity=0.230 Sum_probs=182.7
Q ss_pred CHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEee
Q 009112 98 DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD 177 (543)
Q Consensus 98 ~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id 177 (543)
++..+....+.|+..+.+.|.+|++|+|++||+++|++|+++++|++++||||++.|.+. ..+|++|||++||+| ++|
T Consensus 20 ~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~-~~~gvvi~l~~l~~i-~~d 97 (459)
T 2bvf_A 20 DDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYAT-NDGGIVLDLRLMNSI-HID 97 (459)
T ss_dssp TSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTC-CSSSEEEECTTCCCE-EEE
T ss_pred CCccHHHHHHHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCccc-cCCeEEEECCCCCCE-EEC
Confidence 334455556778888899999999999999999999999999999999999999988764 357999999999999 899
Q ss_pred CCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccC
Q 009112 178 KGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (543)
Q Consensus 178 ~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~ 257 (543)
+++.+|+||||++|.+|+++|.++|+.+|. |.+..++|||++.++++|+.+.+||.++|+|+++|||++||++++++.
T Consensus 98 ~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~--g~~~~~gi~G~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~ 175 (459)
T 2bvf_A 98 TAGSRARIGGGVISGDLVKEAAKFGLAAVT--GMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSD 175 (459)
T ss_dssp TTTTEEEEETTCBHHHHHHHHHTTTEEECC--CSCTTSBHHHHHTTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEES
T ss_pred CCCCEEEECCCCCHHHHHHHHHHcCCEecC--CCCCCcccceeecCCCCccccccccCHhHhEEEEEEEcCCCeEEEeCC
Confidence 999999999999999999999999999884 666778999999999999999999999999999999999999999876
Q ss_pred CcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCC--HH--HHHHHHHHHH
Q 009112 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKD--YF--SCQKLLREAK 317 (543)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~--~~--~~~~~~~~~~ 317 (543)
. .++||+|+++||+|+|||||+++||++|.|.......+.|+. .+ ++++++.++.
T Consensus 176 ~-----~~~dLf~a~rg~~g~~GiVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (459)
T 2bvf_A 176 D-----ERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDAL 234 (459)
T ss_dssp S-----SSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred C-----CChhhHhHhhccCCccEEEEEEEEEEEECCCcEEEEEEEechHHhhHHHHHHHHHHHH
Confidence 4 467999999999999999999999999996544444444553 34 4455555443
No 13
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=100.00 E-value=2.6e-35 Score=321.14 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=172.9
Q ss_pred CCCceecCHHHHHHhh-hhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCC
Q 009112 91 GEKSVIQDEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS 169 (543)
Q Consensus 91 g~~~v~~~~~~l~~~~-~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ 169 (543)
+...+..++..+.... +.|..++.+.|.+|++|+|++||+++|++|+++++|++++||||++.|.+.+..+|++|||++
T Consensus 29 ~~~v~~p~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGh~~~g~~~~~~~gvvIdl~~ 108 (521)
T 2ipi_A 29 ALVKVDRVDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQ 108 (521)
T ss_dssp CCCEEESSSTTHHHHHTCCSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTTCCEEEECTT
T ss_pred CCeEECCCCcchHHHHhccccccccCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccCCCeEEEeccc
Confidence 4444555555565555 778778889999999999999999999999999999999999999988766556799999999
Q ss_pred CCCeEEeeCCCcEEEEeCCccHHHHHHHHH-hcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEec
Q 009112 170 MNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLA 248 (543)
Q Consensus 170 ln~i~~id~~~~~v~v~aGv~~~~L~~~l~-~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~ 248 (543)
||+| ++|+++.+|+||||++|.+|+++|. ++|+.+|. |.+..++|||+++++++|+.+.+||.++|+|+++|||++
T Consensus 109 l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~ 185 (521)
T 2ipi_A 109 MRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIPA--GVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVVV 185 (521)
T ss_dssp CCCE-EEETTTTEEEECTTSBHHHHHHHHHHHHSBCCCC--CSCTTCBHHHHTTTTCCCTTHHHHCCGGGGEEEEEEEEE
T ss_pred CCCe-EEeCCCCEEEEeCCcCHHHHHHHHHHhcCceeCC--CCCCCcccCCcccCCCCCccccccccHhhcEEEEEEEEe
Confidence 9999 9999999999999999999999997 79999874 666788999999999999999999999999999999997
Q ss_pred C--CcEEEccCCcccCCCCCccchhhhcc-CCCeEEEEEEEEEe-----------ccCCc
Q 009112 249 N--GDVIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT-----------PPKLS 294 (543)
Q Consensus 249 d--G~i~~~~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~v~lrl-----------~p~p~ 294 (543)
| |+++.......+++.++||+|+++|+ +|+|||||+++||+ +|.|+
T Consensus 186 d~~G~i~~~~~~~~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~~~~~~~~~~~~p~~~ 245 (521)
T 2ipi_A 186 DASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAP 245 (521)
T ss_dssp CTTSCEEEEEEECCTTCTTHHHHHHTTTSCSSSSCEEEEEEECCSSCCSSCGGGSSCBCC
T ss_pred cCCccEEEEecccccCCCCHHHHHHHhcCCCCceEEEEEEEEEeecccCCCcccccCCCC
Confidence 7 99755432212344556799999985 69999999999999 88875
No 14
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=100.00 E-value=9.9e-36 Score=321.57 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=178.5
Q ss_pred hhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccC-CCcEEEEeCCCCCeEEeeCCCcEEE
Q 009112 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV-FDEVIINMGSMNNIITFDKGSGVLV 184 (543)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~-~~gvvIdl~~ln~i~~id~~~~~v~ 184 (543)
+.+|.......|.+|++|+|++||+++|++|+++++||+++||||++.|.+.+. .+|++|||++||+| ++|+++.+++
T Consensus 35 n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrGgGh~~~g~~~~~~~ggvvIdl~~m~~i-~vd~~~~~v~ 113 (495)
T 3fw9_A 35 NPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRV-SIDLESETAW 113 (495)
T ss_dssp CGGGCSTTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCSSCEEEEECTTCCCE-EEETTTTEEE
T ss_pred hcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCccccCCCCeEEEECCCCCcE-EEeCCCCEEE
Confidence 457777778899999999999999999999999999999999999998887653 46899999999999 9999999999
Q ss_pred EeCCccHHHHHHHHHhc--CCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccC
Q 009112 185 CEAGCILENLVSFLDDH--GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (543)
Q Consensus 185 v~aGv~~~~L~~~l~~~--Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~ 262 (543)
||||+++.+|+++|.++ |+.+| +|++++++|||.++++++|..+.+||.++|+|++++||++||++++ . +
T Consensus 114 V~aG~~l~~l~~~l~~~g~gl~~~--~G~~~~vgigG~~~gGg~G~~~~~~G~~~D~v~~~~vV~adG~i~~-~-----~ 185 (495)
T 3fw9_A 114 VESGSTLGELYYAITESSSKLGFT--AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD-R-----Q 185 (495)
T ss_dssp EETTCBHHHHHHHHHHHCSSEECC--CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEEC-H-----H
T ss_pred EcCCCCHHHHHHHHHHhcCCceec--cCCCCCCeEeeeccCCCCcccccCCCchhheEEEEEEEcCCCCEEE-c-----C
Confidence 99999999999999999 66666 6888899999999999999999999999999999999999999996 1 2
Q ss_pred CCCCccchhhhc-cCCCeEEEEEEEEEeccCCcceeEEEEEeC-CHHHHHHHHHHHH
Q 009112 263 NTGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAK 317 (543)
Q Consensus 263 ~~g~dL~~~~~G-s~G~lGIIt~v~lrl~p~p~~~~~~~~~~~-~~~~~~~~~~~~~ 317 (543)
..++||+|+++| ++|+|||||+++||++|.|+......+.++ +.+++.+++..++
T Consensus 186 ~~~~DLf~a~rGg~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~a~~~l~~~~ 242 (495)
T 3fw9_A 186 AMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQ 242 (495)
T ss_dssp HHCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCChhhhhhhhcccCCCcEEEEEEEEEEEeCCCeEEEEEEeecCcHHHHHHHHHHHH
Confidence 357899999998 789999999999999999987665555553 3466666666554
No 15
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=100.00 E-value=9.4e-36 Score=324.61 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=173.4
Q ss_pred CHHHHHHhh-hhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEe
Q 009112 98 DEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITF 176 (543)
Q Consensus 98 ~~~~l~~~~-~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~i 176 (543)
++..+.... +.|..++.+.|.+|++|+|++||+++|++|+++++||+++||||++.|.+.+..+|++|||++||+| ++
T Consensus 38 ~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~gvvIdl~~m~~i-~~ 116 (523)
T 2wdx_A 38 DDPRYLNLKLRGANSRFNGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVKVIIDMSLLTEI-AY 116 (523)
T ss_dssp TSTTHHHHHTCSSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCSSSSSSSTTCCEEEECTTCCCE-EE
T ss_pred CCcchHHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccCCCCeEEEEcccCCCE-EE
Confidence 334454444 6677777889999999999999999999999999999999999999987766567999999999999 99
Q ss_pred eCCCcEEEEeCCccHHHHHHHHH-hcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecC--CcEE
Q 009112 177 DKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN--GDVI 253 (543)
Q Consensus 177 d~~~~~v~v~aGv~~~~L~~~l~-~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~d--G~i~ 253 (543)
|+++.+|+||||++|.+|+++|. ++|+.+|. |++++++|||+++++++|+.+.+||.++|+|+++|||++| |+++
T Consensus 117 d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~v~ 194 (523)
T 2wdx_A 117 DPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPG--GVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKAR 194 (523)
T ss_dssp ETTTTEEEECTTCBHHHHHHHHHHHHSCCCCC--CCCTTCBHHHHHHHTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEE
T ss_pred cCCCCEEEEcCCCCHHHHHHHHHHhcCeEEcc--CCCCCCeeCccccCCCCCcccccccChhheEEEEEEEEecCCccEE
Confidence 99999999999999999999998 59999884 8888899999999999999999999999999999999955 9986
Q ss_pred EccCCcccCCCCCccchhhhc-cCCCeEEEEEEEEEe-----------ccCCcc-eeEEEEEeC
Q 009112 254 DMLGTLRKDNTGYDLKHLFIG-SEGSLGIVTKVSIHT-----------PPKLSS-VNLAFLACK 304 (543)
Q Consensus 254 ~~~~~~~k~~~g~dL~~~~~G-s~G~lGIIt~v~lrl-----------~p~p~~-~~~~~~~~~ 304 (543)
.+.....+++.++||+|+++| ++|+|||||+++||+ +|.|+. .....+.|+
T Consensus 195 ~~~~~~~~~~~~~DLf~a~rGgg~g~~GIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (523)
T 2wdx_A 195 VIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFD 258 (523)
T ss_dssp EEEEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSSCCCSCGGGSSCCCCSEEEEEEEECC
T ss_pred EEecccccCCCChHHHHHhhccCCCCcEEEEEEEEEeecccCCCcccccCCCcccEEEEEEEec
Confidence 553221234556679999996 469999999999999 998753 334444453
No 16
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=100.00 E-value=1.2e-34 Score=314.68 Aligned_cols=224 Identities=15% Similarity=0.177 Sum_probs=184.4
Q ss_pred HHHHHHhhCCCc--ee-cCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCccc-
Q 009112 83 VSYFKELLGEKS--VI-QDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP- 158 (543)
Q Consensus 83 ~~~l~~~~g~~~--v~-~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~- 158 (543)
+++|++.++... +. .+...+......|+..+.+.|.+|++|+|++||+++|++|+++++|++++||||++.+.+.+
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~~~ 85 (503)
T 1zr6_A 6 FNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85 (503)
T ss_dssp TCHHHHHHHHTTCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTS
T ss_pred HHHHHHhhCcCCceecCCCccchHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccC
Confidence 345666776433 22 23333444456787788999999999999999999999999999999999999999886654
Q ss_pred CCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhc-CCccccCCCCCCcceecccccCCcCCCCccccCCCC
Q 009112 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDH-GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH 237 (543)
Q Consensus 159 ~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~-Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~ 237 (543)
..+|++|||++||+| ++| ++.+|+||||+++.+|+++|.++ |+.+|. |.+..++|||.+.++++|+.+.+||.++
T Consensus 86 ~~~gvvIdl~~l~~i-~~d-~~~~v~v~aG~~~~~l~~~l~~~~gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~ 161 (503)
T 1zr6_A 86 EDGHLMLELDRMYRV-SVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTCPAVGVGGHVLGGGYGFATHTHGLTL 161 (503)
T ss_dssp SSSCEEEECTTCCCE-EEC-TTSCEEEETTCBHHHHHHHHHHTTSEECCC--CSCTTSBHHHHHHHCCCSTTHHHHCCGG
T ss_pred CCCcEEEECccCCCE-EEC-CCCeEEEecCCCHHHHHHHHHHcCCEEeCC--CCCCcCchhhhhcCCCCCcccccccChh
Confidence 456899999999999 899 88899999999999999999666 588873 6667788999999999999999999999
Q ss_pred ccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeC-CHHHHHHHHHH
Q 009112 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLRE 315 (543)
Q Consensus 238 d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~-~~~~~~~~~~~ 315 (543)
|+|++++||++||++++++.. .++||+|+++||+|+|||||+++||++|.|+......+.+. +.+++.+++..
T Consensus 162 D~v~~~~vV~a~G~i~~~~~~-----~~~dL~~a~rG~~g~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (503)
T 1zr6_A 162 DWLIGATVVLADASIVHVSET-----ENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKA 235 (503)
T ss_dssp GGEEEEEEECTTSCEEEEBTT-----BSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEEEECCCHHHHHHHHHH
T ss_pred heEEEEEEEecCCCEEEeCCC-----CCccHHHHHhccCCCcEEEEEEEEEEEecCceeEEEEEEEeCCHHHHHHHHHH
Confidence 999999999999999998754 56799999999999999999999999999975544444442 23344444433
No 17
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=100.00 E-value=5.1e-34 Score=311.26 Aligned_cols=188 Identities=20% Similarity=0.239 Sum_probs=164.1
Q ss_pred cCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEe
Q 009112 97 QDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITF 176 (543)
Q Consensus 97 ~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~i 176 (543)
.++..+....+.|+.++.+.|.+|++|+|++||+++|++|+++++||+++||||++.|.+.+..+|++|||++||+| ++
T Consensus 39 p~~~~Y~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~gvvIdl~~l~~i-~~ 117 (530)
T 2y3s_A 39 PGDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAV-GF 117 (530)
T ss_dssp TTSTTHHHHTCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTCTTCCEEEECTTCCCE-EE
T ss_pred CCCccHHHHHhHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccCCCeEEEEcccCCCE-EE
Confidence 34445666667787788899999999999999999999999999999999999999987765567999999999999 99
Q ss_pred eCCCcEEEEeCCccHHHHHHHHHh-cCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEe--cCCcEE
Q 009112 177 DKGSGVLVCEAGCILENLVSFLDD-HGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL--ANGDVI 253 (543)
Q Consensus 177 d~~~~~v~v~aGv~~~~L~~~l~~-~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~--~dG~i~ 253 (543)
|+++.+|+||||++|.+|+++|.+ +|+.++ .|++++++|||+++++++|+.+.+||.++|+|+++|||+ ++|+++
T Consensus 118 d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~--~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~i~ 195 (530)
T 2y3s_A 118 DEERGAFAVEAGATLGAVYKTLFRVWGVTLP--GGACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDAR 195 (530)
T ss_dssp ETTTTEEEEETTCBHHHHHHHHHHHHSCCCC--CCSCTTCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEE
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHhhcCeEEe--CCCCCCCCcCCCcCCCCCCcccccccchhhheeeEEEEEecCCCcEE
Confidence 999999999999999999999985 999887 488889999999999999999999999999999999999 559985
Q ss_pred Ec--cCCcccCCCCCccchhhhcc-CCCeEEEEEEEEEe
Q 009112 254 DM--LGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT 289 (543)
Q Consensus 254 ~~--~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~v~lrl 289 (543)
.+ +.+ ..+.++||+|+++|+ +|+|||||+++||+
T Consensus 196 ~v~~~~~--~~~~d~DLf~a~rG~g~g~fGIVt~~~l~l 232 (530)
T 2y3s_A 196 TVIATRE--PSDPNHDLWWAHTGGGGGNFGVVVRYWLRT 232 (530)
T ss_dssp EEEEESC--TTCTTHHHHHHTTTSCTTSSCEEEEEEECC
T ss_pred EEecccc--ccCCChHHHHHHhcCCCCCcEEEEEEEEEe
Confidence 44 321 122223599999987 69999999999999
No 18
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=100.00 E-value=2.2e-34 Score=311.64 Aligned_cols=195 Identities=13% Similarity=0.167 Sum_probs=170.3
Q ss_pred hCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCC
Q 009112 90 LGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS 169 (543)
Q Consensus 90 ~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ 169 (543)
+....+..++..+....+.|+.++.+.|.+|++|+|++||+++|++|+++++||++|||||++.|.+.+.++|++|||++
T Consensus 8 ~~~~~~~p~~~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~gvvIdl~~ 87 (501)
T 3pop_A 8 VPPFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVLDLHN 87 (501)
T ss_dssp -CCEEEETTSTTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTSSCCSEEEECTT
T ss_pred CCCceECCCCcchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCccCCCccccCCCEEEEEecc
Confidence 43334455555666667788888899999999999999999999999999999999999999998887656799999999
Q ss_pred CCCeEEeeCCCcEEEEeCCccHHHHHHHHH-hcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEe-
Q 009112 170 MNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL- 247 (543)
Q Consensus 170 ln~i~~id~~~~~v~v~aGv~~~~L~~~l~-~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~- 247 (543)
||+| ++|+++.+++||||+++.+|+++|. ++|+.+| .|.+++++|||.++++++|..+.+||.++|+|+++|||+
T Consensus 88 l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~--~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~evV~~ 164 (501)
T 3pop_A 88 LHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALP--LGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVV 164 (501)
T ss_dssp CCCE-EECTTSSSEEEETTCBHHHHHHHHHHHHSBCCC--CCSBTTCBHHHHHHHCCCCTTHHHHCCGGGGEEEEEEEEE
T ss_pred cCCe-EEcCCCCEEEEECCcCHHHHHHHHHhhcCeEeC--CCCCCCceEeeccccCCCcccccccccHHHhEEEEEEEEe
Confidence 9998 8999999999999999999999996 5799987 577788899999999999999999999999999999999
Q ss_pred -cCCc--EEEccCCcccCCCCCccchhhhcc-CCCeEEEEEEEEEe
Q 009112 248 -ANGD--VIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT 289 (543)
Q Consensus 248 -~dG~--i~~~~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~v~lrl 289 (543)
+||+ ++.++++ ....++||+|+++|+ +|+|||||+++||+
T Consensus 165 da~G~~~~v~~~~~--~~~~~~DLf~a~rG~G~g~fGIVt~~~lk~ 208 (501)
T 3pop_A 165 DESRTVRLVTARAD--DTGDLGELFWAHTGGGGGNFGVVTAYEFRS 208 (501)
T ss_dssp CTTSCEEEEEEETT--CCHHHHHHHHHTTTSCTTSSCEEEEEEECC
T ss_pred cCCCCEEEEEeccC--CCCCCccHHHHhhccCCCCcEEEEEEEEEe
Confidence 8999 5555321 123567999999998 79999999999998
No 19
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=100.00 E-value=1.4e-35 Score=321.21 Aligned_cols=206 Identities=18% Similarity=0.255 Sum_probs=178.2
Q ss_pred hhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcc-cCCCcEEEEeCCCCCeEEeeCCCcEEE
Q 009112 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGSMNNIITFDKGSGVLV 184 (543)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~-~~~~gvvIdl~~ln~i~~id~~~~~v~ 184 (543)
+.+|+......|.+|++|+|++||+++|++|+++++||+++||||++.|.+. +..+|++|||++||+| ++|+++.+++
T Consensus 43 n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~ 121 (518)
T 3vte_A 43 NLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSI-KIDVHSQTAW 121 (518)
T ss_dssp BGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCTTCTTTCCSSSEEEEECTTCCCE-EEETTTTEEE
T ss_pred ccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCCCCeEEEECCCCcee-EEeCCCCEEE
Confidence 3467777788999999999999999999999999999999999999988775 3357999999999999 8999999999
Q ss_pred EeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEEccCCcccCCC
Q 009112 185 CEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNT 264 (543)
Q Consensus 185 v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~~~~~~~k~~~ 264 (543)
||||+++.+|+++|.++|+.+.+.+|++++++|||+++++++|..+.+||.++|+|++++||++||++++.. ..
T Consensus 122 V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~------~~ 195 (518)
T 3vte_A 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRK------SM 195 (518)
T ss_dssp EETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHH------HH
T ss_pred EeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEee------cc
Confidence 999999999999999986554444788889999999999999999999999999999999999999999531 24
Q ss_pred CCccchhhhcc-CCCeEEEEEEEEEeccCCcceeEEEEEeC-CHHHHHHHHHHHHH
Q 009112 265 GYDLKHLFIGS-EGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAKR 318 (543)
Q Consensus 265 g~dL~~~~~Gs-~G~lGIIt~v~lrl~p~p~~~~~~~~~~~-~~~~~~~~~~~~~~ 318 (543)
++||+|+++|+ +|+|||||+++||++|.|+....+.+.+. +.+++.+++..++.
T Consensus 196 ~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (518)
T 3vte_A 196 GEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQN 251 (518)
T ss_dssp CHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred ccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHH
Confidence 67999999998 89999999999999999986554444443 44666777766654
No 20
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=100.00 E-value=7e-34 Score=306.28 Aligned_cols=218 Identities=18% Similarity=0.203 Sum_probs=187.4
Q ss_pred CceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcc-cCCCcEEEEeCCCC
Q 009112 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGSMN 171 (543)
Q Consensus 93 ~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~-~~~~gvvIdl~~ln 171 (543)
..+..++..+......|+.++.+.|.+|++|+|++||+++|++|+++++||+++|||||+.|.+. +..++++|||++||
T Consensus 13 ~v~~p~~~~y~~~~~~~n~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~vvIdl~~~~ 92 (473)
T 3rja_A 13 PIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMI 92 (473)
T ss_dssp CBCCTTSHHHHHHTCCSBTTSCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCTTCGGGTSSSSCEEEECTTCC
T ss_pred cEECCCCCchHHHHHHhhcccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCcccCCCCeEEEECCCCC
Confidence 34555556677777889888999999999999999999999999999999999999999986543 23568999999999
Q ss_pred CeEEeeCCCcEEEEeCCccHHHHHHHHHhcC-CccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCC
Q 009112 172 NIITFDKGSGVLVCEAGCILENLVSFLDDHG-FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANG 250 (543)
Q Consensus 172 ~i~~id~~~~~v~v~aGv~~~~L~~~l~~~G-l~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG 250 (543)
+|.++|+++.+++||||+++.+|.++|.++| +.+| .|+++.++|||.+++|++|..+.+||.++|+|++++||++||
T Consensus 93 ~i~~vd~~~~~v~v~aG~~~~~l~~~l~~~G~~~~p--~G~~~~vgvgG~~~ggg~G~~~~~~G~~~D~v~~~~vV~a~G 170 (473)
T 3rja_A 93 DVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAIS--HGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADG 170 (473)
T ss_dssp CEEEEETTTTEEEECTTCBHHHHHHHHHHHHSEECC--CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTS
T ss_pred ceEEEcCCCCEEEECCCCCHHHHHHHHHHcCCEEec--cCCCCCcEeeeeccCCCCCcccccccchHhheeeEEEEecCC
Confidence 9966999999999999999999999999999 7777 377888899999999999999999999999999999999999
Q ss_pred cEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCC--HHHHHHHHHHHH
Q 009112 251 DVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKD--YFSCQKLLREAK 317 (543)
Q Consensus 251 ~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~--~~~~~~~~~~~~ 317 (543)
++++++.+ .++||+|+++|++|+|||||+++||++|.|+......+.++- .+++.+++..++
T Consensus 171 ~v~~~~~~-----~~~dLf~a~rG~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
T 3rja_A 171 RIVEASAT-----ENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVE 234 (473)
T ss_dssp CEEEEETT-----BSHHHHHHHHHHGGGTCEEEEEEEECEECCSCEEEEEEECCCCSHHHHHHHHHHHH
T ss_pred eEEEeCCC-----CCcchhhcccCCCCceEEEEEEEEEEEeCCCceEEEEEEecCccHHHHHHHHHHHH
Confidence 99998764 578999999999999999999999999999765544444432 344555554443
No 21
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=99.98 E-value=1.2e-31 Score=294.69 Aligned_cols=199 Identities=21% Similarity=0.301 Sum_probs=168.7
Q ss_pred HHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCccc----CCCcEEEEe-CCCCCeEEee
Q 009112 103 LAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP----VFDEVIINM-GSMNNIITFD 177 (543)
Q Consensus 103 ~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~----~~~gvvIdl-~~ln~i~~id 177 (543)
..+.++|+..+.+.|.+|++|+|++||+++|++|+++++||+++|+|||+.+.+.. ..+|++||| ++||+| ++|
T Consensus 22 ~~~~~~w~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~~i-~vd 100 (561)
T 2i0k_A 22 QQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGI-TVN 100 (561)
T ss_dssp EEEEECTTSSSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCE-EEE
T ss_pred HHHHhhhhhccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCCce-Eec
Confidence 33567898889999999999999999999999999999999999999998543221 135899999 899999 999
Q ss_pred C--CCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCC----------ccccCCCCccEEEEEE
Q 009112 178 K--GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGLEA 245 (543)
Q Consensus 178 ~--~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~----------~~~yG~~~d~V~~~ev 245 (543)
+ ++.+|+||||+++.+|.++|.++|+.+|+.|++ +.+||||++++|+||.. +.+||.++|+|+++++
T Consensus 101 ~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~~~-~~~TvGG~i~~~~~G~~l~~gG~~~~s~~~~G~~~d~V~~~ev 179 (561)
T 2i0k_A 101 TGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAP-GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTA 179 (561)
T ss_dssp CCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCCSC-TTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEE
T ss_pred CcCCccEEEEcCCCCHHHHHHHHHHcCCcccccCCC-CCcccCCCcccCCcccccccCCcccccccccccHhheEEEEEE
Confidence 8 788999999999999999999999999988876 56899999999999986 7789999999999999
Q ss_pred EecCCc---EEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHH
Q 009112 246 VLANGD---VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (543)
Q Consensus 246 V~~dG~---i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~ 312 (543)
|++||+ +++++++ .+||+++++|. |. ||||+++||+.|.|+.....+..++ ++++++.
T Consensus 180 V~~dG~~~~~~~~~~~------~~dl~~a~~g~-G~-giIt~~tl~l~p~~~~~~~~~~~~~-~~~~l~~ 240 (561)
T 2i0k_A 180 VVWNGTTYALETYQRN------DPRITPLLTNL-GR-CFLTSVTMQAGPNFRQRCQSYTDIP-WRELFAP 240 (561)
T ss_dssp EEECSSSEEEEEEETT------SGGGHHHHSCT-TS-SCEEEEEEECEECCEEEEEEECCSC-HHHHTCC
T ss_pred EeCCCCEEEeeeccCC------CccHHHHHhcC-CC-EEEEEEEEEEEECCceEEEEEEccC-HHHHHHH
Confidence 999999 6666532 35898888844 55 8999999999999976655544344 5555544
No 22
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=99.98 E-value=1.1e-32 Score=283.29 Aligned_cols=193 Identities=18% Similarity=0.297 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcc
Q 009112 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (543)
Q Consensus 78 ~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~ 157 (543)
++.+++++|++++|+++|.+ ++.+..|++ ..+++.|++|++|+|++||++++++|+++++|++++|||||+.++..
T Consensus 14 ~~~~~~~~l~~~l~~~~v~~-~~~l~~~~t---~~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~~~GgGtnl~~~~~ 89 (326)
T 1hsk_A 14 INKDIYQALQQLIPNEKIKV-DEPLKRYTY---TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREG 89 (326)
T ss_dssp -CHHHHHHHHHHSCGGGEEE-EEEGGGTCT---TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECTT
T ss_pred chHHHHHHHHHhcCccceec-CcchHHhcc---CCcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCccccCCC
Confidence 67888999999999888888 667888873 35788999999999999999999999999999999999999987765
Q ss_pred cCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCC----ccccCCCCCCcceecccccCCcCCCCcccc
Q 009112 158 PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRY 233 (543)
Q Consensus 158 ~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl----~lp~~~g~~~~~tvGG~va~na~G~~~~~y 233 (543)
+. +|++|||++||+| ++|. .+++||||++|.+|+++|.++|+ .++.+|| ||||++++|+|| |
T Consensus 90 ~~-~gvvI~l~~m~~i-~id~--~~v~v~aGv~~~~l~~~l~~~Gl~gLe~~~~~Pg-----tvGG~i~~nagg-----y 155 (326)
T 1hsk_A 90 GI-RGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG-----SIGGAVYMNAGA-----Y 155 (326)
T ss_dssp CE-EEEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCS-----BHHHHHHHTCEE-----T
T ss_pred CC-CeEEEEeCCCCce-EEcC--CEEEEeCCCcHHHHHHHHHHCCCccccccCCCcc-----hhhHHHhccccc-----C
Confidence 54 6899999999999 8973 68999999999999999999999 6666554 699999999999 9
Q ss_pred C-CCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccC-Cc
Q 009112 234 G-SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK-LS 294 (543)
Q Consensus 234 G-~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~-p~ 294 (543)
| .++|+|+++++|++||++++++.+ +...||++..++ ++| ||||+++||+.|. |+
T Consensus 156 G~~~~d~v~~v~vv~~~G~i~~~~~~--~~~~gyr~~~l~--s~g--gIIt~~~l~l~p~~p~ 212 (326)
T 1hsk_A 156 GGEVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQ--KEH--LVVLEAAFTLAPGKMT 212 (326)
T ss_dssp TEEHHHHEEEEEEECTTSCEEEEETT--TTTCBTTBCHHH--HTT--CEEEEEEEECEECCHH
T ss_pred chhhhhhEEEEEEEeCCCCEEEEChH--HcCCCccccccC--CCC--EEEEEEEEEEEcCCHH
Confidence 9 899999999999999999998875 556778776554 566 9999999999998 53
No 23
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=99.96 E-value=9.8e-30 Score=274.51 Aligned_cols=194 Identities=17% Similarity=0.289 Sum_probs=165.6
Q ss_pred hhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCC-----CCcccCCCcEEEEeC-CCCCeEEeeCC
Q 009112 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-----GGSVPVFDEVIINMG-SMNNIITFDKG 179 (543)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~-----g~~~~~~~gvvIdl~-~ln~i~~id~~ 179 (543)
.++|+..+.+.|.+|++|+|++||+++|++|+++++||+++|+|||+. ++. +..+||+|||+ +||+| ++|++
T Consensus 19 ~~nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~~~~pv~v~GgGhs~~~l~~~gG~-~~~~GVvIdls~~Ln~I-~vD~~ 96 (540)
T 3js8_A 19 FKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGV-SCPAVVLLDTTRYLTAM-SIDAS 96 (540)
T ss_dssp EECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCSSCSSCCTTC-SSCSEEEEETTTTCCCE-EEECS
T ss_pred eeccccccCCCccEEEEcCCHHHHHHHHHHHHHcCCeEEEEeCCCCcccccccCCC-CCCCeEEEECcCcCCCE-EECCC
Confidence 457888899999999999999999999999999999999999999996 554 55679999995 69999 99985
Q ss_pred --CcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCC----------ccccCCCCccEEEEEEEe
Q 009112 180 --SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGLEAVL 247 (543)
Q Consensus 180 --~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~----------~~~yG~~~d~V~~~evV~ 247 (543)
..+|+||||+++.+|+++|.++|+.++..+++ +.+||||+|++|+||.+ +.+||.++|+|++++||+
T Consensus 97 ~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi-~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~~levV~ 175 (540)
T 3js8_A 97 GPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAP-GDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVV 175 (540)
T ss_dssp SSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSC-SCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEE
T ss_pred CCccEEEEccCCCHHHHHHHHHHcCCEEEecCCC-CCeEEcccccCCCCcccccccccccccccccccHHHhEEEEEEEc
Confidence 58999999999999999999999999988886 45899999999999986 479999999999999999
Q ss_pred cCCc-----EEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHH
Q 009112 248 ANGD-----VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQK 311 (543)
Q Consensus 248 ~dG~-----i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~ 311 (543)
+||+ ++++++ .++||++++.|+ |+ ||||+++||++|.+......+. .-+++++++
T Consensus 176 adG~~~~~~i~~~s~------~~~DL~a~r~G~-G~-gIVTevtlrl~P~~~l~~~~~~-~~~~~e~l~ 235 (540)
T 3js8_A 176 YDKASGAYALRKFAR------NDPQIAPLLAHV-GR-SLIVEATLQAAPNQRLRCQSWF-NIPYGEMFA 235 (540)
T ss_dssp EETTTTEEEEEEEET------TSGGGHHHHTCT-TS-SCEEEEEEEEEECCEEEEEEEC-CSCHHHHTC
T ss_pred CCCCCceeeEEEeCC------CChhHHHHHhcC-CC-eEEEEEEEEEEECCceEEEEEe-cCCHHHHHh
Confidence 9998 666653 367996666555 77 5999999999999876544322 236676664
No 24
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=99.96 E-value=3.5e-30 Score=263.25 Aligned_cols=197 Identities=16% Similarity=0.287 Sum_probs=161.7
Q ss_pred CCCHHHHHHHHHhhCCCceecCHHHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc
Q 009112 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (543)
Q Consensus 77 ~~~~~~~~~l~~~~g~~~v~~~~~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~ 156 (543)
+|+++++++|++++|++++.++ +++..|+ ++++++.|+++++|+|++||++++++|+++++|++++|+|||+.++.
T Consensus 19 ~~~~~~~~~L~~~lg~~~v~~~-~~l~~~t---t~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~v~GgGsnl~~~~ 94 (322)
T 3tx1_A 19 YFQSNAMNNLQTKFPHIAIKLN-EPLSKYT---YTKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKD 94 (322)
T ss_dssp ------CCCHHHHCTTSEEEEE-EEGGGGS---TTSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEEEESCCTTEEECT
T ss_pred ccCHHHHHHHHHhcCCcceEcC-cchHHhc---cCCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEEEECCccCCCcCC
Confidence 3667788899999999889888 6788898 35788999999999999999999999999999999999999997654
Q ss_pred ccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCcccc-C
Q 009112 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRY-G 234 (543)
Q Consensus 157 ~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~y-G 234 (543)
.+ .+|++|||++||+| .+| +.+++||||++|.+|.+++.++|+. +.+.++.+ +||||++++|+|| | |
T Consensus 95 ~~-~~gvvI~l~~~~~I-~~d--~~~v~v~aG~~~~~l~~~l~~~Gl~Gle~~~giP--gTVGGav~~NaGg-----yGg 163 (322)
T 3tx1_A 95 GG-IRGVILHLDLLQTI-ERN--NTQIVAMSGAKLIDTAKFALNESLSGLEFACGIP--GSIGGALHMNAGA-----YGG 163 (322)
T ss_dssp TC-EEEEEEECTTCCCE-EEE--TTEEEEETTSBHHHHHHHHHHTTEESCGGGTTCC--SBHHHHHHHTCEE-----TTE
T ss_pred CC-CCeEEEECCCCCcE-EEC--CCEEEEecCcCHHHHHHHHHHcCCcccccCCCCc--chhHHHHHhCccC-----ccc
Confidence 32 35899999999999 576 3589999999999999999999995 33334554 4699999999999 7 5
Q ss_pred CCCccEEEEEEEecCCcEEEccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCc
Q 009112 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (543)
Q Consensus 235 ~~~d~V~~~evV~~dG~i~~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~ 294 (543)
.++|+|+++++|++||+++++++ +..+|++...+.|+++ ||||+++||+.|.|.
T Consensus 164 ~~~d~v~~vevV~~~G~i~~~~~----~~~~~~yR~s~~g~~~--~IIt~~tl~L~p~~~ 217 (322)
T 3tx1_A 164 EISDVLEAATVLTQTGELKKLKR----SELKAAYRFSTIAEKN--YIVLDATFSLALEEK 217 (322)
T ss_dssp EHHHHEEEEEEECTTSCEEEEEG----GGCC--CC-CTTTGGG--CEEEEEEEECEECCH
T ss_pred chHhhEEEEEEEcCCCCEEEech----HHcCcchhhcccCCCC--EEEEEEEEEEEeCCH
Confidence 79999999999999999999864 3456677777666654 799999999999874
No 25
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=99.93 E-value=7.9e-26 Score=233.39 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=148.3
Q ss_pred HHHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeC-
Q 009112 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK- 178 (543)
Q Consensus 100 ~~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~- 178 (543)
+.|+.|+ ++++++.|+++++|+|++||++++++|+++++|++++|+|||+.+... .+|++|+++ |++| ++++
T Consensus 17 ~~L~~~t---t~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~vlGgGSNll~~d~--~~GvVI~l~-~~~i-~v~~~ 89 (357)
T 3i99_A 17 ANLKPYH---TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNMLFTCH--YTGMIVVNR-LNGI-EHQQD 89 (357)
T ss_dssp EESGGGS---TTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEEECSC--EEEEEEEEC-CCCE-EEEEC
T ss_pred Ccchhhc---cCCCCccceEEEEECCHHHHHHHHHHHHHcCCCEEEECCCcCcccCCC--CCeEEEEcC-CCce-EEecc
Confidence 4577788 678999999999999999999999999999999999999999976653 359999998 9998 6653
Q ss_pred -CCcEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEec-CCcEEE
Q 009112 179 -GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVID 254 (543)
Q Consensus 179 -~~~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~-dG~i~~ 254 (543)
++.+++|+||++|.+|.+++.++|+. +....++++ ||||++++|+|. ||. ++|+|+++++|++ ||++++
T Consensus 90 ~~~~~v~v~AG~~~~~l~~~a~~~Gl~GlE~l~gIPG--tVGGav~~NaGa-----YG~e~~d~v~~vevv~~~~G~i~~ 162 (357)
T 3i99_A 90 DDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPG--CAGSAPIQNIGA-----YGVEFKDVCDYVEYLCLETGTVKR 162 (357)
T ss_dssp SSEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCcHHHHHHHHHHcCCcCccccCCCCc--hhHHHHHhchhh-----hhhhHHhhEeEEEEEECCCCcEEE
Confidence 46689999999999999999999997 555566664 699999999986 997 9999999999998 999999
Q ss_pred ccCCcccCCCCCccchhhhc-----cCCCeEEEEEEEEEeccCCc
Q 009112 255 MLGTLRKDNTGYDLKHLFIG-----SEGSLGIVTKVSIHTPPKLS 294 (543)
Q Consensus 255 ~~~~~~k~~~g~dL~~~~~G-----s~G~lGIIt~v~lrl~p~p~ 294 (543)
++++ |+.+.+++ ++|++||||+++||+.|.+.
T Consensus 163 ~~~~--------dl~f~YR~s~~~~~~g~~gIIt~v~f~L~p~~~ 199 (357)
T 3i99_A 163 LTME--------ECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQ 199 (357)
T ss_dssp EETG--------GGCCBTTBCGGGTTTTTTEEEEEEEEEEESSCC
T ss_pred EeHH--------HcCcccccccCCCccCCCEEEEEEEEEEEeCCc
Confidence 8754 34444443 34689999999999999864
No 26
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=99.93 E-value=5.8e-25 Score=226.22 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=147.2
Q ss_pred HHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCC-
Q 009112 102 LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS- 180 (543)
Q Consensus 102 l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~- 180 (543)
|+.|+ ++++++.|+++++|+|++||++++++|+++++|++++|+|||+.+... .+|++|+++ |++|..++.++
T Consensus 3 L~~~t---t~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~vlGgGSnll~~d~--~~GvVI~l~-~~~i~~i~~~~~ 76 (340)
T 1uxy_A 3 LKPWN---TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLED--YRGTVIINR-IKGIEIHDEPDA 76 (340)
T ss_dssp CGGGS---TTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECSC--EEEEEEEEC-CCCEEEEECSSE
T ss_pred ccccc---cCCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEEECCCcCCcccCC--CCeEEEEcc-CCCcEEEecCCC
Confidence 34566 568899999999999999999999999999999999999999977653 369999996 99997777776
Q ss_pred cEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccCC-CCccEEEEEEEec-CCcEEEccC
Q 009112 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVIDMLG 257 (543)
Q Consensus 181 ~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG~-~~d~V~~~evV~~-dG~i~~~~~ 257 (543)
.+++|+||++|.+|.+++.++|+. +....+.++ ||||++.+|+|+ ||. ++|+|.++++|++ +|++++++.
T Consensus 77 ~~v~vgAG~~~~~l~~~~~~~Gl~Gle~~~gIPG--tVGGa~~~NaGa-----yG~ei~d~v~~v~vv~~~~G~v~~~~~ 149 (340)
T 1uxy_A 77 WYLHVGAGENWHRLVKYTLQEGMPGLENLALIPG--CVGSSPIQNIGA-----YGVELQRVCAYVDSVELATGKQVRLTA 149 (340)
T ss_dssp EEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCHHHHHHHHHHCCCCccccccCCcc--chhHHHHhcccc-----chhhHHhheeEEEEEECCCCcEEEEeH
Confidence 689999999999999999999996 655566664 699999999988 996 9999999999997 999999875
Q ss_pred CcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCc
Q 009112 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (543)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~ 294 (543)
. ....+|... .+.++++++||||+++||+.|.|.
T Consensus 150 ~--d~~~gYR~s-~~~~~~~~~gIVt~v~~~L~~~~~ 183 (340)
T 1uxy_A 150 K--ECRFGYRDS-IFKHEYQDRFAIVAVGLRLPKEWQ 183 (340)
T ss_dssp G--GGTCBTTBC-GGGTTTTTTEEEEEEEEEEESSCC
T ss_pred H--HhccccCcC-ccCCcCCCCEEEEEEEEEEEcCCC
Confidence 4 122333321 223344579999999999999863
No 27
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=99.90 E-value=2.4e-24 Score=214.34 Aligned_cols=161 Identities=22% Similarity=0.205 Sum_probs=134.3
Q ss_pred HHHHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcccCCCcEEEEeCCCCCeEEeeCCC
Q 009112 101 VLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS 180 (543)
Q Consensus 101 ~l~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~~~~~gvvIdl~~ln~i~~id~~~ 180 (543)
+++.|+ ++++++.|+ +++|+|++||++++ ++|++++|+|||+.+...+.++|++|++++|++| ++| +
T Consensus 10 ~l~~~t---t~~igg~a~-vv~p~s~edv~~~v------~ipv~v~GgGsnll~~d~~~~~GvVI~l~~~~~I-~vd--~ 76 (268)
T 2gqt_A 10 LLKDYT---TLGVGGPAE-LWTVETREELKRAT------EAPYRVLGNGSNLLVLDEGVPERVIRLAGEFQTY-DLK--G 76 (268)
T ss_dssp EGGGGS---SSCCCCEEE-EEEECSHHHHHHHT------TSCEEECSSSSSEEECTTCCSSEEEEECGGGGCB-CTT--S
T ss_pred ChHHhc---ccccCcceE-EEEeCCHHHHHHHh------CCCeEEcCCCcCceecCCCcCCeEEEEcCCCCCc-EEc--C
Confidence 466677 457888899 99999999999999 8999999999999887766556999999999998 565 2
Q ss_pred cEEEEeCCccHHHHHHHHHhcCCc-cccCCCCCCcceecccccCCcCCCCccccC-CCCccEEEEEEEecCCcEEEccCC
Q 009112 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDMLGT 258 (543)
Q Consensus 181 ~~v~v~aGv~~~~L~~~l~~~Gl~-lp~~~g~~~~~tvGG~va~na~G~~~~~yG-~~~d~V~~~evV~~dG~i~~~~~~ 258 (543)
+|+||++|.+|.+++.++|+. +.+..+.++ ||||++++|+|+ || .++|+|+++++| +||++++++.+
T Consensus 77 ---~v~aG~~~~~l~~~~~~~Gl~Gle~~~giPG--tvGGav~~NaGa-----yG~e~~d~v~~v~vv-~~G~v~~~~~~ 145 (268)
T 2gqt_A 77 ---WVGAGTLLPLLVQEAARAGLSGLEGLLGIPA--QVGGAVKMNAGT-----RFGEMADALEAVEVF-HDGAFHVYCPE 145 (268)
T ss_dssp ---EEETTSBHHHHHHHHHHTTEESCGGGTTCCC--BHHHHHHTTCEE-----TTEEGGGGEEEEEEE-ETTEEEEECGG
T ss_pred ---EEECCCCHHHHHHHHHHcCCcCCccccCccc--hhHHHHHhcccc-----CchhHHhheeEEEEE-CCCcEEEEchH
Confidence 899999999999999999996 444455554 699999999987 99 599999999999 99999998754
Q ss_pred cccCCCCCccchhhhccCCC-eEEEEEEEEEeccCC
Q 009112 259 LRKDNTGYDLKHLFIGSEGS-LGIVTKVSIHTPPKL 293 (543)
Q Consensus 259 ~~k~~~g~dL~~~~~Gs~G~-lGIIt~v~lrl~p~p 293 (543)
|+++.+++|.-. -||||+++||+.|.+
T Consensus 146 --------~l~~~YR~s~~~~~gIVt~~~~~L~~~~ 173 (268)
T 2gqt_A 146 --------ELGFGYRKSHLPPGGIVTRVRLKLKERP 173 (268)
T ss_dssp --------GSCCBTTBCCCSTTCEEEEEEECCEECC
T ss_pred --------HcccccCCCCcCCCceEEEEEEEEEeCC
Confidence 455555555310 139999999999974
No 28
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=99.89 E-value=2e-23 Score=201.93 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=115.8
Q ss_pred EeeCCCcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCCCCccccCCCCccEEEEEEEecCCcEEE
Q 009112 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVID 254 (543)
Q Consensus 175 ~id~~~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~~~evV~~dG~i~~ 254 (543)
++|+++.+|+||||+++.+|+++|.++|+++|.+|++... ||||+|++|+|| .+||.. |+|++++||++||++++
T Consensus 2 ~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~~~~~Pg~~~~-tVGG~v~~nagG---~~yG~~-D~V~~vevV~~dG~i~~ 76 (219)
T 2yvs_A 2 EVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPG-GVGGLVARGGFA---QTFFFP-AEVLGLTFRTPKGRRVR 76 (219)
T ss_dssp EEETTTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTT-HHHHHHHTTCSS---BSSCGG-GGEEEEEEECTTSCEEE
T ss_pred eEcCCCCEEEEcCCCcHHHHHHHHHHcCCEEeccCCCCCC-chhheeccCccc---ccCCCc-cEEEEEEEEeCCCCEEE
Confidence 7899999999999999999999999999999988886666 999999999999 889999 99999999999999999
Q ss_pred ccCCcccCCCCCccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCH
Q 009112 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (543)
Q Consensus 255 ~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~ 306 (543)
++.+..|+..||||+++++|++|+|||||+++||+.|.|+.....++.+.++
T Consensus 77 ~~~~~~kn~~gydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~~~~~~~~~~~ 128 (219)
T 2yvs_A 77 AGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSF 128 (219)
T ss_dssp EECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSC
T ss_pred ECCccccCCCCcchHHHhccCCCceEEEEEEEEEEEECCcccEEEEEecCCH
Confidence 9987778889999999999999999999999999999998766655555443
No 29
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=98.57 E-value=1.6e-07 Score=94.35 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=97.3
Q ss_pred ccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCC--cccCCCcEEEEeCC---CCCeEEeeCCCcEEEEeCCccH
Q 009112 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (543)
Q Consensus 117 p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~--~~~~~~gvvIdl~~---ln~i~~id~~~~~v~v~aGv~~ 191 (543)
+--+++|+|.+|+.++++.. +.+..+.||||++.-. .-....+++||+++ |+.| +.+ +..++++||+++
T Consensus 5 ~~~~~~P~s~~ea~~ll~~~---~~~~~ilaGGT~ll~~~~~~~~~~~~lIdl~~i~eL~~i-~~~--~~~l~iGA~~tl 78 (287)
T 1ffv_C 5 RFEYHAPKSVGEAVALLGQL---GSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGI-REE--GSTVVIGAMTVE 78 (287)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCE-EEE--TTEEEEETTCBH
T ss_pred cceEECCCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Eec--CCEEEEccCCcH
Confidence 34589999999999999864 2578889999997321 00013489999985 6676 443 446999999999
Q ss_pred HHHHHH-HHhcCCc-c----c--cCCCCCCcceecccccCCcCCCCccccCCCCccEE-------EEEEEecCCcEEEcc
Q 009112 192 ENLVSF-LDDHGFI-M----P--LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDML 256 (543)
Q Consensus 192 ~~L~~~-l~~~Gl~-l----p--~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~-------~~evV~~dG~i~~~~ 256 (543)
.+|.+. +.+.++. | . -.+...+.+||||+|++|++ ..|.+. .+++..++| ..+..
T Consensus 79 ~~l~~~~~~~~~~~~L~~a~~~~a~~qiRN~gTvGGni~~~~~---------~~D~~~~l~Al~A~v~~~~~~G-~r~i~ 148 (287)
T 1ffv_C 79 NDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDP---------GNDHPALSIAVEAHFVLEGPNG-RRTVP 148 (287)
T ss_dssp HHHHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCT---------TCSHHHHHHHTTCEEEEEETTE-EEEEE
T ss_pred HHHhhChHHHHHhHHHHHHHHHhCCHHHhcceechhhhccCCC---------cHHHHHHHHHcCcEEEEEcCCc-eEEEE
Confidence 999963 3333332 1 1 11222335789999999975 345444 588888999 34433
Q ss_pred CCcccCCCCCccchhhhccC-CCeEEEEEEEEEeccC
Q 009112 257 GTLRKDNTGYDLKHLFIGSE-GSLGIVTKVSIHTPPK 292 (543)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~-G~lGIIt~v~lrl~p~ 292 (543)
.+ |++..++-+. ..-.||++++|.+.+.
T Consensus 149 ~~--------df~~g~~~t~l~~~eii~~i~ip~~~~ 177 (287)
T 1ffv_C 149 AD--------GFFLGTYMTLLEENEVMVEIRVPAFAQ 177 (287)
T ss_dssp ST--------TTEEETTEESCCTTCEEEEEEEECCCT
T ss_pred HH--------HHhcCcccccCCCCCEEEEEEecCCCC
Confidence 22 3332222110 1124899999987653
No 30
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.73 E-value=8.5e-06 Score=86.78 Aligned_cols=154 Identities=13% Similarity=0.083 Sum_probs=95.1
Q ss_pred CCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCC--cccCCCcEEEEeCC---CCCeEEeeCCCcEEEEeCCc
Q 009112 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGC 189 (543)
Q Consensus 115 ~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~--~~~~~~gvvIdl~~---ln~i~~id~~~~~v~v~aGv 189 (543)
|....+++|+|.+|+.++++... +..+.||||++.-. .-....+++||+++ |+.| +.+ +..++++||+
T Consensus 175 G~a~~y~~P~sl~ea~~ll~~~~----~a~ilaGGT~L~~~~k~~~~~~~~lIdl~~i~eL~~I-~~~--~~~l~IGA~v 247 (462)
T 2w3s_A 175 GQTAPAFLPETSDALADWYLAHP----EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQI-RET--PDGYGIGAGV 247 (462)
T ss_dssp ----CCBCCSSHHHHHHHHHHCT----TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCE-EEE--TTEEEEETTC
T ss_pred CCccEEEecCCHHHHHHHHhhCC----CCEEEeCCchhhhhhhccCCCCCEEEEcCCChhhCcE-EEc--CCEEEEccCC
Confidence 44456789999999999998632 35778999998421 00113478999998 6776 454 4469999999
Q ss_pred cHHHHHHHHHhcCCc-c----cc--CCCCCCcceecccccCCcCCCCccccCCCCccEE----EEEEEecCCcEEEccCC
Q 009112 190 ILENLVSFLDDHGFI-M----PL--DLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGDVIDMLGT 258 (543)
Q Consensus 190 ~~~~L~~~l~~~Gl~-l----p~--~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~----~~evV~~dG~i~~~~~~ 258 (543)
++.+|.+.+.+ .+. | .. .+...+.+||||+|++++.+ +.+...++ .+++..++|+ .+...+
T Consensus 248 tl~~l~~~l~~-~~p~L~~a~~~ia~~qIRN~gTvGGNl~~~sp~------sD~~~~L~ALdA~v~l~~~~G~-R~vp~~ 319 (462)
T 2w3s_A 248 TIAALRAFAEG-PHPALAGLLRRFASEQVRQVATIGGNIANGSPI------GDGPPALIAMGASLTLRRGQER-RRMPLE 319 (462)
T ss_dssp BHHHHHHHHTT-TCHHHHHHHTTSSCHHHHTTCBHHHHHHHTCTT------CSHHHHHHHTTCEEEEEBTTBC-CCCBGG
T ss_pred cHHHHHHHHHH-HhHHHHHHHHHhCChhheeeEEcccccccCCCc------chHHHHHHHcCCEEEEEeCCce-EEEEHH
Confidence 99999988543 332 1 11 12223447999999998743 44555566 7778888883 222111
Q ss_pred cccCCCCCccchhhhcc-CCCeEEEEEEEEEecc
Q 009112 259 LRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHTPP 291 (543)
Q Consensus 259 ~~k~~~g~dL~~~~~Gs-~G~lGIIt~v~lrl~p 291 (543)
|++...+-+ ...--||++++|...+
T Consensus 320 --------dF~~g~~~t~L~~~Eii~~i~iP~~~ 345 (462)
T 2w3s_A 320 --------DFFLEYRKQDRRPGEFVESVTLPKSA 345 (462)
T ss_dssp --------GGEEETTEESCCTTCEEEEEEEESCC
T ss_pred --------HhhcccccccCCCCcEEEEEEEecCC
Confidence 332222111 0011489999987654
No 31
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=97.64 E-value=6.7e-05 Score=75.12 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=91.6
Q ss_pred ccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCC--cccCCCcEEEEeCC---CCCeEEeeCCCcEEEEeCCccH
Q 009112 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (543)
Q Consensus 117 p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~--~~~~~~gvvIdl~~---ln~i~~id~~~~~v~v~aGv~~ 191 (543)
+--+++|+|.+|+.++++.. +-+..+.||||++.-. .-....+++||+++ |+.| +. ++..++++|++++
T Consensus 5 ~~~~~~P~sl~ea~~ll~~~---~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I-~~--~~~~l~IGA~~t~ 78 (288)
T 1n62_C 5 SFDYHRPKSIADAVALLTKL---GEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGI-RE--EGTDVVIGAMTTQ 78 (288)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCE-EE--ETTEEEEETTCBH
T ss_pred ceEEECcCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Ee--cCCEEEEccCCcH
Confidence 34588999999999999743 2356788999996321 00013479999987 4565 44 4457999999999
Q ss_pred HHHHH--HHHhcCCc-cc------cCCCCCCcceecccccCCcCCCCccccCCCCccEE-------EEEEEecCCcEEEc
Q 009112 192 ENLVS--FLDDHGFI-MP------LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDM 255 (543)
Q Consensus 192 ~~L~~--~l~~~Gl~-lp------~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~-------~~evV~~dG~i~~~ 255 (543)
.+|.+ .+.++ +. |. -++...+.+||||+|+++. ...|.+. .+++..++|+ .+.
T Consensus 79 ~~l~~~~~~~~~-~p~L~~a~~~ia~~qiRN~gTiGGnl~~a~---------p~sD~~~~L~Al~A~v~l~~~~G~-r~v 147 (288)
T 1n62_C 79 HALIGSDFLAAK-LPIIRETSLLIADPQIRYMGTIGGNAANGD---------PGNDMPALMQCLGAAYELTGPEGA-RIV 147 (288)
T ss_dssp HHHHHCHHHHHH-CHHHHHHHTTSSCHHHHHHCBHHHHHHSCC---------TTCSHHHHHHHHTCEEEEEETTEE-EEE
T ss_pred HHHhcChHHHHH-HHHHHHHHHHhCCHHHHccccccchhccCC---------CchHHHHHHHHhCcEEEEEeCCcc-EEE
Confidence 99984 55442 21 11 0122223479999999873 2455544 6677788884 332
Q ss_pred cCCcccCCCCCccchhhhcc-CCCeEEEEEEEEEecc
Q 009112 256 LGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHTPP 291 (543)
Q Consensus 256 ~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~v~lrl~p 291 (543)
..+ |++....-. ...--|||++.|...+
T Consensus 148 ~~~--------df~~g~~~t~l~~~eil~~i~ip~~~ 176 (288)
T 1n62_C 148 AAR--------DYYQGAYFTAIEPGELLTAIRIPVPP 176 (288)
T ss_dssp EHH--------HHEEETTEESCCTTCEEEEEEEECCC
T ss_pred EHH--------HHhcCcccccCCCCCEEEEEEeCCCC
Confidence 211 222211100 0112479999987654
No 32
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=97.48 E-value=0.00019 Score=72.37 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=82.6
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc--ccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCc
Q 009112 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (543)
Q Consensus 112 ~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv 189 (543)
.+++.+..+++|+|.+|+.++++.. .+ ..+.+|||++.-.. -.....++||++++..+-.|..++..++++|++
T Consensus 5 ~~~g~~~~y~~P~sl~ea~~ll~~~--~~--a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~v 80 (305)
T 3nvz_B 5 RFEGERVTWIQASTLKELLDLKAQH--PE--AKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAAC 80 (305)
T ss_dssp EEECSSCEEEECCSHHHHHHHHHHC--TT--CEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTC
T ss_pred EecCCCeEEEccCCHHHHHHHHHhC--CC--CEEEECccHHHHHHhcCCCCCCEEEECCCChhhcceEECCCeEEEccCC
Confidence 3467778899999999999988643 12 36679999974210 011347899999754332233345679999999
Q ss_pred cHHHHHHHHHhc-------------CCc--cc--cCCCCCCcceecccccCCcCCCCccccCCCCccEE----EEEEEec
Q 009112 190 ILENLVSFLDDH-------------GFI--MP--LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLA 248 (543)
Q Consensus 190 ~~~~L~~~l~~~-------------Gl~--lp--~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~----~~evV~~ 248 (543)
++.++.+.+.++ .+. +. -.+...+.+||||+|+++... +.+.-.++ .+++..+
T Consensus 81 t~~~l~~~~~~~~~~~p~~~~~~~p~L~~a~~~ia~~qiRN~aTiGGNl~~a~p~------sD~~~~L~AldA~v~l~~~ 154 (305)
T 3nvz_B 81 ALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPI------SDLNPVFMASGTKLTIVSR 154 (305)
T ss_dssp BHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCCTT------CSSHHHHHHHTCEEEEEET
T ss_pred cHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHhCCHHHhCeeechheeCCCCCc------hHHHHHHHHcCCEEEEEcC
Confidence 999999877532 010 11 112223467999999987642 22222222 4677778
Q ss_pred CCc
Q 009112 249 NGD 251 (543)
Q Consensus 249 dG~ 251 (543)
+|+
T Consensus 155 ~G~ 157 (305)
T 3nvz_B 155 GTR 157 (305)
T ss_dssp TEE
T ss_pred CCc
Confidence 885
No 33
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=96.92 E-value=0.00063 Score=67.98 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=77.3
Q ss_pred ccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc--ccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHH
Q 009112 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (543)
Q Consensus 117 p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L 194 (543)
+--+++|+|.+|+.++++- ..+ ..+.+|||++.-.. -......+||++++..+..|..+++.++++|++++.+|
T Consensus 5 ~f~y~~P~sl~ea~~ll~~--~~~--a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l 80 (288)
T 1t3q_C 5 AFSYRAPASLQEVIQVLAD--DPD--ARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRN 80 (288)
T ss_dssp CCEEECCSSHHHHHHHHHH--CTT--CEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEEETTCBHHHH
T ss_pred CceEECCCCHHHHHHHHhh--CCC--CEEEeCchhHHHHHhcCCCCCCEEEECCCChhhcCeEEcCCEEEEcCCCcHHHH
Confidence 3458899999999999874 222 45679999863110 00134789999985432223334567999999999999
Q ss_pred HH--HHHhcCCccc------cCCCCCCcceecccccCCcCCCCccccCCCCccEE-------EEEEEecCCc
Q 009112 195 VS--FLDDHGFIMP------LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGD 251 (543)
Q Consensus 195 ~~--~l~~~Gl~lp------~~~g~~~~~tvGG~va~na~G~~~~~yG~~~d~V~-------~~evV~~dG~ 251 (543)
.+ .+.++--.|. -++...+.+|+||+|++.. ...|... .+++..++|+
T Consensus 81 ~~~~~~~~~~p~L~~a~~~ias~qiRN~aTiGGNi~~a~---------p~sD~~~~L~Al~A~v~l~~~~g~ 143 (288)
T 1t3q_C 81 KTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHAD---------AGAEMPFLMATLGATMYIASSAGV 143 (288)
T ss_dssp HHCHHHHHHCTHHHHHHTTSSCHHHHTTCBHHHHHHHTC---------TTCHHHHHHHHTTCEEEEEETTEE
T ss_pred hcCHHHHHHHHHHHHHHHHhCCHHHHcceechhhcccCC---------CcHHHHHHHHHcCcEEEEEcCCce
Confidence 86 4443211111 1233345579999997542 2456555 6777778885
No 34
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=96.11 E-value=0.0014 Score=65.66 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=65.7
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCc--ccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHHHHH
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~~L~ 195 (543)
--+++|+|.+|..++++-..+. ...+.+|||++.-.. -......+||++++..+-.|..++..++++|++++.++.
T Consensus 4 f~y~~P~sl~ea~~ll~~~~~~--~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l~ 81 (296)
T 3hrd_C 4 FEFFAPKTLEEAKGLLHQYKDV--PPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFTQIE 81 (296)
T ss_dssp CEEECCSSHHHHHHHHHHTTTS--CCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHHHHH
T ss_pred eeEeCCCCHHHHHHHHHhCCCC--CeEEEECCcHHHHHhhcCCCCCCeEEEcccChhhcceEEcCCeEEEccCCcHHHHH
Confidence 3578999999999988643220 246679999973210 011347899999864333333456689999999999997
Q ss_pred HH--HHhc-------CCccccCCCCCCcceecccccCCc
Q 009112 196 SF--LDDH-------GFIMPLDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 196 ~~--l~~~-------Gl~lp~~~g~~~~~tvGG~va~na 225 (543)
+. +.++ =..+. ++...+.+||||+|++..
T Consensus 82 ~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~a~ 119 (296)
T 3hrd_C 82 NHPFIRSHVRALYKAASQVG-SPQIRNLGTIGGNLSTSS 119 (296)
T ss_dssp HCHHHHHHCHHHHHHHHTSS-CHHHHHHCBHHHHHHHTC
T ss_pred hChhhhhHhHHHHHHHHHhC-CHHHhcceehhhhhccCC
Confidence 42 2221 00011 222334579999998643
No 35
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=94.11 E-value=0.014 Score=59.15 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=63.4
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCC--cccCCCcEEEEeCCC---CCeEEeeCCCcEEEEeCCccHH
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGSM---NNIITFDKGSGVLVCEAGCILE 192 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~--~~~~~~gvvIdl~~l---n~i~~id~~~~~v~v~aGv~~~ 192 (543)
--+++|+|.+|..++++ +. .-.+.+|||++... .-......+||++++ +.| +.++ ++.++++|++++.
T Consensus 7 f~y~~P~sl~ea~~ll~---~~--~a~~lAGGT~l~~~~k~~~~~p~~lIdi~~i~eL~~I-~~~~-~~~l~IGA~vt~~ 79 (324)
T 1rm6_B 7 FRTHRPATLADAVNALA---AE--ATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATI-STLA-DGSLRIGAGATLE 79 (324)
T ss_dssp CEEECCSSHHHHHHHTT---ST--TEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCE-EECT-TSCEEEETTCBHH
T ss_pred eEEEccCCHHHHHHHHh---CC--CCEEEECchhHHHHHhccCCCCCEEEECCCChhhcce-EECC-CCeEEEccCCcHH
Confidence 34789999999999886 22 24667999987311 000134789999886 555 4432 3358999999999
Q ss_pred HHHHH--HHhc-------CCccccCCCCCCcceecccccC
Q 009112 193 NLVSF--LDDH-------GFIMPLDLGAKGSCQIGGNVST 223 (543)
Q Consensus 193 ~L~~~--l~~~-------Gl~lp~~~g~~~~~tvGG~va~ 223 (543)
+|.+. +.++ =..+ -+|...+.+||||+|++
T Consensus 80 ~l~~~~~~~~~~p~L~~a~~~i-as~qIRN~aTiGGNl~~ 118 (324)
T 1rm6_B 80 AIAEHDAIRTTWPALAQAAESV-AGPTHRAAATLGGNLCQ 118 (324)
T ss_dssp HHHHCHHHHHHSHHHHHHHHHS-SCHHHHHHCBHHHHHTC
T ss_pred HHHhChHHHHHHHHHHHHHHHh-CCHHHcceeEeeeeccc
Confidence 99864 2221 0001 12334456899999975
No 36
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=80.99 E-value=0.54 Score=56.26 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=66.1
Q ss_pred CCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCC--CcccCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCccHH
Q 009112 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVG--GSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILE 192 (543)
Q Consensus 115 ~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g--~~~~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~~~ 192 (543)
+.-...++|.|.+|+.++..-- -+.++ ..|||.+.- ..-...-.++||+.+...+..+...+..++++|+|++.
T Consensus 238 g~~~~w~~P~tl~el~~l~~~~--p~a~l--vaGnT~~gl~~~~~~~~~~~~I~~~~v~EL~~i~~~~~~l~IGA~vtls 313 (1335)
T 3zyv_A 238 GERTTWIAPGTLNDLLELKMKH--PSAPL--VIGNTYLGLHMKFTDVSYPIIISPARILELFVVTNTKQGLTLGTGLSLT 313 (1335)
T ss_dssp CSSCEEEECSSHHHHHHHHHHC--TTSCB--CSSCTTHHHHHC--CCCCSEEECCTTCGGGSCEECCTTEEEEETTCBHH
T ss_pred CCCceEecCCCHHHHHHHHHHC--CCCeE--EEecccceeeEeecCCCCCeEEEcCcchhHheEEecCCEEEEcccCcHH
Confidence 3345678999999999986532 22333 457776510 00111236899988755444455566679999999999
Q ss_pred HHHHHHHhcCCcccc-----------------CCCCCCcceecccccCC
Q 009112 193 NLVSFLDDHGFIMPL-----------------DLGAKGSCQIGGNVSTN 224 (543)
Q Consensus 193 ~L~~~l~~~Gl~lp~-----------------~~g~~~~~tvGG~va~n 224 (543)
++.+.|.+.--.+|. .+...+.+||||+|++.
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~fAs~qIRN~aTigGNI~~a 362 (1335)
T 3zyv_A 314 QVKNVLSDVVSRLPKEKTQIYCALLKQLKTLAGQQIRNVASLGGHIISR 362 (1335)
T ss_dssp HHHHHHHHHHTTSCTTTCTTHHHHHHHHTTSSCHHHHHHCBHHHHHHTC
T ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcchhhcCcccccCceecc
Confidence 999988652111110 11223458999999864
No 37
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=79.87 E-value=0.65 Score=49.28 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=26.2
Q ss_pred hhhhccCCHHHHHHHHHHhHhcCCCCCCCCCcccC
Q 009112 503 NKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLP 537 (543)
Q Consensus 503 ~~l~~~~g~~~~~~m~~iK~~~DP~gIlNPGk~~~ 537 (543)
+|....|| ++++.|++||++|||+|+|+-..-||
T Consensus 437 ~~~~~yyg-~n~~RL~~vK~kyDP~n~F~~~qsI~ 470 (473)
T 3rja_A 437 YATKVYYG-ENLARLQKLKAKFDPTDRFYYPQAVR 470 (473)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHHCTTCTTCCTTSCC
T ss_pred hHHHHHHH-HHHHHHHHHhhccCchhhCCCCcCCC
Confidence 45555555 58999999999999999998554444
No 38
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=77.64 E-value=3.2 Score=49.52 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=69.3
Q ss_pred cCCCccEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCCCCCcc--cCCCcEEEEeCCCCCeEEeeCCCcEEEEeCCcc
Q 009112 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCI 190 (543)
Q Consensus 113 ~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~i~~id~~~~~v~v~aGv~ 190 (543)
+.+.+..+++|.|.+|+.++++-. .+ -.+.+|||++.-..- .....++||++++..+-.|..++..++++|+++
T Consensus 229 ~~~~~~~~~~P~sl~ea~~ll~~~--~~--a~lvaGgT~l~~~~k~~~~~~~~lIdl~~i~EL~~I~~~~~~l~IGA~vt 304 (1332)
T 3unc_A 229 FEGERVTWIQASTLKELLDLKAQH--PE--AKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACA 304 (1332)
T ss_dssp EECSSCEEEECCSHHHHHHHHHHC--TT--CEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCB
T ss_pred ecCCceEEEccCCHHHHHHHHhhC--CC--CEEEEeCcHHHHHhhcCCCCCCeEEEcCCCHHhCceEEeCCEEEEEecCh
Confidence 344566799999999999988642 12 255789988631100 113468999998553323333456799999999
Q ss_pred HHHHHHHHHhc-------CC-ccc---------cCCCCCCcceecccccCCc
Q 009112 191 LENLVSFLDDH-------GF-IMP---------LDLGAKGSCQIGGNVSTNA 225 (543)
Q Consensus 191 ~~~L~~~l~~~-------Gl-~lp---------~~~g~~~~~tvGG~va~na 225 (543)
+.+|.+.+.+. .. .+| -.+...+.+||||+|++..
T Consensus 305 l~~l~~~l~~~~~~~~~~~~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 356 (1332)
T 3unc_A 305 LSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITAS 356 (1332)
T ss_dssp HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSSCHHHHHHCBHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHhCCHHHhceeeccceecccC
Confidence 99999876532 00 011 0122234579999998754
No 39
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=49.70 E-value=46 Score=35.57 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHHHHHHh-cCC---eEEeeccCC--ch------hhhhhhcc----C-----CHHHHHHHHHHhHhcCCCCCCC
Q 009112 476 IEPYVYEWTSE-HRG---SISAEHGLG--LM------KANKIFYS----K-----SPKTVQLMSSIKKLLDPNGILN 531 (543)
Q Consensus 476 ~~~~~~~~~~~-~gG---sis~eHGiG--~~------k~~~l~~~----~-----g~~~~~~m~~iK~~~DP~gIlN 531 (543)
....+..++.+ ++| ++--|-|=+ .. -.+.+... | +.+.++.++++++.+||+++|.
T Consensus 455 ~~~~~E~~~~~~~~g~~~~~RPhW~K~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~DP~~~F~ 531 (540)
T 3js8_A 455 FYREIEQWIEANFNGSYAAVRPEWSKGWGYTDQAAWADSAMLQTTIPNAFRAGQPAAANWDAAKAALAAYDPYRLFS 531 (540)
T ss_dssp HHHHHHHHHHHHSCTTTEEEEECTTSBCSCCSSCTTCCHHHHHTHHHHHTTTTCCGGGSHHHHHHHHHHHCTTCCSC
T ss_pred HHHHHHHHHHHhcCCCccccCcccccccccccccccCCHHHHHhhchhhhccCCCCCCCHHHHHHHHHhcCCCcccC
Confidence 44556677777 888 333343433 11 12344443 5 2246999999999999999984
No 40
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=38.03 E-value=58 Score=27.35 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=35.9
Q ss_pred HHhhhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceE-EEEcCC
Q 009112 103 LAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (543)
Q Consensus 103 ~~~~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv-~~~GgG 149 (543)
..+...| ...|.+..|+...+++++.++.+-|.+.++|. +++=.|
T Consensus 43 ~~~~~~W--~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 88 (120)
T 1xty_A 43 KEWLNEW--LHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAG 88 (120)
T ss_dssp HHHHHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4455555 46788999999999999999999999999996 445444
No 41
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.56 E-value=66 Score=24.97 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=29.0
Q ss_pred cEEEecCCHHHHHHHHHHhhcCCceEEEEcCCCCC
Q 009112 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (543)
Q Consensus 118 ~~vv~P~s~~dV~~il~~a~~~~~pv~~~GgGt~~ 152 (543)
.++-...|.+|+..+++-.+.++-|+++.-.|.+.
T Consensus 29 ryirtatssqdirdiiksmkdngkplvvfvngasq 63 (112)
T 2lnd_A 29 RYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQ 63 (112)
T ss_dssp TTEEEECSHHHHHHHHHHHTTCCSCEEEEECSCCH
T ss_pred ceeeeccchhhHHHHHHHHHhcCCeEEEEecCccc
Confidence 45667889999999999999999999887665543
No 42
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=32.80 E-value=56 Score=27.66 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=34.1
Q ss_pred hhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceE-EEEcCCC
Q 009112 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (543)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv-~~~GgGt 150 (543)
...| ...|.+..|++..|++|+.++.+.|++.++|. +++-.|.
T Consensus 40 l~~W--~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~DAG~ 83 (123)
T 1rzw_A 40 RRKW--LDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGL 83 (123)
T ss_dssp HHHT--GGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3445 34678999999999999999999999999985 4455543
No 43
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=29.89 E-value=61 Score=27.26 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=33.6
Q ss_pred hhhhhcccCCCccEEEecCCHHHHHHHHHHhhcCCceE-EEEcCC
Q 009112 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (543)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv-~~~GgG 149 (543)
...| ...|.|..|++..+++++.++.+.|.+.++|. +++=.|
T Consensus 47 ~~~W--~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 89 (121)
T 1wn2_A 47 FEAW--FREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAG 89 (121)
T ss_dssp HHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3445 36788999999999999999999999999986 344444
No 44
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=26.36 E-value=28 Score=22.05 Aligned_cols=19 Identities=5% Similarity=0.286 Sum_probs=16.1
Q ss_pred ccCCHHHHHHHHHHhHhcC
Q 009112 507 YSKSPKTVQLMSSIKKLLD 525 (543)
Q Consensus 507 ~~~g~~~~~~m~~iK~~~D 525 (543)
...|.++|++|++||..++
T Consensus 6 ~VrGRe~yEml~ki~d~LE 24 (31)
T 1aie_A 6 QIRGRERFEMFRELNEALE 24 (31)
T ss_dssp CCCSHHHHHHHHHHHHHHH
T ss_pred EeccHHHHHHHHHHHHHHH
Confidence 3568999999999998874
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=24.82 E-value=1.2e+02 Score=23.62 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=33.5
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+|..+|. .+|-|.++.+...+........++.|.+.+++.+++..+
T Consensus 30 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 30 EDVLRLFQ----PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHH
Confidence 36666653 456688888876654444667889999999998887654
No 46
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=24.24 E-value=42 Score=33.94 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhhcCCceEEEE
Q 009112 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (543)
Q Consensus 124 ~s~~dV~~il~~a~~~~~pv~~~ 146 (543)
=|.+|+.+|+++|++++|.|+|-
T Consensus 92 YT~~di~eiv~YA~~rgI~VIPE 114 (367)
T 1yht_A 92 LSYRQLDDIKAYAKAKGIELIPE 114 (367)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 48999999999999999999884
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.80 E-value=1.3e+02 Score=23.21 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=33.4
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+|..+|. .+|-|.++.+...+.-......++.|.+.+++.+++..+
T Consensus 32 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 32 EELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 36666653 456788888876653345567889999999998877654
No 48
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=23.69 E-value=1.2e+02 Score=23.68 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=34.2
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+|..+|. .+|-|.++.+...+........++.|.+.+++.+++..+
T Consensus 44 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 44 ADIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp HHHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 35666664 467788888877664445667889999999998887655
No 49
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=23.53 E-value=1.1e+02 Score=23.29 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=33.7
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+|..+|. .+|-|.++.+...+........++.|.+.+++.+++..+
T Consensus 31 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 31 EILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 36666663 456788888766655445667889999999998877654
No 50
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=21.61 E-value=1.1e+02 Score=25.53 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.3
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhcCCceE-EEEcCCC
Q 009112 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (543)
Q Consensus 112 ~~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv-~~~GgGt 150 (543)
...|.|..|++..+++++.++.+-|.+.++|. +++-.|+
T Consensus 47 ~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~ 86 (117)
T 1rlk_A 47 YDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGY 86 (117)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36788999999999999999999999999986 4454443
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=20.91 E-value=1.6e+02 Score=23.72 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=34.9
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCC-cceeEEEEEeCCHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+|..+| ..+|-|.++.+-..+.. ......++.|.+.++|.+++..+
T Consensus 21 ~~L~~~F----~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 21 TFLKDMC----RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3676666 35678999988766653 45667889999999998887665
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=1.6e+02 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=33.8
Q ss_pred CccchhhhccCCCeEEEEEEEEEeccCCcceeEEEEEeCCHHHHHHHHHHH
Q 009112 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (543)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~v~lrl~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
.+|..+|. .+|-|.++.+...+........++.|.+.+++.+++..+
T Consensus 30 ~~l~~~f~----~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 30 KKLKEVFS----MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 36666653 456788888766654444667889999999998887655
No 53
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=20.60 E-value=96 Score=24.33 Aligned_cols=41 Identities=7% Similarity=0.171 Sum_probs=30.3
Q ss_pred CcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCC
Q 009112 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (543)
Q Consensus 180 ~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G 227 (543)
++...|.+.+.+.+|++.+ |+.+|- ...-|+||++....|.
T Consensus 15 dg~~~v~G~~~l~dl~~~l---~~~l~~----~~~~TlgG~i~~~lg~ 55 (93)
T 2r2z_A 15 DNEYLVQGRMLIDEFNEVF---ETDLHM----SDVDTMAGYLITALGT 55 (93)
T ss_dssp TTEEEEETTSBHHHHHHHH---TCCCCC----TTCCBHHHHHHHHHSS
T ss_pred CCEEEEECCCCHHHHHHHh---CCCCCC----CCcccHHHHHHHHhCC
Confidence 4567899999999999886 455652 2356899999765543
No 54
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=20.49 E-value=1.1e+02 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=31.1
Q ss_pred cCCCccEEEecCCHHHHHHHHHHhhcCCceE-EEEcCC
Q 009112 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (543)
Q Consensus 113 ~~~~p~~vv~P~s~~dV~~il~~a~~~~~pv-~~~GgG 149 (543)
..|.|..|++..+++|+.++.+.|.+.++|. +++-.|
T Consensus 46 ~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~DAG 83 (115)
T 2zv3_A 46 REGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAG 83 (115)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5788999999999999999999999999885 344443
No 55
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=20.34 E-value=1.1e+02 Score=23.39 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=30.0
Q ss_pred CcEEEEeCCccHHHHHHHHHhcCCccccCCCCCCcceecccccCCcCC
Q 009112 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (543)
Q Consensus 180 ~~~v~v~aGv~~~~L~~~l~~~Gl~lp~~~g~~~~~tvGG~va~na~G 227 (543)
++...|.+.+.+.+|++.+ |+.+|. ...-|+||++....|.
T Consensus 8 dg~~~v~G~~~l~dl~~~l---~~~l~~----~~~~Tl~G~i~~~lg~ 48 (83)
T 3llb_A 8 SGDFIVKALTPVDAFNDFF---GSEFSD----EEFDTVGGLVMSAFGH 48 (83)
T ss_dssp TSCEEEETTCBHHHHHHHH---CCCCCT----TTCSBHHHHHHHHHSS
T ss_pred CCEEEEEccCCHHHHHHHh---CCCCCC----CCCcCHHHHHHHHhCc
Confidence 4457899999999999886 455652 2456899999776544
No 56
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=20.21 E-value=59 Score=33.80 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhhcCCceEEEE--cCCCC
Q 009112 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (543)
Q Consensus 124 ~s~~dV~~il~~a~~~~~pv~~~--GgGt~ 151 (543)
=|.+|+.+|+++|++++|.|+|- -=||.
T Consensus 92 YT~~di~eIv~YA~~rgI~VIPEID~PGH~ 121 (442)
T 2yl5_A 92 LTQAEVTELIEYAKSKDIGLIPAINSPGHM 121 (442)
T ss_dssp BCHHHHHHHHHHHHTTTCEEEEEEEESSSC
T ss_pred cCHHHHHHHHHHHHHcCCeeeeecccchhH
Confidence 38999999999999999999985 33554
Done!