BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009113
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum
pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum In Complex With D-Glucuronic
Acid
pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum Covalent-Bonded With
2-Deoxy-2-Fluoro-D-Glucuronic Acid
Length = 488
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 114/283 (40%), Gaps = 34/283 (12%)
Query: 168 GAWDSNNARDFLKYTISM--GYQIDSWEYGNE--LSGRTSI-GASVDAELYGKDLINLKN 222
G NA D Y + ++ +++ GNE L R I AS D Y D
Sbjct: 142 GKGTPENAADEAAYVMETIGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFT 201
Query: 223 IINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNL-VS 281
I + N+ P ++ +W F +V ++ H Y GP DP++ +
Sbjct: 202 AIRKRVPNAP----FAGPDTAYNTKWLVPFADKFKHDV-KFISSHYYAEGPPTDPSMTIE 256
Query: 282 KILNPQ-RLSRVSETFGNLKQTIEKHG-PWASAWVGESGGAYNSGGRHVSNTFVNSFWYL 339
+++ P RL + ET G LKQ G P+ + E+ Y G + VS+TF + W
Sbjct: 257 RLMKPNPRL--LGETAG-LKQVEADTGLPFR---LTETNSCYQGGKQGVSDTFAAALWAG 310
Query: 340 DQLGMSSKYNTKVYCRQTLVGGNYGLLNATT------FIPNPDYYSALLWHRLMGKGVLS 393
D + + + GG YG FI P+YY LL+ + G G L
Sbjct: 311 DLMYQQAAAGS---TGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQ-AGAGQLL 366
Query: 394 VA--TDGSSS--LRSYA-HCSKEREGITLLLINLSNQTDYVIS 431
A TD S++ L +YA + R I L NL + IS
Sbjct: 367 GAKLTDNSAAPLLTAYALRGTDGRTRIALFNKNLDADVEVAIS 409
>pdb|2NZ5|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZ5|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
Length = 413
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 251 KFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWA 310
K L+ +++G+ I GP D LV ++L P ++ VSE G E+ W
Sbjct: 121 KRLRPRAQEILDGLVDGILAEGPPAD--LVERVLEPFPIAVVSEVMGVPAADRERVHSWT 178
Query: 311 SAWVGESGGA 320
+ SGGA
Sbjct: 179 RQIISTSGGA 188
>pdb|2DKK|A Chain A, Structure/function Studies Of Cytochrome P450 158a1 From
Streptomyces Coelicolor A3(2)
Length = 411
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 251 KFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWA 310
K L+ +++G+ I GP D LV ++L P ++ VSE G E+ W
Sbjct: 121 KRLRPRAQEILDGLVDGILAEGPPAD--LVERVLEPFPIAVVSEVMGVPAADRERVHSWT 178
Query: 311 SAWVGESGGA 320
+ SGGA
Sbjct: 179 RQIISTSGGA 188
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPGVD + +S +++T+ + I H + + G G ++ GR
Sbjct: 158 IGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 217
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 218 GVFHGIENFINEASYMSILGMTPGFGDKTFAVQGF--GNVGL------------HSMRYL 263
Query: 384 HRLMGKGVLSVATDGS 399
HR K V +DGS
Sbjct: 264 HRFGAKCVAVGESDGS 279
>pdb|3QYC|A Chain A, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
pdb|3QYC|B Chain B, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
Length = 146
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 19 LARDVTRVTIFVDATKTVATNDEHFICATV-DWWPHDKCNYNHCPWGNSSVINL 71
++RD ++ T+++ A + + C T+ D P D C Y WG +++ +
Sbjct: 72 ISRDNSKNTVYLQMNSLRAEDTAVYYCVTLPDLCPGDNCTYPDASWGQGTMVTV 125
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPGVD + +S +++T+ + I H + + G G ++ GR
Sbjct: 158 IGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 217
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 218 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 263
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 264 HRFGAKCITVGESDGS 279
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPG+D + +S +++T+ + I H + + G G ++ GR
Sbjct: 153 IGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 212
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 213 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 258
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 259 HRFGAKCIAVGESDGS 274
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPG+D + +S +++T+ + I H + + G G ++ GR
Sbjct: 162 IGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 221
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 222 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 267
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 268 HRFGAKCIAVGESDGS 283
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPG+D + +S +++T+ + I H + + G G ++ GR
Sbjct: 153 IGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 212
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 213 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 258
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 259 HRFGAKCIAVGESDGS 274
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 409 SKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAV 461
+K GI LL +NL N T Y + + N+ V+ KD N E +++ V
Sbjct: 120 AKPENGIALLTVNLDNPTGYGRIIRENGNVVAIVEQKDANAEQLNIKEVNTGV 172
>pdb|1NNI|1 Chain 1, Azobenzene Reductase From Bacillus Subtilis
Length = 174
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
>pdb|3GFS|A Chain A, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|B Chain B, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|C Chain C, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|D Chain D, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|E Chain E, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|F Chain F, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|G Chain G, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|H Chain H, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|I Chain I, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|J Chain J, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|K Chain K, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|L Chain L, Structure Of Yhda, K109dD137K VARIANT
Length = 174
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
>pdb|3GFR|A Chain A, Structure Of Yhda, D137l Variant
pdb|3GFR|B Chain B, Structure Of Yhda, D137l Variant
pdb|3GFR|C Chain C, Structure Of Yhda, D137l Variant
pdb|3GFR|D Chain D, Structure Of Yhda, D137l Variant
Length = 174
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
>pdb|3GFQ|A Chain A, Structure Of Yhda, K109l Variant
pdb|3GFQ|B Chain B, Structure Of Yhda, K109l Variant
pdb|3GFQ|C Chain C, Structure Of Yhda, K109l Variant
pdb|3GFQ|D Chain D, Structure Of Yhda, K109l Variant
Length = 174
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 200 GRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTIL 238
GRT I AS A LY DLI+L + ++ + + +L
Sbjct: 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELL 52
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 266 HHIYNLGPGVDPNLVSKILNPQRLSRVSET 295
H Y L PGVDP V+ L+P+ + + T
Sbjct: 57 HRRYRLPPGVDPAAVTSALSPEGVLSIQAT 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,086,803
Number of Sequences: 62578
Number of extensions: 742595
Number of successful extensions: 2016
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2007
Number of HSP's gapped (non-prelim): 20
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)